Psyllid ID: psy8573


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTPNNEAYRNFSSELLSAVLPILDHAKVASAKMPLLQNRYTCT
ccccccEEEEEEccHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccccEEcccccHHHHHHHHHHHHHcEEEEEccccHHHHHHHHHHHHHHcccccccccccccccccccccccc
ccccccEEEEEEccHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccc
MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFssmnaasltpwyvhndtdvRNERARKAYTALLTVTartpnneayRNFSSELLSAVLPILDHAKVasakmpllqnrytct
MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLtvtartpnneAYRNFSSELLSAVLPILDHAKvasakmpllqnrytct
MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTPNNEAYRNFSSELLSAVLPILDHAKVASAKMPLLQNRYTCT
**NFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTPNNEAYRNFSSELLSAVLPILDHAKVASAK***********
***FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTPNNEAYRNFSSELLSAVLPILDHAKVASAKMPLLQNRYTCT
MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTPNNEAYRNFSSELLSAVLPILDHAKVASAKMPLLQNRYTCT
MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTPNNEAYRNFSSELLSAVLPILDHAKVASAKMPLLQNRYTCT
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFNFSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTPNNEAYRNFSSELLSAVLPILDHAKVASAKMPLLQNRYTCT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query123 2.2.26 [Sep-21-2011]
P70180 536 Atrial natriuretic peptid yes N/A 0.731 0.167 0.378 2e-08
P41740 535 Atrial natriuretic peptid yes N/A 0.731 0.168 0.378 3e-08
P17342 541 Atrial natriuretic peptid no N/A 0.731 0.166 0.378 3e-08
P10730 537 Atrial natriuretic peptid yes N/A 0.731 0.167 0.378 8e-08
P16067 1047 Atrial natriuretic peptid no N/A 0.707 0.083 0.340 5e-07
Q6VVW5 1047 Atrial natriuretic peptid no N/A 0.707 0.083 0.340 5e-07
P20594 1047 Atrial natriuretic peptid no N/A 0.707 0.083 0.340 6e-07
P46197 1047 Atrial natriuretic peptid no N/A 0.707 0.083 0.329 9e-07
P18910 1057 Atrial natriuretic peptid no N/A 0.699 0.081 0.329 2e-05
P18293 1057 Atrial natriuretic peptid no N/A 0.674 0.078 0.308 3e-05
>sp|P70180|ANPRC_MOUSE Atrial natriuretic peptide receptor 3 OS=Mus musculus GN=Npr3 PE=1 SV=3 Back     alignment and function desciption
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 5   SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVR 64
           S  VV++CA+  T+R I+LA     M  SG+Y FFNIELF+S +    + W      D  
Sbjct: 249 SERVVIMCASGDTIRRIMLAVHRHGMT-SGDYAFFNIELFNSSSYGDGS-W---RRGDKH 303

Query: 65  NERARKAYTALLTVTARTPNNEAYRNFSSELLSAV 99
           +  A++AY++L TVT        +  FS E+ S+V
Sbjct: 304 DSEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSV 338




Receptor for the natriuretic peptide hormones, binding with similar affinities atrial natriuretic peptide NPPA/ANP, brain natriuretic peptide NPPB/BNP, and C-type natriuretic peptide NPPC/CNP. May function as a clearance receptor for NPPA, NPPB and NPPC, regulating their local concentrations and effects. May regulate diuresis, blood pressure and skeletal development. Does not have guanylate cyclase activity.
Mus musculus (taxid: 10090)
>sp|P41740|ANPRC_RAT Atrial natriuretic peptide receptor 3 OS=Rattus norvegicus GN=Npr3 PE=2 SV=1 Back     alignment and function description
>sp|P17342|ANPRC_HUMAN Atrial natriuretic peptide receptor 3 OS=Homo sapiens GN=NPR3 PE=1 SV=2 Back     alignment and function description
>sp|P10730|ANPRC_BOVIN Atrial natriuretic peptide receptor 3 OS=Bos taurus GN=NPR3 PE=1 SV=2 Back     alignment and function description
>sp|P16067|ANPRB_RAT Atrial natriuretic peptide receptor 2 OS=Rattus norvegicus GN=Npr2 PE=1 SV=1 Back     alignment and function description
>sp|Q6VVW5|ANPRB_MOUSE Atrial natriuretic peptide receptor 2 OS=Mus musculus GN=Npr2 PE=2 SV=2 Back     alignment and function description
>sp|P20594|ANPRB_HUMAN Atrial natriuretic peptide receptor 2 OS=Homo sapiens GN=NPR2 PE=1 SV=1 Back     alignment and function description
>sp|P46197|ANPRB_BOVIN Atrial natriuretic peptide receptor 2 OS=Bos taurus GN=NPR2 PE=2 SV=1 Back     alignment and function description
>sp|P18910|ANPRA_RAT Atrial natriuretic peptide receptor 1 OS=Rattus norvegicus GN=Npr1 PE=1 SV=1 Back     alignment and function description
>sp|P18293|ANPRA_MOUSE Atrial natriuretic peptide receptor 1 OS=Mus musculus GN=Npr1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query123
242014720 664 Guanylate cyclase 32E precursor, putativ 0.715 0.132 0.727 5e-30
347969604 1348 AGAP003283-PA [Anopheles gambiae str. PE 0.715 0.065 0.613 1e-27
307212159 555 Atrial natriuretic peptide receptor A [H 0.747 0.165 0.688 7e-27
195110179 1487 GI24643 [Drosophila mojavensis] gi|19391 0.715 0.059 0.613 1e-26
195054577 1472 GH13987 [Drosophila grimshawi] gi|193896 0.715 0.059 0.613 1e-26
383860979 1384 PREDICTED: atrial natriuretic peptide re 0.747 0.066 0.677 2e-26
340725323 1453 PREDICTED: atrial natriuretic peptide re 0.747 0.063 0.666 2e-26
350403823 1453 PREDICTED: atrial natriuretic peptide re 0.747 0.063 0.666 2e-26
332029271 867 Atrial natriuretic peptide receptor A [A 0.747 0.106 0.666 4e-26
195328601 1417 GM25747 [Drosophila sechellia] gi|194119 0.715 0.062 0.602 4e-26
>gi|242014720|ref|XP_002428033.1| Guanylate cyclase 32E precursor, putative [Pediculus humanus corporis] gi|212512552|gb|EEB15295.1| Guanylate cyclase 32E precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/88 (72%), Positives = 71/88 (80%)

Query: 8   VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNER 67
           +VV+CANP TVREILLAAEEL M+DSGEYVFFNIEL +SMN  S TPW+  NDT  RNER
Sbjct: 141 IVVVCANPHTVREILLAAEELLMVDSGEYVFFNIELLNSMNNDSYTPWFNKNDTHERNER 200

Query: 68  ARKAYTALLTVTARTPNNEAYRNFSSEL 95
           A+KAYTALLTVTA TP N  Y  FS E+
Sbjct: 201 AKKAYTALLTVTAMTPENTEYEQFSKEV 228




Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969604|ref|XP_307791.5| AGAP003283-PA [Anopheles gambiae str. PEST] gi|333466225|gb|EAA03567.6| AGAP003283-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|307212159|gb|EFN88013.1| Atrial natriuretic peptide receptor A [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|195110179|ref|XP_001999659.1| GI24643 [Drosophila mojavensis] gi|193916253|gb|EDW15120.1| GI24643 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195054577|ref|XP_001994201.1| GH13987 [Drosophila grimshawi] gi|193896071|gb|EDV94937.1| GH13987 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|383860979|ref|XP_003705964.1| PREDICTED: atrial natriuretic peptide receptor 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340725323|ref|XP_003401021.1| PREDICTED: atrial natriuretic peptide receptor 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350403823|ref|XP_003486915.1| PREDICTED: atrial natriuretic peptide receptor 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332029271|gb|EGI69254.1| Atrial natriuretic peptide receptor A [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|195328601|ref|XP_002031003.1| GM25747 [Drosophila sechellia] gi|194119946|gb|EDW41989.1| GM25747 [Drosophila sechellia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query123
FB|FBgn0051183 1417 CG31183 [Drosophila melanogast 0.715 0.062 0.602 1.2e-24
WB|WBGene00020131 1276 gcy-28 [Caenorhabditis elegans 0.666 0.064 0.482 6.8e-15
UNIPROTKB|D6RDL8 252 NPR3 "Atrial natriuretic pepti 0.699 0.341 0.408 1.5e-09
UNIPROTKB|E1C1V5 523 LOC431663 "Uncharacterized pro 0.707 0.166 0.414 2.4e-09
UNIPROTKB|C9JK69 325 NPR3 "Atrial natriuretic pepti 0.699 0.264 0.408 3.4e-09
MGI|MGI:97373 536 Npr3 "natriuretic peptide rece 0.723 0.166 0.406 4.1e-09
RGD|3196 535 Npr3 "natriuretic peptide rece 0.723 0.166 0.406 6.8e-09
UNIPROTKB|F8WG63 536 Npr3 "Atrial natriuretic pepti 0.723 0.166 0.406 6.8e-09
UNIPROTKB|P17342 541 NPR3 "Atrial natriuretic pepti 0.723 0.164 0.406 6.9e-09
UNIPROTKB|B0JYL2 537 NPR3 "Natriuretic peptide rece 0.723 0.165 0.406 1.4e-08
FB|FBgn0051183 CG31183 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 295 (108.9 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 53/88 (60%), Positives = 70/88 (79%)

Query:     8 VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNER 67
             +V++CA+PQ++R+I+L AEELNMIDSGEYVF NIELFS +   +  PWY  NDTD+ NER
Sbjct:   294 IVIMCADPQSIRQIMLTAEELNMIDSGEYVFINIELFSRVQYLTSQPWYDKNDTDLNNER 353

Query:    68 ARKAYTALLTVTARTPNNEAYRNFSSEL 95
             A+KAYTA+LTVT + PN+  Y   S+E+
Sbjct:   354 AQKAYTAMLTVTPKQPNDNEYTRVSNEI 381




GO:0004383 "guanylate cyclase activity" evidence=ISS;NAS
GO:0016941 "natriuretic peptide receptor activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0035556 "intracellular signal transduction" evidence=IEA
GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA
GO:0004672 "protein kinase activity" evidence=IKR
GO:0006468 "protein phosphorylation" evidence=IKR
WB|WBGene00020131 gcy-28 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|D6RDL8 NPR3 "Atrial natriuretic peptide receptor 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C1V5 LOC431663 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|C9JK69 NPR3 "Atrial natriuretic peptide receptor 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:97373 Npr3 "natriuretic peptide receptor 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3196 Npr3 "natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F8WG63 Npr3 "Atrial natriuretic peptide receptor 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P17342 NPR3 "Atrial natriuretic peptide receptor 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B0JYL2 NPR3 "Natriuretic peptide receptor C/guanylate cyclase C (Atrionatriuretic peptide receptor C)" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query123
cd06373396 cd06373, PBP1_NPR_like, Ligand binding domain of n 3e-33
cd06352389 cd06352, PBP1_NPR_GC_like, Ligand-binding domain o 8e-23
cd06386387 cd06386, PBP1_NPR_C_like, Ligand-binding domain of 6e-12
pfam01094343 pfam01094, ANF_receptor, Receptor family ligand bi 4e-11
cd06385405 cd06385, PBP1_NPR_A, Ligand-binding domain of type 6e-08
cd06384399 cd06384, PBP1_NPR_B, Ligand-binding domain of type 4e-07
cd06371382 cd06371, PBP1_sensory_GC_DEF_like, Ligand-binding 6e-04
>gnl|CDD|107368 cd06373, PBP1_NPR_like, Ligand binding domain of natriuretic peptide receptor (NPR) family Back     alignment and domain information
 Score =  118 bits (299), Expect = 3e-33
 Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 3/88 (3%)

Query: 8   VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNER 67
           VV++CA+P TVREI+LAA  L +  SGEYVFFNI+LF S        W+     D  +E+
Sbjct: 204 VVIMCASPDTVREIMLAAHRLGLT-SGEYVFFNIDLFGSSLYGGGPWWW--ERGDEDDEK 260

Query: 68  ARKAYTALLTVTARTPNNEAYRNFSSEL 95
           A++AY AL+T+T R P+N  Y+ FS E+
Sbjct: 261 AKEAYQALMTITLREPDNPEYKEFSLEV 288


Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase. Length = 396

>gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors Back     alignment and domain information
>gnl|CDD|107381 cd06386, PBP1_NPR_C_like, Ligand-binding domain of type C natriuretic peptide receptor Back     alignment and domain information
>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region Back     alignment and domain information
>gnl|CDD|107380 cd06385, PBP1_NPR_A, Ligand-binding domain of type A natriuretic peptide receptor Back     alignment and domain information
>gnl|CDD|107379 cd06384, PBP1_NPR_B, Ligand-binding domain of type B natriuretic peptide receptor Back     alignment and domain information
>gnl|CDD|107366 cd06371, PBP1_sensory_GC_DEF_like, Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 123
cd06386387 PBP1_NPR_C_like Ligand-binding domain of type C na 99.52
cd06384399 PBP1_NPR_B Ligand-binding domain of type B natriur 99.34
cd06369380 PBP1_GC_C_enterotoxin_receptor Ligand-binding doma 99.33
cd06385405 PBP1_NPR_A Ligand-binding domain of type A natriur 99.17
cd06371382 PBP1_sensory_GC_DEF_like Ligand-binding domain of 99.12
cd06373396 PBP1_NPR_like Ligand binding domain of natriuretic 98.92
cd06372391 PBP1_GC_G_like Ligand-binding domain of membrane g 98.9
PF01094348 ANF_receptor: Receptor family ligand binding regio 98.67
cd06370404 PBP1_Speract_GC_like Ligand-binding domain of memb 98.5
cd06352389 PBP1_NPR_GC_like Ligand-binding domain of membrane 98.23
cd06366350 PBP1_GABAb_receptor Ligand-binding domain of GABAb 98.09
cd06367362 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali 96.76
cd06351328 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc 96.5
cd06383368 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine 96.49
cd06382327 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v 96.47
cd06379377 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/ 96.45
cd06365 469 PBP1_Pheromone_receptor Ligand-binding domain of t 96.41
cd06269298 PBP1_glutamate_receptors_like Family C G-protein c 96.31
cd06368324 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu 96.25
cd06362 452 PBP1_mGluR Ligand binding domain of the metabotrop 95.83
cd06378362 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/ 95.81
cd06374 472 PBP1_mGluR_groupI Ligand binding domain of the gro 95.78
cd06391400 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v 95.72
cd06387372 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin 95.37
cd06380382 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali 95.11
cd06390364 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin 94.9
cd06375 458 PBP1_mGluR_groupII Ligand binding domain of the gr 94.7
cd06381363 PBP1_iGluR_delta_like N-terminal leucine/isoleucin 93.7
cd06392400 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v 93.65
cd06376 463 PBP1_mGluR_groupIII Ligand-binding domain of the g 93.37
cd04509299 PBP1_ABC_transporter_GCPR_C_like Family C of G-pro 92.9
cd06388371 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin 92.87
cd06393384 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol 92.81
cd06389370 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin 92.78
cd06394333 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu 92.36
cd06363410 PBP1_Taste_receptor Ligand-binding domain of the T 91.52
cd06361403 PBP1_GPC6A_like Ligand-binding domain of the promi 90.69
cd06350348 PBP1_GPCR_family_C_like Ligand-binding domain of m 90.42
KOG1056|consensus 878 89.85
cd06364 510 PBP1_CaSR Ligand-binding domain of the CaSR calciu 87.22
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor Back     alignment and domain information
Probab=99.52  E-value=6.2e-14  Score=113.66  Aligned_cols=109  Identities=32%  Similarity=0.477  Sum_probs=84.8

Q ss_pred             ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCCCCCcccCCCCchhhHHHHHHHHHhhhhcccCC
Q psy8573           4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVRNERARKAYTALLTVTARTP   83 (123)
Q Consensus         4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~~~~W~~~~~~~~~d~~ar~Ay~svl~It~~~p   83 (123)
                      ..+||||+|++.+..|.||.+|+++|| ++++||||.+|++.+... ++.+|..++   ..|..++.|++++..|+...+
T Consensus       193 ~~~rvii~~~~~~~~~~ll~~A~~~gm-~~~~yv~i~~d~~~~~~~-~~~~w~~~~---~~~~~~~~a~~~~~~v~~~~~  267 (387)
T cd06386         193 ASERVVIMCAGADTIRSIMLAAHRRGL-TSGDYIFFNIELFNSSSY-GDGSWKRGD---KHDFEAKQAYSSLNTVTLLRT  267 (387)
T ss_pred             hcCcEEEEecCHHHHHHHHHHHHHcCC-CCCCEEEEEEeccccccc-CCCCCccCC---CcCHHHHHHHHhheEEeccCC
Confidence            445999999999999999999999999 689999999998863322 346797422   245567789999999998899


Q ss_pred             CChhHHHHHHHHHHhhccccCCCCCcccccccccc
Q psy8573          84 NNEAYRNFSSELLSAVLPILDHAKVASAKMPLLQN  118 (123)
Q Consensus        84 ~~~~y~~F~~~v~~~~~~~~~~~~~~~~~~p~~~~  118 (123)
                      .+++|++|.++++++++.+ +..-+..+++++.+.
T Consensus       268 ~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~aa~  301 (387)
T cd06386         268 VKPEFEKFSMEVKSSVEKA-GDLNDCDYVNMFVEG  301 (387)
T ss_pred             CChHHHHHHHHHHHHHHhC-CCCcccccchHHHHH
Confidence            8999999999999999876 322223455555443



Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.

>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor Back     alignment and domain information
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C Back     alignment and domain information
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor Back     alignment and domain information
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues Back     alignment and domain information
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family Back     alignment and domain information
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G Back     alignment and domain information
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [] Back     alignment and domain information
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases Back     alignment and domain information
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors Back     alignment and domain information
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) Back     alignment and domain information
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) Back     alignment and domain information
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors Back     alignment and domain information
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors Back     alignment and domain information
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor Back     alignment and domain information
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors Back     alignment and domain information
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors Back     alignment and domain information
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR) Back     alignment and domain information
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family Back     alignment and domain information
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor Back     alignment and domain information
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor Back     alignment and domain information
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor Back     alignment and domain information
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2 Back     alignment and domain information
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor Back     alignment and domain information
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor Back     alignment and domain information
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor Back     alignment and domain information
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor Back     alignment and domain information
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor Back     alignment and domain information
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor Back     alignment and domain information
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor Back     alignment and domain information
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>KOG1056|consensus Back     alignment and domain information
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query123
1yk1_A 479 Structure Of Natriuretic Peptide Receptor-C Complex 3e-09
1yk0_B 480 Structure Of Natriuretic Peptide Receptor-c Complex 3e-09
1jdn_A 441 Crystal Structure Of Hormone Receptor Length = 441 3e-09
1dp4_A 435 Dimerized Hormone Binding Domain Of The Atrial Natr 1e-06
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With Brain Natriuretic Peptide Length = 479 Back     alignment and structure

Iteration: 1

Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 5/95 (5%) Query: 5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAASLTPWYVHNDTDVR 64 S VV++CA+ T+R I+L A M SG+Y FFNIELF+S + + W D Sbjct: 253 SERVVIMCASSDTIRSIMLVAHRHGMT-SGDYAFFNIELFNSSSYGDGS-W---KRGDKH 307 Query: 65 NERARKAYTALLTVTARTPNNEAYRNFSSELLSAV 99 + A++AY++L TVT + FS E+ S+V Sbjct: 308 DFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSV 342
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor Length = 441 Back     alignment and structure
>pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic Peptide Receptor Length = 435 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query123
1dp4_A 435 Atrial natriuretic peptide receptor A; periplasmic 2e-11
1jdp_A 441 NPR-C, atrial natriuretic peptide clearance recept 5e-11
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435 Back     alignment and structure
 Score = 58.3 bits (140), Expect = 2e-11
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 8   VVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSS--MNAASLTPWYVHNDTDVRN 65
           V+ +C++P   R ++L A    +    +YVFF++++F     +A  L P       D ++
Sbjct: 209 VIYICSSPDAFRNLMLLALNAGL-TGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQD 267

Query: 66  ERARKAYTALLTVTARTPNNEAYRNFSSEL 95
             AR+A+ A   +T + P+N  Y  F  +L
Sbjct: 268 RSARQAFQAAKIITYKEPDNPEYLEFLKQL 297


>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query123
1dp4_A 435 Atrial natriuretic peptide receptor A; periplasmic 98.35
1jdp_A 441 NPR-C, atrial natriuretic peptide clearance recept 98.29
4f11_A 433 Gamma-aminobutyric acid type B receptor subunit 2; 97.44
4gpa_A 389 Glutamate receptor 4; PBP fold, ligand-gated ION c 97.11
3saj_A384 Glutamate receptor 1; rossman fold, ION channel, m 96.96
3o21_A 389 Glutamate receptor 3; periplasmatic binding protei 96.93
3qel_B364 Glutamate [NMDA] receptor subunit epsilon-2; ION c 96.52
3om0_A393 Glutamate receptor, ionotropic kainate 5; membrane 96.18
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 95.89
3hsy_A376 Glutamate receptor 2; ligand-gated ION channel, sy 95.85
3kg2_A 823 Glutamate receptor 2; ION channel, membrane protei 95.73
3h6g_A395 Glutamate receptor, ionotropic kainate 2; membrane 94.23
3ks9_A 496 Mglur1, metabotropic glutamate receptor 1; glutama 93.93
2e4u_A 555 Metabotropic glutamate receptor 3; G-protein-coupl 93.65
3mq4_A 481 Mglur7, metabotropic glutamate receptor 7; glutama 93.32
3sm9_A 479 Mglur3, metabotropic glutamate receptor 3; structu 93.17
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Back     alignment and structure
Probab=98.35  E-value=2.2e-06  Score=67.57  Aligned_cols=95  Identities=25%  Similarity=0.496  Sum_probs=71.6

Q ss_pred             cceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCC---CC--CCCcccCCCCchhhHHHHHHHHHhhhhc
Q psy8573           5 SVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNA---AS--LTPWYVHNDTDVRNERARKAYTALLTVT   79 (123)
Q Consensus         5 ~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~---~~--~~~W~~~~~~~~~d~~ar~Ay~svl~It   79 (123)
                      .+||||+|+..+..+.++.+|+++|| +.++|+||..+.+..+..   .+  ..+|... .  .....+.++++.+++++
T Consensus       206 ~~~viv~~~~~~~~~~~~~~a~~~g~-~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~-~--~~~~~~~~~~~~~~~~~  281 (435)
T 1dp4_A          206 KGRVIYICSSPDAFRNLMLLALNAGL-TGEDYVFFHLDVFGQSLKSAQGLVPQKPWERG-D--GQDRSARQAFQAAKIIT  281 (435)
T ss_dssp             HCSEEEEESCHHHHHHHHHHHHHTTC-CTTTCEEEEECTTCTTSCSSCTTSCBCTTCCS-S--SCHHHHHHHGGGEEEEE
T ss_pred             hCceEEEecChHHHHHHHHHHHHcCC-CCCCEEEEEEecccccccccccccccCCcccC-C--cchHHHHHHhheeEEEe
Confidence            57999999999999999999999998 677899999987654321   00  1356531 2  23446778888988888


Q ss_pred             ccCCCChhHHHHHHHHHHhhcccc
Q psy8573          80 ARTPNNEAYRNFSSELLSAVLPIL  103 (123)
Q Consensus        80 ~~~p~~~~y~~F~~~v~~~~~~~~  103 (123)
                      ...|.++.+++|.++.+++...++
T Consensus       282 ~~~~~~~~~~~f~~~~~~~~~~~~  305 (435)
T 1dp4_A          282 YKEPDNPEYLEFLKQLKLLADKKF  305 (435)
T ss_dssp             ECCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCChhHHHHHHHHHHHhcCCC
Confidence            877889999999999887765433



>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Back     alignment and structure
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Back     alignment and structure
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus} Back     alignment and structure
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Back     alignment and structure
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Back     alignment and structure
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Back     alignment and structure
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Back     alignment and structure
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Back     alignment and structure
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Back     alignment and structure
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Back     alignment and structure
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A* Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query123
d1dp4a_425 Hormone binding domain of the atrial natriuretic p 98.87
d1jdpa_401 Hormone binding domain of the atrial natriuretic p 98.57
d1ewka_ 477 Metabotropic glutamate receptor subtype 1 {Rat (Ra 96.57
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87  E-value=3.6e-09  Score=80.25  Aligned_cols=107  Identities=23%  Similarity=0.432  Sum_probs=86.1

Q ss_pred             ccceEEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeecccccCCCC-----CCCcccCCCCchhhHHHHHHHHHhhhh
Q psy8573           4 FSVAVVVLCANPQTVREILLAAEELNMIDSGEYVFFNIELFSSMNAAS-----LTPWYVHNDTDVRNERARKAYTALLTV   78 (123)
Q Consensus         4 ~~~RVVilC~~~~~~R~lmlaA~~~Gm~~~geYVFi~id~~~~s~~~~-----~~~W~~~~~~~~~d~~ar~Ay~svl~I   78 (123)
                      +..++||+++.+++.+.++.+|+++|| +.++||||..|.+.......     ..+|...   +..+..++.+++.++.+
T Consensus       205 ~~~~~vi~~~~~~~~~~~~~~a~~~g~-~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  280 (425)
T d1dp4a_         205 RKGRVIYICSSPDAFRNLMLLALNAGL-TGEDYVFFHLDVFGQSLKSAQGLVPQKPWERG---DGQDRSARQAFQAAKII  280 (425)
T ss_dssp             HHCSEEEEESCHHHHHHHHHHHHHTTC-CTTTCEEEEECTTCTTSCSSCTTSCBCTTCCS---SSCHHHHHHHGGGEEEE
T ss_pred             hcceeEEEecchhHHHHHHHHHHHhCC-CCCceEEEEecccccccccccccccccceeec---cchhhHHHHHHhheeee
Confidence            357899999999999999999999999 79999999999887554311     2456532   23556889999999999


Q ss_pred             cccCCCChhHHHHHHHHHHhhccccCCCCCcccccc
Q psy8573          79 TARTPNNEAYRNFSSELLSAVLPILDHAKVASAKMP  114 (123)
Q Consensus        79 t~~~p~~~~y~~F~~~v~~~~~~~~~~~~~~~~~~p  114 (123)
                      +...|.+++|.+|.++++.....+++.+......+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (425)
T d1dp4a_         281 TYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNI  316 (425)
T ss_dssp             EECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGGGH
T ss_pred             ccCCCCChHHHHHHHHHHHHhhccCCCCccccccch
Confidence            999999999999999999998888887665554443



>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure