Psyllid ID: psy863


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
MVLWCILLIIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLASKEKIESVDAKSKRSTLEQVPNGESNKEPLLHQKVQGVLFLVFLLFATAMLLFTYSYSLIVQGPESLGYYFVLNVVFGK
ccHHHHHHHcccHHHHHHcHHHHHHHHcccccEEEEEccHHHccccccccEEEEEEEEcccccHHHHHHHHHHHccccEEEEEcccEEEEEccccccccHHHHHHHHHHccccccccEEEcccccHHHHHHHHcccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccc
ccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEcccHHHHccccccccEEEEEEEcccccHHHHHHHHHHHccccEEEHccccEEEEEcccccccHHHHHHHHHHHHHHHcccccccEEEccHHHHEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEccc
MVLWCILLIIVpihvtsntRDSIRLLATYFPGYAMICGFKllgnfeangagyqltfltsddiqVSAITDLIqshvpdaslhntqssqitytlptqdtspfpaLFATLEEKKSALGISSIGIACTTIEEVFLKVGdlaskekiesvdakskrstleqvpngesnkepllhqkvQGVLFLVFLLFATAMLLFTYSYSLIvqgpeslgYYFVLNVVFGK
MVLWCILLIIVPihvtsntrDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLASKEkiesvdakskrstleqvpngesnkepllHQKVQGVLFLVFLLFATAMLLFTYSYSLIVQGPESLGYYFVLNVVFGK
MVLWCILLIIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLASKEKIESVDAKSKRSTLEQVPNGESNKEPLLHQKVQGvlflvfllfatamllftYSYSLIVQGPESLGYYFVLNVVFGK
*VLWCILLIIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVP***********ITYTLPT**TSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDL*******************************LHQKVQGVLFLVFLLFATAMLLFTYSYSLIVQGPESLGYYFVLNVVF**
MVLWCILLIIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLK***************************************VQGVLFLVFLLFATAMLLFTYSYSLIVQGPESLGYYFVLNVVFGK
MVLWCILLIIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLASKEKIESVDAKSKRSTLEQVPNGESNKEPLLHQKVQGVLFLVFLLFATAMLLFTYSYSLIVQGPESLGYYFVLNVVFGK
MVLWCILLIIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDL*****************************PLLHQKVQGVLFLVFLLFATAMLLFTYSYSLIVQGPESLGYYFVLNVVFGK
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVLWCILLIIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLASKEKIESVDAKSKRSTLEQVPNGESNKEPLLHQKVQGVLFLVFLLFATAMLLFTYSYSLIVQGPESLGYYFVLNVVFGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query216 2.2.26 [Sep-21-2011]
Q99758 1704 ATP-binding cassette sub- yes N/A 0.518 0.065 0.379 7e-16
Q8R420 1704 ATP-binding cassette sub- yes N/A 0.518 0.065 0.387 8e-16
Q8WWZ4 1543 ATP-binding cassette sub- no N/A 0.5 0.069 0.319 4e-11
Q8K442 1620 ATP-binding cassette sub- no N/A 0.462 0.061 0.330 1e-10
P41233 2261 ATP-binding cassette sub- no N/A 0.472 0.045 0.383 2e-10
Q8CF82 1642 ATP-binding cassette sub- no N/A 0.564 0.074 0.3 3e-10
Q8K448 1642 ATP-binding cassette sub- no N/A 0.564 0.074 0.292 5e-10
O94911 1581 ATP-binding cassette sub- no N/A 0.5 0.068 0.327 6e-10
Q8T6J2 1662 ABC transporter A family yes N/A 0.5 0.064 0.321 7e-10
O95477 2261 ATP-binding cassette sub- no N/A 0.425 0.040 0.4 9e-10
>sp|Q99758|ABCA3_HUMAN ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2 Back     alignment and function desciption
 Score = 84.0 bits (206), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 4/116 (3%)

Query: 21  DSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASL 80
           D I ++A    G    CG  L    +  GAGY +T +         I+ L+  HVP+A+L
Sbjct: 731 DRIAIMAK---GELQCCGSSLFLK-QKYGAGYHMTLVKEPHCNPEDISQLVHHHVPNATL 786

Query: 81  HNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDL 136
            ++  +++++ LP + T  F  LFA LE+K+  LGI+S G + TT+EEVFL+VG L
Sbjct: 787 ESSAGAELSFILPRESTHRFEGLFAKLEKKQKELGIASFGASITTMEEVFLRVGKL 842




Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.
Homo sapiens (taxid: 9606)
>sp|Q8R420|ABCA3_MOUSE ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=3 Back     alignment and function description
>sp|Q8WWZ4|ABCAA_HUMAN ATP-binding cassette sub-family A member 10 OS=Homo sapiens GN=ABCA10 PE=2 SV=3 Back     alignment and function description
>sp|Q8K442|ABC8A_MOUSE ATP-binding cassette sub-family A member 8-A OS=Mus musculus GN=Abca8a PE=2 SV=2 Back     alignment and function description
>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4 Back     alignment and function description
>sp|Q8CF82|ABCA5_RAT ATP-binding cassette sub-family A member 5 OS=Rattus norvegicus GN=Abca5 PE=2 SV=1 Back     alignment and function description
>sp|Q8K448|ABCA5_MOUSE ATP-binding cassette sub-family A member 5 OS=Mus musculus GN=Abca5 PE=1 SV=2 Back     alignment and function description
>sp|O94911|ABCA8_HUMAN ATP-binding cassette sub-family A member 8 OS=Homo sapiens GN=ABCA8 PE=1 SV=3 Back     alignment and function description
>sp|Q8T6J2|ABCA5_DICDI ABC transporter A family member 5 OS=Dictyostelium discoideum GN=abcA5 PE=3 SV=1 Back     alignment and function description
>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query216
47551267 1764 ATP-binding cassette transporter subfami 0.754 0.092 0.313 7e-18
405974925 1716 ATP-binding cassette sub-family A member 0.578 0.072 0.401 5e-17
357619167 1632 putative ATP-binding cassette sub-family 0.518 0.068 0.433 4e-16
335284527 1813 PREDICTED: ATP-binding cassette sub-fami 0.625 0.074 0.349 2e-15
166091513 1704 ATP-binding cassette sub-family A member 0.518 0.065 0.396 2e-15
440913505 1696 ATP-binding cassette sub-family A member 0.518 0.066 0.396 2e-15
334332954 1513 PREDICTED: ATP-binding cassette sub-fami 0.662 0.094 0.348 3e-15
320167955 1917 ATP-binding cassette transporter 1 [Caps 0.541 0.061 0.384 4e-15
405945282 1191 ATP-binding cassette sub-family A member 0.574 0.104 0.352 6e-15
395515887 1799 PREDICTED: ATP-binding cassette sub-fami 0.560 0.067 0.372 7e-15
>gi|47551267|ref|NP_999814.1| ATP-binding cassette transporter subfamily A [Strongylocentrotus purpuratus] gi|22218268|gb|AAM94613.1| ATP-binding cassette transporter subfamily A [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 25/188 (13%)

Query: 49  GAGYQLTFLTSDDIQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDTSPFPALFATLE 108
           G GY LT + ++ + +++I  +I++H+P+ASL +   S+I Y LP + +S F  LF  LE
Sbjct: 741 GIGYHLTLVQNEKVDMNSIQHMIKNHIPNASLESRVGSEIDYILPRESSSTFKDLFTQLE 800

Query: 109 EKKSALGISSIGIACTTIEEVFLKVGDLASKEKIESVDAKSKRSTLEQVP---------- 158
            ++  LGI S G++ TT+EEVF+KVG++  +E+        +RS+L   P          
Sbjct: 801 NERGPLGIDSFGVSVTTMEEVFMKVGEMVDEEEANGGGMMRRRSSLIPPPRPAQADPVIY 860

Query: 159 -NGESN-KEPLLHQKVQGV----------LFLVFLLFATAMLLFTYSYSLIVQGPESLGY 206
            NGE+  K+P +   + G+          +FL FL F     +F   +   ++  +S+  
Sbjct: 861 TNGEAGVKDPNVKISLFGINSGQSALVTGIFLKFLQFKA---IFIKRFLCALRDKKSVIT 917

Query: 207 YFVLNVVF 214
            F+L +VF
Sbjct: 918 QFILPIVF 925




Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|405974925|gb|EKC39537.1| ATP-binding cassette sub-family A member 3 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|357619167|gb|EHJ71844.1| putative ATP-binding cassette sub-family A member 3 [Danaus plexippus] Back     alignment and taxonomy information
>gi|335284527|ref|XP_003354628.1| PREDICTED: ATP-binding cassette sub-family A member 3-like [Sus scrofa] Back     alignment and taxonomy information
>gi|166091513|ref|NP_001107218.1| ATP-binding cassette sub-family A member 3 [Bos taurus] gi|296473435|tpg|DAA15550.1| TPA: ATP-binding cassette, sub-family A (ABC1), member 3 [Bos taurus] Back     alignment and taxonomy information
>gi|440913505|gb|ELR62954.1| ATP-binding cassette sub-family A member 3 [Bos grunniens mutus] Back     alignment and taxonomy information
>gi|334332954|ref|XP_001377117.2| PREDICTED: ATP-binding cassette sub-family A member 3-like [Monodelphis domestica] Back     alignment and taxonomy information
>gi|320167955|gb|EFW44854.1| ATP-binding cassette transporter 1 [Capsaspora owczarzaki ATCC 30864] Back     alignment and taxonomy information
>gi|405945282|gb|EKC17257.1| ATP-binding cassette sub-family A member 3 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|395515887|ref|XP_003762130.1| PREDICTED: ATP-binding cassette sub-family A member 3-like [Sarcophilus harrisii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query216
UNIPROTKB|E1BCR1 1704 ABCA3 "Uncharacterized protein 0.560 0.071 0.380 1.4e-15
UNIPROTKB|E2R3M5 1776 E2R3M5 "Uncharacterized protei 0.615 0.074 0.316 2.4e-15
ZFIN|ZDB-GENE-050517-2 1292 abca3b "ATP-binding cassette, 0.555 0.092 0.401 4.2e-15
UNIPROTKB|F1RPC9 1618 LOC100622606 "Uncharacterized 0.638 0.085 0.348 9.1e-15
UNIPROTKB|F1RFA0 1702 ABCA3 "Uncharacterized protein 0.518 0.065 0.379 9.7e-15
UNIPROTKB|H0Y3H2 1646 ABCA3 "ATP-binding cassette su 0.560 0.073 0.365 1.2e-14
UNIPROTKB|Q99758 1704 ABCA3 "ATP-binding cassette su 0.560 0.071 0.365 1.2e-14
UNIPROTKB|F1Q1F1 1702 ABCA3 "Uncharacterized protein 0.518 0.065 0.379 1.6e-14
UNIPROTKB|G3N2H7 1585 Bt.71354 "Uncharacterized prot 0.643 0.087 0.335 1.9e-14
UNIPROTKB|F1N096 1684 Bt.71354 "Uncharacterized prot 0.643 0.082 0.335 2e-14
UNIPROTKB|E1BCR1 ABCA3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 211 (79.3 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 48/126 (38%), Positives = 74/126 (58%)

Query:    21 DSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDDIQVSAITDLIQSHVPDASL 80
             D I ++A    G    CG  L    E  GAGY +T +         I+ L+Q HVP+A+L
Sbjct:   731 DRIAIMAK---GELQCCGSSLFLK-EKYGAGYHMTLVKEPHCNPEGISRLVQHHVPNATL 786

Query:    81 HNTQSSQITYTLPTQDTSPFPALFATLEEKKSALGISSIGIACTTIEEVFLKVGDLA-SK 139
              ++  +++++ LP + T  F +LFA LE+K+  LGI+S G + TT+EEVFL+VG L  S 
Sbjct:   787 ESSAGAELSFILPKESTHRFESLFAKLEKKQKELGIASFGASVTTMEEVFLRVGKLVDSS 846

Query:   140 EKIESV 145
               I+++
Sbjct:   847 MDIQAI 852




GO:0097233 "alveolar lamellar body membrane" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0005886 "plasma membrane" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0016887 "ATPase activity" evidence=IEA
UNIPROTKB|E2R3M5 E2R3M5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050517-2 abca3b "ATP-binding cassette, sub-family A (ABC1), member 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RPC9 LOC100622606 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFA0 ABCA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y3H2 ABCA3 "ATP-binding cassette sub-family A member 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q99758 ABCA3 "ATP-binding cassette sub-family A member 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q1F1 ABCA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3N2H7 Bt.71354 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1N096 Bt.71354 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
TIGR01257 2272 TIGR01257, rim_protein, retinal-specific rim ABC t 2e-09
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter Back     alignment and domain information
 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 61   DIQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQD--TSPFPALFATLEEKKSALGISS 118
            D  V+ + DL+  HVP+A L      ++ + LP ++     + +LF  LEE  + LG+SS
Sbjct: 1202 DGDVNELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSS 1261

Query: 119  IGIACTTIEEVFLKVGDLASKEKIESVDAKSKR 151
             GI+ T +EE+FLKV + A    + +  A+ KR
Sbjct: 1262 FGISDTPLEEIFLKVTEDADSGSLFAGGAQQKR 1294


This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 216
TIGR01257 2272 rim_protein retinal-specific rim ABC transporter. 99.86
KOG0059|consensus885 99.82
TIGR012572272 rim_protein retinal-specific rim ABC transporter. 99.68
COG4152300 ABC-type uncharacterized transport system, ATPase 99.46
TIGR01188302 drrA daunorubicin resistance ABC transporter ATP-b 99.32
PRK13537306 nodulation ABC transporter NodI; Provisional 99.29
PRK13536340 nodulation factor exporter subunit NodI; Provision 99.27
TIGR03522301 GldA_ABC_ATP gliding motility-associated ABC trans 99.23
COG1131293 CcmA ABC-type multidrug transport system, ATPase c 99.1
TIGR01288303 nodI ATP-binding ABC transporter family nodulation 99.1
COG4586325 ABC-type uncharacterized transport system, ATPase 99.09
COG4555245 NatA ABC-type Na+ transport system, ATPase compone 98.96
COG4175386 ProV ABC-type proline/glycine betaine transport sy 98.26
PF1373284 DUF4162: Domain of unknown function (DUF4162) 98.17
COG1124252 DppF ABC-type dipeptide/oligopeptide/nickel transp 98.16
COG1125309 OpuBA ABC-type proline/glycine betaine transport s 98.15
TIGR03265353 PhnT2 putative 2-aminoethylphosphonate ABC transpo 98.07
TIGR02314343 ABC_MetN D-methionine ABC transporter, ATP-binding 98.04
PRK09536402 btuD corrinoid ABC transporter ATPase; Reviewed 98.04
COG1127263 Ttg2A ABC-type transport system involved in resist 98.02
TIGR03258362 PhnT 2-aminoethylphosphonate ABC transport system, 98.0
PRK15093330 antimicrobial peptide ABC transporter ATP-binding 97.98
PRK13637287 cbiO cobalt transporter ATP-binding subunit; Provi 97.98
PRK11432351 fbpC ferric transporter ATP-binding subunit; Provi 97.97
TIGR03415382 ABC_choXWV_ATP choline ABC transporter, ATP-bindin 97.96
COG1123 539 ATPase components of various ABC-type transport sy 97.96
PRK13643288 cbiO cobalt transporter ATP-binding subunit; Provi 97.96
PRK13634290 cbiO cobalt transporter ATP-binding subunit; Provi 97.96
PRK11022326 dppD dipeptide transporter ATP-binding subunit; Pr 97.96
TIGR01187325 potA spermidine/putrescine ABC transporter ATP-bin 97.95
COG1135339 AbcC ABC-type metal ion transport system, ATPase c 97.94
PRK11650356 ugpC glycerol-3-phosphate transporter ATP-binding 97.93
PRK09473330 oppD oligopeptide transporter ATP-binding componen 97.93
PRK10851353 sulfate/thiosulfate transporter subunit; Provision 97.92
PRK13652277 cbiO cobalt transporter ATP-binding subunit; Provi 97.92
KOG0059|consensus 885 97.92
TIGR01186363 proV glycine betaine/L-proline transport ATP bindi 97.92
COG0444316 DppD ABC-type dipeptide/oligopeptide/nickel transp 97.9
PRK13651305 cobalt transporter ATP-binding subunit; Provisiona 97.9
PRK11153343 metN DL-methionine transporter ATP-binding subunit 97.9
PRK13647274 cbiO cobalt transporter ATP-binding subunit; Provi 97.89
COG1118345 CysA ABC-type sulfate/molybdate transport systems, 97.88
PRK11308327 dppF dipeptide transporter ATP-binding subunit; Pr 97.88
PRK13641287 cbiO cobalt transporter ATP-binding subunit; Provi 97.87
PRK11607377 potG putrescine transporter ATP-binding subunit; P 97.87
PRK13636283 cbiO cobalt transporter ATP-binding subunit; Provi 97.85
PRK15079331 oligopeptide ABC transporter ATP-binding protein O 97.85
PRK11144352 modC molybdate transporter ATP-binding protein; Pr 97.83
PRK09452375 potA putrescine/spermidine ABC transporter ATPase 97.83
PRK14268258 phosphate ABC transporter ATP-binding protein; Pro 97.83
PRK11000369 maltose/maltodextrin transporter ATP-binding prote 97.81
PRK13646286 cbiO cobalt transporter ATP-binding subunit; Provi 97.81
COG1120258 FepC ABC-type cobalamin/Fe3+-siderophores transpor 97.81
PRK09493240 glnQ glutamine ABC transporter ATP-binding protein 97.81
TIGR00972247 3a0107s01c2 phosphate ABC transporter, ATP-binding 97.79
PRK14274259 phosphate ABC transporter ATP-binding protein; Pro 97.79
PRK13631320 cbiO cobalt transporter ATP-binding subunit; Provi 97.79
PRK10070400 glycine betaine transporter ATP-binding subunit; P 97.78
TIGR02142354 modC_ABC molybdenum ABC transporter, ATP-binding p 97.77
PRK14273254 phosphate ABC transporter ATP-binding protein; Pro 97.77
PRK14257329 phosphate ABC transporter ATP-binding protein; Pro 97.76
PRK14270251 phosphate ABC transporter ATP-binding protein; Pro 97.75
PRK11264250 putative amino-acid ABC transporter ATP-binding pr 97.75
PRK03695248 vitamin B12-transporter ATPase; Provisional 97.75
cd03294269 ABC_Pro_Gly_Bertaine This family comprises the gly 97.75
PRK15177213 Vi polysaccharide export ATP-binding protein VexC; 97.75
PRK14242253 phosphate transporter ATP-binding protein; Provisi 97.74
TIGR02770230 nickel_nikD nickel import ATP-binding protein NikD 97.74
PRK14248268 phosphate ABC transporter ATP-binding protein; Pro 97.74
COG4148352 ModC ABC-type molybdate transport system, ATPase c 97.74
PRK13639275 cbiO cobalt transporter ATP-binding subunit; Provi 97.74
PRK14245250 phosphate ABC transporter ATP-binding protein; Pro 97.73
PRK14256252 phosphate ABC transporter ATP-binding protein; Pro 97.73
PRK13638271 cbiO cobalt transporter ATP-binding subunit; Provi 97.73
PRK14262250 phosphate ABC transporter ATP-binding protein; Pro 97.73
PRK14239252 phosphate transporter ATP-binding protein; Provisi 97.72
PRK10575265 iron-hydroxamate transporter ATP-binding subunit; 97.72
PRK10619257 histidine/lysine/arginine/ornithine transporter su 97.72
PRK14267253 phosphate ABC transporter ATP-binding protein; Pro 97.71
PRK10895241 lipopolysaccharide ABC transporter ATP-binding pro 97.7
PRK13645289 cbiO cobalt transporter ATP-binding subunit; Provi 97.7
TIGR01184230 ntrCD nitrate transport ATP-binding subunits C and 97.7
cd03299235 ABC_ModC_like Archeal protein closely related to M 97.7
TIGR03873256 F420-0_ABC_ATP proposed F420-0 ABC transporter, AT 97.69
PRK11831269 putative ABC transporter ATP-binding protein YrbF; 97.69
PRK10261623 glutathione transporter ATP-binding protein; Provi 97.67
PRK14253249 phosphate ABC transporter ATP-binding protein; Pro 97.67
TIGR00968237 3a0106s01 sulfate ABC transporter, ATP-binding pro 97.66
PRK14247250 phosphate ABC transporter ATP-binding protein; Pro 97.66
PRK13633280 cobalt transporter ATP-binding subunit; Provisiona 97.65
PRK15439510 autoinducer 2 ABC transporter ATP-binding protein 97.65
PRK11701258 phnK phosphonate C-P lyase system protein PhnK; Pr 97.64
PRK13546264 teichoic acids export protein ATP-binding subunit; 97.64
PRK14240250 phosphate transporter ATP-binding protein; Provisi 97.64
cd03295242 ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin 97.63
PRK14236272 phosphate transporter ATP-binding protein; Provisi 97.63
PRK10253265 iron-enterobactin transporter ATP-binding protein; 97.63
PRK13649280 cbiO cobalt transporter ATP-binding subunit; Provi 97.63
PRK11231255 fecE iron-dicitrate transporter ATP-binding subuni 97.63
PRK14237267 phosphate transporter ATP-binding protein; Provisi 97.62
TIGR02769265 nickel_nikE nickel import ATP-binding protein NikE 97.62
TIGR03005252 ectoine_ehuA ectoine/hydroxyectoine ABC transporte 97.62
PRK13644274 cbiO cobalt transporter ATP-binding subunit; Provi 97.61
PRK11288501 araG L-arabinose transporter ATP-binding protein; 97.61
PRK14275286 phosphate ABC transporter ATP-binding protein; Pro 97.61
PRK09984262 phosphonate/organophosphate ester transporter subu 97.6
PRK10418254 nikD nickel transporter ATP-binding protein NikD; 97.59
PRK13548258 hmuV hemin importer ATP-binding subunit; Provision 97.59
PRK14249251 phosphate ABC transporter ATP-binding protein; Pro 97.59
COG1137243 YhbG ABC-type (unclassified) transport system, ATP 97.59
PRK14250241 phosphate ABC transporter ATP-binding protein; Pro 97.59
COG1123539 ATPase components of various ABC-type transport sy 97.59
PRK14235267 phosphate transporter ATP-binding protein; Provisi 97.58
PRK14238271 phosphate transporter ATP-binding protein; Provisi 97.58
PRK15112267 antimicrobial peptide ABC system ATP-binding prote 97.58
PRK14251251 phosphate ABC transporter ATP-binding protein; Pro 97.58
PRK14269246 phosphate ABC transporter ATP-binding protein; Pro 97.57
COG3842352 PotA ABC-type spermidine/putrescine transport syst 97.57
PRK14272252 phosphate ABC transporter ATP-binding protein; Pro 97.57
PRK14261253 phosphate ABC transporter ATP-binding protein; Pro 97.57
PRK10762501 D-ribose transporter ATP binding protein; Provisio 97.56
PRK10744260 pstB phosphate transporter ATP-binding protein; Pr 97.56
TIGR03771223 anch_rpt_ABC anchored repeat-type ABC transporter, 97.55
PRK14258261 phosphate ABC transporter ATP-binding protein; Pro 97.55
COG1126240 GlnQ ABC-type polar amino acid transport system, A 97.55
PRK10762501 D-ribose transporter ATP binding protein; Provisio 97.55
PRK14263261 phosphate ABC transporter ATP-binding protein; Pro 97.54
PRK14243264 phosphate transporter ATP-binding protein; Provisi 97.54
PRK14252265 phosphate ABC transporter ATP-binding protein; Pro 97.54
PRK13635279 cbiO cobalt transporter ATP-binding subunit; Provi 97.53
PRK10261 623 glutathione transporter ATP-binding protein; Provi 97.52
PRK13547272 hmuV hemin importer ATP-binding subunit; Provision 97.52
PRK14246257 phosphate ABC transporter ATP-binding protein; Pro 97.52
PRK14260259 phosphate ABC transporter ATP-binding protein; Pro 97.52
TIGR02323253 CP_lyasePhnK phosphonate C-P lyase system protein 97.51
PRK15439 510 autoinducer 2 ABC transporter ATP-binding protein 97.51
PRK10419268 nikE nickel transporter ATP-binding protein NikE; 97.51
PRK09700 510 D-allose transporter ATP-binding protein; Provisio 97.5
PRK13545 549 tagH teichoic acids export protein ATP-binding sub 97.49
PRK10982491 galactose/methyl galaxtoside transporter ATP-bindi 97.49
PRK13549 506 xylose transporter ATP-binding subunit; Provisiona 97.48
COG1129500 MglA ABC-type sugar transport system, ATPase compo 97.48
PRK14266250 phosphate ABC transporter ATP-binding protein; Pro 97.48
PRK13640282 cbiO cobalt transporter ATP-binding subunit; Provi 97.48
PRK11247257 ssuB aliphatic sulfonates transport ATP-binding su 97.48
PRK14271276 phosphate ABC transporter ATP-binding protein; Pro 97.48
PRK13650279 cbiO cobalt transporter ATP-binding subunit; Provi 97.47
PRK14241258 phosphate transporter ATP-binding protein; Provisi 97.45
PRK14259269 phosphate ABC transporter ATP-binding protein; Pro 97.45
cd03289275 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic 97.45
PRK14255252 phosphate ABC transporter ATP-binding protein; Pro 97.44
PRK15134 529 microcin C ABC transporter ATP-binding protein Yej 97.43
PRK13648269 cbiO cobalt transporter ATP-binding subunit; Provi 97.42
PRK10938490 putative molybdenum transport ATP-binding protein 97.41
PRK14265274 phosphate ABC transporter ATP-binding protein; Pro 97.37
PRK13642277 cbiO cobalt transporter ATP-binding subunit; Provi 97.35
PRK14264305 phosphate ABC transporter ATP-binding protein; Pro 97.32
TIGR02633500 xylG D-xylose ABC transporter, ATP-binding protein 97.3
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 97.27
PRK14254285 phosphate ABC transporter ATP-binding protein; Pro 97.26
PRK15056272 manganese/iron transporter ATP-binding protein; Pr 97.26
PRK13632271 cbiO cobalt transporter ATP-binding subunit; Provi 97.22
COG4172 534 ABC-type uncharacterized transport system, duplica 97.2
TIGR03269520 met_CoM_red_A2 methyl coenzyme M reductase system, 97.18
COG3839338 MalK ABC-type sugar transport systems, ATPase comp 97.17
PRK11248255 tauB taurine transporter ATP-binding subunit; Prov 97.15
COG4172534 ABC-type uncharacterized transport system, duplica 97.05
PRK09544251 znuC high-affinity zinc transporter ATPase; Review 97.01
COG3638258 ABC-type phosphate/phosphonate transport system, A 96.95
PRK15064 530 ABC transporter ATP-binding protein; Provisional 96.94
PRK11288 501 araG L-arabinose transporter ATP-binding protein; 96.93
PLN03211 659 ABC transporter G-25; Provisional 96.75
PRK10636638 putative ABC transporter ATP-binding protein; Prov 96.73
PRK11819 556 putative ABC transporter ATP-binding protein; Revi 96.71
cd03291282 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic 96.7
COG4559259 ABC-type hemin transport system, ATPase component 96.64
TIGR00955 617 3a01204 The Eye Pigment Precursor Transporter (EPP 96.5
TIGR01192585 chvA glucan exporter ATP-binding protein. This mod 96.45
TIGR03719 552 ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa 96.38
COG3845 501 ABC-type uncharacterized transport systems, ATPase 96.35
COG1121254 ZnuC ABC-type Mn/Zn transport systems, ATPase comp 96.34
COG1117253 PstB ABC-type phosphate transport system, ATPase c 96.3
COG1116248 TauB ABC-type nitrate/sulfonate/bicarbonate transp 96.27
PRK11819556 putative ABC transporter ATP-binding protein; Revi 96.26
PRK10789569 putative multidrug transporter membrane\ATP-bindin 96.2
PRK10535 648 macrolide transporter ATP-binding /permease protei 96.13
cd03237246 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o 96.11
TIGR03719552 ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa 96.1
COG4988559 CydD ABC-type transport system involved in cytochr 96.08
PRK00349 943 uvrA excinuclease ABC subunit A; Reviewed 96.02
cd03236255 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o 96.01
TIGR00630 924 uvra excinuclease ABC, A subunit. This family is b 95.95
PRK11147 635 ABC transporter ATPase component; Reviewed 95.93
PRK00349943 uvrA excinuclease ABC subunit A; Reviewed 95.89
PRK10790592 putative multidrug transporter membrane\ATP-bindin 95.85
PLN03073 718 ABC transporter F family; Provisional 95.82
PLN032321495 ABC transporter C family member; Provisional 95.75
PRK10636 638 putative ABC transporter ATP-binding protein; Prov 95.72
PLN031301622 ABC transporter C family member; Provisional 95.65
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 95.62
PLN03140 1470 ABC transporter G family member; Provisional 95.58
PRK11174588 cysteine/glutathione ABC transporter membrane/ATP- 95.44
PRK13657588 cyclic beta-1,2-glucan ABC transporter; Provisiona 95.36
TIGR00956 1394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 95.26
PTZ002431560 ABC transporter; Provisional 95.16
COG4604252 CeuD ABC-type enterochelin transport system, ATPas 95.02
PRK00635 1809 excinuclease ABC subunit A; Provisional 95.01
PRK13409590 putative ATPase RIL; Provisional 94.88
TIGR012711490 CFTR_protein cystic fibrosis transmembrane conduct 94.82
PLN03140 1470 ABC transporter G family member; Provisional 94.75
TIGR01271 1490 CFTR_protein cystic fibrosis transmembrane conduct 94.66
KOG0054|consensus 1381 94.39
TIGR00956 1394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 94.38
PRK11147635 ABC transporter ATPase component; Reviewed 94.36
TIGR00957 1522 MRP_assoc_pro multi drug resistance-associated pro 94.22
COG4107258 PhnK ABC-type phosphonate transport system, ATPase 94.2
COG1101263 PhnK ABC-type uncharacterized transport system, AT 94.09
KOG0055|consensus 1228 94.03
PTZ00243 1560 ABC transporter; Provisional 93.59
COG4598256 HisP ABC-type histidine transport system, ATPase c 93.36
cd03285222 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS 93.25
PRK00635 1809 excinuclease ABC subunit A; Provisional 93.09
PRK07721438 fliI flagellum-specific ATP synthase; Validated 92.52
PLN03130 1622 ABC transporter C family member; Provisional 92.3
COG4138248 BtuD ABC-type cobalamin transport system, ATPase c 92.18
PLN03232 1495 ABC transporter C family member; Provisional 92.17
cd03280200 ABC_MutS2 MutS2 homologs in bacteria and eukaryote 91.74
PRK13409 590 putative ATPase RIL; Provisional 91.72
COG4167267 SapF ABC-type antimicrobial peptide transport syst 91.13
PTZ00265 1466 multidrug resistance protein (mdr1); Provisional 90.39
KOG0058|consensus716 90.09
KOG0054|consensus1381 88.77
cd03243202 ABC_MutS_homologs The MutS protein initiates DNA m 88.61
COG0396251 sufC Cysteine desulfurase activator ATPase [Posttr 88.04
COG4525259 TauB ABC-type taurine transport system, ATPase com 86.95
KOG0057|consensus591 86.6
cd03284216 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr 86.45
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 82.89
COG4170330 SapD ABC-type antimicrobial peptide transport syst 82.53
TIGR03864236 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, 80.66
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
Probab=99.86  E-value=7.8e-21  Score=189.85  Aligned_cols=136  Identities=32%  Similarity=0.489  Sum_probs=121.1

Q ss_pred             hhhhhHH-------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccCceEEEEEEECCc-------------
Q psy863            2 VLWCILL-------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANGAGYQLTFLTSDD-------------   61 (216)
Q Consensus         2 ~iw~lI~-------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~~~~~l~~~~~~~-------------   61 (216)
                      .+|++|+       ||+|||+|+|++.+||||++|++|++++.|++.+| |+++|.+|.+++...+.             
T Consensus      1099 ~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L-k~~~g~gy~l~~~~~~~~~~~~~~~~~~~~ 1177 (2272)
T TIGR01257      1099 SIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL-KNCFGTGFYLTLVRKMKNIQSQRGGCEGTC 1177 (2272)
T ss_pred             HHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH-HHhcCCcEEEEEEecccccccccccccccc
Confidence            5788887       99999999999999999999999999999999999 99999999999865420             


Q ss_pred             -------------------------cCHHHHHHHHHhhCCCcEEeeecCcEEEEEecCCCC--CcHHHHHHHHHhhhhhC
Q psy863           62 -------------------------IQVSAITDLIQSHVPDASLHNTQSSQITYTLPTQDT--SPFPALFATLEEKKSAL  114 (216)
Q Consensus        62 -------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~  114 (216)
                                               .+.+.+.+++++++|++...+..+.++.+.+|.+..  ..++.+++.|++...++
T Consensus      1178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~~~~g~el~y~LP~~~~~~~~f~~lf~~Le~~~~~l 1257 (2272)
T TIGR01257      1178 SCTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADL 1257 (2272)
T ss_pred             cccccccccccccccccccccccccccHHHHHHHHHHhCCCcEEEeccCCEEEEEecccccccchHHHHHHHHHhhHhhC
Confidence                                     135668888999999999999999999999998764  35899999999888899


Q ss_pred             CcceEEeecCCHHHHHHhhccccc
Q psy863          115 GISSIGIACTTIEEVFLKVGDLAS  138 (216)
Q Consensus       115 ~i~~~~~~~~sLEdvFl~l~~~~~  138 (216)
                      +|.+|.++.+||||||+++.++.+
T Consensus      1258 gi~sygis~tTLEeVFlkv~~~~~ 1281 (2272)
T TIGR01257      1258 GLSSFGISDTPLEEIFLKVTEDAD 1281 (2272)
T ss_pred             CCceEEeecCCHHHHHHHhhhhcc
Confidence            999999999999999999987654



This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>KOG0059|consensus Back     alignment and domain information
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit Back     alignment and domain information
>PRK13537 nodulation ABC transporter NodI; Provisional Back     alignment and domain information
>PRK13536 nodulation factor exporter subunit NodI; Provisional Back     alignment and domain information
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA Back     alignment and domain information
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI Back     alignment and domain information
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PF13732 DUF4162: Domain of unknown function (DUF4162) Back     alignment and domain information
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed Back     alignment and domain information
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT Back     alignment and domain information
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit Back     alignment and domain information
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional Back     alignment and domain information
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional Back     alignment and domain information
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>KOG0059|consensus Back     alignment and domain information
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit Back     alignment and domain information
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13651 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional Back     alignment and domain information
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed Back     alignment and domain information
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional Back     alignment and domain information
>PRK03695 vitamin B12-transporter ATPase; Provisional Back     alignment and domain information
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea Back     alignment and domain information
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional Back     alignment and domain information
>PRK14242 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD Back     alignment and domain information
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14239 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional Back     alignment and domain information
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D Back     alignment and domain information
>cd03299 ABC_ModC_like Archeal protein closely related to ModC Back     alignment and domain information
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional Back     alignment and domain information
>PRK10261 glutathione transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13633 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional Back     alignment and domain information
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional Back     alignment and domain information
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14240 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment Back     alignment and domain information
>PRK14236 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14237 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE Back     alignment and domain information
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional Back     alignment and domain information
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional Back     alignment and domain information
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>PRK14235 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14238 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional Back     alignment and domain information
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10762 D-ribose transporter ATP binding protein; Provisional Back     alignment and domain information
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit Back     alignment and domain information
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10762 D-ribose transporter ATP binding protein; Provisional Back     alignment and domain information
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14243 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10261 glutathione transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK Back     alignment and domain information
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional Back     alignment and domain information
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional Back     alignment and domain information
>PRK09700 D-allose transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13549 xylose transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14241 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 Back     alignment and domain information
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional Back     alignment and domain information
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional Back     alignment and domain information
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] Back     alignment and domain information
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 Back     alignment and domain information
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] Back     alignment and domain information
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed Back     alignment and domain information
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15064 ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional Back     alignment and domain information
>PLN03211 ABC transporter G-25; Provisional Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 Back     alignment and domain information
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein Back     alignment and domain information
>TIGR01192 chvA glucan exporter ATP-binding protein Back     alignment and domain information
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family Back     alignment and domain information
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] Back     alignment and domain information
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional Back     alignment and domain information
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor Back     alignment and domain information
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family Back     alignment and domain information
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed Back     alignment and domain information
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor Back     alignment and domain information
>TIGR00630 uvra excinuclease ABC, A subunit Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed Back     alignment and domain information
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>PLN03073 ABC transporter F family; Provisional Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>PTZ00243 ABC transporter; Provisional Back     alignment and domain information
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK00635 excinuclease ABC subunit A; Provisional Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>KOG0054|consensus Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) Back     alignment and domain information
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>KOG0055|consensus Back     alignment and domain information
>PTZ00243 ABC transporter; Provisional Back     alignment and domain information
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes Back     alignment and domain information
>PRK00635 excinuclease ABC subunit A; Provisional Back     alignment and domain information
>PRK07721 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes Back     alignment and domain information
>PRK13409 putative ATPase RIL; Provisional Back     alignment and domain information
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>KOG0058|consensus Back     alignment and domain information
>KOG0054|consensus Back     alignment and domain information
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch Back     alignment and domain information
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0057|consensus Back     alignment and domain information
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query216
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 98.27
3fvq_A359 Fe(3+) IONS import ATP-binding protein FBPC; nucle 98.26
3tui_C366 Methionine import ATP-binding protein METN; ABC-tr 98.22
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 98.22
1b0u_A262 Histidine permease; ABC transporter, transport pro 98.16
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 98.13
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 98.13
1oxx_K353 GLCV, glucose, ABC transporter, ATP binding protei 98.11
1z47_A355 CYSA, putative ABC-transporter ATP-binding protein 98.11
2yyz_A359 Sugar ABC transporter, ATP-binding protein; sugar 98.11
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 98.1
1vpl_A256 ABC transporter, ATP-binding protein; TM0544, stru 98.1
2it1_A362 362AA long hypothetical maltose/maltodextrin trans 98.08
1g29_1372 MALK, maltose transport protein MALK; ATPase, acti 98.08
1v43_A372 Sugar-binding transport ATP-binding protein; ATPas 98.06
3d31_A348 Sulfate/molybdate ABC transporter, ATP-binding pro 98.06
1g6h_A257 High-affinity branched-chain amino acid transport 98.0
2qi9_C249 Vitamin B12 import ATP-binding protein BTUD; inner 97.96
2ihy_A279 ABC transporter, ATP-binding protein; ATPase, ABC 97.91
2yz2_A266 Putative ABC transporter ATP-binding protein TM_0; 97.9
2pjz_A263 Hypothetical protein ST1066; ATP binding protein, 97.83
3nh6_A306 ATP-binding cassette SUB-family B member 6, mitoc; 97.8
2nq2_C253 Hypothetical ABC transporter ATP-binding protein H 97.73
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 97.73
2ixe_A271 Antigen peptide transporter 1; ABC ATPase, hydrola 97.72
2ghi_A260 Transport protein; multidrug resistance protein, M 97.64
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 97.64
3gd7_A390 Fusion complex of cystic fibrosis transmembrane co 97.53
2yl4_A595 ATP-binding cassette SUB-family B member 10, mitoc 97.38
3ux8_A670 Excinuclease ABC, A subunit; UVRA, nucleotide exci 97.38
3j16_B608 RLI1P; ribosome recycling, translation, eukarya, r 97.35
2bbs_A290 Cystic fibrosis transmembrane conductance regulato 97.29
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 97.26
3qf4_B598 Uncharacterized ABC transporter ATP-binding prote 97.23
3qf4_A587 ABC transporter, ATP-binding protein; multidrug tr 97.18
2vf7_A842 UVRA2, excinuclease ABC, subunit A.; DNA-binding p 97.07
1yqt_A538 RNAse L inhibitor; ATP-binding cassette, ribosome 97.03
3ux8_A 670 Excinuclease ABC, A subunit; UVRA, nucleotide exci 96.94
3g5u_A1284 MCG1178, multidrug resistance protein 1A; P-glycop 96.91
2r6f_A972 Excinuclease ABC subunit A; UVRA, nucleotide excis 96.89
3bk7_A607 ABC transporter ATP-binding protein; ABC ATPase, i 96.8
2ygr_A993 Uvrabc system protein A; hydrolase, nucleotide exc 96.75
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 96.74
3ozx_A538 RNAse L inhibitor; ATP binding cassette protein, h 96.53
2r6f_A 972 Excinuclease ABC subunit A; UVRA, nucleotide excis 96.51
3pih_A 916 Uvrabc system protein A; hydrolase, ABC ATPase, DN 96.45
4f4c_A1321 Multidrug resistance protein PGP-1; ABC transporte 96.34
3g5u_A 1284 MCG1178, multidrug resistance protein 1A; P-glycop 95.9
2vf7_A 842 UVRA2, excinuclease ABC, subunit A.; DNA-binding p 95.88
2ygr_A 993 Uvrabc system protein A; hydrolase, nucleotide exc 95.82
4f4c_A 1321 Multidrug resistance protein PGP-1; ABC transporte 95.43
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 95.16
3j16_B 608 RLI1P; ribosome recycling, translation, eukarya, r 94.8
2obl_A347 ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O 94.73
3ozx_A 538 RNAse L inhibitor; ATP binding cassette protein, h 94.51
1yqt_A 538 RNAse L inhibitor; ATP-binding cassette, ribosome 94.44
2npi_A460 Protein CLP1; CLP1-PCF11 complex, ATP binding, ter 94.24
3bk7_A 607 ABC transporter ATP-binding protein; ABC ATPase, i 94.03
4aby_A415 DNA repair protein RECN; hydrolase, double strand 93.58
1tf7_A 525 KAIC; homohexamer, hexamer, circadian clock protei 92.41
3thx_A934 DNA mismatch repair protein MSH2; ABC family ATPas 91.68
2dpy_A438 FLII, flagellum-specific ATP synthase; beta barrel 91.07
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 89.76
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 89.71
4ad8_A517 DNA repair protein RECN; DNA binding protein, ATPa 89.5
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 89.21
2o8b_B1022 DNA mismatch repair protein MSH6; DNA damage respo 89.0
4a74_A231 DNA repair and recombination protein RADA; hydrola 87.12
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 86.88
3b5x_A582 Lipid A export ATP-binding/permease protein MSBA; 84.24
3pih_A916 Uvrabc system protein A; hydrolase, ABC ATPase, DN 84.09
3b60_A582 Lipid A export ATP-binding/permease protein MSBA; 83.87
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 81.16
3arc_K37 Photosystem II reaction center protein K; PSII, me 81.12
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
Probab=98.27  E-value=3.9e-07  Score=74.65  Aligned_cols=35  Identities=11%  Similarity=0.024  Sum_probs=34.3

Q ss_pred             hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccc
Q psy863            9 IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLG   43 (216)
Q Consensus         9 IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L   43 (216)
                      ||++||++++++.+|||+++|++|++++.|+++++
T Consensus       201 vi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~  235 (266)
T 4g1u_C          201 VCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV  235 (266)
T ss_dssp             EEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             EEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999999999999999999999999999988



>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Back     alignment and structure
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Back     alignment and structure
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Back     alignment and structure
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Back     alignment and structure
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Back     alignment and structure
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Back     alignment and structure
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Back     alignment and structure
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Back     alignment and structure
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Back     alignment and structure
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Back     alignment and structure
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Back     alignment and structure
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Back     alignment and structure
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Back     alignment and structure
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Back     alignment and structure
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Back     alignment and structure
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Back     alignment and structure
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Back     alignment and structure
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Back     alignment and structure
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} Back     alignment and structure
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Back     alignment and structure
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Back     alignment and structure
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Back     alignment and structure
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Back     alignment and structure
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query216
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 98.99
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 98.77
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 98.73
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 98.72
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 98.18
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 97.95
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 95.0
d2axtk137 Photosystem II reaction center protein K, PsbK {Th 86.28
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]
Probab=98.99  E-value=5.4e-11  Score=94.28  Aligned_cols=47  Identities=19%  Similarity=-0.020  Sum_probs=43.8

Q ss_pred             hhhhhHH--------hhhcCCChhHHHhhhceEEEeeCCEEEEEeccccccccccC
Q psy863            2 VLWCILL--------IIVPIHVTSNTRDSIRLLATYFPGYAMICGFKLLGNFEANG   49 (216)
Q Consensus         2 ~iw~lI~--------IilSTH~L~EaE~lcDrI~Il~~G~li~~Gs~~~L~k~~~~   49 (216)
                      ++|++|+        ||+|||+|+|++.+||||++|++|+++++|+++++ +++++
T Consensus       171 ~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el-~~~~~  225 (238)
T d1vpla_         171 EVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL-KERYK  225 (238)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH-HHHTT
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH-HhccC
Confidence            5788887        99999999999999999999999999999999999 87765



>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure