Psyllid ID: psy8602

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL
Secondary Structure (PSIPRED)
ccEEEEEccccccEEEEEEccccccccccEEEEHHHHcEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccEEEEEcccccEEEEccccEEEEcHHHHcccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHEHHHHHccHHHHHHHHHcccccccccccEEEEHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEEccccEEEEcccEEEEccHHHHHHccHEEEEEEHccc
Coil and Loop (DISEMBL)
MNVILQAFSHVPLIRNFFLSTihkckldqyCFLCKIEALFNefyngnvepidltkyrsdycsededegvapyelnleDNRYELCSVIKHsglnidvgHYTTYISQhkrwflcddtkikpvgitdvlNSEAYMLVYEKKVL
Flexible Loop (DISEMBL)
MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL
Low Complexity Region (SEG)
MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL
Disordered region (IsUnstruct)
**VILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYE****
Disordered Region (DISOPRED)
*NVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDY******************NRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL
Disordered Region (DISEMBL)
MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL
Disordered Region (DISPRO)
MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSD****************LEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
A6H8I0	506	Ubiquitin carboxyl-termin	yes	N/A	0.442	0.122	0.515	1e-11
P0C8Z3	514	Ubiquitin carboxyl-termin	yes	N/A	0.442	0.120	0.5	2e-11
Q5DU02	525	Ubiquitin carboxyl-termin	yes	N/A	0.614	0.163	0.4	3e-11
Q9UPT9	525	Ubiquitin carboxyl-termin	yes	N/A	0.442	0.118	0.5	3e-11
Q6GNI6	523	Ubiquitin carboxyl-termin	N/A	N/A	0.442	0.118	0.5	3e-11
Q70EK9	711	Ubiquitin carboxyl-termin	no	N/A	0.635	0.125	0.384	5e-11
Q6DCJ1	523	Ubiquitin carboxyl-termin	N/A	N/A	0.442	0.118	0.484	7e-11
A6NNY8	438	Ubiquitin carboxyl-termin	no	N/A	0.492	0.157	0.450	8e-11
Q8CEG8	438	Ubiquitin carboxyl-termin	no	N/A	0.442	0.141	0.468	2e-10
Q09738	449	Probable ubiquitin carbox	yes	N/A	0.485	0.151	0.457	7e-09

>sp|A6H8I0|UBP22_DANRE Ubiquitin carboxyl-terminal hydrolase 22 OS=Danio rerio GN=usp22 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYTT+I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 441 DNKYSLFAVVNHQG-TLESGHYTTFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYH 499

Query: 137 KKVL 140
           K+ L
Sbjct: 500 KQFL 503

Histone deubiquitinating component of the transcription regulatory histone acetylation (HAT) complex SAGA. Catalyzes the deubiquitination of both histones H2A and H2B, thereby acting as a coactivator. Recruited to specific gene promoters by activators, where it is required for transcription.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|P0C8Z3|UBP22_BOVIN Ubiquitin carboxyl-terminal hydrolase 22 OS=Bos taurus GN=USP22 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 449 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIADVLDSEGYLLFYH 507

Query: 137 KKVL 140
           K+ L
Sbjct: 508 KQFL 511

Histone deubiquitinating component of the transcription regulatory histone acetylation (HAT) complex SAGA. Catalyzes the deubiquitination of both histones H2A and H2B, thereby acting as a coactivator. Recruited to specific gene promoters by activators such as MYC, where it is required for transcription. Required for nuclear receptor-mediated transactivation and cell cycle progression.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5DU02|UBP22_MOUSE Ubiquitin carboxyl-terminal hydrolase 22 OS=Mus musculus GN=Usp22 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 9/95 (9%)

Query: 51  IDLTKYRSDYCSEDEDEGVAPYELNLE----DNRYELCSVIKHSGLNIDVGHYTTYISQH 106
           +D+T + +   S  E      Y+  L+    DN+Y L +V+ H G  ++ GHYT++I QH
Sbjct: 432 LDMTPFMA---SSKESRMNGQYQQPLDSLNNDNKYSLFAVVNHQG-TLESGHYTSFIRQH 487

Query: 107 K-RWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL 140
           K +WF CDD  I    I DVL+SE Y+L Y K+ L
Sbjct: 488 KDQWFKCDDAIITKASIKDVLDSEGYLLFYHKQFL 522

Histone deubiquitinating component of the transcription regulatory histone acetylation (HAT) complex SAGA. Catalyzes the deubiquitination of both histones H2A and H2B, thereby acting as a coactivator. Recruited to specific gene promoters by activators such as MYC, where it is required for transcription. Required for nuclear receptor-mediated transactivation and cell cycle progression.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9UPT9|UBP22_HUMAN Ubiquitin carboxyl-terminal hydrolase 22 OS=Homo sapiens GN=USP22 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 460 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYH 518

Query: 137 KKVL 140
           K+ L
Sbjct: 519 KQFL 522

Histone deubiquitinating component of the transcription regulatory histone acetylation (HAT) complex SAGA. Catalyzes the deubiquitination of both histones H2A and H2B, thereby acting as a coactivator. Recruited to specific gene promoters by activators such as MYC, where it is required for transcription. Required for nuclear receptor-mediated transactivation and cell cycle progression.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6GNI6|UB22A_XENLA Ubiquitin carboxyl-terminal hydrolase 22-A OS=Xenopus laevis GN=usp22-a PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 458 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYH 516

Query: 137 KKVL 140
           K+ L
Sbjct: 517 KQFL 520

Histone deubiquitinating component of the transcription regulatory histone acetylation (HAT) complex SAGA. Catalyzes the deubiquitination of both histones H2A and H2B, thereby acting as a coactivator. Recruited to specific gene promoters by activators, where it is required for transcription.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo sapiens GN=USP51 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 51  IDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RW 109
           +D+T + +        EG  P +    +N+Y L +VI H G  ++ GHYT++I Q K +W
Sbjct: 619 LDMTPFLASTKESRMKEGQPPTDCVPNENKYSLFAVINHHG-TLESGHYTSFIRQQKDQW 677

Query: 110 FLCDDTKIKPVGITDVLNSEAYMLVYEKKVL 140
           F CDD  I    I D+L SE Y+L Y K+ L
Sbjct: 678 FSCDDAIITKATIEDLLYSEGYLLFYHKQGL 708

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6DCJ1|UB22B_XENLA Ubiquitin carboxyl-terminal hydrolase 22-B OS=Xenopus laevis GN=usp22-b PE=2 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DV++SE Y+L Y 
Sbjct: 458 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVIDSEGYLLFYH 516

Query: 137 KKVL 140
           K+ L
Sbjct: 517 KQFL 520

Histone deubiquitinating component of the transcription regulatory histone acetylation (HAT) complex SAGA. Catalyzes the deubiquitination of both histones H2A and H2B, thereby acting as a coactivator. Recruited to specific gene promoters by activators, where it is required for transcription.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|A6NNY8|UBP27_HUMAN Ubiquitin carboxyl-terminal hydrolase 27 OS=Homo sapiens GN=USP27X PE=2 SV=3

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 71  PYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSE 129
           P      +N+Y L +V+ H G  ++ GHYT++I  HK +WF CDD  I    I DVL+SE
Sbjct: 354 PTNSGNNENKYSLFAVVNHQG-TLESGHYTSFIRHHKDQWFKCDDAVITKASIKDVLDSE 412

Query: 130 AYMLVYEKKVL 140
            Y+L Y K+VL
Sbjct: 413 GYLLFYHKQVL 423

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8CEG8|UBP27_MOUSE Ubiquitin carboxyl-terminal hydrolase 27 OS=Mus musculus GN=Usp27 PE=2 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           +N+Y L +V+ H G  ++ GHYT++I  H+ +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 361 ENKYSLFAVVNHQG-TLESGHYTSFIRHHRDQWFKCDDAVITKASIKDVLDSEGYLLFYH 419

Query: 137 KKVL 140
           K+VL
Sbjct: 420 KQVL 423

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q09738|UBP8_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp8 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 72  YELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAY 131
           Y  N +D  Y+L SV+ H G  +D GHY  Y     +WFL DDT I  V  ++VLNS+AY
Sbjct: 370 YNFNQDDVDYQLYSVVCHKG-TLDTGHYIAYTYYQNQWFLLDDTTIVEVKESEVLNSQAY 428

Query: 132 MLVY-EKKVL 140
           +L Y E+++L
Sbjct: 429 LLFYHERQIL 438

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
241238064	587	ubiquitin-specific protease, putative [I	0.892	0.212	0.343	5e-11
357626409	487	putative Ubiquitin carboxyl-terminal hyd	0.857	0.246	0.371	9e-11
395856749	725	PREDICTED: LOW QUALITY PROTEIN: ubiquiti	0.442	0.085	0.5	1e-10
395748703	746	PREDICTED: ubiquitin carboxyl-terminal h	0.442	0.083	0.5	1e-10
390481017	697	PREDICTED: LOW QUALITY PROTEIN: ubiquiti	0.442	0.088	0.5	1e-10
326929002	758	PREDICTED: ubiquitin carboxyl-terminal h	0.442	0.081	0.5	1e-10
297272148	660	PREDICTED: ubiquitin carboxyl-terminal h	0.442	0.093	0.5	2e-10
334333006	880	PREDICTED: ubiquitin carboxyl-terminal h	0.442	0.070	0.5	2e-10
426238935	606	PREDICTED: ubiquitin carboxyl-terminal h	0.442	0.102	0.5	2e-10
444525392	479	Ubiquitin carboxyl-terminal hydrolase 22	0.442	0.129	0.5	3e-10

>gi|241238064|ref|XP_002401245.1| ubiquitin-specific protease, putative [Ixodes scapularis] gi|215496141|gb|EEC05782.1| ubiquitin-specific protease, putative [Ixodes scapularis]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 6/131 (4%)

Query: 11  VPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVA 70
           +P++ +F L      +     F  KI +L +     ++ P   +  R+        EG  
Sbjct: 333 LPVVCSFHLKRFEHSR----SFHKKISSLISFPQYLDMSPFMSSSPRAPEAVAQAPEGAQ 388

Query: 71  PYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSE 129
                  DN+Y L +V+ HSG  I+ GHYT YI QH+ RWF CDD  I    + DVL+SE
Sbjct: 389 EPSRPCHDNKYCLFAVVNHSG-TIETGHYTAYIRQHRDRWFKCDDHLITRASLQDVLDSE 447

Query: 130 AYMLVYEKKVL 140
            Y+L Y K++L
Sbjct: 448 GYLLFYHKQIL 458

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626409|gb|EHJ76510.1| putative Ubiquitin carboxyl-terminal hydrolase 22 [Danaus plexippus]

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 12/132 (9%)

Query: 11  VPLIRNFFLSTI-HKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGV 69
           +P++ +F L    H  ++D+     KI A  +     ++ P   T  R+    E  D   
Sbjct: 358 LPIVASFHLKRFEHSSQIDR-----KISAFVSFPAELDMTPFMSTHRRA---VEAADNNN 409

Query: 70  APYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNS 128
           AP E   EDNRY L +V+ H G ++D GHYT Y+ Q K  WF CDD  I    + +VL+S
Sbjct: 410 AP-EGVFEDNRYSLFAVVNHLG-SLDAGHYTAYVRQMKGSWFKCDDHMITRASLREVLDS 467

Query: 129 EAYMLVYEKKVL 140
           E Y+L Y K VL
Sbjct: 468 EGYLLFYHKTVL 479

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395856749|ref|XP_003800781.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 22 [Otolemur garnettii]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 660 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYH 718

Query: 137 KKVL 140
           K+ L
Sbjct: 719 KQFL 722

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395748703|ref|XP_002827183.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Pongo abelii]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 681 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYH 739

Query: 137 KKVL 140
           K+ L
Sbjct: 740 KQFL 743

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390481017|ref|XP_003736056.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 22-like [Callithrix jacchus]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 632 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYH 690

Query: 137 KKVL 140
           K+ L
Sbjct: 691 KQFL 694

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326929002|ref|XP_003210661.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-A-like [Meleagris gallopavo]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 693 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYH 751

Query: 137 KKVL 140
           K+ L
Sbjct: 752 KQFL 755

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297272148|ref|XP_001100993.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Macaca mulatta]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 595 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYH 653

Query: 137 KKVL 140
           K+ L
Sbjct: 654 KQFL 657

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334333006|ref|XP_001370855.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-A-like [Monodelphis domestica]

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 815 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYH 873

Query: 137 KKVL 140
           K+ L
Sbjct: 874 KQFL 877

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426238935|ref|XP_004013392.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Ovis aries]

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 541 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIADVLDSEGYLLFYH 599

Query: 137 KKVL 140
           K+ L
Sbjct: 600 KQFL 603

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444525392|gb|ELV13999.1| Ubiquitin carboxyl-terminal hydrolase 22, partial [Tupaia chinensis]

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+L Y 
Sbjct: 414 DNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYH 472

Query: 137 KKVL 140
           K+ L
Sbjct: 473 KQFL 476

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
ZFIN|ZDB-GENE-060512-211	506	usp22 "ubiquitin specific pept	0.464	0.128	0.514	3.5e-25
UNIPROTKB|F1NG36	483	USP22 "Ubiquitin carboxyl-term	0.464	0.134	0.5	1e-24
UNIPROTKB|F1MTL6	438	USP27X "Ubiquitin carboxyl-ter	0.628	0.200	0.387	1.4e-24
UNIPROTKB|F1PLI6	471	USP22 "Ubiquitin carboxyl-term	0.464	0.138	0.5	1.5e-24
UNIPROTKB|P0C8Z3	514	USP22 "Ubiquitin carboxyl-term	0.464	0.126	0.5	1.6e-24
UNIPROTKB|Q9UPT9	525	USP22 "Ubiquitin carboxyl-term	0.464	0.123	0.5	2.2e-24
MGI|MGI:2144157	525	Usp22 "ubiquitin specific pept	0.464	0.123	0.5	2.2e-24
RGD|1310354	525	Usp22 "ubiquitin specific pept	0.464	0.123	0.5	2.2e-24
UNIPROTKB|A6NNY8	438	USP27X "Ubiquitin carboxyl-ter	0.628	0.200	0.387	2.4e-24
UNIPROTKB|F1PHD5	514	USP51 "Ubiquitin carboxyl-term	0.628	0.171	0.387	2.7e-24

ZFIN|ZDB-GENE-060512-211 usp22 "ubiquitin specific peptidase 22" [Danio rerio (taxid:7955)]

 Score = 176 (67.0 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
 Identities = 35/68 (51%), Positives = 45/68 (66%)

Query:    74 LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYM 132
             LN  DN+Y L +V+ H G  ++ GHYTT+I QHK +WF CDD  I    I DVL+SE Y+
Sbjct:   438 LN-NDNKYSLFAVVNHQG-TLESGHYTTFIRQHKDQWFKCDDAIITKASIKDVLDSEGYL 495

Query:   133 LVYEKKVL 140
             L Y K+ L
Sbjct:   496 LFYHKQFL 503

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|F1NG36 USP22 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
 Identities = 34/68 (50%), Positives = 45/68 (66%)

Query:    74 LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYM 132
             LN  DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+
Sbjct:   415 LN-NDNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYL 472

Query:   133 LVYEKKVL 140
             L Y K+ L
Sbjct:   473 LFYHKQFL 480

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1MTL6 USP27X "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
 Identities = 36/93 (38%), Positives = 53/93 (56%)

Query:    51 IDLTKYRSDYCSEDEDEGVAPYELNL--EDNRYELCSVIKHSGLNIDVGHYTTYISQHK- 107
             +D+T + +    E    G      N   ++N+Y L +V+ H G  ++ GHYT++I  HK 
Sbjct:   333 LDMTPFMAS-SKESRMNGQLQLPTNSGNDENKYSLFAVVNHQG-TLESGHYTSFIRHHKD 390

Query:   108 RWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL 140
             +WF CDD  I    I DVL+SE Y+L Y K+VL
Sbjct:   391 QWFKCDDAVITKASIKDVLDSEGYLLFYHKQVL 423

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|F1PLI6 USP22 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]

 Score = 172 (65.6 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 34/68 (50%), Positives = 45/68 (66%)

Query:    74 LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYM 132
             LN  DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+
Sbjct:   403 LN-NDNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIEDVLDSEGYL 460

Query:   133 LVYEKKVL 140
             L Y K+ L
Sbjct:   461 LFYHKQFL 468

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0016578 "histone deubiquitination" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IEA

GO:0010485 "H4 histone acetyltransferase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0000124 "SAGA complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|P0C8Z3 USP22 "Ubiquitin carboxyl-terminal hydrolase 22" [Bos taurus (taxid:9913)]

 Score = 173 (66.0 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
 Identities = 34/68 (50%), Positives = 45/68 (66%)

Query:    74 LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYM 132
             LN  DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+
Sbjct:   446 LN-NDNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIADVLDSEGYL 503

Query:   133 LVYEKKVL 140
             L Y K+ L
Sbjct:   504 LFYHKQFL 511

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0016578 "histone deubiquitination" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IEA

GO:0010485 "H4 histone acetyltransferase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0000124 "SAGA complex" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|Q9UPT9 USP22 "Ubiquitin carboxyl-terminal hydrolase 22" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
 Identities = 34/68 (50%), Positives = 45/68 (66%)

Query:    74 LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYM 132
             LN  DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+
Sbjct:   457 LN-NDNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYL 514

Query:   133 LVYEKKVL 140
             L Y K+ L
Sbjct:   515 LFYHKQFL 522

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IMP

GO:0000124 "SAGA complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0004843 "ubiquitin-specific protease activity" evidence=IMP;IDA

GO:0009790 "embryo development" evidence=NAS

GO:0016579 "protein deubiquitination" evidence=IDA

GO:0016574 "histone ubiquitination" evidence=IDA

GO:0016578 "histone deubiquitination" evidence=IDA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IMP

GO:0010485 "H4 histone acetyltransferase activity" evidence=IDA

GO:0070461 "SAGA-type complex" evidence=IDA

GO:0043967 "histone H4 acetylation" evidence=IDA

MGI|MGI:2144157 Usp22 "ubiquitin specific peptidase 22" [Mus musculus (taxid:10090)]

 Score = 172 (65.6 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
 Identities = 34/68 (50%), Positives = 45/68 (66%)

Query:    74 LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYM 132
             LN  DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+
Sbjct:   457 LN-NDNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYL 514

Query:   133 LVYEKKVL 140
             L Y K+ L
Sbjct:   515 LFYHKQFL 522

GO:0000124 "SAGA complex" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IC

GO:0007049 "cell cycle" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=ISO

GO:0016578 "histone deubiquitination" evidence=ISO

GO:0016579 "protein deubiquitination" evidence=ISO;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=ISO

GO:0043967 "histone H4 acetylation" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045931 "positive regulation of mitotic cell cycle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|1310354 Usp22 "ubiquitin specific peptidase 22" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
 Identities = 34/68 (50%), Positives = 45/68 (66%)

Query:    74 LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYM 132
             LN  DN+Y L +V+ H G  ++ GHYT++I QHK +WF CDD  I    I DVL+SE Y+
Sbjct:   457 LN-NDNKYSLFAVVNHQG-TLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYL 514

Query:   133 LVYEKKVL 140
             L Y K+ L
Sbjct:   515 LFYHKQFL 522

GO:0000124 "SAGA complex" evidence=IEA;ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010485 "H4 histone acetyltransferase activity" evidence=IEA;ISO

GO:0016574 "histone ubiquitination" evidence=IEA;ISO

GO:0016578 "histone deubiquitination" evidence=IEA;ISO

GO:0016579 "protein deubiquitination" evidence=ISO

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA;ISO

GO:0043967 "histone H4 acetylation" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA;ISO

GO:0070461 "SAGA-type complex" evidence=ISO

UNIPROTKB|A6NNY8 USP27X "Ubiquitin carboxyl-terminal hydrolase 27" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 36/93 (38%), Positives = 52/93 (55%)

Query:    51 IDLTKYRSDYCSEDEDEGVAPYELNL--EDNRYELCSVIKHSGLNIDVGHYTTYISQHK- 107
             +D+T + +    E    G      N    +N+Y L +V+ H G  ++ GHYT++I  HK 
Sbjct:   333 LDMTPFMAS-SKESRMNGQLQLPTNSGNNENKYSLFAVVNHQG-TLESGHYTSFIRHHKD 390

Query:   108 RWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL 140
             +WF CDD  I    I DVL+SE Y+L Y K+VL
Sbjct:   391 QWFKCDDAVITKASIKDVLDSEGYLLFYHKQVL 423

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1PHD5 USP51 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]

 Score = 171 (65.3 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
 Identities = 36/93 (38%), Positives = 53/93 (56%)

Query:    51 IDLTKYRSDYCSEDEDEGVAPYELNL--EDNRYELCSVIKHSGLNIDVGHYTTYISQHK- 107
             +D+T + +    E    G      N   ++N+Y L +V+ H G  ++ GHYT++I  HK 
Sbjct:   410 LDMTPFMAS-SKESRMNGQLQLPTNSGNDENKYSLFAVVNHQG-TLESGHYTSFIRHHKD 467

Query:   108 RWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL 140
             +WF CDD  I    I DVL+SE Y+L Y K+VL
Sbjct:   468 QWFKCDDAVITKASIKDVLDSEGYLLFYHKQVL 500

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A6H8I0	UBP22_DANRE	3, ., 4, ., 1, 9, ., 1, 2	0.5156	0.4428	0.1225	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	140
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	5e-16
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	3e-15
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	1e-14
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	3e-13
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	1e-12
cd02667	279	cd02667, Peptidase_C19K, A subfamily of Peptidase	3e-09
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	5e-09
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	1e-08
cd02671	332	cd02671, Peptidase_C19O, A subfamily of Peptidase	1e-08
cd02663	300	cd02663, Peptidase_C19G, A subfamily of Peptidase	6e-08
cd02662	240	cd02662, Peptidase_C19F, A subfamily of Peptidase	1e-07
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	1e-06
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	2e-06
cd02673	245	cd02673, Peptidase_C19Q, A subfamily of Peptidase	9e-06
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	2e-05
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	2e-04
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	2e-04
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	3e-04
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	6e-04
cd02669	440	cd02669, Peptidase_C19M, A subfamily of Peptidase	0.002

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 71.7 bits (176), Expect = 5e-16
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 15/93 (16%)

Query: 51  IDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYI--SQHKR 108
           +DL+ Y S+   + + +            +YEL +V+ HSG + D GHY  Y+      +
Sbjct: 171 LDLSPYLSEGEKDSDSDN--------GSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGK 222

Query: 109 WFLCDDTKIKPVGITDVL-----NSEAYMLVYE 136
           W+  +D K+  V   +VL     +S AY+L YE
Sbjct: 223 WYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 70.1 bits (172), Expect = 3e-15
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 58  SDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTK 116
           + Y S    +      L+  D  Y+L +V+ H G  +D GHYT Y  Q   +WF  DD  
Sbjct: 251 TPYTSSSIGDTQDSNSLD-PDYTYDLFAVVVHKG-TLDTGHYTAYCRQGDGQWFKFDDAM 308

Query: 117 IKPVGITDVLNSEAYMLVY 135
           I  V   +VL S+AY+L Y
Sbjct: 309 ITRVSEEEVLKSQAYLLFY 327

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 13/89 (14%)

Query: 49  EPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQ--H 106
             +DL+ Y  +    +E              +YEL +V+ HSG ++  GHY  YI +   
Sbjct: 236 LELDLSSYLEEELEGEEPPT-----------KYELVAVVVHSGSSLSGGHYIAYIKKREK 284

Query: 107 KRWFLCDDTKIKPVGITDVLNSEAYMLVY 135
            +W   DD K+  V   +VL S AY+L Y
Sbjct: 285 NKWVKFDDEKVSVVTEEEVLRSSAYILFY 313

Length = 313

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 70  APYELNLEDN--RYELCSVIKHSGLNIDVGHYTTYI-SQHKRWFLCDDTKIKPVGITDVL 126
           +PY     D   +Y+L +V+ HSG +   GHY  Y+ S + +W+  DD+K+ PV I  VL
Sbjct: 235 SPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVL 294

Query: 127 NSEAYMLVY 135
           + +AY+L Y
Sbjct: 295 SQKAYILFY 303

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 77  EDNRYELCSVIKHSGLNIDVGHYTTY--ISQHKRWFLCDDTKIKPVGITDVLNSEAYMLV 134
              +Y+L +V+ H G +++ GHYT Y   ++   W+  DD+++  V  + V++S AY+L 
Sbjct: 170 GPFKYDLYAVVNHYG-SLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILF 228

Query: 135 YE 136
           YE
Sbjct: 229 YE 230

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 33/111 (29%)

Query: 49  EPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK- 107
           E +DL  +    C+  ED+             Y L  V++HSG  +  GHY  Y+     
Sbjct: 179 EILDLAPFCDPKCNSSEDK---------SSVLYRLYGVVEHSGT-MRSGHYVAYVKVRPP 228

Query: 108 ----------------------RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
                                 +W+   D+ ++ V + +VL SEAY+L YE
Sbjct: 229 QQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 279

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 28/112 (25%)

Query: 51  IDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQ--HKR 108
           +D+  Y          +     + + E   YEL  V+ HSG +   GHY +YI      +
Sbjct: 225 LDMEPYTEKG---LAKKEGDSEKKDSESYIYELHGVLVHSG-DAHGGHYYSYIKDRDDGK 280

Query: 109 WFLCDDTKIKPVGITDVL----------------------NSEAYMLVYEKK 138
           W+  +D  + P    D                         + AYML YE+K
Sbjct: 281 WYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERK 332

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 1  MNVILQAFSHVPLIRNFFLSTIHKCKLD----QYCFLCKIEALFNEF-YNGNVEP 50
          MNVILQA  H PL+RN+FLS  H C         C  C ++ +F EF Y+G+  P
Sbjct: 12 MNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSP 66

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 81  YELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNS 128
           Y L +V+ HSG  I  GHYT Y+    RW L DD+++K     D L +
Sbjct: 272 YRLFAVVMHSGATISSGHYTAYV----RWLLFDDSEVKVTEEKDFLEA 315

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 332

>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 17/85 (20%)

Query: 69  VAPYELNL---------EDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKP 119
           V P EL L          D  YEL +V+ H G   + GHY + +  H  W L DD  ++ 
Sbjct: 216 VFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEK 275

Query: 120 VGITDVLN--------SEAYMLVYE 136
           +    V          + AY+L Y+
Sbjct: 276 IDENAVEEFFGDSPNQATAYVLFYQ 300

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300

>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 24/84 (28%)

Query: 76  LEDNRYELCSVIKHSGLNIDVGHYTTY----------------------ISQHKRWFLCD 113
           L    Y L +V+ H G +   GHY  Y                       S    W+   
Sbjct: 158 LPKVLYRLRAVVVHYGSH-SSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRIS 216

Query: 114 DTKIKPVGITDVL-NSEAYMLVYE 136
           DT +K V  ++VL    AYML YE
Sbjct: 217 DTTVKEVSESEVLEQKSAYMLFYE 240

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 240

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 81  YELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGITDVLNSE-------AY 131
           YEL +VI H G + D GHY  ++      +W   DD K+  V   D+L          AY
Sbjct: 241 YELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAY 300

Query: 132 MLVYE 136
           +L+Y+
Sbjct: 301 ILLYK 305

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 81  YELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK 138
           Y+L +V  H G  +  GHYT Y     +  W+L DD++I  V   D + S AY+L Y +K
Sbjct: 764 YDLYAVDNHYGG-LSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRK 822

Length = 823

>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19

 Score = 43.3 bits (102), Expect = 9e-06
 Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 21/138 (15%)

Query: 13  LIRNFFLSTIHKCKLDQYCFLCKIE--------ALFNEFYNGNVEPIDLTKYRSDYCSED 64
           LI NF   +     +++ C  CK E          F E  + N++   L    SDY  ++
Sbjct: 115 LISNFKTWS----PIEKDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKKN 170

Query: 65  EDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTY---ISQHKRWFLCDDTKIKPVG 121
           E E +  Y     D +Y L +VI H G +   GHY  Y   +     W  C D +I+PV 
Sbjct: 171 E-EIMKKYCG--TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVS 227

Query: 122 ITDVLN---SEAYMLVYE 136
             DV     S  Y++ Y+
Sbjct: 228 KNDVSTNARSSGYLIFYD 245

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 245

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 51  IDLTKYRS-DYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRW 109
           ID  +        E     +    +     +Y L  V+ H+G  ++ GHY + + +   W
Sbjct: 326 IDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNG-TLNGGHYFSEVKRSGTW 384

Query: 110 FLCDDTKIKPVG-ITDVLNSEAYMLVYEK 137
            + DD++++     T   +  +Y+L Y +
Sbjct: 385 NVYDDSQVRKGSRTTSGSHPSSYILFYTR 413

Length = 415

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 80  RYELCSVIKHSGLNIDVGHYTTYISQ----HKRWFLCDDTKIKPVGITDVLNSEAYMLVY 135
           +YEL + I H G ++  GHY  +I +      +W L +D K+        +    Y+  Y
Sbjct: 251 KYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFY 310

Query: 136 E 136
           +
Sbjct: 311 Q 311

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 25/85 (29%)

Query: 78  DNRYELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLN-------- 127
           D  Y L  V+ HSG ++  GHY   +   K  RW+  DDT++      +VL         
Sbjct: 428 DAVYVLYGVLVHSG-DLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHP 486

Query: 128 --------------SEAYMLVYEKK 138
                           AYMLVY +K
Sbjct: 487 YKDKIRDHSGIKRFMSAYMLVYLRK 511

Length = 1089

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 16/99 (16%)

Query: 55  KYRSDYCSEDEDEGVAPYELNLEDNR------------YELCSVIKHSGLNIDVGHYTTY 102
           K R  +C  D+D      E+  E+ +            Y L +VI H G +I  GHY  +
Sbjct: 650 KRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWF 709

Query: 103 I----SQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEK 137
           I        +W L +D K       +VL    Y+ ++++
Sbjct: 710 IRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748

Length = 749

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 23/87 (26%)

Query: 73  ELNLEDNRYELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGITDVL---- 126
           E +     YEL  V+ H G++   GHY  +I   Q   W+  +D  ++ +    +     
Sbjct: 238 ESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNS 297

Query: 127 -----------------NSEAYMLVYE 136
                            +  AYMLVY+
Sbjct: 298 EDPAKPRKSEIKKGTHSSRTAYMLVYK 324

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 14/19 (73%), Positives = 15/19 (78%)

Query: 2   NVILQAFSHVPLIRNFFLS 20
           NVI+QA SHV  IRNFFL 
Sbjct: 132 NVIIQALSHVKPIRNFFLL 150

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 440

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
KOG1865|consensus	545		99.97
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	99.95
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	99.95
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	99.95
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.94
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	99.94
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.93
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	99.93
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.93
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.93
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	99.93
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.92
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.92
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	99.92
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	99.92
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.91
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.91
KOG1870|consensus	842		99.91
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	99.91
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.9
KOG1868|consensus	653		99.9
KOG1866|consensus	944		99.89
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	99.88
KOG1867|consensus	492		99.86
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	99.86
KOG1873|consensus	877		99.85
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	99.84
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.79
KOG1864|consensus	587		99.78
KOG4598|consensus	1203		99.76
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	99.58
KOG0944|consensus	763		99.41
KOG1872|consensus	473		99.27
KOG1863|consensus	1093		99.26
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.23
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.22
KOG1871|consensus	420		99.21
KOG2026|consensus	442		98.41
KOG1275|consensus	1118		98.19
KOG1865|consensus	545		97.84
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	96.8
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	96.73
PF15499	275	Peptidase_C98: Ubiquitin-specific peptidase-like,	96.39
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	96.07
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	96.01
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	95.92
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	95.75
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	95.13
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	94.64
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	94.41
PF05408	193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	94.38
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	94.36
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	93.73
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	91.98
KOG1867|consensus	492		89.91
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	89.58
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	86.55
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	85.57

>KOG1865|consensus

Probab=99.97  E-value=5.4e-31  Score=207.01  Aligned_cols=130  Identities=25%  Similarity=0.424  Sum_probs=115.2

Q ss_pred             cCcHHHHHHhhcccccCccccCcccchhh----hhhhhhhcCCccccccccccc-------cCCCCCCCCCccccccC--
Q psy8602           9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIE----ALFNEFYNGNVEPIDLTKYRS-------DYCSEDEDEGVAPYELN--   75 (140)
Q Consensus         9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~----~~f~~~~~~~~~~l~l~rf~~-------~~~~~~~~~~~~~~~~~--   75 (140)
                      +....|..|...|++..++.+.|..|+..    +++.....|+|++|+||||..       +....++.+|+.||+.+  
T Consensus       267 sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~~gKI~K~I~fPE~LDl~PyMS~~~  346 (545)
T KOG1865|consen  267 SLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGTGGKISKPVSFPETLDLQPYMSQPN  346 (545)
T ss_pred             hHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhccCcccccccccCCcccccccccccCCC
Confidence            44577899999999988888999999984    346666889999999999954       34567888999999985  


Q ss_pred             CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC-cEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602          76 LEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYEKK  138 (140)
Q Consensus        76 ~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~-~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~  138 (140)
                      ..+..|.|||||+|.|.+..+|||++|||..+ .||.+||+.|+.++.+.|++.+||||||.|+
T Consensus       347 e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~  410 (545)
T KOG1865|consen  347 EGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK  410 (545)
T ss_pred             CCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceecccceEEEEEee
Confidence            46789999999999999999999999999998 9999999999999999999999999999986

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.5e-29  Score=197.82  Aligned_cols=134  Identities=25%  Similarity=0.389  Sum_probs=115.7

Q ss_pred             hhhhcCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCCCCCCCccccccCC----
Q psy8602           5 LQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNL----   76 (140)
Q Consensus         5 lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~~~~~~~~~~~~~~----   76 (140)
                      ...++...||..|..+|.+.-+.-|+|+.|+..+    ++..+..|.+++||||||......++|+.++..|++..    
T Consensus       672 ~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs  751 (823)
T COG5560         672 ERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLS  751 (823)
T ss_pred             cCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhcccccccccc
Confidence            3567778889999888888766669999999743    45556788899999999998888888888888776542    


Q ss_pred             --------CCCcEEEEEEEEeecCCCCCCeEEEEEeC--CCcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602          77 --------EDNRYELCSVIKHSGLNIDVGHYTTYISQ--HKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV  139 (140)
Q Consensus        77 --------~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~--~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~  139 (140)
                              +...|+|+||=+|.| .+++||||||+|+  +++||+|||++|+++.+++...++||+|||+|++
T Consensus       752 ~~~~~~~~p~liydlyavDNHyg-glsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyrrk~  823 (823)
T COG5560         752 GVEYMVDDPRLIYDLYAVDNHYG-GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS  823 (823)
T ss_pred             ceEEeecCcceEEEeeecccccc-ccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEEEecC
Confidence                    347899999999999 9999999999999  4599999999999999999999999999999974

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=99.95  E-value=1.4e-28  Score=184.47  Aligned_cols=128  Identities=27%  Similarity=0.420  Sum_probs=102.9

Q ss_pred             hcCcHHHHHHhhcccccCccccCcccchhh-hhhhhhhcCCccccccccccccCC----------CCCCCCCccccccC-
Q psy8602           8 FSHVPLIRNFFLSTIHKCKLDQYCFLCKIE-ALFNEFYNGNVEPIDLTKYRSDYC----------SEDEDEGVAPYELN-   75 (140)
Q Consensus         8 l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~-~~f~~~~~~~~~~l~l~rf~~~~~----------~~~~~~~~~~~~~~-   75 (140)
                      .+...+|..|+..+.+..++.|.|..|+.. +.......|++++|+|+||..+..          ..++.+++.++... 
T Consensus       111 ~sL~~~L~~~~~~E~l~~~~~~~C~~C~~a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~  190 (279)
T cd02667         111 CSIESCLKQFTEVEILEGNNKFACENCTKAKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDPK  190 (279)
T ss_pred             CCHHHHHHhhcCeeEecCCCcccCCccCceeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhccCcc
Confidence            345567888888888877777999999863 334445678899999999976642          22345566666543 


Q ss_pred             ------CCCCcEEEEEEEEeecCCCCCCeEEEEEeC-----------------------CCcEEEEcCCeeEEecccccc
Q psy8602          76 ------LEDNRYELCSVIKHSGLNIDVGHYTTYISQ-----------------------HKRWFLCDDTKIKPVGITDVL  126 (140)
Q Consensus        76 ------~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-----------------------~~~W~~~~D~~v~~~~~~~v~  126 (140)
                            ..+..|+|+|||+|.| +.++|||+||+|.                       .+.||.|||+.|++++.+++.
T Consensus       191 ~~~~~~~~~~~Y~L~~vi~H~G-~~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~  269 (279)
T cd02667         191 CNSSEDKSSVLYRLYGVVEHSG-TMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVL  269 (279)
T ss_pred             ccccccCCCceEEEEEEEEEeC-CCCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhc
Confidence                  2467999999999999 6699999999998                       349999999999999999999


Q ss_pred             CCCcEEEEEE
Q psy8602         127 NSEAYMLVYE  136 (140)
Q Consensus       127 ~~~aYiLfY~  136 (140)
                      +.+||||||+
T Consensus       270 ~~~aYiLfYe  279 (279)
T cd02667         270 KSEAYLLFYE  279 (279)
T ss_pred             cCCcEEEEeC
Confidence            9999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=99.95  E-value=3.8e-28  Score=183.81  Aligned_cols=128  Identities=22%  Similarity=0.305  Sum_probs=98.3

Q ss_pred             cCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCC--CCCCC---------Cccccc
Q psy8602           9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCS--EDEDE---------GVAPYE   73 (140)
Q Consensus         9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~--~~~~~---------~~~~~~   73 (140)
                      +...+|..|+..+....++.|.|+.|....    .......|++++|+|+||..+...  ..|..         ++.++.
T Consensus       148 sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~  227 (300)
T cd02663         148 SITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTT  227 (300)
T ss_pred             CHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEeccccc
Confidence            445678888888888777779999998633    233446788999999999865432  22222         222221


Q ss_pred             --cCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecccccc--------CCCcEEEEEE
Q psy8602          74 --LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVL--------NSEAYMLVYE  136 (140)
Q Consensus        74 --~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~--------~~~aYiLfY~  136 (140)
                        ...++..|+|+|||+|.|.++++|||+|++|..+.|++|||+.|++++.++|.        +.+||||||+
T Consensus       228 ~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~  300 (300)
T cd02663         228 DDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ  300 (300)
T ss_pred             cccCCCCeEEEEEEEEEEecCCCCCCceEEEEECCCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence              11245799999999999955899999999999779999999999999999886        5789999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.94  E-value=1e-27  Score=183.45  Aligned_cols=125  Identities=23%  Similarity=0.373  Sum_probs=93.6

Q ss_pred             HHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCC-----------CCCCCCcccccc--
Q psy8602          12 PLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCS-----------EDEDEGVAPYEL--   74 (140)
Q Consensus        12 p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~-----------~~~~~~~~~~~~--   74 (140)
                      .+|..|+..+....++.|.|+.|+...    .......|++++|+|+||.++...           .+..+++.++..  
T Consensus       138 ~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~  217 (327)
T cd02664         138 DLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESK  217 (327)
T ss_pred             HHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCcccccc
Confidence            355556666666666679999997643    233446788999999999765422           122333433321  


Q ss_pred             -------------------CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC----------------------CcEEEEc
Q psy8602          75 -------------------NLEDNRYELCSVIKHSGLNIDVGHYTTYISQH----------------------KRWFLCD  113 (140)
Q Consensus        75 -------------------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~----------------------~~W~~~~  113 (140)
                                         ...+..|+|+|||+|.|.++++|||+||+|..                      +.||.||
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fn  297 (327)
T cd02664         218 SSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFN  297 (327)
T ss_pred             ccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEe
Confidence                               12357899999999999668999999999974                      4899999


Q ss_pred             CCeeEEeccccccC-------CCcEEEEEE
Q psy8602         114 DTKIKPVGITDVLN-------SEAYMLVYE  136 (140)
Q Consensus       114 D~~v~~~~~~~v~~-------~~aYiLfY~  136 (140)
                      |+.|++++.++|.+       .+||||||+
T Consensus       298 D~~V~~~~~~~v~~~~~~~~~~~aYlLfY~  327 (327)
T cd02664         298 DSRVTFSSFESVQNVTSRFPKDTPYILFYE  327 (327)
T ss_pred             CCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence            99999999999986       799999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=99.94  E-value=2.7e-27  Score=174.18  Aligned_cols=120  Identities=25%  Similarity=0.373  Sum_probs=96.2

Q ss_pred             cCcHHHHHHhhcccccCccccCcccchhhhhhhhhhcCCccccccccccccC-CCCCCCCCccccccCCCCCcEEEEEEE
Q psy8602           9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDY-CSEDEDEGVAPYELNLEDNRYELCSVI   87 (140)
Q Consensus         9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~~~~~~~~l~l~rf~~~~-~~~~~~~~~~~~~~~~~~~~Y~L~~vi   87 (140)
                      +...+|..|+..+...   .+.|+.|    .......|++++|+|+||..+. ....|..+...|+...++..|+|+|||
T Consensus        97 sl~~~L~~~~~~E~l~---~~~C~~C----~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l~~~~Y~L~avi  169 (240)
T cd02662          97 TLEHCLDDFLSTEIID---DYKCDRC----QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERLPKVLYRLRAVV  169 (240)
T ss_pred             CHHHHHHHhcCccccc---CcCCCCC----eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCccCCceEEEEEEE
Confidence            3446677777777663   3789999    3334567889999999998765 344455555555554578899999999


Q ss_pred             EeecCCCCCCeEEEEEeCC----------------------CcEEEEcCCeeEEeccccc-cCCCcEEEEEE
Q psy8602          88 KHSGLNIDVGHYTTYISQH----------------------KRWFLCDDTKIKPVGITDV-LNSEAYMLVYE  136 (140)
Q Consensus        88 ~H~G~~~~~GHY~~~~~~~----------------------~~W~~~~D~~v~~~~~~~v-~~~~aYiLfY~  136 (140)
                      +|.| +.++|||+|++|.+                      +.||+|||+.|+++++++| .+.+||||||+
T Consensus       170 ~H~G-~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe  240 (240)
T cd02662         170 VHYG-SHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE  240 (240)
T ss_pred             EEec-cCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence            9999 67999999999997                      5999999999999999999 88999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.93  E-value=1.3e-26  Score=177.75  Aligned_cols=124  Identities=24%  Similarity=0.368  Sum_probs=94.6

Q ss_pred             cCcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccCCC------CCC---------CCCc
Q psy8602           9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYCS------EDE---------DEGV   69 (140)
Q Consensus         9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~~------~~~---------~~~~   69 (140)
                      +...+|..|+..+....+++|.|+.|+....    ......|++++|+|+||..+...      ..|         .+++
T Consensus       181 tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~  260 (332)
T cd02671         181 TLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSL  260 (332)
T ss_pred             CHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcccccc
Confidence            4557788999998887777799999976432    22335688999999999865311      122         2233


Q ss_pred             cccccCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecccccc---------CCCcEEEEEE
Q psy8602          70 APYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVL---------NSEAYMLVYE  136 (140)
Q Consensus        70 ~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~---------~~~aYiLfY~  136 (140)
                      .++.....+..|+|+|||+|.|.++++|||+||+|    |++|||+.|++++++++.         ..+||||||+
T Consensus       261 ~~~~~~~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~  332 (332)
T cd02671         261 EEWSTKPKNDVYRLFAVVMHSGATISSGHYTAYVR----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK  332 (332)
T ss_pred             ccccCCCCCCeEEEEEEEEEcCCCCCCCeEEEEEE----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence            33333445688999999999996689999999999    999999999999887764         3589999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=99.93  E-value=3.6e-26  Score=168.69  Aligned_cols=107  Identities=29%  Similarity=0.548  Sum_probs=82.3

Q ss_pred             ccCcccchhhhh---hhhhhcCCccccccccccccCCCC----CCCCCccccccCCCCCcEEEEEEEEeecCCCCCCeEE
Q psy8602          28 DQYCFLCKIEAL---FNEFYNGNVEPIDLTKYRSDYCSE----DEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYT  100 (140)
Q Consensus        28 ~~~C~~C~~~~~---f~~~~~~~~~~l~l~rf~~~~~~~----~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~  100 (140)
                      .+.|+.|+....   ......|++++|+|+||.......    ....++.++..  ++..|+|+|||+|.|.++++|||+
T Consensus       126 e~~C~~C~~~~a~k~~~i~~~P~vL~i~lkRf~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~L~~VV~H~G~~~~~GHY~  203 (245)
T cd02673         126 EKDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKKNEEIMKKYCG--TDAKYSLVAVICHLGESPYDGHYI  203 (245)
T ss_pred             CccCCCCCCccceeechhhhCChhhEEeeEeeeecccccccccccccccccccC--CCceEEEEEEEEECCCCCCCceEE
Confidence            378999987432   333457889999999996533111    11123444433  567899999999999668999999


Q ss_pred             EEEeC---CCcEEEEcCCeeEEecccccc---CCCcEEEEEE
Q psy8602         101 TYISQ---HKRWFLCDDTKIKPVGITDVL---NSEAYMLVYE  136 (140)
Q Consensus       101 ~~~~~---~~~W~~~~D~~v~~~~~~~v~---~~~aYiLfY~  136 (140)
                      |++|.   .++||.|||+.|+++++++|.   +++||||||+
T Consensus       204 a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~  245 (245)
T cd02673         204 AYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD  245 (245)
T ss_pred             EEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence            99998   459999999999999999998   5799999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.93  E-value=2.1e-26  Score=174.72  Aligned_cols=126  Identities=17%  Similarity=0.325  Sum_probs=96.2

Q ss_pred             hhcCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccC-CCCCCCCCccccccCCCCCcE
Q psy8602           7 AFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDY-CSEDEDEGVAPYELNLEDNRY   81 (140)
Q Consensus         7 ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~-~~~~~~~~~~~~~~~~~~~~Y   81 (140)
                      ..+...+|..|+..+...    ..|..|+...    ..+....|++++|+|+||..+. ....+......++....+..|
T Consensus       177 ~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l~~~~Y  252 (311)
T cd02658         177 PVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEELGPGKY  252 (311)
T ss_pred             CCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcCCCCcE
Confidence            345556677777666553    4677787633    2334467889999999998742 223333333334444467899


Q ss_pred             EEEEEEEeecCCCCCCeEEEEEeCC----CcEEEEcCCeeEEeccccccCCCcEEEEEE
Q psy8602          82 ELCSVIKHSGLNIDVGHYTTYISQH----KRWFLCDDTKIKPVGITDVLNSEAYMLVYE  136 (140)
Q Consensus        82 ~L~~vi~H~G~~~~~GHY~~~~~~~----~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~  136 (140)
                      +|+|||+|.|.++++|||+|++|..    ++||.|||+.|++++..++.+++||||||+
T Consensus       253 ~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~  311 (311)
T cd02658         253 ELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ  311 (311)
T ss_pred             EEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence            9999999999669999999999998    699999999999999999999999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.93  E-value=6e-26  Score=173.41  Aligned_cols=127  Identities=21%  Similarity=0.296  Sum_probs=96.2

Q ss_pred             CcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCC-----------CCCCCCCcccccc
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAPYEL   74 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~~~~   74 (140)
                      ...+|..|+..+....++.|.|+.|....    .......|++++|+|+||.++..           ..++.+++.++..
T Consensus       158 l~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~  237 (324)
T cd02668         158 LEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLA  237 (324)
T ss_pred             HHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcc
Confidence            34567777777777666669999998643    23334688899999999976532           2234455666533


Q ss_pred             C--CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccc---------------------cCCC
Q psy8602          75 N--LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDV---------------------LNSE  129 (140)
Q Consensus        75 ~--~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v---------------------~~~~  129 (140)
                      .  .++..|+|+|||+|.|.++++|||+|++|..  +.||.|||+.|++++.+.+                     .+..
T Consensus       238 ~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (324)
T cd02668         238 ESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRT  317 (324)
T ss_pred             cccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCc
Confidence            2  3567899999999999668999999999985  4999999999999977765                     2457


Q ss_pred             cEEEEEE
Q psy8602         130 AYMLVYE  136 (140)
Q Consensus       130 aYiLfY~  136 (140)
                      ||||||+
T Consensus       318 ~y~l~y~  324 (324)
T cd02668         318 AYMLVYK  324 (324)
T ss_pred             eEEEEeC
Confidence            9999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=99.93  E-value=7.1e-26  Score=165.13  Aligned_cols=125  Identities=17%  Similarity=0.222  Sum_probs=94.6

Q ss_pred             cCcHHHHHHhhcccccCccccCcccchhhhhhhhhhcCCccccccccccccCCCCCCCCCccccccCCCCCcEEEEEEEE
Q psy8602           9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIK   88 (140)
Q Consensus         9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~~~~~~~~l~l~rf~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~   88 (140)
                      +...+|..++..+.......+.+  ++..+.......|++++|||+||.++.....|..+...|+.......|+|+|||+
T Consensus        94 ~L~e~L~~~~~ee~l~~~~~~~~--~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l~~~~Y~L~aVi~  171 (228)
T cd02665          94 NLHECLEAAMFEGEVELLPSDHS--VKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQIIQQVPYELHAVLV  171 (228)
T ss_pred             CHHHHHHHhhhhcccccccccch--hhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCccCCceeEEEEEEE
Confidence            34466777777666644332222  1222223345678999999999998765556666666777766788999999999


Q ss_pred             eecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccC--------CCcEEEEEE
Q psy8602          89 HSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLN--------SEAYMLVYE  136 (140)
Q Consensus        89 H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~--------~~aYiLfY~  136 (140)
                      |.| ++++|||++++|..  +.||.|||+.|++++.++|..        .+||||||.
T Consensus       172 H~G-~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv  228 (228)
T cd02665         172 HEG-QANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI  228 (228)
T ss_pred             ecC-CCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence            999 79999999999864  499999999999999998864        479999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.92  E-value=1.4e-25  Score=171.45  Aligned_cols=129  Identities=24%  Similarity=0.409  Sum_probs=97.9

Q ss_pred             CcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccCC-----------CCCCCCCcccccc
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAPYEL   74 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~~~~   74 (140)
                      ..++|..|+..+.....+.+.|+.|.....    ......|++++|+|+||..+..           ..+..+++.++..
T Consensus       153 l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~  232 (334)
T cd02659         153 LEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTE  232 (334)
T ss_pred             HHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccc
Confidence            345677788777766666689999987522    2233578899999999975432           1223344544432


Q ss_pred             -------------CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEecccccc-------------
Q psy8602          75 -------------NLEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVL-------------  126 (140)
Q Consensus        75 -------------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~-------------  126 (140)
                                   ...+..|+|+|||+|.| +.++|||++++|..  +.|+.|||+.|+++++++|.             
T Consensus       233 ~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~  311 (334)
T cd02659         233 KGLAKKEGDSEKKDSESYIYELHGVLVHSG-DAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTY  311 (334)
T ss_pred             cccccccccccccCCCCeeEEEEEEEEecC-CCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccc
Confidence                         22467899999999999 89999999999986  59999999999999999884             


Q ss_pred             ---------CCCcEEEEEEEec
Q psy8602         127 ---------NSEAYMLVYEKKV  139 (140)
Q Consensus       127 ---------~~~aYiLfY~r~~  139 (140)
                               +.+||||||+|++
T Consensus       312 ~~~~~~~~~~~~ay~l~Y~~~~  333 (334)
T cd02659         312 DSGPRAFKRTTNAYMLFYERKS  333 (334)
T ss_pred             cccccccccccceEEEEEEEeC
Confidence                     3469999999975

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.92  E-value=1.9e-25  Score=170.44  Aligned_cols=127  Identities=26%  Similarity=0.364  Sum_probs=99.6

Q ss_pred             hcCcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccCC----------CCCCCCCccccc
Q psy8602           8 FSHVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYC----------SEDEDEGVAPYE   73 (140)
Q Consensus         8 l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~----------~~~~~~~~~~~~   73 (140)
                      .+..++|..|+..+.....+ |.|+.|+....    ......|++++|+|+||..+..          ..+..+++.++.
T Consensus       176 ~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~  254 (328)
T cd02660         176 PTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYT  254 (328)
T ss_pred             CCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhc
Confidence            34456777777777765544 89999997532    3334678899999999986541          122334555554


Q ss_pred             c-----------CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC-CcEEEEcCCeeEEeccccccCCCcEEEEEE
Q psy8602          74 L-----------NLEDNRYELCSVIKHSGLNIDVGHYTTYISQH-KRWFLCDDTKIKPVGITDVLNSEAYMLVYE  136 (140)
Q Consensus        74 ~-----------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~-~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~  136 (140)
                      .           ...+..|+|+|||+|.| +.++|||++++|.. ++|+.|||+.|++++++++...+||||||.
T Consensus       255 ~~~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~  328 (328)
T cd02660         255 SSSIGDTQDSNSLDPDYTYDLFAVVVHKG-TLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH  328 (328)
T ss_pred             ccccccccccccCCCCceEEEEEEEEeec-cCCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence            3           23568899999999999 88999999999999 599999999999999999999999999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2e-25  Score=165.63  Aligned_cols=128  Identities=17%  Similarity=0.329  Sum_probs=100.2

Q ss_pred             CcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCCCCCCCccc--------------
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAP--------------   71 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~~~~~~~~~--------------   71 (140)
                      ..+|++.|-..+.+..+.+|.|+.|..++    .++....|++++|+++||.-. .-..+..|..+              
T Consensus       266 l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~-V~~~~kiD~p~gw~~~~~~e~~v~~  344 (415)
T COG5533         266 LQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHIS-VMGRKKIDTPQGWKNTASVEVNVTL  344 (415)
T ss_pred             HHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeeeeEE-eecccccCCCcchhccCCceecccc
Confidence            67889999998888888889999998743    456668899999999999611 11111111111              


Q ss_pred             -c--ccCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecc-ccccCCCcEEEEEEEec
Q psy8602          72 -Y--ELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGI-TDVLNSEAYMLVYEKKV  139 (140)
Q Consensus        72 -~--~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~-~~v~~~~aYiLfY~r~~  139 (140)
                       |  ..+-.+.+|.|+|||+|.| ++++|||+++|+.++.|+.|||+.|++++- .+....+||||||+|.+
T Consensus       345 ~f~~~~~~~P~~Y~L~gv~Ch~G-~L~gGHY~s~v~~~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~~  415 (415)
T COG5533         345 LFNNGIGYIPRKYSLLGVVCHNG-TLNGGHYFSEVKRSGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRSS  415 (415)
T ss_pred             cccCCCCCCccceeEEEEEeecc-eecCceeEEeeeecCceEEechhheeeccceecccCCcceEEEEEecC
Confidence             1  2233678999999999999 999999999999999999999999999964 35556789999999863

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=99.92  E-value=4.3e-25  Score=160.64  Aligned_cols=127  Identities=26%  Similarity=0.429  Sum_probs=96.6

Q ss_pred             cCcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccCCCCCC----------CCCcccc--
Q psy8602           9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYCSEDE----------DEGVAPY--   72 (140)
Q Consensus         9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~~~~~----------~~~~~~~--   72 (140)
                      +..++|..++..+.......+.|+.|.....    ......|++++|+|+||..+.....+          .+++.++  
T Consensus        85 sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~~  164 (230)
T cd02674          85 TLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYVD  164 (230)
T ss_pred             CHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEeccccccccccccC
Confidence            4455677777666665555689999986443    22335788999999999876422222          2333333  


Q ss_pred             -ccCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEE
Q psy8602          73 -ELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYE  136 (140)
Q Consensus        73 -~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~  136 (140)
                       .......+|+|+|||+|.| +.++|||++++|..  +.|+.|||+.|++++.+++...+||||||+
T Consensus       165 ~~~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~  230 (230)
T cd02674         165 TRSFTGPFKYDLYAVVNHYG-SLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE  230 (230)
T ss_pred             cccCCCCceEEEEEEEEeeC-CCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence             1123567899999999999 56999999999998  599999999999999999988999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.91  E-value=4.7e-25  Score=166.05  Aligned_cols=126  Identities=28%  Similarity=0.446  Sum_probs=96.8

Q ss_pred             cHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCcccccccccccc-C------CCCCCCCCccccccC--CC
Q psy8602          11 VPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSD-Y------CSEDEDEGVAPYELN--LE   77 (140)
Q Consensus        11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~-~------~~~~~~~~~~~~~~~--~~   77 (140)
                      ...|..++..+....++.+.|+.|.....    ......|++++|+|+||..+ .      ...+..+++.++...  ..
T Consensus       165 ~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~~~~~~  244 (304)
T cd02661         165 EDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMSQPNDG  244 (304)
T ss_pred             HHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCeechhhccccCCCC
Confidence            45667777777666556689999987443    22235788999999999876 1      112233445554432  35


Q ss_pred             CCcEEEEEEEEeecCCCCCCeEEEEEeCC-CcEEEEcCCeeEEeccccccCCCcEEEEEE
Q psy8602          78 DNRYELCSVIKHSGLNIDVGHYTTYISQH-KRWFLCDDTKIKPVGITDVLNSEAYMLVYE  136 (140)
Q Consensus        78 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~-~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~  136 (140)
                      ...|+|+|||+|.|.++++|||++++|.. +.|+.|||..|++++++++.+.+||||||.
T Consensus       245 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~  304 (304)
T cd02661         245 PLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI  304 (304)
T ss_pred             CceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence            78999999999999666999999999984 499999999999999999999999999993

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.91  E-value=6.2e-25  Score=166.19  Aligned_cols=119  Identities=20%  Similarity=0.280  Sum_probs=86.8

Q ss_pred             cHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCC--C---------CCCCCccccccC
Q psy8602          11 VPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCS--E---------DEDEGVAPYELN   75 (140)
Q Consensus        11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~--~---------~~~~~~~~~~~~   75 (140)
                      .++|..++-.+..     ..|..|....    .......|++++|||+||..+...  .         +..+++.++.. 
T Consensus       163 ~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~-  236 (305)
T cd02657         163 QDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT-  236 (305)
T ss_pred             HHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC-
Confidence            4556666544332     3456665432    233346788999999999865432  1         22223333332 


Q ss_pred             CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccC-------CCcEEEEEE
Q psy8602          76 LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLN-------SEAYMLVYE  136 (140)
Q Consensus        76 ~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~-------~~aYiLfY~  136 (140)
                       ++..|+|+|||+|.|.+.++|||+||+|..  +.|+.|||+.|+++++++|..       .+||||||+
T Consensus       237 -~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~  305 (305)
T cd02657         237 -PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK  305 (305)
T ss_pred             -CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence             567999999999999668999999999999  699999999999999999974       589999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1870|consensus

Probab=99.91  E-value=5.4e-25  Score=184.98  Aligned_cols=130  Identities=23%  Similarity=0.368  Sum_probs=107.1

Q ss_pred             cCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCCC----------CCCCcccccc
Q psy8602           9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSED----------EDEGVAPYEL   74 (140)
Q Consensus         9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~~----------~~~~~~~~~~   74 (140)
                      +...|+..|..+|.+..+..|+|+.|+..+    +...+..|++++||||||.+......          ..+++++|..
T Consensus       697 sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~  776 (842)
T KOG1870|consen  697 SLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVV  776 (842)
T ss_pred             cHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhc
Confidence            344577788888888777779999999833    35556789999999999976554333          3345556666


Q ss_pred             CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC--cEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602          75 NLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV  139 (140)
Q Consensus        75 ~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~--~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~  139 (140)
                      +.+...|+|+||.+|.| .+.+|||+||+|+.+  +||.|||+.|++++++++.+..||+|||+|++
T Consensus       777 ~~~~~~Y~l~av~nHyG-~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~  842 (842)
T KOG1870|consen  777 NKEQVLYDLYAVGNHYG-QLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD  842 (842)
T ss_pred             cCccceeeeeeeecccC-CcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence            66669999999999999 899999999999953  99999999999999999999999999999975

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=99.91  E-value=2.1e-24  Score=158.62  Aligned_cols=94  Identities=20%  Similarity=0.379  Sum_probs=71.9

Q ss_pred             hhcCCccccccccccccC---------CCCCCCCCccccccC------------------------CCCCcEEEEEEEEe
Q psy8602          43 FYNGNVEPIDLTKYRSDY---------CSEDEDEGVAPYELN------------------------LEDNRYELCSVIKH   89 (140)
Q Consensus        43 ~~~~~~~~l~l~rf~~~~---------~~~~~~~~~~~~~~~------------------------~~~~~Y~L~~vi~H   89 (140)
                      ...|++++||||||....         ...+..+++.++..+                        .....|+|+|||+|
T Consensus        96 ~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H  175 (241)
T cd02670          96 AKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCH  175 (241)
T ss_pred             hhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEe
Confidence            356778889999997643         233445566665322                        23468999999999


Q ss_pred             ecCCCCCCeEEEEEeCC-------------CcEEEEcCCeeEEeccc------cccCCCcEEEEEE
Q psy8602          90 SGLNIDVGHYTTYISQH-------------KRWFLCDDTKIKPVGIT------DVLNSEAYMLVYE  136 (140)
Q Consensus        90 ~G~~~~~GHY~~~~~~~-------------~~W~~~~D~~v~~~~~~------~v~~~~aYiLfY~  136 (140)
                      .|.++++|||+||+|..             +.|+.|||+.|+.+...      .+...+||||||+
T Consensus       176 ~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq  241 (241)
T cd02670         176 RGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ  241 (241)
T ss_pred             CCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence            99668999999999988             38999999998877432      5677899999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.90  E-value=2.5e-24  Score=170.57  Aligned_cols=98  Identities=16%  Similarity=0.296  Sum_probs=79.9

Q ss_pred             hhhhhhhcCCccccccccccccCCCCCC----------CCCcccccc-----CCCCCcEEEEEEEEeecCCC-CCCeEEE
Q psy8602          38 ALFNEFYNGNVEPIDLTKYRSDYCSEDE----------DEGVAPYEL-----NLEDNRYELCSVIKHSGLNI-DVGHYTT  101 (140)
Q Consensus        38 ~~f~~~~~~~~~~l~l~rf~~~~~~~~~----------~~~~~~~~~-----~~~~~~Y~L~~vi~H~G~~~-~~GHY~~  101 (140)
                      +++.....|++++||||||..+.....+          .+|+.|+..     ...+..|+|+|||+|.| +. ++|||++
T Consensus       325 k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G-~~~~sGHY~a  403 (440)
T cd02669         325 KRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEG-TPQEDGTWRV  403 (440)
T ss_pred             EEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEec-cCCCCeeEEE
Confidence            3466667899999999999876432222          245666542     13568999999999999 66 9999999


Q ss_pred             EEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEE
Q psy8602         102 YISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYE  136 (140)
Q Consensus       102 ~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~  136 (140)
                      ++|+.  ++||.|||+.|+++++++|...+||||||+
T Consensus       404 ~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~  440 (440)
T cd02669         404 QLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE  440 (440)
T ss_pred             EEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence            99974  499999999999999999999999999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1868|consensus

Probab=99.90  E-value=3.3e-24  Score=174.31  Aligned_cols=129  Identities=28%  Similarity=0.435  Sum_probs=97.2

Q ss_pred             CcHHHHHHhhcccccCccccCcccchhhhhh------hhhhcCCccccccccccccCCCCCCCC----------Cccccc
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEALF------NEFYNGNVEPIDLTKYRSDYCSEDEDE----------GVAPYE   73 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f------~~~~~~~~~~l~l~rf~~~~~~~~~~~----------~~~~~~   73 (140)
                      .-+|+.-|.-.+....+..|.|+.|+..+..      ..+..|+++++||+||..+.....+..          +..+..
T Consensus       499 L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~  578 (653)
T KOG1868|consen  499 LEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRF  578 (653)
T ss_pred             hHhhhccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhc
Confidence            4455555555555555666999999986554      345678899999999987642222221          111111


Q ss_pred             c--CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC--cEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602          74 L--NLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV  139 (140)
Q Consensus        74 ~--~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~--~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~  139 (140)
                      .  ...+..|+|+||++|.| ++++|||+|+|+..+  .|+.|||+.|++++..++.+.+||||||+|.+
T Consensus       579 ~~~~~~~~~Y~L~aVv~H~G-tl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~  647 (653)
T KOG1868|consen  579 AEKGNNPKSYRLYAVVNHSG-TLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLG  647 (653)
T ss_pred             cccCCCccceeeEEEEeccC-cccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCC
Confidence            1  12346699999999999 999999999998864  89999999999999999999999999999864

>KOG1866|consensus

Probab=99.89  E-value=1.1e-24  Score=175.58  Aligned_cols=137  Identities=23%  Similarity=0.417  Sum_probs=110.9

Q ss_pred             chhhhhhcCcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccC-----------CCCCCC
Q psy8602           2 NVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDY-----------CSEDED   66 (140)
Q Consensus         2 n~~lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~-----------~~~~~~   66 (140)
                      |..+.+=+..+.|.+|...+-+..+++++|++|+.++.    ......|+++.|+||||.++.           +.++-.
T Consensus       240 ~l~i~~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~  319 (944)
T KOG1866|consen  240 NLDIRHQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRE  319 (944)
T ss_pred             eeecccchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchh
Confidence            45555666778899999999999999999999998553    344578999999999997654           234555


Q ss_pred             CCccccccC-------------------CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC-----cEEEEcCCeeEEecc
Q psy8602          67 EGVAPYELN-------------------LEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-----RWFLCDDTKIKPVGI  122 (140)
Q Consensus        67 ~~~~~~~~~-------------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~-----~W~~~~D~~v~~~~~  122 (140)
                      +|+.|+...                   ..+.+|+|+||++|+| -+++|||++|++...     +||+|||..|++++.
T Consensus       320 ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSG-qAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~  398 (944)
T KOG1866|consen  320 LDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSG-QASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKM  398 (944)
T ss_pred             hcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecc-cccCcchhhhhhhhccCCCCceEeccCccccccch
Confidence            677776431                   2468999999999999 999999999998764     999999999999998


Q ss_pred             ccccCC--------------------CcEEEEEEEec
Q psy8602         123 TDVLNS--------------------EAYMLVYEKKV  139 (140)
Q Consensus       123 ~~v~~~--------------------~aYiLfY~r~~  139 (140)
                      .++...                    +||||||+|.+
T Consensus       399 n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~  435 (944)
T KOG1866|consen  399 NEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMD  435 (944)
T ss_pred             hhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhc
Confidence            877531                    79999999875

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=99.88  E-value=3.9e-23  Score=154.37  Aligned_cols=120  Identities=18%  Similarity=0.232  Sum_probs=84.6

Q ss_pred             hcCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCC----ccccccccccccCCC----------------C
Q psy8602           8 FSHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGN----VEPIDLTKYRSDYCS----------------E   63 (140)
Q Consensus         8 l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~----~~~l~l~rf~~~~~~----------------~   63 (140)
                      .+..++|..++..+..   +++.|..|+...    .......|+    ++.||||||......                .
T Consensus       117 ~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f  193 (268)
T cd02672         117 STFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP  193 (268)
T ss_pred             CCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecc
Confidence            4455677777766533   347899998633    344456788    999999999753211                1


Q ss_pred             CCCCCccccc--cCCCCCcEEEEEEEEeecCCCCCCeEEEEEeC------CCcEEEEcCCeeEEeccccccCCCcEEEEE
Q psy8602          64 DEDEGVAPYE--LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQ------HKRWFLCDDTKIKPVGITDVLNSEAYMLVY  135 (140)
Q Consensus        64 ~~~~~~~~~~--~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~------~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY  135 (140)
                      +..+++.+..  ......+|+|+|||+|.|.+.++|||+|++|.      .++||.|||..|+++++      .||||||
T Consensus       194 ~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiLfY  267 (268)
T cd02672         194 KAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYILLY  267 (268)
T ss_pred             cccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheeeec
Confidence            1111111111  11245789999999999955599999999998      35899999999999987      9999999


Q ss_pred             E
Q psy8602         136 E  136 (140)
Q Consensus       136 ~  136 (140)
                      +
T Consensus       268 ~  268 (268)
T cd02672         268 Q  268 (268)
T ss_pred             C
Confidence            5

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1867|consensus

Probab=99.86  E-value=3.1e-22  Score=159.54  Aligned_cols=128  Identities=27%  Similarity=0.428  Sum_probs=97.0

Q ss_pred             CcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCC----------CCCCCccccccC
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSE----------DEDEGVAPYELN   75 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~----------~~~~~~~~~~~~   75 (140)
                      ..+++..+...+.+..+.+..|..|+...    .+..-..|.++.++++||.......          +..+++.||...
T Consensus       336 ~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~  415 (492)
T KOG1867|consen  336 LLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSS  415 (492)
T ss_pred             hhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccccCcccccchhhcCCccccc
Confidence            34455555555555555568999998742    3433456778999999996543222          223344444321


Q ss_pred             -------CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602          76 -------LEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK  138 (140)
Q Consensus        76 -------~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~  138 (140)
                             .++..|+|+|||+|.| +.++|||+||+|..+.|+++||+.|+.+++++|++..||+|||.++
T Consensus       416 ~~~~~~~~~~~~Y~L~AVV~H~G-~~~SGHY~aY~r~~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~  484 (492)
T KOG1867|consen  416 EKLKSQDNPDHLYELRAVVVHHG-TVGSGHYVAYRRQSGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQE  484 (492)
T ss_pred             cccccCCCCCceEEEEEEEEecc-CCCCCceEEEEEeCCCcEEEcCeEEEEeeHHHhhhchhhheehhHH
Confidence                   2578999999999999 7999999999999999999999999999999999999999999875

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.86  E-value=3.5e-22  Score=146.43  Aligned_cols=92  Identities=29%  Similarity=0.575  Sum_probs=72.9

Q ss_pred             hhcCCccccccccccccC-----------CCCC-CCCCccccccCCC-----CCcEEEEEEEEeecCCCCCCeEEEEEeC
Q psy8602          43 FYNGNVEPIDLTKYRSDY-----------CSED-EDEGVAPYELNLE-----DNRYELCSVIKHSGLNIDVGHYTTYISQ  105 (140)
Q Consensus        43 ~~~~~~~~l~l~rf~~~~-----------~~~~-~~~~~~~~~~~~~-----~~~Y~L~~vi~H~G~~~~~GHY~~~~~~  105 (140)
                      ...|++++|+++||..+.           ...+ +.+++.++.....     ...|+|+|||+|.| +.++|||+|++|.
T Consensus       156 ~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~  234 (269)
T PF00443_consen  156 SSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRD  234 (269)
T ss_dssp             EEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEE
T ss_pred             ccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeecc
Confidence            356788999999994332           1233 3455555544333     47999999999999 9999999999998


Q ss_pred             CC--cEEEEcCCeeEEeccccccC---CCcEEEEE
Q psy8602         106 HK--RWFLCDDTKIKPVGITDVLN---SEAYMLVY  135 (140)
Q Consensus       106 ~~--~W~~~~D~~v~~~~~~~v~~---~~aYiLfY  135 (140)
                      .+  +|+.|||+.|++++.++|..   .+||||||
T Consensus       235 ~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y  269 (269)
T PF00443_consen  235 SDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY  269 (269)
T ss_dssp             TTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred             ccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence            87  59999999999999999988   89999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>KOG1873|consensus

Probab=99.85  E-value=3.1e-23  Score=167.44  Aligned_cols=128  Identities=28%  Similarity=0.446  Sum_probs=95.6

Q ss_pred             CcHHHHHHhhcccccCccccCcccchh------hhh-----------h----------h----hhhcCCccccccccccc
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCKI------EAL-----------F----------N----EFYNGNVEPIDLTKYRS   58 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~------~~~-----------f----------~----~~~~~~~~~l~l~rf~~   58 (140)
                      ...||.+|-.-|.+..++.|.|+.|..      +++           +          +    .-..|||++||||||..
T Consensus       680 vq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q  759 (877)
T KOG1873|consen  680 VQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQ  759 (877)
T ss_pred             HHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhh
Confidence            345666666666677778899999976      211           0          0    01468899999999965


Q ss_pred             cCCC----------CCCCCCcccccc-------CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC---------------
Q psy8602          59 DYCS----------EDEDEGVAPYEL-------NLEDNRYELCSVIKHSGLNIDVGHYTTYISQH---------------  106 (140)
Q Consensus        59 ~~~~----------~~~~~~~~~~~~-------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~---------------  106 (140)
                      +...          +++.+++.+++.       .+....|+|+|+|.|.| ++.+|||++|+|.+               
T Consensus       760 ~~~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsg-tm~~ghyvayv~~~t~~~~~~~~~~~~~~  838 (877)
T KOG1873|consen  760 DIRGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSG-TMSYGHYVAYVRGGTFLDLSAPSNSKDFE  838 (877)
T ss_pred             hhhchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccc-cccCCcchhhhhccchhhccCccccccch
Confidence            4322          222223333321       12446899999999999 99999999999975               


Q ss_pred             -------CcEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602         107 -------KRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK  138 (140)
Q Consensus       107 -------~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~  138 (140)
                             +.||++.|+.|+++++++|+..+||||||+|.
T Consensus       839 sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI  877 (877)
T KOG1873|consen  839 SDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI  877 (877)
T ss_pred             hccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence                   28999999999999999999999999999984

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=99.84  E-value=5.4e-21  Score=138.25  Aligned_cols=124  Identities=28%  Similarity=0.494  Sum_probs=86.7

Q ss_pred             CcHHHHHHhhcccccCccccCcccch---h---hhhhhhhhcCCccccccccccccC-C---------CCCCCCCccccc
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCK---I---EALFNEFYNGNVEPIDLTKYRSDY-C---------SEDEDEGVAPYE   73 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~---~---~~~f~~~~~~~~~~l~l~rf~~~~-~---------~~~~~~~~~~~~   73 (140)
                      ....|..++..+....   ..|..|.   .   .+.......|+++.|+++||..+. .         ..+..+++.++.
T Consensus       101 l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~~~~~  177 (255)
T cd02257         101 LEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYL  177 (255)
T ss_pred             HHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccCcccc
Confidence            3444555555554432   4566665   2   122233467889999999997543 1         112222332221


Q ss_pred             --------cCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccc-----cCCCcEEEEEE
Q psy8602          74 --------LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDV-----LNSEAYMLVYE  136 (140)
Q Consensus        74 --------~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v-----~~~~aYiLfY~  136 (140)
                              .......|+|+|||+|.|.+.++|||++++|..  +.|+.|||..|++++.+++     ...+||+|||+
T Consensus       178 ~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~  255 (255)
T cd02257         178 SEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE  255 (255)
T ss_pred             ccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence                    123567899999999999556999999999998  6999999999999999998     56799999995

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=5.4e-20  Score=149.34  Aligned_cols=129  Identities=22%  Similarity=0.325  Sum_probs=100.8

Q ss_pred             cHHHHHHhhcccccCccccCcccchhhhhhhh---hhcCCcccccccccccc-----------CCCCCCCCCccccccC-
Q psy8602          11 VPLIRNFFLSTIHKCKLDQYCFLCKIEALFNE---FYNGNVEPIDLTKYRSD-----------YCSEDEDEGVAPYELN-   75 (140)
Q Consensus        11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~---~~~~~~~~l~l~rf~~~-----------~~~~~~~~~~~~~~~~-   75 (140)
                      .+.++.|...+.+..++.+.|..-.++..-+-   -..||++-|+||||..+           ..+++...|+.||... 
T Consensus       341 qeSfr~yIqvE~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~d  420 (1089)
T COG5077         341 QESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRD  420 (1089)
T ss_pred             HHHHHHhhhheeccCCcccccccccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCch
Confidence            35677888888888777777776666443221   24678899999999543           3456667788887542 


Q ss_pred             -----CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCC--------------------
Q psy8602          76 -----LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNS--------------------  128 (140)
Q Consensus        76 -----~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~--------------------  128 (140)
                           ..+..|.|+||++|.| .++.|||+|+.|..  +.||+|||++|+.++..+|+..                    
T Consensus       421 a~ksen~d~vY~LygVlVHsG-Dl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kR  499 (1089)
T COG5077         421 ADKSENSDAVYVLYGVLVHSG-DLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKR  499 (1089)
T ss_pred             hhhhcccCcEEEEEEEEEecc-ccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhh
Confidence                 3458999999999999 99999999999955  4999999999999999988632                    


Q ss_pred             --CcEEEEEEEecC
Q psy8602         129 --EAYMLVYEKKVL  140 (140)
Q Consensus       129 --~aYiLfY~r~~l  140 (140)
                        +||||.|-|+++
T Consensus       500 fmsAYmLvYlRks~  513 (1089)
T COG5077         500 FMSAYMLVYLRKSM  513 (1089)
T ss_pred             hhhhheeeeehHhH
Confidence              599999999863

>KOG1864|consensus

Probab=99.78  E-value=6.4e-19  Score=142.81  Aligned_cols=132  Identities=23%  Similarity=0.337  Sum_probs=98.6

Q ss_pred             hhhcCcHHHHHHhhcccccCccccCcccchh----hhhhhhhhcCCccccccccccccCCCC--CCCCC--ccccc----
Q psy8602           6 QAFSHVPLIRNFFLSTIHKCKLDQYCFLCKI----EALFNEFYNGNVEPIDLTKYRSDYCSE--DEDEG--VAPYE----   73 (140)
Q Consensus         6 Q~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~----~~~f~~~~~~~~~~l~l~rf~~~~~~~--~~~~~--~~~~~----   73 (140)
                      |--+.+++|..|...+.+..++..+|..|..    .+.++....|.++.|+||||.+.....  .+...  ..|-.    
T Consensus       419 e~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~  498 (587)
T KOG1864|consen  419 ENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLK  498 (587)
T ss_pred             ccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeec
Confidence            4556677888888888888888899999976    334555567778999999998764111  11111  11110    


Q ss_pred             --cCC---CCCcEEEEEEEEeecCCCCCCeEEEEEeCCCc-EEEEcCCeeEEeccccccC---CCcEEEEEEE
Q psy8602          74 --LNL---EDNRYELCSVIKHSGLNIDVGHYTTYISQHKR-WFLCDDTKIKPVGITDVLN---SEAYMLVYEK  137 (140)
Q Consensus        74 --~~~---~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~-W~~~~D~~v~~~~~~~v~~---~~aYiLfY~r  137 (140)
                        ...   +...|+|+|||+|.|.+++.|||+||+|..+. |+.|||+.|+.++.+++..   .+.|+++|..
T Consensus       499 ~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~  571 (587)
T KOG1864|consen  499 DTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYV  571 (587)
T ss_pred             cccccccCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeeeE
Confidence              111   23799999999999999999999999999995 9999999999999988865   4677777754

>KOG4598|consensus

Probab=99.76  E-value=5.2e-20  Score=148.53  Aligned_cols=128  Identities=26%  Similarity=0.393  Sum_probs=95.8

Q ss_pred             cHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccCC-----------CCCCCCCccc----
Q psy8602          11 VPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAP----   71 (140)
Q Consensus        11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~----   71 (140)
                      .+.|..|...+.+...+++.|..|+.+..    +....-|-++.||||||.+++.           .+++.+++..    
T Consensus       217 eeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~  296 (1203)
T KOG4598|consen  217 EEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNK  296 (1203)
T ss_pred             HHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhh
Confidence            45688888888888888899999997542    3222234468999999966542           1111111000    


Q ss_pred             ------------------------------------------c----------------------ccCCCCCcEEEEEEE
Q psy8602          72 ------------------------------------------Y----------------------ELNLEDNRYELCSVI   87 (140)
Q Consensus        72 ------------------------------------------~----------------------~~~~~~~~Y~L~~vi   87 (140)
                                                                .                      ....++..|+|++|.
T Consensus       297 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~im  376 (1203)
T KOG4598|consen  297 EKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVM  376 (1203)
T ss_pred             ccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhh
Confidence                                                      0                      001257899999999


Q ss_pred             EeecCCCCCCeEEEEEeCCC--cEEEEcCCeeEEeccccccC-------------CCcEEEEEEEec
Q psy8602          88 KHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLN-------------SEAYMLVYEKKV  139 (140)
Q Consensus        88 ~H~G~~~~~GHY~~~~~~~~--~W~~~~D~~v~~~~~~~v~~-------------~~aYiLfY~r~~  139 (140)
                      +|+| +..+|||+||+++-+  .||.|||.+|+-+++++++.             .+||||.|+|.+
T Consensus       377 ihsg-~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id  442 (1203)
T KOG4598|consen  377 VHSG-NAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRID  442 (1203)
T ss_pred             eecC-CCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcC
Confidence            9999 999999999999987  99999999999999999963             479999999865

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=99.58  E-value=4.1e-15  Score=114.66  Aligned_cols=59  Identities=31%  Similarity=0.581  Sum_probs=53.0

Q ss_pred             CCCcEEEEEEEEeecCCCCCCeEEEEEeCCC--cEEEEcCCeeEEeccccccC------CCcEEEEEE
Q psy8602          77 EDNRYELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLN------SEAYMLVYE  136 (140)
Q Consensus        77 ~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~--~W~~~~D~~v~~~~~~~v~~------~~aYiLfY~  136 (140)
                      .+..|+|+|||+|.| +.++|||++++|...  .|+.|||+.|++++.+++..      .+||+|+|.
T Consensus       277 ~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv  343 (343)
T cd02666         277 KSYGYRLHAVFIHRG-EASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV  343 (343)
T ss_pred             CCCceEEEEEEEeec-CCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence            467899999999999 779999999999764  99999999999999988864      489999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0944|consensus

Probab=99.41  E-value=4.7e-13  Score=108.12  Aligned_cols=61  Identities=25%  Similarity=0.516  Sum_probs=53.6

Q ss_pred             CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602          76 LEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK  138 (140)
Q Consensus        76 ~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~  138 (140)
                      .++.+|.|+|+|.|.|.+.++|||++++|..++|..|||+.|-  ..++--+..+||-||+|.
T Consensus       702 dg~~~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfNDeKv~--~S~~ppK~lgYvY~y~R~  762 (763)
T KOG0944|consen  702 DGPGKYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFNDEKVA--ASQEPPKDLGYVYLYTRI  762 (763)
T ss_pred             CCCcceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcchhhh--hccCChhhcceEEEEEec
Confidence            4678999999999999999999999999999999999999987  233334578999999995

>KOG1872|consensus

Probab=99.27  E-value=3.5e-12  Score=99.70  Aligned_cols=63  Identities=32%  Similarity=0.540  Sum_probs=57.4

Q ss_pred             CCcEEEEEEEEeecCCCCCCeEEEEEeCCC-cEEEEcCCeeEEeccccccC-------CCcEEEEEEEecC
Q psy8602          78 DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLN-------SEAYMLVYEKKVL  140 (140)
Q Consensus        78 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~-~W~~~~D~~v~~~~~~~v~~-------~~aYiLfY~r~~l  140 (140)
                      ...|+|.|||-|.|++..+|||++++|.++ .|++|||+.|+.+..+.+.+       ..||||.|.-+.|
T Consensus       401 ~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~~l  471 (473)
T KOG1872|consen  401 SGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKARVL  471 (473)
T ss_pred             cceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccccc
Confidence            567999999999999999999999999998 99999999999999988875       3799999987654

>KOG1863|consensus

Probab=99.26  E-value=3.8e-12  Score=110.27  Aligned_cols=128  Identities=25%  Similarity=0.308  Sum_probs=94.4

Q ss_pred             CcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccC-----------CCCCCCCCcccccc
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDY-----------CSEDEDEGVAPYEL   74 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~-----------~~~~~~~~~~~~~~   74 (140)
                      ..+.|..|+..|.+..++ ..|..|.....    ..-...||++.|+|+||.++.           +.++...++.++..
T Consensus       320 l~~sf~~y~~~E~l~gdn-~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~  398 (1093)
T KOG1863|consen  320 LEDSLHLYFEAEILLGDN-KYDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLS  398 (1093)
T ss_pred             HHHHHHHhhhHHHhcCCc-cccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhcc
Confidence            445677888878887777 47777765322    223467899999999997653           34445555555533


Q ss_pred             C-----CCC-CcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCC----------------Cc
Q psy8602          75 N-----LED-NRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNS----------------EA  130 (140)
Q Consensus        75 ~-----~~~-~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~----------------~a  130 (140)
                      .     ... ..|+|.||.+|.| ..++|||++|++..  +.|+.|||..|+.++..++...                .|
T Consensus       399 ~~~~~~~~~~~~y~l~~v~vh~g-~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  477 (1093)
T KOG1863|consen  399 RFKAEESERSAVYSLHAVLVHSG-DAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNA  477 (1093)
T ss_pred             ccchhhhhccceeccchhhcccc-cccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCc
Confidence            1     122 4999999999988 99999999999944  3999999999999987776421                28


Q ss_pred             EEEEEEEec
Q psy8602         131 YMLVYEKKV  139 (140)
Q Consensus       131 YiLfY~r~~  139 (140)
                      |+|+|.|.+
T Consensus       478 ~~lv~~~~s  486 (1093)
T KOG1863|consen  478 YMLVYIRDS  486 (1093)
T ss_pred             ceEEEEecC
Confidence            999999875

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1e-11  Score=98.25  Aligned_cols=59  Identities=31%  Similarity=0.635  Sum_probs=54.7

Q ss_pred             CcEEEEEEEEeecCCCCCCeEEEEEeCCC----cEEEEcCCeeEEeccccccCCCcEEEEEEE
Q psy8602          79 NRYELCSVIKHSGLNIDVGHYTTYISQHK----RWFLCDDTKIKPVGITDVLNSEAYMLVYEK  137 (140)
Q Consensus        79 ~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~----~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r  137 (140)
                      ..|.|.|||+|.|.++++|||++|+|...    +|..+||+.+-.++.=++...+.||.||+|
T Consensus       686 ~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R  748 (749)
T COG5207         686 KPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR  748 (749)
T ss_pred             CcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEec
Confidence            45999999999999999999999999987    999999999988877778889999999988

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=99.22  E-value=3.7e-11  Score=90.90  Aligned_cols=89  Identities=20%  Similarity=0.314  Sum_probs=61.8

Q ss_pred             cCcccchhhhh----hhhhhcCCccccccccccccCCCCCCCC---------Cccccc---------cCCCCCcEEEEEE
Q psy8602          29 QYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYCSEDEDE---------GVAPYE---------LNLEDNRYELCSV   86 (140)
Q Consensus        29 ~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~~~~~~~---------~~~~~~---------~~~~~~~Y~L~~v   86 (140)
                      ..|..|+....    -.....|+++.|+++++.....+..+..         .+..+.         ...+..+|+|.|+
T Consensus       181 a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~  260 (295)
T PF13423_consen  181 AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSM  260 (295)
T ss_pred             ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeeeccccccccccccccCCCCceEEEEEEE
Confidence            57888876332    2223578899999999876622211100         011011         1235679999999


Q ss_pred             EEeecCCCCCCeEEEEEeCC----CcEEEEcCCee
Q psy8602          87 IKHSGLNIDVGHYTTYISQH----KRWFLCDDTKI  117 (140)
Q Consensus        87 i~H~G~~~~~GHY~~~~~~~----~~W~~~~D~~v  117 (140)
                      |+|.|.+.++|||+|++|..    .+||.|||-.|
T Consensus       261 V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV  295 (295)
T PF13423_consen  261 VCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV  295 (295)
T ss_pred             EEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence            99999889999999999997    49999999765

>KOG1871|consensus

Probab=99.21  E-value=2.5e-11  Score=93.09  Aligned_cols=97  Identities=22%  Similarity=0.269  Sum_probs=73.5

Q ss_pred             hhcCCccccccccccccCCCC-CCCCC--------------cccc---ccCCCCCcEEEEEEEEeecCCCCCCeEEEEEe
Q psy8602          43 FYNGNVEPIDLTKYRSDYCSE-DEDEG--------------VAPY---ELNLEDNRYELCSVIKHSGLNIDVGHYTTYIS  104 (140)
Q Consensus        43 ~~~~~~~~l~l~rf~~~~~~~-~~~~~--------------~~~~---~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~  104 (140)
                      -..|+++++||+||.+..... .+..+              ++++   ........|+|.|++.|.|.+...|||+.-+-
T Consensus       300 eklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~  379 (420)
T KOG1871|consen  300 EKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVS  379 (420)
T ss_pred             hhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeee
Confidence            346778999999997653211 11110              1111   11234578999999999999999999999999


Q ss_pred             CCC--cEEEEcCCeeEEeccccccC----CCcEEEEEEEec
Q psy8602         105 QHK--RWFLCDDTKIKPVGITDVLN----SEAYMLVYEKKV  139 (140)
Q Consensus       105 ~~~--~W~~~~D~~v~~~~~~~v~~----~~aYiLfY~r~~  139 (140)
                      +..  .|+.+||..|..+..++|+.    ..||+|+|+|.+
T Consensus       380 ~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d  420 (420)
T KOG1871|consen  380 RSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD  420 (420)
T ss_pred             ecccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence            887  99999999999999999976    379999998864

>KOG2026|consensus

Probab=98.41  E-value=2.2e-08  Score=77.01  Aligned_cols=98  Identities=12%  Similarity=0.272  Sum_probs=80.7

Q ss_pred             hhhhhhhcCCccccccccccccCCCCCCCCCcccccc---------------CCCCCcEEEEEEEEeecCCCCCCeEEEE
Q psy8602          38 ALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYEL---------------NLEDNRYELCSVIKHSGLNIDVGHYTTY  102 (140)
Q Consensus        38 ~~f~~~~~~~~~~l~l~rf~~~~~~~~~~~~~~~~~~---------------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~  102 (140)
                      ++|..+.+|+.+++|++||..+....+++.++..|+.               ...-..|.|.|.++|.   -.-|||...
T Consensus       327 ~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riq  403 (442)
T KOG2026|consen  327 MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQ  403 (442)
T ss_pred             hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEE
Confidence            6677788999999999999988766666665555441               1123779999999996   467999999


Q ss_pred             EeCCC--cEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602         103 ISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYEKK  138 (140)
Q Consensus       103 ~~~~~--~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~  138 (140)
                      +++++  +||.++|-.|++..++.+.-.++||..|++.
T Consensus       404 i~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~  441 (442)
T KOG2026|consen  404 IYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ  441 (442)
T ss_pred             EEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence            99987  9999999999999999999999999988874

>KOG1275|consensus

Probab=98.19  E-value=5.2e-06  Score=70.08  Aligned_cols=57  Identities=21%  Similarity=0.361  Sum_probs=51.5

Q ss_pred             CcEEEEEEEEeecCCCCCCeEEEEEeCCC----------cEEEEcCCeeEEeccccccC-----CCcEEEEE
Q psy8602          79 NRYELCSVIKHSGLNIDVGHYTTYISQHK----------RWFLCDDTKIKPVGITDVLN-----SEAYMLVY  135 (140)
Q Consensus        79 ~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~----------~W~~~~D~~v~~~~~~~v~~-----~~aYiLfY  135 (140)
                      .+|+|.|+|+|.|.+-+.+|.+++++..+          +||.|||--|.+++++|+..     .-+-||+|
T Consensus       789 ~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y  860 (1118)
T KOG1275|consen  789 VVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY  860 (1118)
T ss_pred             EEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence            78999999999998889999999999763          89999999999999998875     35889999

>KOG1865|consensus

Probab=97.84  E-value=8e-06  Score=65.71  Aligned_cols=44  Identities=30%  Similarity=0.665  Sum_probs=37.2

Q ss_pred             CchhhhhhcCcHHHHHHhhccccc--CccccCcccchhhhhhhhhh
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHK--CKLDQYCFLCKIEALFNEFY   44 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~--~~~~~~C~~C~~~~~f~~~~   44 (140)
                      +|++||||+.+|||.+|++++.+.  |.....|..|.++.......
T Consensus       120 aNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~  165 (545)
T KOG1865|consen  120 ANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL  165 (545)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh
Confidence            699999999999999999999987  44458899999988765443

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=96.80  E-value=0.00076  Score=51.47  Aligned_cols=43  Identities=51%  Similarity=0.981  Sum_probs=35.3

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccC----ccccCcccchhhhhhhhh
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKC----KLDQYCFLCKIEALFNEF   43 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~----~~~~~C~~C~~~~~f~~~   43 (140)
                      |||+||||.++|++++++++.....    .....|..|.+.+.|..+
T Consensus        12 ~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l   58 (328)
T cd02660          12 MNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEF   58 (328)
T ss_pred             HHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHH
Confidence            7999999999999999999875442    122678999998888877

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=96.73  E-value=0.00074  Score=54.08  Aligned_cols=47  Identities=34%  Similarity=0.447  Sum_probs=36.0

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCc--cccCcccchhhhhhhhhhcCC
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCK--LDQYCFLCKIEALFNEFYNGN   47 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~--~~~~C~~C~~~~~f~~~~~~~   47 (140)
                      |||+||||.++|+|++++++......  ....|..|.+...+.+++++.
T Consensus       131 mNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~  179 (440)
T cd02669         131 ANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPR  179 (440)
T ss_pred             HHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccc
Confidence            79999999999999999998765421  123466777788888777664

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase

Probab=96.39  E-value=0.016  Score=43.05  Aligned_cols=42  Identities=36%  Similarity=0.778  Sum_probs=34.2

Q ss_pred             cccCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC-cEEEEcCCe
Q psy8602          72 YELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTK  116 (140)
Q Consensus        72 ~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~-~W~~~~D~~  116 (140)
                      +...-++..|.+.+||...- .  .-|+++++++.+ .|..+||-.
T Consensus       210 ysF~feg~~Y~Vt~VIQY~~-~--~~HFvtWi~~~dGsWLecDDLk  252 (275)
T PF15499_consen  210 YSFHFEGCLYQVTSVIQYQA-N--LNHFVTWIRDSDGSWLECDDLK  252 (275)
T ss_pred             cceeecCeeEEEEEEEEEec-c--CceeEEEEEcCCCCeEeeccCC
Confidence            33344678899999998866 3  569999999998 999999965

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=96.07  E-value=0.0035  Score=47.03  Aligned_cols=43  Identities=30%  Similarity=0.654  Sum_probs=31.4

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccC--ccccCcccchhhhhhhhh
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKC--KLDQYCFLCKIEALFNEF   43 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~--~~~~~C~~C~~~~~f~~~   43 (140)
                      |||+||+|.++|++++++++.....  .....|..|.+...+..+
T Consensus        13 ~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   57 (304)
T cd02661          13 LNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERA   57 (304)
T ss_pred             HHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHH
Confidence            7999999999999999998654322  122567888877655444

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=96.01  E-value=0.003  Score=52.25  Aligned_cols=27  Identities=33%  Similarity=0.452  Sum_probs=24.6

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCcc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKL   27 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~   27 (140)
                      |||+||||.+++.|+.||+++....+.
T Consensus       277 MNSaLQCL~ht~eLrdyFlsdeye~~i  303 (823)
T COG5560         277 MNSALQCLMHTWELRDYFLSDEYEESI  303 (823)
T ss_pred             cchHHHHHhccHHHHHHhhhhhhHhhh
Confidence            899999999999999999999887544

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=95.92  E-value=0.0052  Score=46.62  Aligned_cols=46  Identities=17%  Similarity=0.248  Sum_probs=33.2

Q ss_pred             CchhhhhhcCcHHHHHHhhccccc--C--ccccCcccchhhhhhhhhhcC
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHK--C--KLDQYCFLCKIEALFNEFYNG   46 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~--~--~~~~~C~~C~~~~~f~~~~~~   46 (140)
                      |||+||||.++|++++++++....  +  .....|..|.+.+.+..+.++
T Consensus        11 ~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~   60 (311)
T cd02658          11 LNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSG   60 (311)
T ss_pred             HHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCC
Confidence            799999999999999999873221  1  112567888888776655443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=95.75  E-value=0.0055  Score=46.96  Aligned_cols=56  Identities=14%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCc-----------cccCcccchhhhhhhhhhcCCccccccccc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCK-----------LDQYCFLCKIEALFNEFYNGNVEPIDLTKY   56 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~-----------~~~~C~~C~~~~~f~~~~~~~~~~l~l~rf   56 (140)
                      |||+||+|.++|++++++++-.....           ....|..|.+.+.|..++.+....+++..|
T Consensus        11 ~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f   77 (324)
T cd02668          11 VNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGF   77 (324)
T ss_pred             HHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHH
Confidence            79999999999999999986543211           012567777788887777665445555444

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=95.13  E-value=0.011  Score=44.65  Aligned_cols=46  Identities=17%  Similarity=0.220  Sum_probs=34.3

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccC---ccccCcccchhhhhhhhhhcC
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKC---KLDQYCFLCKIEALFNEFYNG   46 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~---~~~~~C~~C~~~~~f~~~~~~   46 (140)
                      |||+||+|.++|+++.++++.....   .....|..|.+++.|..+...
T Consensus        11 ~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~   59 (305)
T cd02657          11 LNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKK   59 (305)
T ss_pred             HHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhC
Confidence            7999999999999999998765421   112457778888887766544

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.64  E-value=0.019  Score=41.64  Aligned_cols=56  Identities=25%  Similarity=0.471  Sum_probs=37.7

Q ss_pred             CchhhhhhcCcHHHHHHhhccc------ccC-ccccCcccchhhhhhhhhhcC--Cccccccccc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTI------HKC-KLDQYCFLCKIEALFNEFYNG--NVEPIDLTKY   56 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~------~~~-~~~~~C~~C~~~~~f~~~~~~--~~~~l~l~rf   56 (140)
                      |||+||+|.++|++++++++..      ... .....|..+.+++.+..++.+  ....+++..|
T Consensus        13 lNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~   77 (269)
T PF00443_consen   13 LNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDF   77 (269)
T ss_dssp             HHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHH
T ss_pred             HhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeeccc
Confidence            6999999999999999999751      111 111456777788888777766  3333444333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=94.41  E-value=0.037  Score=42.28  Aligned_cols=46  Identities=24%  Similarity=0.173  Sum_probs=33.7

Q ss_pred             CchhhhhhcCcHHHHHHhhccccc-CccccCcccchhhhhhhhhhcC
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHK-CKLDQYCFLCKIEALFNEFYNG   46 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~-~~~~~~C~~C~~~~~f~~~~~~   46 (140)
                      |||+||+|.++|++++++++-... ......|..|.+...|..+...
T Consensus        14 ~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~   60 (334)
T cd02659          14 MNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLS   60 (334)
T ss_pred             HHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhC
Confidence            799999999999999999985211 1122567788888777665543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.38  E-value=0.052  Score=38.39  Aligned_cols=27  Identities=19%  Similarity=0.265  Sum_probs=23.1

Q ss_pred             CCeEEEEEeCCCcEEEEcCCeeEEecc
Q psy8602          96 VGHYTTYISQHKRWFLCDDTKIKPVGI  122 (140)
Q Consensus        96 ~GHY~~~~~~~~~W~~~~D~~v~~~~~  122 (140)
                      .||-+.+++..+.||.+||+.+-+-++
T Consensus       138 ~~Havfa~~ts~gWy~iDDe~~y~~tP  164 (193)
T PF05408_consen  138 QEHAVFACVTSDGWYAIDDEDFYPWTP  164 (193)
T ss_dssp             TTEEEEEEEETTCEEEEETTEEEE---
T ss_pred             CcceEEEEEeeCcEEEecCCeeeeCCC
Confidence            699999999999999999999998855

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=94.36  E-value=0.017  Score=43.33  Aligned_cols=20  Identities=25%  Similarity=0.602  Sum_probs=18.8

Q ss_pred             CchhhhhhcCcHHHHHHhhc
Q psy8602           1 MNVILQAFSHVPLIRNFFLS   20 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~   20 (140)
                      |||+||+|.++|++++++++
T Consensus        11 ~NsvLQ~L~~~~~~~~~~l~   30 (279)
T cd02667          11 FNAVMQNLSQTPALRELLSE   30 (279)
T ss_pred             HHHHHHHHhcCHHHHHHHHH
Confidence            79999999999999999975

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=93.73  E-value=0.046  Score=42.03  Aligned_cols=43  Identities=26%  Similarity=0.161  Sum_probs=29.1

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCccccCcccchhhhhhhhh
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEF   43 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~   43 (140)
                      |||+||||.++|++++++++..........+..+.....|..+
T Consensus        11 ~NS~LQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~~L~~lf~~l   53 (327)
T cd02664          11 MNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHL   53 (327)
T ss_pred             HHHHHHHHHCcHHHHHHHHcCCccccCCcchHHHHHHHHHHHH
Confidence            7999999999999999999876432111233445555544433

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=91.98  E-value=0.068  Score=39.24  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             CchhhhhhcCcHHHHHHhhccc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTI   22 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~   22 (140)
                      |||+||+|.+.|++++++.+..
T Consensus        11 ~ns~lQ~L~~~~~f~~~~~~~~   32 (240)
T cd02662          11 MNSVLQALASLPSLIEYLEEFL   32 (240)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHH
Confidence            7999999999999999987653

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1867|consensus

Probab=89.91  E-value=0.16  Score=41.49  Aligned_cols=47  Identities=45%  Similarity=0.839  Sum_probs=40.7

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCccc---cCcccchhhhhhhhhhcCC
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKLD---QYCFLCKIEALFNEFYNGN   47 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~---~~C~~C~~~~~f~~~~~~~   47 (140)
                      ||+++|++.+.|..+..++.+.+.++..   ..|..|...+.+..++++.
T Consensus       173 mn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~  222 (492)
T KOG1867|consen  173 MNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGH  222 (492)
T ss_pred             HHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCC
Confidence            7999999999999999999999874332   7899999999988887776

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=89.58  E-value=0.17  Score=39.47  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             CchhhhhhcCcHHHHHHhhccc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTI   22 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~   22 (140)
                      |||+||+|..+|+|+.+++.-.
T Consensus        13 mNSlLQ~L~~i~~lR~~i~~~~   34 (343)
T cd02666          13 LNSLLQYFFTIKPLRDLVLNFD   34 (343)
T ss_pred             HHHHHHHHHccHHHHHHHHcCC
Confidence            8999999999999999998743

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=86.55  E-value=0.33  Score=37.57  Aligned_cols=19  Identities=21%  Similarity=0.322  Sum_probs=17.0

Q ss_pred             CchhhhhhcCcHHHHHHhh
Q psy8602           1 MNVILQAFSHVPLIRNFFL   19 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l   19 (140)
                      |||+||||.++|.++....
T Consensus        36 mNSvLQ~L~~~p~fr~~l~   54 (332)
T cd02671          36 LNSVLQVLYFCPGFKHGLK   54 (332)
T ss_pred             HHHHHHHHHcChHHHHHHH
Confidence            8999999999999988753

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=85.57  E-value=0.36  Score=37.22  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=21.9

Q ss_pred             CchhhhhhcCcHHHHHHhhccccc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHK   24 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~   24 (140)
                      |||+||||..+..|...++.|+..
T Consensus        83 mNc~lQCl~~~~dL~~M~~~~~yl  106 (415)
T COG5533          83 MNCALQCLLSIGDLNTMLQGRFYL  106 (415)
T ss_pred             HHHHHHHHHhhhHHHHHhhhhhhh
Confidence            899999999999999988888865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
3i3t_A	355	Crystal Structure Of Covalent Ubiquitin-usp21 Compl		2e-04
3mtn_A	373	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		2e-04
2y5b_A	370	Structure Of Usp21 In Complex With Linear Diubiquit		2e-04
2ibi_A	374	Covalent Ubiquitin-Usp2 Complex Length = 374		6e-04
3nhe_A	348	High Resolution Structure (1.26a) Of Usp2a In Compl		6e-04
2hd5_A	359	Usp2 In Complex With Ubiquitin Length = 359		6e-04
3v6c_A	367	Crystal Structure Of Usp2 In Complex With Mutated U		6e-04

>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 81  YELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           Y+L ++  HSG ++  GHYT        W + +D+++ PV    V +SE Y+L Y+
Sbjct: 294 YQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 348

>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 81  YELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           Y+L ++  HSG ++  GHYT        W + +D+++ PV    V +SE Y+L Y+
Sbjct: 313 YQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 367

>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 81  YELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           Y+L ++  HSG ++  GHYT        W + +D+++ PV    V +SE Y+L Y+
Sbjct: 307 YQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 361

>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 81  YELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           Y L +V  HSG  +  GHYT Y        W   +D+ + P+  + V  S+AY+L YE
Sbjct: 310 YNLYAVSNHSGTTMG-GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 366

>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 81  YELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           Y L +V  HSG  +  GHYT Y        W   +D+ + P+  + V  S+AY+L YE
Sbjct: 284 YNLYAVSNHSGTTMG-GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 340

>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 81  YELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           Y L +V  HSG  +  GHYT Y        W   +D+ + P+  + V  S+AY+L YE
Sbjct: 284 YNLYAVSNHSGTTMG-GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 340

>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 81  YELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
           Y L +V  HSG  +  GHYT Y        W   +D+ + P+  + V  S+AY+L YE
Sbjct: 303 YNLYAVSNHSGTTMG-GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 359

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	2e-19
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	6e-04
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	1e-15
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	5e-06
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	1e-14
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	7e-05
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	2e-14
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	3e-06
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	1e-13
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	6e-13
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	2e-04
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	1e-12
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	2e-05
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	2e-10
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	9e-09
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	6e-05
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	4e-08
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	3e-04

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score = 82.3 bits (203), Expect = 2e-19
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 51  IDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYI-SQHKRW 109
           +++  Y S    +   E          D  YEL  ++ H G  ++ GHY  +      +W
Sbjct: 391 LNMKNYCSTKEKDKHSENGKV-----PDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQW 444

Query: 110 FLCDDTKIKPVGITDVLNSEAYMLVYEKK 138
           F  +D+ +  +   +VL  +AY+L Y  +
Sbjct: 445 FKFNDSMVSSISQEEVLKEQAYLLFYTIR 473

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 1   MNVILQAFSHVPLIRNFFLSTIHKCKLDQY----CFLCKIEALFNEFYNG 46
           M+ ILQ   H P      +S IH           CF C ++ + +E Y  
Sbjct: 153 MSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 202

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 71.1 bits (173), Expect = 1e-15
 Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 36  IEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNID 95
           ++ +F+   + + E                +      ++     +Y+L + I H G +  
Sbjct: 752 VDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTM 811

Query: 96  VGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEK 137
            GHY  +I +  RW + +D K+             Y+  Y++
Sbjct: 812 CGHYVCHIKKEGRWVIYNDQKV--CASEKPPKDLGYIYFYQR 851

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 43.7 bits (102), Expect = 5e-06
 Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 1   MNVILQAFSHVPLIRNFFLSTIHKCKLD-----QYCFLCKIEALFNEFYNGNVEPIDLTK 55
           +N ++Q    +P  +  ++  + K   +        F  ++  L +   +G         
Sbjct: 356 LNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPES 415

Query: 56  YRSDYCSEDED--EGVAPYEL 74
              +   E ++  +G+AP   
Sbjct: 416 GDGERVPEQKEVQDGIAPRMF 436

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 68.5 bits (167), Expect = 1e-14
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 62  SEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYI-SQHKRWFLCDDTKIKPV 120
            + E    A    +     Y+L +V+ H G +   GHY +++  +   W   DD K+  V
Sbjct: 309 VKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIV 368

Query: 121 GITDVLNSE-------AYMLVYEKKVL 140
              D+L          AY+L+Y  + +
Sbjct: 369 TPEDILRLSGGGDWHIAYVLLYGPRRV 395

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 7/62 (11%)

Query: 1  MNVILQAFSHVPLIRNFFLSTIHKCKLD-----QYCFLCKIEALFNEFYNGN--VEPIDL 53
          MN  +Q    VP +++         +              +  LF+     +  + PI L
Sbjct: 26 MNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIIL 85

Query: 54 TK 55
           +
Sbjct: 86 LQ 87

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score = 67.9 bits (166), Expect = 2e-14
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 77  EDNRYELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGITDVLNSEAYMLV 134
               Y L +V  HSG     GHYT Y        W   +D+ + P+  + V  S+AY+L 
Sbjct: 280 NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLF 338

Query: 135 YEKK 138
           YE  
Sbjct: 339 YELA 342

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 1  MNVILQAFSHVPLIRNFFLSTIHKCKLDQY-----CFLCKIEALFNEFYNGN 47
          MN ILQ  S+   +R++ L  ++   L          + +   L    +  +
Sbjct: 21 MNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSS 72

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score = 65.4 bits (159), Expect = 1e-13
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 77  EDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
               Y+L ++  HSG ++  GHYT        W + +D+++ PV    V +SE Y+L Y+
Sbjct: 290 GSPVYQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 348

Query: 137 KK 138
             
Sbjct: 349 LM 350

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score = 63.4 bits (154), Expect = 6e-13
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 75  NLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYM 132
           +     Y+L +V  H G  + VGHYT Y       +W+  DD+ +       ++   AY+
Sbjct: 294 SARPYVYDLIAVSNHYG-AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYV 352

Query: 133 LVYEKK 138
           L Y+++
Sbjct: 353 LFYQRR 358

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 1  MNVILQAFSHVPLIRNFFLSTIHKCKLDQY-------CFLCKIEALFNEFYNGNVEPIDL 53
          MN  LQ  S+   + ++FL   ++ ++++                L  + ++G    +  
Sbjct: 20 MNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAP 79

Query: 54 TKYRS 58
            +++
Sbjct: 80 RMFKT 84

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score = 62.2 bits (151), Expect = 1e-12
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%)

Query: 58  SDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDT 115
           S Y    ++             +Y L SV  H G  +D GHYT Y   +  +RWF  DD 
Sbjct: 324 SQYVIGPKNN----------LKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDH 372

Query: 116 KIKPVGITDVLNSEAYMLVYEK 137
           ++  + ++ V +S AY+L Y  
Sbjct: 373 EVSDISVSSVKSSAAYILFYTS 394

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 1   MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYN 45
           MN ILQ   + P + ++F    ++  +++   L     +  EF  
Sbjct: 74  MNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGI 118

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 11/128 (8%)

Query: 23  HKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYE 82
              +        +      E Y   V   +  K +       +       +       Y 
Sbjct: 289 EIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEE-YKKHFPPNLEKGENPSCVYN 347

Query: 83  LCSVIKHSGLNIDVGHYTTYISQHK---RWFLCDDTKIKPVGITDVLN-------SEAYM 132
           L  VI H G N + GHY  +I       +W+  +D K+  V    + +         A +
Sbjct: 348 LIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALI 407

Query: 133 LVYEKKVL 140
           L+Y+   L
Sbjct: 408 LMYKGFGL 415

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 27/98 (27%)

Query: 58  SDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDT 115
            ++  + + +         +   Y L +V+ HSG +   GHY  Y+      +W   DD 
Sbjct: 227 DEFLQKTDPK---------DPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDD 276

Query: 116 KIKPVGITDVLNSE---------------AYMLVYEKK 138
            +      + +                  AYMLVY ++
Sbjct: 277 VVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 1/69 (1%)

Query: 1  MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDY 60
          MN +LQ       +R        +           ++ +F E  + +  P+   K    +
Sbjct: 18 MNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDK-PVGTKKLTKSF 76

Query: 61 CSEDEDEGV 69
            E  D  +
Sbjct: 77 GWETLDSFM 85

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 50.0 bits (119), Expect = 4e-08
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 28/95 (29%)

Query: 71  PYELNL----------EDNRYELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIK 118
           P +L L          +   Y L +V+ HSG +   GHY  Y+      +W   DD  + 
Sbjct: 390 PEQLPLDEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVS 448

Query: 119 PVGITDVLNSE---------------AYMLVYEKK 138
                + +                  AYMLVY ++
Sbjct: 449 RCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 483

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 1   MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDY 60
           MN +LQ       +R        +           ++ +F E  + + +P+   K    +
Sbjct: 187 MNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKSF 245

Query: 61  CSEDEDEGV 69
             E  D  +
Sbjct: 246 GWETLDSFM 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.96
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.96
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.96
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.95
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.94
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.94
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.94
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.93
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.93
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.87
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	98.32
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	96.81
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	96.46
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	96.25
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	96.13
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	96.09
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	96.05
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	95.88
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	95.85
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	95.2
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	94.89
3mp2_A	211	Non-structural protein 3; papain-like protease, TG	83.56
1qmy_A	167	Protease, leader protease; hydrolase, sulfhydryl p	82.21

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.96  E-value=7.7e-30  Score=196.01  Aligned_cols=132  Identities=21%  Similarity=0.399  Sum_probs=106.1

Q ss_pred             hhcCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCC---------C-CCCCcccc
Q psy8602           7 AFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSE---------D-EDEGVAPY   72 (140)
Q Consensus         7 ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~---------~-~~~~~~~~   72 (140)
                      ..+...+|..|+..+.+..++.|.|+.|+...    .......|++++|||+||.++....         + +.+++.++
T Consensus       210 ~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~  289 (367)
T 2y6e_A          210 TVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEF  289 (367)
T ss_dssp             CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGG
T ss_pred             CCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhh
Confidence            34566788888888888777779999998632    3444568899999999997654322         2 23555665


Q ss_pred             ccCC--CCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602          73 ELNL--EDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV  139 (140)
Q Consensus        73 ~~~~--~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~  139 (140)
                      ....  .+..|+|+|||+|.| +.++|||+||+|..  +.||.|||+.|+++++++|.+.+||||||+|++
T Consensus       290 ~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~  359 (367)
T 2y6e_A          290 VCNLSARPYVYDLIAVSNHYG-AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRD  359 (367)
T ss_dssp             BSCSSSCCCEEEEEEEEEEEC-SSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECC
T ss_pred             ccCCCCCCceEEEEEEeecCC-CCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcC
Confidence            5432  467999999999999 79999999999986  499999999999999999999999999999986

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.96  E-value=9e-30  Score=193.79  Aligned_cols=131  Identities=19%  Similarity=0.341  Sum_probs=103.9

Q ss_pred             hcCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCCCCC----------CCccccc
Q psy8602           8 FSHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSEDED----------EGVAPYE   73 (140)
Q Consensus         8 l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~~~~----------~~~~~~~   73 (140)
                      .+..++|..|+..+....++.+.|+.|+...    .......|++++|||+||..+.....+.          +++.++.
T Consensus       206 ~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~  285 (355)
T 3i3t_A          206 VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFA  285 (355)
T ss_dssp             CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGB
T ss_pred             cCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhc
Confidence            3556778888888888777779999998643    2334467899999999998664333332          3444443


Q ss_pred             cC-CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602          74 LN-LEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV  139 (140)
Q Consensus        74 ~~-~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~  139 (140)
                      .. .+...|+|+|||+|.| +.++|||+||+|..+.||.|||+.|+++++++|.+.+||||||+|++
T Consensus       286 ~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~  351 (355)
T 3i3t_A          286 SDKAGSPVYQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQ  351 (355)
T ss_dssp             C----CCEEEEEEEEEEEE-ETTEEEEEEEEEETTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC-
T ss_pred             cCCCCCcceEEEEEEEecC-CCCCCeEEEEEEcCCeEEEEcCCCcEECCHHHcCCCCcEEEEEEecc
Confidence            32 2456899999999999 89999999999999999999999999999999999999999999975

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.96  E-value=5.6e-29  Score=188.93  Aligned_cols=130  Identities=21%  Similarity=0.363  Sum_probs=103.9

Q ss_pred             cCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCCCCC----------CCcccccc
Q psy8602           9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSEDED----------EGVAPYEL   74 (140)
Q Consensus         9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~~~~----------~~~~~~~~   74 (140)
                      +...+|..|+..+....++.+.|+.|+...    .......|++++|||+||..+.....+.          +++.++..
T Consensus       197 sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~  276 (348)
T 3nhe_A          197 TLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFAS  276 (348)
T ss_dssp             EHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBC
T ss_pred             CHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcC
Confidence            445678888888888777779999998643    2334568899999999997654333333          34444433


Q ss_pred             C-CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602          75 N-LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV  139 (140)
Q Consensus        75 ~-~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~  139 (140)
                      . .....|+|+|||+|.| +.++|||+||+|..  +.||.|||+.|+++++++|.+.+||||||+|++
T Consensus       277 ~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~  343 (348)
T 3nhe_A          277 ENTNHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS  343 (348)
T ss_dssp             TTCCCCEEEEEEEEEEEE-CSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC
T ss_pred             CCCCCCcEEEEEEEEccC-CCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecC
Confidence            2 3567899999999999 89999999999984  499999999999999999999999999999986

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.95  E-value=7.6e-29  Score=192.69  Aligned_cols=129  Identities=26%  Similarity=0.406  Sum_probs=104.8

Q ss_pred             CcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCC---------CC-CCCCccccccC
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCS---------ED-EDEGVAPYELN   75 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~---------~~-~~~~~~~~~~~   75 (140)
                      ...+|..|+..+.+..++.|.|+.|+..+    .......|++++|||+||..+...         .+ +.+|+.++...
T Consensus       250 L~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~  329 (396)
T 2gfo_A          250 LQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG  329 (396)
T ss_dssp             HHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCS
T ss_pred             HHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccC
Confidence            34678888888888777779999998643    344456889999999999765422         22 34666676654


Q ss_pred             C--CCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602          76 L--EDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV  139 (140)
Q Consensus        76 ~--~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~  139 (140)
                      +  ....|+|+|||+|.| ++++|||+||+|..  +.||.|||+.|+++++++|.+.+||||||+|++
T Consensus       330 ~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~  396 (396)
T 2gfo_A          330 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG  396 (396)
T ss_dssp             CCSSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred             CCCCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence            2  357899999999999 99999999999986  499999999999999999999999999999874

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.94  E-value=1.2e-27  Score=183.41  Aligned_cols=128  Identities=18%  Similarity=0.246  Sum_probs=97.9

Q ss_pred             cHHHHHHhhcccccCccccCcccchhh---hhhhhhhcCCccccccccccccCC-----------CCCCCCCccccccC-
Q psy8602          11 VPLIRNFFLSTIHKCKLDQYCFLCKIE---ALFNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAPYELN-   75 (140)
Q Consensus        11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~---~~f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~~~~~-   75 (140)
                      .++|..|+..+.+..++.|.|..|...   +.......|++++|||+||.++..           ..+..+++.++... 
T Consensus       154 ~~~L~~~~~~E~l~~~~~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~  233 (353)
T 1nb8_A          154 FESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT  233 (353)
T ss_dssp             HHHHHHHTCCEEECTTTCEECGGGCEECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSC
T ss_pred             HHHHHHhhCccccCCCccccCCcCccEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhhhccc
Confidence            456788888888877667899998653   234445688999999999976431           22334455555543 


Q ss_pred             --CCCCcEEEEEEEEeecCCCCCCeEEEEEeC--CCcEEEEcCCeeEEeccccccC---------------CCcEEEEEE
Q psy8602          76 --LEDNRYELCSVIKHSGLNIDVGHYTTYISQ--HKRWFLCDDTKIKPVGITDVLN---------------SEAYMLVYE  136 (140)
Q Consensus        76 --~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~--~~~W~~~~D~~v~~~~~~~v~~---------------~~aYiLfY~  136 (140)
                        ..+..|+|+|||+|.| +.++|||+||+|.  .+.||.|||+.|+++++++|..               .+||||||+
T Consensus       234 ~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~  312 (353)
T 1nb8_A          234 DPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYI  312 (353)
T ss_dssp             CTTSCCEEEEEEEEEEES-STTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEE
T ss_pred             CCCCCceEEEEEEEEEeC-CCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEE
Confidence              2467899999999999 7899999999996  3499999999999999988763               579999999


Q ss_pred             Eec
Q psy8602         137 KKV  139 (140)
Q Consensus       137 r~~  139 (140)
                      |++
T Consensus       313 r~~  315 (353)
T 1nb8_A          313 RES  315 (353)
T ss_dssp             ETT
T ss_pred             ECc
Confidence            975

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.94  E-value=4.2e-27  Score=186.29  Aligned_cols=129  Identities=19%  Similarity=0.360  Sum_probs=100.1

Q ss_pred             CcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccC----------CCCCCCCCccccccC
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDY----------CSEDEDEGVAPYELN   75 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~----------~~~~~~~~~~~~~~~   75 (140)
                      ...+|..|+..+.... .++.|+.|....    .......|++++|+|+||..+.          ...+..+++.++...
T Consensus       321 l~~~L~~~~~~E~l~~-~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~  399 (476)
T 3mhs_A          321 LYECLDSFHKKEQLKD-FNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCST  399 (476)
T ss_dssp             HHHHHHHHHCCEECSS-CCCEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSC
T ss_pred             HHHHHHHhcChhhccC-CCCcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCc
Confidence            3456777887777753 338999998643    2334468899999999997532          122334455555432


Q ss_pred             -----------CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC-cEEEEcCCeeEEeccccccCCCcEEEEEEEecC
Q psy8602          76 -----------LEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL  140 (140)
Q Consensus        76 -----------~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~-~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~l  140 (140)
                                 ..+..|+|+|||+|.| +.++|||++|+|..+ +||.|||+.|+++++++|...+||||||+|+++
T Consensus       400 ~~~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~  475 (476)
T 3mhs_A          400 KEKDKHSENGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQV  475 (476)
T ss_dssp             CBCCC--CCCBCCCEEEEEEEEEEEEE-CSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEEE
T ss_pred             ccccccccccCCCCCcEEEEEEEEeCC-CCCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEecC
Confidence                       2346799999999999 899999999999854 999999999999999999999999999999864

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.94  E-value=4.7e-27  Score=183.15  Aligned_cols=63  Identities=30%  Similarity=0.582  Sum_probs=58.2

Q ss_pred             CCcEEEEEEEEeecCCCCCCeEEEEEeC---CCcEEEEcCCeeEEeccccccCCC-------cEEEEEEEecC
Q psy8602          78 DNRYELCSVIKHSGLNIDVGHYTTYISQ---HKRWFLCDDTKIKPVGITDVLNSE-------AYMLVYEKKVL  140 (140)
Q Consensus        78 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~---~~~W~~~~D~~v~~~~~~~v~~~~-------aYiLfY~r~~l  140 (140)
                      +..|+|+|||+|.|.++++|||+||+|.   .+.||.|||+.|+++++++|....       ||||||+|++|
T Consensus       343 ~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~l  415 (415)
T 1vjv_A          343 SCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFGL  415 (415)
T ss_dssp             SSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETTC
T ss_pred             CceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecCC
Confidence            4789999999999977999999999999   459999999999999999998765       99999999986

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.93  E-value=4.8e-27  Score=182.09  Aligned_cols=112  Identities=18%  Similarity=0.226  Sum_probs=86.3

Q ss_pred             cCcccchhh----hhhhhhhcCCccccccccccccCC-----------CCCCCCCccccccC------------------
Q psy8602          29 QYCFLCKIE----ALFNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAPYELN------------------   75 (140)
Q Consensus        29 ~~C~~C~~~----~~f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~~~~~------------------   75 (140)
                      +.|..|...    +.......|++++|||+||.++..           ..+..+++.+|...                  
T Consensus       210 ~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~  289 (404)
T 2ayn_A          210 KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLED  289 (404)
T ss_dssp             CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC
T ss_pred             ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhc
Confidence            678888753    234445688999999999976532           12233445444321                  


Q ss_pred             ---------------------------------CCCCcEEEEEEEEeecCCCCCCeEEEEEeC-CCcEEEEcCCeeEEec
Q psy8602          76 ---------------------------------LEDNRYELCSVIKHSGLNIDVGHYTTYISQ-HKRWFLCDDTKIKPVG  121 (140)
Q Consensus        76 ---------------------------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~W~~~~D~~v~~~~  121 (140)
                                                       ..+..|+|+|||+|.|.++++|||+||+|. .+.||.|||+.|++++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~  369 (404)
T 2ayn_A          290 KKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVT  369 (404)
T ss_dssp             ----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBC
T ss_pred             ccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecC
Confidence                                             234789999999999976999999999998 6699999999999999


Q ss_pred             cccccCCC-------cEEEEEEEecC
Q psy8602         122 ITDVLNSE-------AYMLVYEKKVL  140 (140)
Q Consensus       122 ~~~v~~~~-------aYiLfY~r~~l  140 (140)
                      +++|....       ||||||+|+++
T Consensus       370 ~~~v~~~~~g~~~~~aYiLfY~r~~~  395 (404)
T 2ayn_A          370 PEDILRLSGGGDWHIAYVLLYGPRRV  395 (404)
T ss_dssp             HHHHGGGGSSSSSCEEEEEEEECC--
T ss_pred             HHHHHhhhCCCCCceEEEEEEEecCC
Confidence            99998765       99999999864

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.93  E-value=1.5e-26  Score=185.25  Aligned_cols=128  Identities=18%  Similarity=0.247  Sum_probs=100.7

Q ss_pred             cHHHHHHhhcccccCccccCcccchhhh---hhhhhhcCCccccccccccccCC-----------CCCCCCCccccccC-
Q psy8602          11 VPLIRNFFLSTIHKCKLDQYCFLCKIEA---LFNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAPYELN-   75 (140)
Q Consensus        11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~~---~f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~~~~~-   75 (140)
                      .++|..|+..+.+..++.|.|..|....   .......|++++|||+||.++..           ..+..+++.++... 
T Consensus       323 ~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~  402 (522)
T 2f1z_A          323 FESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT  402 (522)
T ss_dssp             HHHHHHHTCEEEECTTSCBCCGGGCSBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSC
T ss_pred             hHHHHHhhceeecCCcceeecCcCCccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhhhccc
Confidence            4678888888888777778999987532   34445688999999999976432           23344566666543 


Q ss_pred             --CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccC---------------CCcEEEEEE
Q psy8602          76 --LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLN---------------SEAYMLVYE  136 (140)
Q Consensus        76 --~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~---------------~~aYiLfY~  136 (140)
                        ..+..|+|+|||+|.| +.++|||+||+|..  +.||.|||+.|++++.++|..               .+||||||+
T Consensus       403 ~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~  481 (522)
T 2f1z_A          403 DPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYI  481 (522)
T ss_dssp             CTTSCCEEEEEEEEEEEC-SSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEE
T ss_pred             cCCCCcEEEEEEEEEecc-cCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEE
Confidence              2467899999999999 78999999999963  499999999999999988863               579999999


Q ss_pred             Eec
Q psy8602         137 KKV  139 (140)
Q Consensus       137 r~~  139 (140)
                      |++
T Consensus       482 r~~  484 (522)
T 2f1z_A          482 RES  484 (522)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            975

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.87  E-value=7.4e-23  Score=171.67  Aligned_cols=59  Identities=25%  Similarity=0.555  Sum_probs=53.7

Q ss_pred             CcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602          79 NRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV  139 (140)
Q Consensus        79 ~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~  139 (140)
                      ..|+|+|||+|.|.+.++|||+||+|..++||.|||+.|+++  ++.....||||||+|.+
T Consensus       795 ~~Y~L~avi~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~  853 (854)
T 3ihp_A          795 GKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA  853 (854)
T ss_dssp             SEEEEEEEEEEESSCSSCCEEEEEEEETTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred             ceEEEEEEEEeecCCCCCcCeEEEEEeCCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence            379999999999988889999999999999999999999997  45567899999999974

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=98.32  E-value=4.2e-07  Score=69.54  Aligned_cols=33  Identities=24%  Similarity=0.577  Sum_probs=28.0

Q ss_pred             CCcEEEEEEEEeecCCCCCCeEEEEEeCC---CcEEEEcCC
Q psy8602          78 DNRYELCSVIKHSGLNIDVGHYTTYISQH---KRWFLCDDT  115 (140)
Q Consensus        78 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~---~~W~~~~D~  115 (140)
                      ...|+|+|||+     +++|||+||||.+   +.|+.||-.
T Consensus       274 sg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDsm  309 (374)
T 2vhf_A          274 CQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDSM  309 (374)
T ss_dssp             -CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEETT
T ss_pred             ceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEech
Confidence            37899999999     6689999999983   399999974

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=96.81  E-value=0.00038  Score=52.77  Aligned_cols=56  Identities=16%  Similarity=0.281  Sum_probs=37.8

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCcc-------ccCcccchhhhhhhhhhcCCccccccccc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKL-------DQYCFLCKIEALFNEFYNGNVEPIDLTKY   56 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~-------~~~C~~C~~~~~f~~~~~~~~~~l~l~rf   56 (140)
                      |||+||||.++|++++++++.....+.       ...+..+.+...+..++.+....+.+..|
T Consensus        20 mNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~   82 (367)
T 2y6e_A           20 MNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF   82 (367)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence            799999999999999999876543211       12345566677777777665444444444

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=96.46  E-value=0.00074  Score=50.38  Aligned_cols=44  Identities=23%  Similarity=0.397  Sum_probs=32.8

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCcc-----ccCcccchhhhhhhhhh
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKL-----DQYCFLCKIEALFNEFY   44 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~-----~~~C~~C~~~~~f~~~~   44 (140)
                      |||+||||.++|++++++++.......     ...|..|.+...+..++
T Consensus        21 ~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~   69 (348)
T 3nhe_A           21 MNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW   69 (348)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHH
Confidence            799999999999999999886443211     24566677777777666

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=96.25  E-value=0.001  Score=51.25  Aligned_cols=56  Identities=16%  Similarity=0.213  Sum_probs=38.6

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCccc---------cCcccchhhhhhhhhhcCCccccccccc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKLD---------QYCFLCKIEALFNEFYNGNVEPIDLTKY   56 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~---------~~C~~C~~~~~f~~~~~~~~~~l~l~rf   56 (140)
                      |||+||||.++|+++++++.-.......         ..|..|.+.+.|..++......+.+..|
T Consensus        36 mNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~~  100 (415)
T 1vjv_A           36 LNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVL  100 (415)
T ss_dssp             HHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHHH
Confidence            7999999999999999998754332111         3477888888888777654334444433

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=96.13  E-value=0.0008  Score=51.81  Aligned_cols=47  Identities=17%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCcc-------ccCcccchhhhhhhhhhcCC
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKL-------DQYCFLCKIEALFNEFYNGN   47 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~-------~~~C~~C~~~~~f~~~~~~~   47 (140)
                      |||+||||.++|+|++|++......+.       ...+..+.+...+..++.+.
T Consensus        74 mNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~  127 (396)
T 2gfo_A           74 MNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ  127 (396)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC
T ss_pred             HhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC
Confidence            799999999999999999886532111       02233444555555555544

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=96.09  E-value=0.0015  Score=51.24  Aligned_cols=45  Identities=31%  Similarity=0.634  Sum_probs=35.1

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccC----ccccCcccchhhhhhhhhhc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKC----KLDQYCFLCKIEALFNEFYN   45 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~----~~~~~C~~C~~~~~f~~~~~   45 (140)
                      |||+||||.++|+++++++...+..    .....|..|.+.+.+..++.
T Consensus       153 mNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~  201 (476)
T 3mhs_A          153 MSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYG  201 (476)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhh
Confidence            7999999999999999999765431    12267888888888776655

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=96.05  E-value=0.0013  Score=49.20  Aligned_cols=47  Identities=15%  Similarity=0.246  Sum_probs=32.5

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCc----cccCcccchhhhhhhhhhcCC
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCK----LDQYCFLCKIEALFNEFYNGN   47 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~----~~~~C~~C~~~~~f~~~~~~~   47 (140)
                      |||+||||.++|++++++++......    ....|..+.+...+..++.+.
T Consensus        15 ~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~   65 (355)
T 3i3t_A           15 LNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPD   65 (355)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCS
T ss_pred             HHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCC
Confidence            79999999999999999987543211    113456666677777666543

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=95.88  E-value=0.0033  Score=47.55  Aligned_cols=45  Identities=16%  Similarity=0.163  Sum_probs=32.1

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCccccCcccchhhhhhhhhhc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYN   45 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~~~   45 (140)
                      |||+||||.++|+++.+++.-.........|..|.+.+.|..++.
T Consensus        18 mNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~   62 (353)
T 1nb8_A           18 MNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQH   62 (353)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHhh
Confidence            799999999999999998653222112245677777777766654

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=95.85  E-value=0.0013  Score=50.36  Aligned_cols=46  Identities=15%  Similarity=0.249  Sum_probs=34.1

Q ss_pred             CchhhhhhcCcHHHHHHhhccccc--Cc---cccCcccchhhhhhhhhhcC
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHK--CK---LDQYCFLCKIEALFNEFYNG   46 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~--~~---~~~~C~~C~~~~~f~~~~~~   46 (140)
                      |||+||||.++|+++.+++.-...  ..   ....|..|.+...|..++.+
T Consensus        26 mNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~   76 (404)
T 2ayn_A           26 MNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKT   76 (404)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcC
Confidence            799999999999999999875432  11   11457788888888777653

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=95.20  E-value=0.0096  Score=47.34  Aligned_cols=45  Identities=16%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCccccCcccchhhhhhhhhhc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYN   45 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~~~   45 (140)
                      |||+||||.++|+++.+++.-.........|..|.+.+.|..+..
T Consensus       187 mNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~  231 (522)
T 2f1z_A          187 MNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQH  231 (522)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHhhccccCCcccchHHHHHHHHHHHHhc
Confidence            799999999999999988653222112245667777777776654

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=94.89  E-value=0.01  Score=50.15  Aligned_cols=46  Identities=15%  Similarity=0.270  Sum_probs=34.8

Q ss_pred             CchhhhhhcCcHHHHHHhhccccc-----CccccCcccchhhhhhhhhhcC
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHK-----CKLDQYCFLCKIEALFNEFYNG   46 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~-----~~~~~~C~~C~~~~~f~~~~~~   46 (140)
                      |||+||||.++|+++.+++.....     ......|..|.+.+.+..++++
T Consensus       356 mNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~  406 (854)
T 3ihp_A          356 LNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSG  406 (854)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcc
Confidence            799999999999999999864321     1122567888888888777654

>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}

Probab=83.56  E-value=2.1  Score=30.19  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=28.1

Q ss_pred             EEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecc
Q psy8602          85 SVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGI  122 (140)
Q Consensus        85 ~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~  122 (140)
                      +-++-.| +.++|||+.+....+  +.+|...+.+++.
T Consensus       162 ~~~vF~G-~~~~GHY~~~~~~~~--~~vDG~~~~~~~~  196 (211)
T 3mp2_A          162 MHAVYTG-TTQNGHYMVDDIEHG--YCVDGMGIKPLKK  196 (211)
T ss_dssp             EEEEEES-CTTTCEEEEEETTTT--EEEETTEEECCCC
T ss_pred             eEEEEEc-CCCCceEEEEecccc--eEEeCCceeEccc
Confidence            3444489 899999999977665  8999999998863

>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R

Probab=82.21  E-value=1.5  Score=28.99  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=29.7

Q ss_pred             EEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecc
Q psy8602          82 ELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGI  122 (140)
Q Consensus        82 ~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~  122 (140)
                      +..|-|.-.|    .+|-+-++-.++.||.+||+...+-++
T Consensus       108 DfhAgIflkg----~eHAVFa~~TS~GWyaiDDe~fypwtP  144 (167)
T 1qmy_A          108 DFHAGIFLKG----QEHAVFACVTSNGWYAIDDEDFYPWTP  144 (167)
T ss_dssp             GEEEEEEEET----TTEEEEEECCTTSSEEEETTEEEECCC
T ss_pred             hhhhheeecC----CCceEEEEEccCceEEecccccccCCC
Confidence            4445554455    689999999999999999999999855

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	8e-15
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	2e-04
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	4e-14
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	2e-04
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	9e-14
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	8e-04
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	3e-12
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	0.002
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	7e-06
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	4e-05

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 8e-15
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 23  HKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDN--R 80
            +  L +         L       + +     K ++      E+  ++ Y +  ++N  +
Sbjct: 230 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK 289

Query: 81  YELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEK 137
           Y L SV  H G  +D GHYT Y   +  +RWF  DD ++  + ++ V +S AY+L Y  
Sbjct: 290 YNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 7/59 (11%)

Query: 1  MNVILQAFSHVPLIRNFFLSTIHKCKLDQ-------YCFLCKIEALFNEFYNGNVEPID 52
          MN ILQ   + P + ++F    ++  +++            +   +    + G    I 
Sbjct: 27 MNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYIS 85

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 4e-14
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 62  SEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYI-SQHKRWFLCDDTKIKPV 120
            + E    A    +     Y+L +V+ H G +   GHY +++  +   W   DD K+  V
Sbjct: 299 VKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIV 358

Query: 121 GITDVLNSE-------AYMLVYEKK 138
              D+L          AY+L+Y  +
Sbjct: 359 TPEDILRLSGGGDWHIAYVLLYGPR 383

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 2e-04
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 7/62 (11%)

Query: 1  MNVILQAFSHVPLIRNFFLSTIHKCKLD-----QYCFLCKIEALFNEFYNGN--VEPIDL 53
          MN  +Q    VP +++         +              +  LF+     +  + PI L
Sbjct: 16 MNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIIL 75

Query: 54 TK 55
           +
Sbjct: 76 LQ 77

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 9e-14
 Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 15/133 (11%)

Query: 6   QAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDE 65
           +       I+ F +    K  +           +        V          ++ SE+ 
Sbjct: 215 RCRGRKRCIKKFSIQRFPKILVLHLKR-FSESRIRTSKLTTFVNFPLRDLDLREFASENT 273

Query: 66  DEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGIT 123
           +  V           Y L +V  HSG     GHYT Y        W   +D+ + P+  +
Sbjct: 274 NHAV-----------YNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSS 321

Query: 124 DVLNSEAYMLVYE 136
            V  S+AY+L YE
Sbjct: 322 QVRTSDAYLLFYE 334

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 8e-04
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 1  MNVILQAFSHVPLIRNFFLSTIHKCKLD-----QYCFLCKIEALFNEFYNGN 47
          MN ILQ  S+   +R++ L  ++   L          + +   L    +  +
Sbjct: 15 MNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSS 66

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 3e-12
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 77  EDNRYELCSVIKHSGLNIDVGHYTTYI---SQHKRWFLCDDTKIKPVGITDVLNSE---- 129
               Y L  VI H G N + GHY  +I       +W+  +D K+  V    + +      
Sbjct: 324 PSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGE 383

Query: 130 ---AYMLVYEKKVL 140
              A +L+Y+   L
Sbjct: 384 SDSALILMYKGFGL 397

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 9/61 (14%)

Query: 1  MNVILQAFSHVPLIRNFFLSTIHKCKLDQY---------CFLCKIEALFNEFYNGNVEPI 51
          +N  LQA   V  +R+  L+      +              + +++  F    N + + +
Sbjct: 18 LNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSV 77

Query: 52 D 52
           
Sbjct: 78 L 78

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 7e-06
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 18/117 (15%)

Query: 39  LFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGH 98
           L    Y+   +       R ++  +   +         +   Y L +V+ HSG N   GH
Sbjct: 199 LMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDN-HGGH 257

Query: 99  YTTYISQ--HKRWFLCDDTKIKPVGITDVLN---------------SEAYMLVYEKK 138
           Y  Y++     +W   DD  +      + +                + AYMLVY ++
Sbjct: 258 YVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 4e-05
 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 1  MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDY 60
          MN +LQ       +R        +           ++ +F E  + + +P+   K    +
Sbjct: 18 MNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKSF 76

Query: 61 CSEDEDEG 68
            E  D  
Sbjct: 77 GWETLDSF 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.92
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.91
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.91
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.89
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.88
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	95.17
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	94.97
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	94.77
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	94.49
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	92.08
d1qmya_	156	FMDV leader protease {Foot-and-mouth disease virus	85.34

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-26  Score=174.19  Aligned_cols=128  Identities=18%  Similarity=0.251  Sum_probs=95.4

Q ss_pred             cHHHHHHhhcccccCccccCcccchhhh---hhhhhhcCCccccccccccccC-----------CCCCCCCCccccccC-
Q psy8602          11 VPLIRNFFLSTIHKCKLDQYCFLCKIEA---LFNEFYNGNVEPIDLTKYRSDY-----------CSEDEDEGVAPYELN-   75 (140)
Q Consensus        11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~~---~f~~~~~~~~~~l~l~rf~~~~-----------~~~~~~~~~~~~~~~-   75 (140)
                      ..+|..++..+.....+.+.|..|+...   .......|++++|+|+||.++.           ...++.+++.++... 
T Consensus       154 ~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~  233 (347)
T d1nbfa_         154 FESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT  233 (347)
T ss_dssp             HHHHHHHTCCEEECGGGCEECSTTCEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSC
T ss_pred             hhhHHhhcchheeccccccccccCcceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccccccccc
Confidence            4567777777777655555666665433   2333457889999999997532           223444556665433 


Q ss_pred             --CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC--cEEEEcCCeeEEeccccccC---------------CCcEEEEEE
Q psy8602          76 --LEDNRYELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLN---------------SEAYMLVYE  136 (140)
Q Consensus        76 --~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~--~W~~~~D~~v~~~~~~~v~~---------------~~aYiLfY~  136 (140)
                        .....|+|+|||+|.| +.++|||+||+|...  .|+.|||+.|+++++++|..               .+||||||+
T Consensus       234 ~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~  312 (347)
T d1nbfa_         234 DPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYI  312 (347)
T ss_dssp             CTTSCCEEEEEEEEEEEE-ETTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEE
T ss_pred             cccCccceeeEEEEEecC-CCCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEE
Confidence              2457899999999999 779999999999754  89999999999999999963               369999999


Q ss_pred             Eec
Q psy8602         137 KKV  139 (140)
Q Consensus       137 r~~  139 (140)
                      |++
T Consensus       313 r~~  315 (347)
T d1nbfa_         313 RES  315 (347)
T ss_dssp             EGG
T ss_pred             ecC
Confidence            975

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.6e-25  Score=165.79  Aligned_cols=128  Identities=26%  Similarity=0.415  Sum_probs=94.2

Q ss_pred             CcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccCCCC----------CCCCCccccccC
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYCSE----------DEDEGVAPYELN   75 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~~~----------~~~~~~~~~~~~   75 (140)
                      ...+|..|+..+.......+.|+.|.....    ......|+++.+++.+|..+....          .+..+..++...
T Consensus       203 l~~~l~~~~~~~~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (348)
T d2gfoa1         203 LQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG  282 (348)
T ss_dssp             HHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCS
T ss_pred             HHHHHHHhhhhcccccccceeccccCcceeeeEEEEEEeCCccceeceeeeeccCccceeeccccccccccccccceecC
Confidence            344556666666555445577888876432    333456778999999997654321          122233333322


Q ss_pred             --CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602          76 --LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK  138 (140)
Q Consensus        76 --~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~  138 (140)
                        .+...|+|+|||+|.| ++++|||+||+|+.  ++|+.|||+.|+++++++|.+.+||||||+|.
T Consensus       283 ~~~~~~~Y~L~avi~H~G-~~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~  348 (348)
T d2gfoa1         283 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL  348 (348)
T ss_dssp             CCSSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC
T ss_pred             CCCCCCCEEEEEEEEEeC-CCCCceEEEEEEeCCcCeEEEEECCcCeECCHHHccCCCcEEEEEEeC
Confidence              2457899999999999 99999999999965  48999999999999999999999999999983

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-24  Score=160.43  Aligned_cols=127  Identities=22%  Similarity=0.380  Sum_probs=91.3

Q ss_pred             CcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCC----------CCCCCccccccC
Q psy8602          10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSE----------DEDEGVAPYELN   75 (140)
Q Consensus        10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~----------~~~~~~~~~~~~   75 (140)
                      ....|..|+..+.......+.|..|...+    .......|+++.++++||..+....          .+..|+.++..+
T Consensus       192 l~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~~k~~~~~~~P~~l~i~~~r~~~~~~~~~~~~~~v~~~~~~~dl~~~~~~  271 (336)
T d2hd5a1         192 LMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASE  271 (336)
T ss_dssp             HHHHHHHHTSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEEECEECCSSCCEECCCCCBCCSSCEECGGGBSS
T ss_pred             HHHHHHhcCCceEecCcccccccccccceeeEEEEEEeecccchhhhhhhhhhccccccccceeEeeccccccccccccC
Confidence            33455556555555443434444443322    2333457888999999997543322          123344554432


Q ss_pred             -CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEEE
Q psy8602          76 -LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYEK  137 (140)
Q Consensus        76 -~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r  137 (140)
                       ..+.+|+|+|||+|.| +.++|||+||+|+.  ++|+.|||+.|+++++++|.+.+||||||+|
T Consensus       272 ~~~~~~Y~L~~vi~H~G-~~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiL~Y~r  335 (336)
T d2hd5a1         272 NTNHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYEL  335 (336)
T ss_dssp             SSCCCEEEEEEEEEEEE-CSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGSCCTTEEEEEEEE
T ss_pred             CCCCCeEeEEEEEEEeC-CCCCceEEEEEEcCCCCeEEEEECCceeECCHHHhccCCCEEEEEEc
Confidence             3567999999999999 89999999999965  4999999999999999999999999999998

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.3e-24  Score=160.60  Aligned_cols=61  Identities=31%  Similarity=0.631  Sum_probs=54.7

Q ss_pred             CCcEEEEEEEEeecCCCCCCeEEEEEeCC-CcEEEEcCCeeEEeccccccCC-------CcEEEEEEEe
Q psy8602          78 DNRYELCSVIKHSGLNIDVGHYTTYISQH-KRWFLCDDTKIKPVGITDVLNS-------EAYMLVYEKK  138 (140)
Q Consensus        78 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~-~~W~~~~D~~v~~~~~~~v~~~-------~aYiLfY~r~  138 (140)
                      ..+|+|+|||+|.|.++++|||+||+|.. +.|+.|||+.|+++++++|.+.       .||||||.||
T Consensus       315 ~~~Y~L~avi~H~G~s~~~GHY~a~vk~~~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~aYiLfY~r~  383 (383)
T d2ayna1         315 CGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR  383 (383)
T ss_dssp             CSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC
T ss_pred             CceEEEEEEEEEECCCCCCCCcEEEEECCCCeEEEEECCceEEeCHHHHHHhhCCCCCCceEEEEEEEC
Confidence            35799999999999779999999999965 4999999999999999999754       3999999986

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=8.2e-23  Score=153.75  Aligned_cols=64  Identities=30%  Similarity=0.585  Sum_probs=57.6

Q ss_pred             CCCcEEEEEEEEeecCCCCCCeEEEEEeCC---CcEEEEcCCeeEEeccccccC-------CCcEEEEEEEecC
Q psy8602          77 EDNRYELCSVIKHSGLNIDVGHYTTYISQH---KRWFLCDDTKIKPVGITDVLN-------SEAYMLVYEKKVL  140 (140)
Q Consensus        77 ~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~---~~W~~~~D~~v~~~~~~~v~~-------~~aYiLfY~r~~l  140 (140)
                      ....|+|+|||+|.|.++++|||+||+|+.   +.|+.|||+.|+++++++|..       .+||||||+|.+|
T Consensus       324 ~~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~~~~V~~~~~~~~~~~aYlLfY~r~~~  397 (397)
T d1vjva_         324 PSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFGL  397 (397)
T ss_dssp             SSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETTC
T ss_pred             CCCCEEEEEEEEEecCCCCCcCeEEEEECCCCCCEEEEEECCCCEECCHHHHHHhhCCCCCCeEEEEEEEecCC
Confidence            457899999999999778999999999974   489999999999999999974       3599999999987

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0039  Score=44.85  Aligned_cols=45  Identities=16%  Similarity=0.163  Sum_probs=32.5

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCccccCcccchhhhhhhhhhc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYN   45 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~~~   45 (140)
                      |||+||+|.++|+++.+++.-.........|..|.+.+.|..+..
T Consensus        18 ~NSvLQ~L~~~~~f~~~i~~~~~~~~~~~~~~~~~l~~lf~~l~~   62 (347)
T d1nbfa_          18 MNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQH   62 (347)
T ss_dssp             HHHHHHHHHTSHHHHHHHHTSCCTTCCTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHhCCccCCcccchHHHHHHHHHHHHhc
Confidence            799999999999999998765443333345666777776665543

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0019  Score=45.92  Aligned_cols=53  Identities=17%  Similarity=0.317  Sum_probs=33.8

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCccc-------cCcccchhhhhhhhhhcCCcccccc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKLD-------QYCFLCKIEALFNEFYNGNVEPIDL   53 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~-------~~C~~C~~~~~f~~~~~~~~~~l~l   53 (140)
                      |||+||+|..+|++.+++++........       ..+..+.+.+.|+.+..+....+++
T Consensus        27 lNSvLQ~L~~ip~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~~   86 (348)
T d2gfoa1          27 MNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISP   86 (348)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECC
T ss_pred             HHHHHHHHHcCHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHhCCCCcccc
Confidence            6999999999999999988655432111       2344455566666655544433433

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=0.0037  Score=44.86  Aligned_cols=48  Identities=19%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCccc---------cCcccchhhhhhhhhhcCCc
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCKLD---------QYCFLCKIEALFNEFYNGNV   48 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~---------~~C~~C~~~~~f~~~~~~~~   48 (140)
                      |||+||||.++|++++++++-.......         ..+..|.+.+.|..++..+.
T Consensus        18 ~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~   74 (397)
T d1vjva_          18 LNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSF   74 (397)
T ss_dssp             HHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-C
T ss_pred             HHHHHHHHHcCHHHHHHHHhCCcccccccccccccchHHHHHHHHHHHHHHHHhCCC
Confidence            7999999999999999987643221111         22445666666766655443

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.0044  Score=43.48  Aligned_cols=44  Identities=20%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             CchhhhhhcCcHHHHHHhhccccc-----CccccCcccchhhhhhhhhh
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHK-----CKLDQYCFLCKIEALFNEFY   44 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~-----~~~~~~C~~C~~~~~f~~~~   44 (140)
                      |||+||+|.++|+++++++.....     ......|..+.+...|..+.
T Consensus        15 lNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~   63 (336)
T d2hd5a1          15 MNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW   63 (336)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTHHHHC---CCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHhcchhhhcccCCChhHHHHHHHHHHHHHHH
Confidence            699999999999999998765432     11224566666666665554

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.018  Score=41.11  Aligned_cols=43  Identities=16%  Similarity=0.294  Sum_probs=28.3

Q ss_pred             CchhhhhhcCcHHHHHHhhcccccCc-----cccCcccchhhhhhhhh
Q psy8602           1 MNVILQAFSHVPLIRNFFLSTIHKCK-----LDQYCFLCKIEALFNEF   43 (140)
Q Consensus         1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~-----~~~~C~~C~~~~~f~~~   43 (140)
                      |||+||+|.++|+|++++++-.....     ....+..|.++..|..+
T Consensus        16 ~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l   63 (383)
T d2ayna1          16 MNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSM   63 (383)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccHHHHHHHHhhhhhccCCCccccHHHHHHHHHHHHHHH
Confidence            79999999999999999876433210     11344555556555544

>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: FMDV leader protease
domain: FMDV leader protease
species: Foot-and-mouth disease virus [TaxId: 12110]

Probab=85.34  E-value=0.36  Score=30.12  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=29.7

Q ss_pred             EEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecc
Q psy8602          82 ELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGI  122 (140)
Q Consensus        82 ~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~  122 (140)
                      +..|-|.=.|    .+|-+-++-.++.||.+||+.+.+-++
T Consensus       108 DfhAgiflkg----~eHAVFa~~TS~GWyaiDDe~fypwtP  144 (156)
T d1qmya_         108 DFHAGIFLKG----QEHAVFACVTSNGWYAIDDEDFYPWTP  144 (156)
T ss_dssp             GEEEEEEEET----TTEEEEEECCTTSSEEEETTEEEECCC
T ss_pred             hheeeeEecC----CCceEEEEEccCceEEecccccccCCC
Confidence            4445555555    689999999999999999999999865