Psyllid ID: psy8569

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MRKESNVIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGLFSPIRAG
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEEEEcccccccccccccEEEEEEEccEEEEEEcEEEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEccccEEEEEEEEEEcEcccccccccccEEEEEEcccEEEHHEEEEEEEEcccEEEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
mrkesnvigsnfrwsvfsvktrfevpsetndvnqgLLIEVWDKgiiwdraigyhylplpqvafsnevgsrktagvkglfspirag
Flexible Loop (DISEMBL)
mrkesnvigsnfrwsvfsvktrfevpsetndvnqglLIEVWDKGIIWDRAIGYHYLPLPQVAFSnevgsrktagvkglfspirag
Low Complexity Region (SEG)
MRKESNVIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGLFSPIRAG
Disordered region (IsUnstruct)
******VIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEV******************
Disordered Region (DISOPRED)
******V**SNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLP******************LFSPI***
Disordered Region (DISEMBL)
********GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGLFSPIRAG
Disordered Region (DISPRO)
*****NVIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNE*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRKESNVIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGLFSPIRAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
P27715	2155	Phorbol ester/diacylglyce	no	N/A	0.494	0.019	0.476	3e-08
Q9UPW8	1703	Protein unc-13 homolog A	yes	N/A	0.482	0.024	0.463	5e-05
Q62768	1735	Protein unc-13 homolog A	yes	N/A	0.482	0.023	0.463	5e-05
Q4KUS2	1712	Protein unc-13 homolog A	yes	N/A	0.482	0.023	0.463	5e-05

>sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 32/42 (76%)

Query: 28  ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGS 69
           ETN  + G+++E+W KG++WD+ IG HY+PL ++ +SN  GS
Sbjct: 69  ETNRPDDGMVLELWAKGVLWDKLIGVHYMPLSEIRYSNAAGS 110

May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons.
Caenorhabditis elegans (taxid: 6239)

>sp|Q9UPW8|UN13A_HUMAN Protein unc-13 homolog A OS=Homo sapiens GN=UNC13A PE=2 SV=4

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
          E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct: 52 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 92

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses (By similarity). Also involved in secretory granule priming in insulin secretion (By similarity). Interacts with FBXO45 (via SRY domain); leading to the degradation of UNC13A by the proteasome.

Homo sapiens (taxid: 9606)

>sp|Q62768|UN13A_RAT Protein unc-13 homolog A OS=Rattus norvegicus GN=Unc13a PE=1 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
          E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct: 52 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 92

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Also involved in secretory granule priming in insulin secretion.

Rattus norvegicus (taxid: 10116)

>sp|Q4KUS2|UN13A_MOUSE Protein unc-13 homolog A OS=Mus musculus GN=Unc13a PE=1 SV=3

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
          E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct: 52 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 92

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Also involved in secretory granule priming in insulin secretion.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
270015463	389	hypothetical protein TcasGA2_TC004068 [T	0.494	0.107	0.690	9e-11
242016344	178	unc-13, putative [Pediculus humanus corp	0.494	0.235	0.666	8e-10
340714749	2550	PREDICTED: protein unc-13 homolog B-like	0.529	0.017	0.577	8e-10
350414989	191	PREDICTED: phorbol ester/diacylglycerol-	0.494	0.219	0.619	3e-09
383855782	1503	PREDICTED: uncharacterized protein LOC10	0.529	0.029	0.555	4e-09
307214946	211	Phorbol ester/diacylglycerol-binding pro	0.470	0.189	0.625	6e-09
307173526	1373	Phorbol ester/diacylglycerol-binding pro	0.470	0.029	0.625	1e-08
332022807	223	Phorbol ester/diacylglycerol-binding pro	0.470	0.179	0.6	2e-08
328701429	843	PREDICTED: hypothetical protein LOC10057	0.482	0.048	0.634	2e-07
324500257	1800	Phorbol ester/diacylglycerol-binding pro	0.517	0.024	0.477	5e-07

>gi|270015463|gb|EFA11911.1| hypothetical protein TcasGA2_TC004068 [Tribolium castaneum]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query: 28  ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGS 69
           ETND+N GLLIEVW KG+IWDRA+GYH++PL  V +SNE G+
Sbjct: 86  ETNDLNTGLLIEVWSKGMIWDRAMGYHWIPLQTVQYSNEEGN 127

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016344|ref|XP_002428789.1| unc-13, putative [Pediculus humanus corporis] gi|212513474|gb|EEB16051.1| unc-13, putative [Pediculus humanus corporis]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 36/42 (85%)

Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGS 69
          ETNDVN GLL+EVW KG+IWDRA+GY+Y+PL  + +SNE G+
Sbjct: 45 ETNDVNTGLLVEVWSKGMIWDRALGYNYIPLRDIQYSNEEGT 86

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714749|ref|XP_003395887.1| PREDICTED: protein unc-13 homolog B-like [Bombus terrestris]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 38/45 (84%)

Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKT 72
          ETND+N GLL+EVW KG +WDR +GY+Y+PL +V++ NEV S+++
Sbjct: 53 ETNDMNTGLLVEVWCKGFLWDRFLGYYYVPLSEVSYMNEVTSKQS 97

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414989|ref|XP_003490496.1| PREDICTED: phorbol ester/diacylglycerol-binding protein unc-13-like [Bombus impatiens]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGS 69
          ETND+N GLL+EVW KG +WDR +GY+Y+PL +V++ NE GS
Sbjct: 53 ETNDMNTGLLVEVWCKGFLWDRFLGYYYVPLSEVSYMNEEGS 94

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855782|ref|XP_003703389.1| PREDICTED: uncharacterized protein LOC100882622 [Megachile rotundata]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 37/45 (82%)

Query: 28  ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKT 72
           ETND+N GLL+E W KG +WDR +GY+Y+PL +V++ NEV S+++
Sbjct: 235 ETNDMNTGLLVEAWCKGFLWDRFLGYYYVPLSEVSYMNEVTSKQS 279

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214946|gb|EFN89791.1| Phorbol ester/diacylglycerol-binding protein unc-13 [Harpegnathos saltator]

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 34/40 (85%)

Query: 28  ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEV 67
           ETND+N GLL+EVW KG +WDR +GY+Y+PL +V++ NEV
Sbjct: 123 ETNDMNAGLLVEVWCKGFLWDRFLGYYYIPLSEVSYMNEV 162

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173526|gb|EFN64436.1| Phorbol ester/diacylglycerol-binding protein unc-13 [Camponotus floridanus]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 34/40 (85%)

Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEV 67
          ETND+N GL+IEVW KG +WDR +GY+Y+PL +V++ NEV
Sbjct: 56 ETNDMNAGLVIEVWCKGFLWDRFLGYYYIPLSEVSYMNEV 95

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022807|gb|EGI63080.1| Phorbol ester/diacylglycerol-binding protein unc-13 [Acromyrmex echinatior]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 34/40 (85%)

Query: 28  ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEV 67
           ETND+N GL++EVW KG +WDR +GY+Y+PL +V++ NEV
Sbjct: 72  ETNDMNAGLVVEVWCKGFLWDRFLGYYYIPLSEVSYMNEV 111

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701429|ref|XP_003241596.1| PREDICTED: hypothetical protein LOC100571379 [Acyrthosiphon pisum]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
          ETNDVN GLL+EVW +G + D AIGYH + LP V +SNE G
Sbjct: 53 ETNDVNTGLLVEVWRRGFLLDYAIGYHMVSLPTVRYSNEDG 93

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324500257|gb|ADY40127.1| Phorbol ester/diacylglycerol-binding protein unc-13 [Ascaris suum]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 34/44 (77%)

Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRK 71
          ETN ++ G+++E+W+KG++WD+ IG HY+PL  V +S+  GS K
Sbjct: 52 ETNRLDNGMMLELWNKGVLWDKLIGVHYIPLTSVQYSSAPGSGK 95

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
WB|WBGene00006752	2155	unc-13 [Caenorhabditis elegans	0.494	0.019	0.476	2.2e-07
UNIPROTKB|F1P9E8	817	UNC13A "Uncharacterized protei	0.482	0.050	0.463	6.8e-05
ZFIN|ZDB-GENE-050208-748	1742	si:dkey-110c1.7 "si:dkey-110c1	0.482	0.023	0.463	9.9e-05
UNIPROTKB|F8VZH8	1676	UNC13A "Protein unc-13 homolog	0.482	0.024	0.463	0.00016
UNIPROTKB|F8W0P6	1697	UNC13A "Protein unc-13 homolog	0.482	0.024	0.463	0.00016
UNIPROTKB|H7BXE5	1703	UNC13A "Protein unc-13 homolog	0.482	0.024	0.463	0.00016
UNIPROTKB|Q9UPW8	1703	UNC13A "Protein unc-13 homolog	0.482	0.024	0.463	0.00016
MGI|MGI:3051532	1712	Unc13a "unc-13 homolog A (C. e	0.482	0.023	0.463	0.00016
UNIPROTKB|F8W059	1722	UNC13A "Protein unc-13 homolog	0.482	0.023	0.463	0.00016
UNIPROTKB|F1MK99	1732	UNC13A "Uncharacterized protei	0.482	0.023	0.463	0.00016

WB|WBGene00006752 unc-13 [Caenorhabditis elegans (taxid:6239)]

 Score = 135 (52.6 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 20/42 (47%), Positives = 32/42 (76%)

Query:    28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGS 69
             ETN  + G+++E+W KG++WD+ IG HY+PL ++ +SN  GS
Sbjct:    69 ETNRPDDGMVLELWAKGVLWDKLIGVHYMPLSEIRYSNAAGS 110

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0046662 "regulation of oviposition" evidence=IGI;IMP

GO:0043051 "regulation of pharyngeal pumping" evidence=IGI;IMP

GO:0045202 "synapse" evidence=IDA

GO:0048786 "presynaptic active zone" evidence=IDA

UNIPROTKB|F1P9E8 UNC13A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 107 (42.7 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query:    28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
             E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct:    52 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 92

GO:0046872 "metal ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0016082 "synaptic vesicle priming" evidence=IEA

ZFIN|ZDB-GENE-050208-748 si:dkey-110c1.7 "si:dkey-110c1.7" [Danio rerio (taxid:7955)]

 Score = 109 (43.4 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query:    28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
             E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct:    58 EINRLDLGLTVEVWNKGLIWDTMVGTLWIPLSSIRQSNEEG 98

GO:0016082 "synaptic vesicle priming" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F8VZH8 UNC13A "Protein unc-13 homolog A" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 0.00016, P = 0.00016
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query:    28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
             E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct:    52 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 92

GO:0016082 "synaptic vesicle priming" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F8W0P6 UNC13A "Protein unc-13 homolog A" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 0.00016, P = 0.00016
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query:    28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
             E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct:    52 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 92

GO:0016082 "synaptic vesicle priming" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|H7BXE5 UNC13A "Protein unc-13 homolog A" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 0.00016, P = 0.00016
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query:    28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
             E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct:    52 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 92

GO:0016082 "synaptic vesicle priming" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9UPW8 UNC13A "Protein unc-13 homolog A" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 0.00016, P = 0.00016
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query:    28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
             E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct:    52 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 92

GO:0016082 "synaptic vesicle priming" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001956 "positive regulation of neurotransmitter secretion" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IEA

GO:0050435 "beta-amyloid metabolic process" evidence=IEA

GO:0060384 "innervation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

MGI|MGI:3051532 Unc13a "unc-13 homolog A (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 107 (42.7 bits), Expect = 0.00016, P = 0.00016
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query:    28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
             E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct:    52 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 92

GO:0000149 "SNARE binding" evidence=ISO

GO:0001956 "positive regulation of neurotransmitter secretion" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005623 "cell" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=ISO

GO:0007528 "neuromuscular junction development" evidence=IGI

GO:0016020 "membrane" evidence=IEA

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=IGI

GO:0016082 "synaptic vesicle priming" evidence=ISO

GO:0016188 "synaptic vesicle maturation" evidence=IMP

GO:0017075 "syntaxin-1 binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0019992 "diacylglycerol binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IGI;IMP

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045202 "synapse" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IMP

GO:0050435 "beta-amyloid metabolic process" evidence=IMP

GO:0060076 "excitatory synapse" evidence=ISO

GO:0060291 "long-term synaptic potentiation" evidence=ISO

GO:0060384 "innervation" evidence=IGI

UNIPROTKB|F8W059 UNC13A "Protein unc-13 homolog A" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 0.00016, P = 0.00016
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query:    28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
             E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct:    52 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 92

GO:0016082 "synaptic vesicle priming" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1MK99 UNC13A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 107 (42.7 bits), Expect = 0.00016, P = 0.00016
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query:    28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
             E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct:    52 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 92

GO:0060384 "innervation" evidence=IEA

GO:0050435 "beta-amyloid metabolic process" evidence=IEA

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IEA

GO:0035249 "synaptic transmission, glutamatergic" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0019992 "diacylglycerol binding" evidence=IEA

GO:0016188 "synaptic vesicle maturation" evidence=IEA

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0001956 "positive regulation of neurotransmitter secretion" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016082 "synaptic vesicle priming" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	85
cd08394	127	cd08394, C2A_Munc13, C2 domain first repeat in Mun	7e-12

>gnl|CDD|176040 cd08394, C2A_Munc13, C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 56.3 bits (136), Expect = 7e-12
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGS 69
          E N ++ GL+IE+W+KG+IWD  +G  ++PL  +  SNE G 
Sbjct: 52 EINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGP 93

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.71
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.03
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.0
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	98.98
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	98.97
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	98.95
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	98.91
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	98.9
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	98.87
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	98.86
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	98.85
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	98.85
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	98.84
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	98.82
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	98.82
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	98.82
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	98.81
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	98.81
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	98.78
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	98.78
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	98.77
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	98.77
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	98.76
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	98.74
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	98.73
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	98.72
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	98.72
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	98.72
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	98.72
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	98.71
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	98.71
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	98.71
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	98.7
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	98.7
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	98.69
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	98.69
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	98.68
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	98.68
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	98.68
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	98.67
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	98.66
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	98.66
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	98.66
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	98.66
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	98.65
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	98.65
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	98.64
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	98.63
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	98.62
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	98.62
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	98.61
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	98.6
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	98.59
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	98.58
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	98.57
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	98.54
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	98.54
cd00030	102	C2 C2 domain. The C2 domain was first identified i	98.53
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	98.51
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	98.49
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	98.47
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	98.47
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	98.47
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	98.47
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	98.46
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	98.44
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	98.39
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	98.39
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	98.38
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	98.37
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	98.35
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	98.33
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	98.3
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	98.29
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	98.25
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	98.24
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	98.24
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	98.23
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	98.23
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	98.21
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	98.21
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	98.11
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	98.1
PLN03008	868	Phospholipase D delta	97.99
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	97.97
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	97.97
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	97.93
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	97.92
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	97.89
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	97.88
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	97.88
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	97.78
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	97.77
KOG1030|consensus	168		97.73
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	97.7
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	97.65
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	97.58
PLN02223	537	phosphoinositide phospholipase C	97.32
PLN02952	599	phosphoinositide phospholipase C	97.26
PLN02222	581	phosphoinositide phospholipase C 2	97.1
PLN02230	598	phosphoinositide phospholipase C 4	97.03
KOG0169|consensus	746		96.68
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	96.65
PLN02228	567	Phosphoinositide phospholipase C	96.5
KOG1028|consensus	421		95.95
KOG2059|consensus	800		95.82
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	95.14
KOG1328|consensus	1103		94.88
KOG0696|consensus	683		94.88
KOG1028|consensus	421		93.89
PLN02270	808	phospholipase D alpha	93.54
KOG1264|consensus	1267		93.41
KOG2059|consensus	800		91.2
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	91.16
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	88.48
KOG1011|consensus	1283		87.8
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	86.88
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	83.09
KOG1031|consensus	1169		81.95

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.6e-17  Score=116.27  Aligned_cols=67  Identities=34%  Similarity=0.648  Sum_probs=64.0

Q ss_pred             eeeeeecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNVIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ++-.++|+||+|||       +|.|...+.++.|.|||||||++.||+||.+.|||++|.+++..++++|+.|+
T Consensus        34 kT~v~~~~nP~WnE-------~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~  100 (127)
T cd08394          34 TTIAVRGSQPCWEQ-------DFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD  100 (127)
T ss_pred             EeeECCCCCCceee-------EEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence            67788999999999       99999999999999999999999999999999999999999999999999986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.03  E-value=5.1e-10  Score=73.31  Aligned_cols=68  Identities=15%  Similarity=0.163  Sum_probs=54.9

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccC------CCCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeE
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETND------VNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAG   74 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d------~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~   74 (85)
                      ||-+++ +.||.||+       +|.|...+      ...-|.|+|||++..- |++||.+.+||+++....+....+|+.
T Consensus        34 kT~v~~~t~nP~Wne-------~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~  106 (126)
T cd08682          34 STSVKEKTTSPVWKE-------ECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFK  106 (126)
T ss_pred             eeeeecCCCCCEeCc-------eEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEE
Confidence            444554 57999999       88888766      3457999999999775 899999999999997555666789999


Q ss_pred             eec
Q psy8569          75 VKG   77 (85)
Q Consensus        75 l~~   77 (85)
                      |++
T Consensus       107 L~~  109 (126)
T cd08682         107 LES  109 (126)
T ss_pred             CcC
Confidence            975

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.00  E-value=5.6e-10  Score=72.45  Aligned_cols=64  Identities=19%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             eeeecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           5 SNVIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         5 ~~v~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      +.-++.||.||+       +|.|+..+.++.|.|||||++.. =|++||.+.+||+++..  +.....|+.|.+
T Consensus        39 ~~~~t~nP~Wne-------~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~--~~~~~~~~~L~~  103 (121)
T cd04042          39 TIYKNLNPVWDE-------KFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLEL--NKPTEVKLKLED  103 (121)
T ss_pred             eccCCCCCccce-------eEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCC--CCCeEEEEECCC
Confidence            345677999999       99998877788999999999998 68999999999999986  555667888753

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=98.98  E-value=5.4e-10  Score=71.38  Aligned_cols=66  Identities=21%  Similarity=0.219  Sum_probs=53.9

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCC-CCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDV-NQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~-~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||..++ +.||.||+       +|.|...+. .+-|.|+|||++.  |++||.+.+||..+.........+|..|++
T Consensus        35 kT~v~~~t~nP~Wne-------~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          35 KSKVKERTNNPVWEE-------GFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             eCccccCCCCCcccc-------eEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence            444444 56899999       888888774 4579999999998  999999999999998755456789998875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=98.97  E-value=2e-09  Score=73.05  Aligned_cols=62  Identities=18%  Similarity=0.278  Sum_probs=51.3

Q ss_pred             cCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeee-eceeeEEEeecC-CeeeecCcCCCceeEeeccc
Q psy8569           9 GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIW-DRAIGYHYLPLP-QVAFSNEVGSRKTAGVKGLF   79 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviw-DdLLG~~~lPL~-~v~~s~e~g~g~W~~l~~~~   79 (85)
                      +.||.|||       +|.|...+...-|.|||||+|.+= ||+||.+.|||. .+..  +....+|..|++..
T Consensus        44 ~~nP~WNe-------~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~--g~~~~~W~~L~~~~  107 (121)
T cd04016          44 AKNPRWNK-------TIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFN--GETLDDWYSLSGKQ  107 (121)
T ss_pred             CCCCccCe-------EEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccC--CCCccccEeCcCcc
Confidence            57999999       888887665567999999999876 899999999997 4554  55579999998754

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=98.95  E-value=1.3e-09  Score=69.93  Aligned_cols=60  Identities=18%  Similarity=0.116  Sum_probs=50.5

Q ss_pred             cCceeeeeccccceeeEeeeccC-CCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           9 GSNFRWSVFSVKTRFEVPSETND-VNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet~d-~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      +.||.||+       +|.|.... .++-|.|||||++..-|++||.+.+||.++..  +....+|..|++
T Consensus        44 ~~nP~Wne-------~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~--~~~~~~w~~L~~  104 (118)
T cd08681          44 GQHPEWDE-------ELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALK--EGEFDDWYELTL  104 (118)
T ss_pred             CCCCccCc-------eEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhh--cCCCCCcEEecc
Confidence            46999999       88888865 34579999999998779999999999999866  445789998864

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=98.91  E-value=1.4e-09  Score=70.51  Aligned_cols=63  Identities=14%  Similarity=0.105  Sum_probs=52.1

Q ss_pred             eecCceeeeeccccceeeEeeeccCC-CCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           7 VIGSNFRWSVFSVKTRFEVPSETNDV-NQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         7 v~g~~P~W~~~~~~~~~~f~fet~d~-~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      -++.||.||+       .|.|...+. ++-|.|+|||++.+-|+.||.+.+||+.+..+ .....+|..|++
T Consensus        33 ~~t~nP~Wne-------~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~-~~~~~~w~~L~~   96 (111)
T cd04052          33 KKTNNPSWNA-------STEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA-TSVGQQWFPLSG   96 (111)
T ss_pred             ccCCCCccCC-------ceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh-hhccceeEECCC
Confidence            4667899999       888887664 45699999999999999999999999999653 333579999885

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=98.90  E-value=3.2e-09  Score=70.45  Aligned_cols=69  Identities=17%  Similarity=0.190  Sum_probs=54.1

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCC-CCceEEEEeeCCeeeeceeeEEEeecCCeeeecC---cCCCceeEeec
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDV-NQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNE---VGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~-~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e---~g~g~W~~l~~   77 (85)
                      ||-+++ +.||.||+       +|.|...+. +.-|.|+|||++..-|++||.+.+||+++.....   ....+|+.|+.
T Consensus        31 kT~v~~~t~nP~Wne-------~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~  103 (121)
T cd08378          31 STKAIERTSNPEWNQ-------VFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLED  103 (121)
T ss_pred             cccccCCCCCCccce-------EEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccC
Confidence            333444 56899999       999998774 4579999999998888999999999999976432   23468999876


Q ss_pred             c
Q psy8569          78 L   78 (85)
Q Consensus        78 ~   78 (85)
                      .
T Consensus       104 ~  104 (121)
T cd08378         104 K  104 (121)
T ss_pred             C
Confidence            4

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=98.87  E-value=3.7e-09  Score=69.31  Aligned_cols=63  Identities=11%  Similarity=0.017  Sum_probs=51.2

Q ss_pred             ecCceeeeeccccceeeEeeeccCC----CCceEEEEeeCCee--eeceeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDV----NQGLLIEVWDKGII--WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~----~~gL~vEVWnKgvi--wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      ++.||.||+       .|.|...+.    +.-|.|+|||++..  -|++||.+.+||..+.. .+....+|+.|++.
T Consensus        41 ~t~nP~Wne-------~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~-~~~~~~~w~~L~~~  109 (127)
T cd04022          41 KDLNPVWNE-------KLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVP-PSEAVVQRYPLEKR  109 (127)
T ss_pred             CCCCCccce-------EEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCC-CCCccceEeEeeeC
Confidence            467899999       888887643    24699999999877  58999999999999983 34556799999863

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=98.86  E-value=4.2e-09  Score=67.30  Aligned_cols=61  Identities=26%  Similarity=0.223  Sum_probs=51.9

Q ss_pred             ecCceeeeeccccceeeEeeeccCC-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDV-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ++.||.|++       +|.|+..+. +.-|.|+|||++.. =|++||.+.+||+++..  +.....|+.|+.
T Consensus        41 ~t~nP~Wne-------~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~--~~~~~~w~~L~~  103 (116)
T cd08376          41 KTLNPQWLE-------QFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPR--EQTHSLELELED  103 (116)
T ss_pred             CCCCCceeE-------EEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCC--CCceEEEEEccC
Confidence            578899999       888887665 66899999999986 58999999999999876  567788998873

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=98.85  E-value=4.7e-09  Score=71.84  Aligned_cols=62  Identities=21%  Similarity=0.143  Sum_probs=53.5

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-------eeceeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-------WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-------wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      ++.||.|||       +|.|...+...-|.|+|||++.+       =|++||.+.+||+++..  +..-..|+-|+..
T Consensus        44 ~~~nP~WnE-------~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~--~~~~~~~~~L~~~  112 (126)
T cd08379          44 DSSNPRWNE-------QYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLED--DRVYAHSYPLLSL  112 (126)
T ss_pred             CCCCCccee-------EEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccC--CCEEeeEEEeEeC
Confidence            468999999       99998877777899999999987       79999999999999987  5556789998843

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=98.85  E-value=6e-09  Score=74.31  Aligned_cols=65  Identities=18%  Similarity=0.255  Sum_probs=52.1

Q ss_pred             eeeeeec-CceeeeeccccceeeEeeeccCCC---------CceEEEEeeCCee--eeceeeEEEeecCCeeeecCcCCC
Q psy8569           3 KESNVIG-SNFRWSVFSVKTRFEVPSETNDVN---------QGLLIEVWDKGII--WDRAIGYHYLPLPQVAFSNEVGSR   70 (85)
Q Consensus         3 ~~~~v~g-~~P~W~~~~~~~~~~f~fet~d~~---------~gL~vEVWnKgvi--wDdLLG~~~lPL~~v~~s~e~g~g   70 (85)
                      ||..+++ .||.||+       +|.|.+++.+         ..|.|||||+|.+  -|++||.+.+||+.+....  .-.
T Consensus        44 KT~v~k~TlnPvfNE-------~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~--~~~  114 (155)
T cd08690          44 KTSTIKDTNSPEYNE-------SFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKC--EIH  114 (155)
T ss_pred             ecCcccCCCCCcccc-------eEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccC--cce
Confidence            5666665 6799999       9999998774         4699999999874  6999999999999997743  344


Q ss_pred             ceeEee
Q psy8569          71 KTAGVK   76 (85)
Q Consensus        71 ~W~~l~   76 (85)
                      +|+.|.
T Consensus       115 ~~~~L~  120 (155)
T cd08690         115 ESVDLM  120 (155)
T ss_pred             EEEEhh
Confidence            577654

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=98.84  E-value=5e-09  Score=66.58  Aligned_cols=63  Identities=17%  Similarity=0.120  Sum_probs=52.1

Q ss_pred             eecCceeeeeccccceeeEeeeccC-CCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569           7 VIGSNFRWSVFSVKTRFEVPSETND-VNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus         7 v~g~~P~W~~~~~~~~~~f~fet~d-~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      -++.+|.|++       .|.|...+ .++-|.|+|||++..-|++||.+.+||.++..  +....+|..|++.
T Consensus        47 ~~t~~P~W~e-------~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~--~~~~~~w~~L~~~  110 (121)
T cd08391          47 KENLNPKWNE-------VYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEK--KGFIDEWLPLEDV  110 (121)
T ss_pred             CCCCCCcccc-------eEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcc--cCccceEEECcCC
Confidence            3567899999       78877754 45689999999998888999999999999976  4456899999753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=98.82  E-value=6.8e-09  Score=68.94  Aligned_cols=64  Identities=17%  Similarity=0.261  Sum_probs=49.7

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeec---cCCC-CceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSET---NDVN-QGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet---~d~~-~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ||-++ ++.||.||+       +|.|+.   .++. .-|.|+|||++..- |++||-+.+||+++..  ......|+.|
T Consensus        52 kT~v~~~~~nP~wnE-------~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~--~~~~~~W~~L  121 (122)
T cd08381          52 KTKVVRKTRNPTFNE-------MLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDL--SQETEKWYPL  121 (122)
T ss_pred             eCCccCCCCCCCccc-------EEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEecccccc--CCCccceEEC
Confidence            45555 455899999       888875   3344 37999999999765 8999999999999996  3445778765

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=98.82  E-value=8.4e-09  Score=67.72  Aligned_cols=66  Identities=23%  Similarity=0.333  Sum_probs=52.9

Q ss_pred             eeeeeec-CceeeeeccccceeeEeeeccCCCCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNVIG-SNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~g-~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||-.+++ .||.||+       +|.|.....++-|.|+|||.+-.. |++||.+.+||..+..  +....+|..|.+
T Consensus        34 kT~v~~~t~nP~Wne-------~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~~  101 (126)
T cd08678          34 QSSTQKNTSNPFWDE-------HFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRK--NPSGRQIFPLQG  101 (126)
T ss_pred             EeEEEecCCCCccCc-------eEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhcc--CCceeEEEEecC
Confidence            4445555 6999999       888887665678999999999876 8999999999999886  444467888864

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=98.82  E-value=1.3e-08  Score=65.35  Aligned_cols=69  Identities=17%  Similarity=0.049  Sum_probs=52.9

Q ss_pred             ceeeeeecC-ceeeeeccccceeeEeeeccCC-----CCceEEEEeeCCeee-eceeeEEEeecCCeeeec-CcCCCcee
Q psy8569           2 RKESNVIGS-NFRWSVFSVKTRFEVPSETNDV-----NQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSN-EVGSRKTA   73 (85)
Q Consensus         2 ~~~~~v~g~-~P~W~~~~~~~~~~f~fet~d~-----~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~-e~g~g~W~   73 (85)
                      +||-.++++ ||.|++       +|.|.....     +.-|.|+|||++.+- |++||.+.+||+.+.... .....+|+
T Consensus        34 ~kT~~~~~t~nP~wne-------~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~  106 (111)
T cd04011          34 KYTSVKKGTNCPFYNE-------YFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWL  106 (111)
T ss_pred             eeeeEEeccCCCcccc-------EEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEE
Confidence            466677766 899999       888876432     346999999999775 799999999999997632 23467788


Q ss_pred             Eeec
Q psy8569          74 GVKG   77 (85)
Q Consensus        74 ~l~~   77 (85)
                      .|..
T Consensus       107 ~L~~  110 (111)
T cd04011         107 LLTD  110 (111)
T ss_pred             EeeC
Confidence            7753

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=98.81  E-value=9.7e-09  Score=67.40  Aligned_cols=62  Identities=16%  Similarity=0.099  Sum_probs=51.7

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      +..||.||+       .|.|...+...-|.|+|||++.+ -|++||.+.+++..+. +......+|+.|++
T Consensus        42 ~t~nP~Wne-------~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~-~~~~~~~~W~~L~~  104 (121)
T cd04054          42 KTLNPFWGE-------EYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVIS-AHPRGIDGWMNLTE  104 (121)
T ss_pred             CCCCCcccc-------eEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhc-cCCCCCCcEEECee
Confidence            467899999       88888776667899999999976 7899999999998875 33445679999976

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=98.81  E-value=1.1e-08  Score=66.75  Aligned_cols=64  Identities=22%  Similarity=0.219  Sum_probs=53.5

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCc----CCCceeEeecc
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEV----GSRKTAGVKGL   78 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~----g~g~W~~l~~~   78 (85)
                      ++.||.||+       +|.|..+..+.-|.|+|||++.. -|++||.+.+||+++..++..    ...+|+.|++.
T Consensus        48 ~t~nP~Wne-------~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~  116 (133)
T cd04033          48 KTLNPKWNE-------EFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR  116 (133)
T ss_pred             CCCCCcEee-------EEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec
Confidence            456799999       99999877677899999999976 589999999999999986532    35689999864

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=98.78  E-value=1.5e-08  Score=65.60  Aligned_cols=68  Identities=19%  Similarity=0.219  Sum_probs=53.3

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccCC-CCceEEEEeeCCee-eeceeeEEEeecCCeeeec-CcCCCceeEeec
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETNDV-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSN-EVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~-e~g~g~W~~l~~   77 (85)
                      ||-.+ ++.+|.||+       +|.|..... .+-|.|+|||++.. -|++||.+.++|..+..++ ......|..|.+
T Consensus        39 kT~~~~~t~~P~Wne-------~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~  110 (126)
T cd04043          39 KTRTIYDTLNPRWDE-------EFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT  110 (126)
T ss_pred             cccEecCCCCCcccc-------eEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC
Confidence            34444 455899999       888888663 45799999999987 5799999999999887654 555678988864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=98.78  E-value=1.1e-08  Score=65.83  Aligned_cols=65  Identities=22%  Similarity=0.148  Sum_probs=52.9

Q ss_pred             eecCceeeeeccccceeeEeeeccC-CCCceEEEEeeCCee-eeceeeEEEeecCCeeee-cCcCCCceeEeecc
Q psy8569           7 VIGSNFRWSVFSVKTRFEVPSETND-VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFS-NEVGSRKTAGVKGL   78 (85)
Q Consensus         7 v~g~~P~W~~~~~~~~~~f~fet~d-~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s-~e~g~g~W~~l~~~   78 (85)
                      -++.+|.|++       .|.|...+ .++-|.|+|||++-. -|++||.+.+||.++... ......+|+.|++-
T Consensus        43 ~~t~~P~Wne-------~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~  110 (128)
T cd04024          43 PNTLNPKWNY-------WCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKST  110 (128)
T ss_pred             cCCcCCccCC-------cEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence            3567899999       88888876 566899999999877 689999999999998753 12346799999765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=98.77  E-value=1.1e-08  Score=66.27  Aligned_cols=66  Identities=14%  Similarity=0.201  Sum_probs=51.0

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCC-CCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDV-NQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~-~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||-.++ +.||.||+       +|.|..... .+-|.|+|||++..=|++||.+.+||..+..  +.....|..|+.
T Consensus        38 kT~vv~~t~nP~Wne-------~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~--g~~~~~~~~L~~  105 (119)
T cd04036          38 RTKTIKNSINPVWNE-------TFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKL--GEKVRVTFSLNP  105 (119)
T ss_pred             ccceecCCCCCccce-------EEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCC--CCcEEEEEECCC
Confidence            344444 45899999       777776443 3359999999998888999999999998876  666778887764

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=98.77  E-value=1.9e-08  Score=70.04  Aligned_cols=66  Identities=12%  Similarity=0.137  Sum_probs=55.7

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||-+++ +.||.|||       .|.|...+..+-|.|+|||++..=|++||.+.+||..|..  +.....|+.|.+
T Consensus        73 rT~v~~~~~nP~WnE-------~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~--g~~~~~w~~L~~  139 (158)
T cd04015          73 RTRVIENSENPVWNE-------SFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLS--GEPVEGWLPILD  139 (158)
T ss_pred             EEEEeCCCCCCccce-------EEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccC--CCCcceEEECcC
Confidence            444454 45899999       8888887777889999999998889999999999999975  667789999865

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=98.76  E-value=2.4e-08  Score=64.68  Aligned_cols=65  Identities=15%  Similarity=0.100  Sum_probs=51.0

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccC--C-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETND--V-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d--~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ||-.++ +.||.||+       .|.|....  + +.-|.|+|||++.. -|++||.+.+||+.+..  +....+|..|+
T Consensus        54 kT~v~~~t~nP~wne-------~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~--~~~~~~W~~l~  123 (124)
T cd08385          54 ETKVHRKTLNPVFNE-------TFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL--GHVTEEWRDLE  123 (124)
T ss_pred             ecccCcCCCCCceee-------eEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccC--CCCcceEEEcc
Confidence            344444 56899999       78887643  3 34799999999865 57999999999999876  67788999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=98.74  E-value=1.9e-08  Score=68.40  Aligned_cols=66  Identities=15%  Similarity=0.030  Sum_probs=51.5

Q ss_pred             eeeeeecC-ceeeeeccccceeeEeeeccCCC----CceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNVIGS-NFRWSVFSVKTRFEVPSETNDVN----QGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v~g~-~P~W~~~~~~~~~~f~fet~d~~----~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ||..++++ ||.||+       .|.|.....+    .-|.|+|||.+.. -|++||.+.+||+++..  +..-..|..|+
T Consensus        41 kTkv~~~tlnPvwNE-------~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~--~~~~~~w~~L~  111 (120)
T cd08395          41 ATKSKNNNWSPKYNE-------TFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQ--AGSCACWLPLG  111 (120)
T ss_pred             eeEEecCCCCCccCc-------EEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcC--CCcEEEEEECc
Confidence            45555654 999999       8888875322    2599999999876 48999999999999997  44457898886


Q ss_pred             c
Q psy8569          77 G   77 (85)
Q Consensus        77 ~   77 (85)
                      .
T Consensus       112 ~  112 (120)
T cd08395         112 R  112 (120)
T ss_pred             C
Confidence            5

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=98.73  E-value=1.2e-08  Score=67.86  Aligned_cols=64  Identities=19%  Similarity=0.167  Sum_probs=49.2

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeecc--CCCCceEEEEeeCCeee--eceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETN--DVNQGLLIEVWDKGIIW--DRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~--d~~~gL~vEVWnKgviw--DdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ||-.+ +..||.|||       +|.|..+  +...-|.|+|||++-..  |++||.+.|||.++..  +..-..|+.|
T Consensus        51 kT~v~~~t~~P~~nE-------~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~--~~~~~~Wy~l  119 (119)
T cd08685          51 KTSTVPDSANPLFHE-------TFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVN--QKEISGWYYL  119 (119)
T ss_pred             eCccccCCCCCcccc-------EEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhcc--CccccceEeC
Confidence            45555 577899999       7777653  34456999999999775  6899999999999984  4445788754

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=98.72  E-value=3.1e-08  Score=63.46  Aligned_cols=64  Identities=14%  Similarity=0.173  Sum_probs=49.0

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCC---CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDV---NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~---~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ||-.++ +.+|.||+       +|.|.....   +.-|.|+|||++.. -|++||.+.+||+.+..  +.....|+.|
T Consensus        55 kT~v~~~t~~P~wne-------~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~--~~~~~~w~~l  123 (123)
T cd08521          55 KTSVKKNTTNPVFNE-------TLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDL--DSQQSEWYPL  123 (123)
T ss_pred             eccccCCCCCCcccc-------eEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccc--cCCCccEEEC
Confidence            344444 47899999       888887542   34799999999854 67999999999999975  3445788865

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=98.72  E-value=1.5e-08  Score=65.88  Aligned_cols=65  Identities=15%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             ceeeeeecC-ceeeeeccccceeeEeeec-cCCCCceEEEEeeCCe-----eeeceeeEEEeecCCeeeecCcCCCceeE
Q psy8569           2 RKESNVIGS-NFRWSVFSVKTRFEVPSET-NDVNQGLLIEVWDKGI-----IWDRAIGYHYLPLPQVAFSNEVGSRKTAG   74 (85)
Q Consensus         2 ~~~~~v~g~-~P~W~~~~~~~~~~f~fet-~d~~~gL~vEVWnKgv-----iwDdLLG~~~lPL~~v~~s~e~g~g~W~~   74 (85)
                      .||-.++++ ||.|++       +|.|.. .+..+.|.|||||++.     --||+||.+.+||+.+..  +.+...|..
T Consensus        41 ~kT~vi~~t~nP~wne-------~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~--~~~~~~~~~  111 (120)
T cd04048          41 GRTEVIKNNLNPDFVT-------TFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVS--SPGQKLTLP  111 (120)
T ss_pred             ccEeEeCCCCCCCceE-------EEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhc--CCCcEEEEE
Confidence            455566664 899999       777764 3455679999999994     578999999999999976  455556666


Q ss_pred             e
Q psy8569          75 V   75 (85)
Q Consensus        75 l   75 (85)
                      |
T Consensus       112 l  112 (120)
T cd04048         112 L  112 (120)
T ss_pred             c
Confidence            5

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=98.72  E-value=3.4e-08  Score=65.56  Aligned_cols=67  Identities=15%  Similarity=0.090  Sum_probs=53.1

Q ss_pred             eeeeeecCceeeeeccccceeeEeeeccCCC-CceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569           3 KESNVIGSNFRWSVFSVKTRFEVPSETNDVN-QGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus         3 ~~~~v~g~~P~W~~~~~~~~~~f~fet~d~~-~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      ||...++.||.||+       +|.|....-+ .-|.|+|||++-. -|+.||.+.+||+++..  +..-..|..|++.
T Consensus        37 kT~v~~~~nP~WnE-------~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~--~~~~~~W~~L~~~  105 (126)
T cd08400          37 RTKVREGPNPVWSE-------EFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQN--GQETDEWYPLSSA  105 (126)
T ss_pred             EeecCCCCCCccCC-------EEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccC--CCcccEeEEcccC
Confidence            45556889999999       8999753332 4699999998654 68999999999999887  4445789999864

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=98.72  E-value=2.9e-08  Score=64.46  Aligned_cols=60  Identities=22%  Similarity=0.186  Sum_probs=49.9

Q ss_pred             cCceeeeeccccceeeEeeeccCC----CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           9 GSNFRWSVFSVKTRFEVPSETNDV----NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet~d~----~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      +.||.||+       +|.|...+.    +.-|.|+|||++.. -|++||.+.+||.++..  +.....|+.|+-
T Consensus        44 t~nP~Wne-------~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~--~~~~~~~~~l~p  108 (124)
T cd04049          44 GRNPEWNE-------KFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFE--EGVEPGTAELVP  108 (124)
T ss_pred             CCCCcccc-------eEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhh--CCCCcCceEeec
Confidence            57999999       888888665    46799999999876 47999999999999976  556688887753

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=98.71  E-value=4.4e-08  Score=62.93  Aligned_cols=59  Identities=14%  Similarity=0.103  Sum_probs=45.1

Q ss_pred             ecCceeeeeccccceeeEeeeccC----CCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETND----VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d----~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      +..||.||+       +|.|....    .+.-|.|+|||.+.. =|++||.+.+||++..   ..+.-.|+.|+
T Consensus        62 ~t~nP~wne-------~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~---~~~~~~W~~L~  125 (125)
T cd04031          62 KTLNPEWNQ-------TFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL---LDDEPHWYPLQ  125 (125)
T ss_pred             CCCCCcccc-------EEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc---ccCCcceEECc
Confidence            567799999       88887533    245799999998865 4799999999999932   23345898875

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=98.71  E-value=2.7e-08  Score=69.09  Aligned_cols=63  Identities=16%  Similarity=0.169  Sum_probs=51.1

Q ss_pred             cCceeeeeccccceeeEeeeccCC-CCceEEEEeeCCee-eeceeeEEEeecCCeeeec--CcCCCceeEeecc
Q psy8569           9 GSNFRWSVFSVKTRFEVPSETNDV-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSN--EVGSRKTAGVKGL   78 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet~d~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~--e~g~g~W~~l~~~   78 (85)
                      +.||.|||       .|.|...+. ++-|.|+|||.+.. -|++||.+.+||+.+....  .....+|+.|++-
T Consensus        43 t~nP~WNE-------~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~  109 (150)
T cd04019          43 NGNPSWNE-------ELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERP  109 (150)
T ss_pred             CCCCcccC-------cEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCC
Confidence            58999999       888887553 45899999998865 7899999999999997632  2345899999864

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=98.71  E-value=3e-08  Score=67.39  Aligned_cols=58  Identities=17%  Similarity=0.234  Sum_probs=46.4

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCC-ceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCce
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQ-GLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKT   72 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~-gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W   72 (85)
                      .+.||.||+       +|.|...+... -|.|||||++... |++||.+.+||.++........+.|
T Consensus        56 ~t~nP~Wne-------~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~  115 (136)
T cd08375          56 DTLNPKWNS-------SMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPI  115 (136)
T ss_pred             CCCCCccCc-------eEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcE
Confidence            366799999       99998876554 6999999999876 7999999999999987433344543

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=98.70  E-value=1.6e-08  Score=65.30  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=46.5

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccC----CCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETND----VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d----~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ||-.++ +.||.||+       .|.|....    .++-|.|+|||++.. -||+||.+.+||+.+.+     .+.|..++
T Consensus        40 kT~v~~~t~nP~Wne-------~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~-----~~~~~~~~  107 (111)
T cd04041          40 STRIIRKDLNPVWEE-------TWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE-----DRNWMGRR  107 (111)
T ss_pred             eeeeECCCCCCccce-------eEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc-----CCCCCccc
Confidence            344444 56899999       77776543    345799999999977 48999999999999985     45565543

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=98.70  E-value=3.2e-08  Score=69.18  Aligned_cols=68  Identities=12%  Similarity=0.123  Sum_probs=51.9

Q ss_pred             eeeeeec-CceeeeeccccceeeEeeecc---------------CCC-CceEEEEeeCCee-eeceeeEEEeecCCeeee
Q psy8569           3 KESNVIG-SNFRWSVFSVKTRFEVPSETN---------------DVN-QGLLIEVWDKGII-WDRAIGYHYLPLPQVAFS   64 (85)
Q Consensus         3 ~~~~v~g-~~P~W~~~~~~~~~~f~fet~---------------d~~-~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s   64 (85)
                      ||-++++ .||.|||       +|.|...               +.. .-|.|+|||++.. .|++||.+.|||..+.-+
T Consensus        38 kT~v~~~t~nP~wNE-------~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~  110 (148)
T cd04010          38 RTKVKKKTNNPQFDE-------AFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ  110 (148)
T ss_pred             CCccEeCCCCCccce-------EEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence            4545554 6899999       8887763               222 3699999999875 899999999999999875


Q ss_pred             cCcCCCceeEeecc
Q psy8569          65 NEVGSRKTAGVKGL   78 (85)
Q Consensus        65 ~e~g~g~W~~l~~~   78 (85)
                      . .....|+.|+..
T Consensus       111 ~-~~~~~W~~L~~~  123 (148)
T cd04010         111 A-GSHQAWYFLQPR  123 (148)
T ss_pred             C-CcCcceeecCCc
Confidence            1 345789998643

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=98.69  E-value=3.2e-08  Score=63.09  Aligned_cols=58  Identities=22%  Similarity=0.268  Sum_probs=49.1

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCe-eeeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGI-IWDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgv-iwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ++.||.|++       +|.|...+.+.-|.|+|||++. .-|++||.+.+||..+..    +...|..|.
T Consensus        42 ~t~nP~W~e-------~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~----~~~~~~~l~  100 (119)
T cd08377          42 KTLNPEWNK-------IFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKN----GERKWYALK  100 (119)
T ss_pred             CCcCCccCc-------EEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCC----CCceEEECc
Confidence            457899999       9999988888899999999987 468999999999998864    345788875

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=98.69  E-value=2.8e-08  Score=70.20  Aligned_cols=55  Identities=27%  Similarity=0.444  Sum_probs=46.6

Q ss_pred             ecCceeeeeccccceeeEeeeccCC-CCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDV-NQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~-~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ++.+|.|++       +|.|...+. ++-|.|+|||++   |++||.+.+||+.+. +.  +-++|+.|
T Consensus        98 ~tlnP~WnE-------~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~-~~--~~d~W~~L  153 (153)
T cd08676          98 QTLNPVWNE-------TFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP-SC--GLDSWFKL  153 (153)
T ss_pred             CCCCCcccc-------EEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhC-CC--CCCCeEeC
Confidence            467899999       999988765 457999999999   999999999999998 33  45889865

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=98.68  E-value=5.4e-08  Score=64.24  Aligned_cols=62  Identities=11%  Similarity=0.154  Sum_probs=49.6

Q ss_pred             eeeee-cCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           4 ESNVI-GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         4 ~~~v~-g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      |-+++ +.+|.|++       .|.|...+.+.-|.|+|||++..-|++||.+.++|+.+.    .+..+|+.|+
T Consensus        39 T~v~~~t~nP~Wne-------~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~----~~~~~~~~l~  101 (126)
T cd04046          39 SPVQKDTLSPEFDT-------QAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPND----SQTLRTLPLR  101 (126)
T ss_pred             eCccCCCCCCcccc-------eEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCC----CcCceEEEcc
Confidence            33444 45799999       899988888888999999999999999999999998642    3344666664

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=98.68  E-value=3.7e-08  Score=57.51  Aligned_cols=54  Identities=30%  Similarity=0.326  Sum_probs=46.3

Q ss_pred             eeeeeecC-ceeeeeccccceeeEeeeccCC-CCceEEEEeeCCeee-eceeeEEEeecCCeee
Q psy8569           3 KESNVIGS-NFRWSVFSVKTRFEVPSETNDV-NQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAF   63 (85)
Q Consensus         3 ~~~~v~g~-~P~W~~~~~~~~~~f~fet~d~-~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~   63 (85)
                      ++-.++++ +|.|++       +|.|..... .+-|.|+||++...- +.++|.+.+||.++..
T Consensus        38 ~T~~~~~~~~P~w~e-------~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~   94 (101)
T smart00239       38 KTKVVKNTLNPVWNE-------TFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLL   94 (101)
T ss_pred             eeeEecCCCCCcccc-------eEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHccc
Confidence            44456666 999999       999998777 778999999999876 7999999999998876

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=98.68  E-value=4.2e-08  Score=66.29  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             ceeeeeec-CceeeeeccccceeeEeeeccC--CC-CceEEEEeeCCee-eeceeeEEEeecCCeeeec-CcCCCceeEe
Q psy8569           2 RKESNVIG-SNFRWSVFSVKTRFEVPSETND--VN-QGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSN-EVGSRKTAGV   75 (85)
Q Consensus         2 ~~~~~v~g-~~P~W~~~~~~~~~~f~fet~d--~~-~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~-e~g~g~W~~l   75 (85)
                      +||-.+++ .||.|||       +|.|....  ++ .-|.|.|||.+.+ =|++||.+.|||+++..++ +...-.|+.|
T Consensus        55 ~kT~v~~~t~nPvfNE-------~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          55 RKTAVKKGTVNPVFNE-------TLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             eecccccCCCCCccce-------EEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            45666666 7899999       88887643  33 4799999999954 6799999999999998876 6788899876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=98.67  E-value=5.6e-08  Score=64.49  Aligned_cols=61  Identities=11%  Similarity=0.049  Sum_probs=52.2

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      +..||.||+       +|.|+.++...-|.|+|||++-. -|++||.+.+||+++..  ......|+.|+.
T Consensus        43 kt~~P~WnE-------~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~--~~~~~~w~~L~~  104 (121)
T cd08401          43 KSLCPFFGE-------DFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHK--YYGKDTWFPLQP  104 (121)
T ss_pred             CCCCCccCC-------eEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccC--CCCcEeeEEEEc
Confidence            557899999       99999987656899999999877 68999999999999986  344578999975

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=98.66  E-value=5.7e-08  Score=62.42  Aligned_cols=60  Identities=15%  Similarity=0.128  Sum_probs=49.6

Q ss_pred             ecCceeeeeccccceeeEeeeccCC---CCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDV---NQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~---~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ++.+|.|++       +|.|+....   ..-|.|+|||++-.- |++||.+.+||+++..  ..+...|.-|+
T Consensus        59 ~~~~P~wne-------~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~--~~~~~~w~~L~  122 (123)
T cd08390          59 KTQNPNFDE-------TFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL--VKGGVVWRDLE  122 (123)
T ss_pred             CCCCCccce-------EEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceec--CCCceEEEeCC
Confidence            577899999       888887553   246999999998764 7999999999999988  55667898775

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=98.66  E-value=5.1e-08  Score=68.66  Aligned_cols=68  Identities=19%  Similarity=0.258  Sum_probs=52.3

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeec--cCCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCc-----CCCcee
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSET--NDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEV-----GSRKTA   73 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet--~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~-----g~g~W~   73 (85)
                      ||.+++ +.||.|||       +|.|..  .+..+-|.|+|||.+.. -||+||.+.+||..|.....+     -.-+|+
T Consensus        49 kT~v~~~t~nPvWNE-------~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~  121 (151)
T cd04018          49 KTSVKKNSYNPEWNE-------QIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFV  121 (151)
T ss_pred             ecceEcCCCCCCcce-------EEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEE
Confidence            444554 45899999       888864  45567899999999987 899999999999999874433     245888


Q ss_pred             Eeec
Q psy8569          74 GVKG   77 (85)
Q Consensus        74 ~l~~   77 (85)
                      .|=|
T Consensus       122 ~lyg  125 (151)
T cd04018         122 NLYG  125 (151)
T ss_pred             Eeec
Confidence            8754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=98.66  E-value=4.4e-08  Score=63.19  Aligned_cols=66  Identities=24%  Similarity=0.221  Sum_probs=51.0

Q ss_pred             eeeeee-cCceee-eeccccceeeEeeeccCC---CCceEEEEeeCCee-eeceeeEEEeecCCeeeec-CcCCCceeEe
Q psy8569           3 KESNVI-GSNFRW-SVFSVKTRFEVPSETNDV---NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSN-EVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v~-g~~P~W-~~~~~~~~~~f~fet~d~---~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~-e~g~g~W~~l   75 (85)
                      ||-.++ +.+|.| ++       +|.|.....   ++-|.|+|||++.+ -|++||.+.+||..+.... ......|..|
T Consensus        35 kT~v~~~~~nP~W~ne-------~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l  107 (110)
T cd08688          35 KTDVVKKSLNPVWNSE-------WFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPI  107 (110)
T ss_pred             ecceecCCCCCcccCc-------EEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEc
Confidence            444454 568999 99       888887552   46899999999986 5799999999999998843 3446778765

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04032 C2_Perforin C2 domain of Perforin

Probab=98.66  E-value=5.1e-08  Score=66.83  Aligned_cols=55  Identities=18%  Similarity=0.245  Sum_probs=44.4

Q ss_pred             ceeeeeec-CceeeeeccccceeeEeeeccC--CCCceEEEEeeCCee-eeceeeEEEeecCCeee
Q psy8569           2 RKESNVIG-SNFRWSVFSVKTRFEVPSETND--VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         2 ~~~~~v~g-~~P~W~~~~~~~~~~f~fet~d--~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~   63 (85)
                      .||-.+++ .||.||+       +|.|...+  ..+-|.|||||++.. -||+||.+.+||....+
T Consensus        61 ~kT~vi~~t~nPvWNE-------~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032          61 KRTEVIWNNNNPRWNA-------TFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             ccCceecCCCCCcCCC-------EEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence            35555555 4899999       88886543  366899999999987 78999999999997776

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=98.65  E-value=3.4e-08  Score=64.00  Aligned_cols=62  Identities=19%  Similarity=0.222  Sum_probs=50.3

Q ss_pred             cCceeeeeccccceeeEeeeccCC-----CCceEEEEeeCCe-eeeceeeEEEeecCCeeeecCc---CCCceeEeec
Q psy8569           9 GSNFRWSVFSVKTRFEVPSETNDV-----NQGLLIEVWDKGI-IWDRAIGYHYLPLPQVAFSNEV---GSRKTAGVKG   77 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet~d~-----~~gL~vEVWnKgv-iwDdLLG~~~lPL~~v~~s~e~---g~g~W~~l~~   77 (85)
                      +.||.|++       +|.|...+.     ..-|.|||||++. .=|++||.+.+||.++......   ..-.|+.|++
T Consensus        44 ~~~P~Wne-------~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~  114 (125)
T cd04051          44 GTNPTWNE-------TLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR  114 (125)
T ss_pred             CCCCCCCC-------EEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC
Confidence            57999999       999988666     5789999999886 5689999999999999885432   2357777775

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=98.65  E-value=5.7e-08  Score=63.08  Aligned_cols=64  Identities=19%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             eeee-ecCceeeeeccccceeeEeeeccCC---CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           4 ESNV-IGSNFRWSVFSVKTRFEVPSETNDV---NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         4 ~~~v-~g~~P~W~~~~~~~~~~f~fet~d~---~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      |-.+ +..||.|++       +|.|+....   +.-|.|+|||++.. -|++||.+.+||+++..+.  .-..|..|.
T Consensus        55 T~v~~~t~~P~wne-------~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~--~~~~W~~l~  123 (124)
T cd08387          55 SKIHKKTLNPEFDE-------SFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE--KLDLWRKIQ  123 (124)
T ss_pred             CceEcCCCCCCccc-------EEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCC--CcceEEECc
Confidence            3344 557899999       888886543   34699999999876 4899999999999999743  668898774

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=98.64  E-value=7e-08  Score=62.58  Aligned_cols=61  Identities=15%  Similarity=0.179  Sum_probs=49.6

Q ss_pred             ecCceeeeeccccceeeEeeeccCC-CCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDV-NQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~-~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      +..||.|++       +|.|...+. +.-|.|+|||.+..- |++||.+.+||+.+..  ......|+.|..
T Consensus        41 ~t~nP~Wne-------~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~--~~~~~~w~~L~~  103 (123)
T cd04025          41 KSCYPRWNE-------VFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQ--AKQEEGWFRLLP  103 (123)
T ss_pred             CCCCCccCc-------EEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHccc--CCCCCCEEECCC
Confidence            466899999       999998765 457999999998664 7999999999999976  344577988764

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=98.63  E-value=8e-08  Score=63.51  Aligned_cols=59  Identities=14%  Similarity=0.184  Sum_probs=48.7

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee------------eeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII------------WDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi------------wDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      +..+|.|++       +|.|..++....|.|+|||++.-            -|++||.+.+||..+.    ....+|+.|
T Consensus        42 ~t~~P~Wne-------~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~----~~~~~w~~L  110 (127)
T cd04027          42 QNLNPVWNE-------KFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS----GEMDVWYNL  110 (127)
T ss_pred             CCCCCccce-------EEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc----CCCCeEEEC
Confidence            467899999       99998876667899999999852            5899999999999874    234699998


Q ss_pred             ec
Q psy8569          76 KG   77 (85)
Q Consensus        76 ~~   77 (85)
                      +.
T Consensus       111 ~~  112 (127)
T cd04027         111 EK  112 (127)
T ss_pred             cc
Confidence            74

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=98.62  E-value=6.7e-08  Score=61.62  Aligned_cols=52  Identities=21%  Similarity=0.160  Sum_probs=44.8

Q ss_pred             eeecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeee
Q psy8569           6 NVIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFS   64 (85)
Q Consensus         6 ~v~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s   64 (85)
                      .-++.+|.||+       .|.|...+.++-|.|||||++-. =|++||.+.+||..+...
T Consensus        44 ~~~~~~P~Wne-------~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~   96 (124)
T cd04044          44 KKDTSNPVWNE-------TKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQN   96 (124)
T ss_pred             ecCCCCCcceE-------EEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccC
Confidence            34456899999       99998887788999999999876 579999999999999874

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=98.62  E-value=1.4e-07  Score=62.89  Aligned_cols=65  Identities=17%  Similarity=0.246  Sum_probs=50.9

Q ss_pred             ceeeeeec-CceeeeeccccceeeEeeeccC--C-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           2 RKESNVIG-SNFRWSVFSVKTRFEVPSETND--V-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         2 ~~~~~v~g-~~P~W~~~~~~~~~~f~fet~d--~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      +||..+++ .||.||+       +|.|+...  + +.-|.|+|||.+.. =|++||.+.+||.++..  ......|..|
T Consensus        55 ~kT~v~~~t~nP~wnE-------~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~--~~~~~~w~~l  124 (125)
T cd04029          55 RKTSIKRNTTNPVYNE-------TLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNF--DSQHEECLPL  124 (125)
T ss_pred             eEeeeeeCCCCCcccc-------eEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccc--cCCcccEEEC
Confidence            46666766 6899999       88887754  2 33699999999864 57899999999999988  4557778765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=98.61  E-value=1.1e-07  Score=62.54  Aligned_cols=65  Identities=9%  Similarity=0.106  Sum_probs=50.0

Q ss_pred             eeeeeec-CceeeeeccccceeeEeeeccCCCCceEEEEeeCCeee---eceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNVIG-SNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIW---DRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v~g-~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviw---DdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ||-.+++ .||.|++       +|.|...+ ++-|.|||||++..=   |++||.+.+||..+..... +..+|.-|+
T Consensus        36 kT~v~~~t~nP~Wne-------~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~~l~  104 (123)
T cd08382          36 STDVAKKTLDPKWNE-------HFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKD-TGYQRLDLR  104 (123)
T ss_pred             EccEEcCCCCCcccc-------eEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCC-CccceeEee
Confidence            4555554 5899999       88888765 678999999998774   5799999999999875332 345687774

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=98.60  E-value=1.2e-07  Score=64.45  Aligned_cols=70  Identities=16%  Similarity=0.138  Sum_probs=55.0

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCC----------------CCceEEEEeeCCee-eeceeeEEEeecCCeeee
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDV----------------NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFS   64 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~----------------~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s   64 (85)
                      ||..++ +.+|.|++       .|.|+....                ++-|.|||||++.. -|++||.+.+||.++.. 
T Consensus        37 rT~vv~~t~nP~Wne-------~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~-  108 (137)
T cd08675          37 RTKVKKKTNNPRFDE-------AFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQ-  108 (137)
T ss_pred             ccceeeCCCCCCcce-------EEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccC-
Confidence            444555 66899999       888887654                34799999999987 78999999999999885 


Q ss_pred             cCcCCCceeEeeccccc
Q psy8569          65 NEVGSRKTAGVKGLFSP   81 (85)
Q Consensus        65 ~e~g~g~W~~l~~~~~~   81 (85)
                       ......|+.|+.-=+|
T Consensus       109 -~~~~~~W~~L~~~~~~  124 (137)
T cd08675         109 -AGSHQAWYFLQPREAP  124 (137)
T ss_pred             -CCcccceEecCCcCCC
Confidence             4557889988765443

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=98.59  E-value=1.4e-07  Score=62.53  Aligned_cols=65  Identities=15%  Similarity=0.142  Sum_probs=50.1

Q ss_pred             ceeeeeec-CceeeeeccccceeeEeeecc--CCC-CceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           2 RKESNVIG-SNFRWSVFSVKTRFEVPSETN--DVN-QGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         2 ~~~~~v~g-~~P~W~~~~~~~~~~f~fet~--d~~-~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      +||-++++ .||.||+       +|.|+..  ++. .-|.|+|||.|.. -|++||.+.+||.++..+  .+.-.|..|
T Consensus        55 ~kT~v~~~t~nP~~nE-------~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~--~~~~~W~~L  124 (125)
T cd08393          55 RKTSVKKKTLNPVFNE-------TLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWS--NTQPTWYPL  124 (125)
T ss_pred             ccCccCcCCCCCccCc-------eEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccC--CCCcceEEC
Confidence            35555644 4899999       8888764  333 3699999999864 689999999999999875  456778765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=98.58  E-value=1.4e-07  Score=60.90  Aligned_cols=65  Identities=12%  Similarity=0.096  Sum_probs=49.5

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeecc--CCC-CceEEEEeeCCee---eeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETN--DVN-QGLLIEVWDKGII---WDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~--d~~-~gL~vEVWnKgvi---wDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ||-.++ ..||.||+       +|.|...  ++. .-|.|+|||++-.   -|++||.+.+||.++..  ......|+.|
T Consensus        56 kT~v~~~~~nP~wne-------~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~--~~~~~~W~~L  126 (127)
T cd04030          56 KTSVKKDNLNPVFDE-------TFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDL--SKGFTQWYDL  126 (127)
T ss_pred             ecccccCCCCCEECe-------EEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccc--cCCccceEEC
Confidence            344444 56899999       7777763  333 4799999999875   58999999999999855  4567888876


Q ss_pred             e
Q psy8569          76 K   76 (85)
Q Consensus        76 ~   76 (85)
                      +
T Consensus       127 ~  127 (127)
T cd04030         127 T  127 (127)
T ss_pred             c
Confidence            4

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=98.57  E-value=1.3e-07  Score=62.76  Aligned_cols=66  Identities=18%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             ceeeeeecCceeeeeccccceeeEeee-cc--CC-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           2 RKESNVIGSNFRWSVFSVKTRFEVPSE-TN--DV-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         2 ~~~~~v~g~~P~W~~~~~~~~~~f~fe-t~--d~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      +||-..++.||.||+       .|.|. +.  ++ +.-|.|+|||.+-. -|++||...|||+++.-  +...-.|+.|+
T Consensus        53 ~kTkv~~~~nP~fnE-------~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~--~~~~~~w~~L~  123 (124)
T cd08389          53 AKTKVQRGPNPVFNE-------TFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNL--EGETTVWLTLE  123 (124)
T ss_pred             eecccccCCCCcccC-------EEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCC--CCCceEEEeCC
Confidence            466677889999999       88886 43  22 23599999999754 58999999999999966  66788898875

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=98.54  E-value=2.1e-07  Score=61.30  Aligned_cols=61  Identities=11%  Similarity=0.156  Sum_probs=50.0

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      +..||.||+       +|.|...+ +.-|.|+||+++.. =|++||.+.+||+++..........|..|+
T Consensus        56 ~t~~P~Wne-------~f~~~v~~-~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~  117 (132)
T cd04014          56 KTNSPVWNE-------EFTTEVHN-GRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE  117 (132)
T ss_pred             CCCCCCcce-------eEEEEcCC-CCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc
Confidence            467799999       88888763 35699999998764 479999999999999886455678999887

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=98.54  E-value=1.6e-07  Score=62.17  Aligned_cols=50  Identities=20%  Similarity=0.201  Sum_probs=43.4

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeee-eceeeEEEeecCCeeee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFS   64 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s   64 (85)
                      .+.+|.||+       .|.|.....++-|.|||||++..- |++||.+.+||.++...
T Consensus        43 ~t~~P~Wne-------~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~   93 (120)
T cd04045          43 NTLNPVWDE-------VLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK   93 (120)
T ss_pred             CCcCCccCc-------eEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC
Confidence            456899999       888888777789999999999875 67999999999998774

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd00030 C2 C2 domain

Probab=98.53  E-value=1.6e-07  Score=53.80  Aligned_cols=63  Identities=22%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             eeeeec-CceeeeeccccceeeEeeeccC-CCCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeE
Q psy8569           4 ESNVIG-SNFRWSVFSVKTRFEVPSETND-VNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAG   74 (85)
Q Consensus         4 ~~~v~g-~~P~W~~~~~~~~~~f~fet~d-~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~   74 (85)
                      +..+++ .+|.|++       +|.|+... ....|.|+||+++-.. ++++|.+.++|..+.. ......+|+.
T Consensus        36 T~~~~~~~~P~w~~-------~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~-~~~~~~~~~~  101 (102)
T cd00030          36 TKVVKNTLNPVWNE-------TFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLD-SGKEGELWLP  101 (102)
T ss_pred             cceeCCCCCCcccc-------eEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhh-cCCcCcceec
Confidence            334444 6899999       99999987 6668999999999887 7999999999999982 2455556654

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=98.51  E-value=2.7e-07  Score=60.31  Aligned_cols=64  Identities=20%  Similarity=0.104  Sum_probs=47.4

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccC---CCCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETND---VNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d---~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ||-.+ ++.||.|++       +|.|...+   .++-|.|+|||.+..- |++||.+.+||+.+..  +.....|+.|
T Consensus        29 kT~v~~~~~nP~Wne-------~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~--~~~~~~~~~L   97 (127)
T cd08373          29 KTRVLENELNPVWNE-------TFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVS--EGLLEVTEPL   97 (127)
T ss_pred             ecceeCCCcCCcccc-------eEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHccc--CCceEEEEeC
Confidence            34444 456899999       77777643   4668999999998874 7999999999998875  3334445555

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=98.49  E-value=1.4e-07  Score=66.08  Aligned_cols=66  Identities=20%  Similarity=0.164  Sum_probs=50.5

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeecc---CCC-CceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETN---DVN-QGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~---d~~-~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ||-++ ++.||.||+       .|.|...   ++. .-|.|+|||.+..- |++||.+.++|+.+..  .....+|..++
T Consensus        67 kT~vi~~t~nP~WnE-------~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~--~~~~~~w~~~~  137 (162)
T cd04020          67 KTPVVKKSVNPVWNH-------TFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKS--YGQAVDWMDST  137 (162)
T ss_pred             eCCccCCCCCCCCCC-------EEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcccc--CCCccccccCC
Confidence            34344 567899999       8888753   333 35999999999876 8999999999999985  33568888776


Q ss_pred             c
Q psy8569          77 G   77 (85)
Q Consensus        77 ~   77 (85)
                      |
T Consensus       138 ~  138 (162)
T cd04020         138 G  138 (162)
T ss_pred             h
Confidence            5

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=98.47  E-value=4.1e-07  Score=60.22  Aligned_cols=53  Identities=23%  Similarity=0.087  Sum_probs=42.9

Q ss_pred             eeeeecCceeeeeccccceeeEeeeccC-CCCceEEEEeeCCee-eeceeeEEEeecCCeee
Q psy8569           4 ESNVIGSNFRWSVFSVKTRFEVPSETND-VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         4 ~~~v~g~~P~W~~~~~~~~~~f~fet~d-~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~   63 (85)
                      ++.-++.||.|++       +|.|.... .++-|.|+|||++.. -|++||.+.+||.+.-.
T Consensus        39 ~~v~~t~nP~Wne-------~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          39 NYIPNTLNPVFGK-------MFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF   93 (124)
T ss_pred             eEEECCCCCccce-------EEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence            4445668899999       88887643 345799999999987 67999999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=98.47  E-value=2.6e-07  Score=58.68  Aligned_cols=54  Identities=22%  Similarity=0.335  Sum_probs=42.1

Q ss_pred             eeeeeec-CceeeeeccccceeeEeee---ccCCCCceEEEEeeCCee-eeceeeEEEeecCCee
Q psy8569           3 KESNVIG-SNFRWSVFSVKTRFEVPSE---TNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVA   62 (85)
Q Consensus         3 ~~~~v~g-~~P~W~~~~~~~~~~f~fe---t~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~   62 (85)
                      ||..+++ .||.|++      |.|..+   .++.+.-|.|||||++.. -|++||.+.+||+.+.
T Consensus        41 kT~vi~~t~nP~Wn~------f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          41 RTEVIKNTLNPVWKP------FTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL   99 (110)
T ss_pred             eeeEeccCCCCceEE------EEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence            5556654 4899996      555533   245567899999999988 5799999999999987

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=98.47  E-value=2e-07  Score=61.19  Aligned_cols=55  Identities=15%  Similarity=0.099  Sum_probs=42.4

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccC--CCCceEEEEeeCCee-eeceeeEEEeecCCeeee
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETND--VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFS   64 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d--~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s   64 (85)
                      ||-.++ ..||.||+       .|.|...+  .+.-|.|+|||++.. =||+||.+.+||+.+...
T Consensus        40 kT~v~~~t~nPvWne-------~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~   98 (108)
T cd04039          40 RTSWRRHTLNPVFNE-------RLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA   98 (108)
T ss_pred             eeeeecCCCCCcccc-------eEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhh
Confidence            344444 46899999       77777644  334689999999865 789999999999998763

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=98.47  E-value=3.9e-07  Score=58.89  Aligned_cols=65  Identities=20%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccC---C-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETND---V-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d---~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ||-.++ +.||.||+       +|.|....   . +.-|.|+|||++.. -|++||.+.+||+.+..  ......|..|.
T Consensus        54 kT~v~~~t~~P~Wne-------~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~--~~~~~~W~~l~  124 (125)
T cd08386          54 ETKVKRKNLNPHWNE-------TFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL--TEEQTFWKDLK  124 (125)
T ss_pred             eeeeecCCCCCccce-------eEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccC--CCCcceEEecC
Confidence            343444 55899999       88886422   2 23599999999865 47999999999999986  66788888764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=98.46  E-value=2.4e-07  Score=58.90  Aligned_cols=62  Identities=21%  Similarity=0.174  Sum_probs=49.4

Q ss_pred             eeecCceeeeeccccceeeEeeeccC-CCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           6 NVIGSNFRWSVFSVKTRFEVPSETND-VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         6 ~v~g~~P~W~~~~~~~~~~f~fet~d-~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      .-++.+|.|++       +|.|...+ .++-|.|+|||++.. -|++||.+.+||..+..  ......|+.|.
T Consensus        39 ~~~~~~P~Wne-------~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~--~~~~~~~~~L~  102 (115)
T cd04040          39 IKKTLNPVWNE-------SFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEP--EETTELTLPLD  102 (115)
T ss_pred             ecCCCCCcccc-------cEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCC--CCcEEEEEECc
Confidence            34566899999       88888765 456799999999865 68999999999999865  44566777665

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=98.44  E-value=1e-07  Score=61.50  Aligned_cols=58  Identities=16%  Similarity=-0.001  Sum_probs=46.6

Q ss_pred             ecCceeeeeccccceeeEeeeccCC---CCceEEEEeeCCe-eeeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDV---NQGLLIEVWDKGI-IWDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~---~~gL~vEVWnKgv-iwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      .+.+|.|++       +|.|.....   ..-|.|+||+++. .-|++||.|.+||.+    .+.+..+|..|.
T Consensus        60 ~~~~P~wne-------~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~----~~~~~~~W~~l~  121 (134)
T cd00276          60 GTLNPVFNE-------AFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS----GGEELEHWNEML  121 (134)
T ss_pred             cCCCCeeee-------eEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC----CCcHHHHHHHHH
Confidence            466899999       888887554   3579999999986 567999999999998    366677886654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=98.39  E-value=1.1e-06  Score=58.59  Aligned_cols=69  Identities=10%  Similarity=0.164  Sum_probs=48.5

Q ss_pred             ceeeeeec-CceeeeeccccceeeEeeeccCC----------CCceEEEEeeCCeee-eceeeEEEe-ecCCeee-ecCc
Q psy8569           2 RKESNVIG-SNFRWSVFSVKTRFEVPSETNDV----------NQGLLIEVWDKGIIW-DRAIGYHYL-PLPQVAF-SNEV   67 (85)
Q Consensus         2 ~~~~~v~g-~~P~W~~~~~~~~~~f~fet~d~----------~~gL~vEVWnKgviw-DdLLG~~~l-PL~~v~~-s~e~   67 (85)
                      .||-++++ .||.||+       +|.|....+          ..-|.|||||.+..- |++||.+.+ |+..+.- ....
T Consensus        35 ~kT~v~~~t~nP~Wne-------~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~  107 (135)
T cd04017          35 QETEVIKETLSPTWDQ-------TLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFP  107 (135)
T ss_pred             eEeeeEcCCCCCccCc-------EEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCC
Confidence            35556654 5899999       888864332          245999999998764 689999997 6544432 1245


Q ss_pred             CCCceeEeec
Q psy8569          68 GSRKTAGVKG   77 (85)
Q Consensus        68 g~g~W~~l~~   77 (85)
                      ...+|..|++
T Consensus       108 ~~~~W~~L~~  117 (135)
T cd04017         108 PKLQWFPIYK  117 (135)
T ss_pred             CCceEEEeec
Confidence            6679999873

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=98.39  E-value=9.4e-07  Score=59.09  Aligned_cols=66  Identities=18%  Similarity=0.089  Sum_probs=47.7

Q ss_pred             eeeee-ecCceeeeeccccceeeEeee-c--cCCC-CceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSE-T--NDVN-QGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fe-t--~d~~-~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ||-++ ++.||.||+       +|.|. .  .++. ..|.|+||+++-+ -|++||.+.+||+.+.-+++.---.|..+
T Consensus        55 kT~v~~~t~nP~wnE-------~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~  126 (128)
T cd08388          55 KTRVLRKTRNPVYDE-------TFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI  126 (128)
T ss_pred             eccEEcCCCCCceee-------EEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence            44445 567899999       77773 2  3333 3699999998744 68999999999999988654444555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=98.38  E-value=3.7e-07  Score=60.73  Aligned_cols=53  Identities=17%  Similarity=0.094  Sum_probs=42.6

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccC-----CCCceEEEEeeCCeee-eceeeEEEeecCCee
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETND-----VNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVA   62 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d-----~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~   62 (85)
                      ||-.++ ..||.||+       +|.|....     .+.-|.|+|||++..- |++||.+.+||+.+.
T Consensus        58 kT~v~~~t~nP~wnE-------~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          58 KTQVKKKTLFPLFDE-------SFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             ccccCcCCCCCccCC-------EEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence            444444 45799999       88888654     3457999999999877 899999999999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=98.37  E-value=2.5e-07  Score=61.14  Aligned_cols=50  Identities=20%  Similarity=0.134  Sum_probs=38.9

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccC--CCC-ceEEEEeeCCeee-eceeeEEEeecC
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETND--VNQ-GLLIEVWDKGIIW-DRAIGYHYLPLP   59 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d--~~~-gL~vEVWnKgviw-DdLLG~~~lPL~   59 (85)
                      |+..++ +.||.|++       +|.|+...  +.. -|.|+|||.+.+= |++||.+.||+.
T Consensus        54 kT~v~~~t~nP~wne-------~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          54 KTSVKKNTLNPTYNE-------ALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             cCCcccCCCCCcccc-------eEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence            444454 46899999       88887643  332 5999999998875 899999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=98.35  E-value=5.8e-07  Score=62.52  Aligned_cols=52  Identities=21%  Similarity=0.227  Sum_probs=44.4

Q ss_pred             eeecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeee
Q psy8569           6 NVIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFS   64 (85)
Q Consensus         6 ~v~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s   64 (85)
                      .-++.||.||+       +|.|...+.+.-|.|+|||++.. -||+||.+.++|..+...
T Consensus        40 vk~t~nP~WnE-------~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~   92 (145)
T cd04038          40 IKKNLNPVWNE-------ELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEA   92 (145)
T ss_pred             EcCCCCCeecc-------cEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence            34556899999       99999988888899999999965 579999999999887553

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=98.33  E-value=1.1e-06  Score=60.73  Aligned_cols=67  Identities=19%  Similarity=0.075  Sum_probs=48.6

Q ss_pred             eeeeeecC-ceee-eeccccceeeEeeeccCCCCceEEEEeeCCee----eeceeeEEEeecCCeeee-cCcCCCceeEe
Q psy8569           3 KESNVIGS-NFRW-SVFSVKTRFEVPSETNDVNQGLLIEVWDKGII----WDRAIGYHYLPLPQVAFS-NEVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v~g~-~P~W-~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi----wDdLLG~~~lPL~~v~~s-~e~g~g~W~~l   75 (85)
                      ||..++++ ||.| |+       .|.|... .+.-|.|||||++-.    -||+||.+-+||+++... +..-...|+.|
T Consensus        48 kT~v~~~tlnP~W~nE-------~f~f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l  119 (137)
T cd08691          48 RTSIVENTINPVWHRE-------QFVFVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTL  119 (137)
T ss_pred             eeeeEcCCCCCceEce-------EEEEEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEEC
Confidence            55556665 8999 99       8888774 345799999997532    279999999999999653 22235557766


Q ss_pred             ec
Q psy8569          76 KG   77 (85)
Q Consensus        76 ~~   77 (85)
                      ++
T Consensus       120 ~k  121 (137)
T cd08691         120 GR  121 (137)
T ss_pred             Cc
Confidence            64

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=98.30  E-value=1.4e-06  Score=57.73  Aligned_cols=52  Identities=21%  Similarity=0.136  Sum_probs=40.6

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeecc--CC-CCceEEEEeeCCee-eeceeeEEEeecCCe
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETN--DV-NQGLLIEVWDKGII-WDRAIGYHYLPLPQV   61 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~--d~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v   61 (85)
                      ||-.+ ++.||.||+       +|.|...  +. +..|.|+|||.+.. -|++||.+.+|+...
T Consensus        55 kT~v~~~t~~P~wne-------~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          55 KTVIKKRTLNPVFNE-------SFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             cCcceeCCCCCcccc-------eEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence            34444 456899999       8888764  33 35799999999876 579999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=98.29  E-value=2e-06  Score=54.47  Aligned_cols=66  Identities=18%  Similarity=0.112  Sum_probs=48.7

Q ss_pred             eeeeeecCceeeeeccccceeeEeeeccCCC---CceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569           3 KESNVIGSNFRWSVFSVKTRFEVPSETNDVN---QGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus         3 ~~~~v~g~~P~W~~~~~~~~~~f~fet~d~~---~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      ||..+++.+|.||+       +|.|...+.+   .-|.|++||++.. ++.+|...+||..+..  .....+|..|++.
T Consensus        33 kT~~~~~~~P~Wne-------~f~f~v~~~~~~~~~l~i~v~d~~~~-~~~~~~g~v~l~~~~~--~~~~~~w~~L~~~  101 (117)
T cd08383          33 RTKTVEKLNPFWGE-------EFVFDDPPPDVTFFTLSFYNKDKRSK-DRDIVIGKVALSKLDL--GQGKDEWFPLTPV  101 (117)
T ss_pred             ecceEECCCCcccc-------eEEEecCCccccEEEEEEEEEecccC-CCeeEEEEEEecCcCC--CCcceeEEECccC
Confidence            55566668999999       9999887643   3588999999866 4445566677776665  5667899999754

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=98.25  E-value=1.4e-06  Score=57.74  Aligned_cols=48  Identities=21%  Similarity=0.295  Sum_probs=40.4

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~   63 (85)
                      .+.+|.|++       .|.|... ..+-|.|||||++-. -|++||.+.+||..+..
T Consensus        43 ~t~~P~Wne-------~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~   91 (125)
T cd04021          43 KTSNPKWNE-------HFTVLVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILK   91 (125)
T ss_pred             CCCCCcccc-------EEEEEeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHh
Confidence            456899999       7777754 456799999999987 68999999999999865

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=98.24  E-value=2e-06  Score=56.27  Aligned_cols=63  Identities=14%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             eeeee-cCceeeeeccccceeeEeeeccC--CCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           4 ESNVI-GSNFRWSVFSVKTRFEVPSETND--VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         4 ~~~v~-g~~P~W~~~~~~~~~~f~fet~d--~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      |..++ +.+|.|++       +|.|....  .++-|.|+|||++.. =|++||.+.+||..+...   ....|+-|.
T Consensus        54 T~v~~~~~~P~wne-------~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~---~~~~w~~L~  120 (131)
T cd04026          54 TKTIKKTLNPVWNE-------TFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM---PVDGWYKLL  120 (131)
T ss_pred             ceeecCCCCCCccc-------eEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC---ccCceEECc
Confidence            44445 44799999       88888754  456799999999865 579999999999999742   566788764

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=98.24  E-value=1.6e-06  Score=56.89  Aligned_cols=61  Identities=23%  Similarity=0.170  Sum_probs=45.1

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccC--C-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeE
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETND--V-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAG   74 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d--~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~   74 (85)
                      ||-+++ +.||.||+       +|.|+...  + ...|.|+|||.+.. -|++||.+.+||+.    .++...+|..
T Consensus        53 kT~v~~~t~nP~wne-------~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~----~~~~~~~W~~  118 (133)
T cd08384          53 KTQVKKKTLNPEFNE-------EFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA----KGERLRHWLD  118 (133)
T ss_pred             eeeeEeccCCCCccc-------EEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC----CCchHHHHHH
Confidence            444554 57899999       88887643  2 34799999999976 57999999999984    2344556753

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=98.23  E-value=3.4e-06  Score=59.35  Aligned_cols=72  Identities=11%  Similarity=0.016  Sum_probs=53.5

Q ss_pred             ceeeee-ecCceeeeeccccceeeEeeeccCCCCceEEEEee-CCe-eeeceeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569           2 RKESNV-IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWD-KGI-IWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus         2 ~~~~~v-~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWn-Kgv-iwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      |||-++ +..||.|||       +|.|.++..+.-|.|+||+ .+. -=|++||.+.|||+.+.-  +...-.|..|.--
T Consensus        69 ~KT~v~kktlnPvfNE-------~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~--~~~~~~Wy~L~~~  139 (146)
T cd04028          69 KKTKIARKTLDPLYQQ-------QLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDL--SNLVIGWYKLFPT  139 (146)
T ss_pred             eeceecCCCCCCccCC-------eEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccC--CCCceeEEecCCc
Confidence            355555 566899999       8888888555589999995 443 346899999999999975  3345679988765


Q ss_pred             cccc
Q psy8569          79 FSPI   82 (85)
Q Consensus        79 ~~~~   82 (85)
                      -+|.
T Consensus       140 ~~~~  143 (146)
T cd04028         140 SSLV  143 (146)
T ss_pred             cccc
Confidence            5543

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=98.23  E-value=2.4e-06  Score=55.42  Aligned_cols=49  Identities=16%  Similarity=0.162  Sum_probs=39.9

Q ss_pred             ecCceeeeeccccceeeEeeecc---CC-CCceEEEEeeCCeeeeceeeEEEeecCCeee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETN---DV-NQGLLIEVWDKGIIWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~---d~-~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~   63 (85)
                      .+.+|.|++       .|.|...   +. ++-|.|+|||.+..=|++||.+.+||+++..
T Consensus        61 ~~~~P~Wne-------~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~  113 (123)
T cd04035          61 KTRNPEFNE-------TLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKP  113 (123)
T ss_pred             CCCCCCccc-------eEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCC
Confidence            455899999       8888632   22 4579999999987767999999999999876

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=98.21  E-value=1.4e-06  Score=57.64  Aligned_cols=51  Identities=20%  Similarity=0.112  Sum_probs=38.9

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccC--CCC-ceEEEEeeCCee-eeceeeEEEeecCC
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETND--VNQ-GLLIEVWDKGII-WDRAIGYHYLPLPQ   60 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d--~~~-gL~vEVWnKgvi-wDdLLG~~~lPL~~   60 (85)
                      ||..++ +.||.||+       +|.|....  +.. -|.|+|||.+.. =|++||.+.+||..
T Consensus        55 kT~v~~~t~nP~wne-------~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~  110 (136)
T cd08402          55 KTTIKKRTLNPYYNE-------SFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA  110 (136)
T ss_pred             eccceeCCCCCcccc-------eEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc
Confidence            344454 55899999       88887642  322 599999999875 47999999999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=98.21  E-value=1.8e-06  Score=55.32  Aligned_cols=47  Identities=21%  Similarity=0.174  Sum_probs=39.9

Q ss_pred             CceeeeeccccceeeEeeeccCCC-CceEEEEeeCCeeeeceeeEEEeecCCeee
Q psy8569          10 SNFRWSVFSVKTRFEVPSETNDVN-QGLLIEVWDKGIIWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus        10 ~~P~W~~~~~~~~~~f~fet~d~~-~gL~vEVWnKgviwDdLLG~~~lPL~~v~~   63 (85)
                      .+|.|++       +|.|+....+ .-|.|+|||++..=|++||.+.+||..+..
T Consensus        54 ~~P~w~e-------~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~  101 (128)
T cd00275          54 FNPVWNE-------TFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQ  101 (128)
T ss_pred             cCCccCC-------cEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcC
Confidence            3999999       8888876444 359999999998878999999999999854

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=98.11  E-value=3.5e-06  Score=55.96  Aligned_cols=62  Identities=15%  Similarity=0.042  Sum_probs=45.2

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccC---CCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETND---VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d---~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ||-.+ ++.||.|++       +|.|....   .+.-|.|+|||.+.. -|++||.+.+|+..    .+++..+|..+
T Consensus        55 kT~v~k~t~nP~w~e-------~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~----~~~~~~~w~~l  121 (136)
T cd08404          55 KTHVKKCTLNPVFNE-------SFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA----SGSGGHHWKEV  121 (136)
T ss_pred             cCccccCCCCCccCc-------eEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC----CCchHHHHHHH
Confidence            33334 467899999       88887643   234689999999876 57999999999997    24455666544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=98.10  E-value=4.2e-06  Score=56.78  Aligned_cols=65  Identities=15%  Similarity=0.103  Sum_probs=47.2

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeec--cCCCC-ceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSET--NDVNQ-GLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet--~d~~~-gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ||-++ +..||.||+       .|.|..  .++.. -|.|.||+.+.. =|++||.+.|||.++.-+++ +--.|+.|
T Consensus        55 kT~v~~~t~nPvfnE-------~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~-~~~~Wy~l  124 (124)
T cd08680          55 RTKALEDQDKPVFNE-------VFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE-MSTKWYNL  124 (124)
T ss_pred             EcCccCCCCCCcccc-------EEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc-cccccccC
Confidence            34444 677899999       666654  44443 799999998865 57999999999999966544 34556643

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>PLN03008 Phospholipase D delta

Probab=97.99  E-value=7.6e-06  Score=72.42  Aligned_cols=67  Identities=15%  Similarity=0.099  Sum_probs=56.4

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      ||.++ ++.||.|||       +|.|...+...-|+|+|||++.+=+|+||.+.|||.+|..  ++....|..|-+-
T Consensus        92 RTrVi~n~~NPvWNE-------~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~--Ge~vd~Wl~Ll~~  159 (868)
T PLN03008         92 RTRVLKNSQEPLWDE-------KFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIAS--GERISGWFPVLGA  159 (868)
T ss_pred             eEEeCCCCCCCCcce-------eEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCC--CCceEEEEEcccc
Confidence            34444 456899999       9999998888899999999999999999999999999887  5666788877553

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=97.97  E-value=8.3e-06  Score=56.43  Aligned_cols=60  Identities=13%  Similarity=0.183  Sum_probs=46.8

Q ss_pred             eeecCceeeeeccccceeeEeeeccCCCC---ceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeE
Q psy8569           6 NVIGSNFRWSVFSVKTRFEVPSETNDVNQ---GLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAG   74 (85)
Q Consensus         6 ~v~g~~P~W~~~~~~~~~~f~fet~d~~~---gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~   74 (85)
                      .-+..||.||+       .|.|.+...+.   -|.|.|||.|-. -||+||-+.+||+++..  ..+...|..
T Consensus        54 ~rktlnPvfnE-------~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~--~~~~~~W~~  117 (118)
T cd08677          54 KKLALHTQWEE-------ELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSM--MLGAAQWVD  117 (118)
T ss_pred             ecCCCCCcccc-------EEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccC--Cccccchhc
Confidence            34578899999       88888754333   499999998875 68999999999999876  456667754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.97  E-value=9.3e-06  Score=57.29  Aligned_cols=62  Identities=11%  Similarity=0.190  Sum_probs=47.0

Q ss_pred             ceeeeeecC--ceeeeeccccceeeEeeeccC--CCCceEEEEeeCCe-eeeceeeEEEeecCCeeeecCcCCCcee
Q psy8569           2 RKESNVIGS--NFRWSVFSVKTRFEVPSETND--VNQGLLIEVWDKGI-IWDRAIGYHYLPLPQVAFSNEVGSRKTA   73 (85)
Q Consensus         2 ~~~~~v~g~--~P~W~~~~~~~~~~f~fet~d--~~~gL~vEVWnKgv-iwDdLLG~~~lPL~~v~~s~e~g~g~W~   73 (85)
                      +||..++++  +|.||+       .|.|.+..  .+.-|.|+|||.+- .=|++||.+.|+.++.   .+++-..|.
T Consensus        53 kKT~v~k~t~~~P~fNE-------sF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~---~~~~~~hW~  119 (135)
T cd08692          53 KKTRLVKSSNGQVKWGE-------TMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS---SSEAVEQWK  119 (135)
T ss_pred             ecCccEECCCCCceecc-------eEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC---CchhhhhHH
Confidence            578888887  589999       88888743  33379999999984 5789999999999863   234445664

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=97.93  E-value=2.3e-05  Score=55.51  Aligned_cols=68  Identities=10%  Similarity=0.050  Sum_probs=51.7

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCe-e----eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGI-I----WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgv-i----wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      +|.++ ++.||.|+|       +|.|.....-.-|.|.||+++= .    =|++||+..||+..|..  +.....|+.|.
T Consensus        42 RT~v~~~~~nP~W~E-------~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~--~~~ve~Wfpl~  112 (146)
T cd04013          42 RTTSKLKTDTLFWGE-------HFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSS--RQFVEKWYPVS  112 (146)
T ss_pred             EEEEEcCCCCCccee-------eEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcC--CCcccEEEEee
Confidence            34444 467899999       8888654444679999996542 2    47999999999999994  66788999887


Q ss_pred             ccc
Q psy8569          77 GLF   79 (85)
Q Consensus        77 ~~~   79 (85)
                      +.-
T Consensus       113 ~~~  115 (146)
T cd04013         113 TPK  115 (146)
T ss_pred             cCC
Confidence            654

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=97.92  E-value=7.2e-06  Score=55.37  Aligned_cols=52  Identities=13%  Similarity=0.123  Sum_probs=40.1

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeecc--CCCC-ceEEEEeeCC-eeeeceeeEEEeecCCe
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETN--DVNQ-GLLIEVWDKG-IIWDRAIGYHYLPLPQV   61 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~--d~~~-gL~vEVWnKg-viwDdLLG~~~lPL~~v   61 (85)
                      ||-++ ++.||.||+       .|.|.+.  ++++ -|.|+||+.+ +.-|++||.+.|+....
T Consensus        54 kT~v~~~~~nP~fnE-------~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~  110 (137)
T cd08409          54 KTEVVDGAASPSFNE-------SFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMY  110 (137)
T ss_pred             ecccEeCCCCCcccc-------eEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCccc
Confidence            44445 466899999       8888774  4553 7999999998 56689999999996544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=97.89  E-value=2.1e-05  Score=45.63  Aligned_cols=39  Identities=33%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             cCceeeeeccccceeeEeeec-cCCCCceEEEEeeCCeee-eceeeEE
Q psy8569           9 GSNFRWSVFSVKTRFEVPSET-NDVNQGLLIEVWDKGIIW-DRAIGYH   54 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet-~d~~~gL~vEVWnKgviw-DdLLG~~   54 (85)
                      +.+|.|++       +|.|.. .+...-|.|+||+++..- |++||.+
T Consensus        44 ~~~P~w~e-------~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~   84 (85)
T PF00168_consen   44 TSNPVWNE-------EFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEV   84 (85)
T ss_dssp             BSSEEEEE-------EEEEEESHGCGTEEEEEEEEETSSSSEEEEEEE
T ss_pred             cccceeee-------eeeeeeecccccceEEEEEECCCCCCCCEEEEE
Confidence            46799999       777773 333334999999999999 9999987

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=97.88  E-value=3.2e-05  Score=53.82  Aligned_cols=46  Identities=24%  Similarity=0.250  Sum_probs=37.9

Q ss_pred             eecCceeeeeccccceeeEeeeccCCCCceEEEEeeC--------CeeeeceeeEEEeecCC
Q psy8569           7 VIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDK--------GIIWDRAIGYHYLPLPQ   60 (85)
Q Consensus         7 v~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnK--------gviwDdLLG~~~lPL~~   60 (85)
                      -+..||.|||       +|.|++.. .+-|.+.|||+        ...-|+++|.+.+.|.-
T Consensus        39 ~~TlnPvWnE-------~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          39 RDTTEPNWNE-------EFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             cCCCCCccce-------EEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence            4467899999       99999875 55799999997        34669999999999853

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=97.88  E-value=1.5e-05  Score=53.50  Aligned_cols=52  Identities=13%  Similarity=0.160  Sum_probs=38.7

Q ss_pred             eeeeeec-CceeeeeccccceeeEeeecc--CCCC-ceEEEEeeCCe-eeeceeeEEEeecCCe
Q psy8569           3 KESNVIG-SNFRWSVFSVKTRFEVPSETN--DVNQ-GLLIEVWDKGI-IWDRAIGYHYLPLPQV   61 (85)
Q Consensus         3 ~~~~v~g-~~P~W~~~~~~~~~~f~fet~--d~~~-gL~vEVWnKgv-iwDdLLG~~~lPL~~v   61 (85)
                      ||..+++ .||.||+       +|.|...  ++.. -|.|+|||.+. .=|++||.+.|+....
T Consensus        54 kT~v~~~t~nP~wnE-------~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~  110 (135)
T cd08410          54 KTSCMRGTIDPFYNE-------SFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS  110 (135)
T ss_pred             cCccccCCCCCccce-------eEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccC
Confidence            5555665 5899999       8888763  3433 49999999885 4579999999876443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=97.78  E-value=3.1e-05  Score=53.13  Aligned_cols=51  Identities=12%  Similarity=-0.043  Sum_probs=39.1

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccC--CC-CceEEEEeeCC-eeeeceeeEEEeecCC
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETND--VN-QGLLIEVWDKG-IIWDRAIGYHYLPLPQ   60 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d--~~-~gL~vEVWnKg-viwDdLLG~~~lPL~~   60 (85)
                      ||.++ +..||.||+       +|.|....  +. .-|.|+|||.+ +--|++||.+.|+...
T Consensus        55 kT~v~k~t~nP~~nE-------~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          55 KTSVKRDDTNPIFNE-------AMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             CCccccCCCCCeece-------eEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence            55555 455899999       88887643  33 37999999988 4567999999998763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=97.77  E-value=2.8e-05  Score=53.94  Aligned_cols=60  Identities=13%  Similarity=0.086  Sum_probs=44.3

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCC---CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCcee
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDV---NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTA   73 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~---~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~   73 (85)
                      ||..++ ..||.||+       .|.|.+...   +.-|.|+|||.+.. -||+||.+.|++.+    .+++...|.
T Consensus        57 kT~v~k~t~nPvfNE-------~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~----~g~~~~hW~  121 (138)
T cd08407          57 QTKRAKHKINPVWNE-------MIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT----SGTERQHWE  121 (138)
T ss_pred             ccceeeCCCCCcccc-------EEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC----CCcHHHHHH
Confidence            555554 67899999       888887543   23699999999764 58999999999964    233444553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>KOG1030|consensus

Probab=97.73  E-value=4e-05  Score=56.97  Aligned_cols=51  Identities=25%  Similarity=0.319  Sum_probs=45.2

Q ss_pred             eeecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeee
Q psy8569           6 NVIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         6 ~v~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~   63 (85)
                      +=+|.||.||+       +|.|...|-+.-|.++|||+|.. =||.||-.-|||..+.-
T Consensus        45 v~~n~NPeWNe-------~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~   96 (168)
T KOG1030|consen   45 VYKNLNPEWNE-------ELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLE   96 (168)
T ss_pred             ecCCCCCcccc-------eEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHH
Confidence            34567899999       99999999999999999999976 57999999999987754

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=97.70  E-value=5.3e-05  Score=51.75  Aligned_cols=54  Identities=19%  Similarity=0.219  Sum_probs=42.1

Q ss_pred             ceeeeeec-CceeeeeccccceeeEeeeccC--CC-CceEEEEeeCC-eeeeceeeEEEeecCCee
Q psy8569           2 RKESNVIG-SNFRWSVFSVKTRFEVPSETND--VN-QGLLIEVWDKG-IIWDRAIGYHYLPLPQVA   62 (85)
Q Consensus         2 ~~~~~v~g-~~P~W~~~~~~~~~~f~fet~d--~~-~gL~vEVWnKg-viwDdLLG~~~lPL~~v~   62 (85)
                      +||-.+++ .||.||+       .|.|.++.  +. .-|.|+|||.+ +--|++||.+.|++....
T Consensus        55 ~kT~v~~~t~nPvfnE-------tF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~  113 (138)
T cd08408          55 SKTSIRRGQPDPEFKE-------TFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG  113 (138)
T ss_pred             ccceeecCCCCCcEee-------eEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence            35666666 5899999       88887754  33 37999999976 678899999999998543

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=97.65  E-value=3.9e-05  Score=72.75  Aligned_cols=66  Identities=17%  Similarity=0.172  Sum_probs=50.7

Q ss_pred             ceeeeee-cCceeeeeccccceeeEe--eeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           2 RKESNVI-GSNFRWSVFSVKTRFEVP--SETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         2 ~~~~~v~-g~~P~W~~~~~~~~~~f~--fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      +||..|+ +.||+||+       +|.  |+....++-|.+||||||..=||.||.+-|||.+|-.  +-.-..|+.|.
T Consensus      2013 ~kTkvvk~~~nP~Wne-------~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~--~~~~~~~~~L~ 2081 (2102)
T PLN03200       2013 RQTKVVSHSSSPEWKE-------GFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVM--EGTYSGEYSLN 2081 (2102)
T ss_pred             ccccccCCCCCCCccc-------ceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhc--CceeeeeeecC
Confidence            3555554 56799999       666  5555556779999999999989999999999999987  44444555554

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=97.58  E-value=0.00016  Score=50.72  Aligned_cols=56  Identities=20%  Similarity=0.189  Sum_probs=44.3

Q ss_pred             eeeecCc--eeeeeccccceeeEeeeccC---------------------CC-CceEEEEeeCCe-eeeceeeEEEeecC
Q psy8569           5 SNVIGSN--FRWSVFSVKTRFEVPSETND---------------------VN-QGLLIEVWDKGI-IWDRAIGYHYLPLP   59 (85)
Q Consensus         5 ~~v~g~~--P~W~~~~~~~~~~f~fet~d---------------------~~-~gL~vEVWnKgv-iwDdLLG~~~lPL~   59 (85)
                      |--+..|  |.+|.     ||.|+|....                     .. .-|.++|||.|. --||.+|.+.|+|+
T Consensus        45 VHyrslnG~~~FNw-----RfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~  119 (133)
T cd08374          45 VHYRSLDGEGNFNW-----RFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLS  119 (133)
T ss_pred             eEEecCCCCcEEeE-----EEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhh
Confidence            3445666  88998     8888888732                     22 369999999996 57999999999999


Q ss_pred             Ceeeec
Q psy8569          60 QVAFSN   65 (85)
Q Consensus        60 ~v~~s~   65 (85)
                      .+.++-
T Consensus       120 ~l~~~~  125 (133)
T cd08374         120 ILPRPA  125 (133)
T ss_pred             hccccc
Confidence            998853

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02223 phosphoinositide phospholipase C

Probab=97.32  E-value=0.00026  Score=60.02  Aligned_cols=48  Identities=19%  Similarity=0.194  Sum_probs=39.8

Q ss_pred             cCceeeeeccccceeeEeeeccCCCC-ceEEEEeeCCe-eeeceeeEEEeecCCeee
Q psy8569           9 GSNFRWSVFSVKTRFEVPSETNDVNQ-GLLIEVWDKGI-IWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet~d~~~-gL~vEVWnKgv-iwDdLLG~~~lPL~~v~~   63 (85)
                      |-||.||+       +|.|.+.--+. =|+|+|+|.|. .-||++|-++||++.++.
T Consensus       461 g~nPvWne-------~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~  510 (537)
T PLN02223        461 EWKPTWGE-------EFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIE  510 (537)
T ss_pred             CcCceecc-------eeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcC
Confidence            45699999       77787755555 48999999997 568999999999998876

>PLN02952 phosphoinositide phospholipase C

Probab=97.26  E-value=0.00033  Score=59.80  Aligned_cols=55  Identities=20%  Similarity=0.128  Sum_probs=43.1

Q ss_pred             ceeeeeec-CceeeeeccccceeeEeeeccCCCC-ceEEEEeeCCe-eeeceeeEEEeecCCeee
Q psy8569           2 RKESNVIG-SNFRWSVFSVKTRFEVPSETNDVNQ-GLLIEVWDKGI-IWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         2 ~~~~~v~g-~~P~W~~~~~~~~~~f~fet~d~~~-gL~vEVWnKgv-iwDdLLG~~~lPL~~v~~   63 (85)
                      +||-.|++ -||.|++       +|.|.....+. =|+|+|||+|. .-||++|.++|||+.++.
T Consensus       515 ~kTkvi~nN~nPvWnE-------~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~  572 (599)
T PLN02952        515 KKTKIIEDNWYPAWNE-------EFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRP  572 (599)
T ss_pred             eeeeeccCCCCcccCC-------eeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcC
Confidence            45666665 6799999       77776654444 48899999876 468999999999999987

>PLN02222 phosphoinositide phospholipase C 2

Probab=97.10  E-value=0.00055  Score=58.27  Aligned_cols=55  Identities=16%  Similarity=0.073  Sum_probs=42.9

Q ss_pred             ceeeeeec-CceeeeeccccceeeEeeeccCCCC-ceEEEEeeCCe-eeeceeeEEEeecCCeee
Q psy8569           2 RKESNVIG-SNFRWSVFSVKTRFEVPSETNDVNQ-GLLIEVWDKGI-IWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         2 ~~~~~v~g-~~P~W~~~~~~~~~~f~fet~d~~~-gL~vEVWnKgv-iwDdLLG~~~lPL~~v~~   63 (85)
                      +||-.|++ -||.|++       +|.|.+.-.+. =|+|+|||+|. .-||++|.++||+..++.
T Consensus       497 ~rTk~v~nn~nP~W~e-------~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~  554 (581)
T PLN02222        497 KKTKTLEDNWIPAWDE-------VFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQ  554 (581)
T ss_pred             eeeEecCCCCCcccCC-------eeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhC
Confidence            45666665 5699999       67776644443 58999999886 568999999999998876

>PLN02230 phosphoinositide phospholipase C 4

Probab=97.03  E-value=0.00055  Score=58.52  Aligned_cols=50  Identities=20%  Similarity=0.097  Sum_probs=40.7

Q ss_pred             eecCceeeeeccccceeeEeeeccCCCC-ceEEEEeeCCe-eeeceeeEEEeecCCeee
Q psy8569           7 VIGSNFRWSVFSVKTRFEVPSETNDVNQ-GLLIEVWDKGI-IWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         7 v~g~~P~W~~~~~~~~~~f~fet~d~~~-gL~vEVWnKgv-iwDdLLG~~~lPL~~v~~   63 (85)
                      -.|-||.|++       +|.|...--+. =|+|+|+|.|. .-||++|-++|||..++.
T Consensus       520 ~n~~nP~Wne-------ef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~  571 (598)
T PLN02230        520 YDTWTPIWNK-------EFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQ  571 (598)
T ss_pred             CCCCCCccCC-------eeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhC
Confidence            3467799999       77776654444 59999999998 678999999999998876

>KOG0169|consensus

Probab=96.68  E-value=0.0013  Score=57.87  Aligned_cols=52  Identities=25%  Similarity=0.217  Sum_probs=44.4

Q ss_pred             eeeecCceeeeeccccceeeEeeeccCCCC-ceEEEEeeCCeee-eceeeEEEeecCCeee
Q psy8569           5 SNVIGSNFRWSVFSVKTRFEVPSETNDVNQ-GLLIEVWDKGIIW-DRAIGYHYLPLPQVAF   63 (85)
Q Consensus         5 ~~v~g~~P~W~~~~~~~~~~f~fet~d~~~-gL~vEVWnKgviw-DdLLG~~~lPL~~v~~   63 (85)
                      |.-.|-+|.|++       +|.|.....+. =|+|+|+|.|.+= ||++|-++||++.+++
T Consensus       664 v~~NgfnP~W~e-------~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~  717 (746)
T KOG0169|consen  664 VKNNGFNPIWDE-------EFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQ  717 (746)
T ss_pred             eccCCcCcccCC-------eEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhC
Confidence            333455699999       99998877777 5899999999999 9999999999998876

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=96.65  E-value=0.0014  Score=46.07  Aligned_cols=46  Identities=26%  Similarity=0.373  Sum_probs=39.4

Q ss_pred             cCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCee
Q psy8569           9 GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVA   62 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~   62 (85)
                      +.||+||+       +|.|.. |-...+.+.||||.--..-=+|-.||+|+.|.
T Consensus        42 srnd~WnE-------~F~i~V-dk~nEiel~VyDk~~~~~~Pi~llW~~~sdi~   87 (109)
T cd08689          42 SRNDRWNE-------DFEIPV-EKNNEEEVIVYDKGGDQPVPVGLLWLRLSDIA   87 (109)
T ss_pred             CCCCcccc-------eEEEEe-cCCcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence            46899999       888888 44668999999998888888999999999874

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02228 Phosphoinositide phospholipase C

Probab=96.50  E-value=0.0032  Score=53.59  Aligned_cols=54  Identities=19%  Similarity=0.156  Sum_probs=40.5

Q ss_pred             eeeeeec-Cceee-eeccccceeeEeeeccCCCC-ceEEEEeeCCe-eeeceeeEEEeecCCeee
Q psy8569           3 KESNVIG-SNFRW-SVFSVKTRFEVPSETNDVNQ-GLLIEVWDKGI-IWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         3 ~~~~v~g-~~P~W-~~~~~~~~~~f~fet~d~~~-gL~vEVWnKgv-iwDdLLG~~~lPL~~v~~   63 (85)
                      ||-.+++ -||.| ++       +|.|.....+. =|+|+|+|.|. .-|+++|.++|||..++.
T Consensus       477 rTk~~~n~~nP~W~~e-------~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~  534 (567)
T PLN02228        477 RTETAVDQWFPIWGND-------EFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKS  534 (567)
T ss_pred             eeeccCCCCCceECCC-------eEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhC
Confidence            4444443 57999 88       66666654444 58999999884 578999999999998875

>KOG1028|consensus

Probab=95.95  E-value=0.016  Score=46.90  Aligned_cols=65  Identities=18%  Similarity=0.044  Sum_probs=49.9

Q ss_pred             ceeeeeecCc-eeeeeccccceeeEeeecc---CCCCceEEEEeeCCe-eeeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           2 RKESNVIGSN-FRWSVFSVKTRFEVPSETN---DVNQGLLIEVWDKGI-IWDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         2 ~~~~~v~g~~-P~W~~~~~~~~~~f~fet~---d~~~gL~vEVWnKgv-iwDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      +||-+.|+.. |.||+       +|.|++.   -.+..|.+.||+-|. -=||++|-+.+||.++.-...  .-.|.-+
T Consensus       204 ~kT~v~r~tlnP~fnE-------tf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~--~~~w~~l  273 (421)
T KOG1028|consen  204 FKTRVHRKTLNPVFNE-------TFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST--TLFWKDL  273 (421)
T ss_pred             ceeeeeecCcCCcccc-------ceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCcccccccc--ceeeecc
Confidence            4677778777 99999       8888853   234479999999998 678999999999999887332  4445544

>KOG2059|consensus

Probab=95.82  E-value=0.0061  Score=54.18  Aligned_cols=61  Identities=16%  Similarity=0.103  Sum_probs=55.0

Q ss_pred             eecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           7 VIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         7 v~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      =|..-|-|.+       ||.|++.+.=..|.|-|||+|+--||.+|...|.=..|+--+  |.+.|..|.
T Consensus        46 ~ksL~PF~gE-------e~~~~iP~~F~~l~fYv~D~d~~~D~~IGKvai~re~l~~~~--~~d~W~~L~  106 (800)
T KOG2059|consen   46 EKSLCPFFGE-------EFYFEIPRTFRYLSFYVWDRDLKRDDIIGKVAIKREDLHMYP--GKDTWFSLQ  106 (800)
T ss_pred             hhhcCCcccc-------ceEEecCcceeeEEEEEeccccccccccceeeeeHHHHhhCC--CCccceecc
Confidence            3667799999       999999999999999999999999999999999988888743  899998875

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=95.14  E-value=0.018  Score=53.25  Aligned_cols=47  Identities=19%  Similarity=0.239  Sum_probs=43.3

Q ss_pred             CceeeeeccccceeeEeeeccCCCCceEEEEee-CCeeeeceeeEEEeecCCeee
Q psy8569          10 SNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWD-KGIIWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus        10 ~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWn-KgviwDdLLG~~~lPL~~v~~   63 (85)
                      .||+||+       +|-.-.|..++-|.++||| .+..=|+++|+..|+|+.+.+
T Consensus       482 ~nPvwNE-------t~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~  529 (1227)
T COG5038         482 LNPVWNE-------TFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQ  529 (1227)
T ss_pred             CCccccc-------eEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhh
Confidence            4799999       7777788999999999999 899999999999999998877

>KOG1328|consensus

Probab=94.88  E-value=0.0091  Score=54.08  Aligned_cols=61  Identities=20%  Similarity=0.311  Sum_probs=51.9

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCC-ceEEEEeeCCe-------------------------------------eeec
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQ-GLLIEVWDKGI-------------------------------------IWDR   49 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~-gL~vEVWnKgv-------------------------------------iwDd   49 (85)
                      +-.||.|++       .|.|++.|++. ++-+.+||-|=                                     -=||
T Consensus       186 ~TLnPkW~E-------kF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD  258 (1103)
T KOG1328|consen  186 KTLNPKWSE-------KFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD  258 (1103)
T ss_pred             ccCCcchhh-------heeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence            446899999       99999999998 89999998652                                     1289


Q ss_pred             eeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569          50 AIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus        50 LLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      +||+.-|||..|.-   .|-++|..|+-.
T Consensus       259 FLGciNipl~EiP~---~Gld~WFkLepR  284 (1103)
T KOG1328|consen  259 FLGCINIPLAEIPP---DGLDQWFKLEPR  284 (1103)
T ss_pred             cccccccchhcCCc---chHHHHhccCcc
Confidence            99999999999986   788899888754

>KOG0696|consensus

Probab=94.88  E-value=0.016  Score=50.42  Aligned_cols=53  Identities=19%  Similarity=0.280  Sum_probs=41.0

Q ss_pred             eeeee-cCceeeeeccccceeeEeeec--cCCCCceEEEEeeCC-eeeeceeeEEEeecCCeee
Q psy8569           4 ESNVI-GSNFRWSVFSVKTRFEVPSET--NDVNQGLLIEVWDKG-IIWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         4 ~~~v~-g~~P~W~~~~~~~~~~f~fet--~d~~~gL~vEVWnKg-viwDdLLG~~~lPL~~v~~   63 (85)
                      |-+|+ ..||.||+       +|.|+.  .|.+.-|.|||||=| +.=+|+||+....++.+..
T Consensus       221 TkTik~~LNP~wNE-------tftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K  277 (683)
T KOG0696|consen  221 TKTIKATLNPVWNE-------TFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQK  277 (683)
T ss_pred             hhhhhhhcCccccc-------eeEEecccccccceeEEEEecccccccccccceecccHHHHhh
Confidence            33444 46899999       555555  788889999999955 3456999999999988887

>KOG1028|consensus

Probab=93.89  E-value=0.063  Score=43.46  Aligned_cols=51  Identities=20%  Similarity=0.192  Sum_probs=39.1

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeecc--CCCC-ceEEEEeeCCeeee-ceeeEEEeecCC
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETN--DVNQ-GLLIEVWDKGIIWD-RAIGYHYLPLPQ   60 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~--d~~~-gL~vEVWnKgviwD-dLLG~~~lPL~~   60 (85)
                      ||...+ ..||.||+       .|.|++.  .+.. .|.++|||.+-+=- +++|.|+|...+
T Consensus       338 kT~~~~~~~npv~ne-------sf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  338 KTSVKKKTLNPVFNE-------TFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             eeecccCCCCCcccc-------cEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence            444443 45699999       8888764  4544 79999999987754 799999998887

>PLN02270 phospholipase D alpha

Probab=93.54  E-value=0.14  Score=45.77  Aligned_cols=65  Identities=15%  Similarity=0.230  Sum_probs=53.2

Q ss_pred             eeeeeec--CceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNVIG--SNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v~g--~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      +|-+|..  .||.|+|       .|..-....-+.+.|.|=|++++=..|||..+||...|--  ++.-..|.-+-
T Consensus        62 rtr~~~~~~~~p~w~e-------~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~--g~~i~~~~~~~  128 (808)
T PLN02270         62 RTRKIENEPKNPRWYE-------SFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILD--GEEVDRWVEIL  128 (808)
T ss_pred             EEeecCCCCCCCcccc-------ceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcC--CCccccEEecc
Confidence            4555655  3899999       8888888888999999999999999999999999998866  44456666543

>KOG1264|consensus

Probab=93.41  E-value=0.077  Score=48.86  Aligned_cols=55  Identities=16%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             ceeeeeecCceeee-eccccceeeEeeeccCCCC-ceEEEEeeCCeeee-ceeeEEEeecCCeee
Q psy8569           2 RKESNVIGSNFRWS-VFSVKTRFEVPSETNDVNQ-GLLIEVWDKGIIWD-RAIGYHYLPLPQVAF   63 (85)
Q Consensus         2 ~~~~~v~g~~P~W~-~~~~~~~~~f~fet~d~~~-gL~vEVWnKgviwD-dLLG~~~lPL~~v~~   63 (85)
                      ++.|+=-|.||.|+ +       .|.||+-+-+. =|+|+|.+.|+.=| .+||-..-|+..|++
T Consensus      1105 t~~V~dNGlnPiWn~e-------~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1105 TTVVNDNGLNPIWNPE-------KFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred             EEEeccCCCCCCCCCc-------ceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhc
Confidence            34566678999999 8       89999987777 59999999999999 899999999999987

>KOG2059|consensus

Probab=91.20  E-value=0.2  Score=44.95  Aligned_cols=63  Identities=11%  Similarity=0.101  Sum_probs=50.4

Q ss_pred             eeeecCceeeeeccccceeeEeeeccCC----------------CCceEEEEee--CCeeeeceeeEEEeecCCeeeecC
Q psy8569           5 SNVIGSNFRWSVFSVKTRFEVPSETNDV----------------NQGLLIEVWD--KGIIWDRAIGYHYLPLPQVAFSNE   66 (85)
Q Consensus         5 ~~v~g~~P~W~~~~~~~~~~f~fet~d~----------------~~gL~vEVWn--KgviwDdLLG~~~lPL~~v~~s~e   66 (85)
                      +..++.+|.|++       .|.|+.-.-                ..-|+|++||  ..++-|+.+|-.-+|+....+  .
T Consensus       172 ~~kkt~~p~~~E-------v~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~--~  242 (800)
T KOG2059|consen  172 VKKKTTNPQFDE-------VFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ--K  242 (800)
T ss_pred             eeeeccCcchhh-------heeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh--c
Confidence            556889999999       777776443                4479999999  445569999999999998886  6


Q ss_pred             cCCCceeEee
Q psy8569          67 VGSRKTAGVK   76 (85)
Q Consensus        67 ~g~g~W~~l~   76 (85)
                      .++..|.-|.
T Consensus       243 s~p~~W~~Lq  252 (800)
T KOG2059|consen  243 SSPAAWYYLQ  252 (800)
T ss_pred             cCccceEEEe
Confidence            7788888764

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=91.16  E-value=0.15  Score=47.45  Aligned_cols=72  Identities=24%  Similarity=0.136  Sum_probs=50.7

Q ss_pred             eeeeeecCceeeeeccccceeeEeeecc-CCCCceEEEEeeCCeee-eceeeEEEeecCCeee-----ecCcCCCcee-E
Q psy8569           3 KESNVIGSNFRWSVFSVKTRFEVPSETN-DVNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAF-----SNEVGSRKTA-G   74 (85)
Q Consensus         3 ~~~~v~g~~P~W~~~~~~~~~~f~fet~-d~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~-----s~e~g~g~W~-~   74 (85)
                      +.+.-|+.||.||+       ++.-|+. +.+.-|.+-|-|=+.-= ||+||+|-+||.++.+     ++-.-.|+|. .
T Consensus      1077 tkv~KktlNPvwNE-------e~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~ 1149 (1227)
T COG5038        1077 TKVVKKTLNPVWNE-------EFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIV 1149 (1227)
T ss_pred             ccchhccCCCCccc-------cceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCcceEe
Confidence            34566899999999       9999994 77777777775544433 4999999999999876     2233456663 3


Q ss_pred             eeccccc
Q psy8569          75 VKGLFSP   81 (85)
Q Consensus        75 l~~~~~~   81 (85)
                      +.|.|.|
T Consensus      1150 ~~g~~~~ 1156 (1227)
T COG5038        1150 LDGTLHP 1156 (1227)
T ss_pred             cccEeec
Confidence            3444444

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=88.48  E-value=2.5  Score=30.00  Aligned_cols=65  Identities=15%  Similarity=0.258  Sum_probs=47.0

Q ss_pred             eeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcC--CCceeEee
Q psy8569          12 FRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG--SRKTAGVK   76 (85)
Q Consensus        12 P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g--~g~W~~l~   76 (85)
                      +-|+.|.+.-.-.|.+.+...-.-|.+|||.++.+-|.+|...+|||.+-+......  +-+|+.+.
T Consensus        57 ~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~~~~~~~~~~~~eFs  123 (168)
T PF15625_consen   57 PLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGSTVHTSTDNVPLEEYEFS  123 (168)
T ss_pred             ecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCcccccccCCceEeEEEc
Confidence            345555555555666667777778999999999999999999999998877643222  44555443

>KOG1011|consensus

Probab=87.80  E-value=0.38  Score=44.01  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=47.2

Q ss_pred             cCceeeeeccccceeeEeeeccCCCCceEEEEeeCCe------------eeeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           9 GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGI------------IWDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgv------------iwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ..||.||+       .|-||--+-..-+.|.|||+|-            --||+||--.|-+.+++-  |  -+-|++|+
T Consensus       337 ~lnpvw~e-------kfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtlsg--e--mdvwynle  405 (1283)
T KOG1011|consen  337 ELNPVWNE-------KFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSG--E--MDVWYNLE  405 (1283)
T ss_pred             ccchhhhh-------heeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEeccc--c--hhhhcchh
Confidence            46899999       9999997766779999999874            358999999998877654  2  35788888


Q ss_pred             cc
Q psy8569          77 GL   78 (85)
Q Consensus        77 ~~   78 (85)
                      +.
T Consensus       406 kr  407 (1283)
T KOG1011|consen  406 KR  407 (1283)
T ss_pred             hc
Confidence            64

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=86.88  E-value=2.1  Score=30.26  Aligned_cols=49  Identities=20%  Similarity=0.311  Sum_probs=36.5

Q ss_pred             eeeecCceeeeeccccceeeEeeecc-CC--CCceEEEEeeCCeee------eceeeEEEeecCC
Q psy8569           5 SNVIGSNFRWSVFSVKTRFEVPSETN-DV--NQGLLIEVWDKGIIW------DRAIGYHYLPLPQ   60 (85)
Q Consensus         5 ~~v~g~~P~W~~~~~~~~~~f~fet~-d~--~~gL~vEVWnKgviw------DdLLG~~~lPL~~   60 (85)
                      +..-..+|.|++       +|..... +.  +.-|.|++.+-..-=      ...+|++|+||-.
T Consensus        58 v~~~~k~p~f~d-------eiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          58 VVYYHKNPVFND-------EIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEcCCCCCCce-------eEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            444446899999       8888873 22  447999998865443      4789999999985

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=83.09  E-value=3.2  Score=29.26  Aligned_cols=45  Identities=22%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             cCceeeeeccccceeeEeeecc-CC--CCceEEEEeeCCeee----eceeeEEEeecCC
Q psy8569           9 GSNFRWSVFSVKTRFEVPSETN-DV--NQGLLIEVWDKGIIW----DRAIGYHYLPLPQ   60 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet~-d~--~~gL~vEVWnKgviw----DdLLG~~~lPL~~   60 (85)
                      .++|.|++       +|..+.. ++  +..|.|++..-..-=    +..+|++||||..
T Consensus        69 ~k~P~f~d-------eiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   69 NKNPQFND-------EIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -SS-EEEE-------EEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             CCCCCccE-------EEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            47899999       9888873 22  337999999876642    1699999999986

>KOG1031|consensus

Probab=81.95  E-value=1  Score=41.02  Aligned_cols=56  Identities=18%  Similarity=0.208  Sum_probs=45.8

Q ss_pred             eeeeecCceeeeeccccceeeEeeeccCCCC---ceEEEEeeCCeeee-ceeeEEEeecCCeeeec
Q psy8569           4 ESNVIGSNFRWSVFSVKTRFEVPSETNDVNQ---GLLIEVWDKGIIWD-RAIGYHYLPLPQVAFSN   65 (85)
Q Consensus         4 ~~~v~g~~P~W~~~~~~~~~~f~fet~d~~~---gL~vEVWnKgviwD-dLLG~~~lPL~~v~~s~   65 (85)
                      .|-.|+.||.||.      =-|.||..|.+.   -|++.|-|-|.|-- |.+|..+|.+.-+.++.
T Consensus        41 dvf~kslnp~wns------dwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~  100 (1169)
T KOG1031|consen   41 DVFLKSLNPQWNS------DWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEE  100 (1169)
T ss_pred             hhhhhhcCCcccc------cceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHh
Confidence            3557899999997      137888877655   49999999998864 99999999999988855

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	85
2cjt_A	131	Structural Basis For A Munc13-1 Dimeric - Munc13-1		2e-05
2cjs_A	167	Structural Basis For A Munc13-1 Dimeric - Munc13-1		2e-05

>pdb|2CJT|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim Heterodimer Switch: C2-Domains As Versatile Protein- Protein Interaction Modules Length = 131

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
          E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct: 55 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 95

>pdb|2CJS|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim Heterodimer Switch: C2-domains As Versatile Protein- Protein Interaction Modules Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 28  ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVG 68
           E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G
Sbjct: 64  EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	85
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-10

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 58.1 bits (140), Expect = 2e-12
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query: 28  ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRK 71
           E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G  +
Sbjct: 64  EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGE 107

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 51.9 bits (124), Expect = 2e-10
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 28 ETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGS 69
          E N ++ GL +EVW+KG+IWD  +G  ++PL  +  SNE G 
Sbjct: 55 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGP 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	85
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.42
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.38
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.11
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.06
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.03
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.02
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.01
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.01
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	98.99
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	98.97
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	98.96
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	98.94
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	98.94
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	98.94
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	98.93
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	98.92
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	98.92
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	98.9
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	98.89
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	98.89
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	98.88
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	98.87
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	98.84
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	98.84
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	98.81
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	98.81
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	98.78
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	98.77
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	98.75
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	98.71
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	98.71
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	98.71
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	98.69
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	98.66
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	98.59
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	98.55
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	98.39
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	98.35
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	98.33
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	98.21
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	98.19
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	98.06
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	97.96
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	97.93
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	97.92
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	97.8
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	97.63
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	97.54
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	96.66
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	89.75
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	89.45

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.42  E-value=4.3e-13  Score=88.34  Aligned_cols=62  Identities=35%  Similarity=0.686  Sum_probs=54.1

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ++.||.||+       +|.|+..+.+..|.|+|||+|+..||+||.+.|||++|..+...+..+|..+.
T Consensus        42 ~t~nP~WnE-------~f~f~v~~~~~~L~~~V~D~d~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~  103 (131)
T 2cjt_A           42 RGSQPSWEQ-------DFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD  103 (131)
T ss_dssp             ESSSCEEEE-------EEEEEECCCSSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECB
T ss_pred             CCCCceECC-------EEEEEEeCCCCeEEEEEEECCCCCCCeEEEEEEEHHHhhhcCCCCccccEEcc
Confidence            589999999       99999988878899999999988999999999999999887666666776543

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.38  E-value=1e-12  Score=90.66  Aligned_cols=61  Identities=36%  Similarity=0.695  Sum_probs=54.5

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ++.||.||+       +|.|...+....|.|+|||+|+..||+||.+.|||++|..+.+.+..+|..+
T Consensus        51 ~t~nP~WnE-------~f~f~v~~~~~~L~~~V~D~d~~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~  111 (167)
T 2cjs_A           51 RGSQPSWEQ-------DFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTL  111 (167)
T ss_dssp             ESSSCEEEE-------EEEEECCCTTSEEEEEEEECCSSCCEEEEEEEEEGGGSCBCSSCCCCEEEEE
T ss_pred             CCCCCCCCC-------EEEEEeeCCCCEEEEEEEECCCCCCceEEEEEEEHHHhcccCcCCcccceee
Confidence            589999999       9999999888899999999998899999999999999988776677677654

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.11  E-value=8.7e-11  Score=73.73  Aligned_cols=66  Identities=11%  Similarity=0.107  Sum_probs=52.8

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeecc-CCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETN-DVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~-d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||-.++ +.||.||+       +|.|... ....-|.|+|||++..-|++||.+.+||+.+..  +.....|..|++
T Consensus        44 kT~v~~~t~nP~wne-------~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~--~~~~~~~~~L~~  111 (126)
T 1rlw_A           44 RTRHFNNDINPVWNE-------TFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKV--GEKKEVPFIFNQ  111 (126)
T ss_dssp             ECCCCTTCSSCEEEE-------EEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCT--TCEEEEEEEETT
T ss_pred             EccccCCCCCCcccc-------eEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccC--CCcEEEEEEcCC
Confidence            344444 56899999       8888873 445689999999999889999999999999974  566678888864

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.06  E-value=2e-10  Score=72.38  Aligned_cols=59  Identities=12%  Similarity=0.200  Sum_probs=44.8

Q ss_pred             ecCceeeeeccccceeeEeeecc---C-CCCceEEEEeeCCeee---eceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETN---D-VNQGLLIEVWDKGIIW---DRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~---d-~~~gL~vEVWnKgviw---DdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ++.||.||+       +|.|...   + .+..|.|+|||++.+-   |++||.+.+||.++..+   +..+|+.|+
T Consensus        64 ~t~nP~wne-------~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~---~~~~W~~Lq  129 (129)
T 2bwq_A           64 KTLEPKWNQ-------TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD---DEPHWYKLQ  129 (129)
T ss_dssp             SBSSCEEEE-------EEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCS---SCEEEEECC
T ss_pred             CCCCCcccc-------EEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCC---cCCccEECc
Confidence            456899999       8888853   2 2458999999999987   99999999999998763   277898874

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=4.2e-10  Score=71.93  Aligned_cols=63  Identities=19%  Similarity=0.139  Sum_probs=50.0

Q ss_pred             eeeeeecC-ceeeeeccccceeeEeeeccC----CCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeE
Q psy8569           3 KESNVIGS-NFRWSVFSVKTRFEVPSETND----VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAG   74 (85)
Q Consensus         3 ~~~~v~g~-~P~W~~~~~~~~~~f~fet~d----~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~   74 (85)
                      ||-+++++ ||.||+       +|.|...+    ...-|.|+|||++.+ -|++||.+.|||..+..  +.....|..
T Consensus        41 kT~v~~~t~nP~wne-------~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~--~~~~~~w~~  109 (140)
T 2dmh_A           41 KTKKVDNELNPVWNE-------ILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTG--DQSRSLPYK  109 (140)
T ss_dssp             ECCCCCSCSSCEEEE-------EEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCS--SSCEEEEEE
T ss_pred             EeeeecCCCCCccCc-------EEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhcc--CCCceeEEe
Confidence            45556665 899999       88887743    356899999999988 57899999999999865  445567877

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.02  E-value=1.2e-10  Score=74.11  Aligned_cols=66  Identities=20%  Similarity=0.227  Sum_probs=53.3

Q ss_pred             eeeeee--cCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNVI--GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v~--g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ||-.++  +.||.|++       +|.|...+...-|.|+|||++.+- |++||.+.|||..+... .....+|+.|.
T Consensus        45 kT~~~~~~~~nP~Wne-------~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~  113 (136)
T 1wfj_A           45 KSNVAEGMGTTPEWNE-------TFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVE-GSIPPTAYNVV  113 (136)
T ss_dssp             ECCCCTTCCSSCEEEE-------EEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHH-SEEEEEEEEEE
T ss_pred             eeEeccCCCCCCccCc-------EEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccC-CCCCcEEEEee
Confidence            444554  78999999       888888887778999999999874 89999999999999432 34456888875

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.01  E-value=8e-10  Score=71.76  Aligned_cols=64  Identities=22%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             eecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCc----CCCceeEeec
Q psy8569           7 VIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEV----GSRKTAGVKG   77 (85)
Q Consensus         7 v~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~----g~g~W~~l~~   77 (85)
                      -++.||.||+       +|.|...+.+.-|.|+|||++.+ -|++||.+.|||..+......    -..+|+.|+.
T Consensus        66 ~~t~nP~wne-------~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~  134 (153)
T 3b7y_A           66 KKSLNPKWNE-------EILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP  134 (153)
T ss_dssp             SSCSSCCCCE-------EEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBC
T ss_pred             cCCCCCCCCC-------EEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccc
Confidence            3456899999       88888877777899999999987 589999999999999875432    1248998864

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.01  E-value=4.8e-10  Score=72.47  Aligned_cols=64  Identities=11%  Similarity=0.123  Sum_probs=52.4

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee------------eeceeeEEEeecCCeeeecCcCC
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII------------WDRAIGYHYLPLPQVAFSNEVGS   69 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi------------wDdLLG~~~lPL~~v~~s~e~g~   69 (85)
                      ||-.++ +.||.|++       +|.|+..+..+-|.|+|||++..            -|++||.+.+||+.+.    .+.
T Consensus        52 kT~~~~~t~nP~Wne-------~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~----~~~  120 (148)
T 3kwu_A           52 RTKTIYGNLNPVWEE-------NFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS----GEM  120 (148)
T ss_dssp             ECCCCCSCSSCEEEE-------EEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC----SEE
T ss_pred             ECCccCCCCCCCccc-------EEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc----CCC
Confidence            344444 56899999       88998877778899999999985            7999999999999993    345


Q ss_pred             CceeEeec
Q psy8569          70 RKTAGVKG   77 (85)
Q Consensus        70 g~W~~l~~   77 (85)
                      .+|..|+.
T Consensus       121 ~~w~~L~~  128 (148)
T 3kwu_A          121 DVWYNLDK  128 (148)
T ss_dssp             EEEEECBC
T ss_pred             CEEEEccc
Confidence            68999873

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=98.99  E-value=1.6e-10  Score=74.53  Aligned_cols=63  Identities=8%  Similarity=0.078  Sum_probs=49.4

Q ss_pred             eecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           7 VIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         7 v~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      -++.||.||+       +|.|+..+- +-|.|+|||++.+- ||+||.|.|||+++..........|..|+.
T Consensus        58 ~~t~nP~WnE-------~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~  121 (136)
T 1gmi_A           58 QKTNSPAWHD-------EFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP  121 (136)
T ss_dssp             SSCSSCEEEE-------EEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS
T ss_pred             CCCcCCccCC-------EEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC
Confidence            3567999999       888877554 78999999999765 899999999999987643222367988763

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=98.97  E-value=1.3e-09  Score=73.09  Aligned_cols=63  Identities=22%  Similarity=0.262  Sum_probs=48.1

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCC----ceeEeec
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSR----KTAGVKG   77 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g----~W~~l~~   77 (85)
                      ++.||.|++       .|.|...+...-|.|+|||++.+ -|++||.+.|||..+.........    +|+.|+.
T Consensus        55 ~t~nP~Wne-------~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~  122 (176)
T 3m7f_B           55 KSLNPKWNE-------EILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP  122 (176)
T ss_dssp             SCSSCEEEE-------EEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBC
T ss_pred             CCCCCcccc-------eEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccc
Confidence            477899999       88998887777899999999877 689999999999999874433222    7988874

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=98.96  E-value=3.8e-10  Score=72.04  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=50.5

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ++.||.|++       +|.|...+...-|.|+|||++.. -|++||.+.+||..+..    +..+|..|+.
T Consensus        54 ~t~nP~wne-------~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~----~~~~w~~L~~  113 (133)
T 2ep6_A           54 KNLNPEWNK-------VFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD----GQPNCYVLKN  113 (133)
T ss_dssp             SCSSCCCCE-------EEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCS----SCCEECCCBC
T ss_pred             CCCCCcccc-------EEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccC----CCceEEEeec
Confidence            456899999       89999888888899999999988 58999999999999854    4458988864

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=98.94  E-value=3.9e-10  Score=71.91  Aligned_cols=62  Identities=15%  Similarity=0.223  Sum_probs=48.5

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeee----eceeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIW----DRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviw----DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      ++.||.||+       +|.|...+... |.|+|||++.+-    |++||.+.|||..|....+.+ -+|..|.+.
T Consensus        48 ~t~nP~wne-------~f~f~v~~~~~-l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~~L~~~  113 (132)
T 3pyc_A           48 NTLDPKWNQ-------HYDLYVGKTDS-ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG-YQRLDLCKL  113 (132)
T ss_dssp             SCSSCEEEE-------EEEEEEETTCC-EEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSC-CEEEECBCS
T ss_pred             CCCCCCccC-------EEEEEeCCCCE-EEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccC-cEEEeeeec
Confidence            456899999       77777766544 999999999986    899999999999985544433 377777653

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=98.94  E-value=7.3e-10  Score=74.63  Aligned_cols=69  Identities=13%  Similarity=0.045  Sum_probs=55.3

Q ss_pred             eeeeeec-CceeeeeccccceeeEeeeccCCCCceEEEEe-eCCee-eeceeeEEEeecCCeeeecCcCCCceeEeeccc
Q psy8569           3 KESNVIG-SNFRWSVFSVKTRFEVPSETNDVNQGLLIEVW-DKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGLF   79 (85)
Q Consensus         3 ~~~~v~g-~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVW-nKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~~   79 (85)
                      ||-++++ .||.||+       +|.|.....+.-|.|+|| |.+.+ -|++||.+.|||..+..  +....+|..|+.--
T Consensus        71 kT~v~~~t~nP~wne-------~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~--~~~~~~W~~L~~~~  141 (171)
T 2q3x_A           71 KTRIARKTLDPLYQQ-------SLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL--SSMVIGWYKLFPPS  141 (171)
T ss_dssp             ECCCCCSCSSCEEEE-------EEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCT--TSCEEEEEECBCGG
T ss_pred             eCccCCCCCCCCCCc-------EEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHccc--CCCcceeEECCCcc
Confidence            3444444 5899999       999988766678999999 98887 47999999999999986  44567899988654


Q ss_pred             c
Q psy8569          80 S   80 (85)
Q Consensus        80 ~   80 (85)
                      +
T Consensus       142 ~  142 (171)
T 2q3x_A          142 S  142 (171)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=98.94  E-value=8.2e-10  Score=70.21  Aligned_cols=62  Identities=11%  Similarity=0.153  Sum_probs=49.8

Q ss_pred             eecCceeeeeccccceeeEeeeccC----CCCceEEEEeeCCeee---eceeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569           7 VIGSNFRWSVFSVKTRFEVPSETND----VNQGLLIEVWDKGIIW---DRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus         7 v~g~~P~W~~~~~~~~~~f~fet~d----~~~gL~vEVWnKgviw---DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      -++.||.||+       +|.|....    .+.-|.|+|||++.+-   |++||.+.|||..+..+   +..+|+.|...
T Consensus        66 ~~t~nP~wne-------~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~---~~~~W~~L~~~  134 (141)
T 1v27_A           66 KKTLEPKWNQ-------TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD---DEPHWYKLQTH  134 (141)
T ss_dssp             SSCSSCCCCC-------CCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCS---SEEEEEECBCC
T ss_pred             cCCCCCcccc-------EEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCC---CCCceEECccc
Confidence            3456899999       88888432    2358999999999987   99999999999998652   26789998764

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.93  E-value=7.8e-10  Score=70.82  Aligned_cols=61  Identities=16%  Similarity=0.225  Sum_probs=49.4

Q ss_pred             ecCceeeeeccccceeeEeee-c--cC-CCCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSE-T--ND-VNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fe-t--~d-~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ++.||.||+       +|.|. .  .+ .+.-|.|+|||++.+- |++||.+.|||.++..  ......|+.|+.
T Consensus        73 ~t~nP~wne-------~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~--~~~~~~W~~L~~  138 (142)
T 1rh8_A           73 KSLNPEWNQ-------TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH--LDNTPRWYPLKE  138 (142)
T ss_dssp             HHHSCEEEE-------EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG--GTTCCEEEECBC
T ss_pred             CCCCCCCCC-------EEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEecccccc--CCCCCeEEECCc
Confidence            456899999       88876 2  23 3458999999999874 8999999999999976  445679999875

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=98.92  E-value=6.5e-10  Score=71.48  Aligned_cols=65  Identities=14%  Similarity=0.165  Sum_probs=51.0

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeecc--CC-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETN--DV-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~--d~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ||-.++ +.||.|++       +|.|...  ++ +.-|.|+|||++.+ -|++||.+.+||..+..  +....+|..|+
T Consensus        72 kT~v~~~t~nP~wne-------~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~--~~~~~~W~~L~  141 (143)
T 3f04_A           72 ETKVHRKTLNPVFNE-------QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF--GHVTEEWRDLQ  141 (143)
T ss_dssp             ECCCCCSCSSCEEEE-------EEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCT--TSCEEEEEECB
T ss_pred             ECccCcCCCCCcCcC-------eEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccC--CCCcceEEECc
Confidence            344444 56899999       8888764  32 35799999999987 68999999999999976  55667898875

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=98.92  E-value=1.3e-09  Score=70.70  Aligned_cols=66  Identities=14%  Similarity=0.062  Sum_probs=51.3

Q ss_pred             eeeee-ecCceeeeeccccceeeEeee-cc--C-CCCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSE-TN--D-VNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fe-t~--d-~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ||-++ ++.||.||+       +|.|. +.  + .+.-|.|+|||++.+- |++||.+.|||..+..  +.....|..|+
T Consensus        59 kT~v~~~t~nP~wnE-------~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~--~~~~~~W~~L~  129 (134)
T 2b3r_A           59 KTKISRKTRNPTFNE-------MLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNL--SKETVKWYQLT  129 (134)
T ss_dssp             ECCCCCSCSSCEEEE-------EEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCT--TSCEEEEEECB
T ss_pred             cCCcCcCCCCCCCcc-------EEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccC--CCCcceeEECC
Confidence            44444 456899999       88887 43  3 3458999999999875 7999999999999976  44557899887


Q ss_pred             c
Q psy8569          77 G   77 (85)
Q Consensus        77 ~   77 (85)
                      +
T Consensus       130 ~  130 (134)
T 2b3r_A          130 A  130 (134)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.90  E-value=1.6e-09  Score=70.86  Aligned_cols=66  Identities=14%  Similarity=0.138  Sum_probs=51.2

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccC--C-CCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETND--V-NQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d--~-~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||-.++ +.||.||+       +|.|....  + +.-|.|+|||++.+- |++||.+.|||..+..  +..-.+|..|+.
T Consensus        80 kT~v~~~t~nP~wne-------~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~--~~~~~~W~~L~~  150 (152)
T 1rsy_A           80 ETKVHRKTLNPVFNE-------QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF--GHVTEEWRDLQS  150 (152)
T ss_dssp             ECCCCTTCSSCEEEE-------EEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCC--SSCEEEEEECBC
T ss_pred             eccccCCCCCCcCcc-------cEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccC--CCCcceEEECCC
Confidence            344444 45899999       88887643  2 568999999999874 8999999999999976  445578988764

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=98.89  E-value=2.5e-09  Score=69.40  Aligned_cols=66  Identities=11%  Similarity=0.092  Sum_probs=51.1

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccC--C-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETND--V-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d--~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||-++ ++.||.||+       +|.|.+..  + +.-|.|+|||.+.+ -||+||.+.|||.++..  +....+|..|+.
T Consensus        62 kT~v~~~tlnP~wnE-------~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~--~~~~~~W~~L~~  132 (138)
T 1wfm_A           62 QTALKKRQLHTTWEE-------GLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV--PLGAAQWGELKT  132 (138)
T ss_dssp             ECCCCCCCSSEECSS-------CEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSS--CTTCCEEEECCC
T ss_pred             ecccCcCCCCCcCCc-------eEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccC--cccccceeeCcC
Confidence            33333 456899999       77777643  2 34799999999976 57999999999999975  456788998875

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=1.9e-09  Score=69.33  Aligned_cols=62  Identities=21%  Similarity=0.169  Sum_probs=50.1

Q ss_pred             ecCceeeeeccccceeeEeeeccC----CCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETND----VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d----~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      ++.||.||+       +|.|+...    ...-|.|+|||++.+ -|++||.+.|||..+..  +.....|+.|+..
T Consensus        70 ~t~nP~wne-------~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~--~~~~~~W~~L~~~  136 (141)
T 2d8k_A           70 KNLNPHWNE-------TFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL--TQMQTFWKDLKPS  136 (141)
T ss_dssp             TCSSCCCCE-------EEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCT--TSCEEEEECCEEC
T ss_pred             CCCCCcccc-------EEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcC--CCCccEEEECcCC
Confidence            456899999       88887522    245799999999987 48999999999999977  4466789988753

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=98.88  E-value=8.8e-10  Score=71.67  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=51.7

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCCC---CceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDVN---QGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~~---~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||..++ ..||.||+       +|.|.....+   .-|.|+|||.+.+- |++||.+.|||+++...  ....+|+.|.+
T Consensus        64 kT~v~~~t~nP~wne-------~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~--~~~~~W~~L~~  134 (148)
T 3fdw_A           64 KTSIKRDTVNPLYDE-------TLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLD--KKLDHCLPLHG  134 (148)
T ss_dssp             ECCCCSSCSSCEEEE-------EEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHH--CCSEEEEECBC
T ss_pred             ccccCCCCCCCcEee-------EEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEccccccc--CCccceEECcC
Confidence            444455 56899999       8888765432   35999999999875 89999999999999773  35568999875

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.87  E-value=1.1e-09  Score=71.32  Aligned_cols=60  Identities=13%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             ecCceeeeeccccceeeEeeeccC--CCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETND--VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d--~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ++.||.|++       +|.|...+  .+.-|.|+|||++.+ -|++||.+.|||..+..+   ...+|+.|..
T Consensus        77 ~t~nP~wne-------~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~---~~~~W~~L~~  139 (149)
T 1a25_A           77 CSLNPEWNE-------TFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA---GVDGWFKLLS  139 (149)
T ss_dssp             SCSSCEEEE-------EEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC---CEEEEEECBC
T ss_pred             CCCCCcCCc-------EEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC---ccCCeEEccC
Confidence            356899999       77777754  456799999999988 589999999999998763   3568988863

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=2.2e-09  Score=68.97  Aligned_cols=70  Identities=14%  Similarity=0.058  Sum_probs=52.5

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccC--C-CCceEEEEeeCCeee---eceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETND--V-NQGLLIEVWDKGIIW---DRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d--~-~~gL~vEVWnKgviw---DdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ||-++ ++.||.||+       +|.|.+..  + +.-|.|+|||++.+-   |++||.+.|||..+..+  ....+|..|
T Consensus        63 kT~v~~~t~nP~wne-------~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~--~~~~~W~~L  133 (142)
T 2dmg_A           63 KTHVSKKTLNPVFDQ-------SFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELA--KGWTQWYDL  133 (142)
T ss_dssp             ECCCCCSCSSCEEEE-------EEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTT--TCBCCBCCC
T ss_pred             cCCccCCCCCCCcCc-------eEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEeccccccc--ccccceeec
Confidence            34444 456899999       88887633  2 247999999999875   57999999999998773  367789988


Q ss_pred             eccccc
Q psy8569          76 KGLFSP   81 (85)
Q Consensus        76 ~~~~~~   81 (85)
                      ..--.|
T Consensus       134 ~~~~~~  139 (142)
T 2dmg_A          134 TEDSGP  139 (142)
T ss_dssp             BCSCSC
T ss_pred             cCCCCC
Confidence            765333

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=98.84  E-value=2e-09  Score=70.78  Aligned_cols=67  Identities=15%  Similarity=0.121  Sum_probs=51.0

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeec--cCCCCceEEEEeeCCeee--eceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSET--NDVNQGLLIEVWDKGIIW--DRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet--~d~~~gL~vEVWnKgviw--DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||.++ ++.||.||+       +|.|..  .+...-|.|+|||++.+-  |++||.+.+||..+.... .....|..|..
T Consensus        66 kT~v~~~t~nP~wne-------~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~-~~~~~W~~L~~  137 (153)
T 3fbk_A           66 KTQTVPDCRDPAFHE-------HFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD-KEISGWYYLLG  137 (153)
T ss_dssp             ECCCCTTCSSCEEEE-------EEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC---CCEEEEEECBC
T ss_pred             eccccCCCCCCcccc-------EEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCC-CccccEEECCC
Confidence            34444 466899999       777777  677667999999999873  899999999999996532 34457988864

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=98.81  E-value=1.3e-09  Score=75.33  Aligned_cols=62  Identities=10%  Similarity=0.055  Sum_probs=50.4

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeee-eceeeEEEeecCCeeee--cCcCCCceeEeec
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFS--NEVGSRKTAGVKG   77 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s--~e~g~g~W~~l~~   77 (85)
                      +..||.|||       +|.|+..+ .+-|.|+|||++.+- ||+||.+.|||..|...  .......|+.|+.
T Consensus        81 ktlnP~WNE-------~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~  145 (157)
T 2fk9_A           81 KTNKPTYNE-------EFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP  145 (157)
T ss_dssp             SCSSCEEEE-------EEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS
T ss_pred             CCCCCccCc-------EEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC
Confidence            467899999       88888754 457999999999775 89999999999998864  2245678998864

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.7e-09  Score=69.06  Aligned_cols=67  Identities=16%  Similarity=0.053  Sum_probs=50.7

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccC--C-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETND--V-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d--~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||-++ ++.||.||+       +|.|....  + ..-|.|+|||++.+ -|++||.+.|||..+..  ......|..|+.
T Consensus        71 kT~v~~~t~nP~wne-------~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~--~~~~~~w~~L~~  141 (147)
T 2enp_A           71 QTGVKRKTQKPVFEE-------RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL--VKGGHWWKALIP  141 (147)
T ss_dssp             ECCCCCSCSSCCCCB-------CCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCT--TTCCCEEECCBC
T ss_pred             EeecccCCCCCeEee-------eEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCC--CCCccEEEEeec
Confidence            34344 456899999       78887643  2 24799999999976 47899999999999976  344578888875


Q ss_pred             c
Q psy8569          78 L   78 (85)
Q Consensus        78 ~   78 (85)
                      -
T Consensus       142 ~  142 (147)
T 2enp_A          142 S  142 (147)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=98.77  E-value=7.9e-09  Score=66.24  Aligned_cols=63  Identities=11%  Similarity=0.043  Sum_probs=46.6

Q ss_pred             ecCceeeeeccccceeeEeee-ccC--C-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeecc
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSE-TND--V-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKGL   78 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fe-t~d--~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~~   78 (85)
                      ++.||.||+       +|.|. ...  + +.-|.|+|||++.+ -|++||.+.|||..+..+.+. ...|..|+.-
T Consensus        67 ~t~nP~wne-------~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~-~~~~~~l~~~  134 (138)
T 1ugk_A           67 KTLDPAFDE-------TFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK-MLMNREIISG  134 (138)
T ss_dssp             SCSSCEEEE-------EEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCC-EEEEEECBSS
T ss_pred             CCCCCcEee-------EEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCc-chhhhhhhcC
Confidence            456899999       88884 432  2 34799999999987 579999999999999874322 1345777653

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=98.75  E-value=4.6e-09  Score=67.44  Aligned_cols=60  Identities=17%  Similarity=0.200  Sum_probs=46.5

Q ss_pred             ecCceeeeeccccceeeEeee-c--cCC-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSE-T--NDV-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fe-t--~d~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ++.||.|++       +|.|. .  .++ ..-|.|+|||++.+ -|++||.+.+||+.+..  +.....|..|+
T Consensus        75 ~t~nP~wne-------~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~--~~~~~~~~~L~  139 (142)
T 2chd_A           75 NTRNPVWNE-------TLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA--NQRKNFNICLE  139 (142)
T ss_dssp             SCSSCEEEE-------EEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCT--TCCEEEEEECB
T ss_pred             CCCCCcCcC-------EEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCC--CCccEEEEecc
Confidence            466899999       77776 3  233 25799999999987 47999999999999876  44566666665

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=98.71  E-value=7.7e-09  Score=71.03  Aligned_cols=63  Identities=17%  Similarity=0.167  Sum_probs=48.5

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecC-cCC--CceeEeecc
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNE-VGS--RKTAGVKGL   78 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e-~g~--g~W~~l~~~   78 (85)
                      ++.||.||+       +|.|.... .+-|.|+|||++.+ -||+||.+.+||..+..... ...  ..|..|+.-
T Consensus        77 ~tlnP~Wne-------~f~f~v~~-~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~  143 (173)
T 2nq3_A           77 NTNSPKWKQ-------PLTVIVTP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD  143 (173)
T ss_dssp             SCSSCEEEE-------EEEEEECT-TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES
T ss_pred             CCCCCeECC-------EEEEEeCC-CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC
Confidence            456899999       88887654 77899999999987 68999999999999865321 111  458887753

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=98.71  E-value=1.1e-08  Score=67.06  Aligned_cols=63  Identities=13%  Similarity=0.012  Sum_probs=46.9

Q ss_pred             ecCceeeeeccccceeeEeeeccCC---CCceEEEEeeCCeee-eceeeEEEeecCCee----------eecCcCCCcee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDV---NQGLLIEVWDKGIIW-DRAIGYHYLPLPQVA----------FSNEVGSRKTA   73 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~---~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~----------~s~e~g~g~W~   73 (85)
                      ++.||.||+       +|.|.+...   +.-|.|+|||++.+- |++||.+.|||..+.          .+......+|+
T Consensus        71 ~t~nP~wne-------~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~  143 (159)
T 1tjx_A           71 NTLNPYYNE-------SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWH  143 (159)
T ss_dssp             SCSSCEEEE-------EEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             CCCCCcccc-------eEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEE
Confidence            456899999       888876433   346999999999874 899999999999752          12233445788


Q ss_pred             Eeec
Q psy8569          74 GVKG   77 (85)
Q Consensus        74 ~l~~   77 (85)
                      .|..
T Consensus       144 ~L~~  147 (159)
T 1tjx_A          144 TLQV  147 (159)
T ss_dssp             ECBC
T ss_pred             ECcC
Confidence            8764

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=98.71  E-value=1.6e-08  Score=65.73  Aligned_cols=51  Identities=14%  Similarity=-0.046  Sum_probs=40.2

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccCC--C-CceEEEEeeCCee-eeceeeEEEeecCC
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETNDV--N-QGLLIEVWDKGII-WDRAIGYHYLPLPQ   60 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d~--~-~gL~vEVWnKgvi-wDdLLG~~~lPL~~   60 (85)
                      ||-.+ ++.||.||+       +|.|.+...  . .-|.|+|||++.+ -|++||.+.|||+.
T Consensus        70 kT~v~~~t~nP~wne-------~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A           70 KTHVKKCTPNAVFNE-------LFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             ECCCCCSCSSEEEEE-------EEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred             ecCcccCCCCCeecc-------eEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence            44444 455899999       787776543  2 4699999999987 58999999999987

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=98.69  E-value=1.1e-08  Score=64.58  Aligned_cols=53  Identities=19%  Similarity=0.188  Sum_probs=41.2

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCCC---CceEEEEeeCCee-eeceeeEEEeecCCee
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDVN---QGLLIEVWDKGII-WDRAIGYHYLPLPQVA   62 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~~---~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~   62 (85)
                      ||..++ +.||.||+       +|.|+.....   .-|.|+|||++.+ -|++||.+.|||.++.
T Consensus        56 kT~~~~~t~nP~wne-------~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           56 KTVTKKRNLNPIFNE-------SFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             ECCCCSSCSSCEEEE-------EEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred             eCccccCCCCCcCcc-------eEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence            343444 56899999       8888764433   4699999999987 5899999999999753

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=98.66  E-value=3.7e-08  Score=69.15  Aligned_cols=66  Identities=14%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             eeeeeec-CceeeeeccccceeeEeeeccC--C-CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNVIG-SNFRWSVFSVKTRFEVPSETND--V-NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~g-~~P~W~~~~~~~~~~f~fet~d--~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||-++++ .||.||+       +|.|....  + ..-|.|+|||.+.+ -|++||.+.+||..+..  +..-..|..|..
T Consensus        57 ~T~~~~~~~nP~wne-------~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~--~~~~~~w~~L~~  127 (284)
T 2r83_A           57 ETKVHRKTLNPVFNE-------QFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF--GHVTEEWRDLQS  127 (284)
T ss_dssp             ECCCCCSCSSCEEEE-------EEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCC--SSCEEEEEECBC
T ss_pred             eCCcccCCCCCeeCc-------eEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhccc--CCcceeEEEeec
Confidence            3444444 5899999       88887643  3 35899999999987 48999999999999976  344567887753

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=98.59  E-value=4.7e-08  Score=65.90  Aligned_cols=66  Identities=11%  Similarity=0.078  Sum_probs=49.5

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccCC---CCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETNDV---NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d~---~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ||-.+ +..||.||+       +|.|.+...   +.-|.|+|||.|.. =||+||.+.|||+++..+ .....+|+.|.
T Consensus        84 kT~v~~~tlnP~wnE-------~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~-~~~~~~W~~L~  154 (155)
T 2z0u_A           84 RTRPLDASDTLVFNE-------VFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS-GERSTRWYNLL  154 (155)
T ss_dssp             ECCCEECCSSEEEEE-------EEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTT-CCCEEEEEEEB
T ss_pred             eCCcCCCCCCCcccc-------EEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCC-CCccccceEcc
Confidence            44444 456899999       888876432   45799999999865 589999999999999632 34556888763

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=98.55  E-value=8.5e-08  Score=63.45  Aligned_cols=47  Identities=23%  Similarity=0.223  Sum_probs=38.9

Q ss_pred             ecCceeeeeccccceeeEeeeccC--C-CCceEEEEeeCCee-eeceeeEEEeecCCe
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETND--V-NQGLLIEVWDKGII-WDRAIGYHYLPLPQV   61 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d--~-~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v   61 (85)
                      ++.||.||+       +|.|....  + +.-|.|+|||++.+ -|++||.+.|||..+
T Consensus        83 ~t~nP~wne-------~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A           83 KTLNPEFNE-------EFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             SCSSCEEEE-------EEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCcccc-------eEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence            456899999       77777643  2 45899999999987 479999999999985

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=98.39  E-value=3.1e-07  Score=77.39  Aligned_cols=61  Identities=11%  Similarity=0.080  Sum_probs=51.7

Q ss_pred             ecCceeeeeccccceeeEeeeccC-CCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETND-VNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d-~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ++.||.||+       +|.|...+ ...-|.|+|||+|.+-||+||.+.|||..|..  +.....|..|++
T Consensus        65 ~tlNPvWNE-------tF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~--g~~~~~w~~L~~  126 (749)
T 1cjy_A           65 NDINPVWNE-------TFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKV--GEKKEVPFIFNQ  126 (749)
T ss_dssp             TCSSCEEEE-------EEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCT--TCCCCEEEEETT
T ss_pred             CCCCCeeee-------EEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCC--CCceEEEEecCC
Confidence            467899999       88888866 45589999999998779999999999999965  566788998864

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=98.35  E-value=4.6e-07  Score=63.56  Aligned_cols=68  Identities=13%  Similarity=0.017  Sum_probs=48.4

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCCC---CceEEEEeeCCee-eeceeeEEEeecCCeee----------ecCc
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDVN---QGLLIEVWDKGII-WDRAIGYHYLPLPQVAF----------SNEV   67 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~~---~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~----------s~e~   67 (85)
                      ||-.++ ..||.||+       .|.|.....+   .-|.|+|||.+.+ -|++||.|.|||+++..          +...
T Consensus       190 kT~v~~~t~nP~wne-------~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~  262 (284)
T 2r83_A          190 KTTIKKNTLNPYYNE-------SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRR  262 (284)
T ss_dssp             ECCCCCSCSSCEEEE-------EEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTS
T ss_pred             ccceecCCCCCEEce-------eEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCC
Confidence            343444 46899999       8888774332   2599999999976 68999999999987532          1122


Q ss_pred             CCCceeEeec
Q psy8569          68 GSRKTAGVKG   77 (85)
Q Consensus        68 g~g~W~~l~~   77 (85)
                      ...+|+.|++
T Consensus       263 ~~~~W~~L~~  272 (284)
T 2r83_A          263 PIAQWHTLQV  272 (284)
T ss_dssp             CEEEEEECBC
T ss_pred             chheeeecCC
Confidence            3357888875

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=98.33  E-value=2.7e-07  Score=69.66  Aligned_cols=65  Identities=17%  Similarity=0.264  Sum_probs=49.5

Q ss_pred             eecCceeeeeccccceeeEeeeccCCCC-ceEEEEeeCCeee-eceeeEEEeecCCeeeecC-cC-CCceeEeecc
Q psy8569           7 VIGSNFRWSVFSVKTRFEVPSETNDVNQ-GLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNE-VG-SRKTAGVKGL   78 (85)
Q Consensus         7 v~g~~P~W~~~~~~~~~~f~fet~d~~~-gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e-~g-~g~W~~l~~~   78 (85)
                      -++.||.|++       +|.|...+... -|.|+|||+|..- ||+||.+.+||+.+....+ .+ -..|..+++-
T Consensus       427 ~~t~nP~w~e-------~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~  495 (510)
T 3jzy_A          427 QDTLNPKWNF-------NCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV  495 (510)
T ss_dssp             SSCSSCEEEE-------EEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS
T ss_pred             CCCCCCccCc-------eEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC
Confidence            3467899999       88888765553 5999999999875 7999999999999876321 11 3567777653

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=98.21  E-value=2.1e-07  Score=72.88  Aligned_cols=66  Identities=9%  Similarity=0.043  Sum_probs=10.0

Q ss_pred             eeeeeec----CceeeeeccccceeeEeeeccCCCCceEEEEeeC-C----eeeeceeeEEEeecCCeeeecCcCCCcee
Q psy8569           3 KESNVIG----SNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDK-G----IIWDRAIGYHYLPLPQVAFSNEVGSRKTA   73 (85)
Q Consensus         3 ~~~~v~g----~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnK-g----viwDdLLG~~~lPL~~v~~s~e~g~g~W~   73 (85)
                      ||-+++.    .||.||+       +|.|......+-|.|+|||+ +    +.-|++||.+.|||.++..  +....+|+
T Consensus        42 kT~v~~kt~~glnP~WnE-------~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~--~~~~~~W~  112 (483)
T 3bxj_A           42 RTTSKPRSASGDTVFWGE-------HFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAG--RHFTEQWY  112 (483)
T ss_dssp             -----------------C-------CEECC--------------------------------------------CCEECC
T ss_pred             eeeEEeCCCCCCCCcccc-------EEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcC--CCCCCeEE
Confidence            4555554    6999999       88888544457899999995 3    5789999999999999986  44567898


Q ss_pred             Eeec
Q psy8569          74 GVKG   77 (85)
Q Consensus        74 ~l~~   77 (85)
                      .|.+
T Consensus       113 ~L~~  116 (483)
T 3bxj_A          113 PVTL  116 (483)
T ss_dssp             ----
T ss_pred             ECCC
Confidence            8854

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=98.19  E-value=1.2e-06  Score=70.82  Aligned_cols=48  Identities=23%  Similarity=0.317  Sum_probs=39.5

Q ss_pred             eeecCceeeeeccccceeeEeeeccC--CCCceEEEEeeCCeeee-ceeeEEEeecCC
Q psy8569           6 NVIGSNFRWSVFSVKTRFEVPSETND--VNQGLLIEVWDKGIIWD-RAIGYHYLPLPQ   60 (85)
Q Consensus         6 ~v~g~~P~W~~~~~~~~~~f~fet~d--~~~gL~vEVWnKgviwD-dLLG~~~lPL~~   60 (85)
                      .-+..||.||+       +|.|...+  .++-|.|||||+|...+ |+||.+.+||..
T Consensus       432 ik~tlNP~Wne-------~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~~  482 (540)
T 3nsj_A          432 VWNNNNPRWTD-------KMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHS  482 (540)
T ss_dssp             BCSCSSCBCCC-------CEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCCS
T ss_pred             ecCCCCCCCCe-------EEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEeeC
Confidence            33466899999       78887543  56679999999999876 999999999983

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=98.06  E-value=3.4e-06  Score=68.73  Aligned_cols=63  Identities=16%  Similarity=0.138  Sum_probs=47.7

Q ss_pred             eeeeeec--CceeeeeccccceeeEeeeccCCC-CceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNVIG--SNFRWSVFSVKTRFEVPSETNDVN-QGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~g--~~P~W~~~~~~~~~~f~fet~d~~-~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||-+++.  .||.||+       +|.|.....+ .-|+|+|||.+.+ -||+||.+.|||..|..  +.   .|+-|..
T Consensus       539 kTkvi~~ng~NP~WnE-------~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~--G~---r~v~L~d  605 (624)
T 1djx_A          539 QTAVITNNGFNPRWDM-------EFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ--GY---RHVHLLS  605 (624)
T ss_dssp             ECCCCTTCSSSCEEEE-------EEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCC--EE---EEEEEEC
T ss_pred             ecccccCCCCCCccCc-------eEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCC--Cc---EEEeCCC
Confidence            5656665  5999999       7777664433 4699999999977 68999999999999976  21   3666643

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=97.96  E-value=2.1e-06  Score=61.57  Aligned_cols=68  Identities=18%  Similarity=0.048  Sum_probs=48.4

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCC---CCceEEEEeeCCee-eeceeeEEEeecCCeee-----------ecC
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDV---NQGLLIEVWDKGII-WDRAIGYHYLPLPQVAF-----------SNE   66 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~---~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~-----------s~e   66 (85)
                      ||..++ ..||.||+       .|.|.....   +.-|.|+|||.+.. -|++||.+.|||+.+..           +..
T Consensus       192 kT~v~~~t~nP~wne-------~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~  264 (296)
T 1dqv_A          192 KTSIKKNTLNPTYNE-------ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPR  264 (296)
T ss_dssp             ECCCCCSCSSCEEEE-------CCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSS
T ss_pred             ecceecCCCCCeECc-------eEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCC
Confidence            454444 45799999       777776432   23799999999976 68999999999997643           123


Q ss_pred             cCCCceeEeec
Q psy8569          67 VGSRKTAGVKG   77 (85)
Q Consensus        67 ~g~g~W~~l~~   77 (85)
                      ....+|+.|..
T Consensus       265 ~~~~~w~~L~~  275 (296)
T 1dqv_A          265 KPVEHWHQLVE  275 (296)
T ss_dssp             SCSCSCCCCBB
T ss_pred             CceeEeeeccC
Confidence            34456776654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=97.93  E-value=6.8e-06  Score=70.51  Aligned_cols=51  Identities=18%  Similarity=0.281  Sum_probs=39.9

Q ss_pred             eeeeee--cCceeeeeccccceee-Eeee-c-cCCCCceEEEEeeCCeeeeceeeEEEeecCCeee
Q psy8569           3 KESNVI--GSNFRWSVFSVKTRFE-VPSE-T-NDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         3 ~~~~v~--g~~P~W~~~~~~~~~~-f~fe-t-~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~   63 (85)
                      ||-+|+  |.||.||+       + |.|. + ...-.-|+|+|||.|   ||+||.+.|||.+|+.
T Consensus       762 kTkvi~~NglNPvWnE-------e~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~  817 (885)
T 3ohm_B          762 RTRTSQGNSFNPVWDE-------EPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRS  817 (885)
T ss_dssp             CCCCCSSCSSSCBCCC-------CCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCC
T ss_pred             eeEEeeCCCcCCeecc-------ceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCC
Confidence            566665  57999998       5 6666 3 222235999999999   9999999999999875

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=97.92  E-value=1.3e-05  Score=57.48  Aligned_cols=66  Identities=14%  Similarity=-0.006  Sum_probs=44.9

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCC---CCceEEEEeeCCee-eeceeeEEEee-cCCeeeecCcCCCceeEee
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDV---NQGLLIEVWDKGII-WDRAIGYHYLP-LPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~---~~gL~vEVWnKgvi-wDdLLG~~~lP-L~~v~~s~e~g~g~W~~l~   76 (85)
                      ||-+++ +.||.|++       +|.|.....   +.-|.|+|||.+.+ -|++||.+.+| |..+... ......|..|.
T Consensus        58 kT~v~~~t~nP~wne-------~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~-~~~~~~w~~L~  129 (296)
T 1dqv_A           58 QTKVHRKTLNPIFNE-------TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPLWRDIL  129 (296)
T ss_dssp             ECCCCCSCSSCEEEE-------EEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSS-CSSCCCCEECB
T ss_pred             eCCccCCCCCCcEee-------EEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccC-Cccceeeeccc
Confidence            444444 57899999       888876432   34799999999976 48999999996 4333221 22344677764

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=97.80  E-value=1.7e-05  Score=67.40  Aligned_cols=51  Identities=16%  Similarity=0.094  Sum_probs=40.1

Q ss_pred             eeeeee--cCceeeeeccccceee-Eeee-ccCC-CCceEEEEeeCCeeeeceeeEEEeecCCeee
Q psy8569           3 KESNVI--GSNFRWSVFSVKTRFE-VPSE-TNDV-NQGLLIEVWDKGIIWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         3 ~~~~v~--g~~P~W~~~~~~~~~~-f~fe-t~d~-~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~   63 (85)
                      ||-+|+  |.||.||+       + |.|. +... -.=|+|+|||.+   ||+||.+.|||+.|+.
T Consensus       688 kTkvv~~nglNPvWNE-------~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~  743 (816)
T 3qr0_A          688 KTKIIENNGMDPYYDE-------KVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKP  743 (816)
T ss_dssp             ECCCBCSCSSCCBCCC-------CCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCC
T ss_pred             eeEEecCCCCCCeEcC-------ceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCC
Confidence            566666  46999999       6 7776 4222 236999999987   9999999999999875

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=97.63  E-value=3.1e-05  Score=65.08  Aligned_cols=50  Identities=16%  Similarity=0.339  Sum_probs=38.9

Q ss_pred             eee-eee--cCceeeeeccccceee-Eee-ec--cCCCCceEEEEeeCCeeeeceeeEEEeecCCeee
Q psy8569           3 KES-NVI--GSNFRWSVFSVKTRFE-VPS-ET--NDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         3 ~~~-~v~--g~~P~W~~~~~~~~~~-f~f-et--~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~   63 (85)
                      ||- +|+  |.||.||+       + |.| .+  .++. -|+|+|||.+   ||+||.+.|||+.|..
T Consensus       715 kTk~vv~~n~~NPvWnE-------e~f~F~~v~~~el~-~Lr~~V~D~d---~d~iG~~~ipl~~L~~  771 (799)
T 2zkm_X          715 RTKLSPSTNSINPVWKE-------EPFVFEKILMPELA-SLRVAVMEEG---NKFLGHRIIPINALNS  771 (799)
T ss_dssp             ECCCCSSSCCSSCBCCC-------CCEEEEEESSGGGC-EEEEEEEETT---TEEEEEEEEEGGGBCC
T ss_pred             eecccccCCCCCCeeec-------ceEEEEEEccCCcc-EEEEEEEEeC---CCccceEeeehhhcCC
Confidence            454 565  46999998       5 666 33  2322 6999999998   9999999999999975

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=97.54  E-value=3.4e-05  Score=61.70  Aligned_cols=63  Identities=16%  Similarity=0.291  Sum_probs=46.5

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeecc--CCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEe
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETN--DVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGV   75 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~--d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l   75 (85)
                      ||..+ +..||.||+       .|.|...  +.+.-|.|||||.+.. -||+||.+.+||+.+...   +...|..+
T Consensus       212 kT~v~~~tlnP~wne-------~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~---~~~~w~~L  278 (674)
T 3pfq_A          212 KTKTIKSSLNPEWNE-------TFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA---GVDGWFKL  278 (674)
T ss_dssp             ECCCCSSCSSCEEEE-------EEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHC---CEEEEEEC
T ss_pred             cccccccccCCCccc-------eeeeecccCCccceeeeEEeecccccccccccccccchhhhccC---Ccccceee
Confidence            33344 456799999       6666654  4455699999999877 469999999999998763   23667665

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=96.66  E-value=0.0018  Score=45.78  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=41.6

Q ss_pred             eeeeee--cCceeeeeccccceeeEeeecc-CCCCceEEEEeeCCee-eeceeeEEEeecCCeeee
Q psy8569           3 KESNVI--GSNFRWSVFSVKTRFEVPSETN-DVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFS   64 (85)
Q Consensus         3 ~~~~v~--g~~P~W~~~~~~~~~~f~fet~-d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s   64 (85)
                      ||-.++  +.||.|||     .|+|+..-+ |-+.-|.|.|.|-+-+ =|++||++.|||+.|..+
T Consensus        51 kTkvi~~~~~npvfnE-----~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~  111 (144)
T 3l9b_A           51 YSRVLENCEDVADFDE-----TFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEE  111 (144)
T ss_dssp             ECCCEEEECSCEEEEE-----EEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHH
T ss_pred             eeEEeccCCCCceEcc-----eEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccC
Confidence            566675  88999999     444444442 3333699999987765 579999999999887653

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=89.75  E-value=0.16  Score=35.81  Aligned_cols=57  Identities=18%  Similarity=0.105  Sum_probs=44.6

Q ss_pred             cCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeee---cCcCCCceeEee
Q psy8569           9 GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFS---NEVGSRKTAGVK   76 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s---~e~g~g~W~~l~   76 (85)
                      -+.|.|++       +|.-++.+ ..-|.|-|-.+..   +++.-|.|+|..|...   ++....-|+.||
T Consensus        58 T~~P~Wne-------~Fd~~V~~-Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe  117 (138)
T 2enj_A           58 TMYPPWDS-------TFDAHINK-GRVMQIIVKGKNV---DLISETTVELYSLAERCRKNNGKTEIWLELK  117 (138)
T ss_dssp             EECCCSSS-------EEEECCCS-SCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTTTCEEEEEECB
T ss_pred             CCCccccc-------eEeeeEEC-CeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc
Confidence            35799999       88877544 3347777888777   9999999999999865   455668898887

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=89.45  E-value=0.13  Score=35.71  Aligned_cols=56  Identities=7%  Similarity=0.028  Sum_probs=43.8

Q ss_pred             CceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeee---cCcCCCceeEee
Q psy8569          10 SNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFS---NEVGSRKTAGVK   76 (85)
Q Consensus        10 ~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s---~e~g~g~W~~l~   76 (85)
                      +.|.|++       +|.-+..+ ..-|.+-|-.+..   +++.-|.|+|..|...   ++....-|+.||
T Consensus        54 ~~P~Wne-------~Fd~~V~~-Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe  112 (126)
T 1yrk_A           54 MYPEWKS-------TFDAHIYE-GRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ  112 (126)
T ss_dssp             BCCCTTC-------EEEEECCT-TCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB
T ss_pred             CCcCccc-------eEEeeeeC-CEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc
Confidence            6799999       88887544 3347777777777   9999999999999864   345567898887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	85
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.67
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.03
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	98.96
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	98.93
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	98.92
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	98.85
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	98.82
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	98.82
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	98.7
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	98.66
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	98.64
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	98.61
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	98.59
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	98.48
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	98.43
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	98.42
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	98.4
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	98.38
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	98.23
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	97.96

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=4.4e-17  Score=107.91  Aligned_cols=69  Identities=33%  Similarity=0.624  Sum_probs=65.0

Q ss_pred             ceeeeeecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           2 RKESNVIGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         2 ~~~~~v~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      .+|..++|+||.|++       +|.|.+.+.+..|.|+|||++.+.|++||.+.|||++|..+++.++++|+.|..
T Consensus        33 ~~T~~~k~~nP~Wne-------~f~f~v~~~~~~L~v~V~d~~~~~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~  101 (128)
T d2cjta1          33 STTIAVRGSQPSWEQ-------DFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS  101 (128)
T ss_dssp             EECCCEESSSCEEEE-------EEEEEECCCSSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred             EEEEEecCCCCeEEE-------EEEEeeccccceEEEEEEeCCCcCCcceEEEEEEehhhccCCCCCCCeeEECCc
Confidence            467888999999999       999999999889999999999999999999999999999999999999999953

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.4e-10  Score=72.47  Aligned_cols=66  Identities=11%  Similarity=0.093  Sum_probs=53.9

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeeccCCCC-ceEEEEeeCCeeeeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETNDVNQ-GLLIEVWDKGIIWDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~d~~~-gL~vEVWnKgviwDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||-.+ .+.||.|++       +|.|...+... -|.|+|||++..=|++||.+.+||+++..  +....+|+.|++
T Consensus        44 ~T~~~~~t~nP~wne-------~f~f~i~~~~~~~L~v~V~d~d~~~d~~lG~~~i~L~~l~~--~~~~~~~~~L~~  111 (126)
T d1rlwa_          44 RTRHFNNDINPVWNE-------TFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKV--GEKKEVPFIFNQ  111 (126)
T ss_dssp             ECCCCTTCSSCEEEE-------EEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCT--TCEEEEEEEETT
T ss_pred             EeeecCCCccceece-------eeeecccCcccCcEEEEEEECCCCCCCeEEEEEEEHHHccC--CCeEEEEEEccC
Confidence            44444 456799999       88888766554 69999999999999999999999999965  666778998864

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.8e-10  Score=72.51  Aligned_cols=64  Identities=19%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      +|.+++ +.||.|++       +|.|...+..+-|.|+|||++..- |++||.|.|||+++..    +..+|..|+.
T Consensus        41 ~T~~~~~t~nP~wne-------~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~----~~~~~~~l~~  106 (126)
T d2ep6a1          41 QTHTVYKNLNPEWNK-------VFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD----GQPNCYVLKN  106 (126)
T ss_dssp             ECCCCSSCSSCCCCE-------EEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCS----SCCEECCCBC
T ss_pred             EEEeeCCceeEEEEE-------EEEEEEeccCceeEEEEEEccCCcCcceEEEEEEEHHHCCC----CCceEEEccc
Confidence            344454 56799999       899998888888999999998765 7999999999999854    3457877653

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=98.93  E-value=1.6e-10  Score=74.66  Aligned_cols=66  Identities=8%  Similarity=0.101  Sum_probs=52.8

Q ss_pred             eeeee-cCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           4 ESNVI-GSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         4 ~~~v~-g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      +.+++ +++|.|++       +|.|...+ .+-|.|+|||++... |++||.|.|||+.+....+.....|+.|+.
T Consensus        54 T~~~~~t~~P~Wne-------~f~f~v~~-~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p  121 (136)
T d1gmia_          54 TATKQKTNSPAWHD-------EFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP  121 (136)
T ss_dssp             CCCCSSCSSCEEEE-------EEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS
T ss_pred             eeEEcCCCCccCcc-------EEEEEEec-CCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC
Confidence            44444 55799999       88887765 357999999998874 799999999999998766666778998873

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=1.8e-10  Score=73.19  Aligned_cols=61  Identities=20%  Similarity=0.257  Sum_probs=48.9

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      ++.||.||+       +|.|...+....|.|||||++.+ -|++||.+.|||.++... .....+|..+.
T Consensus        52 ~~~nP~Wne-------~f~f~v~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~-~~~~~~~~~l~  113 (136)
T d1wfja_          52 MGTTPEWNE-------TFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVE-GSIPPTAYNVV  113 (136)
T ss_dssp             CCSSCEEEE-------EEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHH-SEEEEEEEEEE
T ss_pred             CCCcEEEee-------EEEEEEcCccceEEEEEEEecCCCCCCEEEEEEEEhHHhccc-CCcCcEEEEec
Confidence            367899999       88888887777899999999987 689999999999988553 33345676663

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=1.1e-09  Score=69.29  Aligned_cols=65  Identities=15%  Similarity=0.268  Sum_probs=49.4

Q ss_pred             ceeeeeecC-ceeeeeccccceeeEeeeccC--CCCceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           2 RKESNVIGS-NFRWSVFSVKTRFEVPSETND--VNQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         2 ~~~~~v~g~-~P~W~~~~~~~~~~f~fet~d--~~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      +||..++++ ||.|++       .|.|...+  .+.-|.|+|||++..- |++||.+.|||+++..+   +-.+|..|.
T Consensus        54 ~kT~v~~~t~nP~wne-------~f~f~v~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~---~~~~W~~L~  122 (132)
T d1a25a_          54 QKTKTIKCSLNPEWNE-------TFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA---GVDGWFKLL  122 (132)
T ss_dssp             EECCCCSSCSSCEEEE-------EEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC---CEEEEEECB
T ss_pred             cEEeeecCCCCCccce-------EEEEEeEccccCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC---CCCeEEECC
Confidence            456666555 799999       77777644  3456999999998875 78999999999998652   235798874

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=1.5e-09  Score=68.58  Aligned_cols=60  Identities=17%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             cCceeeeeccccceeeEeeeccC----CCCceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           9 GSNFRWSVFSVKTRFEVPSETND----VNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~f~fet~d----~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ..||.||+       .|.|....    ...-|.|+|||++.+ -|++||.|.|||.++..  .....+|+.|+.
T Consensus        74 t~nP~wne-------~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~--~~~~~~W~~L~~  138 (142)
T d1rh8a_          74 SLNPEWNQ-------TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH--LDNTPRWYPLKE  138 (142)
T ss_dssp             HHSCEEEE-------EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG--GTTCCEEEECBC
T ss_pred             CCCceeEE-------EEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCC--CCCceEEEECcC
Confidence            34899999       88876432    234699999999865 48999999999999987  455568998864

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=1.6e-09  Score=69.10  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=42.7

Q ss_pred             eeeeeecC--ceeeeeccccceeeEeeeccCCC-CceEEEEeeCCeee-eceeeEEEeecCCeee
Q psy8569           3 KESNVIGS--NFRWSVFSVKTRFEVPSETNDVN-QGLLIEVWDKGIIW-DRAIGYHYLPLPQVAF   63 (85)
Q Consensus         3 ~~~~v~g~--~P~W~~~~~~~~~~f~fet~d~~-~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~   63 (85)
                      ||-+|+.+  ||.|++       +|.|...... .-|.|+|||+|..- |++||.+.|||+++..
T Consensus        46 ~T~~v~~~~~nP~wne-------~f~f~~~~~~~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~  103 (131)
T d1qasa2          46 QTAVITNNGFNPRWDM-------EFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ  103 (131)
T ss_dssp             ECCCCSSCSSSCEEEE-------EEEEEESCGGGCEEEEEEEECCTTTCCEEEEEEEEEGGGBCC
T ss_pred             EEEEEecccCCceEEE-------EEEEEEEcchhceEEEEEEEecCCCCCcEEEEEEEEEeccCC
Confidence            45556544  899999       8888764333 35999999999886 7899999999999864

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=1.4e-08  Score=64.34  Aligned_cols=68  Identities=12%  Similarity=-0.034  Sum_probs=49.8

Q ss_pred             ceeeeeecC-ceeeeeccccceeeEeeec--cCCCC-ceEEEEeeCCee-eeceeeEEEeecCCeeeecCcCCCceeEee
Q psy8569           2 RKESNVIGS-NFRWSVFSVKTRFEVPSET--NDVNQ-GLLIEVWDKGII-WDRAIGYHYLPLPQVAFSNEVGSRKTAGVK   76 (85)
Q Consensus         2 ~~~~~v~g~-~P~W~~~~~~~~~~f~fet--~d~~~-gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s~e~g~g~W~~l~   76 (85)
                      +||..++++ +|.|++       +|.|..  .++.. -|.|+|||.+.+ -|++||.+.||+.....+.......|..|+
T Consensus        55 ~kT~v~~~t~~P~wne-------~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~  127 (130)
T d1dqva1          55 FQTKVHRKTLNPIFNE-------TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL  127 (130)
T ss_dssp             EECCCCCSCSSCEEEE-------EEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred             EeceeEcCCCCeeeee-------EEEEEEchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence            356666655 799999       777665  44333 599999999865 589999999998766555444555698775

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=9.3e-09  Score=65.87  Aligned_cols=66  Identities=14%  Similarity=0.166  Sum_probs=49.9

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeecc--CCC-CceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSETN--DVN-QGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet~--d~~-~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||..++ +.||.||+       +|.|.+.  ++. .-|+|+|||++.+- |++||.+.|||.++..  +....+|..|+.
T Consensus        72 kT~~~~~t~~P~wne-------~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~--~~~~~~W~~L~s  142 (143)
T d1rsya_          72 ETKVHRKTLNPVFNE-------QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF--GHVTEEWRDLQS  142 (143)
T ss_dssp             ECCCCTTCSSCEEEE-------EEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCC--SSCEEEEEECBC
T ss_pred             EEEEeccccCcceee-------eeEEEEEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccC--CCCCccEEeCCC
Confidence            444444 56799999       7777663  333 36999999998765 6899999999999976  344568998874

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.2e-08  Score=65.60  Aligned_cols=54  Identities=17%  Similarity=0.237  Sum_probs=43.5

Q ss_pred             eeeeeec-CceeeeeccccceeeEeeeccCCCCceEEEEeeCCee-eeceeeEEEeecCCeeee
Q psy8569           3 KESNVIG-SNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGII-WDRAIGYHYLPLPQVAFS   64 (85)
Q Consensus         3 ~~~~v~g-~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgvi-wDdLLG~~~lPL~~v~~s   64 (85)
                      ||.++++ .||.||+       .|.|...+ .+-|.|+|||++.+ -|++||.+.+||.++-..
T Consensus        41 kT~v~~~t~nP~wne-------~f~f~~~~-~~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~   96 (133)
T d2nq3a1          41 KTEKCNNTNSPKWKQ-------PLTVIVTP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKS   96 (133)
T ss_dssp             ECCCCSSCSSCEEEE-------EEEEEECT-TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHH
T ss_pred             eeEEEEecccEEEcc-------eEEEEEEe-cceeEEEEEEccCCCCCceEEEEEEEHHHhhhh
Confidence            4545555 6899999       88888765 45799999999987 579999999999987553

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.5e-08  Score=63.13  Aligned_cols=66  Identities=11%  Similarity=0.078  Sum_probs=50.3

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeecc--CCCC-ceEEEEeeCCeee-eceeeEEEeecCCeeeecCcCCCceeEeec
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETN--DVNQ-GLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSNEVGSRKTAGVKG   77 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~--d~~~-gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~e~g~g~W~~l~~   77 (85)
                      ||-++ ++.+|.|++       .|.|+..  ++.. -|.|+|||.+-+- |++||.+.|||.++..  ..+..+|..|+-
T Consensus        62 kT~v~~~~~~P~wne-------~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~--~~~~~~W~~L~~  132 (138)
T d1wfma_          62 QTALKKRQLHTTWEE-------GLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV--PLGAAQWGELKT  132 (138)
T ss_dssp             ECCCCCCCSSEECSS-------CEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSS--CTTCCEEEECCC
T ss_pred             eeeEECCCCCceEee-------eEEEEeeehhccceEEEEEEeeecccccceeeeEEEEEhHHccC--CCCceEeEeCCC
Confidence            34444 457899999       7777663  3333 5999999988655 7899999999999965  666789998863

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.8e-08  Score=62.13  Aligned_cols=64  Identities=14%  Similarity=0.254  Sum_probs=44.1

Q ss_pred             eeeeee-cCceeeeeccccceeeEeeec---cCCC-CceEEEEeeCCee-e--eceeeEEEeecCCeeeecCcCCCceeE
Q psy8569           3 KESNVI-GSNFRWSVFSVKTRFEVPSET---NDVN-QGLLIEVWDKGII-W--DRAIGYHYLPLPQVAFSNEVGSRKTAG   74 (85)
Q Consensus         3 ~~~~v~-g~~P~W~~~~~~~~~~f~fet---~d~~-~gL~vEVWnKgvi-w--DdLLG~~~lPL~~v~~s~e~g~g~W~~   74 (85)
                      ||-.++ +++|.||+       .|.|..   .++. .-|.|+|||.+.. .  |++||.+.|||+.+...++   .+|+.
T Consensus        54 kT~~~~~t~~P~wne-------~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~---~~Wy~  123 (125)
T d2bwqa1          54 RTKTVKKTLEPKWNQ-------TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE---PHWYK  123 (125)
T ss_dssp             ECCCCSSBSSCEEEE-------EEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSC---EEEEE
T ss_pred             ccCEEcCCCCCEEcc-------EEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCC---CEEEe
Confidence            444454 45899999       888863   2222 2599999998864 3  4699999999999876433   36998


Q ss_pred             ee
Q psy8569          75 VK   76 (85)
Q Consensus        75 l~   76 (85)
                      ||
T Consensus       124 L~  125 (125)
T d2bwqa1         124 LQ  125 (125)
T ss_dssp             CC
T ss_pred             Cc
Confidence            85

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=7.7e-08  Score=61.48  Aligned_cols=56  Identities=14%  Similarity=0.128  Sum_probs=41.9

Q ss_pred             eeeee-ecCceeeeeccccceeeEeeecc---CC-CCceEEEEeeCCeee-eceeeEEEeecCCeeeec
Q psy8569           3 KESNV-IGSNFRWSVFSVKTRFEVPSETN---DV-NQGLLIEVWDKGIIW-DRAIGYHYLPLPQVAFSN   65 (85)
Q Consensus         3 ~~~~v-~g~~P~W~~~~~~~~~~f~fet~---d~-~~gL~vEVWnKgviw-DdLLG~~~lPL~~v~~s~   65 (85)
                      ||-++ .+.||.||+       .|.|...   ++ +..|.|+|||.+... |++||.|.|||+++.-+.
T Consensus        61 kT~v~~~t~nP~wne-------~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~  122 (138)
T d1ugka_          61 KTRVLRKTLDPAFDE-------TFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE  122 (138)
T ss_dssp             ECCCCSSCSSCEEEE-------EEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTT
T ss_pred             eCeeEeCCCCCceee-------EEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCC
Confidence            44444 456799999       8877532   22 236999999988775 799999999999986533

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=3.9e-08  Score=63.15  Aligned_cols=58  Identities=7%  Similarity=0.029  Sum_probs=46.2

Q ss_pred             ecCceeeeeccccceeeEeeeccCCCCceEEEEeeCCeeeeceeeEEEeecCCeeee---cCcCCCceeEee
Q psy8569           8 IGSNFRWSVFSVKTRFEVPSETNDVNQGLLIEVWDKGIIWDRAIGYHYLPLPQVAFS---NEVGSRKTAGVK   76 (85)
Q Consensus         8 ~g~~P~W~~~~~~~~~~f~fet~d~~~gL~vEVWnKgviwDdLLG~~~lPL~~v~~s---~e~g~g~W~~l~   76 (85)
                      +.+||.|||       +|.|...+ .+.|.|+|||++   |+++|...|+|..|...   .+.....|+.|+
T Consensus        49 kT~nP~WnE-------~F~~~v~~-~~~l~i~V~d~d---d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~  109 (123)
T d1bdya_          49 PTMYPEWKS-------TFDAHIYE-GRVIQIVLMRAA---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ  109 (123)
T ss_dssp             CCBCCCTTC-------EEEEECCT-TCEEEEEEEEET---TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB
T ss_pred             CCCCcccce-------EEEEEEcc-ccEEEEEEEEcc---ccccCccEEehhheeeccccCCCcccEEEeCC
Confidence            566899999       99998866 457999999976   79999999999988652   233445899886

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=2.2e-07  Score=58.95  Aligned_cols=52  Identities=13%  Similarity=0.012  Sum_probs=40.6

Q ss_pred             eeeeeec-CceeeeeccccceeeEeeec--cCCCC-ceEEEEeeCCee-eeceeeEEEeecCCe
Q psy8569           3 KESNVIG-SNFRWSVFSVKTRFEVPSET--NDVNQ-GLLIEVWDKGII-WDRAIGYHYLPLPQV   61 (85)
Q Consensus         3 ~~~~v~g-~~P~W~~~~~~~~~~f~fet--~d~~~-gL~vEVWnKgvi-wDdLLG~~~lPL~~v   61 (85)
                      ||-.+++ .||.||+       +|.|..  .++.. .|.|+|||++.. -|++||.|.|+|.+.
T Consensus        55 kT~~~~~t~~P~wne-------~f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          55 KTHVKKCTPNAVFNE-------LFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             ECCCCCSCSSEEEEE-------EEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred             cceeECCCCCCeECc-------EEEEEecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence            4556666 5899999       888875  33333 599999999865 489999999999864

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=1.7e-07  Score=61.02  Aligned_cols=52  Identities=17%  Similarity=0.123  Sum_probs=41.1

Q ss_pred             eeeeeecC-ceeeeeccccceeeEeeeccCC--C-CceEEEEeeCCeee-eceeeEEEeecCCe
Q psy8569           3 KESNVIGS-NFRWSVFSVKTRFEVPSETNDV--N-QGLLIEVWDKGIIW-DRAIGYHYLPLPQV   61 (85)
Q Consensus         3 ~~~~v~g~-~P~W~~~~~~~~~~f~fet~d~--~-~gL~vEVWnKgviw-DdLLG~~~lPL~~v   61 (85)
                      ||..++++ ||.||+       +|.|.....  . .-|.|+||+.+.+- |++||.|.|||..+
T Consensus        65 kT~v~~~t~nP~wne-------~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_          65 KTTIKKNTLNPYYNE-------SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             ECCCCCSCSSCEEEE-------EEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             ecccccCCCCcccCC-------eEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccC
Confidence            55666654 899999       888876433  3 36999999998875 78999999999864

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.1e-07  Score=61.17  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=34.2

Q ss_pred             cCceeeeeccccceee-Eee-eccCCCC-ceEEEEeeCCeeeeceeeEEEeecCCeee
Q psy8569           9 GSNFRWSVFSVKTRFE-VPS-ETNDVNQ-GLLIEVWDKGIIWDRAIGYHYLPLPQVAF   63 (85)
Q Consensus         9 g~~P~W~~~~~~~~~~-f~f-et~d~~~-gL~vEVWnKgviwDdLLG~~~lPL~~v~~   63 (85)
                      |.||.||+       + |.| .....+. =|.|+|||++   ||+||.+.|||+.++.
T Consensus        47 ~~nP~wne-------~~~~~~~~~~~~l~~L~f~V~D~d---~~~lG~~~ipl~~l~~   94 (122)
T d2zkmx2          47 SINPVWKE-------EPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNS   94 (122)
T ss_dssp             CSSCBCCC-------CCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCC
T ss_pred             eecceEcc-------cEeEEEecCCCcccEEEEEEECCC---CCEEEEEEEEcccCcC
Confidence            56899997       4 323 3333333 5999999998   9999999999998765

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=9.3e-07  Score=55.06  Aligned_cols=54  Identities=22%  Similarity=0.209  Sum_probs=41.3

Q ss_pred             ceeeeeecC-ceeeeeccccceeeEeeeccC--CCC-ceEEEEeeCCee-eeceeeEEEeecCCee
Q psy8569           2 RKESNVIGS-NFRWSVFSVKTRFEVPSETND--VNQ-GLLIEVWDKGII-WDRAIGYHYLPLPQVA   62 (85)
Q Consensus         2 ~~~~~v~g~-~P~W~~~~~~~~~~f~fet~d--~~~-gL~vEVWnKgvi-wDdLLG~~~lPL~~v~   62 (85)
                      +||-.++++ +|.||+       +|.|....  +.. -|.|.||+.+.+ -|++||.|.++|.++.
T Consensus        54 ~kT~v~~~t~~P~wne-------~f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          54 HKTQIKKKTLNPEFNE-------EFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG  112 (137)
T ss_dssp             EECCCCCSCSSCEEEE-------EEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred             ecCEeEcCCCCCccce-------EEEEEeEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCccccC
Confidence            356666655 699999       77777643  333 699999999875 6789999999998753

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=9.3e-07  Score=56.21  Aligned_cols=53  Identities=23%  Similarity=0.167  Sum_probs=41.2

Q ss_pred             eeeeeecC-ceeeeeccccceeeEeeeccC--CC-CceEEEEeeCCeee-eceeeEEEeecCCee
Q psy8569           3 KESNVIGS-NFRWSVFSVKTRFEVPSETND--VN-QGLLIEVWDKGIIW-DRAIGYHYLPLPQVA   62 (85)
Q Consensus         3 ~~~~v~g~-~P~W~~~~~~~~~~f~fet~d--~~-~gL~vEVWnKgviw-DdLLG~~~lPL~~v~   62 (85)
                      ||-.++++ ||.|++       .|.|....  +. .-|.|+||+.+.+- |++||.+.|||..+.
T Consensus        60 kT~~~~~t~~P~wne-------~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          60 KTSIKKNTLNPTYNE-------ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             ECCCCCSCSSCEEEE-------CCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred             cCEEEeCCCCceecc-------eEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence            46666665 799999       88887642  22 36999999988765 689999999998764