Psyllid ID: psy8674

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
DLDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNRY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccEEEEEEEEEEEccccEEEEcccccccEEEEEEEEEEEEEEEccHHHHHcccccccccccccccccEEEEEHHHHHHHcccccccccccccEEEEEEEEEEEccEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHccccccccHHHHcEEEEEEcccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHccccccccccEEEEEcccccccccccccccccccccccEEEEEEEEEEcccccEEEEcccccccEEEEEEEEEEEEEEcccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccEEEEEcccccHHHHHHHHcHHHccccEEEEEccccHcccccHHHHHHHHHccccEEEEEEEEEEccccEEEEcccccccccEccEcEEEEEEEccccHHHHHcccccccccccccccccHEHEcHHHHHHHccccccccEEccccEEEEEEEEEcccEEEEEEccccEEEEcccccccccccccccccccHccccccccccccccHHHHHHHHHHHHHHcccEEEcHcccccccccccccHHHccccccccccccEEEEEEccHHHHHHHHHHHHHHHccHHHHHHHEEEEcccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHcHHHccccEEEEEccccHcccccHHHHHHHHHccccEEEEEEEEEEccccEEEEccccccccEEccEccEEEEEEccccHHHHHccccccc
Coil and Loop (DISEMBL)
DLDKKLEDYIERFNGKVRLIRNTEreglirtrsrgakesrgEVIVFLDAHCEvglnwlppllapiysdrkimtvpvidgidyqtwefrsvyepdhhyrgifewgmlykenelpereakkrkynsepykspthagglfAMDRAFFLElggydpgllvwggenfELSFKIWMCggsiewvpcsrivslirpvfkadgklgnlepplepykegpgeggkayhlpeayraagdaslgeygmnmetsnhisfdrtipdlrmeeckywdypldlpkASVILVFHNEGFSSLMRTVHSIIKrtpaqyleeiilvddfsskadlDQKLEDYIQRFNGKVRLIRNTEreglirtrsrgakesrgEVIVFLDAHCEvglnwlppllapiysdrkimtvpvidgidyqtwefrsvyepdhhyrgifewgmlykenelpereakkrkynry
Flexible Loop (DISEMBL)
dldkkledyierfngkvrlirntereglirtrsrgakesrgeVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKkrkynsepykspthagGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFkadgklgnlepplePYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIqrfngkvrlirntereglirtrsrgakesrgeVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEwgmlykenelpereakkrkynry
Low Complexity Region (SEG)
DLDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFKADGKLGNlepplepykegpgeggkAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNRY
Disordered region (IsUnstruct)
********YIERFNGKVRLIRNT*****************GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYK************************AGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFKADGKL**********************************LGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLI**********RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYK*****************
Disordered Region (DISOPRED)
DLDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP**********SEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP************
Disordered Region (DISEMBL)
DLDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPER**********
Disordered Region (DISPRO)
DLDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFKADGKLGNLEPPLEP*KEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DLDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	439	2.2.26 [Sep-21-2011]
Q8MV48	591	N-acetylgalactosaminyltra	yes	N/A	0.569	0.423	0.616	2e-87
O61397	601	Probable N-acetylgalactos	yes	N/A	0.548	0.400	0.569	1e-75
Q9R0C5	657	N-acetylgalactosaminyltra	yes	N/A	0.560	0.374	0.509	7e-64
Q80VA0	657	N-acetylgalactosaminyltra	yes	N/A	0.560	0.374	0.509	2e-63
Q86SF2	657	N-acetylgalactosaminyltra	yes	N/A	0.560	0.374	0.501	5e-62
Q5RFJ6	657	N-acetylgalactosaminyltra	yes	N/A	0.560	0.374	0.501	5e-62
Q49A17	601	Polypeptide N-acetylgalac	no	N/A	0.496	0.362	0.475	2e-51
Q07537	559	Polypeptide N-acetylgalac	no	N/A	0.535	0.420	0.439	1e-49
Q29121	559	Polypeptide N-acetylgalac	no	N/A	0.535	0.420	0.439	2e-49
Q10472	559	Polypeptide N-acetylgalac	no	N/A	0.535	0.420	0.430	5e-49

>sp|Q8MV48|GALT7_DROME N-acetylgalactosaminyltransferase 7 OS=Drosophila melanogaster GN=GalNAc-T2 PE=2 SV=2

 Score =  323 bits (827), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/250 (61%), Positives = 190/250 (76%)

Query: 188 RPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISF 247
           R V K    LGN EP     + GPGE G+A+ L    +   DAS  EYGMN+  S+ IS 
Sbjct: 61  REVPKLVDGLGNFEPKDVKPRSGPGENGEAHSLSPDKKHMSDASEMEYGMNIACSDEISM 120

Query: 248 DRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILV 307
            R++ D R+EEC++WDYP DLP+ SVI+VFHNEGFS LMRTVHS+I R+P   L EIILV
Sbjct: 121 HRSVRDTRLEECRHWDYPFDLPRTSVIIVFHNEGFSVLMRTVHSVIDRSPTHMLHEIILV 180

Query: 308 DDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEV 367
           DDFS K +L  +L++Y+ +F G V++IRN EREGLIRTRSRGA E+ GEVIVFLDAHCEV
Sbjct: 181 DDFSDKENLRSQLDEYVLQFKGLVKVIRNKEREGLIRTRSRGAMEATGEVIVFLDAHCEV 240

Query: 368 GLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP 427
             NWLPPLLAPIY DR +MTVP+IDGID++ +E+R VY  D+H+RGIFEWGMLYKENE+P
Sbjct: 241 NTNWLPPLLAPIYRDRTVMTVPIIDGIDHKNFEYRPVYGTDNHFRGIFEWGMLYKENEVP 300

Query: 428 EREAKKRKYN 437
            RE ++R +N
Sbjct: 301 RREQRRRAHN 310

Glycopeptide transferase involved in O-linked oligosaccharide biosynthesis, which catalyzes the transfer of an N-acetyl-D-galactosamine residue to an already glycosylated peptide. In contrast to other proteins of the family, it does not act as a peptide transferase that transfers GalNAc onto serine or threonine residue on the protein receptor, but instead requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. Some peptide transferase activity is however not excluded, considering that its appropriate peptide substrate may remain unidentified. Prefers the monoglycosylated Muc5AC-3 as substrate.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp|O61397|GALT7_CAEEL Probable N-acetylgalactosaminyltransferase 7 OS=Caenorhabditis elegans GN=gly-7 PE=2 SV=1

 Score =  284 bits (726), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 140/246 (56%), Positives = 181/246 (73%), Gaps = 5/246 (2%)

Query: 196 KLGNLEP--PLEPYKEGPGEGGKAYHLP-EAYRAAGDASLGEYGMNMETSNHISFDRTIP 252
           +LGN EP  P  P  + PGE GK   +  E   AAG A+  E+G N   S+ IS +RTIP
Sbjct: 81  ELGNYEPKEPEIPSNQ-PGEHGKPVPVTDEEGMAAGRAAEKEFGFNTYVSDMISMNRTIP 139

Query: 253 DLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS 312
           D+R EECK+WDYP  LP  SV++VFHNEG++ L+RTVHS++ R+P + +E++++VDD S 
Sbjct: 140 DIRPEECKHWDYPEKLPTVSVVVVFHNEGWTPLLRTVHSVLLRSPPELIEQVVMVDDDSD 199

Query: 313 KADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWL 372
           K  L +KL+ Y+ RFNGKV ++R  +REGLI  RS GAK S GEV++FLDAHCEV  NWL
Sbjct: 200 KPHLKEKLDKYVTRFNGKVIVVRTEQREGLINARSIGAKHSTGEVVLFLDAHCEVNTNWL 259

Query: 373 PPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVY-EPDHHYRGIFEWGMLYKENELPEREA 431
           PPLLAPI  +RK+MTVPVIDGID  +WE+RSVY  P+ H+ GIFEWG+LYKE ++ ERE 
Sbjct: 260 PPLLAPIKRNRKVMTVPVIDGIDSNSWEYRSVYGSPNAHHSGIFEWGLLYKETQITERET 319

Query: 432 KKRKYN 437
             RK+N
Sbjct: 320 AHRKHN 325

Probable glycopeptide transferase involved in O-linked oligosaccharide biosynthesis. Glycopeptide transferases catalyze the transfer of an N-acetyl-D-galactosamine residue to an already glycosylated peptide (By similarity). In contrast to other members of the family, it does not act as a peptide transferase that transfers GalNAc onto serine or threonine residue on peptides that have been tested. Some peptide transferase activity is however not excluded, considering that its appropriate peptide substrate may remain unidentified.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9R0C5|GALT7_RAT N-acetylgalactosaminyltransferase 7 OS=Rattus norvegicus GN=Galnt7 PE=2 SV=1

 Score =  244 bits (624), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 129/253 (50%), Positives = 175/253 (69%), Gaps = 7/253 (2%)

Query: 189 PVFKADGKLGNLEPP-LEPYK--EGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHI 245
           PV +  G LGN EP   EP+    GPGE  K   L   Y+ A  AS+ E+G NM  S+ I
Sbjct: 125 PVLRP-GVLGNFEPKEPEPHGVVGGPGENAKPLVLGPEYKQAAQASIKEFGFNMAASDMI 183

Query: 246 SFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEII 305
           S DR++ DLR EECKYW Y  +L  +SV++VFHNEG+S+LMRTVHS+IKRTP +YL EI+
Sbjct: 184 SLDRSVNDLRQEECKYWHYDENLLTSSVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIV 243

Query: 306 LVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR-GEVIVFLDAH 364
           L+DDFS+K  L +KL +YI+ +NG V++ RN  REGLI+ RS GA++++ G+V+++LDAH
Sbjct: 244 LIDDFSNKEHLKEKLTEYIKLWNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAH 303

Query: 365 CEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEF--RSVYEPDHHYRGIFEWGMLYK 422
           CEV +NW  PL+API  DR I TVP+ID I+  T+E   +   + D + RG ++W ML+K
Sbjct: 304 CEVAVNWYAPLVAPISKDRTICTVPIIDVINGNTYEIIPQGGGDEDGYARGAWDWSMLWK 363

Query: 423 ENELPEREAKKRK 435
              L  RE + RK
Sbjct: 364 RVPLTPREKRLRK 376

Glycopeptide transferase involved in O-linked oligosaccharide biosynthesis, which catalyzes the transfer of an N-acetyl-D-galactosamine residue to an already glycosylated peptide. In contrast to other proteins of the family, it does not act as a peptide transferase that transfers GalNAc onto serine or threonine residue on the protein receptor, but instead requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. Some peptide transferase activity is however not excluded, considering that its appropriate peptide substrate may remain unidentified.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q80VA0|GALT7_MOUSE N-acetylgalactosaminyltransferase 7 OS=Mus musculus GN=Galnt7 PE=2 SV=2

 Score =  243 bits (620), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/253 (50%), Positives = 175/253 (69%), Gaps = 7/253 (2%)

Query: 189 PVFKADGKLGNLEPP-LEPYK--EGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHI 245
           PV +  G LGN EP   EP+    GPGE  K   L   Y+ A  AS+ E+G NM  S+ I
Sbjct: 125 PVLRP-GVLGNFEPKEPEPHGVVGGPGEKAKPLVLGPEYKQAVQASIKEFGFNMVASDMI 183

Query: 246 SFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEII 305
           S DR++ DLR EECKYW Y  +L  +SV++VFHNEG+S+LMRTVHS+IKRTP +YL EI+
Sbjct: 184 SLDRSVNDLRQEECKYWHYDENLLTSSVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIV 243

Query: 306 LVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR-GEVIVFLDAH 364
           L+DDFS+K  L +KL++YI+ +NG V++ RN  REGLI+ RS GA++++ G+V+++LDAH
Sbjct: 244 LIDDFSNKEHLKEKLDEYIKLWNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAH 303

Query: 365 CEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEF--RSVYEPDHHYRGIFEWGMLYK 422
           CEV +NW  PL+API  DR I TVP+ID I   T+E   +   + D + RG ++W ML+K
Sbjct: 304 CEVAVNWYAPLVAPISKDRTICTVPIIDVISGNTYEIIPQGGGDEDGYARGAWDWSMLWK 363

Query: 423 ENELPEREAKKRK 435
              L  RE + RK
Sbjct: 364 RVPLTSREKRLRK 376

Glycopeptide transferase involved in O-linked oligosaccharide biosynthesis, which catalyzes the transfer of an N-acetyl-D-galactosamine residue to an already glycosylated peptide. In contrast to other proteins of the family, it does not act as a peptide transferase that transfers GalNAc onto serine or threonine residue on the protein receptor, but instead requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. Some peptide transferase activity is however not excluded, considering that its appropriate peptide substrate may remain unidentified.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q86SF2|GALT7_HUMAN N-acetylgalactosaminyltransferase 7 OS=Homo sapiens GN=GALNT7 PE=1 SV=1

 Score =  238 bits (608), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 127/253 (50%), Positives = 175/253 (69%), Gaps = 7/253 (2%)

Query: 189 PVFKADGKLGNLEP--PLEP-YKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHI 245
           PV +  G LGN EP  P  P    GPGE  K   L   ++ A  AS+ E+G NM  S+ I
Sbjct: 125 PVLRP-GILGNFEPKEPEPPGVVGGPGEKAKPLVLGPEFKQAIQASIKEFGFNMVASDMI 183

Query: 246 SFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEII 305
           S DR++ DLR EECKYW Y  +L  +SV++VFHNEG+S+LMRTVHS+IKRTP +YL EI+
Sbjct: 184 SLDRSVNDLRQEECKYWHYDENLLTSSVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIV 243

Query: 306 LVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR-GEVIVFLDAH 364
           L+DDFS+K  L +KL++YI+ +NG V++ RN  REGLI+ RS GA++++ G+V+++LDAH
Sbjct: 244 LIDDFSNKEHLKEKLDEYIKLWNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAH 303

Query: 365 CEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEF--RSVYEPDHHYRGIFEWGMLYK 422
           CEV +NW  PL+API  DR I TVP+ID I+  T+E   +   + D + RG ++W ML+K
Sbjct: 304 CEVAVNWYAPLVAPISKDRTICTVPLIDVINGNTYEIIPQGGGDEDGYARGAWDWSMLWK 363

Query: 423 ENELPEREAKKRK 435
              L  +E + RK
Sbjct: 364 RVPLTPQEKRLRK 376

Glycopeptide transferase involved in O-linked oligosaccharide biosynthesis, which catalyzes the transfer of an N-acetyl-D-galactosamine residue to an already glycosylated peptide. In contrast to other proteins of the family, it does not act as a peptide transferase that transfers GalNAc onto serine or threonine residue on the protein receptor, but instead requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. Some peptide transferase activity is however not excluded, considering that its appropriate peptide substrate may remain unidentified.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RFJ6|GALT7_PONAB N-acetylgalactosaminyltransferase 7 OS=Pongo abelii GN=GALNT7 PE=2 SV=1

 Score =  238 bits (608), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 127/253 (50%), Positives = 175/253 (69%), Gaps = 7/253 (2%)

Query: 189 PVFKADGKLGNLEP--PLEP-YKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHI 245
           PV +  G LGN EP  P  P    GPGE  K   L   ++ A  AS+ E+G NM  S+ I
Sbjct: 125 PVLRP-GILGNFEPKEPEPPGVVGGPGEKAKPLVLGPEFKQAIQASIKEFGFNMVASDMI 183

Query: 246 SFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEII 305
           S DR++ DLR EECKYW Y  +L  +SV++VFHNEG+S+LMRTVHS+IKRTP +YL EI+
Sbjct: 184 SLDRSVNDLRQEECKYWHYDENLLTSSVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIV 243

Query: 306 LVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR-GEVIVFLDAH 364
           L+DDFS+K  L +KL++YI+ +NG V++ RN  REGLI+ RS GA++++ G+V+++LDAH
Sbjct: 244 LIDDFSNKEHLKEKLDEYIKLWNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAH 303

Query: 365 CEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEF--RSVYEPDHHYRGIFEWGMLYK 422
           CEV +NW  PL+API  DR I TVP+ID I+  T+E   +   + D + RG ++W ML+K
Sbjct: 304 CEVAVNWYAPLVAPISKDRTICTVPLIDVINGNTYEIIPQGGGDEDGYARGAWDWSMLWK 363

Query: 423 ENELPEREAKKRK 435
              L  +E + RK
Sbjct: 364 RVPLTPQEKRLRK 376

Glycopeptide transferase involved in O-linked oligosaccharide biosynthesis, which catalyzes the transfer of an N-acetyl-D-galactosamine residue to an already glycosylated peptide. In contrast to other proteins of the family, it does not act as a peptide transferase that transfers GalNAc onto serine or threonine residue on the protein receptor, but instead requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. Some peptide transferase activity is however not excluded, considering that its appropriate peptide substrate may remain unidentified.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q49A17|GLTL6_HUMAN Polypeptide N-acetylgalactosaminyltransferase-like 6 OS=Homo sapiens GN=GALNTL6 PE=2 SV=2

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/223 (47%), Positives = 145/223 (65%), Gaps = 5/223 (2%)

Query: 205 EPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDY 264
           E  + G GE GK Y L E      D++  E G N+  SN+I+ +R++PD+R   CK+  Y
Sbjct: 78  EAMRSGKGEHGKPYPLTE--EDHDDSAYRENGFNIFVSNNIALERSLPDIRHANCKHKMY 135

Query: 265 PLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYI 324
              LP  S+I+ FHNEG++SL+RT+HSII RTP   + EIILVDDFS +  L  KLE+Y+
Sbjct: 136 LERLPNTSIIIPFHNEGWTSLLRTIHSIINRTPGSLIAEIILVDDFSEREHLKDKLEEYM 195

Query: 325 QRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384
            RF+ KVR++R  +REGLIRTR  GA  +RGEV+ FLD+HCEV +NWLPPLL  I  + K
Sbjct: 196 ARFS-KVRIVRTKKREGLIRTRLLGASMARGEVLTFLDSHCEVNVNWLPPLLNQIALNHK 254

Query: 385 IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP 427
            +  P+ID ID+  + + +  +     RG F+W M YK   +P
Sbjct: 255 TIVCPMIDVIDHNHFGYEA--QAGDAMRGAFDWEMYYKRIPIP 295

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q07537|GALT1_BOVIN Polypeptide N-acetylgalactosaminyltransferase 1 OS=Bos taurus GN=GALNT1 PE=1 SV=1

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 149/239 (62%), Gaps = 4/239 (1%)

Query: 200 LEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEEC 259
           LEP  +P+ EGPGE GK   +P+  +            N+  S  I+ +R++PD+R+E C
Sbjct: 48  LEPVQKPH-EGPGEMGKPVVIPKEDQEKMKEMFKINQFNLMASEMIALNRSLPDVRLEGC 106

Query: 260 KYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQK 319
           K   YP +LP  SV++VFHNE +S+L+RTVHS+I R+P   LEEI+LVDD S +  L + 
Sbjct: 107 KTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMLEEIVLVDDASERDFLKRP 166

Query: 320 LEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 379
           LE Y+++    V +IR  +R GLIR R +GA  S+G+VI FLDAHCE  + WL PLLA I
Sbjct: 167 LESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLDAHCECTVGWLEPLLARI 226

Query: 380 YSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNR 438
             DRK +  P+ID I   T+E+ +    D  Y G F W + ++   +P+RE  +RK +R
Sbjct: 227 KHDRKTVVCPIIDVISDDTFEYMA--GSDMTYGG-FNWKLNFRWYPVPQREMDRRKGDR 282

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q29121|GALT1_PIG Polypeptide N-acetylgalactosaminyltransferase 1 OS=Sus scrofa GN=GALNT1 PE=2 SV=1

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 149/239 (62%), Gaps = 4/239 (1%)

Query: 200 LEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEEC 259
           LEP  +P+ EGPGE GK   +P+  +            N+  S  I+ +R++PD+R+E C
Sbjct: 48  LEPVQKPH-EGPGEMGKPVVIPKEDQDKMKEMFKINQFNLMASEMIALNRSLPDVRLEGC 106

Query: 260 KYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQK 319
           K   YP +LP  SV++VFHNE +S+L+RTVHS+I R+P   LEEI+LVDD S +  L + 
Sbjct: 107 KTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMLEEIVLVDDASERDFLKRP 166

Query: 320 LEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 379
           LE Y+++    V +IR  +R GLIR R +GA  S+G+VI FLDAHCE  + WL PLLA I
Sbjct: 167 LESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLDAHCECTVGWLEPLLARI 226

Query: 380 YSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNR 438
             DRK +  P+ID I   T+E+ +    D  Y G F W + ++   +P+RE  +RK +R
Sbjct: 227 KHDRKTVVCPIIDVISDDTFEYMA--GSDMTYGG-FNWKLNFRWYPVPQREMDRRKGDR 282

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q10472|GALT1_HUMAN Polypeptide N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=GALNT1 PE=1 SV=1

 Score =  195 bits (496), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 103/239 (43%), Positives = 149/239 (62%), Gaps = 4/239 (1%)

Query: 200 LEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEEC 259
           LEP  +P+ EGPGE GK   +P+  +            N+  S  I+ +R++PD+R+E C
Sbjct: 48  LEPVQKPH-EGPGEMGKPVVIPKEDQEKMKEMFKINQFNLMASEMIALNRSLPDVRLEGC 106

Query: 260 KYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQK 319
           K   YP +LP  SV++VFHNE +S+L+RTVHS+I R+P   +EEI+LVDD S +  L + 
Sbjct: 107 KTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRP 166

Query: 320 LEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 379
           LE Y+++    V +IR  +R GLIR R +GA  S+G+VI FLDAHCE  + WL PLLA I
Sbjct: 167 LESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLDAHCECTVGWLEPLLARI 226

Query: 380 YSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNR 438
             DR+ +  P+ID I   T+E+ +    D  Y G F W + ++   +P+RE  +RK +R
Sbjct: 227 KHDRRTVVCPIIDVISDDTFEYMA--GSDMTYGG-FNWKLNFRWYPVPQREMDRRKGDR 282

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b and Muc7.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
157106440	596	n-acetylgalactosaminyltransferase [Aedes	0.546	0.402	0.688	6e-93
193683588	588	PREDICTED: n-acetylgalactosaminyltransfe	0.562	0.420	0.673	3e-92
158289457	598	AGAP000656-PA [Anopheles gambiae str. PE	0.546	0.401	0.676	8e-92
321473823	521	hypothetical protein DAPPUDRAFT_209135 [	0.548	0.462	0.647	2e-90
91081797	583	PREDICTED: similar to n-acetylgalactosam	0.601	0.452	0.620	3e-90
312383497	874	hypothetical protein AND_03374 [Anophele	0.548	0.275	0.668	5e-90
195039904	591	GH12336 [Drosophila grimshawi] gi|193900	0.585	0.434	0.634	3e-89
383860243	581	PREDICTED: N-acetylgalactosaminyltransfe	0.562	0.425	0.646	1e-87
195400935	591	GJ15190 [Drosophila virilis] gi|19414172	0.585	0.434	0.626	2e-87
195447414	587	GK25256 [Drosophila willistoni] gi|19416	0.583	0.436	0.626	2e-87

>gi|157106440|ref|XP_001649323.1| n-acetylgalactosaminyltransferase [Aedes aegypti] gi|108879843|gb|EAT44068.1| AAEL004538-PA [Aedes aegypti]

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 166/241 (68%), Positives = 195/241 (80%)

Query: 197 LGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRM 256
           LGN EP     ++GPGEGGKAY LPE  +     +  EYGMN+  S+ IS DRTI D R+
Sbjct: 75  LGNFEPKEVDRRDGPGEGGKAYILPEDQQNRASDAEMEYGMNIVVSDTISLDRTIRDTRL 134

Query: 257 EECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADL 316
           EECK+WDYP +LP  SVI+VFHNEGFS LMRTVHS++ R+P   L EIILVDDFS K DL
Sbjct: 135 EECKHWDYPHNLPTTSVIIVFHNEGFSVLMRTVHSVLNRSPKHVLHEIILVDDFSDKEDL 194

Query: 317 DQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLL 376
            +KLE+YI+RF+GKV+LIRN EREGLIRTRSRGAKE+ GEVIV+LDAHCEV  NWLPPLL
Sbjct: 195 KEKLENYIERFDGKVKLIRNVEREGLIRTRSRGAKEATGEVIVYLDAHCEVNTNWLPPLL 254

Query: 377 APIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKY 436
           APIY DR +MTVPVIDGID++T+E+R VY   HHYRGIFEWGMLYKENE+P RE K+RK+
Sbjct: 255 APIYRDRTVMTVPVIDGIDHKTFEYRPVYADGHHYRGIFEWGMLYKENEVPRREQKRRKH 314

Query: 437 N 437
           +
Sbjct: 315 D 315

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193683588|ref|XP_001951150.1| PREDICTED: n-acetylgalactosaminyltransferase 7-like [Acyrthosiphon pisum]

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 167/248 (67%), Positives = 197/248 (79%), Gaps = 1/248 (0%)

Query: 189 PVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFD 248
           P+++ D   GN E      K GPGE GKA+H+P         SL EYGMNM  S+ IS +
Sbjct: 58  PIYR-DQIFGNFEYSTSTNKPGPGEKGKAHHVPSDRENEALQSLSEYGMNMACSDDISLN 116

Query: 249 RTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVD 308
           R+IPD R EECKYW YP  LP+ SVI+VFHNEG+SSL+RTVHSI+ RTP Q+LEEI+LVD
Sbjct: 117 RSIPDHREEECKYWTYPEQLPRTSVIIVFHNEGWSSLLRTVHSILNRTPPQFLEEILLVD 176

Query: 309 DFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVG 368
           DFSSK +L +KLE YI++FNGKVRLIRN+EREGLIRTRS+GA  +RGEVI+FLDAHCEVG
Sbjct: 177 DFSSKENLKKKLEYYIEKFNGKVRLIRNSEREGLIRTRSKGASNARGEVILFLDAHCEVG 236

Query: 369 LNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPE 428
            NWLPPL+API  DRKIMTVPVIDGID+ TWE+R VYE DH +RGIFEWGMLYKE E+P 
Sbjct: 237 YNWLPPLIAPIARDRKIMTVPVIDGIDHNTWEYRPVYEKDHLFRGIFEWGMLYKEIEIPA 296

Query: 429 REAKKRKY 436
           +E +KR Y
Sbjct: 297 QEERKRIY 304

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158289457|ref|XP_311182.4| AGAP000656-PA [Anopheles gambiae str. PEST] gi|157018524|gb|EAA06901.4| AGAP000656-PA [Anopheles gambiae str. PEST]

 Score =  343 bits (881), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 163/241 (67%), Positives = 194/241 (80%)

Query: 197 LGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRM 256
           LGN EP  +P  +GPGEGGKAY LPE  +     +  EYGMN+  S+ IS DRTI D R+
Sbjct: 77  LGNFEPADKPMVDGPGEGGKAYVLPEDQQNRATDAEMEYGMNIVVSDAISLDRTIKDTRL 136

Query: 257 EECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADL 316
           EECK+WDYP  LP+ SV++VFHNEGFS LMRTVHS++ R+P   L EIILVDD+S K DL
Sbjct: 137 EECKHWDYPYHLPRTSVVIVFHNEGFSVLMRTVHSVLNRSPKHLLHEIILVDDYSDKEDL 196

Query: 317 DQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLL 376
             KLE YI+RF+G VRLIRN+EREGLIRTRSRGAKE+ GEVIV+LDAHCEV  NWLPPLL
Sbjct: 197 KGKLERYIERFDGMVRLIRNSEREGLIRTRSRGAKEATGEVIVYLDAHCEVNTNWLPPLL 256

Query: 377 APIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKY 436
           API+ DR +MTVP+IDGID++T+E+R VY   HHYRGIFEWGMLYKENE+P RE K+RK+
Sbjct: 257 APIHRDRTVMTVPIIDGIDHKTFEYRPVYADGHHYRGIFEWGMLYKENEVPRREQKRRKH 316

Query: 437 N 437
           +
Sbjct: 317 D 317

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321473823|gb|EFX84789.1| hypothetical protein DAPPUDRAFT_209135 [Daphnia pulex]

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 156/241 (64%), Positives = 197/241 (81%)

Query: 197 LGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRM 256
           +GN EPP+E  + GPGEGGK + L    R     S+ E+GMNM  S+ IS  RTI D R 
Sbjct: 1   MGNFEPPIEAPRSGPGEGGKPHTLLPDQRNEASQSISEFGMNMVVSDEISLSRTISDTRT 60

Query: 257 EECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADL 316
            EC++W YP DLPKASV++VFHNEG+S+L+RTV S+I R+P Q+LEE++LVDDFS KA L
Sbjct: 61  PECQHWSYPEDLPKASVVIVFHNEGWSTLLRTVQSVIDRSPPQFLEEVLLVDDFSEKAHL 120

Query: 317 DQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLL 376
            +KLED+I+R++GKVRLIRN EREGLIRTR+RGA+E+RGEV++FLDAHCEVGLNWLPPLL
Sbjct: 121 KRKLEDFIERYDGKVRLIRNKEREGLIRTRTRGAEEARGEVVLFLDAHCEVGLNWLPPLL 180

Query: 377 APIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKY 436
            PIY DR  MTVP+IDGID++ +E+R VY+ + ++RG+FEWGMLYKENE+PEREA+ R Y
Sbjct: 181 YPIYLDRTTMTVPLIDGIDHENFEYRPVYQGETNFRGVFEWGMLYKENEVPEREAQSRTY 240

Query: 437 N 437
           N
Sbjct: 241 N 241

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081797|ref|XP_973938.1| PREDICTED: similar to n-acetylgalactosaminyltransferase [Tribolium castaneum] gi|270006291|gb|EFA02739.1| hypothetical protein TcasGA2_TC008465 [Tribolium castaneum]

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 165/266 (62%), Positives = 202/266 (75%), Gaps = 2/266 (0%)

Query: 172 GGSIEWVPCSRIVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDAS 231
           G  +E    +R+    RP   +D  LGN EP      EGPGEGGK +HL +  +   D S
Sbjct: 39  GFDLESPIAARLSHKERPKLVSD--LGNFEPRDSQEHEGPGEGGKPHHLRQDQQNDADQS 96

Query: 232 LGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHS 291
             EYGMN+  S+ IS DRTI D R+ ECK+W+YP +LP  SVI+VFHNEG+S L+RTVHS
Sbjct: 97  ESEYGMNVACSDEISLDRTILDTRLSECKHWNYPENLPSTSVIIVFHNEGWSVLLRTVHS 156

Query: 292 IIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 351
           +I R+P + L+E++LVDDFS K +L  +LE YI+RFNGKVRLIRN +REGLIRTRSRGAK
Sbjct: 157 VINRSPPKILKEVLLVDDFSDKENLKTRLETYIERFNGKVRLIRNAQREGLIRTRSRGAK 216

Query: 352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHY 411
           E+ GEVIVFLDAHCEV  NWLPPLLAPIY DR +MTVPVIDGID++T+E+R VY  D H+
Sbjct: 217 EATGEVIVFLDAHCEVNTNWLPPLLAPIYRDRSVMTVPVIDGIDHKTFEYRPVYGEDRHF 276

Query: 412 RGIFEWGMLYKENELPEREAKKRKYN 437
           RGIFEWGMLYKENE+P++E   RK+N
Sbjct: 277 RGIFEWGMLYKENEVPQKELNTRKHN 302

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383497|gb|EFR28562.1| hypothetical protein AND_03374 [Anopheles darlingi]

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 161/241 (66%), Positives = 190/241 (78%)

Query: 197 LGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRM 256
           LGN EP     +EGPGEGG+AY LPE  +     +  EYGMN+  S+ IS DRTI D R+
Sbjct: 75  LGNFEPHEPTVREGPGEGGRAYVLPEDQQNQATDAEMEYGMNIVVSDAISLDRTIRDTRL 134

Query: 257 EECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADL 316
           EECK+WDYP  LPK SVI+VFHNEGFS LMRTVHS++ R+P   L EIILVDD+S K DL
Sbjct: 135 EECKHWDYPYHLPKTSVIIVFHNEGFSVLMRTVHSVLNRSPKHLLHEIILVDDYSDKEDL 194

Query: 317 DQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLL 376
             KLE YI+RF   V+LIRN+EREGLIRTRSRGA E+ GEVIV+LDAHCEV  NWLPPLL
Sbjct: 195 RGKLERYIERFGSLVKLIRNSEREGLIRTRSRGAHEATGEVIVYLDAHCEVNTNWLPPLL 254

Query: 377 APIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKY 436
           API+ DR +MTVP+IDGID++T+E+R VY   HHYRGIFEWGMLYKENE+P RE K+RK+
Sbjct: 255 APIHRDRTVMTVPIIDGIDHKTFEYRPVYADGHHYRGIFEWGMLYKENEVPRREQKRRKH 314

Query: 437 N 437
           +
Sbjct: 315 D 315

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195039904|ref|XP_001990971.1| GH12336 [Drosophila grimshawi] gi|193900729|gb|EDV99595.1| GH12336 [Drosophila grimshawi]

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 163/257 (63%), Positives = 196/257 (76%)

Query: 181 SRIVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNME 240
            R+ +  R V K    LGN EP     + GPGE G AY LP   +   DAS  EYGMN+ 
Sbjct: 54  QRLENRPREVPKLVEGLGNFEPKDLKPRTGPGENGDAYTLPPEKKNVADASEMEYGMNIA 113

Query: 241 TSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQY 300
            S+ IS  R++ + R+EECK+WDYP DLP  SVI+VFHNEGFS LMRTVHS+I R+P   
Sbjct: 114 CSDDISMHRSVRETRLEECKHWDYPYDLPPTSVIIVFHNEGFSVLMRTVHSVIDRSPKHM 173

Query: 301 LEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVF 360
           L EIILVDDFS K +L  KL+DY+Q+FNG V++IRN EREGLIRTRSRGA E+ GEVIVF
Sbjct: 174 LHEIILVDDFSDKENLRSKLDDYVQQFNGLVKIIRNKEREGLIRTRSRGAMEATGEVIVF 233

Query: 361 LDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGML 420
           LDAHCEV LNWLPPLLAPIY DR +MTVP+IDGID++T+E+R VY  D+H+RGIFEWGML
Sbjct: 234 LDAHCEVNLNWLPPLLAPIYRDRTVMTVPIIDGIDHKTFEYRPVYGSDNHFRGIFEWGML 293

Query: 421 YKENELPEREAKKRKYN 437
           YKENE+P RE ++R +N
Sbjct: 294 YKENEVPRREQRRRAHN 310

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860243|ref|XP_003705600.1| PREDICTED: N-acetylgalactosaminyltransferase 7-like [Megachile rotundata]

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 161/249 (64%), Positives = 194/249 (77%), Gaps = 2/249 (0%)

Query: 189 PVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFD 248
           PV   D  LGN E    P + GPGEGGK + L +  +     S  EYGMNM  S+ IS D
Sbjct: 54  PVLVKD--LGNFELQHVPIRTGPGEGGKPHILRDDQQNDVQQSESEYGMNMVCSDEISLD 111

Query: 249 RTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVD 308
           R++PD RM ECK+W+YP  LP+ SVI+VFHNEG+S LMRTVHS+I RTP Q+LEEI+LVD
Sbjct: 112 RSVPDTRMTECKHWNYPEVLPRTSVIIVFHNEGWSVLMRTVHSVINRTPPQFLEEILLVD 171

Query: 309 DFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVG 368
           D+S K +L  +LE YI+++ GKV+LIRN EREGLIRTRSRGA+E++GEVIVFLDAHCEV 
Sbjct: 172 DYSDKDNLKGELESYIEQWEGKVKLIRNYEREGLIRTRSRGAREAKGEVIVFLDAHCEVN 231

Query: 369 LNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPE 428
           +NWLPPLLAPI  DR +MTVP+IDGID++T+E+R VY+  H YRGIFEWGMLYKENELP 
Sbjct: 232 VNWLPPLLAPIAVDRTVMTVPIIDGIDHKTFEYRPVYQEGHLYRGIFEWGMLYKENELPA 291

Query: 429 REAKKRKYN 437
           RE K R YN
Sbjct: 292 REQKTRPYN 300

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195400935|ref|XP_002059071.1| GJ15190 [Drosophila virilis] gi|194141723|gb|EDW58140.1| GJ15190 [Drosophila virilis]

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 161/257 (62%), Positives = 193/257 (75%)

Query: 181 SRIVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNME 240
            R+ +  R V K    LGN EP     + GPGE G A+ L    +   DAS  EYGMN+ 
Sbjct: 54  QRLENRPREVPKLVEGLGNFEPKDLKPRNGPGENGDAHTLSPDKKNVADASEMEYGMNIA 113

Query: 241 TSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQY 300
            S+ IS  R++ D R+EECK+WDYP DLP  SVI+VFHNEGFS LMRTVHS+I R+P   
Sbjct: 114 CSDEISMHRSVRDTRLEECKHWDYPYDLPPTSVIIVFHNEGFSVLMRTVHSVIDRSPKHM 173

Query: 301 LEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVF 360
           L EIILVDDFS K +L  KL+DY+ +F G VR+IRNTEREGLIRTRSRGA E+ GEVIVF
Sbjct: 174 LHEIILVDDFSDKENLRTKLDDYVLQFKGLVRIIRNTEREGLIRTRSRGAMEATGEVIVF 233

Query: 361 LDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGML 420
           LDAHCEV LNWLPPLLAPIY DR +MTVP+IDGID++++E+R VY  D H+RGIFEWGML
Sbjct: 234 LDAHCEVNLNWLPPLLAPIYRDRTVMTVPIIDGIDHKSFEYRPVYGSDTHFRGIFEWGML 293

Query: 421 YKENELPEREAKKRKYN 437
           YKENE+P RE ++R +N
Sbjct: 294 YKENEVPRREQRRRAHN 310

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447414|ref|XP_002071203.1| GK25256 [Drosophila willistoni] gi|194167288|gb|EDW82189.1| GK25256 [Drosophila willistoni]

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 161/257 (62%), Positives = 195/257 (75%)

Query: 181 SRIVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNME 240
            R+ +  R V K    LGN EP     + GPGE G A+ L    + A DAS  EYGMN+ 
Sbjct: 50  QRLENRPREVPKLIEGLGNFEPKDLKPRSGPGENGDAHVLNANKKNAADASEMEYGMNIA 109

Query: 241 TSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQY 300
            S+ IS  R++ D R+EECK+WDYP DLP  SVI+VFHNEGFS LMRTVHS+I R+P   
Sbjct: 110 CSDDISMHRSVRDTRLEECKHWDYPYDLPPTSVIIVFHNEGFSVLMRTVHSVIDRSPKHM 169

Query: 301 LEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVF 360
           L EIILVDDFS K +L  KL++YI +F+G V++IRN EREGLIRTRSRGAKE+ GEVIVF
Sbjct: 170 LHEIILVDDFSDKENLKAKLDEYILQFDGLVKIIRNKEREGLIRTRSRGAKEATGEVIVF 229

Query: 361 LDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGML 420
           LDAHCEV LNWLPPLLAPIY DR +MTVP+IDGID++ +E+R VY  D+H+RGIFEWGML
Sbjct: 230 LDAHCEVNLNWLPPLLAPIYRDRTVMTVPIIDGIDHKNFEYRPVYGTDNHFRGIFEWGML 289

Query: 421 YKENELPEREAKKRKYN 437
           YKENE+P RE ++R +N
Sbjct: 290 YKENEVPRREQRRRAHN 306

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
FB|FBgn0030930	591	GalNAc-T2 "UDP-N-acetyl-alpha-	0.453	0.336	0.695	2.7e-77
WB|WBGene00001632	601	gly-7 [Caenorhabditis elegans	0.482	0.352	0.596	2.4e-69
ZFIN|ZDB-GENE-050522-284	652	galnt7 "UDP-N-acetyl-alpha-D-g	0.487	0.328	0.540	1.5e-58
RGD|620362	657	Galnt7 "UDP-N-acetyl-alpha-D-g	0.487	0.325	0.527	6.6e-58
UNIPROTKB|Q9R0C5	657	Galnt7 "N-acetylgalactosaminyl	0.487	0.325	0.527	6.6e-58
MGI|MGI:1349449	657	Galnt7 "UDP-N-acetyl-alpha-D-g	0.487	0.325	0.527	8.4e-58
UNIPROTKB|F1Q3F3	657	GALNT7 "Uncharacterized protei	0.487	0.325	0.527	1.1e-57
UNIPROTKB|F1N4Q3	652	GALNT7 "Uncharacterized protei	0.487	0.328	0.532	1.4e-57
UNIPROTKB|F1RIZ9	615	GALNT7 "Uncharacterized protei	0.487	0.347	0.522	2.8e-57
UNIPROTKB|F1NPU9	613	GALNT7 "Uncharacterized protei	0.498	0.357	0.504	4.6e-57

FB|FBgn0030930 GalNAc-T2 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 139/200 (69%), Positives = 168/200 (84%)

Query:     1 DLDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPP 60
             +L  +L++Y+ +F G V++IRN EREGLIRTRSRGA E+ GEVIVFLDAHCEV  NWLPP
Sbjct:   188 NLRSQLDEYVLQFKGLVKVIRNKEREGLIRTRSRGAMEATGEVIVFLDAHCEVNTNWLPP 247

Query:    61 LLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKR 120
             LLAPIY DR +MTVP+IDGID++ +E+R VY  D+H+RGIFEWGMLYKENE+P RE ++R
Sbjct:   248 LLAPIYRDRTVMTVPIIDGIDHKNFEYRPVYGTDNHFRGIFEWGMLYKENEVPRREQRRR 307

Query:   121 KYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPC 180
              +NSEPY+SPTHAGGLFA++R +FLELG YDPGLLVWGGENFELSFKIW CGGSIEWVPC
Sbjct:   308 AHNSEPYRSPTHAGGLFAINREYFLELGAYDPGLLVWGGENFELSFKIWQCGGSIEWVPC 367

Query:   181 SRIVSLIRPVFKAD-GKLGN 199
             SR+  + R     + GKL +
Sbjct:   368 SRVGHVYRGFMPYNFGKLAS 387

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=ISS;IDA;NAS

GO:0009312 "oligosaccharide biosynthetic process" evidence=IDA

GO:0005795 "Golgi stack" evidence=NAS

WB|WBGene00001632 gly-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 127/213 (59%), Positives = 165/213 (77%)

Query:   226 AAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSL 285
             AAG A+  E+G N   S+ IS +RTIPD+R EECK+WDYP  LP  SV++VFHNEG++ L
Sbjct:   113 AAGRAAEKEFGFNTYVSDMISMNRTIPDIRPEECKHWDYPEKLPTVSVVVVFHNEGWTPL 172

Query:   286 MRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT 345
             +RTVHS++ R+P + +E++++VDD S K  L +KL+ Y+ RFNGKV ++R  +REGLI  
Sbjct:   173 LRTVHSVLLRSPPELIEQVVMVDDDSDKPHLKEKLDKYVTRFNGKVIVVRTEQREGLINA 232

Query:   346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVY 405
             RS GAK S GEV++FLDAHCEV  NWLPPLLAPI  +RK+MTVPVIDGID  +WE+RSVY
Sbjct:   233 RSIGAKHSTGEVVLFLDAHCEVNTNWLPPLLAPIKRNRKVMTVPVIDGIDSNSWEYRSVY 292

Query:   406 -EPDHHYRGIFEWGMLYKENELPEREAKKRKYN 437
               P+ H+ GIFEWG+LYKE ++ ERE   RK+N
Sbjct:   293 GSPNAHHSGIFEWGLLYKETQITERETAHRKHN 325

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050522-284 galnt7 "UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7" [Danio rerio (taxid:7955)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 119/220 (54%), Positives = 164/220 (74%)

Query:   221 PEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNE 280
             PE Y+ A  AS+ E+G NM  S+ IS DRT+ DLR EECKYW+Y  +L  +SVI+VFHNE
Sbjct:   155 PE-YKDAVQASIKEFGFNMVASDMISLDRTVGDLRHEECKYWNYDENLLTSSVIIVFHNE 213

Query:   281 GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE 340
             G+S+LMRTVHS+IKRTP +YL EI+++DDFS+KA L ++LE+YI+++NG V++ RN +RE
Sbjct:   214 GWSTLMRTVHSVIKRTPRKYLAEIVMIDDFSNKAHLKERLEEYIKQWNGLVKVFRNEKRE 273

Query:   341 GLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID---GIDY 396
             GLI+ RS GA+++  G+V+++LDAHCEVG+NW  PL+API  DR + TVP+ID   G DY
Sbjct:   274 GLIQARSIGARKATLGKVLIYLDAHCEVGVNWYAPLVAPISKDRTVCTVPLIDYIDGNDY 333

Query:   397 QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKY 436
              T E +   + D   RG ++W +L+K   L  RE  KRK+
Sbjct:   334 -TIEPQQGGDEDGLARGAWDWSLLWKRVPLSSREKAKRKH 372

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|620362 Galnt7 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)" [Rattus norvegicus (taxid:10116)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 115/218 (52%), Positives = 159/218 (72%)

Query:   221 PEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNE 280
             PE Y+ A  AS+ E+G NM  S+ IS DR++ DLR EECKYW Y  +L  +SV++VFHNE
Sbjct:   160 PE-YKQAAQASIKEFGFNMAASDMISLDRSVNDLRQEECKYWHYDENLLTSSVVIVFHNE 218

Query:   281 GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE 340
             G+S+LMRTVHS+IKRTP +YL EI+L+DDFS+K  L +KL +YI+ +NG V++ RN  RE
Sbjct:   219 GWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLTEYIKLWNGLVKVFRNERRE 278

Query:   341 GLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTW 399
             GLI+ RS GA++++ G+V+++LDAHCEV +NW  PL+API  DR I TVP+ID I+  T+
Sbjct:   279 GLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDRTICTVPIIDVINGNTY 338

Query:   400 EF--RSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK 435
             E   +   + D + RG ++W ML+K   L  RE + RK
Sbjct:   339 EIIPQGGGDEDGYARGAWDWSMLWKRVPLTPREKRLRK 376

GO:0000139 "Golgi membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0006493 "protein O-linked glycosylation" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|Q9R0C5 Galnt7 "N-acetylgalactosaminyltransferase 7" [Rattus norvegicus (taxid:10116)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 115/218 (52%), Positives = 159/218 (72%)

Query:   221 PEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNE 280
             PE Y+ A  AS+ E+G NM  S+ IS DR++ DLR EECKYW Y  +L  +SV++VFHNE
Sbjct:   160 PE-YKQAAQASIKEFGFNMAASDMISLDRSVNDLRQEECKYWHYDENLLTSSVVIVFHNE 218

Query:   281 GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE 340
             G+S+LMRTVHS+IKRTP +YL EI+L+DDFS+K  L +KL +YI+ +NG V++ RN  RE
Sbjct:   219 GWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLTEYIKLWNGLVKVFRNERRE 278

Query:   341 GLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTW 399
             GLI+ RS GA++++ G+V+++LDAHCEV +NW  PL+API  DR I TVP+ID I+  T+
Sbjct:   279 GLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDRTICTVPIIDVINGNTY 338

Query:   400 EF--RSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK 435
             E   +   + D + RG ++W ML+K   L  RE + RK
Sbjct:   339 EIIPQGGGDEDGYARGAWDWSMLWKRVPLTPREKRLRK 376

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1349449 Galnt7 "UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7" [Mus musculus (taxid:10090)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 115/218 (52%), Positives = 159/218 (72%)

Query:   221 PEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNE 280
             PE Y+ A  AS+ E+G NM  S+ IS DR++ DLR EECKYW Y  +L  +SV++VFHNE
Sbjct:   160 PE-YKQAVQASIKEFGFNMVASDMISLDRSVNDLRQEECKYWHYDENLLTSSVVIVFHNE 218

Query:   281 GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE 340
             G+S+LMRTVHS+IKRTP +YL EI+L+DDFS+K  L +KL++YI+ +NG V++ RN  RE
Sbjct:   219 GWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLDEYIKLWNGLVKVFRNERRE 278

Query:   341 GLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTW 399
             GLI+ RS GA++++ G+V+++LDAHCEV +NW  PL+API  DR I TVP+ID I   T+
Sbjct:   279 GLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDRTICTVPIIDVISGNTY 338

Query:   400 EF--RSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK 435
             E   +   + D + RG ++W ML+K   L  RE + RK
Sbjct:   339 EIIPQGGGDEDGYARGAWDWSMLWKRVPLTSREKRLRK 376

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006493 "protein O-linked glycosylation" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|F1Q3F3 GALNT7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 115/218 (52%), Positives = 160/218 (73%)

Query:   221 PEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNE 280
             PE ++ A  AS+ E+G NM  S+ IS DR++ DLR EECKYW Y  +L  +SV++VFHNE
Sbjct:   160 PE-FKHAIQASIKEFGFNMVASDMISLDRSVNDLRQEECKYWHYDENLLTSSVVIVFHNE 218

Query:   281 GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE 340
             G+S+LMRTVHS+IKRTP +YL EI+L+DDFS+K  L +KL+DYI+ +NG V++ RN  RE
Sbjct:   219 GWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLDDYIKLWNGLVKVFRNERRE 278

Query:   341 GLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTW 399
             GLI+ RS GA++++ G+V+++LDAHCEV +NW  PL+API  DR I TVP+ID I+  T+
Sbjct:   279 GLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDRTICTVPIIDVINGNTY 338

Query:   400 EF--RSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK 435
             E   +   + D + RG ++W ML+K   L  RE + RK
Sbjct:   339 EIIPQGGGDEDGYARGAWDWSMLWKRVPLTPREKRMRK 376

GO:0006486 "protein glycosylation" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1N4Q3 GALNT7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 116/218 (53%), Positives = 160/218 (73%)

Query:   221 PEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNE 280
             PE ++ A  AS+ E+G NM  S+ IS DR++ DLR EECKYW Y  +L  AS+I+VFHNE
Sbjct:   155 PE-FKHAVQASIKEFGFNMVASDMISLDRSVNDLRQEECKYWHYDENLLTASIIIVFHNE 213

Query:   281 GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE 340
             G+S+LMRTVHS+IKRTP +YL EI+L+DDFS+K  L +KL+DYI+ +NG V++ RN  RE
Sbjct:   214 GWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLDDYIKLWNGLVKVFRNERRE 273

Query:   341 GLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTW 399
             GLI+ RS GA++++ G+V+++LDAHCEV +NW  PL+API  DR I TVP+ID I+  T+
Sbjct:   274 GLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDRTICTVPLIDVINGNTY 333

Query:   400 EF--RSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK 435
             E   +   + D + RG ++W ML+K   L  RE + RK
Sbjct:   334 EIVPQGGGDEDGYARGAWDWSMLWKRVPLTLREKRLRK 371

GO:0006493 "protein O-linked glycosylation" evidence=IEA

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1RIZ9 GALNT7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 114/218 (52%), Positives = 158/218 (72%)

Query:   221 PEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNE 280
             PE   A   AS+ E+G NM  S+ IS DR++ DLR EECKYW Y  +L  AS+++VFHNE
Sbjct:   118 PELKHAV-QASIKEFGFNMVASDMISLDRSVNDLRQEECKYWHYDENLLTASIVIVFHNE 176

Query:   281 GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE 340
             G+S+LMRTVHS+IKRTP +YL EI+L+DDFS+K  L +KL++YI+ +NG V++ RN  RE
Sbjct:   177 GWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLDEYIKLWNGLVKVFRNERRE 236

Query:   341 GLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTW 399
             GLI+ RS GA++++ G+V+++LDAHCEV +NW  PL+API  DR I TVP+ID I+  T+
Sbjct:   237 GLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDRTICTVPIIDVINGNTY 296

Query:   400 EF--RSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK 435
             E   +   + D + RG ++W ML+K   L  RE + RK
Sbjct:   297 EIVPQGGGDEDGYARGAWDWSMLWKRVPLTPREKRMRK 334

GO:0006486 "protein glycosylation" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1NPU9 GALNT7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 112/222 (50%), Positives = 158/222 (71%)

Query:   218 YHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVF 277
             Y L   Y+ +  AS+ E+G NM  S+ IS DR++ DLR EECK+W Y  +L  +SV++VF
Sbjct:   112 YVLGPDYKESVQASIKEFGFNMVASDMISLDRSVNDLRQEECKHWHYDENLLTSSVVIVF 171

Query:   278 HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT 337
             HNEG+S+LMRTVHS+IKRTP +YL EI+L+DDFS+K  L ++L+DYI+++NG V++ RN 
Sbjct:   172 HNEGWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKVHLKERLDDYIKQWNGLVKVFRNE 231

Query:   338 EREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY 396
              REGLI+ RS GA++++ G+V+V+LDAHCEVG+NW  PL+API  DR   TVP+ID ID 
Sbjct:   232 RREGLIQARSIGAQKAKLGQVLVYLDAHCEVGINWYAPLIAPISKDRTTCTVPLIDYIDG 291

Query:   397 QTWEFRSVY--EPDHHYRGIFEWGMLYKENELPEREAKKRKY 436
               +        + D   RG ++W +L+K   L  +E  KRK+
Sbjct:   292 NDYSIEPQQGGDEDGFARGAWDWSLLWKRIPLSHKEKSKRKH 333

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0006493 "protein O-linked glycosylation" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O61397	GALT7_CAEEL	2, ., 4, ., 1, ., -	0.5691	0.5489	0.4009	yes	N/A
Q86SF2	GALT7_HUMAN	2, ., 4, ., 1, ., -	0.5019	0.5603	0.3744	yes	N/A
Q80VA0	GALT7_MOUSE	2, ., 4, ., 1, ., -	0.5098	0.5603	0.3744	yes	N/A
Q9R0C5	GALT7_RAT	2, ., 4, ., 1, ., -	0.5098	0.5603	0.3744	yes	N/A
Q5RFJ6	GALT7_PONAB	2, ., 4, ., 1, ., -	0.5019	0.5603	0.3744	yes	N/A
Q8MV48	GALT7_DROME	2, ., 4, ., 1, ., -	0.616	0.5694	0.4230	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!
4th Layer	2.4.1.80	LOW CONFIDENCE prediction!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	439
cd02510	299	cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the fo	3e-96
cd02510	299	cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the fo	1e-76
pfam00535	168	pfam00535, Glycos_transf_2, Glycosyl transferase f	1e-22
pfam00535	168	pfam00535, Glycos_transf_2, Glycosyl transferase f	3e-13
cd00761	156	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase	2e-12
cd02525	249	cd02525, Succinoglycan_BP_ExoA, ExoA is involved i	1e-09
COG0463	291	COG0463, WcaA, Glycosyltransferases involved in ce	2e-08
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	2e-08
cd06423	180	cd06423, CESA_like, CESA_like is the cellulose syn	9e-08
TIGR03965	467	TIGR03965, mycofact_glyco, mycofactocin system gly	3e-07
cd04186	166	cd04186, GT_2_like_c, Subfamily of Glycosyltransfe	6e-07
cd04192	229	cd04192, GT_2_like_e, Subfamily of Glycosyltransfe	9e-07
TIGR03965	467	TIGR03965, mycofact_glyco, mycofactocin system gly	2e-06
pfam10111	278	pfam10111, Glyco_tranf_2_2, Glycosyltransferase li	2e-06
pfam02709	78	pfam02709, Glyco_transf_7C, N-terminal domain of g	4e-06
pfam13641	229	pfam13641, Glyco_tranf_2_3, Glycosyltransferase li	4e-06
cd04179	185	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_l	7e-06
cd00761	156	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase	1e-05
COG1216	305	COG1216, COG1216, Predicted glycosyltransferases [	1e-05
COG1216	305	COG1216, COG1216, Predicted glycosyltransferases [	2e-05
cd04188	211	cd04188, DPG_synthase, DPG_synthase is involved in	2e-05
cd02525	249	cd02525, Succinoglycan_BP_ExoA, ExoA is involved i	3e-05
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	3e-04
cd04186	166	cd04186, GT_2_like_c, Subfamily of Glycosyltransfe	3e-04
pfam10111	278	pfam10111, Glyco_tranf_2_2, Glycosyltransferase li	5e-04
cd06442	224	cd06442, DPM1_like, DPM1_like represents putative	5e-04
cd04184	202	cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC	0.003
cd06439	251	cd06439, CESA_like_1, CESA_like_1 is a member of t	0.003
cd04187	181	cd04187, DPM1_like_bac, Bacterial DPM1_like enzyme	0.004

>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

 Score =  290 bits (745), Expect = 3e-96
 Identities = 96/183 (52%), Positives = 130/183 (71%), Gaps = 4/183 (2%)

Query: 1   DLDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPP 60
           +L   LE+Y +++  KV+++R  +REGLIR R  GA+ + G+V+VFLD+HCEV + WL P
Sbjct: 44  ELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEP 103

Query: 61  LLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKR 120
           LLA I  +RK +  P+ID ID  T+E+R         RG F+W + +K   LPE E ++R
Sbjct: 104 LLARIAENRKTVVCPIIDVIDADTFEYRGSSGDA---RGGFDWSLHFKWLPLPEEE-RRR 159

Query: 121 KYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPC 180
           +  + P +SPT AGGLFA+DR +FLELGGYD G+ +WGGEN ELSFK+W CGGSIE VPC
Sbjct: 160 ESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPC 219

Query: 181 SRI 183
           SR+
Sbjct: 220 SRV 222

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. Length = 299

>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

 Score =  240 bits (615), Expect = 1e-76
 Identities = 81/159 (50%), Positives = 111/159 (69%), Gaps = 3/159 (1%)

Query: 272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKV 331
           SVI++FHNE  S+L+RTVHS+I RTP + L+EIILVDDFS K +L   LE+Y +++  KV
Sbjct: 1   SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKV 60

Query: 332 RLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 391
           +++R  +REGLIR R  GA+ + G+V+VFLD+HCEV + WL PLLA I  +RK +  P+I
Sbjct: 61  KVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPII 120

Query: 392 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 430
           D ID  T+E+R         RG F+W + +K   LPE E
Sbjct: 121 DVIDADTFEYRGSSGDA---RGGFDWSLHFKWLPLPEEE 156

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. Length = 299

>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2

 Score = 93.7 bits (233), Expect = 1e-22
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKV 331
           SVI+  +NE    L  T+ S++ +T   +  EII+VDD  S     +  E+Y +  + +V
Sbjct: 1   SVIIPTYNEE-KYLEETLESLLNQTYKNF--EIIVVDD-GSTDGTVEIAEEYAKN-DPRV 55

Query: 332 RLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI 391
           R+IR  E  G    R+ G K + G+ I FLDA  EV  +WL  L+  +  +   + +   
Sbjct: 56  RVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELLEKNGADIVIGSR 115

Query: 392 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENEL 426
             I+ +T  +      +                 L
Sbjct: 116 VVINGETRLYGRALRFELLLLLGKLGARSLGLKVL 150

Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids. Length = 168

>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2

 Score = 67.1 bits (164), Expect = 3e-13
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 15/139 (10%)

Query: 6   LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 65
            E+Y +  + +VR+IR  E  G    R+ G K + G+ I FLDA  EV  +WL  L+  +
Sbjct: 45  AEEYAKN-DPRVRVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELL 103

Query: 66  YSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSE 125
             +   + +     I+ +T  +                 + ++   L  +   +      
Sbjct: 104 EKNGADIVIGSRVVINGETRLYG--------------RALRFELLLLLGKLGARSLGLKV 149

Query: 126 PYKSPTHAGGLFAMDRAFF 144
            +   ++A     +     
Sbjct: 150 LFLIGSNALYRREVLEELL 168

Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids. Length = 168

>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 5/113 (4%)

Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR 332
           VI+  +NE    L R + S++ +T   +  E+I+VDD S+   L + LE+Y ++   +V 
Sbjct: 1   VIIPAYNEE-PYLERCLESLLAQTYPNF--EVIVVDDGSTDGTL-EILEEYAKKDP-RVI 55

Query: 333 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 385
            + N E +GL   R+ G K +RGE I+FLDA   +  +WL  L+A + +D + 
Sbjct: 56  RVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEA 108

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities. Length = 156

>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 26/105 (24%), Positives = 55/105 (52%), Gaps = 8/105 (7%)

Query: 270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG 329
             S+I+   NE    +   + S++ ++  + L EII+VD  S+    +  +++Y  +   
Sbjct: 1   FVSIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTRE-IVQEYAAKDP- 57

Query: 330 KVRLIRNTEREGLIRT--RSRGAKESRGEVIVFLDAHCEVGLNWL 372
           ++RLI N      I++   + G + SRG++I+ +DAH     +++
Sbjct: 58  RIRLIDN---PKRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKDYI 99

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. Length = 249

>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR 326
            +PK SV++  +NE    L   + S++ +T   +  EII+VDD S+     +   +Y  +
Sbjct: 1   MMPKVSVVIPTYNEE-EYLPEALESLLNQTYKDF--EIIVVDDGSTD-GTTEIAIEYGAK 56

Query: 327 FNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM 386
            + +V  + N    GL   R+ G + +RG+ IVFLDA  +     L PL+A       I 
Sbjct: 57  -DVRVIRLINERNGGLGAARNAGLEYARGDYIVFLDAD-DQHPPELIPLVAAGGDGDYIA 114

Query: 387 TVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREA 431
            +   D I         + +   +          + +  L  R+A
Sbjct: 115 RLDDRDDIWLPRKLLSKLVKLLGNRLLGVLIPDGFGDLRLLVRDA 159

Length = 291

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 263 DYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED 322
           D    LPK SVI+  +NE    L  T+ S++ +   +Y  E+I+VDD  S  +  + LE+
Sbjct: 48  DADKLLPKVSVIIPAYNEEPEVLEETLESLLSQDYPRY--EVIVVDD-GSTDETYEILEE 104

Query: 323 YIQRFNGKVRLIR-NTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 381
               +    R+I    +  G     + G K ++G+V+V LDA      + L  L++P   
Sbjct: 105 LGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFED 164

Query: 382 DRKIMTV 388
                 V
Sbjct: 165 PPVGAVV 171

Length = 439

>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 30/113 (26%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR 332
           +I+  +NE  + + RT+ S++     +   E+I+VDD  S  D  + LE+    +  +V 
Sbjct: 1   IIVPAYNEE-AVIERTIESLLALDYPKL--EVIVVDD-GSTDDTLEILEELAALYIRRVL 56

Query: 333 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 385
           ++R+ E  G     + G + ++G+++V LDA   +  + L  L+ P ++D K+
Sbjct: 57  VVRDKENGGKAGALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKV 109

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan. Length = 180

>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 21/169 (12%)

Query: 17  VRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV 76
           VR+IR+  R+G    R+ GA+ +R E + F D+       WL  LLA        +  P 
Sbjct: 131 VRVIRHPRRQGPAAARNAGARAARTEFVAFTDSDVVPRPGWLRALLAHFDDPGVALVAPR 190

Query: 77  IDGID-YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGG 135
           +  +    T   R  YE     R   + G           EA  R      Y  P+ A  
Sbjct: 191 VVALPAEDTRLAR--YE---AVRSSLDLG---------PEEAVVRPRGPVSY-VPSAA-- 233

Query: 136 LFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIV 184
              + R   LE+GG+D  L V  GE+ +L +++   GG + + P + + 
Sbjct: 234 -LLVRRRALLEVGGFDERLEV--GEDVDLCWRLCEAGGRVRYEPAAVVA 279

Members of this protein family are putative glycosyltransferases, members of pfam00535 (glycosyl transferase family 2). Members appear mostly in the Actinobacteria, where they appear to be part of a system for converting a precursor peptide (TIGR03969) into a novel redox carrier designated mycofactocin. A radical SAM enzyme, TIGR03962, is a proposed to be a key maturase for mycofactocin. Length = 467

>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 8/113 (7%)

Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR 332
           +I+V +N     L   + S++ +T   +  E+I+VD+ S+   ++      ++    +VR
Sbjct: 1   IIIVNYN-SLEYLKACLDSLLAQTYPDF--EVIVVDNASTDGSVE-----LLRELFPEVR 52

Query: 333 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI 385
           LIRN E  G     ++G +E++G+ ++ L+    V    L  LL     D  +
Sbjct: 53  LIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDV 105

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 166

>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 18/116 (15%)

Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGK-- 330
           V++   NE   +L R + S+      +   E+ILVDD S+    D      ++    K  
Sbjct: 1   VVIAARNEA-ENLPRLLQSLSALDYPKEKFEVILVDDHST----DGT-VQILEFAAAKPN 54

Query: 331 --VRLIRNTEREG-----LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI 379
             ++++ N+          + T     K ++G+ IV  DA C V  NWL   +A I
Sbjct: 55  FQLKILNNSRVSISGKKNALTT---AIKAAKGDWIVTTDADCVVPSNWLLTFVAFI 107

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 229

>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 10/159 (6%)

Query: 221 PEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNE 280
           P A R  G    G   +  ETS   +  R + D  +   +        P  +V++   N 
Sbjct: 29  PAAARLLGGGRGGGLEVRDETS--AALLRRLLDSGVVHPR-PALLPSPPSVTVVVPVRNR 85

Query: 281 GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTER 339
             + L R + +++     +   E+I+VDD S        +     R     VR+IR+  R
Sbjct: 86  P-AGLARLLAALLALDYPRDRLEVIVVDDGSEDP-----VPTRAARGARLPVRVIRHPRR 139

Query: 340 EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAP 378
           +G    R+ GA+ +R E + F D+       WL  LLA 
Sbjct: 140 QGPAAARNAGARAARTEFVAFTDSDVVPRPGWLRALLAH 178

Members of this protein family are putative glycosyltransferases, members of pfam00535 (glycosyl transferase family 2). Members appear mostly in the Actinobacteria, where they appear to be part of a system for converting a precursor peptide (TIGR03969) into a novel redox carrier designated mycofactocin. A radical SAM enzyme, TIGR03962, is a proposed to be a key maturase for mycofactocin. Length = 467

>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 25/171 (14%)

Query: 3   DKKLEDYIERFNGKVRLIRNTERE--GLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPP 60
            K+L+  I +      +   T ++     + R+RGA+ S  + I FLD  C +  + L  
Sbjct: 49  AKELKKIIAKNGAINYISHKTHKDLFSPAKARNRGAEYSSSDFIFFLDVDCLISPDTLEK 108

Query: 61  LLAPIYSDRKI----MTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE 116
           ++      +      + +P +      +  F S ++       I E              
Sbjct: 109 IIKHFQELQTNPNAFLALPCLYLSKEGSEIFLSDFKYLLREE-ILE-------------- 153

Query: 117 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFK 167
                  +        A     ++R FFL++GG+D      GGE+FEL ++
Sbjct: 154 ----DAITGKSTFFALASSCILINRDFFLKIGGFDENFRGHGGEDFELLYR 200

Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis. Length = 278

>gnl|CDD|217196 pfam02709, Glyco_transf_7C, N-terminal domain of galactosyltransferase

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 127 YKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIV 184
                + GG+ A  +  FL++ G+      WGGE+ +L  ++ + G  IE    +   
Sbjct: 14  LPYKGYFGGVLAFSKEDFLKVNGFSNNFWGWGGEDDDLYARLLLAGLKIERPKFAIGR 71

This is the N-terminal domain of a family of galactosyltransferases from a wide range of Metazoa with three related galactosyltransferases activities, all three of which are possessed by one sequence in some cases. EC:2.4.1.90, N-acetyllactosamine synthase; EC:2.4.1.38, Beta-N-acetylglucosaminyl-glycopeptide beta-1,4- galactosyltransferase; and EC:2.4.1.22 Lactose synthase. Note that N-acetyllactosamine synthase is a component of Lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin EC:2.4.1.90 is the catalyzed reaction. Length = 78

>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 28/171 (16%)

Query: 14  NGKVRLIRNTEREGLIRTRSRGAKE----SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 69
           + +V ++R     G    ++R   E     + +++V LDA   V  + L  LL    S  
Sbjct: 57  DVRVHVVRRPRPPG-PTGKARALNEALRAIKSDLVVLLDADSVVDPDTLRRLLPFFLSKG 115

Query: 70  KIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGML-YKENELPEREAKKRKYNSEPYK 128
                  +  +  Q   F       +    +     L +    L     ++         
Sbjct: 116 -------VGAV--QGPVF-----VLNLRTAVAPLYALEFALRHLRFMALRRA------LG 155

Query: 129 SPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVP 179
               AG      R+   E+GG+DPG L+   E+ EL  ++   G    +VP
Sbjct: 156 VAPLAGSGSLFRRSVLEEIGGFDPGFLLG--EDKELGLRLRRAGWRTAYVP 204

Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis. Length = 229

>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD---QKLEDYIQRFNG 329
           V++  +NE   ++   V  ++      Y  EII+VDD S+    D   +   +   R   
Sbjct: 1   VVIPAYNEE-ENIPELVERLLAVLEEGYDYEIIVVDDGST----DGTAEIARELAAR-VP 54

Query: 330 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
           +VR+IR +   G       G K +RG+++V +DA
Sbjct: 55  RVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDA 88

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 185

>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 4   KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA 63
           + LE+Y ++   +V  + N E +GL   R+ G K +RGE I+FLDA   +  +WL  L+A
Sbjct: 42  EILEEYAKKDP-RVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVA 100

Query: 64  PIYSDRKI 71
            + +D + 
Sbjct: 101 ELLADPEA 108

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities. Length = 156

>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 10/149 (6%)

Query: 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN 328
           PK S+I+V +N G   L+  + S+  +T     + I++VD+ S+    D  LE    RF 
Sbjct: 3   PKISIIIVTYNRG-EDLVECLASLAAQTY--PDDVIVVVDNGST----DGSLEALKARFF 55

Query: 329 GKVRLIRNTEREGLIRTRSRGAKESRGEV---IVFLDAHCEVGLNWLPPLLAPIYSDRKI 385
             VRLI N E  G     +RG K +  +    ++ L+    V  + L  LL     D   
Sbjct: 56  PNVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAA 115

Query: 386 MTVPVIDGIDYQTWEFRSVYEPDHHYRGI 414
             V  +     ++              G 
Sbjct: 116 GVVGPLIRNYDESLYIDRRGGESDGLTGG 144

Length = 305

>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 13/185 (7%)

Query: 3   DKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEV---IVFLDAHCEVGLNWLP 59
           D  LE    RF   VRLI N E  G     +RG K +  +    ++ L+    V  + L 
Sbjct: 44  DGSLEALKARFFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLE 103

Query: 60  PLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKK 119
            LL     D     V  +     ++             RG    G+       P  E   
Sbjct: 104 ELLKAAEEDPAAGVVGPLIRNYDESLYI--------DRRGGESDGLTGGWRASPLLE-IA 154

Query: 120 RKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVP 179
              +S      + +G    + R  F ++GG+D    ++  E+ +L  +    G  I +VP
Sbjct: 155 PDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIY-YEDVDLCLRARKAGYKIYYVP 213

Query: 180 CSRIV 184
            + I 
Sbjct: 214 DAIIY 218

Length = 305

>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 303 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 362
           EII+VDD  SK    +      ++    +R++   +  G       G   +RG+ I+F D
Sbjct: 32  EIIVVDD-GSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFAD 90

Query: 363 A 363
           A
Sbjct: 91  A 91

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. Length = 211

>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 35/195 (17%)

Query: 6   LEDYIERFNGKVRLIRNTEREGLIRT--RSRGAKESRGEVIVFLDAHCEVGLNWLPPLL- 62
           +++Y  +   ++RLI N      I++   + G + SRG++I+ +DAH     +++  L+ 
Sbjct: 49  VQEYAAKDP-RIRLIDN---PKRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVE 104

Query: 63  APIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKY 122
           A   +    +  P+      ++   +++        G                      Y
Sbjct: 105 ALKRTGADNVGGPME--TIGESKFQKAIAVAQSSPLGS-----------------GGSAY 145

Query: 123 NSEPYK----SPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWV 178
                K       H G   A  R  F ++GG+D  L+    E+ EL++++   G  I   
Sbjct: 146 RGGAVKIGYVDTVHHG---AYRREVFEKVGGFDESLVR--NEDAELNYRLRKAGYKIWLS 200

Query: 179 PCSRIVSLIRPVFKA 193
           P  R+    R   K 
Sbjct: 201 PDIRVYYYPRSTLKK 215

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. Length = 249

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 27/188 (14%)

Query: 4   KKLEDYIERFNGKVRLIR-NTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLL 62
           + LE+    +    R+I    +  G     + G K ++G+V+V LDA      + L  L+
Sbjct: 100 EILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELV 159

Query: 63  APIYSDRKIMTV--PVID-GIDYQTWEFRS-VYEPDHHYRGIFEWGMLYKENELPEREAK 118
           +P         V  P I    D      R    E    +                     
Sbjct: 160 SPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGG---------- 209

Query: 119 KRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWV 178
                         +G   A  R+   E+GG+    +    E+ +L+ ++ + G  + +V
Sbjct: 210 ---------LISFLSGSSSAFRRSALEEVGGWLEDTI---TEDADLTLRLHLRGYRVVYV 257

Query: 179 PCSRIVSL 186
           P + + + 
Sbjct: 258 PEAIVWTE 265

Length = 439

>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 55/177 (31%)

Query: 8   DYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 67
           + +     +VRLIRN E  G     ++G +E++G+ ++ L+    V    L  LL     
Sbjct: 42  ELLRELFPEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQ 101

Query: 68  DRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPY 127
           D                                 + G++                     
Sbjct: 102 DP--------------------------------DVGIV--------------------- 108

Query: 128 KSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIV 184
             P  +G    + R  F E+GG+D    ++  E+ +L  +  + G  + +VP + I 
Sbjct: 109 -GPKVSGAFLLVRREVFEEVGGFDEDFFLYY-EDVDLCLRARLAGYRVLYVPQAVIY 163

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 166

>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 272 SVIL-VFHNEGFSSLMRTVHSIIKRT---PAQYLEEIILVDDFSSKADLDQKLEDYIQRF 327
           SVI+ V+ +     +++ + S + R     +    EII+VD  S  +   ++L+  I + 
Sbjct: 1   SVIIPVYLSLRTRDILKRLQSCLNRLSYFLSDPDVEIIVVDGDSPLSF-AKELKKIIAKN 59

Query: 328 NGKVRLIRNTERE--GLIRTRSRGAKESRGEVIVFLDAHC 365
                +   T ++     + R+RGA+ S  + I FLD  C
Sbjct: 60  GAINYISHKTHKDLFSPAKARNRGAEYSSSDFIFFLDVDC 99

Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis. Length = 278

>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 303 EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 362
           EII+VDD S   D   ++   + +   +VRLI    + GL      G K +RG+VIV +D
Sbjct: 29  EIIVVDDNS--PDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMD 86

Query: 363 A 363
           A
Sbjct: 87  A 87

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 224

>gnl|CDD|133027 cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLE--EIILVDDFSSKADLDQKLEDYIQR 326
           P  S+++  +N     L   + S+     AQ     E+ + DD S+  ++ + L+ Y  +
Sbjct: 1   PLISIVMPVYNTPEKYLREAIESVR----AQTYPNWELCIADDASTDPEVKRVLKKYAAQ 56

Query: 327 FNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD 362
            + +++++   E  G+    +   + + GE +  LD
Sbjct: 57  -DPRIKVVFREENGGISAATNSALELATGEFVALLD 91

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 202

>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 23/105 (21%)

Query: 268 LPKASVILVFHNEGFSSLMRTVHSIIKRT---------PAQYLEEIILVDDFSSKADLDQ 318
           LP  ++I+  +NE          ++I+           P   LE II+V D  S     +
Sbjct: 28  LPTVTIIIPAYNE---------EAVIEAKLENLLALDYPRDRLE-IIVVSD-GSTDGTAE 76

Query: 319 KLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
              +Y  +    V+L+R  ER G     +R    + GE++VF DA
Sbjct: 77  IAREYADK---GVKLLRFPERRGKAAALNRALALATGEIVVFTDA 118

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Length = 251

>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1

 Score = 37.8 bits (89), Expect = 0.004
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 12/96 (12%)

Query: 273 VILVFHNE--GFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD---QKLEDYIQRF 327
           +++  +NE      L   + ++++     Y  EII VDD S+    D   + L +   R 
Sbjct: 1   IVVPVYNEEENLPELYERLKAVLESLGYDY--EIIFVDDGST----DRTLEILRELAAR- 53

Query: 328 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
           + +V++IR +   G       G   +RG+ ++ +DA
Sbjct: 54  DPRVKVIRLSRNFGQQAALLAGLDHARGDAVITMDA 89

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	439
KOG3737|consensus	603		100.0
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	99.97
KOG3738|consensus	559		99.96
KOG3736|consensus	578		99.96
KOG3737|consensus	603		99.96
KOG3736|consensus	578		99.95
KOG3738|consensus	559		99.94
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	99.91
COG1216	305	Predicted glycosyltransferases [General function p	99.89
PRK10073	328	putative glycosyl transferase; Provisional	99.87
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	99.85
PF10111	281	Glyco_tranf_2_2: Glycosyltransferase like family 2	99.85
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	99.83
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	99.83
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	99.83
PRK10018	279	putative glycosyl transferase; Provisional	99.82
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	99.82
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	99.82
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	99.82
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	99.82
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	99.81
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	99.81
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	99.81
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	99.81
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	99.81
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	99.8
PRK11204	420	N-glycosyltransferase; Provisional	99.8
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	99.8
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	99.8
PRK14583	444	hmsR N-glycosyltransferase; Provisional	99.8
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	99.8
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	99.79
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	99.79
cd06913	219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	99.79
PRK10063	248	putative glycosyl transferase; Provisional	99.79
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	99.79
cd06913	219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	99.79
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	99.79
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	99.79
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	99.79
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	99.78
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	99.78
PTZ00260	333	dolichyl-phosphate beta-glucosyltransferase; Provi	99.78
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	99.77
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	99.77
PRK11204	420	N-glycosyltransferase; Provisional	99.76
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	99.76
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	99.76
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	99.76
PRK13915	306	putative glucosyl-3-phosphoglycerate synthase; Pro	99.74
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	99.74
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	99.74
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	99.74
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	99.74
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	99.74
PRK14583	444	hmsR N-glycosyltransferase; Provisional	99.74
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	99.73
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	99.73
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	99.73
cd06436	191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	99.73
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	99.73
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	99.72
cd06438	183	EpsO_like EpsO protein participates in the methano	99.72
KOG2978|consensus	238		99.71
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	99.71
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	99.71
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	99.71
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	99.71
cd02511	229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	99.7
cd02522	221	GT_2_like_a GT_2_like_a represents a glycosyltrans	99.69
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	99.69
PRK11498	852	bcsA cellulose synthase catalytic subunit; Provisi	99.68
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	99.67
TIGR03030	713	CelA cellulose synthase catalytic subunit (UDP-for	99.67
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	99.67
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	99.66
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	99.66
COG1215	439	Glycosyltransferases, probably involved in cell wa	99.65
COG0463	291	WcaA Glycosyltransferases involved in cell wall bi	99.64
cd02522	221	GT_2_like_a GT_2_like_a represents a glycosyltrans	99.63
COG1216	305	Predicted glycosyltransferases [General function p	99.62
PRK10018	279	putative glycosyl transferase; Provisional	99.62
PRK11498	852	bcsA cellulose synthase catalytic subunit; Provisi	99.62
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	99.62
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	99.61
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	99.61
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	99.6
TIGR03030	713	CelA cellulose synthase catalytic subunit (UDP-for	99.58
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	99.54
PRK10073	328	putative glycosyl transferase; Provisional	99.54
PRK10063	248	putative glycosyl transferase; Provisional	99.54
cd04190	244	Chitin_synth_C C-terminal domain of Chitin Synthas	99.54
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	99.53
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	99.53
PF10111	281	Glyco_tranf_2_2: Glycosyltransferase like family 2	99.5
cd04191	254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	99.49
PRK14716	504	bacteriophage N4 adsorption protein B; Provisional	99.48
COG1215	439	Glycosyltransferases, probably involved in cell wa	99.46
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	99.45
PF13712	217	Glyco_tranf_2_5: Glycosyltransferase like family;	99.45
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	99.44
KOG2977|consensus	323		99.43
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	99.43
cd04190	244	Chitin_synth_C C-terminal domain of Chitin Synthas	99.41
PF13632	193	Glyco_trans_2_3: Glycosyl transferase family group	99.38
PRK11234	727	nfrB bacteriophage N4 adsorption protein B; Provis	99.38
cd04191	254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	99.37
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	99.36
PRK05454	691	glucosyltransferase MdoH; Provisional	99.34
PF13506	175	Glyco_transf_21: Glycosyl transferase family 21	99.29
PF02709	78	Glyco_transf_7C: N-terminal domain of galactosyltr	99.24
cd00899	219	b4GalT Beta-4-Galactosyltransferase is involved in	99.24
PRK14716	504	bacteriophage N4 adsorption protein B; Provisional	99.23
cd06438	183	EpsO_like EpsO protein participates in the methano	99.2
PRK15489	703	nfrB bacteriophage N4 adsorption protein B; Provis	99.19
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	99.12
cd06436	191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	99.05
PTZ00260	333	dolichyl-phosphate beta-glucosyltransferase; Provi	99.03
cd02514	334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	98.99
PRK11234	727	nfrB bacteriophage N4 adsorption protein B; Provis	98.96
PRK05454	691	glucosyltransferase MdoH; Provisional	98.91
PRK15489	703	nfrB bacteriophage N4 adsorption protein B; Provis	98.77
PRK13915	306	putative glucosyl-3-phosphoglycerate synthase; Pro	98.76
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	98.74
KOG3588|consensus	494		98.69
KOG2547|consensus	431		98.64
COG4092	346	Predicted glycosyltransferase involved in capsule	98.53
KOG2978|consensus	238		98.51
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	98.48
cd02511	229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	98.31
PF13712	217	Glyco_tranf_2_5: Glycosyltransferase like family;	98.24
PF11397	343	GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IP	98.21
KOG3916|consensus	372		98.0
PF13704	97	Glyco_tranf_2_4: Glycosyl transferase family 2	97.89
PF03142	527	Chitin_synth_2: Chitin synthase; InterPro: IPR0048	97.85
PLN02893	734	Cellulose synthase-like protein	97.79
PF03452	269	Anp1: Anp1; InterPro: IPR005109 The members of thi	97.72
cd02514	334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	97.64
PF13506	175	Glyco_transf_21: Glycosyl transferase family 21	97.45
PF06306	347	CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (	97.44
PF03071	434	GNT-I: GNT-I family; InterPro: IPR004139 The biosy	97.44
COG4092	346	Predicted glycosyltransferase involved in capsule	97.18
PF13896	317	Glyco_transf_49: Glycosyl-transferase for dystrogl	97.15
COG0463	291	WcaA Glycosyltransferases involved in cell wall bi	97.11
KOG2547|consensus	431		96.99
COG2943	736	MdoH Membrane glycosyltransferase [Cell envelope b	96.96
PF03142	527	Chitin_synth_2: Chitin synthase; InterPro: IPR0048	96.9
PF09488	381	Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthas	96.83
PF11316	234	Rhamno_transf: Putative rhamnosyl transferase ; In	96.54
KOG3917|consensus	310		96.31
TIGR02460	381	osmo_MPGsynth mannosyl-3-phosphoglycerate synthase	96.2
PRK14503	393	mannosyl-3-phosphoglycerate synthase; Provisional	96.17
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	96.04
KOG2977|consensus	323		95.48
PF11735	241	CAP59_mtransfer: Cryptococcal mannosyltransferase	95.41
PF09258	247	Glyco_transf_64: Glycosyl transferase family 64 do	95.35
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	95.01
cd00218	223	GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I)	94.72
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	94.56
KOG1476|consensus	330		94.52
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	94.52
KOG2571|consensus	862		94.49
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	94.4
PF03214	348	RGP: Reversibly glycosylated polypeptide; InterPro	94.37
KOG3588|consensus	494		94.32
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	93.92
PF03452	269	Anp1: Anp1; InterPro: IPR005109 The members of thi	93.91
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	93.8
PLN02458	346	transferase, transferring glycosyl groups	93.68
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	93.63
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	93.4
PF01762	195	Galactosyl_T: Galactosyltransferase; InterPro: IPR	93.09
PLN02195	977	cellulose synthase A	93.06
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	93.06
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	92.97
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	92.85
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	92.84
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	92.45
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	92.38
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	92.38
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	92.28
PLN02189	1040	cellulose synthase	92.13
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	92.0
PLN02893	734	Cellulose synthase-like protein	91.87
PF13632	193	Glyco_trans_2_3: Glycosyl transferase family group	91.32
PLN02189	1040	cellulose synthase	91.21
PF13733	136	Glyco_transf_7N: N-terminal region of glycosyl tra	91.21
cd06431	280	GT8_LARGE_C LARGE catalytic domain has closest hom	91.16
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	90.98
PF01697	285	Glyco_transf_92: Glycosyltransferase family 92; In	90.93
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	90.74
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	90.64
PF04666	297	Glyco_transf_54: N-Acetylglucosaminyltransferase-I	90.63
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	90.39
PLN02917	293	CMP-KDO synthetase	90.11
PF11397	343	GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IP	89.91
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	89.84
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	89.82
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	89.82
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	89.81
KOG1413|consensus	411		89.7
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	89.65
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	89.52
cd00899	219	b4GalT Beta-4-Galactosyltransferase is involved in	89.42
PLN02248	1135	cellulose synthase-like protein	89.32
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	89.09
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	88.96
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	88.78
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	88.59
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	88.55
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	88.54
PLN03180	346	reversibly glycosylated polypeptide; Provisional	88.47
cd00505	246	Glyco_transf_8 Members of glycosyltransferase fami	88.38
COG2068	199	Uncharacterized MobA-related protein [General func	88.3
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	88.28
PLN02917	293	CMP-KDO synthetase	87.53
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	87.53
PLN02190	756	cellulose synthase-like protein	87.39
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	87.15
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	86.81
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	86.46
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	86.26
PLN03153	537	hypothetical protein; Provisional	86.21
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	86.13
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	85.98
PF03214	348	RGP: Reversibly glycosylated polypeptide; InterPro	85.9
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	85.58
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	85.29
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	85.2
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	85.17
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	85.1
KOG3916|consensus	372		85.08
COG2943	736	MdoH Membrane glycosyltransferase [Cell envelope b	85.01
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	85.0
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	84.88
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	84.52
PLN02190	756	cellulose synthase-like protein	84.44
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	84.37
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	83.73
PF02434	252	Fringe: Fringe-like; InterPro: IPR003378 The Notch	83.7
cd04194	248	GT8_A4GalT_like A4GalT_like proteins catalyze the	83.57
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	83.12
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	83.07
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	83.07
PF13896	317	Glyco_transf_49: Glycosyl-transferase for dystrogl	83.05
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	82.94
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	82.91
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	82.89
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	82.68
KOG1022|consensus	691		82.37
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	81.71
PF03552	720	Cellulose_synt: Cellulose synthase; InterPro: IPR0	81.55
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	81.28
PRK15171	334	lipopolysaccharide 1,3-galactosyltransferase; Prov	81.24
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	81.0
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	80.94
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	80.69
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	80.33

>KOG3737|consensus

Probab=100.00  E-value=2.2e-35  Score=267.11  Aligned_cols=243  Identities=59%  Similarity=1.011  Sum_probs=230.6

Q ss_pred             cCCCCCCCCCC-CCCCCCCCCccccCcHhHHhhhhhhhhhcccceecccccCCCCCCCcccccccccccCCCCCCceEEE
Q psy8674         196 KLGNLEPPLEP-YKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVI  274 (439)
Q Consensus       196 ~~~~~~~~~~~-~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vsii  274 (439)
                      .++++.++.|. ...++|..|+|..+.++...+.++..+++|+|.+.||.++++|.++|.|+..|+...||..+|+.|||
T Consensus        81 ~LGNfEPKepe~P~~gPGE~gkp~~l~pe~k~a~~AsekEfGfN~~~SDmISm~R~v~D~R~EECkhWdYpe~Lpt~SVv  160 (603)
T KOG3737|consen   81 ILGNFEPKEPEPPVGGPGEKGKPLVLGPEFKQAIQASEKEFGFNMVASDMISMDRNVNDLRQEECKHWDYPENLPTSSVV  160 (603)
T ss_pred             ccCCCCCCCCCCCCCCCCcCCcccccChhHHHHHHHHHHhhCcceeehhhhhcccCccccCHhhccccCCcccCCcceEE
Confidence            38999998864 55689999999999888888889999999999999999999999999999999999999999999999


Q ss_pred             EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC
Q psy8674         275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR  354 (439)
Q Consensus       275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~  354 (439)
                      |+.+|+.|..|.+++.|++..+++.+..|||+|||-|+.+.+.+.+++|...+.+.|++++++++.|...|+-.|+..|+
T Consensus       161 iVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGlVkV~Rne~REGLI~aRSiGA~~at  240 (603)
T KOG3737|consen  161 IVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGLVKVFRNERREGLIQARSIGAQKAT  240 (603)
T ss_pred             EEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcCEEEEEecchhhhhhhhhccchhhcc
Confidence            99999999999999999999998888889999999999999999999999999989999999999999999999999999


Q ss_pred             CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCCCC-CceeeeeccceeEeecCCHHHHhh
Q psy8674         355 GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDH-HYRGIFEWGMLYKENELPEREAKK  433 (439)
Q Consensus       355 ~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~w~~~~~~~~~~~~~~~~  433 (439)
                      |+.++|||+.|++..+|+..|++++.++..++.+|.||.||.++|+|.+.||+.. +++|.|+|+|.+++.+++.+|..+
T Consensus       241 GeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLyKe~~~t~rE~r~  320 (603)
T KOG3737|consen  241 GEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLYKEVPLTPREKRL  320 (603)
T ss_pred             ccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhheeccCCCCHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999866 789999999999999999999998


Q ss_pred             ccCCC
Q psy8674         434 RKYNR  438 (439)
Q Consensus       434 ~~~~~  438 (439)
                      ||-++
T Consensus       321 Rkhns  325 (603)
T KOG3737|consen  321 RKHNS  325 (603)
T ss_pred             hhccC
Confidence            87654

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=99.97  E-value=1.2e-29  Score=240.48  Aligned_cols=174  Identities=53%  Similarity=1.013  Sum_probs=140.2

Q ss_pred             hcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCccccccc
Q psy8674          12 RFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVY   91 (439)
Q Consensus        12 ~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   91 (439)
                      +..++|++|++++|.|+++|+|.|+++|+|+||+|||+|++++|+||+.|++.+.+++..+++|.+...+...+.+....
T Consensus        55 ~~~~~v~vi~~~~n~G~~~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~  134 (299)
T cd02510          55 KYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSS  134 (299)
T ss_pred             hcCCcEEEEEcCCCCCHHHHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCC
Confidence            33358999999999999999999999999999999999999999999999999998888888887766555444433211


Q ss_pred             CCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHh
Q psy8674          92 EPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMC  171 (439)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~  171 (439)
                         ....+.+.|.+.+.+........ .......+..+++++|+||++||++|+++|||||+|++|++||+|||+|++++
T Consensus       135 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~  210 (299)
T cd02510         135 ---GDARGGFDWSLHFKWLPLPEEER-RRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQC  210 (299)
T ss_pred             ---CceeEEecccceeccccCCHHHh-hhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHc
Confidence               11345566655555444433322 22233456678888999999999999999999999998888999999999999


Q ss_pred             CCcEEEecccceeccccc
Q psy8674         172 GGSIEWVPCSRIVSLIRP  189 (439)
Q Consensus       172 G~~i~~~p~~~v~H~~~~  189 (439)
                      |++++++|.+.|.|..+.
T Consensus       211 G~~i~~~p~a~v~H~~~~  228 (299)
T cd02510         211 GGSIEIVPCSRVGHIFRR  228 (299)
T ss_pred             CCeEEEeeccEEEEeccc
Confidence            999999999999999863

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>KOG3738|consensus

Probab=99.96  E-value=7.1e-30  Score=232.04  Aligned_cols=198  Identities=40%  Similarity=0.722  Sum_probs=183.1

Q ss_pred             hhhhhhcccceecccccCCCCCCCcccccccccccCCCCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEe
Q psy8674         229 DASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVD  308 (439)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvd  308 (439)
                      ++.++.+.+|+..|+.+...|.+|++|++.|....|..++|..||||..+||..+.|.+++.|++++++.++..|||+||
T Consensus        84 ed~y~~~~fnq~esd~l~~~r~i~dtRh~qC~~~~y~~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVD  163 (559)
T KOG3738|consen   84 EDPYKANSFNQEESDKLNPTRKIPDTRHPQCRDVDYKVDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVD  163 (559)
T ss_pred             CchhhcCccchhhhhhhCCCCccccccccccccceeecCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEec
Confidence            45567889999999999999999999999999999999999999999999999899999999999999999889999999


Q ss_pred             CCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674         309 DFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV  388 (439)
Q Consensus       309 d~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~  388 (439)
                      |+|.|.+.-..+.++    + +++++++.++.|....++.|+..|++.++.|||+.+++..+||+.|++.+..+...+|+
T Consensus       164 D~S~Dped~~~L~ri----~-kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVs  238 (559)
T KOG3738|consen  164 DFSQDPEDGKLLKRI----P-KVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVS  238 (559)
T ss_pred             CCCCChHHHHHHhhh----h-eeeeecccchhhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceee
Confidence            999988644344433    3 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeecCCCceEEeecCCCCCceeeeeccceeEeecCCHHHHhhc
Q psy8674         389 PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKR  434 (439)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~  434 (439)
                      |+||.|+.++|+|...   +...+|+|||+++|+|+.++-+.+.+|
T Consensus       239 PiiDvIn~dnf~Y~~a---sadLrGGFDWsLhF~We~~~~eqr~sr  281 (559)
T KOG3738|consen  239 PIIDVINLDNFSYVGA---SADLRGGFDWSLHFKWEQMQLEQRESR  281 (559)
T ss_pred             cccccccccccccccc---hhhhcCCcceEEEEEehhcCHHHHhhc
Confidence            9999999999999844   568899999999999999999998887

>KOG3736|consensus

Probab=99.96  E-value=1.9e-29  Score=247.20  Aligned_cols=219  Identities=50%  Similarity=0.841  Sum_probs=198.6

Q ss_pred             CCCCccccCcHhHHhhhhhhhhhcccceecccccCCCCCCCccccccccc-ccCCCCCCceEEEEEecCCChhHHHHHHH
Q psy8674         212 GEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKY-WDYPLDLPKASVILVFHNEGFSSLMRTVH  290 (439)
Q Consensus       212 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~vsiiip~~n~~~~~l~~~l~  290 (439)
                      +..|. ..++.......+..++.+++|.++|+++++.|.+||.|.+.|.. ..+...+|..||||+.+||.+..|.+++.
T Consensus        85 ~~~g~-~~~~~~~~~~~~~~~~~~~~N~~~Sd~I~l~Rsl~D~r~~~C~~~~~~~~~Lp~~Svii~f~nE~~s~llRtv~  163 (578)
T KOG3736|consen   85 GGGGK-VKLPEAEEDLEDEGYEKNAFNALLSDRISLNRSLPDLRHPECKKLKYYSDKLPTTSVIIIFHNEAWSTLLRTVH  163 (578)
T ss_pred             cccCc-ccCCcchHHHHHHHhhcccchhhhhhcccccCCCcchhchhhhhccccccccCCCceEEEEecCCCcchhheEE
Confidence            33444 45556666677777999999999999999999999999999977 44557799999999999999999999999


Q ss_pred             HHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCC
Q psy8674         291 SIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLN  370 (439)
Q Consensus       291 sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~  370 (439)
                      |+.+.+.+.+..|||+|||.|+.......++++.+.+.. +++++.+++.|...|++.|+..|+||.++|||+.+++..+
T Consensus       164 Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~-v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~g  242 (578)
T KOG3736|consen  164 SVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSK-VRILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVG  242 (578)
T ss_pred             eehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcc-eeEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecC
Confidence            999999888888999999999988866678999888774 9999999999999999999999999999999999999999


Q ss_pred             ChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCCCCCceeeeeccceeEeecCCHHHHhhcc
Q psy8674         371 WLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK  435 (439)
Q Consensus       371 ~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~  435 (439)
                      ||+.|++.+..+...+|||+||.|+.++|+|.+.   +...+|+|+|.+.|+|+.+|.++++++.
T Consensus       243 WLePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~---~~~~rGgFdW~l~f~w~~lP~~~~~~~~  304 (578)
T KOG3736|consen  243 WLEPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQ---SELMRGGFDWELTFKWERLPLPEEKRRE  304 (578)
T ss_pred             cchHHHHHhhhcCceeecceEEeecCcCceeccc---CccceeeeecceeEEeccCCccHhhccc
Confidence            9999999999999999999999999999999975   3577999999999999999999998874

>KOG3737|consensus

Probab=99.96  E-value=4e-30  Score=233.09  Aligned_cols=193  Identities=64%  Similarity=1.183  Sum_probs=184.4

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      |+++|++|+..++..+++++++++-|+-.||-+|++.|.|++|+|||+.|+|.-+||..+++.+.++...+.+|.++.++
T Consensus       202 LkekLDeYv~~fnGlVkV~Rne~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId  281 (603)
T KOG3737|consen  202 LKEKLDEYVKLFNGLVKVFRNERREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGID  281 (603)
T ss_pred             HHHHHHHHHHHhcCEEEEEecchhhhhhhhhccchhhccccEEEEEecceeeecccccccccccccCceEEEEeeeeeec
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccCCCC-ccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          82 YQTWEFRSVYEPDH-HYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      ..++++.+.+|+.. ..+|.|.|++.++...++..+...+...++|+++|+..|+.++|.|+.|.++|.|||++.+||+|
T Consensus       282 ~n~~EyrpvyG~dn~h~rGifeWgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGE  361 (603)
T KOG3737|consen  282 GNTYEYRPVYGGDNDHARGIFEWGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGE  361 (603)
T ss_pred             CCceEEeeccCCcchhhcchhhhhheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCcceeecCc
Confidence            99999999988876 68899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhCCcEEEecccceecccccccccC
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPVFKAD  194 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~~~~  194 (439)
                      .++|++++|++|++|.++|.+.|.|.+|...-..
T Consensus       362 nfElSfKIWQCGG~i~fVPCSrVGHvYR~~mpy~  395 (603)
T KOG3737|consen  362 NFELSFKIWQCGGKILFVPCSRVGHVYRSLMPYQ  395 (603)
T ss_pred             ceeEEEEEEeeCCEEEEEEccccchhhhcccccc
Confidence            9999999999999999999999999998665443

>KOG3736|consensus

Probab=99.95  E-value=7.8e-29  Score=242.82  Aligned_cols=183  Identities=53%  Similarity=1.012  Sum_probs=173.7

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +++.|++|++++. .+++++++++.|.-.||++|++.|+||+++|||+.|++..+||+.+++.+.++...+++|.++.++
T Consensus       189 l~~~Ld~y~k~~~-~v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~PvID~Id  267 (578)
T KOG3736|consen  189 LKDKLEEYVKRFS-KVRILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCPVIDVID  267 (578)
T ss_pred             hhhhhHHHHhhhc-ceeEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecceEEeec
Confidence            4566999999998 599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN  161 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED  161 (439)
                      ..++.|...   ....+|+|+|.+.|.|..+|......+..++.|+++|++.|+.|+|.|+.|.++|+||+++.+||+|.
T Consensus       268 ~~tf~y~~~---~~~~rGgFdW~l~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGEN  344 (578)
T KOG3736|consen  268 DNTFEYEKQ---SELMRGGFDWELTFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGEN  344 (578)
T ss_pred             CcCceeccc---CccceeeeecceeEEeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccCccccccccChhh
Confidence            999998864   45677999999999999999888888788899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhCCcEEEecccceecccc
Q psy8674         162 FELSFKIWMCGGSIEWVPCSRIVSLIR  188 (439)
Q Consensus       162 ~Dl~~Rl~~~G~~i~~~p~~~v~H~~~  188 (439)
                      +||++|+|++|+++...|.+.|.|++|
T Consensus       345 lElSfrvWqCGG~lei~PCSrVGHifR  371 (578)
T KOG3736|consen  345 LELSFRVWQCGGRLEIVPCSRVGHIFR  371 (578)
T ss_pred             ceeeEEEeccCCeEEecCccceeeeee
Confidence            999999999999999999999999987

>KOG3738|consensus

Probab=99.94  E-value=8.8e-28  Score=218.46  Aligned_cols=177  Identities=43%  Similarity=0.878  Sum_probs=166.4

Q ss_pred             HHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCccccc
Q psy8674          10 IERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRS   89 (439)
Q Consensus        10 ~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~   89 (439)
                      +.+-+ ++++++|+++.|+-..|++|+..|+|.++.|||+.|++..+||+.|++.+.++...+|+|.++.++.+++.|..
T Consensus       175 L~ri~-kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~  253 (559)
T KOG3738|consen  175 LKRIP-KVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVG  253 (559)
T ss_pred             Hhhhh-eeeeecccchhhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeeccccccccccccccc
Confidence            44554 99999999999999999999999999999999999999999999999999999999999999999999998874


Q ss_pred             ccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHH
Q psy8674          90 VYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIW  169 (439)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~  169 (439)
                         .....+|+|+|.++|+|+..+......+.++..|+++|.+.|+.|+|.|++|.++|.||..+.+||+|.+|+++|+|
T Consensus       254 ---asadLrGGFDWsLhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW  330 (559)
T KOG3738|consen  254 ---ASADLRGGFDWSLHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVW  330 (559)
T ss_pred             ---chhhhcCCcceEEEEEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEE
Confidence               45668899999999999999988888888999999999999999999999999999999999999999999999999


Q ss_pred             HhCCcEEEecccceecccccc
Q psy8674         170 MCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       170 ~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      ++|+.+..+|.++|.|.+|..
T Consensus       331 ~CGGslEIvPCSRVGHVFRkr  351 (559)
T KOG3738|consen  331 QCGGSLEIVPCSRVGHVFRKR  351 (559)
T ss_pred             eeCCeeEEEeccchhhhhhcc
Confidence            999999999999999997543

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=99.91  E-value=3.6e-23  Score=196.05  Aligned_cols=155  Identities=52%  Similarity=0.902  Sum_probs=133.8

Q ss_pred             EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHH-HHHHcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED-YIQRFNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~-~~~~~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      |||||+||+..+.|.+||+|+.+|+++...+|||||||||+|+|.+ ++.+ ......+.+++++.+.|.|++.|+|.|+
T Consensus         1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~-~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~   79 (299)
T cd02510           1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELK-LLLEEYYKKYLPKVKVLRLKKREGLIRARIAGA   79 (299)
T ss_pred             CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHH-HHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHH
Confidence            7999999997689999999999999875445999999999999988 5544 3333344799999999999999999999


Q ss_pred             hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCCCCCceeeeeccceeEeecCCHHH
Q psy8674         351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE  430 (439)
Q Consensus       351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~  430 (439)
                      +.|+|+||+|||+|+.++++||+.|++.+.+++..+++|.+..++..++.|....   ....|.+.|.+.+.|...+.+.
T Consensus        80 ~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  156 (299)
T cd02510          80 RAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSS---GDARGGFDWSLHFKWLPLPEEE  156 (299)
T ss_pred             HHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCC---CceeEEecccceeccccCCHHH
Confidence            9999999999999999999999999999999999999999999998888887432   2257889999999888776655

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>COG1216 Predicted glycosyltransferases [General function prediction only]

Probab=99.89  E-value=1.1e-22  Score=192.78  Aligned_cols=174  Identities=22%  Similarity=0.250  Sum_probs=121.1

Q ss_pred             HHHHHhc-CCcEEEEEecCCCChhHHHHhhhhhccCc---EEEEecCCcccCCCchHHHHHHHhcCCCeEee-eeeeccc
Q psy8674           7 EDYIERF-NGKVRLIRNTEREGLIRTRSRGAKESRGE---VIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGID   81 (439)
Q Consensus         7 ~~~~~~~-~~~i~~i~~~~n~G~a~arN~G~~~A~g~---~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~-~~~~~~~   81 (439)
                      .+.++.. .+++++|.+.+|.|+|+|.|+|++.|.++   |+++||+|+.+++++|+++++++++++..++. +.+...+
T Consensus        47 ~~~~~~~~~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~  126 (305)
T COG1216          47 LEALKARFFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYD  126 (305)
T ss_pred             HHHHHhhcCCcEEEEEcCCCccchhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCC
Confidence            3444443 35999999999999999999999999765   99999999999999999999999998776554 4443332


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN  161 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED  161 (439)
                      ........  +.   ....+.+...    ..+..... ...........++.|+||+++|++|+++|+|||+||+|. ||
T Consensus       127 ~~~~~~~~--~~---~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~-eD  195 (305)
T COG1216         127 ESLYIDRR--GG---ESDGLTGGWR----ASPLLEIA-PDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIYY-ED  195 (305)
T ss_pred             CCcchhee--cc---ccccccccce----eccccccc-ccccchhhhhhhcceeeeEEcHHHHHHhCCCCcccceee-hH
Confidence            22211111  00   0000111000    00000000 000000111115789999999999999999999999986 99


Q ss_pred             hHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674         162 FELSFKIWMCGGSIEWVPCSRIVSLIRPVF  191 (439)
Q Consensus       162 ~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~  191 (439)
                      +|||+|++++|+++.++|.+.++|......
T Consensus       196 ~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~  225 (305)
T COG1216         196 VDLCLRARKAGYKIYYVPDAIIYHKIGSSK  225 (305)
T ss_pred             HHHHHHHHHcCCeEEEeeccEEEEeccCCC
Confidence            999999999999999999999999865443

>PRK10073 putative glycosyl transferase; Provisional

Probab=99.87  E-value=2.3e-21  Score=184.97  Aligned_cols=116  Identities=25%  Similarity=0.361  Sum_probs=105.0

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHH
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR  346 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~  346 (439)
                      .+|.||||||+||++ +.|.+||+|+++|+++++  |||||||||+|+|.+ +++++.+..+ ++++++ .+|.|.+.|+
T Consensus         4 ~~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~~--EIIiVdDgStD~t~~-i~~~~~~~~~-~i~vi~-~~n~G~~~ar   77 (328)
T PRK10073          4 STPKLSIIIPLYNAG-KDFRAFMESLIAQTWTAL--EIIIVNDGSTDNSVE-IAKHYAENYP-HVRLLH-QANAGVSVAR   77 (328)
T ss_pred             CCCeEEEEEeccCCH-HHHHHHHHHHHhCCCCCe--EEEEEeCCCCccHHH-HHHHHHhhCC-CEEEEE-CCCCChHHHH
Confidence            357899999999999 999999999999999887  999999999999987 9999887765 799886 5699999999


Q ss_pred             HHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674         347 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV  388 (439)
Q Consensus       347 n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~  388 (439)
                      |.|++.|+|+||+|+|+|+.+.|++++.+++.+..++..+++
T Consensus        78 N~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~  119 (328)
T PRK10073         78 NTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ  119 (328)
T ss_pred             HHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence            999999999999999999999999999999998876654444

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=99.85  E-value=4.3e-21  Score=180.24  Aligned_cols=163  Identities=18%  Similarity=0.184  Sum_probs=115.0

Q ss_pred             HHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhc---cCcEEEEecCCcccCCCchHHHHHHHhcCC-Ce-Eeeeeeec
Q psy8674           5 KLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKES---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KI-MTVPVIDG   79 (439)
Q Consensus         5 ~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A---~g~~i~flD~D~~~~~~~l~~l~~~~~~~~-~~-~v~~~~~~   79 (439)
                      .+++.+++++ +|+++++++|.|+|+|+|.|++.|   .+|||+|||+|+.+++++|+.+++.+++++ .. +++|.+  
T Consensus        36 ~~~~~~~~~~-~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--  112 (281)
T TIGR01556        36 PLKNARLRGQ-KIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRF--  112 (281)
T ss_pred             hHHHHhccCC-CeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeE--
Confidence            4556666665 899999999999999999999998   689999999999999999999999998754 33 444432  


Q ss_pred             ccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccc
Q psy8674          80 IDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGG  159 (439)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~  159 (439)
                      ++.......+    .....+ +.+    .  ...      ........+.....++++++||++|+++|+|||.||+++ 
T Consensus       113 ~~~~~~~~~~----~~~~~~-~~~----~--~~~------~~~~~~~~~~~~~~~sg~li~~~~~~~iG~fde~~fi~~-  174 (281)
T TIGR01556       113 FDRGTSRRLP----AIHLDG-LLL----R--QIS------LDGLTTPQKTSFLISSGCLITREVYQRLGMMDEELFIDH-  174 (281)
T ss_pred             EcCCCcccCC----ceeecc-cce----e--eec------ccccCCceeccEEEcCcceeeHHHHHHhCCccHhhcccc-
Confidence            1111100000    000000 000    0  000      000112223334444556899999999999999999875 


Q ss_pred             hhhHHHHHHHHhCCcEEEecccceecccc
Q psy8674         160 ENFELSFKIWMCGGSIEWVPCSRIVSLIR  188 (439)
Q Consensus       160 ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~  188 (439)
                      ||+|||+|++++|+++.++|++.++|...
T Consensus       175 ~D~e~~~R~~~~G~~i~~~~~~~~~H~~g  203 (281)
T TIGR01556       175 VDTEWSLRAQNYGIPLYIDPDIVLEHRIG  203 (281)
T ss_pred             hHHHHHHHHHHCCCEEEEeCCEEEEEecC
Confidence            99999999999999999999999999754

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]

Probab=99.85  E-value=5.3e-21  Score=178.98  Aligned_cols=166  Identities=23%  Similarity=0.379  Sum_probs=115.3

Q ss_pred             HHHHHHHHhcCCcEEEEEecCC---CChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHH---HHhcCCCe-Eeeee
Q psy8674           4 KKLEDYIERFNGKVRLIRNTER---EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA---PIYSDRKI-MTVPV   76 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~~~n---~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~---~~~~~~~~-~v~~~   76 (439)
                      +.+.++.++.. .+++|..+.+   .|.|.|||+|++.|+|++|+|+|+|++++|++++.++.   .+..++.. ++.|.
T Consensus        50 ~~l~~~~~~~~-~~~~i~~~~~~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~  128 (281)
T PF10111_consen   50 EELKKLCEKNG-FIRYIRHEDNGEPFSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPC  128 (281)
T ss_pred             HHHHHHHhccC-ceEEEEcCCCCCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            56777777765 4557766644   59999999999999999999999999999999999999   67665544 44443


Q ss_pred             eecccCCC-cccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCC
Q psy8674          77 IDGIDYQT-WEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLL  155 (439)
Q Consensus        77 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~  155 (439)
                      . ..+... ......        ....+..     ......   ..............|+|++++|+.|.++|||||+|.
T Consensus       129 ~-yl~~~~~~~~~~~--------~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~  191 (281)
T PF10111_consen  129 L-YLSEEGSEKFYSQ--------FKNLWDH-----EFLESF---ISGKNSLWEFIAFASSCFLINREDFLEIGGFDERFR  191 (281)
T ss_pred             e-eccchhhHHHhhc--------chhcchH-----HHHHHH---hhccccccccccccceEEEEEHHHHHHhCCCCcccc
Confidence            2 221111 100000        0000000     000000   001112222234467999999999999999999999


Q ss_pred             CccchhhHHHHHHHHhCCcEEEecccceeccc
Q psy8674         156 VWGGENFELSFKIWMCGGSIEWVPCSRIVSLI  187 (439)
Q Consensus       156 ~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~  187 (439)
                      .||+||.||++||.+.|+.+...|+..++|..
T Consensus       192 G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~~~  223 (281)
T PF10111_consen  192 GWGYEDIDFGYRLKKAGYKFKRSPDYLVYHSH  223 (281)
T ss_pred             CCCcchHHHHHHHHHcCCcEecChHHhccccc
Confidence            99999999999999999999999999998864

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=99.83  E-value=5.8e-20  Score=163.07  Aligned_cols=118  Identities=18%  Similarity=0.341  Sum_probs=102.3

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCC-cEEEEEcCCCCC---HHH
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREG---LIR  344 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~v~~i~~~~~~g---~~~  344 (439)
                      |.||||||+||++ ..|.+||+|+.+|+++++  |||||||+|+|+|.+ +++++.+.++. +++++....+.|   ++.
T Consensus         1 p~vsviip~~n~~-~~l~~~L~sl~~q~~~~~--eiivVdd~s~d~t~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   76 (196)
T cd02520           1 PGVSILKPLCGVD-PNLYENLESFFQQDYPKY--EILFCVQDEDDPAIP-VVRKLIAKYPNVDARLLIGGEKVGINPKVN   76 (196)
T ss_pred             CCeEEEEecCCCC-ccHHHHHHHHHhccCCCe--EEEEEeCCCcchHHH-HHHHHHHHCCCCcEEEEecCCcCCCCHhHH
Confidence            5799999999999 999999999999999886  999999999999987 88888877652 466776666644   456


Q ss_pred             HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674         345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                      ++|.|++.++|||++|+|+|+.++|+||+.+++.+.++..++|++.
T Consensus        77 ~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~  122 (196)
T cd02520          77 NLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL  122 (196)
T ss_pred             HHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee
Confidence            7889999999999999999999999999999999877667777765

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=99.83  E-value=5.4e-20  Score=168.79  Aligned_cols=124  Identities=12%  Similarity=0.067  Sum_probs=102.2

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHH
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR  348 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~  348 (439)
                      |.+|||||+||++ +.|.++|+|+.+|+++...+|||||||+|+|+|.+ +++++......++.++....+.|++.|+|.
T Consensus         1 p~vsIiIp~~Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~-i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~   78 (241)
T cd06427           1 PVYTILVPLYKEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIA-AARALRLPSIFRVVVVPPSQPRTKPKACNY   78 (241)
T ss_pred             CeEEEEEecCCcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHH-HHHHhccCCCeeEEEecCCCCCchHHHHHH
Confidence            6799999999999 99999999999999986445999999999999987 887764321224555555677899999999


Q ss_pred             HHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcC-CC-EEEEeeeeee
Q psy8674         349 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD-RK-IMTVPVIDGI  394 (439)
Q Consensus       349 g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~-~~-~~v~~~~~~~  394 (439)
                      |++.++||||+|+|+|+.++++||.++++.+.+. +. +++++.+...
T Consensus        79 g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  126 (241)
T cd06427          79 ALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYY  126 (241)
T ss_pred             HHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEee
Confidence            9999999999999999999999999999999754 33 4444544333

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=99.83  E-value=5.3e-20  Score=158.27  Aligned_cols=123  Identities=33%  Similarity=0.509  Sum_probs=103.9

Q ss_pred             EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHh
Q psy8674         272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK  351 (439)
Q Consensus       272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~  351 (439)
                      |||||+||+. +.|.+||+|+++|+...+  |||||||||+|++.+ +++++.+ .+.+++++..+++.|.+.++|.|++
T Consensus         1 Svvip~~n~~-~~l~~~l~sl~~q~~~~~--eiivvdd~s~d~~~~-~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~   75 (169)
T PF00535_consen    1 SVVIPTYNEA-EYLERTLESLLKQTDPDF--EIIVVDDGSTDETEE-ILEEYAE-SDPNIRYIRNPENLGFSAARNRGIK   75 (169)
T ss_dssp             EEEEEESS-T-TTHHHHHHHHHHHSGCEE--EEEEEECS-SSSHHH-HHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHH
T ss_pred             CEEEEeeCCH-HHHHHHHHHHhhccCCCE--EEEEecccccccccc-ccccccc-ccccccccccccccccccccccccc
Confidence            8999999998 999999999999976666  999999999999877 8888876 3458999999999999999999999


Q ss_pred             hcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCc
Q psy8674         352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTW  399 (439)
Q Consensus       352 ~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~  399 (439)
                      .|+++|++++|+|+.+.++||+.+++.+.+++..++++.....+.+..
T Consensus        76 ~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  123 (169)
T PF00535_consen   76 HAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNR  123 (169)
T ss_dssp             H--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTE
T ss_pred             ccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCcc
Confidence            999999999999999999999999999999888777666555555543

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>PRK10018 putative glycosyl transferase; Provisional

Probab=99.82  E-value=1.5e-19  Score=167.83  Aligned_cols=110  Identities=25%  Similarity=0.372  Sum_probs=98.3

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc-CCcEEEEEcCCCCCHHHH
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF-NGKVRLIRNTEREGLIRT  345 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~v~~i~~~~~~g~~~a  345 (439)
                      ..|.||||||+||++ +.|.+||+|+++|+++++  |||||||||++  .+ .++++.+.+ +.+++++..+.|.|.+.|
T Consensus         3 ~~p~VSVIip~yN~~-~~l~~~l~Svl~Qt~~~~--EiIVVDDgS~~--~~-~~~~~~~~~~~~ri~~i~~~~n~G~~~a   76 (279)
T PRK10018          3 DNPLISIYMPTWNRQ-QLAIRAIKSVLRQDYSNW--EMIIVDDCSTS--WE-QLQQYVTALNDPRITYIHNDINSGACAV   76 (279)
T ss_pred             CCCEEEEEEEeCCCH-HHHHHHHHHHHhCCCCCe--EEEEEECCCCC--HH-HHHHHHHHcCCCCEEEEECCCCCCHHHH
Confidence            468899999999999 999999999999999987  99999999985  23 566666543 347999999999999999


Q ss_pred             HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcC
Q psy8674         346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD  382 (439)
Q Consensus       346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~  382 (439)
                      +|.|++.|+|+||+|+|+|+.+.|++|+.+++.+...
T Consensus        77 ~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~  113 (279)
T PRK10018         77 RNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQL  113 (279)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhC
Confidence            9999999999999999999999999999999988763

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=99.82  E-value=1.3e-19  Score=165.24  Aligned_cols=125  Identities=18%  Similarity=0.229  Sum_probs=103.1

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc---CCcEEEEEcCCCCC-HHH
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF---NGKVRLIRNTEREG-LIR  344 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---~~~v~~i~~~~~~g-~~~  344 (439)
                      |+||||||+||++ +.|.+||+|+.+|+++...+||||||| |+|+|.+ +++++...+   ..+++++...++.| ++.
T Consensus         1 p~vSViIp~yNe~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~-~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~   77 (232)
T cd06437           1 PMVTVQLPVFNEK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVR-LAREIVEEYAAQGVNIKHVRRADRTGYKAG   77 (232)
T ss_pred             CceEEEEecCCcH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHH-HHHHHHHHHhhcCCceEEEECCCCCCCchH
Confidence            5799999999999 999999999999999864569999998 8899887 777665432   23577776666667 588


Q ss_pred             HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecC
Q psy8674         345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY  396 (439)
Q Consensus       345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~  396 (439)
                      ++|.|++.++|+||+|+|+|+.++|+||+.+...+.++..+++.+.+...+.
T Consensus        78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~  129 (232)
T cd06437          78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINA  129 (232)
T ss_pred             HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcC
Confidence            9999999999999999999999999999998887766666677776544443

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=99.82  E-value=2e-19  Score=160.32  Aligned_cols=123  Identities=18%  Similarity=0.279  Sum_probs=105.7

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHH
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR  348 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~  348 (439)
                      |++|||||+||++++.|.+||+|+++|+++++  |||||||||+|++.+++++.+....+ +++++..+.+.|.+.++|.
T Consensus         1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~--eiivvd~gs~d~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~a~n~   77 (202)
T cd04184           1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNW--ELCIADDASTDPEVKRVLKKYAAQDP-RIKVVFREENGGISAATNS   77 (202)
T ss_pred             CeEEEEEecccCcHHHHHHHHHHHHhCcCCCe--EEEEEeCCCCChHHHHHHHHHHhcCC-CEEEEEcccCCCHHHHHHH
Confidence            57999999999976889999999999998877  99999999999887767777665544 7888889999999999999


Q ss_pred             HHhhcCCCEEEEEcCCCccCCCChHHHHHhhh-cCCCEEEEeeeeee
Q psy8674         349 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY-SDRKIMTVPVIDGI  394 (439)
Q Consensus       349 g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~  394 (439)
                      |++.++++|++|+|+|+.++++|++.+++.+. .+...++.+.....
T Consensus        78 g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~  124 (202)
T cd04184          78 ALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKI  124 (202)
T ss_pred             HHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhc
Confidence            99999999999999999999999999999994 45555655544333

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=99.82  E-value=2.2e-19  Score=159.99  Aligned_cols=123  Identities=18%  Similarity=0.182  Sum_probs=104.2

Q ss_pred             EEEEEecCCC-hhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         272 SVILVFHNEG-FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       272 siiip~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      |||||+||++ .+.|.+||+|+++|+++++  |||||||||++++..++++++.++.+  ++++..++|.|.+.|+|.|+
T Consensus         1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~--eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~   76 (201)
T cd04195           1 SVLMSVYIKEKPEFLREALESILKQTLPPD--EVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGL   76 (201)
T ss_pred             CEEEEccccchHHHHHHHHHHHHhcCCCCc--EEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHH
Confidence            7999999986 2489999999999999876  99999999844444448888877653  88898899999999999999


Q ss_pred             hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCC-CEEEEeeeeeecCCC
Q psy8674         351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQT  398 (439)
Q Consensus       351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~~  398 (439)
                      +.++|+|++|+|+|+.++|++|+.+++.+++++ ..++++....++.+.
T Consensus        77 ~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (201)
T cd04195          77 KHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDG  125 (201)
T ss_pred             HhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCC
Confidence            999999999999999999999999999997655 466666666655544

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=99.82  E-value=2.8e-19  Score=177.63  Aligned_cols=123  Identities=18%  Similarity=0.242  Sum_probs=108.4

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT  345 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a  345 (439)
                      ...|++|||||+||++ +.|.+||+|+.+|+++....|||||||||+|+|.+ +++++.+.++ +++++..+++.|++.|
T Consensus        46 ~~~P~vsVIIP~yNe~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~-il~~~~~~~~-~v~v~~~~~~~Gka~A  122 (439)
T TIGR03111        46 GKLPDITIIIPVYNSE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQ-VFCRAQNEFP-GLSLRYMNSDQGKAKA  122 (439)
T ss_pred             CCCCCEEEEEEeCCCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHH-HHHHHHHhCC-CeEEEEeCCCCCHHHH
Confidence            4578999999999999 99999999999999997556999999999999977 8888877765 6777767788999999


Q ss_pred             HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeee
Q psy8674         346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVI  391 (439)
Q Consensus       346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~  391 (439)
                      +|.|++.+++||++++|+|+.+++++++++++.+.+++. +++++.+
T Consensus       123 lN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~  169 (439)
T TIGR03111       123 LNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVI  169 (439)
T ss_pred             HHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEE
Confidence            999999999999999999999999999999999986665 4444544

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=99.81  E-value=1.9e-19  Score=160.45  Aligned_cols=151  Identities=17%  Similarity=0.266  Sum_probs=106.5

Q ss_pred             HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCC-CeEeeeeeecccC
Q psy8674           4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDY   82 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~   82 (439)
                      +.++.+.++.+ +++++.+++|.|++.|+|.|++.|+|+||+|+|+|+.++|+||+.+++.+..++ ..++.+.......
T Consensus        48 ~~~~~~~~~~~-~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~  126 (202)
T cd04184          48 RVLKKYAAQDP-RIKVVFREENGGISAATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDE  126 (202)
T ss_pred             HHHHHHHhcCC-CEEEEEcccCCCHHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccC
Confidence            34555555554 899999999999999999999999999999999999999999999999995444 3444332211111


Q ss_pred             CCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhh
Q psy8674          83 QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENF  162 (439)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~  162 (439)
                      ......          ..+  .  .   ......          .......++++++||++|+++||||+.+.  ++||+
T Consensus       127 ~~~~~~----------~~~--~--~---~~~~~~----------~~~~~~~~~~~~~~r~~~~~iggf~~~~~--~~eD~  177 (202)
T cd04184         127 GGKRSE----------PFF--K--P---DWSPDL----------LLSQNYIGHLLVYRRSLVRQVGGFREGFE--GAQDY  177 (202)
T ss_pred             CCCEec----------ccc--C--C---CCCHHH----------hhhcCCccceEeEEHHHHHHhCCCCcCcc--cchhH
Confidence            110000          000  0  0   000000          01112346678999999999999999874  46999


Q ss_pred             HHHHHHHHhCCcEEEeccccee
Q psy8674         163 ELSFKIWMCGGSIEWVPCSRIV  184 (439)
Q Consensus       163 Dl~~Rl~~~G~~i~~~p~~~v~  184 (439)
                      ||++|+.++|+++.+.|++.+.
T Consensus       178 ~l~~rl~~~g~~~~~~~~~~~~  199 (202)
T cd04184         178 DLVLRVSEHTDRIAHIPRVLYH  199 (202)
T ss_pred             HHHHHHHhccceEEEccHhhhh
Confidence            9999999999999999986443

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.81  E-value=2.5e-19  Score=161.07  Aligned_cols=120  Identities=23%  Similarity=0.300  Sum_probs=105.0

Q ss_pred             EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHh
Q psy8674         272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK  351 (439)
Q Consensus       272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~  351 (439)
                      |||||+||+. +.|.+||+|+++|+++++  |||||||||+|+|.+ +++++..+++..+.++..+.+.|.+.++|.|+.
T Consensus         1 sIvIp~yn~~-~~l~~~l~sl~~q~~~~~--eiiVvddgS~d~t~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~   76 (214)
T cd04196           1 AVLMATYNGE-KYLREQLDSILAQTYKND--ELIISDDGSTDGTVE-IIKEYIDKDPFIIILIRNGKNLGVARNFESLLQ   76 (214)
T ss_pred             CEEEEecCcH-HHHHHHHHHHHhCcCCCe--EEEEEeCCCCCCcHH-HHHHHHhcCCceEEEEeCCCCccHHHHHHHHHH
Confidence            6999999999 999999999999998876  999999999999877 899988876556788888999999999999999


Q ss_pred             hcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeeec
Q psy8674         352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGID  395 (439)
Q Consensus       352 ~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~  395 (439)
                      .++|+|++|+|+|+.+.|++|..+++.+..++. .++++.....+
T Consensus        77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  121 (214)
T cd04196          77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVD  121 (214)
T ss_pred             hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEEC
Confidence            999999999999999999999999999655444 55555444333

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=99.81  E-value=3.4e-19  Score=164.53  Aligned_cols=127  Identities=22%  Similarity=0.255  Sum_probs=112.6

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT  345 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a  345 (439)
                      ..+|++|||||+||++ +.|.+||+|+.+|+++...+|||||||+|+|.|.+ +++++.+.   +++++..+++.|++.+
T Consensus        26 ~~~~~isVvip~~n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~-~~~~~~~~---~v~~i~~~~~~g~~~a  100 (251)
T cd06439          26 AYLPTVTIIIPAYNEE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAE-IAREYADK---GVKLLRFPERRGKAAA  100 (251)
T ss_pred             CCCCEEEEEEecCCcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHH-HHHHHhhC---cEEEEEcCCCCChHHH
Confidence            5678899999999999 99999999999999876335999999999999877 88877554   5888888999999999


Q ss_pred             HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCC
Q psy8674         346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQ  397 (439)
Q Consensus       346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~  397 (439)
                      +|.|++.+++||++|+|+|+.++++|++++++.+.++...++++.+...+.+
T Consensus       101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~  152 (251)
T cd06439         101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGG  152 (251)
T ss_pred             HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCc
Confidence            9999999999999999999999999999999999877778888777665554

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=99.81  E-value=3.3e-19  Score=174.28  Aligned_cols=123  Identities=18%  Similarity=0.269  Sum_probs=105.8

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC--CcEEEEEcCC----C
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN--GKVRLIRNTE----R  339 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~v~~i~~~~----~  339 (439)
                      ...|+||||||+||++ +.|.+||+|+.+|+++. .+|||||||+|+|+|.+ +++++.++++  .++++++.+.    .
T Consensus        37 ~~~p~VSVIIpa~Ne~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~-i~~~~~~~~~~~~~i~vi~~~~~~~g~  113 (384)
T TIGR03469        37 EAWPAVVAVVPARNEA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTAD-IARAAARAYGRGDRLTVVSGQPLPPGW  113 (384)
T ss_pred             CCCCCEEEEEecCCcH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHH-HHHHHHHhcCCCCcEEEecCCCCCCCC
Confidence            4678999999999999 99999999999999984 24999999999999987 8898877654  2688886432    2


Q ss_pred             CCHHHHHHHHHhhcC-----CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674         340 EGLIRTRSRGAKESR-----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       340 ~g~~~a~n~g~~~a~-----~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~  391 (439)
                      .|++.|+|.|++.|+     +|+++|+|+|+.++|+|++++++.+++++..++++..
T Consensus       114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~  170 (384)
T TIGR03469       114 SGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMV  170 (384)
T ss_pred             cchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecc
Confidence            588899999999999     9999999999999999999999999887766665443

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=99.81  E-value=1.7e-19  Score=164.98  Aligned_cols=155  Identities=15%  Similarity=0.101  Sum_probs=109.3

Q ss_pred             CcEEEEEecCCCChhHHHHhhhhhccC---cEEEEecCCcccCCCchHHHH---HHHhcCCCeEee-eeeecccCCCccc
Q psy8674          15 GKVRLIRNTEREGLIRTRSRGAKESRG---EVIVFLDAHCEVGLNWLPPLL---APIYSDRKIMTV-PVIDGIDYQTWEF   87 (439)
Q Consensus        15 ~~i~~i~~~~n~G~a~arN~G~~~A~g---~~i~flD~D~~~~~~~l~~l~---~~~~~~~~~~v~-~~~~~~~~~~~~~   87 (439)
                      ++++++..++|.|+++|+|.|++.|+|   +||+|+|+|+.++|+||+.++   ..+..++...+. +............
T Consensus        47 ~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (237)
T cd02526          47 EKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSP  126 (237)
T ss_pred             CcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeecc
Confidence            479999999999999999999999998   999999999999999999995   555555544333 3222111110000


Q ss_pred             ccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHH
Q psy8674          88 RSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFK  167 (439)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~R  167 (439)
                      .         .....+.. ..          ...............++++++||++|+++||||+.+++ ++||+||++|
T Consensus       127 ~---------~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~-~~eD~d~~~r  185 (237)
T cd02526         127 G---------VRKSGYKL-RI----------QKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDLFI-DYVDTEWCLR  185 (237)
T ss_pred             c---------eeccCccc-ee----------cccccCCceEeeeeeccceEEcHHHHHHhCCCCHHHcC-ccchHHHHHH
Confidence            0         00000000 00          00001112233455677899999999999999999975 4599999999


Q ss_pred             HHHhCCcEEEecccceecccccc
Q psy8674         168 IWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       168 l~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      +.++|+++.++|.+.++|.....
T Consensus       186 ~~~~G~~~~~~~~~~v~h~~~~~  208 (237)
T cd02526         186 ARSKGYKIYVVPDAVLKHELGDK  208 (237)
T ss_pred             HHHcCCcEEEEcCeEEEecccCc
Confidence            99999999999999999986544

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=99.80  E-value=4.3e-19  Score=162.98  Aligned_cols=121  Identities=22%  Similarity=0.269  Sum_probs=104.8

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHHhcC--CcCCcceEEEEeCCCChhhHHHHHHHHHHHcC-CcEEEEEcCCCCCHH
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSIIKRT--PAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIRNTEREGLI  343 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~--~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~v~~i~~~~~~g~~  343 (439)
                      .+|+||||||+||++ +.|..+++++.++.  +.++  |||||||||+|+|.+ +++++.+.++ ..+.++..++|.|++
T Consensus         7 ~~~~vsVvIp~yne~-~~l~~~l~~l~~~~~~~~~~--eiivvDdgS~D~t~~-i~~~~~~~~~~~~v~~~~~~~n~G~~   82 (243)
T PLN02726          7 GAMKYSIIVPTYNER-LNIALIVYLIFKALQDVKDF--EIIVVDDGSPDGTQD-VVKQLQKVYGEDRILLRPRPGKLGLG   82 (243)
T ss_pred             CCceEEEEEccCCch-hhHHHHHHHHHHHhccCCCe--EEEEEeCCCCCCHHH-HHHHHHHhcCCCcEEEEecCCCCCHH
Confidence            467899999999999 99999999887643  3344  999999999999987 8888877654 368888888999999


Q ss_pred             HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674         344 RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       344 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~  391 (439)
                      .|+|.|++.|+|+|++++|+|+.++|++|+.+++.+.+++..+|++..
T Consensus        83 ~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r  130 (243)
T PLN02726         83 TAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTR  130 (243)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEcc
Confidence            999999999999999999999999999999999999877766666543

>PRK11204 N-glycosyltransferase; Provisional

Probab=99.80  E-value=6.8e-19  Score=174.91  Aligned_cols=123  Identities=19%  Similarity=0.273  Sum_probs=109.2

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT  345 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a  345 (439)
                      ...|.+|||||+||++ +.+.+|++|+.+|+++++  |||||||||+|+|.+ .++++.++++ ++++++.++|.|++.|
T Consensus        51 ~~~p~vsViIp~yne~-~~i~~~l~sl~~q~yp~~--eiiVvdD~s~d~t~~-~l~~~~~~~~-~v~~i~~~~n~Gka~a  125 (420)
T PRK11204         51 KEYPGVSILVPCYNEG-ENVEETISHLLALRYPNY--EVIAINDGSSDNTGE-ILDRLAAQIP-RLRVIHLAENQGKANA  125 (420)
T ss_pred             CCCCCEEEEEecCCCH-HHHHHHHHHHHhCCCCCe--EEEEEECCCCccHHH-HHHHHHHhCC-cEEEEEcCCCCCHHHH
Confidence            3568999999999999 999999999999999977  999999999999877 8888887765 7999988899999999


Q ss_pred             HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeee
Q psy8674         346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDG  393 (439)
Q Consensus       346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~  393 (439)
                      +|.|++.+++|+++++|+|+.++|++|+.+++.+++++. ++|++....
T Consensus       126 ln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~  174 (420)
T PRK11204        126 LNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRI  174 (420)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCcee
Confidence            999999999999999999999999999999999976555 555544433

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=99.80  E-value=2.5e-19  Score=159.61  Aligned_cols=156  Identities=13%  Similarity=0.122  Sum_probs=111.7

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC-eEeeeeeecc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGI   80 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~   80 (439)
                      +.+.+++|.++++  ++++.+++|.|+++|+|.|++.|+|+||+|+|+|++++|++|+.+++.+++++. .++++....+
T Consensus        44 t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  121 (201)
T cd04195          44 LNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEF  121 (201)
T ss_pred             HHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEE
Confidence            4556777777765  999999999999999999999999999999999999999999999999987654 4554444333


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      ..........          .      .  ............     ....+.++++++||++|+++|||++..   ++|
T Consensus       122 ~~~~~~~~~~----------~------~--~~~~~~~~~~~~-----~~~~~~~~~~~~rr~~~~~~g~~~~~~---~~e  175 (201)
T cd04195         122 DSDGNDIGKR----------R------L--PTSHDDILKFAR-----RRSPFNHPTVMFRKSKVLAVGGYQDLP---LVE  175 (201)
T ss_pred             CCCCCeeccc----------c------C--CCCHHHHHHHhc-----cCCCCCChHHhhhHHHHHHcCCcCCCC---Cch
Confidence            2222111000          0      0  000000000000     011234557899999999999999872   459


Q ss_pred             hhHHHHHHHHhCCcEEEecccceec
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVS  185 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H  185 (439)
                      |++|++|+..+|+++.++|+..++|
T Consensus       176 D~~~~~r~~~~g~~~~~~~~~~~~y  200 (201)
T cd04195         176 DYALWARMLANGARFANLPEILVKA  200 (201)
T ss_pred             HHHHHHHHHHcCCceecccHHHhhc
Confidence            9999999999999999999988765

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=99.80  E-value=2.7e-19  Score=162.71  Aligned_cols=169  Identities=21%  Similarity=0.340  Sum_probs=99.9

Q ss_pred             hhHHHHHHHHhcC-CcEEEEEecCCCC---hhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674           2 LDKKLEDYIERFN-GKVRLIRNTEREG---LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI   77 (439)
Q Consensus         2 ~~~~l~~~~~~~~-~~i~~i~~~~n~G---~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~   77 (439)
                      +.+.++++.++++ .+++++..+.|.|   .+.|+|.|++.+++++|+|+|+|++++|+||+.+++.++.....++++..
T Consensus        44 ~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~  123 (228)
T PF13641_consen   44 TAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPV  123 (228)
T ss_dssp             GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEE
T ss_pred             HHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeE
Confidence            3456778888887 3579998877666   68899999999999999999999999999999999999555556666554


Q ss_pred             ecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674          78 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW  157 (439)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~  157 (439)
                      ........ ..          ....+.........        ...........+.|+++++||++|+++||||+  +..
T Consensus       124 ~~~~~~~~-~~----------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~--~~~  182 (228)
T PF13641_consen  124 FPDNDRNW-LT----------RLQDLFFARWHLRF--------RSGRRALGVAFLSGSGMLFRRSALEEVGGFDP--FIL  182 (228)
T ss_dssp             EETTCCCE-EE----------E-TT--S-EETTTS---------TT-B----S-B--TEEEEEHHHHHHH-S--S--SSS
T ss_pred             eecCCCCH-HH----------HHHHHHHhhhhhhh--------hhhhcccceeeccCcEEEEEHHHHHHhCCCCC--CCc
Confidence            33221111 00          00000000000000        00111223445679999999999999999999  333


Q ss_pred             cchhhHHHHHHHHhCCcEEEecccceecccccccc
Q psy8674         158 GGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFK  192 (439)
Q Consensus       158 ~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~~  192 (439)
                       +||.||++|++++|+++.+.|++.++|.....++
T Consensus       183 -~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~~~~~  216 (228)
T PF13641_consen  183 -GEDFDLCLRLRAAGWRIVYAPDALVYHEEPSSLK  216 (228)
T ss_dssp             -SHHHHHHHHHHHTT--EEEEEEEEEEE--SSSTH
T ss_pred             -ccHHHHHHHHHHCCCcEEEECCcEEEEeCCCCHH
Confidence             4999999999999999999999999999665443

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=99.80  E-value=7.5e-19  Score=175.12  Aligned_cols=126  Identities=22%  Similarity=0.290  Sum_probs=110.0

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHH
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR  346 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~  346 (439)
                      ..|.+|||||+|||+ ..+.+||+|+++|+|+++  |||||||||+|+|.+ .++++.++++ ++++++.++|.|++.|+
T Consensus        73 ~~p~vsViIP~yNE~-~~i~~~l~sll~q~yp~~--eIivVdDgs~D~t~~-~~~~~~~~~~-~v~vv~~~~n~Gka~Al  147 (444)
T PRK14583         73 GHPLVSILVPCFNEG-LNARETIHAALAQTYTNI--EVIAINDGSSDDTAQ-VLDALLAEDP-RLRVIHLAHNQGKAIAL  147 (444)
T ss_pred             CCCcEEEEEEeCCCH-HHHHHHHHHHHcCCCCCe--EEEEEECCCCccHHH-HHHHHHHhCC-CEEEEEeCCCCCHHHHH
Confidence            458899999999999 999999999999999976  999999999999877 8888877765 79999888999999999


Q ss_pred             HHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeeecCC
Q psy8674         347 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGIDYQ  397 (439)
Q Consensus       347 n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~  397 (439)
                      |.|++.+++|+++++|+|+.++++++..+++.+.+++. +++++.....+.+
T Consensus       148 N~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~  199 (444)
T PRK14583        148 RMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRS  199 (444)
T ss_pred             HHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCC
Confidence            99999999999999999999999999999999976655 5555444443333

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=99.80  E-value=5.9e-19  Score=161.35  Aligned_cols=165  Identities=17%  Similarity=0.180  Sum_probs=112.7

Q ss_pred             HHHHHHHHhcCCcEEEEEecCCCCh-hHHHHhhhhhcc--CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674           4 KKLEDYIERFNGKVRLIRNTEREGL-IRTRSRGAKESR--GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI   80 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~~~n~G~-a~arN~G~~~A~--g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~   80 (439)
                      +.++++.++++++++++...+|.|. ++|+|.|++.|+  +|||+|+|+|++++|+||..++..+++...+++.+.....
T Consensus        45 ~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~  124 (236)
T cd06435          45 KPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYR  124 (236)
T ss_pred             HHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCcccc
Confidence            4567777776668999998888886 899999999986  6999999999999999999999999743334443321111


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      ....          ........|.    +    ....................|+++++||++|+++||||+.+.   +|
T Consensus       125 ~~~~----------~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~~~~~---~e  183 (236)
T cd06435         125 DGEE----------SLFKRMCYAE----Y----KGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWDEWCI---TE  183 (236)
T ss_pred             CCCc----------cHHHHHHhHH----H----HHHHHHHhccccccCceEEecceEEEEHHHHHHhCCCCCccc---cc
Confidence            1100          0000000010    0    000000000001112334578899999999999999999863   49


Q ss_pred             hhHHHHHHHHhCCcEEEecccceeccccc
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSLIRP  189 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~  189 (439)
                      |+||++|+++.|+++.+.|++.++|....
T Consensus       184 D~dl~~r~~~~G~~~~~~~~~~~~~~~~~  212 (236)
T cd06435         184 DSELGLRMHEAGYIGVYVAQSYGHGLIPD  212 (236)
T ss_pred             hHHHHHHHHHCCcEEEEcchhhccCcCcc
Confidence            99999999999999999999887765433

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=99.79  E-value=1e-18  Score=170.26  Aligned_cols=122  Identities=16%  Similarity=0.287  Sum_probs=104.5

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCC-cEEEEEcCCCCC---H
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREG---L  342 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~v~~i~~~~~~g---~  342 (439)
                      ..|.||||||+||++ +.|.+||+|+.+|+|+++  ||||+||+|+|.|.+ +++++.++++. +++++..+++.|   +
T Consensus        39 ~~p~VSViiP~~nee-~~l~~~L~Sl~~q~Yp~~--EIivvdd~s~D~t~~-iv~~~~~~~p~~~i~~v~~~~~~G~~~K  114 (373)
T TIGR03472        39 AWPPVSVLKPLHGDE-PELYENLASFCRQDYPGF--QMLFGVQDPDDPALA-VVRRLRADFPDADIDLVIDARRHGPNRK  114 (373)
T ss_pred             CCCCeEEEEECCCCC-hhHHHHHHHHHhcCCCCe--EEEEEeCCCCCcHHH-HHHHHHHhCCCCceEEEECCCCCCCChH
Confidence            468899999999999 999999999999999987  999999999999877 99998887763 477777666555   5


Q ss_pred             HHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674         343 IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID  392 (439)
Q Consensus       343 ~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~  392 (439)
                      ..+.+.+++.|++|+++|+|+|+.++|+||++++..+++++.++|++...
T Consensus       115 ~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~  164 (373)
T TIGR03472       115 VSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYR  164 (373)
T ss_pred             HHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEecccc
Confidence            55666688999999999999999999999999999998767666665443

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=99.79  E-value=4.6e-19  Score=157.32  Aligned_cols=135  Identities=19%  Similarity=0.302  Sum_probs=106.8

Q ss_pred             hhHHHHHHHHhcC-CcEEEEEecCCCCh---hHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674           2 LDKKLEDYIERFN-GKVRLIRNTEREGL---IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI   77 (439)
Q Consensus         2 ~~~~l~~~~~~~~-~~i~~i~~~~n~G~---a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~   77 (439)
                      +.+.++++.++++ .+++++.++.|.|.   +.+.|.|++.|+|||++|+|+|+.++|+||+.+++.+......++++. 
T Consensus        44 t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~-  122 (196)
T cd02520          44 AIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL-  122 (196)
T ss_pred             HHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee-
Confidence            4567788888876 35778887777665   346789999999999999999999999999999999864444444221 


Q ss_pred             ecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674          78 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW  157 (439)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~  157 (439)
                                                                           ...|+++++||++|+++|||++-... 
T Consensus       123 -----------------------------------------------------~~~g~~~~~r~~~~~~~ggf~~~~~~-  148 (196)
T cd02520         123 -----------------------------------------------------CAFGKSMALRREVLDAIGGFEAFADY-  148 (196)
T ss_pred             -----------------------------------------------------cccCceeeeEHHHHHhccChHHHhHH-
Confidence                                                                 23578999999999999999864333 


Q ss_pred             cchhhHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674         158 GGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVF  191 (439)
Q Consensus       158 ~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~  191 (439)
                      .+||+||++|+.++|+++.+.|.+.++|.....+
T Consensus       149 ~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~~~~~  182 (196)
T cd02520         149 LAEDYFLGKLIWRLGYRVVLSPYVVMQPLGSTSL  182 (196)
T ss_pred             HHHHHHHHHHHHHcCCeEEEcchheeccCCcccH
Confidence            3599999999999999999999987777654443

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

Probab=99.79  E-value=1.1e-18  Score=157.76  Aligned_cols=119  Identities=15%  Similarity=0.218  Sum_probs=100.3

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC-CcEEEEE----cCCCCCHHHHHH
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIR----NTEREGLIRTRS  347 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~v~~i~----~~~~~g~~~a~n  347 (439)
                      ||||+||++ +.|.+||+||.+|++++ .+|||||||||+|+|.+ +++++.++++ .+++++.    .+.+.|.+.|+|
T Consensus         1 ViIp~yn~~-~~l~~~l~sl~~q~~~~-~~eiiVvDd~S~d~t~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N   77 (219)
T cd06913           1 IILPVHNGE-QWLDECLESVLQQDFEG-TLELSVFNDASTDKSAE-IIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKN   77 (219)
T ss_pred             CEEeecCcH-HHHHHHHHHHHhCCCCC-CEEEEEEeCCCCccHHH-HHHHHHHhCcccCeEEEEecccCCCCccHHHHHH
Confidence            699999999 99999999999999873 24999999999999977 8888877643 2566654    235689999999


Q ss_pred             HHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeee
Q psy8674         348 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI  394 (439)
Q Consensus       348 ~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~  394 (439)
                      .|++.|+|||++|+|+|+.++|++++.++..+.+++..++++.+...
T Consensus        78 ~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~  124 (219)
T cd06913          78 QAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRI  124 (219)
T ss_pred             HHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEec
Confidence            99999999999999999999999999999888877776666655443

This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.

>PRK10063 putative glycosyl transferase; Provisional

Probab=99.79  E-value=1.5e-18  Score=159.06  Aligned_cols=115  Identities=18%  Similarity=0.195  Sum_probs=93.0

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhc---CCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKR---TPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT  345 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q---~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a  345 (439)
                      |+||||||+||++ +.|.+||+|+..|   .+.++  |||||||||+|+|.+ +++++....  +++++.. ++.|.+.|
T Consensus         1 ~~vSVIi~~yN~~-~~l~~~l~sl~~~~~~~~~~~--EiIVvDdgStD~t~~-i~~~~~~~~--~i~~i~~-~~~G~~~A   73 (248)
T PRK10063          1 MLLSVITVAFRNL-EGIVKTHASLRHLAQDPGISF--EWIVVDGGSNDGTRE-FLENLNGIF--NLRFVSE-PDNGIYDA   73 (248)
T ss_pred             CeEEEEEEeCCCH-HHHHHHHHHHHHHHhCCCCCE--EEEEEECcCcccHHH-HHHHhcccC--CEEEEEC-CCCCHHHH
Confidence            6899999999999 9999999999853   34555  999999999999987 888875432  4888865 46799999


Q ss_pred             HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674         346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                      +|.|++.|+|+|++|||+|+.+.|+.++.+......++..++++.
T Consensus        74 ~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~  118 (248)
T PRK10063         74 MNKGIAMAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGD  118 (248)
T ss_pred             HHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEee
Confidence            999999999999999999999999876654444444455555544

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=99.79  E-value=4.3e-19  Score=161.88  Aligned_cols=170  Identities=13%  Similarity=0.180  Sum_probs=111.4

Q ss_pred             hHHHHHHHHhc---CCcEEEEEecCCCCh-hHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeee
Q psy8674           3 DKKLEDYIERF---NGKVRLIRNTEREGL-IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID   78 (439)
Q Consensus         3 ~~~l~~~~~~~---~~~i~~i~~~~n~G~-a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~   78 (439)
                      .+.++++.+++   .++++++...+|.|+ ++|+|.|++.|+|+||+|+|+|++++|+||+.+...+......++.+...
T Consensus        46 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~  125 (232)
T cd06437          46 VRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWG  125 (232)
T ss_pred             HHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEeccee
Confidence            34555555432   247888887777785 78999999999999999999999999999999887775444445544332


Q ss_pred             cccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCcc
Q psy8674          79 GIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWG  158 (439)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~  158 (439)
                      ..+... ....       ....+.....+.   .   ...   ..........+.|+++++||++|+++||||+...   
T Consensus       126 ~~~~~~-~~~~-------~~~~~~~~~~~~---~---~~~---~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~~~~---  185 (232)
T cd06437         126 HINANY-SLLT-------RVQAMSLDYHFT---I---EQV---ARSSTGLFFNFNGTAGVWRKECIEDAGGWNHDTL---  185 (232)
T ss_pred             eEcCCC-chhh-------HhhhhhHHhhhh---H---hHh---hHhhcCCeEEeccchhhhhHHHHHHhCCCCCCcc---
Confidence            221111 0000       000000000000   0   000   0001111123467778899999999999999752   


Q ss_pred             chhhHHHHHHHHhCCcEEEecccceecccccccc
Q psy8674         159 GENFELSFKIWMCGGSIEWVPCSRIVSLIRPVFK  192 (439)
Q Consensus       159 ~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~~  192 (439)
                      .||+||++|++.+|+++.+.|++.++|.....+.
T Consensus       186 ~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~~~  219 (232)
T cd06437         186 TEDLDLSYRAQLKGWKFVYLDDVVVPAELPASMS  219 (232)
T ss_pred             hhhHHHHHHHHHCCCeEEEeccceeeeeCCcCHH
Confidence            4999999999999999999999999988655543

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

Probab=99.79  E-value=9.6e-19  Score=158.12  Aligned_cols=168  Identities=16%  Similarity=0.223  Sum_probs=113.6

Q ss_pred             hhHHHHHHHHhcC-CcEEEEEe----cCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeee
Q psy8674           2 LDKKLEDYIERFN-GKVRLIRN----TEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV   76 (439)
Q Consensus         2 ~~~~l~~~~~~~~-~~i~~i~~----~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~   76 (439)
                      +.+.+++|.++++ ++++++..    +.|.|++.|+|.|++.|+|+||+|||+|+.++|++|+.++..+.+++..++++.
T Consensus        41 t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~  120 (219)
T cd06913          41 SAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ  120 (219)
T ss_pred             HHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence            4567888887755 46777753    456899999999999999999999999999999999999998887766555544


Q ss_pred             eecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCC
Q psy8674          77 IDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLV  156 (439)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~  156 (439)
                      ...........         . .  .+.     ..+.......... ..  ..+......+++||++|+++|||||.+..
T Consensus       121 ~~~~~~~~~~~---------~-~--~~~-----~~~~~~~~~~~~~-~~--~~~~~~~~~~~~rr~~~~~~g~f~~~~~~  180 (219)
T cd06913         121 VRRIPEDSTER---------Y-T--RWI-----NTLTREQLLTQVY-TS--HGPTVIMPTWFCSREWFSHVGPFDEGGKG  180 (219)
T ss_pred             EEecCcccchh---------h-H--HHH-----HhcCHHHHHHHHH-hh--cCCccccccceeehhHHhhcCCccchhcc
Confidence            33222111000         0 0  000     0000000000000 00  00112223468999999999999998764


Q ss_pred             ccchhhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674         157 WGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       157 ~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      + +||+||++|+.++|+++.++|...+.+..++.
T Consensus       181 ~-~eD~~l~~r~~~~g~~i~~~~~~~~~yr~~~~  213 (219)
T cd06913         181 V-PEDLLFFYEHLRKGGGVYRVDRCLLLYRYHPG  213 (219)
T ss_pred             c-hhHHHHHHHHHHcCCceEEEcceeeeeeecCC
Confidence            4 49999999999999999999998887766544

This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=99.79  E-value=1.4e-18  Score=152.19  Aligned_cols=141  Identities=14%  Similarity=0.244  Sum_probs=103.8

Q ss_pred             hhHHHHHHHHhcCC-cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674           2 LDKKLEDYIERFNG-KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI   80 (439)
Q Consensus         2 ~~~~l~~~~~~~~~-~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~   80 (439)
                      +.+.++++.+..+. .+.+++.+.+.|.++++|.|++.|+|+||+|||+|+.++|+||+.+++.+.  +..++.+.....
T Consensus        40 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~--~~~~v~g~~~~~  117 (182)
T cd06420          40 TKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAE--PGVFLSGSRVLL  117 (182)
T ss_pred             HHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhC--CCcEEecceeec
Confidence            34556666664442 344455555678899999999999999999999999999999999999883  222332211111


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      ....                                           ......|++++++|+.|.++||||+.+..+++|
T Consensus       118 ~~~~-------------------------------------------~~~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~e  154 (182)
T cd06420         118 NEKL-------------------------------------------TERGIRGCNMSFWKKDLLAVNGFDEEFTGWGGE  154 (182)
T ss_pred             cccc-------------------------------------------ceeEeccceEEEEHHHHHHhCCCCcccccCCcc
Confidence            0000                                           002446788999999999999999999888889


Q ss_pred             hhHHHHHHHHhCCcEEEe-cccceeccc
Q psy8674         161 NFELSFKIWMCGGSIEWV-PCSRIVSLI  187 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~-p~~~v~H~~  187 (439)
                      |+||++|++++|+++... |.+.++|++
T Consensus       155 D~~l~~r~~~~g~~~~~~~~~~~~~h~~  182 (182)
T cd06420         155 DSELVARLLNSGIKFRKLKFAAIVFHLW  182 (182)
T ss_pred             hHHHHHHHHHcCCcEEEecccceeeecC
Confidence            999999999999665555 588889874

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=99.79  E-value=1.5e-18  Score=158.28  Aligned_cols=122  Identities=12%  Similarity=0.099  Sum_probs=100.6

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCC-HHHHHH
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG-LIRTRS  347 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g-~~~a~n  347 (439)
                      |+||||||+||++.+.|++||+|++.|++++..+|||||||||+|+|.+ +++++....  .++++..+.+.| +++++|
T Consensus         1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~n   77 (234)
T cd06421           1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRA-LAAELGVEY--GYRYLTRPDNRHAKAGNLN   77 (234)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHH-HHHHhhccc--CceEEEeCCCCCCcHHHHH
Confidence            5799999999986367999999999999987224999999999999877 888876543  456666666655 577899


Q ss_pred             HHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCC-CEEEEeeeee
Q psy8674         348 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDG  393 (439)
Q Consensus       348 ~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~  393 (439)
                      .|++.+++||++|+|+|+.++|++|+.+++.+.+++ .+++++....
T Consensus        78 ~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~  124 (234)
T cd06421          78 NALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFF  124 (234)
T ss_pred             HHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEE
Confidence            999999999999999999999999999999998844 4566554433

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.79  E-value=1.6e-18  Score=148.97  Aligned_cols=124  Identities=25%  Similarity=0.412  Sum_probs=106.7

Q ss_pred             HHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCccc
Q psy8674           8 DYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEF   87 (439)
Q Consensus         8 ~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~   87 (439)
                      +.+++..++++++..++|.|.++|+|.|++.|++++++|+|+|+.++|+|++.+++.+.+.+...+.+..          
T Consensus        42 ~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~----------  111 (166)
T cd04186          42 ELLRELFPEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK----------  111 (166)
T ss_pred             HHHHHhCCCeEEEecCCCcChHHHhhHHHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc----------
Confidence            3344433479999999999999999999999999999999999999999999999988776544332110          


Q ss_pred             ccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHH
Q psy8674          88 RSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFK  167 (439)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~R  167 (439)
                                                                  ..|++++++|++|+++||||+.+.. ++||.||++|
T Consensus       112 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~  146 (166)
T cd04186         112 --------------------------------------------VSGAFLLVRREVFEEVGGFDEDFFL-YYEDVDLCLR  146 (166)
T ss_pred             --------------------------------------------CceeeEeeeHHHHHHcCCCChhhhc-cccHHHHHHH
Confidence                                                        3678999999999999999999876 4599999999


Q ss_pred             HHHhCCcEEEecccceecc
Q psy8674         168 IWMCGGSIEWVPCSRIVSL  186 (439)
Q Consensus       168 l~~~G~~i~~~p~~~v~H~  186 (439)
                      +.+.|+++.+.|+..++|.
T Consensus       147 ~~~~g~~i~~~~~~~~~h~  165 (166)
T cd04186         147 ARLAGYRVLYVPQAVIYHH  165 (166)
T ss_pred             HHHcCCeEEEccceEEEec
Confidence            9999999999999999996

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=99.78  E-value=1.3e-18  Score=157.72  Aligned_cols=112  Identities=26%  Similarity=0.401  Sum_probs=99.8

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCC-cCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHh
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTP-AQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK  351 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~-~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~  351 (439)
                      ||||+||++ ..|.++|+|+.+|++ .++  |||||||||+|+|.+ +++++.+..+ .++++..+.+.|++.|+|.|++
T Consensus         1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~~--eiiiVDd~S~d~t~~-~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~   75 (224)
T cd06442           1 IIIPTYNER-ENIPELIERLDAALKGIDY--EIIVVDDNSPDGTAE-IVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFK   75 (224)
T ss_pred             CeEeccchh-hhHHHHHHHHHHhhcCCCe--EEEEEeCCCCCChHH-HHHHHHHhCC-ceEEEecCCCCChHHHHHHHHH
Confidence            699999999 999999999999987 555  999999999999977 8888877765 6888889999999999999999


Q ss_pred             hcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674         352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP  389 (439)
Q Consensus       352 ~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~  389 (439)
                      .|+|||++|+|+|+.++|+||+.+++.+..++..++++
T Consensus        76 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g  113 (224)
T cd06442          76 AARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG  113 (224)
T ss_pred             HcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence            99999999999999999999999999976655544443

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=99.78  E-value=2.6e-18  Score=157.13  Aligned_cols=117  Identities=17%  Similarity=0.235  Sum_probs=100.2

Q ss_pred             EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCC-HHHHHHHHH
Q psy8674         272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG-LIRTRSRGA  350 (439)
Q Consensus       272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g-~~~a~n~g~  350 (439)
                      |||||+||++.+.|.+||+|+.+|+++++  |||||||+|+|+|..+.++++.++.+.+++++...++.| ++.|+|.|+
T Consensus         1 siiip~~ne~~~~l~~~l~sl~~q~~~~~--eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~   78 (236)
T cd06435           1 SIHVPCYEEPPEMVKETLDSLAALDYPNF--EVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYAL   78 (236)
T ss_pred             CeeEeeCCCcHHHHHHHHHHHHhCCCCCc--EEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHH
Confidence            79999999974689999999999999877  999999999999864477777766665788888777777 489999999


Q ss_pred             hhcC--CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674         351 KESR--GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       351 ~~a~--~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                      +.+.  +|||+|+|+|+.++|++|..++..++++..++|.+.
T Consensus        79 ~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~  120 (236)
T cd06435          79 ERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAP  120 (236)
T ss_pred             HhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecC
Confidence            9986  799999999999999999999999976555666554

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional

Probab=99.78  E-value=2.8e-18  Score=163.77  Aligned_cols=125  Identities=21%  Similarity=0.217  Sum_probs=105.5

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCC------cCCcceEEEEeCCCChhhHHHHHHHHHHHc---CCcEEEEEc
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTP------AQYLEEIILVDDFSSKADLDQKLEDYIQRF---NGKVRLIRN  336 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~------~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---~~~v~~i~~  336 (439)
                      ...|.+|||||+||++ +.|.++|+++.++..      +...+|||||||||+|+|.+ +++++.+..   ..+++++..
T Consensus        67 ~~~~~isVVIP~yNe~-~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~-i~~~~~~~~~~~~~~i~vi~~  144 (333)
T PTZ00260         67 DSDVDLSIVIPAYNEE-DRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLK-VAKDFWRQNINPNIDIRLLSL  144 (333)
T ss_pred             CCCeEEEEEEeeCCCH-HHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHH-HHHHHHHhcCCCCCcEEEEEc
Confidence            4678999999999999 999999999876532      22245999999999999988 888887663   135999999


Q ss_pred             CCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhc---CCCEEEEeeee
Q psy8674         337 TEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS---DRKIMTVPVID  392 (439)
Q Consensus       337 ~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~---~~~~~v~~~~~  392 (439)
                      +.|.|++.|+|.|++.|+||+++++|+|+..+++.+..+++.+.+   ++.++|++...
T Consensus       145 ~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~  203 (333)
T PTZ00260        145 LRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRN  203 (333)
T ss_pred             CCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeecc
Confidence            999999999999999999999999999999999999999998864   55566666543

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=99.77  E-value=2.1e-18  Score=154.92  Aligned_cols=115  Identities=21%  Similarity=0.245  Sum_probs=101.1

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCC----cCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHH
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTP----AQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR  348 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~----~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~  348 (439)
                      ||||+||++ +.|.+||+++.+|..    .++  |||||||||+|+|.+ +++++.+.++..++++..+.|.|++.|+|.
T Consensus         1 iiip~yN~~-~~l~~~l~~l~~~~~~~~~~~~--eiivvdd~S~D~t~~-~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~   76 (211)
T cd04188           1 VVIPAYNEE-KRLPPTLEEAVEYLEERPSFSY--EIIVVDDGSKDGTAE-VARKLARKNPALIRVLTLPKNRGKGGAVRA   76 (211)
T ss_pred             CEEcccChH-HHHHHHHHHHHHHHhccCCCCE--EEEEEeCCCCCchHH-HHHHHHHhCCCcEEEEEcccCCCcHHHHHH
Confidence            699999999 999999999998864    445  999999999999987 899888776644689989999999999999


Q ss_pred             HHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674         349 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       349 g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~  391 (439)
                      |++.|+||||+++|+|+.+++++++.+++.+..++..++++..
T Consensus        77 g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r  119 (211)
T cd04188          77 GMLAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSR  119 (211)
T ss_pred             HHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEe
Confidence            9999999999999999999999999999997666665555443

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=99.77  E-value=4.6e-18  Score=161.90  Aligned_cols=118  Identities=25%  Similarity=0.256  Sum_probs=100.1

Q ss_pred             CCceEEEEEecCCChhHHHHHHHHHH---hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHH
Q psy8674         268 LPKASVILVFHNEGFSSLMRTVHSII---KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIR  344 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l~sl~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~  344 (439)
                      ++++|||||+||++ +.|.++++++.   +|...++  |||||||||+|+|.+ +++++.+..+.++..+....|.|++.
T Consensus         5 ~~~vSVVIP~yNE~-~~i~~~l~~l~~~~~~~~~~~--EIIvVDDgS~D~T~~-il~~~~~~~~~~v~~i~~~~n~G~~~   80 (325)
T PRK10714          5 IKKVSVVIPVYNEQ-ESLPELIRRTTAACESLGKEY--EILLIDDGSSDNSAE-MLVEAAQAPDSHIVAILLNRNYGQHS   80 (325)
T ss_pred             CCeEEEEEcccCch-hhHHHHHHHHHHHHHhCCCCE--EEEEEeCCCCCcHHH-HHHHHHhhcCCcEEEEEeCCCCCHHH
Confidence            46799999999999 99999988875   3554445  999999999999988 88887665444677777889999999


Q ss_pred             HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674         345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                      |+|.|++.|+||+++++|+|+..+|+++.++++.++++. ++|++.
T Consensus        81 A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~-DvV~~~  125 (325)
T PRK10714         81 AIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGY-DVVGTV  125 (325)
T ss_pred             HHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhC-CEEEEE
Confidence            999999999999999999999999999999999997654 445544

>PRK11204 N-glycosyltransferase; Provisional

Probab=99.76  E-value=2.5e-18  Score=170.88  Aligned_cols=168  Identities=17%  Similarity=0.207  Sum_probs=119.7

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCe-Eeeeeeecc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGI   80 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~-~v~~~~~~~   80 (439)
                      +.+.++++.++++ +++++++++|.|.++|+|.|++.|+|||++++|+|+.++|++|+.+++.+++++.. ++.+.....
T Consensus        97 t~~~l~~~~~~~~-~v~~i~~~~n~Gka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~  175 (420)
T PRK11204         97 TGEILDRLAAQIP-RLRVIHLAENQGKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIR  175 (420)
T ss_pred             HHHHHHHHHHhCC-cEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceec
Confidence            4567778888876 89999999999999999999999999999999999999999999999999776654 343322221


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      +..+....       ...+.+..     .........      ........++|+++++||++++++||||+.+.   .|
T Consensus       176 ~~~~~~~~-------~~~~~~~~-----~~~~~~~~~------~~~~~~~~~~G~~~~~rr~~l~~vgg~~~~~~---~E  234 (420)
T PRK11204        176 NRSTLLGR-------IQVGEFSS-----IIGLIKRAQ------RVYGRVFTVSGVITAFRKSALHEVGYWSTDMI---TE  234 (420)
T ss_pred             cchhHHHH-------HHHHHHHH-----hhhHHHHHH------HHhCCceEecceeeeeeHHHHHHhCCCCCCcc---cc
Confidence            11110000       00000000     000000000      00112234579999999999999999999873   49


Q ss_pred             hhHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPVF  191 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~  191 (439)
                      |.|+++|++++|+++.+.|++.++|.....+
T Consensus       235 D~~l~~rl~~~G~~i~~~p~~~~~~~~p~t~  265 (420)
T PRK11204        235 DIDISWKLQLRGWDIRYEPRALCWILMPETL  265 (420)
T ss_pred             hHHHHHHHHHcCCeEEeccccEEEeECcccH
Confidence            9999999999999999999999998865543

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=99.76  E-value=9.5e-18  Score=149.00  Aligned_cols=118  Identities=19%  Similarity=0.255  Sum_probs=99.4

Q ss_pred             EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHh
Q psy8674         272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK  351 (439)
Q Consensus       272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~  351 (439)
                      |||||+||++ +.|.+||.|+.+|+++++  |||||||+|+|++.+ +++++...    +.++...++.|.+.++|.|++
T Consensus         1 sivi~~~n~~-~~l~~~l~sl~~q~~~~~--evivvDd~s~d~~~~-~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~   72 (202)
T cd06433           1 SIITPTYNQA-ETLEETIDSVLSQTYPNI--EYIVIDGGSTDGTVD-IIKKYEDK----ITYWISEPDKGIYDAMNKGIA   72 (202)
T ss_pred             CEEEeccchH-HHHHHHHHHHHhCCCCCc--eEEEEeCCCCccHHH-HHHHhHhh----cEEEEecCCcCHHHHHHHHHH
Confidence            6999999999 999999999999999876  999999999999877 88877543    344456788999999999999


Q ss_pred             hcCCCEEEEEcCCCccCCCChHHHHHhhhc-CCCEEEEeeeeeecCC
Q psy8674         352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYS-DRKIMTVPVIDGIDYQ  397 (439)
Q Consensus       352 ~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~  397 (439)
                      .|+++|++++|+|+.+.++++..++..+.. +...++++.....+.+
T Consensus        73 ~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~  119 (202)
T cd06433          73 LATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDEN  119 (202)
T ss_pred             HcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCC
Confidence            999999999999999999999999966644 4456666665544433

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.76  E-value=6.8e-18  Score=150.51  Aligned_cols=135  Identities=19%  Similarity=0.182  Sum_probs=107.4

Q ss_pred             hHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhc---cCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeec
Q psy8674           3 DKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKES---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG   79 (439)
Q Consensus         3 ~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A---~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~   79 (439)
                      .+.++++.+..+  ++++.+++|.|.+.|+|.|+..|   ++||++|+|+|++++|+||+.+++.+.+....++.+....
T Consensus        41 ~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  118 (202)
T cd04185          41 AEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLD  118 (202)
T ss_pred             HHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEc
Confidence            334444443332  89999999999999999999876   6999999999999999999999999984444444332211


Q ss_pred             ccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccc
Q psy8674          80 IDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGG  159 (439)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~  159 (439)
                      .+.                                                  .+++++++|++|+++|+|++.+++++ 
T Consensus       119 ~~~--------------------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~-  147 (202)
T cd04185         119 PDG--------------------------------------------------SFVGVLISRRVVEKIGLPDKEFFIWG-  147 (202)
T ss_pred             CCC--------------------------------------------------ceEEEEEeHHHHHHhCCCChhhhccc-
Confidence            000                                                  23568999999999999999988765 


Q ss_pred             hhhHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674         160 ENFELSFKIWMCGGSIEWVPCSRIVSLIRPVF  191 (439)
Q Consensus       160 ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~  191 (439)
                      ||+||++|++++|+++ +.|.+.++|......
T Consensus       148 eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~~  178 (202)
T cd04185         148 DDTEYTLRASKAGPGI-YVPDAVVVHKTAINK  178 (202)
T ss_pred             hHHHHHHHHHHcCCcE-EecceEEEEcccccc
Confidence            9999999999999999 999999999975543

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=99.76  E-value=6.7e-18  Score=155.42  Aligned_cols=169  Identities=18%  Similarity=0.209  Sum_probs=117.3

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +.+.++++.++.+ .++++.++ +.|.+.|+|.|++.|+|||++|+|+|+.++|+||+.+++.+.+.+..++.+......
T Consensus        45 ~~~~~~~~~~~~~-~v~~i~~~-~~~~~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~  122 (249)
T cd02525          45 TREIVQEYAAKDP-RIRLIDNP-KRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIG  122 (249)
T ss_pred             HHHHHHHHHhcCC-eEEEEeCC-CCCchHHHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCC
Confidence            4566777766664 89999854 568999999999999999999999999999999999999888766666554433222


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN  161 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED  161 (439)
                      ......            .+.+...... ....  .  ..............|++++++|++|+++|+||+.+.  .+||
T Consensus       123 ~~~~~~------------~~~~~~~~~~-~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~eD  183 (249)
T cd02525         123 ESKFQK------------AIAVAQSSPL-GSGG--S--AYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDESLV--RNED  183 (249)
T ss_pred             CChHHH------------HHHHHhhchh-ccCC--c--cccccccccccccccccceEEHHHHHHhCCCCcccC--ccch
Confidence            111100            0000000000 0000  0  000000000224468889999999999999999975  3599


Q ss_pred             hHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674         162 FELSFKIWMCGGSIEWVPCSRIVSLIRPVF  191 (439)
Q Consensus       162 ~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~  191 (439)
                      .||++|+.++|+++.+.|++.+.|..+..+
T Consensus       184 ~~l~~r~~~~G~~~~~~~~~~~~~~~~~s~  213 (249)
T cd02525         184 AELNYRLRKAGYKIWLSPDIRVYYYPRSTL  213 (249)
T ss_pred             hHHHHHHHHcCcEEEEcCCeEEEEcCCCCH
Confidence            999999999999999999999999876544

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional

Probab=99.74  E-value=9.9e-18  Score=157.86  Aligned_cols=122  Identities=21%  Similarity=0.270  Sum_probs=97.2

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEE-EcCCCCCHHHH
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLI-RNTEREGLIRT  345 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i-~~~~~~g~~~a  345 (439)
                      ..|++|||||+||++ +.|.+||+++.+|.......|||||||||+|+|.+ +++++....-....++ ..+.|.|++.|
T Consensus        29 ~~~~vSVVIPayNee-~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~-ia~~~~~~v~~~~~~~~~~~~n~Gkg~A  106 (306)
T PRK13915         29 AGRTVSVVLPALNEE-ETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAE-RAAAAGARVVSREEILPELPPRPGKGEA  106 (306)
T ss_pred             CCCCEEEEEecCCcH-HHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHH-HHHHhcchhhcchhhhhccccCCCHHHH
Confidence            467899999999999 99999999999887522234999999999999987 7776533211111122 23678999999


Q ss_pred             HHHHHhhcCCCEEEEEcCCCc-cCCCChHHHHHhhh-cCCCEEEEee
Q psy8674         346 RSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIY-SDRKIMTVPV  390 (439)
Q Consensus       346 ~n~g~~~a~~d~i~~ld~D~~-~~~~~l~~l~~~~~-~~~~~~v~~~  390 (439)
                      +|.|+..++||+++|+|+|+. ++|+||..+++.+. ++...+|.+.
T Consensus       107 ~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~  153 (306)
T PRK13915        107 LWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF  153 (306)
T ss_pred             HHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence            999999999999999999997 89999999999997 4455666654

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=99.74  E-value=1.8e-17  Score=152.53  Aligned_cols=121  Identities=22%  Similarity=0.314  Sum_probs=103.8

Q ss_pred             ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHH
Q psy8674         270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG  349 (439)
Q Consensus       270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g  349 (439)
                      ++|||||+||++ +.|.++|+|+.+|+++...+|||||||+|+|+|.+ .++.+.+..+ .++++..+ +.|.+.|+|.|
T Consensus         1 ~~sIiip~~n~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~-~~~~~~~~~~-~v~~i~~~-~~~~~~a~N~g   76 (249)
T cd02525           1 FVSIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTRE-IVQEYAAKDP-RIRLIDNP-KRIQSAGLNIG   76 (249)
T ss_pred             CEEEEEEcCCch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHH-HHHHHHhcCC-eEEEEeCC-CCCchHHHHHH
Confidence            489999999999 99999999999999853344999999999999877 8888876644 68888654 56889999999


Q ss_pred             HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeee
Q psy8674         350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI  394 (439)
Q Consensus       350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~  394 (439)
                      ++.+++||++|+|+|+.++|+||+.+++.+.+++..++++.....
T Consensus        77 ~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~  121 (249)
T cd02525          77 IRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETI  121 (249)
T ss_pred             HHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecC
Confidence            999999999999999999999999999998887777666555433

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.74  E-value=1.6e-17  Score=150.85  Aligned_cols=117  Identities=26%  Similarity=0.363  Sum_probs=98.5

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc-CCcEEEEEcC--CCCCHHHHHHHH
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF-NGKVRLIRNT--EREGLIRTRSRG  349 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~v~~i~~~--~~~g~~~a~n~g  349 (439)
                      ||||+||+. +.|.+||+|++.|++++..+|||||||||+|+|.+ +++ +.... ..+++++..+  .+.|++.++|.|
T Consensus         1 viip~~n~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~-~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g   77 (229)
T cd04192           1 VVIAARNEA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQ-ILE-FAAAKPNFQLKILNNSRVSISGKKNALTTA   77 (229)
T ss_pred             CEEEecCcH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHH-HHH-HHHhCCCcceEEeeccCcccchhHHHHHHH
Confidence            699999999 99999999999999987234999999999999877 666 33222 2367777766  478899999999


Q ss_pred             HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674         350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID  392 (439)
Q Consensus       350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~  392 (439)
                      ++.+++||++|+|+|+.+.|+||+.+++.+.+++..++++...
T Consensus        78 ~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~  120 (229)
T cd04192          78 IKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVI  120 (229)
T ss_pred             HHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeee
Confidence            9999999999999999999999999999988877766665443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=99.74  E-value=1.5e-17  Score=146.01  Aligned_cols=115  Identities=24%  Similarity=0.310  Sum_probs=100.2

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE  352 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~  352 (439)
                      ||||+||++ +.|.+||+|+.+|.++...+|||||||+|+|++.+ +++++..+.+ .++++..+++.|++.++|.|++.
T Consensus         1 iii~~~n~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~-~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~   77 (185)
T cd04179           1 VVIPAYNEE-ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAE-IARELAARVP-RVRVIRLSRNFGKGAAVRAGFKA   77 (185)
T ss_pred             CeecccChH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHH-HHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHH
Confidence            689999999 99999999999998732234999999999999877 8888887765 67889899999999999999999


Q ss_pred             cCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674         353 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       353 a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                      |+|||++|+|+|+.+.|+||++++..+...+..++++.
T Consensus        78 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~  115 (185)
T cd04179          78 ARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS  115 (185)
T ss_pred             hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence            99999999999999999999999999666555544443

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.74  E-value=1.3e-17  Score=148.62  Aligned_cols=117  Identities=19%  Similarity=0.173  Sum_probs=102.4

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE  352 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~  352 (439)
                      ||||+||++ +.|.+||+|+.+|+++.+  |||||||||+|.|.+ +++++....  +++++..++|.|.+.++|.|++.
T Consensus         1 viI~~~n~~-~~l~~~l~sl~~q~~~~~--eiiivD~~s~d~t~~-~~~~~~~~~--~i~~~~~~~n~g~~~~~n~~~~~   74 (202)
T cd04185           1 AVVVTYNRL-DLLKECLDALLAQTRPPD--HIIVIDNASTDGTAE-WLTSLGDLD--NIVYLRLPENLGGAGGFYEGVRR   74 (202)
T ss_pred             CEEEeeCCH-HHHHHHHHHHHhccCCCc--eEEEEECCCCcchHH-HHHHhcCCC--ceEEEECccccchhhHHHHHHHH
Confidence            699999999 999999999999998876  999999999999877 888775543  37889899999999999999987


Q ss_pred             c---CCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeec
Q psy8674         353 S---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID  395 (439)
Q Consensus       353 a---~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~  395 (439)
                      +   ++||++|+|+|+.++++|++.+++.+.++..+++.|.+...+
T Consensus        75 a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  120 (202)
T cd04185          75 AYELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPD  120 (202)
T ss_pred             HhccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCC
Confidence            5   699999999999999999999999998666777777665544

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=99.74  E-value=2.1e-17  Score=142.94  Aligned_cols=121  Identities=24%  Similarity=0.358  Sum_probs=102.5

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE  352 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~  352 (439)
                      ||||+||++ +.|.+||+|+++|+++++  |||||||+|+|.|.+ .+.++....+..+.++..+++.|++.++|.|++.
T Consensus         1 Viip~~n~~-~~l~~~l~sl~~q~~~~~--~iivvdd~s~d~t~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~   76 (180)
T cd06423           1 IIVPAYNEE-AVIERTIESLLALDYPKL--EVIVVDDGSTDDTLE-ILEELAALYIRRVLVVRDKENGGKAGALNAGLRH   76 (180)
T ss_pred             CeecccChH-HHHHHHHHHHHhCCCCce--EEEEEeCCCccchHH-HHHHHhccccceEEEEEecccCCchHHHHHHHHh
Confidence            689999999 999999999999998766  999999999999877 7777665543357778888999999999999999


Q ss_pred             cCCCEEEEEcCCCccCCCChHHHHHhhhcCC-CEEEEeeeeeecCC
Q psy8674         353 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQ  397 (439)
Q Consensus       353 a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~  397 (439)
                      ++++|++|+|+|+.+.+++|+.++..+...+ ..++++.....+..
T Consensus        77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~  122 (180)
T cd06423          77 AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGS  122 (180)
T ss_pred             cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCc
Confidence            9999999999999999999999966665544 46666666555444

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=99.74  E-value=8.3e-18  Score=167.62  Aligned_cols=168  Identities=20%  Similarity=0.220  Sum_probs=119.1

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCe-Eeeeeeecc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGI   80 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~-~v~~~~~~~   80 (439)
                      +.+.++++.++++ ++++++.++|.|.++|+|.|++.|+|||++++|+|++++|++|+.+++.+.+++.. ++.+.....
T Consensus       118 t~~~~~~~~~~~~-~v~vv~~~~n~Gka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~  196 (444)
T PRK14583        118 TAQVLDALLAEDP-RLRVIHLAHNQGKAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIR  196 (444)
T ss_pred             HHHHHHHHHHhCC-CEEEEEeCCCCCHHHHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceec
Confidence            4567778888886 89999999999999999999999999999999999999999999999999876654 333222221


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      ...+....       ...+.+...  +   ......   ..   .......++|+++++||++++++||||++..   .|
T Consensus       197 ~~~~~~~~-------~~~~e~~~~--~---~~~~~~---~~---~~g~~~~~sG~~~~~rr~al~~vGg~~~~~i---~E  255 (444)
T PRK14583        197 TRSTLIGR-------VQVGEFSSI--I---GLIKRT---QR---VYGQVFTVSGVVAAFRRRALADVGYWSPDMI---TE  255 (444)
T ss_pred             CCCcchhh-------HHHHHHHHH--H---HHHHHH---HH---HhCCceEecCceeEEEHHHHHHcCCCCCCcc---cc
Confidence            11110000       000000000  0   000000   00   0012234579999999999999999999863   49


Q ss_pred             hhHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPVF  191 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~  191 (439)
                      |.|+++|++.+||++.+.|++.+++.....+
T Consensus       256 D~dl~~rl~~~G~~i~~~p~a~~~~~~p~t~  286 (444)
T PRK14583        256 DIDISWKLQLKHWSVFFEPRGLCWILMPETL  286 (444)
T ss_pred             cHHHHHHHHHcCCeEEEeeccEEeeeCCCCH
Confidence            9999999999999999999999988755443

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.73  E-value=1.3e-17  Score=151.50  Aligned_cols=156  Identities=17%  Similarity=0.220  Sum_probs=106.4

Q ss_pred             CcEEEEEec--CCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccC
Q psy8674          15 GKVRLIRNT--EREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYE   92 (439)
Q Consensus        15 ~~i~~i~~~--~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   92 (439)
                      ++++++..+  .|.|.+.|+|.|++.|+|+||+|+|+|+.+.|+||+.+++.+.+++..++++.........+...    
T Consensus        55 ~~v~~~~~~~~~~~g~~~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~----  130 (229)
T cd04192          55 FQLKILNNSRVSISGKKNALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAK----  130 (229)
T ss_pred             cceEEeeccCcccchhHHHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHH----
Confidence            589999876  58899999999999999999999999999999999999999887766665544333211110000    


Q ss_pred             CCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhC
Q psy8674          93 PDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCG  172 (439)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G  172 (439)
                          . ..+.+....       .....   ...........|+++++||++|+++||||+.++.. .||.|+++|+.++|
T Consensus       131 ----~-~~~~~~~~~-------~~~~~---~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~~~~~-~eD~~~~~~~~~~g  194 (229)
T cd04192         131 ----F-QRLDWLSLL-------GLIAG---SFGLGKPFMCNGANMAYRKEAFFEVGGFEGNDHIA-SGDDELLLAKVASK  194 (229)
T ss_pred             ----H-HHHHHHHHH-------HHHhh---HHHhcCccccccceEEEEHHHHHHhcCCccccccc-cCCHHHHHHHHHhC
Confidence                0 000000000       00000   00001112346889999999999999999987654 59999999999999


Q ss_pred             C-cEEEe--cccceecccccc
Q psy8674         173 G-SIEWV--PCSRIVSLIRPV  190 (439)
Q Consensus       173 ~-~i~~~--p~~~v~H~~~~~  190 (439)
                      + ++.+.  |.+.++|.+...
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~  215 (229)
T cd04192         195 YPKVAYLKNPEALVTTQPVTS  215 (229)
T ss_pred             CCCEEEeeCcchheecCCchh
Confidence            9 88876  556655554443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=99.73  E-value=1.5e-17  Score=151.79  Aligned_cols=166  Identities=12%  Similarity=0.112  Sum_probs=111.5

Q ss_pred             hHHHHHHHHhcCCcEEEEEecCCCCh-hHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC-eEeeeeeecc
Q psy8674           3 DKKLEDYIERFNGKVRLIRNTEREGL-IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGI   80 (439)
Q Consensus         3 ~~~l~~~~~~~~~~i~~i~~~~n~G~-a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~   80 (439)
                      .+.++++..++  +++++..+.|.|. ++++|.|++.|+||||+|+|+|+.++|+||+.++..+.+++. +++.+.....
T Consensus        48 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~  125 (234)
T cd06421          48 RALAAELGVEY--GYRYLTRPDNRHAKAGNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFY  125 (234)
T ss_pred             HHHHHHhhccc--CceEEEeCCCCCCcHHHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEe
Confidence            34455554443  4677877777764 667899999999999999999999999999999999987554 4454433222


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      ......         .....+.+..    ..+.......    ........+.|+++++||++|+++|||++.+.   +|
T Consensus       126 ~~~~~~---------~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~g~~~~~r~~~~~~ig~~~~~~~---~e  185 (234)
T cd06421         126 NPDPFD---------WLADGAPNEQ----ELFYGVIQPG----RDRWGAAFCCGSGAVVRREALDEIGGFPTDSV---TE  185 (234)
T ss_pred             cCCcch---------hHHHHHHHHH----HHHHHHHHHH----HhhcCCceecCceeeEeHHHHHHhCCCCccce---ec
Confidence            111100         0000000000    0000000000    00122446678999999999999999998763   49


Q ss_pred             hhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      |++|++|+.++|+++.+.|++.++|.....
T Consensus       186 D~~l~~r~~~~g~~i~~~~~~~~~~~~~~~  215 (234)
T cd06421         186 DLATSLRLHAKGWRSVYVPEPLAAGLAPET  215 (234)
T ss_pred             cHHHHHHHHHcCceEEEecCccccccCCcc
Confidence            999999999999999999999998875444

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=99.73  E-value=3.1e-17  Score=149.82  Aligned_cols=119  Identities=21%  Similarity=0.288  Sum_probs=99.9

Q ss_pred             ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHH
Q psy8674         270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG  349 (439)
Q Consensus       270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g  349 (439)
                      +||||||+||++.+.|.+||+|+.+|+  .+  |||||||+|+|++.+ .+.... .. ..+.++ ..++.|++.++|.|
T Consensus         1 ~isVvIp~~ne~~~~l~~~l~sl~~q~--~~--eiivvdd~s~d~~~~-~l~~~~-~~-~~~~v~-~~~~~g~~~a~n~g   72 (235)
T cd06434           1 DVTVIIPVYDEDPDVFRECLRSILRQK--PL--EIIVVTDGDDEPYLS-ILSQTV-KY-GGIFVI-TVPHPGKRRALAEG   72 (235)
T ss_pred             CeEEEEeecCCChHHHHHHHHHHHhCC--CC--EEEEEeCCCChHHHH-HHHhhc-cC-CcEEEE-ecCCCChHHHHHHH
Confidence            489999999997689999999999998  35  999999999999876 553322 22 246665 56788999999999


Q ss_pred             HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecC
Q psy8674         350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY  396 (439)
Q Consensus       350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~  396 (439)
                      ++.+++||++|+|+|+.++++||+++++.+.++..+++++.+...+.
T Consensus        73 ~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~  119 (235)
T cd06434          73 IRHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRP  119 (235)
T ss_pred             HHHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecC
Confidence            99999999999999999999999999999996666777777665554

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine

Probab=99.73  E-value=3.3e-17  Score=144.71  Aligned_cols=117  Identities=19%  Similarity=0.255  Sum_probs=96.3

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC---CCCCHHHHHHHH
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT---EREGLIRTRSRG  349 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~---~~~g~~~a~n~g  349 (439)
                      ||||+||++ +.|.+||+||.+|+ +.+  |||||||+|+|.|.+ +++ +... ..++++++..   .+.|++.|+|.|
T Consensus         1 ViIp~~Ne~-~~l~~~l~sl~~~~-~~~--eIivvdd~S~D~t~~-~~~-~~~~-~~~v~~i~~~~~~~~~Gk~~aln~g   73 (191)
T cd06436           1 VLVPCLNEE-AVIQRTLASLLRNK-PNF--LVLVIDDASDDDTAG-IVR-LAIT-DSRVHLLRRHLPNARTGKGDALNAA   73 (191)
T ss_pred             CEEeccccH-HHHHHHHHHHHhCC-CCe--EEEEEECCCCcCHHH-HHh-heec-CCcEEEEeccCCcCCCCHHHHHHHH
Confidence            699999999 99999999999998 655  999999999999987 766 3222 2368888653   568999999999


Q ss_pred             HhhcC-----------CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecC
Q psy8674         350 AKESR-----------GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY  396 (439)
Q Consensus       350 ~~~a~-----------~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~  396 (439)
                      ++.++           +++++++|+|+.++|++|+.+...+.++...++.+.+...+.
T Consensus        74 ~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~  131 (191)
T cd06436          74 YDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNR  131 (191)
T ss_pred             HHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecC
Confidence            99875           379999999999999999998888876655666666655554

N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=99.73  E-value=7.8e-18  Score=154.47  Aligned_cols=152  Identities=14%  Similarity=0.109  Sum_probs=99.7

Q ss_pred             cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcC-CCe-EeeeeeecccCCCcccccccCC
Q psy8674          16 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD-RKI-MTVPVIDGIDYQTWEFRSVYEP   93 (439)
Q Consensus        16 ~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~-~~~-~v~~~~~~~~~~~~~~~~~~~~   93 (439)
                      +|+++.+.+|.|.++|+|.|++.|+||||+|+|+|+.++|+||.++++.+.++ +.. ++++.+........ ...    
T Consensus        60 ~i~~~~~~~~~G~~~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~----  134 (241)
T cd06427          60 RVVVVPPSQPRTKPKACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNAREN-WLT----  134 (241)
T ss_pred             eEEEecCCCCCchHHHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCcc-HHH----
Confidence            56666777889999999999999999999999999999999999999999864 333 33333222111100 000    


Q ss_pred             CCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCC
Q psy8674          94 DHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGG  173 (439)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~  173 (439)
                         ......+...+      .......   ........+.|+|+++||++|+++||||+..  + .||.||++|+..+|+
T Consensus       135 ---~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~g~~~~~rr~~~~~vgg~~~~~--~-~eD~~l~~rl~~~G~  199 (241)
T cd06427         135 ---RMFALEYAAWF------DYLLPGL---ARLGLPIPLGGTSNHFRTDVLRELGGWDPFN--V-TEDADLGLRLARAGY  199 (241)
T ss_pred             ---HHHHHHHHHHH------HHHHHHH---HhcCCeeecCCchHHhhHHHHHHcCCCCccc--c-hhhHHHHHHHHHCCc
Confidence               00000000000      0000000   0000111346788999999999999999843  3 499999999999999


Q ss_pred             cEEEecccceeccc
Q psy8674         174 SIEWVPCSRIVSLI  187 (439)
Q Consensus       174 ~i~~~p~~~v~H~~  187 (439)
                      ++.++|...+.|.+
T Consensus       200 r~~~~~~~~~~~~~  213 (241)
T cd06427         200 RTGVLNSTTLEEAN  213 (241)
T ss_pred             eEEEecccccccCc
Confidence            99999886655543

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=99.72  E-value=4.5e-17  Score=142.53  Aligned_cols=113  Identities=24%  Similarity=0.294  Sum_probs=97.1

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcC---CcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHH
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRT---PAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG  349 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~---~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g  349 (439)
                      ||||+||++ +.|.++|+++..+.   +..+  |||||||||+|+|.+ +++.+....+ +++++...+|.|.+.|+|.|
T Consensus         1 viIp~~n~~-~~l~~~l~sl~~~~~~~~~~~--eiivvdd~s~d~t~~-~~~~~~~~~~-~i~~i~~~~n~G~~~a~n~g   75 (181)
T cd04187           1 IVVPVYNEE-ENLPELYERLKAVLESLGYDY--EIIFVDDGSTDRTLE-ILRELAARDP-RVKVIRLSRNFGQQAALLAG   75 (181)
T ss_pred             CEEeecCch-hhHHHHHHHHHHHHHhcCCCe--EEEEEeCCCCccHHH-HHHHHHhhCC-CEEEEEecCCCCcHHHHHHH
Confidence            699999999 99999999887654   3445  999999999999877 8888877665 79999889999999999999


Q ss_pred             HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674         350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~  391 (439)
                      ++.++++|++++|+|+.++++||+.+++.+..+. .+|.+..
T Consensus        76 ~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~v~g~~  116 (181)
T cd04187          76 LDHARGDAVITMDADLQDPPELIPEMLAKWEEGY-DVVYGVR  116 (181)
T ss_pred             HHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCCC-cEEEEEe
Confidence            9999999999999999999999999999965544 4444443

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=99.72  E-value=6.6e-17  Score=141.77  Aligned_cols=109  Identities=21%  Similarity=0.207  Sum_probs=90.7

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE  352 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~  352 (439)
                      ||||+||++ +.|.+||+++.+|+++...+|||||||||+|+|.+ +++++    ...+.+...+.+.|++.|+|.|+..
T Consensus         1 VvIp~~ne~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~-~~~~~----~~~~~~~~~~~~~gk~~aln~g~~~   74 (183)
T cd06438           1 ILIPAHNEE-AVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQ-VARAA----GATVLERHDPERRGKGYALDFGFRH   74 (183)
T ss_pred             CEEeccchH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHH-HHHHc----CCeEEEeCCCCCCCHHHHHHHHHHH
Confidence            699999999 99999999999999864345999999999999876 66543    2234444456788999999999987


Q ss_pred             c-----CCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEE
Q psy8674         353 S-----RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMT  387 (439)
Q Consensus       353 a-----~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v  387 (439)
                      +     ++|+++++|+|+.++|+||..++..+.++...+.
T Consensus        75 a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~  114 (183)
T cd06438          75 LLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQ  114 (183)
T ss_pred             HHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeE
Confidence            6     4999999999999999999999999987654433

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>KOG2978|consensus

Probab=99.71  E-value=9.1e-17  Score=132.50  Aligned_cols=147  Identities=21%  Similarity=0.247  Sum_probs=115.7

Q ss_pred             CCceEEEEEecCCChhHHHHHH---HHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC-CcEEEEEcCCCCCHH
Q psy8674         268 LPKASVILVFHNEGFSSLMRTV---HSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIRNTEREGLI  343 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l---~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~v~~i~~~~~~g~~  343 (439)
                      +++.|||+|+|||. +.|.-++   .....+...+  +|||||||+|.|+|.+ .++.+++.+. .++.+.......|.+
T Consensus         2 ~~kYsvilPtYnEk-~Nlpi~~~li~~~~~e~~~~--~eiIivDD~SpDGt~~-~a~~L~k~yg~d~i~l~pR~~klGLg   77 (238)
T KOG2978|consen    2 SIKYSVILPTYNEK-ENLPIITRLIAKYMSEEGKK--YEIIIVDDASPDGTQE-VAKALQKIYGEDNILLKPRTKKLGLG   77 (238)
T ss_pred             CcceeEEeccccCC-CCCeeeHHHHHhhhhhhcCc--eEEEEEeCCCCCccHH-HHHHHHHHhCCCcEEEEeccCcccch
Confidence            35789999999998 6665333   3333333334  4999999999999988 8888876654 478888888889999


Q ss_pred             HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCCCCCceeeeeccceeEe
Q psy8674         344 RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKE  423 (439)
Q Consensus       344 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~  423 (439)
                      .|.-.|++.|+|+|+++||+|...+|.++.++++...++..++|.+.         .|.++       -|.+-|.|..+.
T Consensus        78 tAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GT---------RYa~~-------ggV~gW~mkRk~  141 (238)
T KOG2978|consen   78 TAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGT---------RYAGG-------GGVYGWDMKRKI  141 (238)
T ss_pred             HHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeee---------eEcCC-------CceecchhhHHH
Confidence            99999999999999999999999999999999999999887777664         56533       155668888776


Q ss_pred             ecCCHHHHhhc
Q psy8674         424 NELPEREAKKR  434 (439)
Q Consensus       424 ~~~~~~~~~~~  434 (439)
                      ...-++-+.+.
T Consensus       142 IS~gAn~la~~  152 (238)
T KOG2978|consen  142 ISRGANFLARI  152 (238)
T ss_pred             HhhhhHHHHHH
Confidence            66666655543

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=99.71  E-value=8.4e-17  Score=140.83  Aligned_cols=114  Identities=15%  Similarity=0.337  Sum_probs=94.0

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEE-EEEcCCCCCHHHHHHHHHh
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVR-LIRNTEREGLIRTRSRGAK  351 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~-~i~~~~~~g~~~a~n~g~~  351 (439)
                      ||||+||+. +.|.+||+|+.+|+++++  |||||||+|+|.|.+ +++++....+.++. +++.+.+.|.+.++|.|++
T Consensus         1 ivip~~n~~-~~l~~~l~sl~~q~~~~~--eiivvdd~s~d~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~   76 (182)
T cd06420           1 LIITTYNRP-EALELVLKSVLNQSILPF--EVIIADDGSTEETKE-LIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIA   76 (182)
T ss_pred             CEEeecCCh-HHHHHHHHHHHhccCCCC--EEEEEeCCCchhHHH-HHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHH
Confidence            699999999 999999999999998877  999999999999876 88887664433333 4444455678999999999


Q ss_pred             hcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674         352 ESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       352 ~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~  391 (439)
                      .++|+|++|+|+|+.++++||+.+++.+ .....++++.+
T Consensus        77 ~a~g~~i~~lD~D~~~~~~~l~~~~~~~-~~~~~v~g~~~  115 (182)
T cd06420          77 AAKGDYLIFIDGDCIPHPDFIADHIELA-EPGVFLSGSRV  115 (182)
T ss_pred             HhcCCEEEEEcCCcccCHHHHHHHHHHh-CCCcEEeccee
Confidence            9999999999999999999999999988 33344444443

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=99.71  E-value=1.5e-16  Score=141.19  Aligned_cols=155  Identities=14%  Similarity=0.200  Sum_probs=108.0

Q ss_pred             HHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCC-CeEeeeeeecccCCCcc
Q psy8674           8 DYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQTWE   86 (439)
Q Consensus         8 ~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~~~~   86 (439)
                      ++++++..++.++.+++|.|++.|+|.|++.|+|+||+|+|+|+.+.++++..++..+...+ ..++.+...........
T Consensus        43 ~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~  122 (202)
T cd06433          43 DIIKKYEDKITYWISEPDKGIYDAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV  122 (202)
T ss_pred             HHHHHhHhhcEEEEecCCcCHHHHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc
Confidence            33444332344555689999999999999999999999999999999999999996665554 44554443332221110


Q ss_pred             cccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHH
Q psy8674          87 FRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSF  166 (439)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~  166 (439)
                      ...           . .    . ....         .........+.++++++||++|+++|+|++.+..  +||.||++
T Consensus       123 ~~~-----------~-~----~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~D~~~~~  174 (202)
T cd06433         123 IGR-----------R-R----P-PPFL---------DKFLLYGMPICHQATFFRRSLFEKYGGFDESYRI--AADYDLLL  174 (202)
T ss_pred             ccC-----------C-C----C-cchh---------hhHHhhcCcccCcceEEEHHHHHHhCCCchhhCc--hhhHHHHH
Confidence            000           0 0    0 0000         0001112244567889999999999999999853  48999999


Q ss_pred             HHHHhCCcEEEecccceecccccc
Q psy8674         167 KIWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       167 Rl~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      |+++.|+++.+.|...++|..+..
T Consensus       175 r~~~~g~~~~~~~~~~~~~~~~~~  198 (202)
T cd06433         175 RLLLAGKIFKYLPEVLAAFRLGGV  198 (202)
T ss_pred             HHHHcCCceEecchhhhhheecCC
Confidence            999999999999999998887654

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=99.71  E-value=1.4e-17  Score=151.49  Aligned_cols=125  Identities=26%  Similarity=0.378  Sum_probs=92.3

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCC-cEEEEEcCCCCC---HHH
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREG---LIR  344 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~v~~i~~~~~~g---~~~  344 (439)
                      |.||||||+||+. +.|.++|+|+++|+++.+  ||+||||+|++++.+ .++++.+.++. +++++..+.+.|   ++.
T Consensus         1 P~v~Vvip~~~~~-~~l~~~l~sl~~~~~~~~--~v~vvd~~~~~~~~~-~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~   76 (228)
T PF13641_consen    1 PRVSVVIPAYNED-DVLRRCLESLLAQDYPRL--EVVVVDDGSDDETAE-ILRALAARYPRVRVRVIRRPRNPGPGGKAR   76 (228)
T ss_dssp             --EEEE--BSS-H-HHHHHHHHHHTTSHHHTE--EEEEEEE-SSS-GCT-THHHHHHTTGG-GEEEEE----HHHHHHHH
T ss_pred             CEEEEEEEecCCH-HHHHHHHHHHHcCCCCCe--EEEEEECCCChHHHH-HHHHHHHHcCCCceEEeecCCCCCcchHHH
Confidence            6799999999999 999999999999998766  999999999999876 88888877764 578887777654   788


Q ss_pred             HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCC
Q psy8674         345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQ  397 (439)
Q Consensus       345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~  397 (439)
                      ++|.|++.+++|+|+|+|+|+.++|+||..+++.+.++...+|.+.+...+.+
T Consensus        77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~  129 (228)
T PF13641_consen   77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR  129 (228)
T ss_dssp             HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC
T ss_pred             HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC
Confidence            99999999999999999999999999999999999777777777666444433

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=99.71  E-value=6.4e-17  Score=146.56  Aligned_cols=165  Identities=20%  Similarity=0.161  Sum_probs=113.1

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +.+.++++.++.+ +++++.+++|.|.++|+|.|++.|+|+||+|||+|+.++|+||+.+++.+..++..++.+......
T Consensus        41 t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~  119 (224)
T cd06442          41 TAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEG  119 (224)
T ss_pred             hHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecC
Confidence            4566777877776 889999999999999999999999999999999999999999999999976655555544322111


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhC-CCCCCCCCccch
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG-GYDPGLLVWGGE  160 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG-gfde~~~~~~~E  160 (439)
                      . ..               ..|............ ......  .........|+++++||++|+++| ++++..+   .+
T Consensus       120 ~-~~---------------~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~r~~~~~ig~~~~~~~~---~~  177 (224)
T cd06442         120 G-GV---------------EGWGLKRKLISRGAN-LLARLL--LGRKVSDPTSGFRAYRREVLEKLIDSLVSKGY---KF  177 (224)
T ss_pred             C-cc---------------CCCcHHHHHHHHHHH-HHHHHH--cCCCCCCCCCccchhhHHHHHHHhhhccCCCc---EE
Confidence            0 00               001100000000000 000000  011233456888999999999998 5554332   26


Q ss_pred             hhHHHHHHHHhCCcEEEecccceeccccc
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSLIRP  189 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~  189 (439)
                      |+||++|++++|+++.+.|.+.+.|....
T Consensus       178 ~~~l~~~~~~~g~~i~~~p~~~~~~~~g~  206 (224)
T cd06442         178 QLELLVRARRLGYRIVEVPITFVDREHGE  206 (224)
T ss_pred             eHHHHHHHHHcCCeEEEeCeEEeccCCCc
Confidence            89999999999999999999888776543

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

Probab=99.70  E-value=1.5e-16  Score=144.75  Aligned_cols=111  Identities=21%  Similarity=0.239  Sum_probs=94.6

Q ss_pred             ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHH
Q psy8674         270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG  349 (439)
Q Consensus       270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g  349 (439)
                      +||||||+||++ +.|.+||+|+..|+   .  |||||||||+|+|.+ +++++      +++++.. .+.|.+.++|.|
T Consensus         1 ~isvii~~~Ne~-~~l~~~l~sl~~~~---~--eiivvD~gStD~t~~-i~~~~------~~~v~~~-~~~g~~~~~n~~   66 (229)
T cd02511           1 TLSVVIITKNEE-RNIERCLESVKWAV---D--EIIVVDSGSTDRTVE-IAKEY------GAKVYQR-WWDGFGAQRNFA   66 (229)
T ss_pred             CEEEEEEeCCcH-HHHHHHHHHHhccc---C--EEEEEeCCCCccHHH-HHHHc------CCEEEEC-CCCChHHHHHHH
Confidence            489999999999 99999999998774   2  999999999999877 66642      4777766 889999999999


Q ss_pred             HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeee
Q psy8674         350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGI  394 (439)
Q Consensus       350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~  394 (439)
                      +..|+++||+++|+|+.+++++++.+++.+..++. ....+.....
T Consensus        67 ~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  112 (229)
T cd02511          67 LELATNDWVLSLDADERLTPELADEILALLATDDYDGYYVPRRNFF  112 (229)
T ss_pred             HHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEEEEEEEEEE
Confidence            99999999999999999999999999999988764 3444444333

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

Probab=99.69  E-value=2.1e-16  Score=142.79  Aligned_cols=111  Identities=24%  Similarity=0.357  Sum_probs=93.7

Q ss_pred             eEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         271 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       271 vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      ||||||+||++ +.|.+||+|+.+|+++.+  |||||||+|+|++.+ ++++      ..+.++.  .+.|.+.++|.|+
T Consensus         1 vsvii~~~n~~-~~l~~~l~sl~~q~~~~~--evivvdd~s~d~~~~-~~~~------~~~~~~~--~~~g~~~a~n~g~   68 (221)
T cd02522           1 LSIIIPTLNEA-ENLPRLLASLRRLNPLPL--EIIVVDGGSTDGTVA-IARS------AGVVVIS--SPKGRARQMNAGA   68 (221)
T ss_pred             CEEEEEccCcH-HHHHHHHHHHHhccCCCc--EEEEEeCCCCccHHH-HHhc------CCeEEEe--CCcCHHHHHHHHH
Confidence            69999999999 899999999999998666  999999999999876 5544      2466664  4578999999999


Q ss_pred             hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeee
Q psy8674         351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG  393 (439)
Q Consensus       351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~  393 (439)
                      ..+++++++++|+|+.++++|+++++..+......++++....
T Consensus        69 ~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  111 (221)
T cd02522          69 AAARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRF  111 (221)
T ss_pred             HhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeee
Confidence            9999999999999999999999999888877666555544433

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=99.69  E-value=7.2e-17  Score=160.48  Aligned_cols=174  Identities=16%  Similarity=0.140  Sum_probs=115.3

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeE-eeeeeecc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM-TVPVIDGI   80 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~-v~~~~~~~   80 (439)
                      +.+.++++.++++ +++++..++|.|.++|+|.|++.|+||||+++|+|+.++|++|+.+++.+.+++... +++.... 
T Consensus        94 T~~il~~~~~~~~-~v~v~~~~~~~Gka~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~-  171 (439)
T TIGR03111        94 SFQVFCRAQNEFP-GLSLRYMNSDQGKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILT-  171 (439)
T ss_pred             HHHHHHHHHHhCC-CeEEEEeCCCCCHHHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEec-
Confidence            4455666777776 888888888999999999999999999999999999999999999999998776543 3333221 


Q ss_pred             cCCCcccccccCCCCccccccccccc-cccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccc
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGML-YKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGG  159 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~  159 (439)
                      ..+.....         .+.+.+... .............+............+|+++++||++++++||||+...   +
T Consensus       172 ~~~~~~~~---------~~~~~~~~~~~~~~~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~~~i---~  239 (439)
T TIGR03111       172 DKELIEKT---------KGRFLKLIRRCEYFEYAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNSETV---G  239 (439)
T ss_pred             Cchhhhhh---------cchhhhHhHHhHHHHHHHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCCCCc---C
Confidence            11110000         000000000 0000000000000000011112234578889999999999999998763   4


Q ss_pred             hhhHHHHHHHH-hCCcEEEecccceeccccc
Q psy8674         160 ENFELSFKIWM-CGGSIEWVPCSRIVSLIRP  189 (439)
Q Consensus       160 ED~Dl~~Rl~~-~G~~i~~~p~~~v~H~~~~  189 (439)
                      ||.|+++|++. .|+++.++|++.++|.+..
T Consensus       240 ED~~l~~rl~~~~g~kv~~~~~a~~~~~~p~  270 (439)
T TIGR03111       240 EDTDMTFQIRELLDGKVYLCENAIFYVDPID  270 (439)
T ss_pred             ccHHHHHHHHHhcCCeEEECCCCEEEEECCc
Confidence            99999999975 5999999999999997633

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional

Probab=99.68  E-value=3.6e-16  Score=162.82  Aligned_cols=118  Identities=14%  Similarity=0.132  Sum_probs=98.0

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC-CCHHH
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-EGLIR  344 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~-~g~~~  344 (439)
                      ...|+|||+||+|||+.+.+.+++.++++++|+...+||+||||||+|++.+ +++++      +++++..++| .|+++
T Consensus       257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~-la~~~------~v~yI~R~~n~~gKAG  329 (852)
T PRK11498        257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQ-FAQEV------GVKYIARPTHEHAKAG  329 (852)
T ss_pred             CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHH-HHHHC------CcEEEEeCCCCcchHH
Confidence            3468999999999998446788999999999986556999999999998755 54442      5888876655 56899


Q ss_pred             HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEee
Q psy8674         345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPV  390 (439)
Q Consensus       345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~  390 (439)
                      ++|.|++.++||||+++|+|+.+.+++|+.++..+.+++. ++|.+.
T Consensus       330 nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp  376 (852)
T PRK11498        330 NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTP  376 (852)
T ss_pred             HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcc
Confidence            9999999999999999999999999999999998766555 555543

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=99.67  E-value=1.7e-16  Score=155.17  Aligned_cols=165  Identities=16%  Similarity=0.185  Sum_probs=110.1

Q ss_pred             hhHHHHHHHHhcC--CcEEEEEecC----CCChhHHHHhhhhhcc-----CcEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674           2 LDKKLEDYIERFN--GKVRLIRNTE----REGLIRTRSRGAKESR-----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK   70 (439)
Q Consensus         2 ~~~~l~~~~~~~~--~~i~~i~~~~----n~G~a~arN~G~~~A~-----g~~i~flD~D~~~~~~~l~~l~~~~~~~~~   70 (439)
                      +.+.++++.+++|  +++++++.++    +.|.+.|+|.|++.|+     ||||+|+|+|+.++|+||+++++.+++++.
T Consensus        84 T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~  163 (384)
T TIGR03469        84 TADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGL  163 (384)
T ss_pred             HHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCC
Confidence            4567788877775  3799998533    2477889999999999     999999999999999999999999987766


Q ss_pred             eEeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCC
Q psy8674          71 IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGY  150 (439)
Q Consensus        71 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgf  150 (439)
                      +++++.............        ....+.+..  .. ..+..    .. ......+....|+|+++||++|+++|||
T Consensus       164 ~~vs~~~~~~~~~~~~~~--------~~~~~~~~~--~~-~~~~~----~~-~~~~~~~~~~~G~~~lirr~~~~~vGGf  227 (384)
T TIGR03469       164 DLVSLMVRLRCESFWEKL--------LIPAFVFFF--QK-LYPFR----WV-NDPRRRTAAAAGGCILIRREALERIGGI  227 (384)
T ss_pred             CEEEecccccCCCHHHHH--------HHHHHHHHH--HH-hcchh----hh-cCCCccceeecceEEEEEHHHHHHcCCH
Confidence            655433221111000000        000000000  00 00000    00 0011123456799999999999999999


Q ss_pred             CCCCCCccchhhHHHHHHHHhCCcEEEecccce
Q psy8674         151 DPGLLVWGGENFELSFKIWMCGGSIEWVPCSRI  183 (439)
Q Consensus       151 de~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v  183 (439)
                      |+..+.+ .||++|+.|++++|+++.+.+....
T Consensus       228 ~~~~~~~-~ED~~L~~r~~~~G~~v~~~~~~~~  259 (384)
T TIGR03469       228 AAIRGAL-IDDCTLAAAVKRSGGRIWLGLAART  259 (384)
T ss_pred             HHHhhCc-ccHHHHHHHHHHcCCcEEEEecCce
Confidence            9866544 4999999999999999998665443

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)

Probab=99.67  E-value=6.6e-16  Score=161.68  Aligned_cols=121  Identities=17%  Similarity=0.224  Sum_probs=100.0

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhH-------------HHHHHHHHHHcCCcEE
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADL-------------DQKLEDYIQRFNGKVR  332 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~-------------~~~~~~~~~~~~~~v~  332 (439)
                      ...|+|||+||+|||+.+.+++|+.++.+++|+...+||+||||||+|+|.             .+.+++++++.  +++
T Consensus       128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~--~v~  205 (713)
T TIGR03030       128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL--GVN  205 (713)
T ss_pred             ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc--CcE
Confidence            456899999999999834557899999999999545599999999999872             23566666664  588


Q ss_pred             EEEcCCC-CCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEE
Q psy8674         333 LIRNTER-EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTV  388 (439)
Q Consensus       333 ~i~~~~~-~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~  388 (439)
                      ++..++| .++++++|.|++.++|||++++|+|+.+.+++|++++..+.+++. ++|.
T Consensus       206 yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vq  263 (713)
T TIGR03030       206 YITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQ  263 (713)
T ss_pred             EEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEe
Confidence            8877776 468999999999999999999999999999999999999976665 4443

Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=99.67  E-value=4.3e-16  Score=143.06  Aligned_cols=165  Identities=14%  Similarity=0.083  Sum_probs=114.1

Q ss_pred             hhHHHHHHHHhcC-CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674           2 LDKKLEDYIERFN-GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI   80 (439)
Q Consensus         2 ~~~~l~~~~~~~~-~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~   80 (439)
                      +.+.++++.++++ .+++++.+++|.|+++|+|.|++.|+|+||+|+|+|+.++|++|+.+++.+.+++.+++.+.....
T Consensus        54 t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~  133 (243)
T PLN02726         54 TQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVK  133 (243)
T ss_pred             HHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccC
Confidence            4566777777665 579999999999999999999999999999999999999999999999999876666665432211


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      ....              .+..+..     .+.....................|+++++||++++++|.+.+... + ..
T Consensus       134 ~~~~--------------~~~~~~r-----~~~~~~~~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i~~~~~~~~-~-~~  192 (243)
T PLN02726        134 GGGV--------------HGWDLRR-----KLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDLVSSVVSKG-Y-VF  192 (243)
T ss_pred             CCCc--------------CCccHHH-----HHHHHHHHHHHHHHhCCCCCcCCCcccceeHHHHHHHHhhccCCC-c-EE
Confidence            1000              0000000     000000000000000113334578899999999999987655432 2 36


Q ss_pred             hhHHHHHHHHhCCcEEEecccceeccc
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSLI  187 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~  187 (439)
                      |+||++|+..+|+++..+|...+.|..
T Consensus       193 ~~el~~~~~~~g~~i~~vp~~~~~r~~  219 (243)
T PLN02726        193 QMEIIVRASRKGYRIEEVPITFVDRVY  219 (243)
T ss_pred             ehHHHHHHHHcCCcEEEeCcEEeCCCC
Confidence            899999999999999999988877664

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.66  E-value=6.8e-16  Score=132.56  Aligned_cols=109  Identities=28%  Similarity=0.413  Sum_probs=95.0

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE  352 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~  352 (439)
                      ||||+||+. +.|.++|+|+.+|+++..  |||||||||++++.+ .++++.    .+++++..+.+.|.+.++|.|++.
T Consensus         1 vii~~~~~~-~~l~~~l~sl~~~~~~~~--~iiivdd~s~~~~~~-~~~~~~----~~~~~~~~~~~~g~~~a~n~~~~~   72 (166)
T cd04186           1 IIIVNYNSL-EYLKACLDSLLAQTYPDF--EVIVVDNASTDGSVE-LLRELF----PEVRLIRNGENLGFGAGNNQGIRE   72 (166)
T ss_pred             CEEEecCCH-HHHHHHHHHHHhccCCCe--EEEEEECCCCchHHH-HHHHhC----CCeEEEecCCCcChHHHhhHHHhh
Confidence            699999998 999999999999988666  999999999998866 555432    258888888999999999999999


Q ss_pred             cCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEe
Q psy8674         353 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVP  389 (439)
Q Consensus       353 a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~  389 (439)
                      +++++++|+|+|+.++++++..+++.+...+. .++.+
T Consensus        73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~  110 (166)
T cd04186          73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGP  110 (166)
T ss_pred             CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEc
Confidence            99999999999999999999999998877665 44444

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=99.66  E-value=2.6e-16  Score=153.45  Aligned_cols=167  Identities=15%  Similarity=0.153  Sum_probs=109.2

Q ss_pred             hhHHHHHHHHhcC-CcEEEEEecCCCChh---HHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674           2 LDKKLEDYIERFN-GKVRLIRNTEREGLI---RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI   77 (439)
Q Consensus         2 ~~~~l~~~~~~~~-~~i~~i~~~~n~G~a---~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~   77 (439)
                      +.+.++++.+++| .+|+++..+++.|..   .+.+.++++|+||+|+|+|+|+.++|+||+.+++.+++....++++..
T Consensus        84 t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~  163 (373)
T TIGR03472        84 ALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLY  163 (373)
T ss_pred             HHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccc
Confidence            3567888888887 358888877777753   345557899999999999999999999999999999754445554321


Q ss_pred             ecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674          78 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW  157 (439)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~  157 (439)
                      ......++            ...+... .......+.......   .  .......|++|++||++|+++|||++-....
T Consensus       164 ~~~~~~~~------------~~~l~~~-~~~~~~~~~~~~~~~---~--~~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~  225 (373)
T TIGR03472       164 RGRPVPGF------------WSRLGAM-GINHNFLPSVMVARA---L--GRARFCFGATMALRRATLEAIGGLAALAHHL  225 (373)
T ss_pred             cCCCCCCH------------HHHHHHH-HhhhhhhHHHHHHHh---c--cCCccccChhhheeHHHHHHcCChHHhcccc
Confidence            11111110            0000000 000001111000000   0  0112356899999999999999999754433


Q ss_pred             cchhhHHHHHHHHhCCcEEEecccceeccc
Q psy8674         158 GGENFELSFKIWMCGGSIEWVPCSRIVSLI  187 (439)
Q Consensus       158 ~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~  187 (439)
                       .||++|+.|+.++|+++.+.|....++..
T Consensus       226 -~ED~~l~~~i~~~G~~v~~~~~~v~~~~~  254 (373)
T TIGR03472       226 -ADDYWLGELVRALGLRVVLAPVVVDTDVH  254 (373)
T ss_pred             -hHHHHHHHHHHHcCCeEEecchhhhcCCC
Confidence             49999999999999999999987555554

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=1.2e-15  Score=152.56  Aligned_cols=122  Identities=29%  Similarity=0.369  Sum_probs=108.5

Q ss_pred             CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc-CCCCCHHHHH
Q psy8674         268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN-TEREGLIRTR  346 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~-~~~~g~~~a~  346 (439)
                      .|++||+||+|||+.+.+++++.|+.+|+|+.+  ||+||||+|+|++.+ ++++...+++++++++.. .++.|+++|.
T Consensus        53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~--evivv~d~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~gK~~al  129 (439)
T COG1215          53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRY--EVIVVDDGSTDETYE-ILEELGAEYGPNFRVIYPEKKNGGKAGAL  129 (439)
T ss_pred             CCceEEEEecCCCchhhHHHHHHHHHhCCCCCc--eEEEECCCCChhHHH-HHHHHHhhcCcceEEEeccccCccchHHH
Confidence            589999999999994499999999999999987  999999999999988 999888887446676644 5788999999


Q ss_pred             HHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674         347 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID  392 (439)
Q Consensus       347 n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~  392 (439)
                      |.|+..+++|+|+++|+|..+++++|.+++..+.+++.++++....
T Consensus       130 ~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~  175 (439)
T COG1215         130 NNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPR  175 (439)
T ss_pred             HHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCce
Confidence            9999999999999999999999999999999999988876664443

>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.64  E-value=1.5e-15  Score=136.34  Aligned_cols=107  Identities=33%  Similarity=0.389  Sum_probs=94.9

Q ss_pred             CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHH
Q psy8674         268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRS  347 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n  347 (439)
                      +|++|||||+||++ ..|.++|+|+.+|++.++  |||||||||+|+|.+ ++.++.... ..+.......+.|.+.++|
T Consensus         2 ~~~~siiip~~n~~-~~l~~~l~s~~~q~~~~~--eiivvddgs~d~t~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~~~   76 (291)
T COG0463           2 MPKVSVVIPTYNEE-EYLPEALESLLNQTYKDF--EIIVVDDGSTDGTTE-IAIEYGAKD-VRVIRLINERNGGLGAARN   76 (291)
T ss_pred             CccEEEEEeccchh-hhHHHHHHHHHhhhhcce--EEEEEeCCCCCChHH-HHHHHhhhc-ceEEEeecccCCChHHHHH
Confidence            57999999999999 999999999999999876  999999999999988 888887654 2466666789999999999


Q ss_pred             HHHhhcCCCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674         348 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY  380 (439)
Q Consensus       348 ~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~  380 (439)
                      .|+..+.+++++++|+|+. .+..+..++....
T Consensus        77 ~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~~  108 (291)
T COG0463          77 AGLEYARGDYIVFLDADDQ-HPPELIPLVAAGG  108 (291)
T ss_pred             hhHHhccCCEEEEEccCCC-CCHHHHHHHHHhh
Confidence            9999999999999999999 9888888555554

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

Probab=99.63  E-value=2.6e-15  Score=135.64  Aligned_cols=136  Identities=20%  Similarity=0.237  Sum_probs=92.5

Q ss_pred             cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCCCC
Q psy8674          16 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDH   95 (439)
Q Consensus        16 ~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   95 (439)
                      +++++.  .+.|.+.|+|.|+..|+|++|+|+|+|+.++|+|++.++..+......++.......+.... ..       
T Consensus        50 ~~~~~~--~~~g~~~a~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-------  119 (221)
T cd02522          50 GVVVIS--SPKGRARQMNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRFDDPGPR-LR-------  119 (221)
T ss_pred             CeEEEe--CCcCHHHHHHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeeecCCccc-hh-------
Confidence            466654  46789999999999999999999999999999999999877765554443322222111110 00       


Q ss_pred             ccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCCcE
Q psy8674          96 HYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSI  175 (439)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~~i  175 (439)
                        .....+....                 ..... ...++++++||++|+++||||+.+  + +||+||++|++++|+++
T Consensus       120 --~~~~~~~~~~-----------------~~~~~-~~~~~~~~~r~~~~~~~G~fd~~~--~-~ED~d~~~r~~~~G~~~  176 (221)
T cd02522         120 --LLELGANLRS-----------------RLFGL-PYGDQGLFIRRELFEELGGFPELP--L-MEDVELVRRLRRRGRPA  176 (221)
T ss_pred             --hhhhccccee-----------------cccCC-CcCCceEEEEHHHHHHhCCCCccc--c-ccHHHHHHHHHhCCCEE
Confidence              0000000000                 00111 123458999999999999999998  3 49999999999999998


Q ss_pred             EEecccceec
Q psy8674         176 EWVPCSRIVS  185 (439)
Q Consensus       176 ~~~p~~~v~H  185 (439)
                      .+ |...+.+
T Consensus       177 ~~-~~~~~~~  185 (221)
T cd02522         177 LL-PSPVTTS  185 (221)
T ss_pred             Ec-Cceeeec
Confidence            77 6554443

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>COG1216 Predicted glycosyltransferases [General function prediction only]

Probab=99.62  E-value=3e-15  Score=141.98  Aligned_cols=121  Identities=30%  Similarity=0.407  Sum_probs=104.2

Q ss_pred             CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHH
Q psy8674         268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRS  347 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n  347 (439)
                      +|++++||++||.. +.+.+||.++.+|+++..  ++++|||+|+|++.+ .++...  + ++++++.+.+|.|.+++.|
T Consensus         2 ~~~i~~iiv~yn~~-~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~-~~~~~~--~-~~v~~i~~~~NlG~agg~n   74 (305)
T COG1216           2 MPKISIIIVTYNRG-EDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLE-ALKARF--F-PNVRLIENGENLGFAGGFN   74 (305)
T ss_pred             CcceEEEEEecCCH-HHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHH-HHHhhc--C-CcEEEEEcCCCccchhhhh
Confidence            57899999999999 999999999999999876  777899999999877 554422  3 3899999999999999999


Q ss_pred             HHHhhcCCC---EEEEEcCCCccCCCChHHHHHhhhcCCCEE-EEeeeeeec
Q psy8674         348 RGAKESRGE---VIVFLDAHCEVGLNWLPPLLAPIYSDRKIM-TVPVIDGID  395 (439)
Q Consensus       348 ~g~~~a~~d---~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~-v~~~~~~~~  395 (439)
                      .|++.|.++   |+++||+|+.+.+++|++|++.++..+... +.|.+...+
T Consensus        75 ~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~  126 (305)
T COG1216          75 RGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYD  126 (305)
T ss_pred             HHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCC
Confidence            999998765   999999999999999999999999987754 445554443

>PRK10018 putative glycosyl transferase; Provisional

Probab=99.62  E-value=5.5e-15  Score=137.32  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=104.8

Q ss_pred             HHHHHHHHhcC-CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC-eEeeeeeeccc
Q psy8674           4 KKLEDYIERFN-GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGID   81 (439)
Q Consensus         4 ~~l~~~~~~~~-~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~   81 (439)
                      +.++++++++. ++|++++++.|.|.++|+|.|++.|+|+||+|||+|+.+.|++|+.+++.+.+... .++.+.. ...
T Consensus        48 ~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~-~~~  126 (279)
T PRK10018         48 EQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYAND-YVC  126 (279)
T ss_pred             HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccc-eee
Confidence            56788887643 59999999999999999999999999999999999999999999999999876332 2332211 111


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN  161 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED  161 (439)
                      .+.. .    +...    .  .. .+.........          +....+.|+..++++..+. .|+|||.+.  .+||
T Consensus       127 ~~~~-~----~~~~----~--~~-~~p~~~~~~~~----------~~~~n~ig~~~~~~~~~~~-~~~fd~~~~--~~eD  181 (279)
T PRK10018        127 QGEV-Y----SQPA----S--LP-LYPKSPYSRRL----------FYKRNIIGNQVFTWAWRFK-ECLFDTELK--AAQD  181 (279)
T ss_pred             cCcc-c----cccc----c--cC-CCCCCCCCHHH----------HHHhcCcCceeeehhhhhh-hcccCCCCC--cccc
Confidence            1000 0    0000    0  00 00000000000          0011234555566666665 567999985  3599


Q ss_pred             hHHHHHHHHhCCcEEEeccc-ceeccccc
Q psy8674         162 FELSFKIWMCGGSIEWVPCS-RIVSLIRP  189 (439)
Q Consensus       162 ~Dl~~Rl~~~G~~i~~~p~~-~v~H~~~~  189 (439)
                      +||++|+...|+.++.+|++ .++|+.+.
T Consensus       182 ydlwlrl~~~~~~~~~~~~~l~~y~~~~~  210 (279)
T PRK10018        182 YDIFLRMVVEYGEPWKVEEATQILHINHG  210 (279)
T ss_pred             HHHHHHHHHhcCceEeeccceEEEEcCCC
Confidence            99999999999999999887 44666433

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional

Probab=99.62  E-value=1.9e-15  Score=157.46  Aligned_cols=165  Identities=13%  Similarity=0.172  Sum_probs=110.3

Q ss_pred             hHHHHHHHHhcCCcEEEEEecCCC-ChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEee-eeeecc
Q psy8674           3 DKKLEDYIERFNGKVRLIRNTERE-GLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGI   80 (439)
Q Consensus         3 ~~~l~~~~~~~~~~i~~i~~~~n~-G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~-~~~~~~   80 (439)
                      .+.+.+++++.  ++++++.++|. |.++++|.|++.|+||||+++|+|+++.+++|+.++..+.+++...++ +.....
T Consensus       303 ~D~t~~la~~~--~v~yI~R~~n~~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~  380 (852)
T PRK11498        303 REEFRQFAQEV--GVKYIARPTHEHAKAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFF  380 (852)
T ss_pred             ChHHHHHHHHC--CcEEEEeCCCCcchHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceecc
Confidence            34567777776  49999877655 579999999999999999999999999999999999998777765443 222222


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      +.+.+....         +.+.. .......+. ....   ..........+.|+|+++||++|+++||||++.  . .|
T Consensus       381 n~dp~~rnl---------~~~~~-~~~e~~~fy-~~iq---~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~t--i-tE  443 (852)
T PRK11498        381 SPDPFERNL---------GRFRK-TPNEGTLFY-GLVQ---DGNDMWDATFFCGSCAVIRRKPLDEIGGIAVET--V-TE  443 (852)
T ss_pred             CCchHHHhh---------HHHhh-cccchhHHH-HHHH---hHHHhhcccccccceeeeEHHHHHHhcCCCCCc--c-Cc
Confidence            111110000         00000 000000000 0000   000112234567999999999999999999985  2 49


Q ss_pred             hhHHHHHHHHhCCcEEEecccceecc
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSL  186 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~  186 (439)
                      |.|+++|+.++||++.|.|+..+...
T Consensus       444 D~dlslRL~~~Gyrv~yl~~~~a~gl  469 (852)
T PRK11498        444 DAHTSLRLHRRGYTSAYMRIPQAAGL  469 (852)
T ss_pred             cHHHHHHHHHcCCEEEEEeccceeEE
Confidence            99999999999999999987766654

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.62  E-value=5.6e-15  Score=132.64  Aligned_cols=166  Identities=15%  Similarity=0.067  Sum_probs=114.2

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCe-Eeeeeeecc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGI   80 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~-~v~~~~~~~   80 (439)
                      +.+.++++.++++..++++.+++|.|.++++|.|+..|+|+||+|+|+|+.+.|++|+.+++.+..++.. ++.+.....
T Consensus        41 t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  120 (214)
T cd04196          41 TVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELV  120 (214)
T ss_pred             cHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEE
Confidence            5677888888876678899999999999999999999999999999999999999999999996655543 443332222


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      +.+......          .......... .....         .......+.|+++++||++++++|+|++.+.  ..|
T Consensus       121 ~~~~~~~~~----------~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~  178 (214)
T cd04196         121 DENGNPIGE----------SFFEYQKIKP-GTSFN---------NLLFQNVVTGCTMAFNRELLELALPFPDADV--IMH  178 (214)
T ss_pred             CCCCCCccc----------ccccccccCC-ccCHH---------HHHHhCccCCceeeEEHHHHHhhcccccccc--ccc
Confidence            211100000          0000000000 00000         0111234568899999999999999999852  249


Q ss_pred             hhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      |.++.+++.. |+++.+.|...+.|..+..
T Consensus       179 D~~~~~~~~~-~~~~~~~~~~~~~~r~~~~  207 (214)
T cd04196         179 DWWLALLASA-FGKVVFLDEPLILYRQHGN  207 (214)
T ss_pred             hHHHHHHHHH-cCceEEcchhHHHHhcccc
Confidence            9999998877 7789999988886665444

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=99.61  E-value=5.3e-15  Score=135.17  Aligned_cols=110  Identities=18%  Similarity=0.215  Sum_probs=89.3

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE  352 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~  352 (439)
                      +|||+||++.+.|.+||+|+.+|   ..  |||||||+|+|.+.. ..+ +  . ..+++++..+.|.|.+.|+|.|++.
T Consensus         1 ~vI~~yn~~~~~l~~~l~sl~~q---~~--~iivvDn~s~~~~~~-~~~-~--~-~~~i~~i~~~~n~G~~~a~N~g~~~   70 (237)
T cd02526           1 AVVVTYNPDLSKLKELLAALAEQ---VD--KVVVVDNSSGNDIEL-RLR-L--N-SEKIELIHLGENLGIAKALNIGIKA   70 (237)
T ss_pred             CEEEEecCCHHHHHHHHHHHhcc---CC--EEEEEeCCCCccHHH-Hhh-c--c-CCcEEEEECCCceehHHhhhHHHHH
Confidence            58999999879999999999998   34  999999999876543 322 2  1 2478999999999999999999999


Q ss_pred             cCC---CEEEEEcCCCccCCCChHHHH---HhhhcCCC-EEEEeeee
Q psy8674         353 SRG---EVIVFLDAHCEVGLNWLPPLL---APIYSDRK-IMTVPVID  392 (439)
Q Consensus       353 a~~---d~i~~ld~D~~~~~~~l~~l~---~~~~~~~~-~~v~~~~~  392 (439)
                      |++   ||++|+|+|+.++|+||+.++   ..+..++. .+++|.+.
T Consensus        71 a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  117 (237)
T cd02526          71 ALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRII  117 (237)
T ss_pred             HHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEE
Confidence            987   999999999999999999995   55554544 45556544

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=99.61  E-value=6.5e-16  Score=141.05  Aligned_cols=157  Identities=15%  Similarity=0.090  Sum_probs=105.3

Q ss_pred             CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCCC
Q psy8674          15 GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPD   94 (439)
Q Consensus        15 ~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   94 (439)
                      +.++++. .+|.|.+.|+|.|++.|+|+||+|+|+|+.++|+||+.+++.+..+...++++...........        
T Consensus        53 ~~~~v~~-~~~~g~~~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~~~--------  123 (235)
T cd06434          53 GGIFVIT-VPHPGKRRALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRDSK--------  123 (235)
T ss_pred             CcEEEEe-cCCCChHHHHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcccH--------
Confidence            3677775 7899999999999999999999999999999999999999999844445555443332221000        


Q ss_pred             CccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCC--------CCccchhhHHHH
Q psy8674          95 HHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGL--------LVWGGENFELSF  166 (439)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~--------~~~~~ED~Dl~~  166 (439)
                      ....+....     +....  ..  ............+.|+++++||++++++| |++.|        ....+||.+|+.
T Consensus       124 ~~~~~~~~~-----~~~~~--~~--~~~~~~~~~~~~~~G~~~~~rr~~l~~~~-~~~~~~~~~~~~~~~~~~eD~~l~~  193 (235)
T cd06434         124 WSFLAAEYL-----ERRNE--EI--RAAMSYDGGVPCLSGRTAAYRTEILKDFL-FLEEFTNETFMGRRLNAGDDRFLTR  193 (235)
T ss_pred             HHHHHHHHH-----HHHHH--HH--HHHHhhCCCEEEccCcHHHHHHHHHhhhh-hHHHhhhhhhcCCCCCcCchHHHHH
Confidence            000000000     00000  00  00001111234567889999999999985 44433        223469999999


Q ss_pred             HHHHhCCcEEEecccceecccccc
Q psy8674         167 KIWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       167 Rl~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      |+.+.|+++.+.|.+.++|.....
T Consensus       194 ~~~~~g~~~~~~~~~~~~~~~~~~  217 (235)
T cd06434         194 YVLSHGYKTVYQYTSEAYTETPEN  217 (235)
T ss_pred             HHHHCCCeEEEecCCeEEEEcchh
Confidence            999999999999999999874443

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=99.60  E-value=1.9e-15  Score=139.41  Aligned_cols=160  Identities=18%  Similarity=0.191  Sum_probs=111.7

Q ss_pred             hHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccC
Q psy8674           3 DKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY   82 (439)
Q Consensus         3 ~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~   82 (439)
                      .+.++++.++   +++++.+++|.|.++|+|.|++.|+||||+|+|+|+.++|+||+.+++.++++...++++.......
T Consensus        75 ~~~~~~~~~~---~v~~i~~~~~~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~  151 (251)
T cd06439          75 AEIAREYADK---GVKLLRFPERRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDG  151 (251)
T ss_pred             HHHHHHHhhC---cEEEEEcCCCCChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCC
Confidence            3444444433   4999999999999999999999999999999999999999999999999975555666665544332


Q ss_pred             CCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhh
Q psy8674          83 QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENF  162 (439)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~  162 (439)
                      ..   ..       ....+.|.+.       ......   ...........|+++++||++|+   +|++..   ..||.
T Consensus       152 ~~---~~-------~~~~~~~~~~-------~~~~~~---~~~~~~~~~~~g~~~~~rr~~~~---~~~~~~---~~eD~  205 (251)
T cd06439         152 GG---SG-------SGEGLYWKYE-------NWLKRA---ESRLGSTVGANGAIYAIRRELFR---PLPADT---INDDF  205 (251)
T ss_pred             cc---cc-------hhHHHHHHHH-------HHHHHH---HHhcCCeeeecchHHHhHHHHhc---CCCccc---chhHH
Confidence            21   00       0000111100       000000   00111223457888899999999   676654   24999


Q ss_pred             HHHHHHHHhCCcEEEecccceeccccccc
Q psy8674         163 ELSFKIWMCGGSIEWVPCSRIVSLIRPVF  191 (439)
Q Consensus       163 Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~  191 (439)
                      ++++|+..+|+++.+.|.+.++|......
T Consensus       206 ~l~~~~~~~G~~~~~~~~~~~~~~~~~~~  234 (251)
T cd06439         206 VLPLRIARQGYRVVYEPDAVAYEEVAEDG  234 (251)
T ss_pred             HHHHHHHHcCCeEEeccccEEEEeCcccH
Confidence            99999999999999999999998876554

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)

Probab=99.58  E-value=1.1e-14  Score=152.51  Aligned_cols=168  Identities=16%  Similarity=0.171  Sum_probs=112.7

Q ss_pred             HHHHHHHHhcCCcEEEEEecCCC-ChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEee-eeeeccc
Q psy8674           4 KKLEDYIERFNGKVRLIRNTERE-GLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGID   81 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~~~n~-G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~-~~~~~~~   81 (439)
                      +.++++.++.  ++++++.++|. |.+++.|.|+++|+||||+++|+|++++|++|+.++..+.+++..+.+ +.....+
T Consensus       193 ~~~~~l~~~~--~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~  270 (713)
T TIGR03030       193 EELKEFCRKL--GVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVS  270 (713)
T ss_pred             HHHHHHHHHc--CcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccC
Confidence            4566677766  59999888885 568899999999999999999999999999999999999877665332 2111111


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN  161 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED  161 (439)
                      .+.....-         +.+....... ..+.......    ........+.|+|+++||++++++|||++...   .||
T Consensus       271 p~~~~~nl---------~~~~~~~~e~-~~f~~~i~~g----~~~~~~~~~~Gs~~~iRR~al~~iGGf~~~~v---tED  333 (713)
T TIGR03030       271 PDPIERNL---------GTFRRMPNEN-ELFYGLIQDG----NDFWNAAFFCGSAAVLRREALDEIGGIAGETV---TED  333 (713)
T ss_pred             CCHHhhhh---------HHHHHhhhHH-HHHHHHHHHH----HhhhCCeeecCceeEEEHHHHHHcCCCCCCCc---CcH
Confidence            11110000         0000000000 0000000000    01112335678899999999999999998753   499


Q ss_pred             hHHHHHHHHhCCcEEEecccceecccccc
Q psy8674         162 FELSFKIWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       162 ~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      +|+++|++++||++.|.|++.+++.....
T Consensus       334 ~~l~~rL~~~G~~~~y~~~~~~~g~~p~s  362 (713)
T TIGR03030       334 AETALKLHRRGWNSAYLDRPLIAGLAPET  362 (713)
T ss_pred             HHHHHHHHHcCCeEEEeccccccccCCCC
Confidence            99999999999999999999888775544

Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=99.54  E-value=1.1e-14  Score=127.71  Aligned_cols=142  Identities=16%  Similarity=0.060  Sum_probs=97.9

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +.+.++++.++.+ .++++.+++|.|+++|+|.|++.|+|||++|+|+|+.+.|+||+.++..+...+..++.+......
T Consensus        42 ~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~  120 (185)
T cd04179          42 TAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVRG  120 (185)
T ss_pred             hHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecCC
Confidence            4567778888786 889999999999999999999999999999999999999999999999966665555544332221


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHh--CCCCCCCCCccc
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL--GGYDPGLLVWGG  159 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~i--Ggfde~~~~~~~  159 (439)
                      ...  .      .........+..            ................|+++++||++|+++  |+|+++|.    
T Consensus       121 ~~~--~------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~~~----  176 (185)
T cd04179         121 GGA--G------MPLLRRLGSRLF------------NFLIRLLLGVRISDTQSGFRLFRREVLEALLSLLESNGFE----  176 (185)
T ss_pred             Ccc--c------chHHHHHHHHHH------------HHHHHHHcCCCCcCCCCceeeeHHHHHHHHHhhccccCcc----
Confidence            110  0      000000000000            000000012334556788999999999999  78888874    


Q ss_pred             hhhHHHHHH
Q psy8674         160 ENFELSFKI  168 (439)
Q Consensus       160 ED~Dl~~Rl  168 (439)
                      .|.|+++|+
T Consensus       177 ~~~~~~~~~  185 (185)
T cd04179         177 FGLELLVGA  185 (185)
T ss_pred             eeeEeeecC
Confidence            677888773

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>PRK10073 putative glycosyl transferase; Provisional

Probab=99.54  E-value=1.8e-14  Score=137.56  Aligned_cols=169  Identities=17%  Similarity=0.132  Sum_probs=109.0

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +.+.+++|.++++ +|++++ ++|.|.++|||.|++.|+|+||+|+|+|+.+.|++++.+++.+.+++.+++.+......
T Consensus        49 t~~i~~~~~~~~~-~i~vi~-~~n~G~~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~~~~~~~  126 (328)
T PRK10073         49 SVEIAKHYAENYP-HVRLLH-QANAGVSVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQCNADWCF  126 (328)
T ss_pred             HHHHHHHHHhhCC-CEEEEE-CCCCChHHHHHHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEEccEEEE
Confidence            4577888888886 999997 67999999999999999999999999999999999999999988766555433222111


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCch-HHHhhccCCCCCccCccccceEEEEeHHHHHHhC-CCCCCCCCccc
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPE-REAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG-GYDPGLLVWGG  159 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG-gfde~~~~~~~  159 (439)
                      ..........     ........     ..+.. ....... ....  .. ...++-++||+++++.| .|++++.   .
T Consensus       127 ~~~~~~~~~~-----~~~~~~~~-----~~~~~~~~l~~~l-~~~~--~~-~~~~~~l~Rr~~l~~~~~~f~~~~~---~  189 (328)
T PRK10073        127 RDTGETWQSI-----PSDRLRST-----GVLSGPDWLRMAL-SSRR--WT-HVVWLGVYRRDFIVKNNIKFEPGLH---H  189 (328)
T ss_pred             eCCCcccccc-----cccccccc-----ceechHHHHHHHH-hhCC--CC-ccHhHHHHHHHHHHHcCCccCCCCE---e
Confidence            1110000000     00000000     00000 0000000 0000  00 11223478999999998 5777763   4


Q ss_pred             hhhHHHHHHHHhCCcEEEecccceeccccc
Q psy8674         160 ENFELSFKIWMCGGSIEWVPCSRIVSLIRP  189 (439)
Q Consensus       160 ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~  189 (439)
                      ||.++.+++...+.++.++|+...++..|.
T Consensus       190 eD~~~~~~~~~~~~~v~~~~~~ly~Yr~~~  219 (328)
T PRK10073        190 QDIPWTTEVMFNALRVRYTEQSLYKYYLHD  219 (328)
T ss_pred             ccHHHHHHHHHHCCEEEEECCCEEEEEecC
Confidence            999999999999999999998766554443

>PRK10063 putative glycosyl transferase; Provisional

Probab=99.54  E-value=1.5e-13  Score=126.16  Aligned_cols=149  Identities=11%  Similarity=0.038  Sum_probs=95.9

Q ss_pred             hHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccC
Q psy8674           3 DKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY   82 (439)
Q Consensus         3 ~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~   82 (439)
                      .+.++++..+.  +++++. .+|.|+++|+|.|++.|+|+||+|||+|+.+.|+.++.+......++..++++.......
T Consensus        48 ~~i~~~~~~~~--~i~~i~-~~~~G~~~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~  124 (248)
T PRK10063         48 REFLENLNGIF--NLRFVS-EPDNGIYDAMNKGIAMAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGDALLDFG  124 (248)
T ss_pred             HHHHHHhcccC--CEEEEE-CCCCCHHHHHHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEeeeEEEcC
Confidence            34444443322  589997 457799999999999999999999999999999987665544444444454443321111


Q ss_pred             CCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhh
Q psy8674          83 QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENF  162 (439)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~  162 (439)
                      +.....              ..      ..+.....        ... ...+.+++++|+.|. .|+||+.+..  .||+
T Consensus       125 ~~~~~~--------------~~------~~~~~~~~--------~~~-~~~~~~~~~~~~~~~-~~~fd~~~~~--~~Dy  172 (248)
T PRK10063        125 DGHKIK--------------RS------AKPGWYIY--------HSL-PASHQAIFFPVSGLK-KWRYDLQYKV--SSDY  172 (248)
T ss_pred             CCcEEE--------------Ec------cCChhHHh--------cCC-CCCCcEEEEEHHHHh-cCCCCcccch--HHhH
Confidence            100000              00      00000000        000 123446788999987 4789998852  5999


Q ss_pred             HHHHHHHHhCCcEEEecccceecc
Q psy8674         163 ELSFKIWMCGGSIEWVPCSRIVSL  186 (439)
Q Consensus       163 Dl~~Rl~~~G~~i~~~p~~~v~H~  186 (439)
                      ||.+|+..+|+++.++|.....+.
T Consensus       173 dl~lrl~~~g~~~~~v~~~l~~y~  196 (248)
T PRK10063        173 ALAARLYKAGYAFKKLNGLVSEFS  196 (248)
T ss_pred             HHHHHHHHcCCcEEEcCceeEEEe
Confidence            999999999999999998776543

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin

Probab=99.54  E-value=2.2e-14  Score=131.74  Aligned_cols=100  Identities=20%  Similarity=0.124  Sum_probs=81.1

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCc--------CCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHH-
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPA--------QYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLI-  343 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~--------~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~-  343 (439)
                      ||||+|||+...|.++|+|+++|+|+        ...+|||||||||+|                        .|.|+. 
T Consensus         1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~gk~~   56 (244)
T cd04190           1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRGKRD   56 (244)
T ss_pred             CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCcchH
Confidence            69999999636899999999999998        334599999999998                        112222 


Q ss_pred             ------HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeeecC
Q psy8674         344 ------RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGIDY  396 (439)
Q Consensus       344 ------~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~  396 (439)
                            .+.|.++..+++|||+++|+|+.+++++|..++..|..++. ++|++.+...+.
T Consensus        57 ~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~  116 (244)
T cd04190          57 SQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGK  116 (244)
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCC
Confidence                  36788888999999999999999999999999999965554 666776655544

Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=99.53  E-value=3.8e-14  Score=133.14  Aligned_cols=106  Identities=21%  Similarity=0.257  Sum_probs=87.4

Q ss_pred             EecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChh-hHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc-
Q psy8674         276 VFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKA-DLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-  353 (439)
Q Consensus       276 p~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a-  353 (439)
                      ++||++.+.|.+||+|+.+|.   .  +||||||||+++ +++    .+.+.. +++++++.++|.|.+.|+|.|++.| 
T Consensus         1 Vtyn~~~~~l~~~l~sl~~q~---~--~iiVVDN~S~~~~~~~----~~~~~~-~~i~~i~~~~N~G~a~a~N~Gi~~a~   70 (281)
T TIGR01556         1 VTFNPDLEHLGELITSLPKQV---D--RIIAVDNSPHSDQPLK----NARLRG-QKIALIHLGDNQGIAGAQNQGLDASF   70 (281)
T ss_pred             CccCccHHHHHHHHHHHHhcC---C--EEEEEECcCCCcHhHH----HHhccC-CCeEEEECCCCcchHHHHHHHHHHHH
Confidence            479985489999999999985   3  999999999764 333    333333 3799999999999999999999998 


Q ss_pred             --CCCEEEEEcCCCccCCCChHHHHHhhhcCC--CEEEEeee
Q psy8674         354 --RGEVIVFLDAHCEVGLNWLPPLLAPIYSDR--KIMTVPVI  391 (439)
Q Consensus       354 --~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~--~~~v~~~~  391 (439)
                        .+|||++||+|+.+++++|+.+++.++.++  .++++|.+
T Consensus        71 ~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  112 (281)
T TIGR01556        71 RRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRF  112 (281)
T ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeE
Confidence              689999999999999999999999998764  45555654

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=99.53  E-value=3.5e-14  Score=127.46  Aligned_cols=158  Identities=15%  Similarity=0.084  Sum_probs=103.8

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +.+.++++.++++..|+++++++|.|.++|+|.|++.|+|+||+|+|+|+.++|++++.+++.+.+++.+++.+......
T Consensus        44 t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~  123 (211)
T cd04188          44 TAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLA  123 (211)
T ss_pred             hHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccC
Confidence            45677888887774469999999999999999999999999999999999999999999999977666665554432211


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN  161 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED  161 (439)
                      ......      ....+.......        ..... . .....  ......+..+++|+++.++++..+.. .++ +|
T Consensus       124 ~~~~~~------~~~~~~~~~~~~--------~~~~~-~-~~~~~--~~d~~~g~~~~~r~~~~~~~~~~~~~-~~~-~d  183 (211)
T cd04188         124 SAAVVK------RSWLRNLLGRGF--------NFLVR-L-LLGLG--IKDTQCGFKLFTRDAARRLFPRLHLE-RWA-FD  183 (211)
T ss_pred             Cccccc------ccHHHHHHHHHH--------HHHHH-H-HcCCC--CcccccCceeEcHHHHHHHHhhhhcc-ceE-ee
Confidence            110000      000000000000        00000 0 00011  11112345789999999997543221 233 79


Q ss_pred             hHHHHHHHHhCCcEEEec
Q psy8674         162 FELSFKIWMCGGSIEWVP  179 (439)
Q Consensus       162 ~Dl~~Rl~~~G~~i~~~p  179 (439)
                      +||++|+.++|+++..+|
T Consensus       184 ~el~~r~~~~g~~~~~vp  201 (211)
T cd04188         184 VELLVLARRLGYPIEEVP  201 (211)
T ss_pred             HHHHHHHHHcCCeEEEcC
Confidence            999999999999999999

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]

Probab=99.50  E-value=2e-13  Score=127.81  Aligned_cols=116  Identities=27%  Similarity=0.436  Sum_probs=90.3

Q ss_pred             EEEEEecCCCh-----hHHHHHHHHHHhc-CCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC---CCCH
Q psy8674         272 SVILVFHNEGF-----SSLMRTVHSIIKR-TPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE---REGL  342 (439)
Q Consensus       272 siiip~~n~~~-----~~l~~~l~sl~~q-~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~---~~g~  342 (439)
                      |||||++++..     +.|..||.++..+ ..+++  ||||||+||++.+.+ .+.++.+... ...++..+.   ..|.
T Consensus         1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~--eiIvvd~~s~~~~~~-~l~~~~~~~~-~~~~i~~~~~~~~f~~   76 (281)
T PF10111_consen    1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDF--EIIVVDDGSSDEFDE-ELKKLCEKNG-FIRYIRHEDNGEPFSR   76 (281)
T ss_pred             CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCE--EEEEEECCCchhHHH-HHHHHHhccC-ceEEEEcCCCCCCcCH
Confidence            79999999871     3466678888774 34444  999999999987655 6777776644 343555543   3699


Q ss_pred             HHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHH---hhhcCCC-EEEEeee
Q psy8674         343 IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA---PIYSDRK-IMTVPVI  391 (439)
Q Consensus       343 ~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~---~~~~~~~-~~v~~~~  391 (439)
                      +.|+|.|++.|++++|+|+|+|+.++|++++.++.   .+..++. .++.|..
T Consensus        77 a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~  129 (281)
T PF10111_consen   77 AKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCL  129 (281)
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence            99999999999999999999999999999999999   6766554 5566654

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan

Probab=99.49  E-value=4.3e-13  Score=123.01  Aligned_cols=126  Identities=13%  Similarity=0.170  Sum_probs=94.2

Q ss_pred             eEEEEEecCCChhHHHHHHHHHHh----cCC-cCCcceEEEEeCCCChhhHH---HHHHHHHHHcC--CcEEEEEcCCCC
Q psy8674         271 ASVILVFHNEGFSSLMRTVHSIIK----RTP-AQYLEEIILVDDFSSKADLD---QKLEDYIQRFN--GKVRLIRNTERE  340 (439)
Q Consensus       271 vsiiip~~n~~~~~l~~~l~sl~~----q~~-~~~~~eiivvdd~s~d~t~~---~~~~~~~~~~~--~~v~~i~~~~~~  340 (439)
                      |||+||+||+++..|.++|.++.+    |.+ +.+  ||+|+||++++....   +.+.++.++++  .++++++.+++.
T Consensus         1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~--eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~   78 (254)
T cd04191           1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHF--DFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENT   78 (254)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCce--EEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCC
Confidence            699999999995568999988775    665 556  999999998764321   12233444443  368888888887


Q ss_pred             CH-HHHHHHHHhh--cCCCEEEEEcCCCccCCCChHHHHHhhhcCC-CEEEEeeeeeecCCC
Q psy8674         341 GL-IRTRSRGAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQT  398 (439)
Q Consensus       341 g~-~~a~n~g~~~--a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~~  398 (439)
                      |. ++++|.++..  +++|||+++|+|..+.|++|..++..+..++ .++|.......+.++
T Consensus        79 g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~  140 (254)
T cd04191          79 GRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAET  140 (254)
T ss_pred             CccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCC
Confidence            75 6677777765  7889999999999999999999999997544 466655555666655

Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.

>PRK14716 bacteriophage N4 adsorption protein B; Provisional

Probab=99.48  E-value=5e-13  Score=132.93  Aligned_cols=110  Identities=15%  Similarity=0.104  Sum_probs=91.2

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHH-hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC--CCCCHH
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSII-KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--EREGLI  343 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~g~~  343 (439)
                      +.|.++|+||+|||+ +.|.++|+|++ +++|+++  ||+|++|+|+|+|.+ .++++.++++ +++++..+  ...|++
T Consensus        64 ~~p~vaIlIPA~NE~-~vI~~~l~s~L~~ldY~~~--eIiVv~d~ndd~T~~-~v~~l~~~~p-~v~~vv~~~~gp~~Ka  138 (504)
T PRK14716         64 PEKRIAIFVPAWREA-DVIGRMLEHNLATLDYENY--RIFVGTYPNDPATLR-EVDRLAARYP-RVHLVIVPHDGPTSKA  138 (504)
T ss_pred             CCCceEEEEeccCch-hHHHHHHHHHHHcCCCCCe--EEEEEECCCChhHHH-HHHHHHHHCC-CeEEEEeCCCCCCCHH
Confidence            467899999999999 99999999965 5678876  999999999999987 8898888877 56654433  235699


Q ss_pred             HHHHHHHhhc------CC---CEEEEEcCCCccCCCChHHHHHhhhc
Q psy8674         344 RTRSRGAKES------RG---EVIVFLDAHCEVGLNWLPPLLAPIYS  381 (439)
Q Consensus       344 ~a~n~g~~~a------~~---d~i~~ld~D~~~~~~~l~~l~~~~~~  381 (439)
                      .++|.|++.+      +|   |+++++|+|+.++|++|..+...+.+
T Consensus       139 ~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~~  185 (504)
T PRK14716        139 DCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLPR  185 (504)
T ss_pred             HHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcCC
Confidence            9999998754      45   99999999999999999987666543

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.46  E-value=5.4e-13  Score=133.52  Aligned_cols=165  Identities=19%  Similarity=0.197  Sum_probs=113.6

Q ss_pred             hhHHHHHHHHhcCCcEEEEEe-cCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRN-TEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI   80 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~-~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~   80 (439)
                      +.+.++++.++++++++++.. .+|.|.++|.|.|+..|+||+|+++|+|++++|++|.+++..+..++..++++.....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~  177 (439)
T COG1215          98 TYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIR  177 (439)
T ss_pred             HHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceee
Confidence            456677777777457888843 5889999999999999999999999999999999999999999977766443322211


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      .....         ....+...- .     .....................+.|++.++||++++++|||++..-   .|
T Consensus       178 ~~~~~---------~~~l~~~~~-~-----~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~~~~i---~E  239 (439)
T COG1215         178 NRPDP---------SNLLGRIQA-I-----EYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGGWLEDTI---TE  239 (439)
T ss_pred             ecCCh---------hhhcchhcc-h-----hhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCCCCCCce---ec
Confidence            11000         000000000 0     000000000011111123456789999999999999999999873   49


Q ss_pred             hhHHHHHHHHhCCcEEEeccccee
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIV  184 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~  184 (439)
                      |.++++|+..+|+++.+.|++.++
T Consensus       240 D~~lt~~l~~~G~~~~~~~~~~~~  263 (439)
T COG1215         240 DADLTLRLHLRGYRVVYVPEAIVW  263 (439)
T ss_pred             cHHHHHHHHHCCCeEEEeecceEe
Confidence            999999999999999999998444

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=99.45  E-value=3.1e-13  Score=118.20  Aligned_cols=138  Identities=16%  Similarity=0.094  Sum_probs=94.0

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +.+.++++.++++ +++++.+.+|.|.++|+|.|++.|+|+|++|+|+|+.++++||+.+++.+..+ ..++.+......
T Consensus        43 t~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~v~g~~~~~~  120 (181)
T cd04187          43 TLEILRELAARDP-RVKVIRLSRNFGQQAALLAGLDHARGDAVITMDADLQDPPELIPEMLAKWEEG-YDVVYGVRKNRK  120 (181)
T ss_pred             HHHHHHHHHhhCC-CEEEEEecCCCCcHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCC-CcEEEEEecCCc
Confidence            4567778877776 89999999999999999999999999999999999999999999999996544 344443322211


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN  161 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED  161 (439)
                      ...            ......+..  .      .... .   ......+...++++++||++|+++|+|||.+..  ..+
T Consensus       121 ~~~------------~~~~~~~~~--~------~~~~-~---~~~~~~~~~~~~~~~~~r~~~~~i~~~d~~~~~--~~~  174 (181)
T cd04187         121 ESW------------LKRLTSKLF--Y------RLIN-K---LSGVDIPDNGGDFRLMDRKVVDALLLLPERHRF--LRG  174 (181)
T ss_pred             chH------------HHHHHHHHH--H------HHHH-H---HcCCCCCCCCCCEEEEcHHHHHHHHhcCCCCcc--HHH
Confidence            000            000000000  0      0000 0   011233445678899999999999999999863  366


Q ss_pred             hHHHHH
Q psy8674         162 FELSFK  167 (439)
Q Consensus       162 ~Dl~~R  167 (439)
                      .++.++
T Consensus       175 ~~~~~~  180 (181)
T cd04187         175 LIAWVG  180 (181)
T ss_pred             HHHHhc
Confidence            666543

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B

Probab=99.45  E-value=3.4e-13  Score=120.46  Aligned_cols=173  Identities=13%  Similarity=0.123  Sum_probs=91.6

Q ss_pred             HHHHHHhc--C--CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCccc-CCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674           6 LEDYIERF--N--GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVIDGI   80 (439)
Q Consensus         6 l~~~~~~~--~--~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~-~~~~l~~l~~~~~~~~~~~v~~~~~~~   80 (439)
                      +.+++++.  |  ..|.++......+.+.|.|.|++.|+++|++||+.|+.+ .++|+..+++.+++++...+.|.....
T Consensus        16 ~~~~i~~~~~~~~~~i~i~~~~~~~s~~~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~   95 (217)
T PF13712_consen   16 CLRSIKRLIGPPGELIEIDNVRNAKSMAAAYNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSK   95 (217)
T ss_dssp             HHHHHHHTT--TEEEEEEE-SSS-S-TTTHHHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEE
T ss_pred             HHHHHHhhCCCCceEEEEeccCCCcCHHHHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCC
Confidence            44555554  2  467788777779999999999999999999999999997 689999999999777776554443321


Q ss_pred             cCCCcccccccCCCCccccccccc-ccccc--CCCchHHHhhcc----CCCCCccCccccceEEEEeHHHHHHhCCCCCC
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWG-MLYKE--NELPEREAKKRK----YNSEPYKSPTHAGGLFAMDRAFFLELGGYDPG  153 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~  153 (439)
                      ....       .+..+......+. ..+..  ...+........    ....+.++.++-|++|+++|+++    +|||.
T Consensus        96 ~~~~-------~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~----~fde~  164 (217)
T PF13712_consen   96 RLPP-------NGVWWESPNKVGKVREYGRIMHGHGPNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP----RFDED  164 (217)
T ss_dssp             SS-S--------TTS---EEEEEETTEEEE----E-------------ES-SSEEEEEE-TTEEEEETTB---------S
T ss_pred             cCCC-------CCcccccccccccccccccccccccccccccccccccccCCceeEEEecceEEEEEcccC----CCCcc
Confidence            1110       0000000000000 00000  000000000000    11346677788999999999999    89999


Q ss_pred             -CCCccchhhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674         154 -LLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       154 -~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                       |+.|.+-|+|+|++++++|+++ +.+...+.|.....
T Consensus       165 ~~~gfH~Ydvd~cl~~~~~G~~v-~~~~~~~~H~s~g~  201 (217)
T PF13712_consen  165 LFTGFHFYDVDQCLEARRAGYRV-VVPPPWCIHFSGGS  201 (217)
T ss_dssp             S--SSSSHHHHHHHHHHHTT-EE-EE-----EE-S---
T ss_pred             ccCCcchHHHHHHHHHHHhCCEE-EecCceEEEcCCCC
Confidence             5566679999999999999998 44557788875443

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=99.44  E-value=4e-13  Score=115.16  Aligned_cols=129  Identities=26%  Similarity=0.353  Sum_probs=86.0

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +.+.++++.+.. .+++++++++|.|+++++|.|++.|+|+|++|+|+|+.++|+||+.+++.+++.+.+++.+......
T Consensus        41 ~~~~~~~~~~~~-~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  119 (169)
T PF00535_consen   41 TEEILEEYAESD-PNIRYIRNPENLGFSAARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYID  119 (169)
T ss_dssp             HHHHHHHHHCCS-TTEEEEEHCCCSHHHHHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEE
T ss_pred             cccccccccccc-cccccccccccccccccccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEec
Confidence            456677776633 4899999999999999999999999999999999999999999999999999977776655544433


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhC
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG  148 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG  148 (439)
                      ...........        + +    .+.......    .............++|+++||++|+++|
T Consensus       120 ~~~~~~~~~~~--------~-~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~rr~~~~~~~  169 (169)
T PF00535_consen  120 DDNRYPDRRLR--------F-S----FWNRFERKI----FNNIRFWKISFFIGSCALFRRSVFEEIG  169 (169)
T ss_dssp             CTTETEECCCT--------S-E----EEECCHCHH----HHTTHSTTSSEESSSCEEEEEHHHHHCH
T ss_pred             CCccccccccc--------h-h----hhhhhhhHH----HHhhhcCCcccccccEEEEEHHHHHhhC
Confidence            22211111000        0 0    000000000    0112233455678899999999999987

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>KOG2977|consensus

Probab=99.43  E-value=2.1e-12  Score=114.15  Aligned_cols=125  Identities=24%  Similarity=0.270  Sum_probs=95.4

Q ss_pred             CceEEEEEecCCC---hhHHHHHHHHHHhc--CCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC-CcEEEEEcCCCCCH
Q psy8674         269 PKASVILVFHNEG---FSSLMRTVHSIIKR--TPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN-GKVRLIRNTEREGL  342 (439)
Q Consensus       269 p~vsiiip~~n~~---~~~l~~~l~sl~~q--~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~v~~i~~~~~~g~  342 (439)
                      +.+|||||+||++   ...+.+|+.++...  ..+++.+|||||||||+|.|.+ ++-++..++. .+++++...+|.|+
T Consensus        67 ~~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~-~a~k~s~K~~~d~irV~~l~~nrgK  145 (323)
T KOG2977|consen   67 MYLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVE-VALKFSRKLGDDNIRVIKLKKNRGK  145 (323)
T ss_pred             ceeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHH-HHHHHHHHcCcceEEEeehhccCCC
Confidence            3799999999998   24456666666543  2345778999999999999988 8888875543 58999999999999


Q ss_pred             HHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhc-----CCCEEEEeeeeee
Q psy8674         343 IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS-----DRKIMTVPVIDGI  394 (439)
Q Consensus       343 ~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~-----~~~~~v~~~~~~~  394 (439)
                      +.|...|+-.++|++++|.|+|..-.-..++.|.+.+.+     ....++|+.....
T Consensus       146 GgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p~~r~~va~GsrahL  202 (323)
T KOG2977|consen  146 GGAVRKGMLSSRGQKILFADADGATKFADLEKLEKALNDKAGPGPRDDVACGSRAHL  202 (323)
T ss_pred             CcceehhhHhccCceEEEEcCCCCccCCCHHHHHHHHHhhcCCCCCCceeecCHHHh
Confidence            999999999999999999999988654446666665542     2235566554333

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=99.43  E-value=2.3e-13  Score=117.48  Aligned_cols=140  Identities=21%  Similarity=0.266  Sum_probs=90.0

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCe-Eeeeeeecc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGI   80 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~-~v~~~~~~~   80 (439)
                      +.+.+.++...++..+.++.+++|.|.+.|+|.|++.++|+|++|+|+|+.++|+||+.++..+.+++.. ++++.....
T Consensus        40 t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~  119 (180)
T cd06423          40 TLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVR  119 (180)
T ss_pred             hHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEe
Confidence            3455666665554467888889999999999999999999999999999999999999997777665544 444443332


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      .... ...          ..........+....      ............+.|+++++||++|+++||||+.+.  + |
T Consensus       120 ~~~~-~~~----------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~ggf~~~~~--~-e  179 (180)
T cd06423         120 NGSE-NLL----------TRLQAIEYLSIFRLG------RRAQSALGGVLVLSGAFGAFRREALREVGGWDEDTL--T-E  179 (180)
T ss_pred             cCcC-cce----------eccchheecceeeee------eehhheecceeecCchHHHHHHHHHHHhCCccccCc--C-C
Confidence            2210 000          000000000000000      000011223345688999999999999999999974  3 7


Q ss_pred             h
Q psy8674         161 N  161 (439)
Q Consensus       161 D  161 (439)
                      |
T Consensus       180 D  180 (180)
T cd06423         180 D  180 (180)
T ss_pred             C
Confidence            6

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin

Probab=99.41  E-value=7.6e-13  Score=121.51  Aligned_cols=172  Identities=15%  Similarity=0.084  Sum_probs=108.0

Q ss_pred             hHHHHHHHHhcCC----------cEEEEEe-----cCCCChhH-------HHHhhhhhccCcEEEEecCCcccCCCchHH
Q psy8674           3 DKKLEDYIERFNG----------KVRLIRN-----TEREGLIR-------TRSRGAKESRGEVIVFLDAHCEVGLNWLPP   60 (439)
Q Consensus         3 ~~~l~~~~~~~~~----------~i~~i~~-----~~n~G~a~-------arN~G~~~A~g~~i~flD~D~~~~~~~l~~   60 (439)
                      .+.|+..+++.-|          ++.+|--     +.|.|...       +.|.|+..|+||||+++|+|+.++|+||+.
T Consensus        14 ~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d~~~gk~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~   93 (244)
T cd04190          14 ARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIKKNRGKRDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQ   93 (244)
T ss_pred             HHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCcccccCcchHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHH
Confidence            4556666665333          5666551     14556543       678999999999999999999999999999


Q ss_pred             HHHHHhcCCCe-EeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEE
Q psy8674          61 LLAPIYSDRKI-MTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAM  139 (439)
Q Consensus        61 l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i  139 (439)
                      ++..|..++.. ++++......... ....       ....+.+..        .... .+........+..++|+++++
T Consensus        94 l~~~~~~~p~vg~v~g~~~~~~~~~-~~~~-------~~q~~ey~~--------~~~~-~~~~~s~~g~~~~~~G~~~~~  156 (244)
T cd04190          94 LYKAMDKDPEIGGVCGEIHPMGKKQ-GPLV-------MYQVFEYAI--------SHWL-DKAFESVFGFVTCLPGCFSMY  156 (244)
T ss_pred             HHHHHHhCCCEEEEEeeeEEcCCcc-hhHH-------HhHheehhh--------hhhh-cccHHHcCCceEECCCceEEE
Confidence            99999766654 4444433322100 0000       000000000        0000 000011112234568999999


Q ss_pred             eHHHHHHhCCCCCCC----------C-------CccchhhHHHHHHHHhCCcEEE--ecccceeccccccc
Q psy8674         140 DRAFFLELGGYDPGL----------L-------VWGGENFELSFKIWMCGGSIEW--VPCSRIVSLIRPVF  191 (439)
Q Consensus       140 rr~~f~~iGgfde~~----------~-------~~~~ED~Dl~~Rl~~~G~~i~~--~p~~~v~H~~~~~~  191 (439)
                      |+++++++|++...+          .       ..-+||.+|++|+..+|+++.+  .|++.++......+
T Consensus       157 R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~a~~~~~~p~s~  227 (244)
T cd04190         157 RIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKYLYVPGAVAETDVPETF  227 (244)
T ss_pred             EehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEEEEecccEEEEECCCCH
Confidence            999999998875421          0       0125999999999999999999  99999887765543

Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2

Probab=99.38  E-value=1.3e-12  Score=115.59  Aligned_cols=128  Identities=21%  Similarity=0.285  Sum_probs=83.5

Q ss_pred             EEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccC
Q psy8674          43 VIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKY  122 (439)
Q Consensus        43 ~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (439)
                      ||+++|+|+.++|++|+++++.++.+..+++.+.+......+.  ..       ....+.+..    ..     ...+..
T Consensus         1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~--~~-------~~~~~~~~~----~~-----~~~~~~   62 (193)
T PF13632_consen    1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSL--LT-------RLQDFEYAI----SH-----GLSRLS   62 (193)
T ss_pred             CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCCh--hh-------eeehhhhhh----hh-----hhhHHH
Confidence            6899999999999999999999993334555444433211110  00       001111100    00     000001


Q ss_pred             CCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674         123 NSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       123 ~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      .........++|+++++|+++++++|||| .....+ ||.|+++|+.++|+++.+.|++.++|...+.
T Consensus        63 ~~~~~~~~~~~G~~~~~r~~~l~~vg~~~-~~~~~~-ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t  128 (193)
T PF13632_consen   63 QSSLGRPLFLSGSGMLFRREALREVGGFD-DPFSIG-EDMDLGFRLRRAGYRIVYVPDAIVYTEAPPT  128 (193)
T ss_pred             HHhcCCCccccCcceeeeHHHHHHhCccc-cccccc-chHHHHHHHHHCCCEEEEecccceeeeCCCC
Confidence            11122334568999999999999999999 444444 9999999999999999999999887775444

>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=99.38  E-value=4.6e-12  Score=131.25  Aligned_cols=118  Identities=12%  Similarity=0.084  Sum_probs=96.7

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHH-hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC--CCCH
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSII-KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGL  342 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~g~  342 (439)
                      ...|.+||+||+|||+ ..+.+++++++ .++||++  ||+++++++++.|.+ .++++.++++ +++++..+.  +.|+
T Consensus        60 ~~~~~vsIlVPa~nE~-~vi~~~i~~ll~~ldYP~~--eI~vi~~~nD~~T~~-~~~~l~~~~p-~~~~v~~~~~g~~gK  134 (727)
T PRK11234         60 PDEKPLAIMVPAWNET-GVIGNMAELAATTLDYENY--HIFVGTYPNDPATQA-DVDAVCARFP-NVHKVVCARPGPTSK  134 (727)
T ss_pred             CCCCCEEEEEecCcch-hhHHHHHHHHHHhCCCCCe--EEEEEecCCChhHHH-HHHHHHHHCC-CcEEEEeCCCCCCCH
Confidence            4568899999999999 99999999986 6899987  999999988888777 8999988886 566554444  7899


Q ss_pred             HHHHHHHHhhc-------C--CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674         343 IRTRSRGAKES-------R--GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP  389 (439)
Q Consensus       343 ~~a~n~g~~~a-------~--~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~  389 (439)
                      +.|+|.|+..+       .  .+.+++.|+|+.++|+.|. ++..+..+...+-+|
T Consensus       135 a~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p  189 (727)
T PRK11234        135 ADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIP  189 (727)
T ss_pred             HHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeec
Confidence            99999999987       3  3568889999999999998 667776655444444

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan

Probab=99.37  E-value=3.8e-12  Score=116.77  Aligned_cols=160  Identities=16%  Similarity=0.068  Sum_probs=98.6

Q ss_pred             HHHHHhcC--CcEEEEEecCCCCh-hHHHHhhhhh--ccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEee-eeeecc
Q psy8674           7 EDYIERFN--GKVRLIRNTEREGL-IRTRSRGAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV-PVIDGI   80 (439)
Q Consensus         7 ~~~~~~~~--~~i~~i~~~~n~G~-a~arN~G~~~--A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~-~~~~~~   80 (439)
                      .+..++++  .+|++++.++|.|. +++.|.++..  +++|||+++|+|+.++|++|..++..+..++...++ +.....
T Consensus        57 ~~l~~~~~~~~~v~~~~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~  136 (254)
T cd04191          57 LDLCEELGAQGRIYYRRRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLI  136 (254)
T ss_pred             HHHHHHhCCCCcEEEEEcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeE
Confidence            33444443  58999999999887 4455555554  788999999999999999999999999877655432 222222


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCC--CCCCc-
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDP--GLLVW-  157 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde--~~~~~-  157 (439)
                      +...+-..         ...+...      .+.....  ............+.|+++++||+.|+++|+|.+  ++..| 
T Consensus       137 n~~~~~~~---------~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~  199 (254)
T cd04191         137 GAETLFAR---------LQQFANR------LYGPVFG--RGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFG  199 (254)
T ss_pred             CCCCHHHH---------HHHHHHH------HHHHHHH--HHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCC
Confidence            21111000         0000000      0000000  000000012235679999999999999766543  11111 


Q ss_pred             ---cchhhHHHHHHHHhCCcEEEecccce
Q psy8674         158 ---GGENFELSFKIWMCGGSIEWVPCSRI  183 (439)
Q Consensus       158 ---~~ED~Dl~~Rl~~~G~~i~~~p~~~v  183 (439)
                         -.||+++++++..+||++.|.|.+..
T Consensus       200 ~~~l~eD~~l~~~~~~~G~ri~~~~~~~~  228 (254)
T cd04191         200 GHILSHDFVEAALMRRAGWEVRLAPDLEG  228 (254)
T ss_pred             CCeecHHHHHHHHHHHcCCEEEEccCCcc
Confidence               25999999999999999999998754

Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=99.36  E-value=1.2e-11  Score=103.97  Aligned_cols=112  Identities=35%  Similarity=0.490  Sum_probs=92.4

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE  352 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~  352 (439)
                      ||||++|+. +.+..++.|+.++.+...  ||+|+||++++.+.+ .+.++.... ..+..+....+.|.+.++|.++..
T Consensus         1 iii~~~~~~-~~l~~~l~s~~~~~~~~~--~i~i~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~   75 (156)
T cd00761           1 VIIPAYNEE-PYLERCLESLLAQTYPNF--EVIVVDDGSTDGTLE-ILEEYAKKD-PRVIRVINEENQGLAAARNAGLKA   75 (156)
T ss_pred             CEEeecCcH-HHHHHHHHHHHhCCccce--EEEEEeCCCCccHHH-HHHHHHhcC-CCeEEEEecCCCChHHHHHHHHHH
Confidence            689999999 999999999999987655  999999999988766 666665432 246667788899999999999999


Q ss_pred             cCCCEEEEEcCCCccCCCChHHHHHhhhcCC-CEEEEe
Q psy8674         353 SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVP  389 (439)
Q Consensus       353 a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~v~~  389 (439)
                      +.+++++++|+|+.+.++++..++..+...+ ..++.+
T Consensus        76 ~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (156)
T cd00761          76 ARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG  113 (156)
T ss_pred             hcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec
Confidence            9999999999999999999999855554444 444443

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>PRK05454 glucosyltransferase MdoH; Provisional

Probab=99.34  E-value=2.6e-11  Score=125.10  Aligned_cols=132  Identities=11%  Similarity=0.095  Sum_probs=100.0

Q ss_pred             CCCCceEEEEEecCCCh----hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHH---HHHHHHHHcC--CcEEEEEc
Q psy8674         266 LDLPKASVILVFHNEGF----SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQ---KLEDYIQRFN--GKVRLIRN  336 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~----~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~---~~~~~~~~~~--~~v~~i~~  336 (439)
                      ...|+++|+||+|||+.    +.|+.+++|+.+|.+++ .+||+|+||++++++...   .+.++.++++  .++.+.+.
T Consensus       121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~-~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R  199 (691)
T PRK05454        121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGA-HFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRR  199 (691)
T ss_pred             CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCC-CEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence            45689999999999984    25889999999998764 349999999999886431   2345555553  36788776


Q ss_pred             CCCCC-HHHHHHHHHhh--cCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeeecCCC
Q psy8674         337 TEREG-LIRTRSRGAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGIDYQT  398 (439)
Q Consensus       337 ~~~~g-~~~a~n~g~~~--a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~  398 (439)
                      ..|.| ++++.|.+++.  +++||++++|+|..++++++.+++..++.++. ++|......++.++
T Consensus       200 ~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~s  265 (691)
T PRK05454        200 RRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGADT  265 (691)
T ss_pred             CcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCCC
Confidence            66654 66777777887  56799999999999999999999999985554 56655555555555

>PF13506 Glyco_transf_21: Glycosyl transferase family 21

Probab=99.29  E-value=5.8e-12  Score=108.81  Aligned_cols=143  Identities=17%  Similarity=0.276  Sum_probs=94.9

Q ss_pred             EEEEecCCCCh---hHHHHhhhhh-ccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCC
Q psy8674          18 RLIRNTEREGL---IRTRSRGAKE-SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEP   93 (439)
Q Consensus        18 ~~i~~~~n~G~---a~arN~G~~~-A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   93 (439)
                      +++-.+...|.   ....-.|+++ |++|+|+|+|+|+.++|+||..++..+++....+|.+.........+        
T Consensus         5 ~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~--------   76 (175)
T PF13506_consen    5 RLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGF--------   76 (175)
T ss_pred             EEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCH--------
Confidence            36666666665   3344456777 99999999999999999999999999997555555433222211111        


Q ss_pred             CCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCC
Q psy8674          94 DHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGG  173 (439)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~  173 (439)
                          ...+.-.+.    .........      .....+..|.+|++||+.++++|||+.=-. +-+||+.|..+++++|+
T Consensus        77 ----~~~l~~~~~----~~~~~~~~a------~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~-~ladD~~l~~~~~~~G~  141 (175)
T PF13506_consen   77 ----WSRLEAAFF----NFLPGVLQA------LGGAPFAWGGSMAFRREALEEIGGFEALAD-YLADDYALGRRLRARGY  141 (175)
T ss_pred             ----HHHHHHHHH----hHHHHHHHH------hcCCCceecceeeeEHHHHHHcccHHHHhh-hhhHHHHHHHHHHHCCC
Confidence                000000000    000000000      113456789999999999999999988211 22599999999999999


Q ss_pred             cEEEecccce
Q psy8674         174 SIEWVPCSRI  183 (439)
Q Consensus       174 ~i~~~p~~~v  183 (439)
                      ++...|...+
T Consensus       142 ~v~~~~~~v~  151 (175)
T PF13506_consen  142 RVVLSPYPVV  151 (175)
T ss_pred             eEEEcchhee
Confidence            9999997644

>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases

Probab=99.24  E-value=1.1e-11  Score=90.97  Aligned_cols=58  Identities=36%  Similarity=0.638  Sum_probs=44.9

Q ss_pred             ccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCCcEEEecccce-eccc
Q psy8674         130 PTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRI-VSLI  187 (439)
Q Consensus       130 ~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v-~H~~  187 (439)
                      +.+.|++++++|+.|.+||||||.|..||+||.||+.|+..+|.++...+...+ +|+.
T Consensus        17 ~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~~yh~~   75 (78)
T PF02709_consen   17 PNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIGRYHLW   75 (78)
T ss_dssp             TT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTTEEEEE
T ss_pred             CCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCceEEEEEe
Confidence            466899999999999999999999999999999999999999999999877777 5776

The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....

>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

Probab=99.24  E-value=7.5e-11  Score=103.36  Aligned_cols=137  Identities=19%  Similarity=0.255  Sum_probs=94.2

Q ss_pred             HHHHHHhcC--CcEEEEEecC--CCChhHHHHhhhhhcc----CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674           6 LEDYIERFN--GKVRLIRNTE--REGLIRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI   77 (439)
Q Consensus         6 l~~~~~~~~--~~i~~i~~~~--n~G~a~arN~G~~~A~----g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~   77 (439)
                      +..|+++..  -+|-||.-..  .+..|...|.|...|.    .++++|-|-|..+..+++.  ..+ .+.+..+.. .+
T Consensus        24 ~~~~L~rq~~~~~i~vi~Q~~~~~FNR~~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~--y~~-~~~p~H~s~-~~   99 (219)
T cd00899          24 LHPFLQRQQLDYRIFVIEQVGNFRFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNL--YGC-EEGPRHLSV-PL   99 (219)
T ss_pred             HHHHHHhcCCcEEEEEEEecCCccchhhhhhhHHHHHHhhcCCccEEEEecccccccCcccc--ccC-CCCCeEEEE-ee
Confidence            456776644  2566776333  3567889999998884    4789999999998887743  111 222211111 10


Q ss_pred             ecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674          78 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW  157 (439)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~  157 (439)
                      .                     .+...+                      +...+.||+++++|+.|.+|||||+.|..|
T Consensus       100 ~---------------------~~~~~l----------------------py~~~~Gg~~~~~k~~f~~VNGf~n~f~GW  136 (219)
T cd00899         100 D---------------------KFHYKL----------------------PYKTYFGGVLALTREQFRKVNGFSNAYWGW  136 (219)
T ss_pred             c---------------------cccccc----------------------CcccccccceeeEHHHHHHhCCcCCcCccC
Confidence            0                     011111                      112457899999999999999999999999


Q ss_pred             cchhhHHHHHHHHhCCcEEEecccc--eeccccc
Q psy8674         158 GGENFELSFKIWMCGGSIEWVPCSR--IVSLIRP  189 (439)
Q Consensus       158 ~~ED~Dl~~Rl~~~G~~i~~~p~~~--v~H~~~~  189 (439)
                      |+||.||+.|+..+|.++...+...  ..|++|.
T Consensus       137 GgEDdd~~~Rl~~~g~~~~r~~~~~~~~~hL~H~  170 (219)
T cd00899         137 GGEDDDLYNRIKAAGLKITRPSGDTGRYKMIRHI  170 (219)
T ss_pred             CcchHHHHHHHHHCCCeEEeccCcccceeeeecC
Confidence            9999999999999999999887654  3555553

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.

>PRK14716 bacteriophage N4 adsorption protein B; Provisional

Probab=99.23  E-value=4.7e-11  Score=118.94  Aligned_cols=160  Identities=17%  Similarity=0.136  Sum_probs=98.3

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCC--CChhHHHHhhhhhc------cC---cEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTER--EGLIRTRSRGAKES------RG---EVIVFLDAHCEVGLNWLPPLLAPIYSDRK   70 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n--~G~a~arN~G~~~A------~g---~~i~flD~D~~~~~~~l~~l~~~~~~~~~   70 (439)
                      |.+.+++..+++| +++++..+.+  .|.+.|.|.|++.+      +|   |+|+++|+|++++|++|+.+...+. +. 
T Consensus       110 T~~~v~~l~~~~p-~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~-~~-  186 (504)
T PRK14716        110 TLREVDRLAARYP-RVHLVIVPHDGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP-RH-  186 (504)
T ss_pred             HHHHHHHHHHHCC-CeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC-CC-
Confidence            5667888888887 7876664433  35788999998754      56   9999999999999999998766553 22 


Q ss_pred             eEee-eeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHh--
Q psy8674          71 IMTV-PVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL--  147 (439)
Q Consensus        71 ~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~i--  147 (439)
                      .++. +.. .......         ....+.+ +.      .+.....+...............|.++++||++++++  
T Consensus       187 ~~VQ~pv~-~~~~~~~---------~~~ag~y-~~------ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~  249 (504)
T PRK14716        187 DFVQLPVF-SLPRDWG---------EWVAGTY-MD------EFAESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAA  249 (504)
T ss_pred             CEEeccee-ccCCchh---------HHHHHHH-HH------HHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHh
Confidence            2222 221 1110000         0000000 00      0000000000000000111234688999999999998  


Q ss_pred             ---CC-CCCCCCCccchhhHHHHHHHHhCCcEEEeccccee
Q psy8674         148 ---GG-YDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIV  184 (439)
Q Consensus       148 ---Gg-fde~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~  184 (439)
                         |+ ||++.-   .||+|+++|+.++|+++.+.|.+..+
T Consensus       250 ~~GG~~fd~~sL---TED~dLglRL~~~G~rv~y~p~ai~~  287 (504)
T PRK14716        250 ERGGQPFDSDSL---TEDYDIGLRLKRAGFRQIFVRVRADD  287 (504)
T ss_pred             hcCCCCCCCCCc---chHHHHHHHHHHCCCEEEEecccccc
Confidence               43 998742   49999999999999999999988544

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=99.20  E-value=1.8e-11  Score=107.24  Aligned_cols=137  Identities=17%  Similarity=0.131  Sum_probs=81.0

Q ss_pred             HHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc-----CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc
Q psy8674           6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR-----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI   80 (439)
Q Consensus         6 l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~-----g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~   80 (439)
                      ..+.++++...+.+...++|.|.+.|+|.|++.|+     |++|+|+|+|+.++|+||..+++.+.++.. ++.+.....
T Consensus        42 t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~-~v~g~~~~~  120 (183)
T cd06438          42 TAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGAR-VVQAYYNSK  120 (183)
T ss_pred             HHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCC-eeEEEEeee
Confidence            34455555534444445678999999999998774     999999999999999999999999986543 333222221


Q ss_pred             cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      ....          .+......+...+.. .+.. ..  .   ........+.|+++++||++|++ |||++.-.   .|
T Consensus       121 ~~~~----------~~~~~~~~~~~~~~~-~~~~-~~--~---~~~~~~~~~~G~~~~~rr~~l~~-~g~~~~~l---~E  179 (183)
T cd06438         121 NPDD----------SWITRLYAFAFLVFN-RLRP-LG--R---SNLGLSCQLGGTGMCFPWAVLRQ-APWAAHSL---TE  179 (183)
T ss_pred             CCcc----------CHHHHHHHHHHHHHH-HHHH-HH--H---HHcCCCeeecCchhhhHHHHHHh-CCCCCCCc---cc
Confidence            1100          000000000000000 0000 00  0   00111224578899999999999 88987532   39


Q ss_pred             hhHH
Q psy8674         161 NFEL  164 (439)
Q Consensus       161 D~Dl  164 (439)
                      |+||
T Consensus       180 D~~~  183 (183)
T cd06438         180 DLEF  183 (183)
T ss_pred             ccCC
Confidence            9875

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=99.19  E-value=2.6e-10  Score=116.96  Aligned_cols=120  Identities=9%  Similarity=0.127  Sum_probs=91.2

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHH-hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC--CCHH
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSII-KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER--EGLI  343 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~--~g~~  343 (439)
                      ..|.+||+||+|||+ +.+.+++++++ .++||++  ||+|+....+.+|.+ .++++...+| +++++..+.+  .|++
T Consensus        69 ~~~~vsIlVPa~nE~-~VI~~~v~~ll~~ldYp~~--~I~v~~~~nD~~T~~-~~~~~~~~~p-~~~~v~~~~~gp~gKa  143 (703)
T PRK15489         69 DEQPLAIMVPAWKEY-DVIAKMIENMLATLDYRRY--VIFVGTYPNDAETIT-EVERMRRRYK-RLVRVEVPHDGPTCKA  143 (703)
T ss_pred             CCCceEEEEeCCCcH-HHHHHHHHHHHhcCCCCCe--EEEEEecCCCccHHH-HHHHHhccCC-cEEEEEcCCCCCCCHH
Confidence            456899999999999 99999999976 7799977  999953222335555 7777776666 6777766554  7899


Q ss_pred             HHHHHHHhhc-------CCCE--EEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674         344 RTRSRGAKES-------RGEV--IVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVID  392 (439)
Q Consensus       344 ~a~n~g~~~a-------~~d~--i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~  392 (439)
                      .|+|.|+..+       .+++  +++.|+|+.++|+.|..+ ..+...+..+.+|+..
T Consensus       144 ~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~~~iQ~pV~~  200 (703)
T PRK15489        144 DCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRKDLVQLPVLS  200 (703)
T ss_pred             HHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCcceeeeeecc
Confidence            9999999875       3334  899999999999999766 5555555555556554

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=99.12  E-value=6.2e-10  Score=93.38  Aligned_cols=101  Identities=31%  Similarity=0.478  Sum_probs=83.6

Q ss_pred             cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCe-EeeeeeecccCCCcccccccCCC
Q psy8674          16 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGIDYQTWEFRSVYEPD   94 (439)
Q Consensus        16 ~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~   94 (439)
                      .+..+...++.|.+.++|.|+..+++++++++|+|+.+.|++++.++..+..++.. ++.+.                  
T Consensus        53 ~~~~~~~~~~~g~~~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------  114 (156)
T cd00761          53 RVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP------------------  114 (156)
T ss_pred             CeEEEEecCCCChHHHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc------------------
Confidence            47777789999999999999999999999999999999999999986555544332 22100                  


Q ss_pred             CccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCCc
Q psy8674          95 HHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGS  174 (439)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~~  174 (439)
                                                              ++++++++.|+++|+|++..+.+ +||.+++.++...|+.
T Consensus       115 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~ed~~~~~~~~~~g~~  153 (156)
T cd00761         115 ----------------------------------------GNLLFRRELLEEIGGFDEALLSG-EEDDDFLLRLLRGGKV  153 (156)
T ss_pred             ----------------------------------------chheeeHHHHHHhCCcchHhcCC-cchHHHHHHHHhhccc
Confidence                                                    46899999999999999998754 5999999999988876


Q ss_pred             E
Q psy8674         175 I  175 (439)
Q Consensus       175 i  175 (439)
                      +
T Consensus       154 ~  154 (156)
T cd00761         154 A  154 (156)
T ss_pred             c
Confidence            4

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine

Probab=99.05  E-value=4.4e-10  Score=99.12  Aligned_cols=63  Identities=21%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             CcEEEEEec---CCCChhHHHHhhhhhcc-----------CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674          15 GKVRLIRNT---EREGLIRTRSRGAKESR-----------GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI   77 (439)
Q Consensus        15 ~~i~~i~~~---~n~G~a~arN~G~~~A~-----------g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~   77 (439)
                      +++++++..   .|.|.+.|+|.|++.++           +++|+|+|+|+.++|+||+.+...+......++.+..
T Consensus        50 ~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~  126 (191)
T cd06436          50 SRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRV  126 (191)
T ss_pred             CcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeE
Confidence            489999753   57899999999999885           3799999999999999999988877633334444433

N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional

Probab=99.03  E-value=2.6e-09  Score=102.30  Aligned_cols=159  Identities=14%  Similarity=0.080  Sum_probs=100.4

Q ss_pred             hhHHHHHHHHhc--C-CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhc---CCCeEeee
Q psy8674           2 LDKKLEDYIERF--N-GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS---DRKIMTVP   75 (439)
Q Consensus         2 ~~~~l~~~~~~~--~-~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~---~~~~~v~~   75 (439)
                      +.+.++++.+++  + .+++++.+++|.|.++|+|.|++.|+|+||+++|+|+..+++.+..+++.+.+   ++.+++++
T Consensus       121 T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~G  200 (333)
T PTZ00260        121 TLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFG  200 (333)
T ss_pred             hHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEe
Confidence            456677777764  2 46999999999999999999999999999999999999999999999999874   44455554


Q ss_pred             eeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhC--CCCCC
Q psy8674          76 VIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG--GYDPG  153 (439)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG--gfde~  153 (439)
                      .......+..  .   ......+....+...+        ..  .....  ....-...+.-+++|++++.+=  ...++
T Consensus       201 sR~~~~~~~~--~---~~~~~~r~~~~~~~~~--------l~--~~~~~--~~i~D~~~Gfk~~~r~~~~~i~~~~~~~~  263 (333)
T PTZ00260        201 SRNHLVDSDV--V---AKRKWYRNILMYGFHF--------IV--NTICG--TNLKDTQCGFKLFTRETARIIFPSLHLER  263 (333)
T ss_pred             eccccccCcc--c---ccCcHHHHHHHHHHHH--------HH--HHHcC--CCcccCCCCeEEEeHHHHHHHhhhccccC
Confidence            4322111100  0   0000010000010000        00  00000  1122223446789999998771  11223


Q ss_pred             CCCccchhhHHHHHHHHhCCcEEEeccc
Q psy8674         154 LLVWGGENFELSFKIWMCGGSIEWVPCS  181 (439)
Q Consensus       154 ~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~  181 (439)
                      +    .-|+|+.+++.+.|++|..+|-.
T Consensus       264 ~----~fd~Ell~~a~~~g~~I~EvPv~  287 (333)
T PTZ00260        264 W----AFDIEIVMIAQKLNLPIAEVPVN  287 (333)
T ss_pred             c----cchHHHHHHHHHcCCCEEEEcee
Confidence            2    25899999999999999999853

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

Probab=98.99  E-value=4.8e-09  Score=98.71  Aligned_cols=113  Identities=13%  Similarity=0.210  Sum_probs=86.4

Q ss_pred             eEEEEEecCCChhHHHHHHHHHHhc--CCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC----C-----
Q psy8674         271 ASVILVFHNEGFSSLMRTVHSIIKR--TPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE----R-----  339 (439)
Q Consensus       271 vsiiip~~n~~~~~l~~~l~sl~~q--~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~----~-----  339 (439)
                      +.|||.+||+. +.|.+||+||++|  ....+  +|||++||+.+++.+ .++.+.    ..++++....    +     
T Consensus         2 ~PVlv~ayNRp-~~l~r~LesLl~~~p~~~~~--~liIs~DG~~~~~~~-~v~~~~----~~i~~i~~~~~~~~~~~~~~   73 (334)
T cd02514           2 IPVLVIACNRP-DYLRRMLDSLLSYRPSAEKF--PIIVSQDGGYEEVAD-VAKSFG----DGVTHIQHPPISIKNVNPPH   73 (334)
T ss_pred             cCEEEEecCCH-HHHHHHHHHHHhccccCCCc--eEEEEeCCCchHHHH-HHHhhc----cccEEEEcccccccccCccc
Confidence            56999999999 9999999999998  44455  999999999877655 555552    2466665422    2     


Q ss_pred             -----CCHHH----HHHHHHhhcCCCEEEEEcCCCccCCCCh---HHHHHhhhcCCCEEEEeee
Q psy8674         340 -----EGLIR----TRSRGAKESRGEVIVFLDAHCEVGLNWL---PPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       340 -----~g~~~----a~n~g~~~a~~d~i~~ld~D~~~~~~~l---~~l~~~~~~~~~~~v~~~~  391 (439)
                           .+.+.    |+|.++..+.++++++|++|+.+.|+++   ++++..++.++...+++..
T Consensus        74 ~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~  137 (334)
T cd02514          74 KFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAW  137 (334)
T ss_pred             ccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEee
Confidence                 12233    8999998889999999999999999955   7778888888776555443

Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.

>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=98.96  E-value=3.9e-09  Score=109.78  Aligned_cols=157  Identities=17%  Similarity=0.141  Sum_probs=97.5

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecC--CCChhHHHHhhhhhc-------cC--cEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTE--REGLIRTRSRGAKES-------RG--EVIVFLDAHCEVGLNWLPPLLAPIYSDRK   70 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~--n~G~a~arN~G~~~A-------~g--~~i~flD~D~~~~~~~l~~l~~~~~~~~~   70 (439)
                      |.+.++++.+++| +++++.+++  |.|.+.|.|.|++.+       ++  +++++.|+|+.++|++|. +++.+.... 
T Consensus       107 T~~~~~~l~~~~p-~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~-  183 (727)
T PRK11234        107 TQADVDAVCARFP-NVHKVVCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERK-  183 (727)
T ss_pred             HHHHHHHHHHHCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCC-
Confidence            5678889888897 787766565  789999999999987       33  568889999999999998 566665433 


Q ss_pred             eEe-eeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEE-eH--HHHHH
Q psy8674          71 IMT-VPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAM-DR--AFFLE  146 (439)
Q Consensus        71 ~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i-rr--~~f~~  146 (439)
                      .++ ++.. ...........     ..+...|.+     +.......   +.....   ...+.|..+++ ||  +++.+
T Consensus       184 ~~VQ~p~~-p~~~~~~~~~~-----~~~~~EFa~-----~~~~~~~~---~~~lgg---~~~l~G~~~af~Rr~l~al~~  246 (727)
T PRK11234        184 DLIQIPVY-PFEREWTHFTS-----GTYIDEFAE-----LHGKDVPV---REALAG---QVPSAGVGTCFSRRAVTALLE  246 (727)
T ss_pred             CeEeeccc-CCCccHHHHHH-----HHHHHHHHH-----HhhhhhHH---HHHcCC---CcccCCceEEEecccHHHHHH
Confidence            333 2211 10000000000     000001100     00000000   000011   12456888999 77  56888


Q ss_pred             hC---CCCCCCCCccchhhHHHHHHHHhCCcEEEeccc
Q psy8674         147 LG---GYDPGLLVWGGENFELSFKIWMCGGSIEWVPCS  181 (439)
Q Consensus       147 iG---gfde~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~  181 (439)
                      +|   +|+++.-   .||+|+++|+..+|+++.+.|..
T Consensus       247 ~ggg~~~~~~~l---TED~dlg~rL~~~G~~v~f~~~~  281 (727)
T PRK11234        247 DGDGIAFDVQSL---TEDYDIGFRLKEKGMREIFVRFP  281 (727)
T ss_pred             hcCCCCcCCCcc---hHHHHHHHHHHHCCCEEEEcccc
Confidence            88   6888763   39999999999999999999933

>PRK05454 glucosyltransferase MdoH; Provisional

Probab=98.91  E-value=5.9e-09  Score=107.82  Aligned_cols=159  Identities=14%  Similarity=0.061  Sum_probs=97.1

Q ss_pred             HHHHHHhcC--CcEEEEEecCCCChhHHHHhh--hhh--ccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee-e
Q psy8674           6 LEDYIERFN--GKVRLIRNTEREGLIRTRSRG--AKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI-D   78 (439)
Q Consensus         6 l~~~~~~~~--~~i~~i~~~~n~G~a~arN~G--~~~--A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~-~   78 (439)
                      +.+..++++  .+|.+.+.+.|.|. +|-|++  ++.  +++||++.+|+|+.+++++|.+++..++.++...+.... .
T Consensus       181 ~~~L~~~~~~~~~i~yr~R~~n~~~-KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~  259 (691)
T PRK05454        181 WLELRAELGGEGRIFYRRRRRNVGR-KAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPV  259 (691)
T ss_pred             HHHHHHhcCCCCcEEEEECCcCCCc-cHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCcc
Confidence            445556653  48999988888876 444665  676  566999999999999999999999999877765443211 1


Q ss_pred             cccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCC--CCCC
Q psy8674          79 GIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDP--GLLV  156 (439)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde--~~~~  156 (439)
                      ....+++-...         ..|.-.. +.      ......... .......+.|+|.++|++.|.++||+.+  +...
T Consensus       260 ~~n~~slfaR~---------qqf~~~~-y~------~~~~~G~~~-w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p  322 (691)
T PRK05454        260 AVGADTLFARL---------QQFATRV-YG------PLFAAGLAW-WQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGP  322 (691)
T ss_pred             CcCCCCHHHHH---------HHHHHHH-HH------HHHHhhhhh-hccCccccccceEEEEHHHHHHhcCCccccccCC
Confidence            11111100000         0000000 00      000000000 0012234679999999999998876432  1111


Q ss_pred             c----cchhhHHHHHHHHhCCcEEEecccc
Q psy8674         157 W----GGENFELSFKIWMCGGSIEWVPCSR  182 (439)
Q Consensus       157 ~----~~ED~Dl~~Rl~~~G~~i~~~p~~~  182 (439)
                      +    -.||.+++.+++.+||++.+.|+..
T Consensus       323 ~~~~~LseD~~~a~~l~~~GyrV~~~pd~~  352 (691)
T PRK05454        323 FGGHILSHDFVEAALMRRAGWGVWLAPDLP  352 (691)
T ss_pred             CCCCcccHHHHHHHHHHHCCCEEEEcCccc
Confidence            1    1599999999999999999999953

>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=98.77  E-value=2.6e-08  Score=102.48  Aligned_cols=153  Identities=14%  Similarity=0.162  Sum_probs=94.7

Q ss_pred             ChhHHHHHHHHhcCCcEEEEEecCC--CChhHHHHhhhhhc-------cCcE--EEEecCCcccCCCchHHHHHHHhcCC
Q psy8674           1 DLDKKLEDYIERFNGKVRLIRNTER--EGLIRTRSRGAKES-------RGEV--IVFLDAHCEVGLNWLPPLLAPIYSDR   69 (439)
Q Consensus         1 ~~~~~l~~~~~~~~~~i~~i~~~~n--~G~a~arN~G~~~A-------~g~~--i~flD~D~~~~~~~l~~l~~~~~~~~   69 (439)
                      +|.+.+++..+++| ++++|..+.+  .|.+.|.|.|++.+       .++|  ++..|+|+.++|+.|..+ ..+..++
T Consensus       114 ~T~~~~~~~~~~~p-~~~~v~~~~~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~  191 (703)
T PRK15489        114 ETITEVERMRRRYK-RLVRVEVPHDGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRK  191 (703)
T ss_pred             cHHHHHHHHhccCC-cEEEEEcCCCCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCc
Confidence            46677888888887 8888886655  78999999999886       4455  899999999999999876 4554444


Q ss_pred             CeEeeeeeecccCCCcccccccCCCCccccccccccccccCC--CchHHHhhccCCCCCccCccccceEEEEeHHHHHHh
Q psy8674          70 KIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENE--LPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL  147 (439)
Q Consensus        70 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~i  147 (439)
                      ..+-+|.... .......         ..+.+.-.+ ..++.  ++..     .....  .+ .+.|...++||++++++
T Consensus       192 ~~iQ~pV~~~-~~~~~~~---------l~~~~~~Ef-a~~~~~~l~~r-----~~l~~--~i-pl~Gv~~~frr~aL~~l  252 (703)
T PRK15489        192 DLVQLPVLSL-ERKWYEW---------VAGTYMDEF-AEWHQKDLVVR-----ESLTG--TV-PSAGVGTCFSRRALLAL  252 (703)
T ss_pred             ceeeeeeccC-CCccccH---------HHHHHHHHH-HHHhhhHHHHH-----HHcCC--ce-eccCcceeeeHHHHHHH
Confidence            3322222211 1110000         000000000 00111  1111     11111  22 25677889999999877


Q ss_pred             ---C---CCCCCCCCccchhhHHHHHHHHhCCcEEE
Q psy8674         148 ---G---GYDPGLLVWGGENFELSFKIWMCGGSIEW  177 (439)
Q Consensus       148 ---G---gfde~~~~~~~ED~Dl~~Rl~~~G~~i~~  177 (439)
                         |   +|+.+--   -||+|+++|+.+.|++..+
T Consensus       253 ~~~gg~~~~n~~sL---TED~Dlg~RL~~~G~r~~f  285 (703)
T PRK15489        253 MKERGNQPFNTSSL---TEDYDFSFRLAELGMQEIF  285 (703)
T ss_pred             HHhcCCCCCCCCCc---hHhHHHHHHHHHCCCceEE
Confidence               5   4665442   2999999999999999988

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional

Probab=98.76  E-value=1.6e-08  Score=95.54  Aligned_cols=138  Identities=20%  Similarity=0.204  Sum_probs=81.6

Q ss_pred             ecCCCChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHHHHHhcCC-CeEeeeeeecccCCCcccccccCCCCcccc
Q psy8674          22 NTEREGLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQTWEFRSVYEPDHHYRG   99 (439)
Q Consensus        22 ~~~n~G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (439)
                      ++.|.|.+.|+|.|++.|+||||+|+|+|+. ++|+||..+++.+..++ .+++.+..............       ..+
T Consensus        97 ~~~n~Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~-------~~~  169 (306)
T PRK13915         97 LPPRPGKGEALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDA-------TGG  169 (306)
T ss_pred             cccCCCHHHHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCc-------CCC
Confidence            4788999999999999999999999999997 89999999999997444 44554321110000000000       000


Q ss_pred             ccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHH-hCC-cEEE
Q psy8674         100 IFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWM-CGG-SIEW  177 (439)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~-~G~-~i~~  177 (439)
                      +........  .+.....   .. ...+ ... .++.+++||++++++. |+++|   | .|+++...+.. .|. ++..
T Consensus       170 gr~~~~~~~--~l~~~~~---~~-l~~i-~dp-~sG~~a~rr~~l~~l~-~~~~y---g-~e~~~l~~~~~~~g~~~i~~  236 (306)
T PRK13915        170 GRVTELVAR--PLLNLLR---PE-LAGF-VQP-LGGEYAGRRELLESLP-FVPGY---G-VEIGLLIDTLDRLGLDAIAQ  236 (306)
T ss_pred             CchHHHHHH--HHHHHHH---Hh-hhcc-cCc-chHhHHHHHHHHHhCC-CCCCC---e-ehHHHHHHHHHHhCcCceEE
Confidence            000000000  0000000   00 0011 112 3446899999999995 77764   3 69999999875 576 6666


Q ss_pred             ec
Q psy8674         178 VP  179 (439)
Q Consensus       178 ~p  179 (439)
                      ++
T Consensus       237 V~  238 (306)
T PRK13915        237 VD  238 (306)
T ss_pred             EE
Confidence            55

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=98.74  E-value=6.4e-08  Score=92.42  Aligned_cols=73  Identities=16%  Similarity=0.111  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeee
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP   75 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~   75 (439)
                      +.+.++++.++..++++++.++.|.|.++|.|.|++.|+||+++++|+|+..+|+++..+++.++++ .++|++
T Consensus        52 T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~-~DvV~~  124 (325)
T PRK10714         52 SAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEG-YDVVGT  124 (325)
T ss_pred             HHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhh-CCEEEE
Confidence            4566777666544578888889999999999999999999999999999999999999999999754 345543

>KOG3588|consensus

Probab=98.69  E-value=7.4e-08  Score=88.36  Aligned_cols=167  Identities=19%  Similarity=0.223  Sum_probs=106.1

Q ss_pred             HHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcE-EEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCC
Q psy8674           5 KLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEV-IVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQ   83 (439)
Q Consensus         5 ~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~-i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~   83 (439)
                      .+..+..+++ +++.+....-+..+.|.-.|++.-+.+. +.|+|-|..++.++|+....--. ...-+-.|.+......
T Consensus       278 ~~tslra~f~-~~q~l~lngeFSRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~Nt~-~gkqiyfPivFS~ynp  355 (494)
T KOG3588|consen  278 TITSLRASFI-PVQFLGLNGEFSRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLNTI-LGKQIYFPIVFSQYNP  355 (494)
T ss_pred             HHHHHhhcCC-ceEEecccchhhhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHhhccC-CCceEEEEEEEeecCc
Confidence            3456666775 6766665555667788889998886655 55679999999999887643222 1223334444332222


Q ss_pred             CcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhH
Q psy8674          84 TWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFE  163 (439)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~D  163 (439)
                      ..-+. .                  ....| .+..........+.-.+-- +..+.-|+.|..|||||..+..||+||+|
T Consensus       356 ~ivy~-~------------------~~~~p-~e~~~~~~~~tGfwRdfGf-Gmtc~yrsd~~~vgGFD~~I~GWG~EDV~  414 (494)
T KOG3588|consen  356 EIVYE-Q------------------DKPLP-AEQQLVIKKDTGFWRDFGF-GMTCQYRSDFLTVGGFDMEIKGWGGEDVD  414 (494)
T ss_pred             ceeec-C------------------CCCCc-hhHheeeccccccccccCC-ceeEEeeccceeecCcceeeeccCcchHH
Confidence            11110 0                  00011 1110000000111111111 23467899999999999999999999999


Q ss_pred             HHHHHHHhCCcEEEecccceecccccccccC
Q psy8674         164 LSFKIWMCGGSIEWVPCSRIVSLIRPVFKAD  194 (439)
Q Consensus       164 l~~Rl~~~G~~i~~~p~~~v~H~~~~~~~~~  194 (439)
                      |.-+..+.|.++.-.|+.-+.|++|+..-.+
T Consensus       415 Ly~K~v~~~l~viR~p~pGl~H~~H~~~C~~  445 (494)
T KOG3588|consen  415 LYRKYVHSGLKVIRTPEPGLFHLWHPKRCDD  445 (494)
T ss_pred             HHHHHHhcCcEEEecCCCceEEeecccccCC
Confidence            9999999999999999999999999987655

>KOG2547|consensus

Probab=98.64  E-value=5.6e-07  Score=83.09  Aligned_cols=118  Identities=16%  Similarity=0.303  Sum_probs=101.7

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCC-cEEEEEcCCCCCHH--
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNG-KVRLIRNTEREGLI--  343 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~v~~i~~~~~~g~~--  343 (439)
                      ++|.||||.|..+-+ +.+...++|.....|+.+  |++.+-+.++|+..+ .++++.+++|. ..+++...+..|.+  
T Consensus        83 ~LPgVSiikPl~G~d-~nl~~Nlesffts~Y~~~--ElLfcv~s~eDpAi~-vv~~Ll~kyp~VdAklf~gG~~vg~npK  158 (431)
T KOG2547|consen   83 KLPGVSIIKPLKGVD-PNLYHNLESFFTSQYHKY--ELLFCVESSEDPAIE-VVERLLKKYPNVDAKLFFGGEKVGLNPK  158 (431)
T ss_pred             CCCCceEEeecccCC-chhHHhHHHHHhhccCce--EEEEEEccCCCcHHH-HHHHHHhhCCCcceEEEEcccccccChh
Confidence            689999999999999 999999999999999966  999999999999888 99999999973 45677677766644  


Q ss_pred             -HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674         344 -RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV  388 (439)
Q Consensus       344 -~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~  388 (439)
                       .+.--|.+.|+.|+|++.|+|..+.|+.+..|...+.+++....+
T Consensus       159 InN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalv  204 (431)
T KOG2547|consen  159 INNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALV  204 (431)
T ss_pred             hhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeee
Confidence             344458889999999999999999999999999999988874433

>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=98.53  E-value=5.6e-07  Score=79.18  Aligned_cols=152  Identities=18%  Similarity=0.255  Sum_probs=87.8

Q ss_pred             HHHHHHHHhcCCcEEEEEecCCCCh---hHHHHhhhhhcc----CcEEEEecCCcccCCCchHHHHHHHh-----cCC-C
Q psy8674           4 KKLEDYIERFNGKVRLIRNTEREGL---IRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLLAPIY-----SDR-K   70 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~~~n~G~---a~arN~G~~~A~----g~~i~flD~D~~~~~~~l~~l~~~~~-----~~~-~   70 (439)
                      ..+..|+...+ ++-++.......+   +..+|.|+..|-    .++|+|||.||..+.+-.++++..+.     .+- +
T Consensus        52 ~~i~~~i~~~~-~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a  130 (346)
T COG4092          52 RLIRSYIDPMP-RVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDA  130 (346)
T ss_pred             HHHHHHhcccc-ceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCc
Confidence            45677887776 8888875443333   568999998886    89999999999998655555554332     221 2


Q ss_pred             eEeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCC
Q psy8674          71 IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGY  150 (439)
Q Consensus        71 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgf  150 (439)
                      -.+.|....-...+...        ......-|.....      ...-........+-.+. ..+.+++.|..|-..||+
T Consensus       131 ~~vlPV~~LNk~~~~v~--------f~~~d~f~d~~i~------es~~~~~~~~~~ff~~~-~T~~~liN~~~F~~tgGy  195 (346)
T COG4092         131 PLVLPVYHLNKADTQVF--------FDVEDMFLDAMIF------ESPLAEFRKEDNFFIAP-YTNIFLINRRMFSLTGGY  195 (346)
T ss_pred             ceeeeeeecchhhhhHH--------HHHHHHhhhhHhh------hhHHHHhCccccccccc-ccceEEEehhHHHHhcCC
Confidence            23333321100000000        0000011111100      00000011111122222 344689999999999999


Q ss_pred             CCCCCCccchhhHHHHHHHHh
Q psy8674         151 DPGLLVWGGENFELSFKIWMC  171 (439)
Q Consensus       151 de~~~~~~~ED~Dl~~Rl~~~  171 (439)
                      ||+|..+|+||.|+.-|+...
T Consensus       196 dE~F~GhG~EDfe~~~R~~l~  216 (346)
T COG4092         196 DERFRGHGSEDFEFLTRLGLY  216 (346)
T ss_pred             ccccccCCchhHHHHHHHHHH
Confidence            999999999999999998654

>KOG2978|consensus

Probab=98.51  E-value=1.2e-06  Score=73.18  Aligned_cols=159  Identities=16%  Similarity=0.166  Sum_probs=105.5

Q ss_pred             hHHHHHHHHhcC-CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           3 DKKLEDYIERFN-GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         3 ~~~l~~~~~~~~-~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      .+.+++..+-+. ++|.++......|++.|.-.|+.+|+|+|++.+|+|.--+|.++..+++...+..-+++.+....  
T Consensus        50 ~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa--  127 (238)
T KOG2978|consen   50 QEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYA--  127 (238)
T ss_pred             HHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEc--
Confidence            344555544444 68999998889999999999999999999999999999999999999999887765666443222  


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCC--CCCCCCCccc
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGG--YDPGLLVWGG  159 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGg--fde~~~~~~~  159 (439)
                             +       ..|.+.|.+..+  -+....... ........+.-++|++-+.+|++++..--  -..+|.    
T Consensus       128 -------~-------~ggV~gW~mkRk--~IS~gAn~l-a~~ll~~~~sdltGsFrLykk~vl~~li~e~vSkGyv----  186 (238)
T KOG2978|consen  128 -------G-------GGGVYGWDMKRK--IISRGANFL-ARILLNPGVSDLTGSFRLYKKEVLEKLIEESVSKGYV----  186 (238)
T ss_pred             -------C-------CCceecchhhHH--HHhhhhHHH-HHHhccCCCccCcceeeeehHHHHHhhHHHhhccchh----
Confidence                   1       013344544222  111111100 00011112345678889999999876521  122332    


Q ss_pred             hhhHHHHHHHHhCCcEEEeccccee
Q psy8674         160 ENFELSFKIWMCGGSIEWVPCSRIV  184 (439)
Q Consensus       160 ED~Dl~~Rl~~~G~~i~~~p~~~v~  184 (439)
                      =-.|+..|+.+.||.|-.+|-+.+.
T Consensus       187 fqmEll~ra~~~~y~IgEvPitFvd  211 (238)
T KOG2978|consen  187 FQMELLARARQHGYTIGEVPITFVD  211 (238)
T ss_pred             hhHHHHHhccccCceEeecceEEEe
Confidence            2568999999999999988866544

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=98.48  E-value=2.4e-06  Score=85.95  Aligned_cols=168  Identities=15%  Similarity=0.221  Sum_probs=113.0

Q ss_pred             hHHHHHHHHhcC-CcEEEEEec-CCCChhHHHHhhhhhcc-CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeec
Q psy8674           3 DKKLEDYIERFN-GKVRLIRNT-EREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG   79 (439)
Q Consensus         3 ~~~l~~~~~~~~-~~i~~i~~~-~n~G~a~arN~G~~~A~-g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~   79 (439)
                      ++.++++.++++ .+|++|... +++-.++|.+.|++... .++++|+|.|+.+++++|..+...-..+ .-+..|..-.
T Consensus       301 k~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g-~qvy~PI~Fs  379 (499)
T PF05679_consen  301 KELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPG-KQVYFPIVFS  379 (499)
T ss_pred             HHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcC-cEEEEeeecc
Confidence            457778888876 689999988 88889999999998654 5788888999999999999886543322 2233343322


Q ss_pred             ccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHh--CCCCCCCCCc
Q psy8674          80 IDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLEL--GGYDPGLLVW  157 (439)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~i--Ggfde~~~~~  157 (439)
                      .......+..    .......+..    .             ......+  ...-+.+++=++.|.++  ||||.....|
T Consensus       380 ~y~p~~~~~~----~~~~~~~~~i----~-------------~~~G~w~--~~gfg~~~~YksDy~~~~~~~~~~~~~gw  436 (499)
T PF05679_consen  380 QYNPDIVYAG----KPPEPDQFDI----S-------------KDTGFWR--RFGFGMVCFYKSDYMRIRGGGFDLSIRGW  436 (499)
T ss_pred             ccCCcccccC----CCCccccCcc----C-------------CCCCccc--cCCCceEEEEhhhhhhhcccccccccccc
Confidence            1111110000    0000000000    0             0000000  01123578899999999  9999999999


Q ss_pred             cchhhHHHHHHHHhC--CcEEEecccceecccccccccC
Q psy8674         158 GGENFELSFKIWMCG--GSIEWVPCSRIVSLIRPVFKAD  194 (439)
Q Consensus       158 ~~ED~Dl~~Rl~~~G--~~i~~~p~~~v~H~~~~~~~~~  194 (439)
                      |+||+||.-++.+.|  .+|.-.++.-+.|.+|+..-..
T Consensus       437 g~ED~~l~~~~l~~~~~l~V~Ra~ep~L~h~yh~~~C~~  475 (499)
T PF05679_consen  437 GGEDVDLYDKFLKSGHKLHVFRAVEPGLVHRYHPKHCDP  475 (499)
T ss_pred             cccHHHHHHHHHhCCCceEEEEccCCCeEEEecccCCCC
Confidence            999999999999999  8999999999999988765543

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

Probab=98.31  E-value=1.4e-06  Score=79.21  Aligned_cols=62  Identities=13%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             HHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674           6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK   70 (439)
Q Consensus         6 l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~   70 (439)
                      ..+.++++  +++++.. .|.|+++|+|.|+..|+|+||+++|+|..++|++++.+.+.+++++.
T Consensus        40 t~~i~~~~--~~~v~~~-~~~g~~~~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~  101 (229)
T cd02511          40 TVEIAKEY--GAKVYQR-WWDGFGAQRNFALELATNDWVLSLDADERLTPELADEILALLATDDY  101 (229)
T ss_pred             HHHHHHHc--CCEEEEC-CCCChHHHHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCC
Confidence            34555555  4888886 89999999999999999999999999999999999999999987664

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.

>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B

Probab=98.24  E-value=3.4e-06  Score=75.52  Aligned_cols=91  Identities=19%  Similarity=0.313  Sum_probs=63.3

Q ss_pred             eEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         271 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       271 vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      ||||+++.| + +.+.+|+.+|.++..++.  |+|-|++-.                          ...+.+.+.|.|+
T Consensus         1 isiI~c~n~-~-~~~~~~~~~i~~~~~~~~--~~i~i~~~~--------------------------~~~s~~~~yN~a~   50 (217)
T PF13712_consen    1 ISIIICVND-E-ELYEECLRSIKRLIGPPG--ELIEIDNVR--------------------------NAKSMAAAYNEAM   50 (217)
T ss_dssp             EEEEEEES--H-HHHHHHHHHHHHTT--TE--EEEEEE-SS--------------------------S-S-TTTHHHHHG
T ss_pred             CEEEEEECC-H-HHHHHHHHHHHhhCCCCc--eEEEEeccC--------------------------CCcCHHHHHHHHH
Confidence            455555544 4 788999999999877765  777665432                          2245778999999


Q ss_pred             hhcCCCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEeee
Q psy8674         351 KESRGEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       351 ~~a~~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~~  391 (439)
                      +.|+++|++|+++|..+ .++|+..+++.+++++...++++.
T Consensus        51 ~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGva   92 (217)
T PF13712_consen   51 EKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVA   92 (217)
T ss_dssp             GG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESE
T ss_pred             HhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEee
Confidence            99999999999999998 589999999999776765444443

>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ]

Probab=98.21  E-value=8.8e-06  Score=77.32  Aligned_cols=172  Identities=20%  Similarity=0.244  Sum_probs=108.7

Q ss_pred             CcEEEEEec--CCCChhHHHHhhhhhccC-cEEEEecCCcccCCCchHHHHHHHhcC--CCeEeeeeeecccCCCccccc
Q psy8674          15 GKVRLIRNT--EREGLIRTRSRGAKESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSD--RKIMTVPVIDGIDYQTWEFRS   89 (439)
Q Consensus        15 ~~i~~i~~~--~n~G~a~arN~G~~~A~g-~~i~flD~D~~~~~~~l~~l~~~~~~~--~~~~v~~~~~~~~~~~~~~~~   89 (439)
                      .+|++++.+  +-.|...||+++.+.=+| +|++-+|+.+++.++|=+.+++-+..-  +..+.+.....+....-....
T Consensus        88 ~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~~~~~~~~~~~  167 (343)
T PF11397_consen   88 DQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPGYEPDGGQPEP  167 (343)
T ss_pred             CeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCCcccccCCccc
Confidence            467777654  568999999999998887 899999999999999999999988863  333443222222210000000


Q ss_pred             ccC-CCCccccccccccccccCCCchHH---HhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCC-CCccchhhHH
Q psy8674          90 VYE-PDHHYRGIFEWGMLYKENELPERE---AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGL-LVWGGENFEL  164 (439)
Q Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~-~~~~~ED~Dl  164 (439)
                      ... ........+      ...++....   .........|...++..+++++-+-++..+| .||+.+ +++.+||+-+
T Consensus       168 ~~~~~~~lc~~~~------~~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eV-P~DP~lp~lF~GEE~~~  240 (343)
T PF11397_consen  168 EKTTVPRLCAARF------GPDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREV-PYDPHLPFLFDGEEISM  240 (343)
T ss_pred             cCCcccEEEEeEE------CCCCcEeecceecccccccCCCeeeceecccEEEcchhheecC-CCCCCcccccccHHHHH
Confidence            000 000000111      111111110   0111122356677777777777777777777 599988 2233599999


Q ss_pred             HHHHHHhCCcEEEecccceeccccccccc
Q psy8674         165 SFKIWMCGGSIEWVPCSRIVSLIRPVFKA  193 (439)
Q Consensus       165 ~~Rl~~~G~~i~~~p~~~v~H~~~~~~~~  193 (439)
                      +.|+|..||.++.-+...++|.+....+.
T Consensus       241 aaRlwT~GYD~Y~P~~~v~~H~Y~r~~~p  269 (343)
T PF11397_consen  241 AARLWTHGYDFYSPTRNVLFHLYSRSKRP  269 (343)
T ss_pred             HHHHHHcCCccccCCCceeEEEccCCCCC
Confidence            99999999999999999999998764443

>KOG3916|consensus

Probab=98.00  E-value=1.2e-05  Score=73.59  Aligned_cols=127  Identities=18%  Similarity=0.320  Sum_probs=81.3

Q ss_pred             HHHHHHh--cCCcEEEEEecCCC--ChhHHHHhhhhhccC----cEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeee
Q psy8674           6 LEDYIER--FNGKVRLIRNTERE--GLIRTRSRGAKESRG----EVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI   77 (439)
Q Consensus         6 l~~~~~~--~~~~i~~i~~~~n~--G~a~arN~G~~~A~g----~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~   77 (439)
                      |-.++++  ..-+|-||+--.|.  ..|.-.|.|...|--    |-++|-|-|..+..|-            ..-.|+..
T Consensus       173 LhP~LqrQrL~y~iyVieQ~g~~~FNRakL~NVGf~eAlkd~~wdCfIFHDVDllPenDr------------NlY~C~~~  240 (372)
T KOG3916|consen  173 LHPFLQRQRLDYRIYVIEQAGNKPFNRAKLLNVGFLEALKDYGWDCFIFHDVDLLPENDR------------NLYGCPEQ  240 (372)
T ss_pred             hhHHHHhhhhceeEEEEEecCCCcccHHHhhhhHHHHHHHhcCCCEEEEecccccccCCC------------CccCCCCC
Confidence            3445543  11368788744444  457778999988854    5588888888775542            11111111


Q ss_pred             ecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674          78 DGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW  157 (439)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~  157 (439)
                      .       .+..      .....+.+.+.                      ...+-|+..++.++-|.+|.||...|..|
T Consensus       241 P-------RH~s------va~dk~gy~LP----------------------Y~~~FGGVsalt~~qf~kINGFsN~fWGW  285 (372)
T KOG3916|consen  241 P-------RHMS------VALDKFGYRLP----------------------YKEYFGGVSALTKEQFRKINGFSNAFWGW  285 (372)
T ss_pred             C-------cchh------hhhhhcccccc----------------------chhhhCchhhccHHHHHHhcCCCchhccc
Confidence            0       0000      00111222211                      12446788899999999999999999999


Q ss_pred             cchhhHHHHHHHHhCCcEEEec
Q psy8674         158 GGENFELSFKIWMCGGSIEWVP  179 (439)
Q Consensus       158 ~~ED~Dl~~Rl~~~G~~i~~~p  179 (439)
                      |+||-|+.-|+..+|++|---|
T Consensus       286 GGEDDDl~nRv~~ag~~IsRp~  307 (372)
T KOG3916|consen  286 GGEDDDLWNRVQLAGMKISRPP  307 (372)
T ss_pred             CCcchHHHHHHHhcCceeecCC
Confidence            9999999999999999975433

>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2

Probab=97.89  E-value=9.9e-05  Score=57.04  Aligned_cols=82  Identities=20%  Similarity=0.110  Sum_probs=56.6

Q ss_pred             cCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCC---H-HHHHHHHHhh-
Q psy8674         278 HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG---L-IRTRSRGAKE-  352 (439)
Q Consensus       278 ~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g---~-~~a~n~g~~~-  352 (439)
                      +|+. ..|.+.|.........    .|+|+||||+|+|.+ +++++    + .+.++.......   . ...++...+. 
T Consensus         1 rne~-~~L~~wl~~~~~lG~d----~i~i~d~~s~D~t~~-~l~~~----~-~v~i~~~~~~~~~~~~~~~~~~~~~~~~   69 (97)
T PF13704_consen    1 RNEA-DYLPEWLAHHLALGVD----HIYIYDDGSTDGTRE-ILRAL----P-GVGIIRWVDPYRDERRQRAWRNALIERA   69 (97)
T ss_pred             CChH-HHHHHHHHHHHHcCCC----EEEEEECCCCccHHH-HHHhC----C-CcEEEEeCCCccchHHHHHHHHHHHHhC
Confidence            4777 8899999988765432    799999999999977 77765    2 466665544332   1 2233333333 


Q ss_pred             cCCCEEEEEcCCCccCCC
Q psy8674         353 SRGEVIVFLDAHCEVGLN  370 (439)
Q Consensus       353 a~~d~i~~ld~D~~~~~~  370 (439)
                      ..++|++++|+|..+.+.
T Consensus        70 ~~~dWvl~~D~DEfl~~~   87 (97)
T PF13704_consen   70 FDADWVLFLDADEFLVPP   87 (97)
T ss_pred             CCCCEEEEEeeeEEEecC
Confidence            468999999999987543

>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2

Probab=97.85  E-value=0.00025  Score=70.96  Aligned_cols=123  Identities=14%  Similarity=0.115  Sum_probs=80.7

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCC-----ChhhHHHHHHHHHHH------------c----
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFS-----SKADLDQKLEDYIQR------------F----  327 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s-----~d~t~~~~~~~~~~~------------~----  327 (439)
                      +.+-..||||||..+.|+++|+||..++|++..-=|+||.||-     .+.+..+++-+....            +    
T Consensus        25 ~~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~~~~~  104 (527)
T PF03142_consen   25 KFVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSYVSLG  104 (527)
T ss_pred             ceEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcceEEec
Confidence            3466789999998799999999999999997665677777762     233333355444330            0    


Q ss_pred             -------------------C------------CcEEEEE----------cCCCCCHHHHHHH------------------
Q psy8674         328 -------------------N------------GKVRLIR----------NTEREGLIRTRSR------------------  348 (439)
Q Consensus       328 -------------------~------------~~v~~i~----------~~~~~g~~~a~n~------------------  348 (439)
                                         .            +-+.+++          .+.|.|+--..-.                  
T Consensus       105 ~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~~~~~~~  184 (527)
T PF03142_consen  105 EGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNNPMTPLE  184 (527)
T ss_pred             cCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCCCCchHH
Confidence                               0            0122333          2556663211111                  


Q ss_pred             -----------HHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeee
Q psy8674         349 -----------GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVI  391 (439)
Q Consensus       349 -----------g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~  391 (439)
                                 |+.....||++.+|+|+.+.|+.+..|+..+.+++. +.+|+..
T Consensus       185 ~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t  239 (527)
T PF03142_consen  185 LELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGET  239 (527)
T ss_pred             HHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEecee
Confidence                       122233689999999999999999999999987666 6666654

4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups

>PLN02893 Cellulose synthase-like protein

Probab=97.79  E-value=0.00016  Score=74.47  Aligned_cols=53  Identities=8%  Similarity=0.010  Sum_probs=46.1

Q ss_pred             CcEEEEEecCCCC-----hhHHHHhhhhh----ccCcEEEEecCCccc-CCCchHHHHHHHhc
Q psy8674          15 GKVRLIRNTEREG-----LIRTRSRGAKE----SRGEVIVFLDAHCEV-GLNWLPPLLAPIYS   67 (439)
Q Consensus        15 ~~i~~i~~~~n~G-----~a~arN~G~~~----A~g~~i~flD~D~~~-~~~~l~~l~~~~~~   67 (439)
                      |.+.++..+++.|     .|+|.|.+++.    +.|+||+.+|+|..+ .|++|.+.+-.+.+
T Consensus       264 P~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~D  326 (734)
T PLN02893        264 PNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLD  326 (734)
T ss_pred             CceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcC
Confidence            4899999888743     69999999995    789999999999997 68999999988874

>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function

Probab=97.72  E-value=0.00085  Score=61.01  Aligned_cols=120  Identities=17%  Similarity=0.174  Sum_probs=83.4

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCC--hhhHHHHHHHHHHHcC---------CcEEEE
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS--KADLDQKLEDYIQRFN---------GKVRLI  334 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~---------~~v~~i  334 (439)
                      ...++|-|++|..|.+ .++..-++.|...+||...+.+-++.+.++  |.+.+ .+++..++..         ..++++
T Consensus        22 ~~~e~VLILtplrna~-~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~-~l~~~~~~~q~~~~~~~~F~~itIl   99 (269)
T PF03452_consen   22 RNKESVLILTPLRNAA-SFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLK-ILEAALKKLQSHGPESKRFRSITIL   99 (269)
T ss_pred             ccCCeEEEEEecCCch-HHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHH-HHHHHHHHHhccCcccCCcceEEEE
Confidence            3557899999999999 999999999999999987667744445555  56655 6665543321         157776


Q ss_pred             EcCCCC--C------------------HHHHHHHHHhhcC---CCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEee
Q psy8674         335 RNTERE--G------------------LIRTRSRGAKESR---GEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       335 ~~~~~~--g------------------~~~a~n~g~~~a~---~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                      +.+-..  |                  .+.++|..+-.+-   .+|++++|+|..- +++.|+.|    ..++..+++|.
T Consensus       100 ~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dl----i~~~kdIivPn  175 (269)
T PF03452_consen  100 RKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDL----IAHDKDIIVPN  175 (269)
T ss_pred             cCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHH----HhCCCCEEccc
Confidence            543211  1                  5677888776654   5899999999995 45544444    45667777776


Q ss_pred             e
Q psy8674         391 I  391 (439)
Q Consensus       391 ~  391 (439)
                      +
T Consensus       176 ~  176 (269)
T PF03452_consen  176 C  176 (269)
T ss_pred             e
Confidence            5

These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

Probab=97.64  E-value=0.00021  Score=67.61  Aligned_cols=118  Identities=12%  Similarity=0.119  Sum_probs=74.8

Q ss_pred             HHHhhhhhccCcEEEEecCCcccCCCch---HHHHHHHhcCCCeEeeeeeecccCCCcccccccCCCCcccccccccccc
Q psy8674          31 TRSRGAKESRGEVIVFLDAHCEVGLNWL---PPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY  107 (439)
Q Consensus        31 arN~G~~~A~g~~i~flD~D~~~~~~~l---~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (439)
                      |+|.++..++++++++|+.|+.+.|+++   +.++..++.++....+.....   .......         .        
T Consensus        88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd---nG~~~~~---------~--------  147 (334)
T cd02514          88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND---NGKEHFV---------D--------  147 (334)
T ss_pred             HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc---CCccccc---------C--------
Confidence            9999999999999999999999999955   777777777776544322110   0000000         0        


Q ss_pred             ccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHH--HHhCCcEEEecccceec
Q psy8674         108 KENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKI--WMCGGSIEWVPCSRIVS  185 (439)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl--~~~G~~i~~~p~~~v~H  185 (439)
                                   ......+++.++.|..+|++|+.|+++   ++.+..   -|+|+.+|+  .++|-.+..---++.+|
T Consensus       148 -------------~~~~~lyrs~ff~glGWml~r~~W~e~---~~~wp~---~~WD~w~R~~~~rkgr~cirPeisRt~~  208 (334)
T cd02514         148 -------------DTPSLLYRTDFFPGLGWMLTRKLWKEL---EPKWPK---AFWDDWMRLPEQRKGRECIRPEISRTYH  208 (334)
T ss_pred             -------------CCcceEEEecCCCchHHHHHHHHHHHh---CCCCCC---CChHHhhcchhhhcCCccccCCcchhee
Confidence                         001122344566677789999999997   665532   599999997  44454433333344455


Q ss_pred             cc
Q psy8674         186 LI  187 (439)
Q Consensus       186 ~~  187 (439)
                      ..
T Consensus       209 ~g  210 (334)
T cd02514         209 FG  210 (334)
T ss_pred             cc
Confidence            54

Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.

>PF13506 Glyco_transf_21: Glycosyl transferase family 21

Probab=97.45  E-value=0.0003  Score=60.75  Aligned_cols=66  Identities=15%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             EEEcCCCC---CHHHHHHHHHhh-cCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCC
Q psy8674         333 LIRNTERE---GLIRTRSRGAKE-SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQT  398 (439)
Q Consensus       333 ~i~~~~~~---g~~~a~n~g~~~-a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~  398 (439)
                      ++..+...   ++..++..+++. +++|+++++|+|..++|++|..|+..++++..++|+......+.++
T Consensus         6 lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~   75 (175)
T PF13506_consen    6 LVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARG   75 (175)
T ss_pred             EEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcC
Confidence            44444443   367778888898 9999999999999999999999999999988888876655555554

>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni []

Probab=97.44  E-value=0.0017  Score=59.51  Aligned_cols=144  Identities=10%  Similarity=0.020  Sum_probs=96.2

Q ss_pred             ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc-------CCC--C
Q psy8674         270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN-------TER--E  340 (439)
Q Consensus       270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~-------~~~--~  340 (439)
                      ..+-.|-+.||. .+|++||+|++...     .|.||.=|.|+|+|.+ ++.++++.+|.-+.+...       ++.  -
T Consensus        88 ~~~~~iRvKnE~-~tl~~si~S~Lpai-----~~gVI~yNdc~D~t~E-iil~fckkyP~fip~~Ypy~v~~~n~~~~~n  160 (347)
T PF06306_consen   88 NPWAFIRVKNEA-MTLAESIESILPAI-----DEGVIGYNDCTDGTEE-IILEFCKKYPSFIPIKYPYEVIIKNPKSEEN  160 (347)
T ss_pred             CcceEEEEcchh-hhHHHHHHHHHHHH-----hccEEEeecCCCCHHH-HHHHHHHhCcccccccCcchhhccCCchhhh
Confidence            578899999999 99999999998633     2888888999999966 999999999864444221       111  1


Q ss_pred             CHHHHHHHHHhhc-CCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCCCCCceeeeeccc
Q psy8674         341 GLIRTRSRGAKES-RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGM  419 (439)
Q Consensus       341 g~~~a~n~g~~~a-~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~  419 (439)
                      ....=.|.++... +.+|++-+|+|-+..+.-|-+..-...+..+++..+.|+-+=.+.-.|--+.+....+.+..||.+
T Consensus       161 ~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~pk~~~~~v~YsRINF~v~D~eifI~n~g~~~~l~~~gDqlL  240 (347)
T PF06306_consen  161 SLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYIPKNDYDVVSYSRINFHVFDGEIFIQNNGNFGFLIAGGDQLL  240 (347)
T ss_pred             hhhhhhhhhhcccccceEEEEeccceeecHHHHhhhheeeccccceEEecceeEEEECCeEEEEecCCcccccCCCceEE
Confidence            1334456666654 589999999999988766544433334444566668886655554445444443333444555544


Q ss_pred             e
Q psy8674         420 L  420 (439)
Q Consensus       420 ~  420 (439)
                      .
T Consensus       241 I  241 (347)
T PF06306_consen  241 I  241 (347)
T ss_pred             E
Confidence            3

>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=97.44  E-value=0.0015  Score=63.42  Aligned_cols=118  Identities=17%  Similarity=0.240  Sum_probs=66.4

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC---------
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT---------  337 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~---------  337 (439)
                      ..+.+-|+|.++|+. +.|.+||++|++.......+.|||..||+...+.+ .++.+..    .+++++..         
T Consensus        91 ~~~~~pVlV~AcNRp-~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~-vi~~y~~----~v~~i~~~~~~~i~~~~  164 (434)
T PF03071_consen   91 KEPVIPVLVFACNRP-DYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAE-VIKSYGD----QVTYIQHPDFSPITIPP  164 (434)
T ss_dssp             ------EEEEESS-T-T-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHH-HHHGGGG----GSEEEE-S--S-----T
T ss_pred             CCCcceEEEEecCCc-HHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHH-HHHHhhh----hheeeecCCcCCceeCc
Confidence            456788999999999 99999999999865433234799999998877655 6666532    24444322         


Q ss_pred             CC------CCHH----HHHHHHHhhcCCCEEEEEcCCCccCCCChHHH---HHhhhcCCCEEEEee
Q psy8674         338 ER------EGLI----RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPL---LAPIYSDRKIMTVPV  390 (439)
Q Consensus       338 ~~------~g~~----~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l---~~~~~~~~~~~v~~~  390 (439)
                      ..      .+.+    .|++..+..-..+.++++.+|..+.|++++-+   ...+++++...++..
T Consensus       165 ~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSa  230 (434)
T PF03071_consen  165 KEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISA  230 (434)
T ss_dssp             T-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES
T ss_pred             ccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEc
Confidence            11      0112    23333333345789999999999999999655   455566777655543

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.

>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=97.18  E-value=0.0026  Score=56.62  Aligned_cols=107  Identities=15%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             CCceEEEEEecCCC--hhHHHHHHH--HHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC---C
Q psy8674         268 LPKASVILVFHNEG--FSSLMRTVH--SIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER---E  340 (439)
Q Consensus       268 ~p~vsiiip~~n~~--~~~l~~~l~--sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~---~  340 (439)
                      |+.+++|||+--..  +..-.+.+.  +++.--.+....+||++++.+.-+   ..+..+.+..+ ++.++.....   .
T Consensus         1 m~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d---~~i~~~i~~~~-~~~yl~~~s~~~F~   76 (346)
T COG4092           1 MQPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD---RLIRSYIDPMP-RVLYLDFGSPEPFA   76 (346)
T ss_pred             CCCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchhHH---HHHHHHhcccc-ceEEEecCCCcccc
Confidence            46789999987543  122233333  222221223345999998876433   26777777665 6666654322   2


Q ss_pred             CHHHHHHHHHhhcC----CCEEEEEcCCCccCCCChHHHHHh
Q psy8674         341 GLIRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLLAP  378 (439)
Q Consensus       341 g~~~a~n~g~~~a~----~d~i~~ld~D~~~~~~~l~~l~~~  378 (439)
                      ..+.+.|.|+.++.    +++++|||.||..+.+-..+++..
T Consensus        77 s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~  118 (346)
T COG4092          77 SETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSI  118 (346)
T ss_pred             chhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHH
Confidence            34778999998876    999999999999986656666543

>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan

Probab=97.15  E-value=0.0024  Score=60.57  Aligned_cols=160  Identities=12%  Similarity=0.103  Sum_probs=94.0

Q ss_pred             CCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcC----CCeEeeeeeecccCCCcc-----ccc--ccCC
Q psy8674          25 REGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD----RKIMTVPVIDGIDYQTWE-----FRS--VYEP   93 (439)
Q Consensus        25 n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~~~~~-----~~~--~~~~   93 (439)
                      -+-+...||.|...|+.++++.+|.|..++++.-+.+.+.+...    ..+.|.|...........     ...  ..+.
T Consensus       112 ~YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaFE~~~~~~~P~~K~eL~~~~~~~~  191 (317)
T PF13896_consen  112 LYPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAFETREGADIPRTKKELLELLKNGK  191 (317)
T ss_pred             CCChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeeeecccCcCCCCCHHHHHHHHHhCc
Confidence            34567999999999999999999999999999888887766643    234444543321110000     000  0000


Q ss_pred             CCccccccccccccccCCCchHHHhhccCC----CCCccCccccc--eEEEEeHHHHHHhCCCCCCCCCccchhhHHHHH
Q psy8674          94 DHHYRGIFEWGMLYKENELPEREAKKRKYN----SEPYKSPTHAG--GLFAMDRAFFLELGGYDPGLLVWGGENFELSFK  167 (439)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g--~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~R  167 (439)
                      ..    .|....-...+..+....|.....    ..++.+.+-.+  -.+.++|    .+-.|||+|..+|..-+-..+-
T Consensus       192 ~~----~Fh~~~~~~~h~~t~~~~W~~~~~~~~~~~~y~v~~~~~~EP~~I~~~----~~P~yDErF~~yg~nk~s~~~e  263 (317)
T PF13896_consen  192 AR----PFHHKVCPQGHGPTNYDRWFSAPESDELDVPYEVKYEDGWEPYYIGRR----NVPLYDERFRGYGFNKISQIYE  263 (317)
T ss_pred             hh----hccccccccCcCCccHHHHhccCCcCCCcceEEEccCCCccCEEEccC----CCCCCcccccccccchHHHHHH
Confidence            00    010000001111111122221111    11222221111  1234443    5678999999999989999999


Q ss_pred             HHHhCCcEEEecccceecccccccc
Q psy8674         168 IWMCGGSIEWVPCSRIVSLIRPVFK  192 (439)
Q Consensus       168 l~~~G~~i~~~p~~~v~H~~~~~~~  192 (439)
                      |..+||+....|++.+.|.++....
T Consensus       264 L~~~gy~F~VL~~aFlVH~~h~~~~  288 (317)
T PF13896_consen  264 LCAAGYRFHVLPNAFLVHRPHKPSN  288 (317)
T ss_pred             HHHcCCEEEEcCCeeEEecCCCCcc
Confidence            9999999999999999999766544

>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.11  E-value=0.0013  Score=58.10  Aligned_cols=62  Identities=31%  Similarity=0.318  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHH
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI   65 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~   65 (439)
                      +.+.++++.++.+ ++.......|.|.+.|+|.|+..+.|++++|+|+|+. .+..+..++...
T Consensus        46 t~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~  107 (291)
T COG0463          46 TTEIAIEYGAKDV-RVIRLINERNGGLGAARNAGLEYARGDYIVFLDADDQ-HPPELIPLVAAG  107 (291)
T ss_pred             hHHHHHHHhhhcc-eEEEeecccCCChHHHHHhhHHhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence            4556666666553 5777777999999999999999999999999999999 998888855444

>KOG2547|consensus

Probab=96.99  E-value=0.0019  Score=60.30  Aligned_cols=152  Identities=14%  Similarity=0.116  Sum_probs=94.5

Q ss_pred             HHHHHHHHhcC-CcEEEEEecCCCChhHHHH---hhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeec
Q psy8674           4 KKLEDYIERFN-GKVRLIRNTEREGLIRTRS---RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG   79 (439)
Q Consensus         4 ~~l~~~~~~~~-~~i~~i~~~~n~G~a~arN---~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~   79 (439)
                      +.++..+++|| -.-+++--.+..|...-.|   .|.+.|+-|+|+++|+|..+.||.+-.|+..+..+...+.+.+...
T Consensus       130 ~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py  209 (431)
T KOG2547|consen  130 EVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPY  209 (431)
T ss_pred             HHHHHHHhhCCCcceEEEEcccccccChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCce
Confidence            56788889998 4557777666677655444   4789999999999999999999999999999997665544322222


Q ss_pred             -ccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCcc
Q psy8674          80 -IDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWG  158 (439)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~  158 (439)
                       .+.+.+..         .....-++......+++..          .......+|-.-++||+++++.||+. .|.-|-
T Consensus       210 ~~dr~Gf~a---------tle~~~fgTsh~r~yl~~n----------~~~~~c~tgms~~mrK~~ld~~ggi~-~f~~yL  269 (431)
T KOG2547|consen  210 CKDRQGFDA---------TLEQVYFGTSHPRIYLSGN----------VLGFNCSTGMSSMMRKEALDECGGIS-AFGGYL  269 (431)
T ss_pred             eeccccchh---------hhhheeeccCCceEEEccc----------cccccccccHHHHHHHHHHHHhccHH-HHHHHH
Confidence             11111100         0000001111111111100          01111223444578999999999974 343345


Q ss_pred             chhhHHHHHHHHhCCcE
Q psy8674         159 GENFELSFKIWMCGGSI  175 (439)
Q Consensus       159 ~ED~Dl~~Rl~~~G~~i  175 (439)
                      .||+=+.--+...|++-
T Consensus       270 aedyFaaksllSRG~ks  286 (431)
T KOG2547|consen  270 AEDYFAAKSLLSRGWKS  286 (431)
T ss_pred             HHHHHHHHHHHhhhhhh
Confidence            79999999999999883

>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]

Probab=96.96  E-value=0.0088  Score=58.52  Aligned_cols=128  Identities=13%  Similarity=0.139  Sum_probs=79.7

Q ss_pred             CceEEEEEecCCCh----hHHHHHHHHHHhcCC-cCCcceEEEEeCCCChhh-HH--HHHHHHHHHcC--CcEEEEEcCC
Q psy8674         269 PKASVILVFHNEGF----SSLMRTVHSIIKRTP-AQYLEEIILVDDFSSKAD-LD--QKLEDYIQRFN--GKVRLIRNTE  338 (439)
Q Consensus       269 p~vsiiip~~n~~~----~~l~~~l~sl~~q~~-~~~~~eiivvdd~s~d~t-~~--~~~~~~~~~~~--~~v~~i~~~~  338 (439)
                      .+..|++|+|||+.    .-|+.+-+|+.+... .+|  .+.|+.|.-+.+- +.  +....++++..  .+|-+-+..+
T Consensus       144 hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~F--D~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr~  221 (736)
T COG2943         144 HRTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHF--DFFVLSDSRDPDIALAEQKAWAELCRELGGEGNIFYRRRRR  221 (736)
T ss_pred             cceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccc--eEEEEcCCCCchhhhhHHHHHHHHHHHhCCCCceeeehHhh
Confidence            35889999999985    445666677776542 344  7777766543321 11  12223444444  3555554444


Q ss_pred             CCCH-HHHHHHHHhh--cCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeeecCCC
Q psy8674         339 REGL-IRTRSRGAKE--SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGIDYQT  398 (439)
Q Consensus       339 ~~g~-~~a~n~g~~~--a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~  398 (439)
                      |.+. +++..-=.+.  ...++.++||+|..++.+.+..|++.++.++. +++-.....++.++
T Consensus       222 n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~T  285 (736)
T COG2943         222 NVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGDT  285 (736)
T ss_pred             hhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcch
Confidence            4432 2211111222  34789999999999999999999999999887 45555555666666

>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2

Probab=96.90  E-value=0.0013  Score=65.96  Aligned_cols=135  Identities=18%  Similarity=0.153  Sum_probs=81.6

Q ss_pred             hhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeE-eeeeeecccCCCcccccccCCCCccccccccccccccCCCc
Q psy8674          35 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM-TVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP  113 (439)
Q Consensus        35 G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (439)
                      |+....-+||+.+|+|+.+.|+.+..|+..+.+++..+ +++.... .....        ..       |......++.-
T Consensus       196 g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i-~n~~~--------s~-------~t~~Q~fEY~i  259 (527)
T PF03142_consen  196 GVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRI-DNKGQ--------SW-------WTMYQVFEYAI  259 (527)
T ss_pred             ccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEE-cCCCC--------CH-------hhheeccchhH
Confidence            55555679999999999999999999999999888764 4443332 11110        00       11111111222


Q ss_pred             hHHHhhccCCCCCccCccccceEEEEeHHHHHH--------------hCCCCCC----C----CCccchhhHHHHHHHHh
Q psy8674         114 EREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLE--------------LGGYDPG----L----LVWGGENFELSFKIWMC  171 (439)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~--------------iGgfde~----~----~~~~~ED~Dl~~Rl~~~  171 (439)
                      .+.. .+...+-...+..++||+-++|-+....              +.+|.+.    +    ...-+||--||--+.+.
T Consensus       260 sh~l-~Ka~Es~fG~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~~lGEDR~LttLlLk~  338 (527)
T PF03142_consen  260 SHHL-QKAFESVFGSVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLLDLGEDRWLTTLLLKQ  338 (527)
T ss_pred             HHHH-HHHHHHHhCceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhhhcchhHHHHHHHHhh
Confidence            1111 1112222234557789998888777654              1122221    1    01236999999777777


Q ss_pred             --CCcEEEecccceecc
Q psy8674         172 --GGSIEWVPCSRIVSL  186 (439)
Q Consensus       172 --G~~i~~~p~~~v~H~  186 (439)
                        ++++.|+|.+..+-.
T Consensus       339 ~~~~k~~y~~~A~a~T~  355 (527)
T PF03142_consen  339 FPGYKTEYVPSAVAYTD  355 (527)
T ss_pred             CCCceEEEccccccccc
Confidence              789999999977655

4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups

>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis

Probab=96.83  E-value=0.014  Score=54.60  Aligned_cols=94  Identities=16%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCC---hhhHH--HHHHHHHHHcCCcEEEEEcC------
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS---KADLD--QKLEDYIQRFNGKVRLIRNT------  337 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~---d~t~~--~~~~~~~~~~~~~v~~i~~~------  337 (439)
                      -+.+||||+.||....    |+.++..-+.+.  -||||-|++.   |....  +.++.+.......+.+++..      
T Consensus        50 ~~maIVVP~KnE~l~l----leGVL~gIPh~C--~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA~  123 (381)
T PF09488_consen   50 SKMAIVVPCKNEKLKL----LEGVLSGIPHDC--LIIVVSNSSREPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLAE  123 (381)
T ss_dssp             TTEEEEEEESS--HHH----HHHHHHCS-TTS--EEEEEE---CSSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHHH
T ss_pred             hCcEEEEECCCCchhh----hhhhhhcCCCCC--eEEEEECCCCCCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHHH
Confidence            3689999999998443    444454444444  7899988877   43221  26666666543456666542      


Q ss_pred             ----------------CCCCHHHHHHHHHhhcC---CCEEEEEcCCCccC
Q psy8674         338 ----------------EREGLIRTRSRGAKESR---GEVIVFLDAHCEVG  368 (439)
Q Consensus       338 ----------------~~~g~~~a~n~g~~~a~---~d~i~~ld~D~~~~  368 (439)
                                      -+-|++.++-.|+-.|+   .+||-|+|+|..++
T Consensus       124 Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiP  173 (381)
T PF09488_consen  124 AFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIP  173 (381)
T ss_dssp             HHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-H
T ss_pred             HHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCc
Confidence                            12468888888876654   69999999998875

Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.

>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function

Probab=96.54  E-value=0.018  Score=51.95  Aligned_cols=90  Identities=11%  Similarity=0.172  Sum_probs=63.0

Q ss_pred             HHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhh---cCCCEEEE--E
Q psy8674         287 RTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKE---SRGEVIVF--L  361 (439)
Q Consensus       287 ~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~---a~~d~i~~--l  361 (439)
                      -||.||..|+.++|  .+||+-+........+.+.++.+.++ .++++..+... ...+...+++.   ..+++++.  |
T Consensus        46 ~~LpSl~~QTd~dF--~~lv~~~~~~P~~~~~rL~~l~~~~p-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~RL  121 (234)
T PF11316_consen   46 YCLPSLRAQTDQDF--TWLVLFDDDLPEPYRERLRDLLADYP-QFRIVFRPPGP-HRDAMRRAINAARRDGADPVLQFRL  121 (234)
T ss_pred             HHhhHHHhccCCCe--EEEEEECCCCCHHHHHHHHHHhccCC-CcEEEecCCch-HHHHHHHHHhhhccCCCCEEEEEEE
Confidence            47899999999998  77765444444444558888887776 56666554433 45555555533   23555443  6


Q ss_pred             cCCCccCCCChHHHHHhhh
Q psy8674         362 DAHCEVGLNWLPPLLAPIY  380 (439)
Q Consensus       362 d~D~~~~~~~l~~l~~~~~  380 (439)
                      |+|+.+..++++.+-+.+.
T Consensus       122 DdDDAl~~dFV~rlr~~a~  140 (234)
T PF11316_consen  122 DDDDALHRDFVARLRRAAA  140 (234)
T ss_pred             CCcchhhHHHHHHHHHHHH
Confidence            9999999999999999874

>KOG3917|consensus

Probab=96.31  E-value=0.006  Score=52.80  Aligned_cols=47  Identities=21%  Similarity=0.397  Sum_probs=42.5

Q ss_pred             cccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHHhCCcEEE
Q psy8674         131 THAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEW  177 (439)
Q Consensus       131 ~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~~G~~i~~  177 (439)
                      .+.|+.++++++-|.++.|+...|..||-||-||.+|+..+|..+.-
T Consensus       180 ~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltR  226 (310)
T KOG3917|consen  180 KFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTR  226 (310)
T ss_pred             hhcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEec
Confidence            45788999999999999999999999999999999999999977543

>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase

Probab=96.20  E-value=0.052  Score=50.59  Aligned_cols=105  Identities=15%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCC---hhhH--HHHHHHHHHHcCCcEEEEEcCC-----
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS---KADL--DQKLEDYIQRFNGKVRLIRNTE-----  338 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~---d~t~--~~~~~~~~~~~~~~v~~i~~~~-----  338 (439)
                      -+..||||+.||....    |+.++.--+.+.  -||||.|++.   |...  .+.++.+..-....+.+++...     
T Consensus        50 ~~maIVVP~KdE~l~l----leGVL~gIPh~c--~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~r~~i~vHQkDp~la~  123 (381)
T TIGR02460        50 GKTAIVVPVKNEKLHL----LEGVLSGIPHEC--PIIIVSNSKREPPDRFKMEVDLIRHFSNLTHRKIIIIHQKDPALAE  123 (381)
T ss_pred             hCcEEEEEcCCCchhH----HhhHhhcCCCCC--eEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHH
Confidence            3689999999998443    444444444444  7888888764   2211  1145555543233455554311     


Q ss_pred             -----------------CCCHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674         339 -----------------REGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIY  380 (439)
Q Consensus       339 -----------------~~g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~  380 (439)
                                       +.|++.++-.|+-.|+   .+||-|+|+|..++ +.+.+.++.+.
T Consensus       124 Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiP-GaV~EYvk~yA  184 (381)
T TIGR02460       124 AFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFP-GAVNEYVKIYA  184 (381)
T ss_pred             HHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCC-chHHHHHHHHH
Confidence                             1367777777776554   69999999998875 44555554443

This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.

>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional

Probab=96.17  E-value=0.052  Score=50.89  Aligned_cols=105  Identities=12%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCC---hhhH--HHHHHHHHHHcCCcEEEEEcCC-----
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS---KADL--DQKLEDYIQRFNGKVRLIRNTE-----  338 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~---d~t~--~~~~~~~~~~~~~~v~~i~~~~-----  338 (439)
                      -...||||+.||....    |+.++.--+.+.  -||||.|++.   |...  .+.++.+..-....+.+++...     
T Consensus        51 ~~mAIVVP~KdE~l~l----leGVL~gIPh~c--~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~r~~i~vHQkDp~la~  124 (393)
T PRK14503         51 GRMAIVVPVKNERLKL----LEGVLKGIPHEC--PIIVVSNSKREPPDRFKLEVDLVRHFYRLTQRPIIIVHQKDPGLAE  124 (393)
T ss_pred             hCcEEEEEcCCCchhH----HhhHhhcCCCCC--eEEEEeCCCCCCchHHHHHHHHHHHHHhhhcCceEEEEcCCHHHHH
Confidence            3689999999998443    444454444444  7888887754   2211  1145555543323455554311     


Q ss_pred             -----------------CCCHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674         339 -----------------REGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIY  380 (439)
Q Consensus       339 -----------------~~g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~  380 (439)
                                       +.|++.++-.|+-.|+   .+||-|+|+|..++ +.+.+.++.+.
T Consensus       125 Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiP-GaV~EYvk~yA  185 (393)
T PRK14503        125 ALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIP-GAVNEYVKIYA  185 (393)
T ss_pred             HHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCC-chHHHHHHHHH
Confidence                             1367777777766554   69999999998875 44555554443

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=96.04  E-value=0.071  Score=54.07  Aligned_cols=124  Identities=13%  Similarity=0.168  Sum_probs=84.8

Q ss_pred             CCCCceEEEEEecCC-ChhHHHHHHHHHHhcCC-cCCcceEEEEeCCC-Chh----hHHHHHHHHHHHcC-CcEEEEEcC
Q psy8674         266 LDLPKASVILVFHNE-GFSSLMRTVHSIIKRTP-AQYLEEIILVDDFS-SKA----DLDQKLEDYIQRFN-GKVRLIRNT  337 (439)
Q Consensus       266 ~~~p~vsiiip~~n~-~~~~l~~~l~sl~~q~~-~~~~~eiivvdd~s-~d~----t~~~~~~~~~~~~~-~~v~~i~~~  337 (439)
                      .....|.||||..++ . +.+.+-|+...+-.. ++....++||..++ .|.    .+.+.+.++..+++ .++.++...
T Consensus       244 ~~~~~V~iIvPl~~r~~-~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~  322 (499)
T PF05679_consen  244 TESTRVHIIVPLSGREA-DWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVK  322 (499)
T ss_pred             cCCCEEEEEEEecCccH-HHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEec
Confidence            345789999999999 6 788777776554321 12223555555544 222    12336677777764 368888887


Q ss_pred             -CCCCHHHHHHHHHhhcC-CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeee
Q psy8674         338 -EREGLIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       338 -~~~g~~~a~n~g~~~a~-~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~  391 (439)
                       .++..+.++..|++... .++++|+|.|..+++++|.+.-..-..+ ..+-.|++
T Consensus       323 ~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g-~qvy~PI~  377 (499)
T PF05679_consen  323 TGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPG-KQVYFPIV  377 (499)
T ss_pred             CCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcC-cEEEEeee
Confidence             88889999999998665 5688889999999999999876554433 23444544

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

>KOG2977|consensus

Probab=95.48  E-value=0.034  Score=50.34  Aligned_cols=65  Identities=20%  Similarity=0.270  Sum_probs=50.7

Q ss_pred             hhHHHHHHHHhcC-CcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHh
Q psy8674           2 LDKKLEDYIERFN-GKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY   66 (439)
Q Consensus         2 ~~~~l~~~~~~~~-~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~   66 (439)
                      +.+..-+|..++. ++|+|+...+|+|.++|.-.|+-.++|++++|.|+|---.=--++.+...+.
T Consensus       118 T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al~  183 (323)
T KOG2977|consen  118 TVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQKILFADADGATKFADLEKLEKALN  183 (323)
T ss_pred             HHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCceEEEEcCCCCccCCCHHHHHHHHH
Confidence            3455556666665 7999999999999999999999999999999999998642222455555555

>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]

Probab=95.41  E-value=0.27  Score=44.50  Aligned_cols=114  Identities=11%  Similarity=0.019  Sum_probs=72.1

Q ss_pred             EEEEEecCCChhHHHHHHH-HHH---hcCCcCCcceEEEEeCCCChhhHHHHHHHHH---HHcCCcEEEEEcCCCC----
Q psy8674         272 SVILVFHNEGFSSLMRTVH-SII---KRTPAQYLEEIILVDDFSSKADLDQKLEDYI---QRFNGKVRLIRNTERE----  340 (439)
Q Consensus       272 siiip~~n~~~~~l~~~l~-sl~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~---~~~~~~v~~i~~~~~~----  340 (439)
                      -|..-.||.+ +.|..... +++   ....+. .+=|-|+++||.|.|.+ .++.+.   ...+.+-.++..+...    
T Consensus         3 fIA~~l~~~~-~iL~~~~~~~ll~li~~LGp~-nv~vSIyE~~S~D~T~~-~L~~L~~~L~~lgv~~~i~~~~~~~~~~~   79 (241)
T PF11735_consen    3 FIAANLYNNE-DILPSLWGDALLELIRFLGPE-NVFVSIYESGSWDGTKE-ALRALDAELDALGVPHSIVLSDITHRDEI   79 (241)
T ss_pred             EEEEEcccCH-hHHHHHHHHHHHHHHHHhCcC-eEEEEEEeCCCCccHHH-HHHHHHHHHHhCCCCeEEEeCCCcccccc
Confidence            3455567776 66654444 433   333332 34678999999999977 888776   4444333443322111    


Q ss_pred             ----------CHHHHHHHHHhhc---------CCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674         341 ----------GLIRTRSRGAKES---------RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP  389 (439)
Q Consensus       341 ----------g~~~a~n~g~~~a---------~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~  389 (439)
                                -.+..+|.+++-.         ..+-|+||| |..+++..+-+|+..-......++|.
T Consensus        80 ~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aCa  146 (241)
T PF11735_consen   80 ERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNRGNYDMACA  146 (241)
T ss_pred             cccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCcccccchhh
Confidence                      1478899998632         246799999 88898888888887766555555554

It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.

>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans

Probab=95.35  E-value=0.045  Score=49.99  Aligned_cols=122  Identities=13%  Similarity=0.176  Sum_probs=75.5

Q ss_pred             eEEEEEe-cCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHH
Q psy8674         271 ASVILVF-HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRG  349 (439)
Q Consensus       271 vsiiip~-~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g  349 (439)
                      +||||.+ |++. +.|.+.|.++.....   ..||+||=++....- . . ..+... ...++++..+.|.  -..+-.-
T Consensus         1 fTvvi~t~~~R~-~~L~~~l~~l~~~~~---l~~IvVvWn~~~~~P-~-~-~~~~~~-~vpV~~~~~~~ns--LnnRF~p   70 (247)
T PF09258_consen    1 FTVVINTSYKRS-DLLKRLLRHLASSPS---LRKIVVVWNNPNPPP-P-S-SKWPST-GVPVRVVRSSRNS--LNNRFLP   70 (247)
T ss_dssp             EEEEEEE-SS-H-HHHHHHHHHHTTSTT---EEEEEEEEE-TS--T-H-H-HHHT----S-EEEEEESSHH--GGGGGS-
T ss_pred             CEEEEEecccch-HHHHHHHHHHHcCCC---CCeEEEEeCCCCCCC-c-c-cccCCC-CceEEEEecCCcc--HHhcCcC
Confidence            4789999 9998 999999999954433   448999976633221 1 1 222222 1368888755541  1233334


Q ss_pred             HhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE--eeeeee--cCCCceEE
Q psy8674         350 AKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV--PVIDGI--DYQTWEFR  402 (439)
Q Consensus       350 ~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~--~~~~~~--~~~~~~~~  402 (439)
                      ....+++.|+.+|+|..++.+.|+......+..+..+|+  |..-..  +...+.|.
T Consensus        71 ~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~  127 (247)
T PF09258_consen   71 DPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYT  127 (247)
T ss_dssp             -TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE
T ss_pred             ccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccc
Confidence            456779999999999999999999999999999887777  322222  34446665

They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=95.01  E-value=0.1  Score=44.00  Aligned_cols=102  Identities=16%  Similarity=0.287  Sum_probs=72.5

Q ss_pred             EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhhc
Q psy8674         275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKES  353 (439)
Q Consensus       275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~a  353 (439)
                      ++. +.. ..|..+++.+.+....    +|+||-..  +.    +.. .....  .++++..+ ...|...++-.|+...
T Consensus        19 ~~i-~g~-~li~~~l~~l~~~~~~----~Ivvv~~~--~~----~~~-~~~~~--~~~~v~~~~~~~G~~~sl~~a~~~~   83 (160)
T PF12804_consen   19 LPI-GGK-PLIERVLEALREAGVD----DIVVVTGE--EE----IYE-YLERY--GIKVVVDPEPGQGPLASLLAALSQL   83 (160)
T ss_dssp             SEE-TTE-EHHHHHHHHHHHHTES----EEEEEEST--HH----HHH-HHTTT--TSEEEE-STSSCSHHHHHHHHHHTS
T ss_pred             eeE-CCc-cHHHHHHHHhhccCCc----eEEEecCh--HH----HHH-HHhcc--CceEEEeccccCChHHHHHHHHHhc
Confidence            444 555 7899999988776422    78887655  22    112 22222  46777665 4689999999999998


Q ss_pred             -CCCEEEEEcCCCc-cCCCChHHHHHhhhcCCCEEEEeee
Q psy8674         354 -RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       354 -~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~  391 (439)
                       ..+.++++..|.. ++++.+..+++.+.+.+..++++..
T Consensus        84 ~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~  123 (160)
T PF12804_consen   84 PSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF  123 (160)
T ss_dssp             TTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             ccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence             8999999999996 5899999999999876666665543

...

>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

Probab=94.72  E-value=0.24  Score=43.87  Aligned_cols=100  Identities=17%  Similarity=0.217  Sum_probs=63.2

Q ss_pred             CceEEEEEecCCCh--hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC-------
Q psy8674         269 PKASVILVFHNEGF--SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-------  339 (439)
Q Consensus       269 p~vsiiip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~-------  339 (439)
                      |.|-||.|+|.+..  ..|.+.-++|..-  +++  -.|||+|+... | . ...++.++.+-..+.+..+.+       
T Consensus         1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lV--p~l--~WIVVEd~~~~-t-~-~va~lL~~sgl~y~HL~~~~~~~~~~~~   73 (223)
T cd00218           1 PTIYVVTPTYARPVQKAELTRLAHTLRLV--PPL--HWIVVEDSEEK-T-P-LVAELLRRSGLMYTHLNAKTPSDPTWLK   73 (223)
T ss_pred             CeEEEECCCCccchhhHHHHHHHHHHhcC--Cce--EEEEEeCCCCC-C-H-HHHHHHHHcCCceEEeccCCCCCcccCC
Confidence            46889999998751  4455555555532  355  88999998732 1 1 334444444434444433322       


Q ss_pred             -CCHHHHHHHHHhhcC-------CCEEEEEcCCCccCCCChHHHH
Q psy8674         340 -EGLIRTRSRGAKESR-------GEVIVFLDAHCEVGLNWLPPLL  376 (439)
Q Consensus       340 -~g~~~a~n~g~~~a~-------~d~i~~ld~D~~~~~~~l~~l~  376 (439)
                       .| ...+|.|++..+       .-++.|.|+|..++-..+++|-
T Consensus        74 ~rg-~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR  117 (223)
T cd00218          74 PRG-VEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR  117 (223)
T ss_pred             ccc-HHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence             33 467999987542       3588999999988877777743

Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=94.56  E-value=0.29  Score=50.69  Aligned_cols=105  Identities=10%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCC---hhhH--HHHHHHHHHHcCCcEEEEEcC------
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS---KADL--DQKLEDYIQRFNGKVRLIRNT------  337 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~---d~t~--~~~~~~~~~~~~~~v~~i~~~------  337 (439)
                      -+..||||+.||....    |+.++.--+.+.  -||||.|++.   |...  .+.++.+..-....+.+++..      
T Consensus        55 ~~~aivvp~k~e~~~~----~~gvl~~ip~~c--~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~~~~~~vhq~dp~~a~  128 (694)
T PRK14502         55 KKMAIVLPIKDEDLKV----FEGVLSGIPHDC--LMIVISNSSKQEVDNFKNEKDIVNRFCRITHRQAIVVHQKNPELAN  128 (694)
T ss_pred             hCcEEEEEcCCCchhH----HhhHhhcCCCCC--eEEEEeCCCCCchHHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHH
Confidence            3689999999998333    444454444444  7888877764   3211  114555554332345555431      


Q ss_pred             ----------------CCCCHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674         338 ----------------EREGLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIY  380 (439)
Q Consensus       338 ----------------~~~g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~  380 (439)
                                      -+.|++.++-.|+-.|+   .+||-|+|+|..++ +.+.+.++.+.
T Consensus       129 a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~p-g~v~ey~~~ya  189 (694)
T PRK14502        129 AIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIP-GAVWEYAKHFA  189 (694)
T ss_pred             HHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCC-chHHHHHHHHH
Confidence                            11467777777776655   69999999998875 44555554443

>KOG1476|consensus

Probab=94.52  E-value=0.34  Score=44.69  Aligned_cols=104  Identities=15%  Similarity=0.183  Sum_probs=65.8

Q ss_pred             CCceEEEEEecCCCh--hHHHHHHHHHHhcCCcCCcceEEEEeCCC-ChhhHHHHHHHHHHHcCCcEEEEEcCCCCCH--
Q psy8674         268 LPKASVILVFHNEGF--SSLMRTVHSIIKRTPAQYLEEIILVDDFS-SKADLDQKLEDYIQRFNGKVRLIRNTEREGL--  342 (439)
Q Consensus       268 ~p~vsiiip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~--  342 (439)
                      .|.|-||.|+|.+.-  ..|.+.-++|.. . +++  ..|||+||+ ...    ....+.++.+-..+++..+...+.  
T Consensus        86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~-V-~nL--hWIVVEd~~~~~p----~v~~~L~rtgl~ythl~~~t~~~~~~  157 (330)
T KOG1476|consen   86 LPTIIVVTPTYVRPVQAAELTRLANTLRL-V-PNL--HWIVVEDGEGTTP----EVSGILRRTGLPYTHLVHKTPMGYKA  157 (330)
T ss_pred             CccEEEEcccccchhHHHHHHHHHHHHhh-c-CCe--eEEEEecCCCCCH----HHHHHHHHcCCceEEEeccCCCCCcc
Confidence            688999999999861  344444455543 2 366  889999995 222    334444444434555555555442  


Q ss_pred             ---HHHHHHHHhhcC---------CCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674         343 ---IRTRSRGAKESR---------GEVIVFLDAHCEVGLNWLPPLLAPIY  380 (439)
Q Consensus       343 ---~~a~n~g~~~a~---------~d~i~~ld~D~~~~~~~l~~l~~~~~  380 (439)
                         -..+|.|++..+         .-++.|-|+|...+-+..++ +..+.
T Consensus       158 ~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v~  206 (330)
T KOG1476|consen  158 RRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNVK  206 (330)
T ss_pred             ccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhccc
Confidence               367888887543         45888889998888776666 44333

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=94.52  E-value=0.36  Score=41.63  Aligned_cols=102  Identities=16%  Similarity=0.195  Sum_probs=67.9

Q ss_pred             CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhhcC--C
Q psy8674         279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKESR--G  355 (439)
Q Consensus       279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~a~--~  355 (439)
                      +.. ..|..+++.+.....  .  +|+||-+... .    .........  .+.++..+ ...|...+...|++.+.  .
T Consensus        24 ~g~-~li~~~i~~l~~~~~--~--~i~vv~~~~~-~----~~~~~~~~~--~~~~~~~~~~~~G~~~~i~~al~~~~~~~   91 (186)
T cd04182          24 DGK-PLLRHALDAALAAGL--S--RVIVVLGAEA-D----AVRAALAGL--PVVVVINPDWEEGMSSSLAAGLEALPADA   91 (186)
T ss_pred             CCe-eHHHHHHHHHHhCCC--C--cEEEECCCcH-H----HHHHHhcCC--CeEEEeCCChhhCHHHHHHHHHHhccccC
Confidence            344 688888888876521  1  6766643321 1    112222222  35545443 33688889999999886  7


Q ss_pred             CEEEEEcCCCc-cCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674         356 EVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVID  392 (439)
Q Consensus       356 d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~  392 (439)
                      ++++++.+|.- +++..+..+++.+...+..+++|..+
T Consensus        92 ~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~~~  129 (186)
T cd04182          92 DAVLILLADQPLVTAETLRALIDAFREDGAGIVAPVYQ  129 (186)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Confidence            99999999995 68899999999887666667777654

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>KOG2571|consensus

Probab=94.49  E-value=0.032  Score=58.61  Aligned_cols=135  Identities=15%  Similarity=0.079  Sum_probs=76.3

Q ss_pred             HhhhhhccC--cEEEEecCCcccCCCchHHHHHHHhcCCCeE-eeeeeecccCCCcccccccCCCCcccccccccccccc
Q psy8674          33 SRGAKESRG--EVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM-TVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKE  109 (439)
Q Consensus        33 N~G~~~A~g--~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (439)
                      +........  +||+++|+|+.+.|+.|-.|++.++.++..+ ++|.+....+.-          ......|....    
T Consensus       431 y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~I~~~~~~w----------~v~~Q~FEY~I----  496 (862)
T KOG2571|consen  431 YTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGRILNKGGSW----------VVAYQNFEYAI----  496 (862)
T ss_pred             HHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceeccccccCCCce----------EEeHHHHHHHH----
Confidence            334444443  4779999999999999999999999888754 444322211100          00001111110    


Q ss_pred             CCCchHHHhhccCCCCCccCccccceEEEEeHHHHHH-h-----C-CCCC---CCCCccchhhHHHHHHHHhCCcEEEec
Q psy8674         110 NELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLE-L-----G-GYDP---GLLVWGGENFELSFKIWMCGGSIEWVP  179 (439)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~-i-----G-gfde---~~~~~~~ED~Dl~~Rl~~~G~~i~~~p  179 (439)
                          . ....+...+-..-+..++||.-++|-+++.. -     | .+.+   ..+.--+||-=||.++..+||.+.|++
T Consensus       497 ----s-h~l~Ka~ESvFG~VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~a  571 (862)
T KOG2571|consen  497 ----S-HNLQKATESVFGCVSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYVA  571 (862)
T ss_pred             ----H-HHHHHhhhhhceeEEecCchhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeeec
Confidence                0 0011111112222345578777788755422 1     1 0111   011112699999999999999999999


Q ss_pred             ccceecc
Q psy8674         180 CSRIVSL  186 (439)
Q Consensus       180 ~~~v~H~  186 (439)
                      .+...-.
T Consensus       572 ~s~a~t~  578 (862)
T KOG2571|consen  572 ASDAETE  578 (862)
T ss_pred             ccccccc
Confidence            9887544

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=94.40  E-value=0.37  Score=41.83  Aligned_cols=100  Identities=18%  Similarity=0.220  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHHHHHHHHh-hcCCCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAK-ESRGEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~a~n~g~~-~a~~d~i~~  360 (439)
                      ..|...++.+.+... +   +|+||-+...+.    ..+.+...+  .+.++..+. ..|...+...|++ ....+++++
T Consensus        26 pll~~~i~~l~~~~~-~---~iivv~~~~~~~----~~~~~~~~~--~v~~v~~~~~~~g~~~si~~~l~~~~~~~~vlv   95 (188)
T TIGR03310        26 TILEHVVDNALRLFF-D---EVILVLGHEADE----LVALLANHS--NITLVHNPQYAEGQSSSIKLGLELPVQSDGYLF   95 (188)
T ss_pred             eHHHHHHHHHHHcCC-C---cEEEEeCCcHHH----HHHHhccCC--CeEEEECcChhcCHHHHHHHHhcCCCCCCEEEE
Confidence            688888888876432 1   666664433221    333333222  466665443 2577788888887 456789999


Q ss_pred             EcCCCc-cCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674         361 LDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVID  392 (439)
Q Consensus       361 ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~  392 (439)
                      +++|.- ++++.+..+++.+...+..+++|...
T Consensus        96 ~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~  128 (188)
T TIGR03310        96 LLGDQPFVTPDIIQLLLEAFALKNDEIVVPLYK  128 (188)
T ss_pred             EeCCcCCCCHHHHHHHHHHHHhCCCcEEEeecC
Confidence            999985 58899999999887777666776544

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []

Probab=94.37  E-value=0.11  Score=48.36  Aligned_cols=112  Identities=13%  Similarity=0.215  Sum_probs=67.9

Q ss_pred             ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHH----HHcCCcEEEEEcC--CCCCHH
Q psy8674         270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYI----QRFNGKVRLIRNT--EREGLI  343 (439)
Q Consensus       270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~----~~~~~~v~~i~~~--~~~g~~  343 (439)
                      .|.||||+-........+.-.+++    ..+  .+|||-|+...+.+. +.+-+-    .+.+ -.+++-.+  -.+.-.
T Consensus         9 ~~divi~~~~~~l~~~~~~wr~~~----~~~--hliiv~d~~~~~~~~-~p~g~~~~~y~~~d-i~~~lg~~~~i~~~~~   80 (348)
T PF03214_consen    9 EVDIVIPALRPNLTDFLEEWRPFF----SPY--HLIIVQDPDPNEEIK-VPEGFDYEVYNRND-IERVLGAKTLIPFKGD   80 (348)
T ss_pred             cccEEeecccccHHHHHHHHHHhh----cce--eEEEEeCCCcccccc-CCcccceeeecHhh-HHhhcCCccccccccc
Confidence            589999999865212222223333    334  899999887654332 222110    0000 00111111  112346


Q ss_pred             HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674         344 RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP  389 (439)
Q Consensus       344 ~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~  389 (439)
                      +++|.|.-.++.+|++++|+|+.+..++.-..++.+.++.....+|
T Consensus        81 a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~  126 (348)
T PF03214_consen   81 ACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTP  126 (348)
T ss_pred             chhhhHhhhcccceEEEEccccccccCCccceehhhhccceeeecc
Confidence            7899999999999999999999998888888888887765544443

It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction

>KOG3588|consensus

Probab=94.32  E-value=0.5  Score=44.53  Aligned_cols=108  Identities=14%  Similarity=0.140  Sum_probs=78.1

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCC-ChhhHH-HHHHHHHHHcCCcEEEEEcCCCCCHH
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFS-SKADLD-QKLEDYIQRFNGKVRLIRNTEREGLI  343 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s-~d~t~~-~~~~~~~~~~~~~v~~i~~~~~~g~~  343 (439)
                      .+.|.|.+|+|...+. ..+.+...++......+.  +++||-=|+ .++... +.+..+...+. ++.++.....+..+
T Consensus       226 i~~pgih~i~pl~gr~-~~f~rf~q~~c~~~d~~l--~l~vv~f~~se~e~ak~e~~tslra~f~-~~q~l~lngeFSRa  301 (494)
T KOG3588|consen  226 IEDPGIHMIMPLRGRA-AIFARFAQSICARGDDRL--ALSVVYFGYSEDEMAKRETITSLRASFI-PVQFLGLNGEFSRA  301 (494)
T ss_pred             ccCCCceEEEeccchH-HHhhhhhHHHhccCCCce--EEEEEEecCCChHHHhhhHHHHHhhcCC-ceEEecccchhhhh
Confidence            4667899999999999 889998888776555555  666655454 333221 24445666665 57777666667889


Q ss_pred             HHHHHHHhhcCCCE-EEEEcCCCccCCCChHHHHH
Q psy8674         344 RTRSRGAKESRGEV-IVFLDAHCEVGLNWLPPLLA  377 (439)
Q Consensus       344 ~a~n~g~~~a~~d~-i~~ld~D~~~~~~~l~~l~~  377 (439)
                      .|+..|.+.-+.+. +.|+|.|..++.++|...-.
T Consensus       302 ~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~  336 (494)
T KOG3588|consen  302 KALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRL  336 (494)
T ss_pred             HHHHhhHHHhccceeEEEeccceeehHHHHHHHhh
Confidence            99999999887665 55679999999888877643

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=93.92  E-value=1.1  Score=40.77  Aligned_cols=103  Identities=14%  Similarity=0.121  Sum_probs=70.7

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      ++|+|+.+  .|.-+|..|......    +|+||-.--+..+..+.+-. -+.+..+++++..++..|.+.|.-.|-...
T Consensus        25 LlpV~~KP--mi~y~l~~L~~aGI~----dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~Q~~p~GlA~Av~~a~~fv   97 (286)
T COG1209          25 LLPVYDKP--MIYYPLETLMLAGIR----DILIVVGPEDKPTFKELLGD-GSDFGVDITYAVQPEPDGLAHAVLIAEDFV   97 (286)
T ss_pred             cceecCcc--hhHhHHHHHHHcCCc----eEEEEecCCchhhhhhhhcC-ccccCcceEEEecCCCCcHHHHHHHHHhhc
Confidence            78999975  888899988875543    67666443232222211111 123445899999999999999999999999


Q ss_pred             CCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         354 RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       354 ~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                      ..+=++++=.|..+.. -+.+++..+.....
T Consensus        98 ~~~~f~l~LGDNi~~~-~l~~~~~~~~~~~~  127 (286)
T COG1209          98 GDDDFVLYLGDNIFQD-GLSELLEHFAEEGS  127 (286)
T ss_pred             CCCceEEEecCceecc-ChHHHHHHHhccCC
Confidence            8555555556666666 78888888876333

>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function

Probab=93.91  E-value=0.08  Score=48.38  Aligned_cols=47  Identities=21%  Similarity=0.205  Sum_probs=34.6

Q ss_pred             hhHHHHhhhhhccC---cEEEEecCCccc-CCCchHHHHHHHhcCCCeEeeeeee
Q psy8674          28 LIRTRSRGAKESRG---EVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVID   78 (439)
Q Consensus        28 ~a~arN~G~~~A~g---~~i~flD~D~~~-~~~~l~~l~~~~~~~~~~~v~~~~~   78 (439)
                      +|+|||.-+..|-+   +|+++||+|++- +|+.|+.|    .....++++|.+.
T Consensus       127 mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dl----i~~~kdIivPn~~  177 (269)
T PF03452_consen  127 MARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDL----IAHDKDIIVPNCW  177 (269)
T ss_pred             HHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHH----HhCCCCEEcccee
Confidence            58999999888754   999999999996 55554444    4456666666553

These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=93.80  E-value=0.7  Score=41.50  Aligned_cols=100  Identities=11%  Similarity=0.104  Sum_probs=66.9

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      ++|.-+.  ..|..+|+++.+...  .  +|+||-... .+    .+.++...+  ++.++..+...|.+.+.-.|+...
T Consensus        20 l~~v~gk--pli~~~i~~l~~~~i--~--~i~iv~~~~-~~----~i~~~~~~~--~~~~~~~~~~~g~~~ai~~a~~~~   86 (229)
T cd02540          20 LHPLAGK--PMLEHVLDAARALGP--D--RIVVVVGHG-AE----QVKKALANP--NVEFVLQEEQLGTGHAVKQALPAL   86 (229)
T ss_pred             cceeCCc--cHHHHHHHHHHhCCC--C--eEEEEECCC-HH----HHHHHhCCC--CcEEEECCCCCCCHHHHHHHHHhh
Confidence            3455454  688899999887442  2  666654322 22    334443332  466676666678888888888876


Q ss_pred             C--CCEEEEEcCCCc-cCCCChHHHHHhhhcCCCEE
Q psy8674         354 R--GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIM  386 (439)
Q Consensus       354 ~--~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~  386 (439)
                      .  .+.++++++|.. +.+..+..+++.+.+.+..+
T Consensus        87 ~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~  122 (229)
T cd02540          87 KDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADV  122 (229)
T ss_pred             ccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcE
Confidence            5  689999999984 57888999998887654433

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>PLN02458 transferase, transferring glycosyl groups

Probab=93.68  E-value=0.43  Score=44.42  Aligned_cols=102  Identities=12%  Similarity=0.126  Sum_probs=64.4

Q ss_pred             CCceEEEEEecC-CC--hhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCC---
Q psy8674         268 LPKASVILVFHN-EG--FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREG---  341 (439)
Q Consensus       268 ~p~vsiiip~~n-~~--~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g---  341 (439)
                      .+.|-||.|||. +.  ...|.+.-++|.. ..+++  -.|||+|++.-..    +.++.++.+-..+.+..+.+..   
T Consensus       111 ~rlIivVTPTY~rR~~Q~a~LTRLahTL~l-Vp~pL--~WIVVEd~~~t~~----va~lLrrsGl~y~HL~~k~~~~~~~  183 (346)
T PLN02458        111 RRLVIIVTPISTKDRYQGVLLRRLANTLRL-VPPPL--LWIVVEGQSDSEE----VSEMLRKTGIMYRHLVFKENFTDPE  183 (346)
T ss_pred             CceEEEECCCCCCcchhHHHHHHHHHHHhc-CCCCc--eEEEEeCCCCCHH----HHHHHHHcCCceEEeccCCCCCCcc
Confidence            456899999997 33  1445555555543 33356  7899998764332    3444444443455554444431   


Q ss_pred             --HHHHHHHHHhhcC----CCEEEEEcCCCccCCCChHHHH
Q psy8674         342 --LIRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLL  376 (439)
Q Consensus       342 --~~~a~n~g~~~a~----~d~i~~ld~D~~~~~~~l~~l~  376 (439)
                        ....+|.|++..+    .-++.|.|+|..++-+.+++|-
T Consensus       184 ~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR  224 (346)
T PLN02458        184 AELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIR  224 (346)
T ss_pred             chhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHh
Confidence              2456999998764    4689999999888877666643

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=93.63  E-value=0.14  Score=45.42  Aligned_cols=88  Identities=13%  Similarity=0.187  Sum_probs=66.3

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC--CCHHHHHHHHHhhcCCCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER--EGLIRTRSRGAKESRGEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~--~g~~~a~n~g~~~a~~d~i~~  360 (439)
                      +.|.++|++|.+....    |++||-+|=-.+    .++.+..+++-..+++.++.-  .+-+..+-.|.+..+++ +++
T Consensus        32 ~ii~~~i~~L~~~gi~----e~vvV~~g~~~~----lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-fii  102 (239)
T COG1213          32 EIIYRTIENLAKAGIT----EFVVVTNGYRAD----LVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-FIL  102 (239)
T ss_pred             EeHHHHHHHHHHcCCc----eEEEEeccchHH----HHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhcCc-EEE
Confidence            6889999999876643    889998776433    677777777756788776532  22345666777788877 788


Q ss_pred             EcCCCccCCCChHHHHHhh
Q psy8674         361 LDAHCEVGLNWLPPLLAPI  379 (439)
Q Consensus       361 ld~D~~~~~~~l~~l~~~~  379 (439)
                      +++|..++|..++.+++.-
T Consensus       103 ~~sD~vye~~~~e~l~~a~  121 (239)
T COG1213         103 VMSDHVYEPSILERLLEAP  121 (239)
T ss_pred             EeCCEeecHHHHHHHHhCc
Confidence            9999999999999998864

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=93.40  E-value=1.5  Score=41.20  Aligned_cols=98  Identities=9%  Similarity=0.176  Sum_probs=65.3

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH---HcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      .+|+++.  ..|...|.++.....    .+|+||-.....+    .++++..   .++.++.++..++..|.+.|...|.
T Consensus        28 Llpv~gk--PmI~~~l~~l~~aGi----~~I~ii~~~~~~~----~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~   97 (292)
T PRK15480         28 LLPIYDK--PMIYYPLSTLMLAGI----RDILIISTPQDTP----RFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGE   97 (292)
T ss_pred             EeEECCE--EHHHHHHHHHHHCCC----CEEEEEecCCchH----HHHHHHcCccccCceeEEEECCCCCCHHHHHHHHH
Confidence            7788887  488888888887543    2777665443222    2333332   2333577777777889999999888


Q ss_pred             hhcCC-CEEEEEcCCCccCCCChHHHHHhhhcC
Q psy8674         351 KESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSD  382 (439)
Q Consensus       351 ~~a~~-d~i~~ld~D~~~~~~~l~~l~~~~~~~  382 (439)
                      ..... ++++ +.+|..+....+..+++.....
T Consensus        98 ~~i~~~~~~l-v~gD~i~~~~~l~~ll~~~~~~  129 (292)
T PRK15480         98 EFIGGDDCAL-VLGDNIFYGHDLPKLMEAAVNK  129 (292)
T ss_pred             HHhCCCCEEE-EECCeeeeccCHHHHHHHHHhC
Confidence            87654 5555 5577777666688888866543

>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=93.09  E-value=0.64  Score=40.79  Aligned_cols=146  Identities=12%  Similarity=0.052  Sum_probs=80.1

Q ss_pred             HHHHHHHHhcCCcEEEEEecCCC-Chh----HHHHhhhhhcc-CcEEEEecCCcccCCCchHHHHHHHhcCC-CeEeeee
Q psy8674           4 KKLEDYIERFNGKVRLIRNTERE-GLI----RTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPV   76 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~~~n~-G~a----~arN~G~~~A~-g~~i~flD~D~~~~~~~l~~l~~~~~~~~-~~~v~~~   76 (439)
                      +.|.+-.+++. .|-.+...+.+ +.+    .+.+-..+... .+|++.+|+|+.+.+.-|...+....... .....+.
T Consensus        39 ~~l~~E~~~y~-Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~  117 (195)
T PF01762_consen   39 EALQEEAEKYG-DILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGG  117 (195)
T ss_pred             HHhhhhhhhcC-ceEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccc
Confidence            33444455565 56556655443 232    45555555555 79999999999998777666666551111 1122111


Q ss_pred             eecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCC
Q psy8674          77 IDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLV  156 (439)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~  156 (439)
                      +..-.. .           .......|.....             .......-++..|++.++++++...+...-.....
T Consensus       118 ~~~~~~-~-----------~r~~~~kw~v~~~-------------~y~~~~yP~y~~G~~yvls~~~v~~i~~~~~~~~~  172 (195)
T PF01762_consen  118 CIKNGP-P-----------IRDPSSKWYVSEE-------------EYPDDYYPPYCSGGGYVLSSDVVKRIYKASSHTPF  172 (195)
T ss_pred             cccCCc-c-----------ccccccCceeeee-------------ecccccCCCcCCCCeEEecHHHHHHHHHHhhcCCC
Confidence            111000 0           0001112221110             01111233466899999999999888754444444


Q ss_pred             ccchhhHHHHHHHHhCCcE
Q psy8674         157 WGGENFELSFKIWMCGGSI  175 (439)
Q Consensus       157 ~~~ED~Dl~~Rl~~~G~~i  175 (439)
                      ...||+-+++=+.+.|.+.
T Consensus       173 ~~~eDv~iGi~~~~~~i~~  191 (195)
T PF01762_consen  173 FPLEDVFIGILAEKLGIKP  191 (195)
T ss_pred             CCchHHHHHHHHHHCCCCc
Confidence            4569999998888888763

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane

>PLN02195 cellulose synthase A

Probab=93.06  E-value=0.26  Score=52.64  Aligned_cols=53  Identities=13%  Similarity=0.124  Sum_probs=45.3

Q ss_pred             CcEEEEEecCCCC-----hhHHHHhhhhhc----cCcEEEEecCCcccCC-CchHHHHHHHhc
Q psy8674          15 GKVRLIRNTEREG-----LIRTRSRGAKES----RGEVIVFLDAHCEVGL-NWLPPLLAPIYS   67 (439)
Q Consensus        15 ~~i~~i~~~~n~G-----~a~arN~G~~~A----~g~~i~flD~D~~~~~-~~l~~l~~~~~~   67 (439)
                      |++.+|..+++.|     .|+|.|.+++.+    .|+||+.||+|..+.+ ++|.+.+-.|..
T Consensus       419 P~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D  481 (977)
T PLN02195        419 PRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMD  481 (977)
T ss_pred             ceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccC
Confidence            4899999998887     489999999855    5999999999998854 799998888874

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=93.06  E-value=0.52  Score=41.19  Aligned_cols=93  Identities=14%  Similarity=0.214  Sum_probs=61.0

Q ss_pred             CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC--CCCHHHHHHHHHhhcCCC
Q psy8674         279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGLIRTRSRGAKESRGE  356 (439)
Q Consensus       279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~g~~~a~n~g~~~a~~d  356 (439)
                      +.. ..|..+++.+. ..    ..+|+||-+..    .+ .+.    ..  .++++....  ..|...+...|++....+
T Consensus        28 ~g~-~ll~~~i~~l~-~~----~~~i~vv~~~~----~~-~~~----~~--~~~~v~~~~~~~~g~~~~i~~~l~~~~~~   90 (193)
T PRK00317         28 NGK-PLIQHVIERLA-PQ----VDEIVINANRN----LA-RYA----AF--GLPVIPDSLADFPGPLAGILAGLKQARTE   90 (193)
T ss_pred             CCE-EHHHHHHHHHh-hh----CCEEEEECCCC----hH-HHH----hc--CCcEEeCCCCCCCCCHHHHHHHHHhcCCC
Confidence            445 68888888876 21    12777774322    11 121    11  244554432  367778888899888889


Q ss_pred             EEEEEcCCCc-cCCCChHHHHHhhhcCCCEEEE
Q psy8674         357 VIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTV  388 (439)
Q Consensus       357 ~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~  388 (439)
                      +++++++|.- ++++.+..+++.+.+....+++
T Consensus        91 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  123 (193)
T PRK00317         91 WVLVVPCDTPFIPPDLVARLAQAAGKDDADVAW  123 (193)
T ss_pred             eEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE
Confidence            9999999996 5899999999987655544443

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=92.97  E-value=2  Score=38.00  Aligned_cols=101  Identities=15%  Similarity=0.174  Sum_probs=62.8

Q ss_pred             EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC
Q psy8674         275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR  354 (439)
Q Consensus       275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~  354 (439)
                      +|..+ . ..|..+|+++......    +|+||-+...+. ..+.+.... ..+..+.++..+...|.+.+...++....
T Consensus        24 l~v~g-~-pli~~~l~~l~~~g~~----~i~vv~~~~~~~-i~~~~~~~~-~~~~~i~~~~~~~~~g~~~al~~~~~~~~   95 (217)
T cd04181          24 LPIAG-K-PILEYIIERLARAGID----EIILVVGYLGEQ-IEEYFGDGS-KFGVNIEYVVQEEPLGTAGAVRNAEDFLG   95 (217)
T ss_pred             cEECC-e-eHHHHHHHHHHHCCCC----EEEEEeccCHHH-HHHHHcChh-hcCceEEEEeCCCCCccHHHHHHhhhhcC
Confidence            34444 4 6888899988875422    666666543221 221222110 02234666655566788899999988877


Q ss_pred             CCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         355 GEVIVFLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       355 ~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                      .+.++++++|..+..+ +.++++.....+.
T Consensus        96 ~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~  124 (217)
T cd04181          96 DDDFLVVNGDVLTDLD-LSELLRFHREKGA  124 (217)
T ss_pred             CCCEEEEECCeecCcC-HHHHHHHHHhcCC
Confidence            7899999999987665 6666665554443

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=92.85  E-value=2.2  Score=37.87  Aligned_cols=99  Identities=12%  Similarity=0.122  Sum_probs=61.9

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      ++|.-+.  ..|...|+.+.+....    +|+|+-+... +    .+.++...   ++..+.+.......|.+.+.-.++
T Consensus        23 ll~i~g~--pli~~~l~~l~~~g~~----~v~vv~~~~~-~----~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~   91 (223)
T cd06915          23 LAPVAGR--PFLEYLLEYLARQGIS----RIVLSVGYLA-E----QIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNAL   91 (223)
T ss_pred             ccEECCc--chHHHHHHHHHHCCCC----EEEEEcccCH-H----HHHHHHcCccccCceEEEEECCCCCcchHHHHHHH
Confidence            3444454  5888888888765321    6666654332 2    22222221   122344444456678888888888


Q ss_pred             hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                      +....+.++++++|..++ ..+..+++.+.....
T Consensus        92 ~~~~~~~~lv~~~D~~~~-~~~~~~l~~~~~~~~  124 (223)
T cd06915          92 PKLPEDQFLVLNGDTYFD-VDLLALLAALRASGA  124 (223)
T ss_pred             hhcCCCCEEEEECCcccC-CCHHHHHHHHHhCCC
Confidence            887778899999999774 457888887765444

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=92.84  E-value=1.3  Score=38.61  Aligned_cols=105  Identities=16%  Similarity=0.186  Sum_probs=66.3

Q ss_pred             CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHHHHHHHHhhc---C
Q psy8674         279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKES---R  354 (439)
Q Consensus       279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~a~n~g~~~a---~  354 (439)
                      +.. ..|..+++.++....    .+|+||-+... .... .+...... ...+.++..+. ..|.+.+.-.|++.+   .
T Consensus        24 ~g~-~ll~~~i~~~~~~~~----~~i~vv~~~~~-~~~~-~~~~~~~~-~~~~~~~~~~~~~~G~~~si~~gl~~~~~~~   95 (190)
T TIGR03202        24 GET-TLGSASLKTALSSRL----SKVIVVIGEKY-AHLS-WLDPYLLA-DERIMLVCCRDACEGQAHSLKCGLRKAEAMG   95 (190)
T ss_pred             CCc-cHHHHHHHHHHhCCC----CcEEEEeCCcc-chhh-hhhHhhhc-CCCeEEEECCChhhhHHHHHHHHHHHhccCC
Confidence            445 688888877655321    27777765432 2122 22221111 12355554333 357788888898875   4


Q ss_pred             CCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEeee
Q psy8674         355 GEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       355 ~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~~  391 (439)
                      .++++++++|.-+ +++.+..|++.+...+..++++..
T Consensus        96 ~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~~~~  133 (190)
T TIGR03202        96 ADAVVILLADQPFLTADVINALLALAKRRPDDYVAASF  133 (190)
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEEEec
Confidence            7999999999985 799999999988766655556544

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=92.45  E-value=0.6  Score=42.50  Aligned_cols=101  Identities=14%  Similarity=0.052  Sum_probs=70.1

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC---CcEEEEEcCCCCCHHHHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN---GKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~---~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      .+|..+.. ..|...|+.+......    ++|+|-.+....    .+.++.....   ..+.++..+...|.+.|.-.+.
T Consensus        24 ll~i~g~~-pli~~~l~~l~~~g~~----~ii~V~~~~~~~----~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~   94 (248)
T PF00483_consen   24 LLPIGGKY-PLIDYVLENLANAGIK----EIIVVVNGYKEE----QIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQAL   94 (248)
T ss_dssp             GSEETTEE-EHHHHHHHHHHHTTCS----EEEEEEETTTHH----HHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTH
T ss_pred             cceecCCC-cchhhhhhhhcccCCc----eEEEEEeecccc----cccccccccccccccceeeecccccchhHHHHHHH
Confidence            45666775 6888899988875432    755555544433    3334433322   2477877788889999999999


Q ss_pred             hhcCCCE----EEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         351 KESRGEV----IVFLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       351 ~~a~~d~----i~~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                      .....+.    ++++.+|..++. .+..+++...+...
T Consensus        95 ~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~  131 (248)
T PF00483_consen   95 DFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNA  131 (248)
T ss_dssp             HHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSS
T ss_pred             HHhhhccccceEEEEeccccccc-hhhhHHHhhhcccc
Confidence            9888665    899999998877 67888877765444

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=92.38  E-value=1.6  Score=39.47  Aligned_cols=103  Identities=18%  Similarity=0.232  Sum_probs=60.2

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      .+|..+.  ..|..+|+++..+...    +|+||-....+ ...+.+.++....+..+.+.......|.+.+...+....
T Consensus        25 llpv~g~--pli~~~l~~l~~~g~~----~v~iv~~~~~~-~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~   97 (233)
T cd06425          25 LVEFCNK--PMIEHQIEALAKAGVK----EIILAVNYRPE-DMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLL   97 (233)
T ss_pred             cCeECCc--chHHHHHHHHHHCCCc----EEEEEeeeCHH-HHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHh
Confidence            3455554  5888999998876432    56666543332 222234333122221233322345578888888888776


Q ss_pred             CC--CEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         354 RG--EVIVFLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       354 ~~--d~i~~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                      +.  +-++++++|.....+ +..+++.....+.
T Consensus        98 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~  129 (233)
T cd06425          98 GDDDEPFFVLNSDVICDFP-LAELLDFHKKHGA  129 (233)
T ss_pred             ccCCCCEEEEeCCEeeCCC-HHHHHHHHHHcCC
Confidence            53  446777999877655 6888887765444

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=92.38  E-value=0.46  Score=39.98  Aligned_cols=68  Identities=16%  Similarity=0.330  Sum_probs=52.9

Q ss_pred             HHHHHHhcCCcEEEEEec-CCCChhHHHHhhhhhc-cCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeee
Q psy8674           6 LEDYIERFNGKVRLIRNT-EREGLIRTRSRGAKES-RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVP   75 (439)
Q Consensus         6 l~~~~~~~~~~i~~i~~~-~n~G~a~arN~G~~~A-~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~   75 (439)
                      +.+++.+.  .++++.++ ...|...+.=.|+... ..+.++++.+|.. ++++.++.+++.+++++..++++
T Consensus        51 ~~~~~~~~--~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~  121 (160)
T PF12804_consen   51 IYEYLERY--GIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVP  121 (160)
T ss_dssp             HHHHHTTT--TSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred             HHHHHhcc--CceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEE
Confidence            44444444  48888865 4689999999999999 8999999999996 69999999999998766655543

...

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=92.28  E-value=2  Score=40.19  Aligned_cols=99  Identities=9%  Similarity=0.131  Sum_probs=63.3

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH---HcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      .+|+++.  ..|.-.|..+......    +|+||-.....+    .++++..   .++-++.++..++..|.+.|.-.|.
T Consensus        24 Llpv~gk--PmI~~~L~~l~~aGi~----~I~iv~~~~~~~----~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~   93 (286)
T TIGR01207        24 LLPIYDK--PMIYYPLSTLMLAGIR----DILIISTPQDTP----RFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGE   93 (286)
T ss_pred             eeEECCE--EhHHHHHHHHHHCCCC----EEEEEecCCcHH----HHHHHhccccccCceEEEEEccCCCCHHHHHHHHH
Confidence            6788886  5888888888875432    676664332222    2233332   2233566676667789999999998


Q ss_pred             hhcCCCEEEEEcCCCccCCCChHHHHHhhhcC
Q psy8674         351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD  382 (439)
Q Consensus       351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~  382 (439)
                      .....+-++++.+|..+....+..+++.....
T Consensus        94 ~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~  125 (286)
T TIGR01207        94 DFIGGDPSALVLGDNIFYGHDLSDLLKRAAAR  125 (286)
T ss_pred             HHhCCCCEEEEECCEeccccCHHHHHHHHHhc
Confidence            87664434444588777667788888766443

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>PLN02189 cellulose synthase

Probab=92.13  E-value=1.2  Score=48.08  Aligned_cols=93  Identities=8%  Similarity=0.147  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHh--cCCcCCcceEEEEeCCCC--------hhhHHHHHHHHHH----------HcCCcEEEEEcCCCCC-
Q psy8674         283 SSLMRTVHSIIK--RTPAQYLEEIILVDDFSS--------KADLDQKLEDYIQ----------RFNGKVRLIRNTEREG-  341 (439)
Q Consensus       283 ~~l~~~l~sl~~--q~~~~~~~eiivvdd~s~--------d~t~~~~~~~~~~----------~~~~~v~~i~~~~~~g-  341 (439)
                      +.++..++++.+  +.++.   |--+.+||+.        ..+   +++-+.+          +.| .+.++..+++.| 
T Consensus       439 Ee~kvRI~~l~a~~~~~p~---~~~~m~dGt~W~g~~~~dHp~---IiQVll~~~~~~d~~g~~lP-~LVYVSREKrPg~  511 (1040)
T PLN02189        439 EEFKVRINAIVAKAQKVPP---EGWIMQDGTPWPGNNTRDHPG---MIQVFLGHSGGHDTEGNELP-RLVYVSREKRPGF  511 (1040)
T ss_pred             HHHHHHHHHHHhhcCccCC---ccceeccCccCCCCCCCCCHH---HHHHHhcCCCCccccccccc-eeEEEeccCCCCC
Confidence            555666666653  23332   4466788871        222   3443332          122 477887777655 


Q ss_pred             ----HHHHHHHHHh----hcCCCEEEEEcCCCccC-CCChHHHHHhhhcC
Q psy8674         342 ----LIRTRSRGAK----ESRGEVIVFLDAHCEVG-LNWLPPLLAPIYSD  382 (439)
Q Consensus       342 ----~~~a~n~g~~----~a~~d~i~~ld~D~~~~-~~~l~~l~~~~~~~  382 (439)
                          +++|+|..++    .++++||+.+|.|..+. +..+.+.+-.|.+.
T Consensus       512 ~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp  561 (1040)
T PLN02189        512 QHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDP  561 (1040)
T ss_pred             CcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCC
Confidence                8999999995    45799999999999985 69999999988875

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=92.00  E-value=1.1  Score=38.58  Aligned_cols=94  Identities=14%  Similarity=0.179  Sum_probs=64.8

Q ss_pred             CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhhcCCCE
Q psy8674         279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKESRGEV  357 (439)
Q Consensus       279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~a~~d~  357 (439)
                      +.. ..|..+++.+... .  .  +|+||-+.....        + ...  .++++..+ ...|...+...|++....++
T Consensus        24 ~g~-~ll~~~i~~l~~~-~--~--~iivv~~~~~~~--------~-~~~--~~~~v~~~~~~~G~~~si~~~l~~~~~~~   86 (181)
T cd02503          24 GGK-PLLEHVLERLKPL-V--D--EVVISANRDQER--------Y-ALL--GVPVIPDEPPGKGPLAGILAALRAAPADW   86 (181)
T ss_pred             CCE-EHHHHHHHHHHhh-c--C--EEEEECCCChHH--------H-hhc--CCcEeeCCCCCCCCHHHHHHHHHhcCCCe
Confidence            345 6888888887753 1  2  677775433211        1 111  35666554 35788899999999988999


Q ss_pred             EEEEcCCCc-cCCCChHHHHHhhhcCCCEEEEee
Q psy8674         358 IVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       358 i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                      ++++.+|.- ++++.+..+++.+ +.+..+++|.
T Consensus        87 vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~  119 (181)
T cd02503          87 VLVLACDMPFLPPELLERLLAAA-EEGADAVVPK  119 (181)
T ss_pred             EEEEeCCcCCCCHHHHHHHHHhh-ccCCCEEEEe
Confidence            999999997 5899999999888 4444555554

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>PLN02893 Cellulose synthase-like protein

Probab=91.87  E-value=0.46  Score=49.68  Aligned_cols=55  Identities=7%  Similarity=-0.019  Sum_probs=46.5

Q ss_pred             cCCcEEEEEcCCC-----CCHHHHHHHHHhh----cCCCEEEEEcCCCcc-CCCChHHHHHhhhcC
Q psy8674         327 FNGKVRLIRNTER-----EGLIRTRSRGAKE----SRGEVIVFLDAHCEV-GLNWLPPLLAPIYSD  382 (439)
Q Consensus       327 ~~~~v~~i~~~~~-----~g~~~a~n~g~~~----a~~d~i~~ld~D~~~-~~~~l~~l~~~~~~~  382 (439)
                      .| .+.++..+++     .-+++|+|.+++.    ++|++|+.+|+|... .|+.+.+.+-.|.+.
T Consensus       263 lP-~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp  327 (734)
T PLN02893        263 MP-NLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDP  327 (734)
T ss_pred             CC-ceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCC
Confidence            44 7888888776     3389999999995    779999999999997 589999999988764

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2

Probab=91.32  E-value=0.23  Score=43.33  Aligned_cols=39  Identities=21%  Similarity=0.201  Sum_probs=31.8

Q ss_pred             EEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeec
Q psy8674         357 VIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID  395 (439)
Q Consensus       357 ~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~  395 (439)
                      ||+++|+|+.++++++++++..+++++.+++.+.+...+
T Consensus         1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~   39 (193)
T PF13632_consen    1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN   39 (193)
T ss_pred             CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC
Confidence            689999999999999999999999656667766555443

>PLN02189 cellulose synthase

Probab=91.21  E-value=0.56  Score=50.56  Aligned_cols=53  Identities=8%  Similarity=0.103  Sum_probs=46.0

Q ss_pred             CcEEEEEecCCCC-----hhHHHHhhhhh----ccCcEEEEecCCccc-CCCchHHHHHHHhc
Q psy8674          15 GKVRLIRNTEREG-----LIRTRSRGAKE----SRGEVIVFLDAHCEV-GLNWLPPLLAPIYS   67 (439)
Q Consensus        15 ~~i~~i~~~~n~G-----~a~arN~G~~~----A~g~~i~flD~D~~~-~~~~l~~l~~~~~~   67 (439)
                      |++.+|..+++.|     .|+|.|..++.    ..|+||+-||+|..+ +|..|.+.+-.|..
T Consensus       498 P~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflD  560 (1040)
T PLN02189        498 PRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD  560 (1040)
T ss_pred             ceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcC
Confidence            4899999999888     59999999954    479999999999999 56999999988874

>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A

Probab=91.21  E-value=0.79  Score=37.13  Aligned_cols=72  Identities=11%  Similarity=0.152  Sum_probs=46.8

Q ss_pred             ceEEEEEecCCChhHHHHHHHHH---H-hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674         270 KASVILVFHNEGFSSLMRTVHSI---I-KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT  345 (439)
Q Consensus       270 ~vsiiip~~n~~~~~l~~~l~sl---~-~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a  345 (439)
                      ++.||||.+|++ +.|...|..+   + +|.   ..+.|+||+-..+                         ..++.|.-
T Consensus        48 kvAiIIPyRdR~-~hL~~fl~~l~~~L~rQ~---~~y~I~vieQ~~~-------------------------~~FNRg~L   98 (136)
T PF13733_consen   48 KVAIIIPYRDRE-EHLRIFLPHLHPFLQRQQ---LDYRIFVIEQVDN-------------------------GPFNRGKL   98 (136)
T ss_dssp             EEEEEEEESS-H-HHHHHHHHHHHHHHHHTT----EEEEEEEEE-SS-------------------------S---HHHH
T ss_pred             ceEEEEEeCCHH-HHHHHHHHHHHHHHhhCc---ceEEEEEEeeccC-------------------------CCCchhhh
Confidence            799999999999 8888877654   3 333   2348888864322                         12346778


Q ss_pred             HHHHHhhcC----CCEEEEEcCCCccCCC
Q psy8674         346 RSRGAKESR----GEVIVFLDAHCEVGLN  370 (439)
Q Consensus       346 ~n~g~~~a~----~d~i~~ld~D~~~~~~  370 (439)
                      +|.|+..|.    .|+++|-|.|..+..+
T Consensus        99 ~NvGf~eA~~~~~~dc~ifHDVDllP~~~  127 (136)
T PF13733_consen   99 MNVGFLEALKDDDFDCFIFHDVDLLPEND  127 (136)
T ss_dssp             HHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred             hhHHHHHHhhccCCCEEEEecccccccCC
Confidence            888877663    6899999999887544

...

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis

Probab=91.16  E-value=4  Score=38.10  Aligned_cols=105  Identities=12%  Similarity=0.080  Sum_probs=64.2

Q ss_pred             ceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC---CC------C
Q psy8674         270 KASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT---ER------E  340 (439)
Q Consensus       270 ~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~---~~------~  340 (439)
                      .++||....|-. ..+..+|.|++.....++  .+-|++|+.+++..+ .+.+.....+..+.++..+   ..      .
T Consensus         2 ~~~iv~~~~~y~-~~~~~~i~Sil~n~~~~~--~fhii~d~~s~~~~~-~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~   77 (280)
T cd06431           2 HVAIVCAGYNAS-RDVVTLVKSVLFYRRNPL--HFHLITDEIARRILA-TLFQTWMVPAVEVSFYNAEELKSRVSWIPNK   77 (280)
T ss_pred             EEEEEEccCCcH-HHHHHHHHHHHHcCCCCE--EEEEEECCcCHHHHH-HHHHhccccCcEEEEEEhHHhhhhhccCccc
Confidence            467787775545 888999999998754444  888998887766555 3433333333345555432   10      1


Q ss_pred             CHHHH----HHHHHhhc--CCCEEEEEcCCCccCCCChHHHHHhh
Q psy8674         341 GLIRT----RSRGAKES--RGEVIVFLDAHCEVGLNWLPPLLAPI  379 (439)
Q Consensus       341 g~~~a----~n~g~~~a--~~d~i~~ld~D~~~~~~~l~~l~~~~  379 (439)
                      ..+..    +-..-+.-  .-+-++.||+|..+..+ |..|.+.+
T Consensus        78 ~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d-i~eL~~~~  121 (280)
T cd06431          78 HYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATD-IAELWKIF  121 (280)
T ss_pred             chhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC-HHHHHHHh
Confidence            11111    22222333  36899999999988654 77777764

The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=90.98  E-value=4  Score=36.35  Aligned_cols=97  Identities=10%  Similarity=0.097  Sum_probs=58.7

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhh
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKE  352 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~  352 (439)
                      .+|..+.  ..|...|+++.+....    +|+||-+... ....+.+..  ...+..+.+.... +..|.+.+...++..
T Consensus        24 llpi~g~--~li~~~l~~l~~~gi~----~i~iv~~~~~-~~i~~~~~~--~~~~~~i~~~~~~~~~~g~~~~l~~~~~~   94 (221)
T cd06422          24 LVPVAGK--PLIDHALDRLAAAGIR----RIVVNTHHLA-DQIEAHLGD--SRFGLRITISDEPDELLETGGGIKKALPL   94 (221)
T ss_pred             eeeECCE--EHHHHHHHHHHHCCCC----EEEEEccCCH-HHHHHHHhc--ccCCceEEEecCCCcccccHHHHHHHHHh
Confidence            4455554  6888999998876432    6666654332 222212221  1122234444433 456788889888888


Q ss_pred             cCCCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674         353 SRGEVIVFLDAHCEVGLNWLPPLLAPIY  380 (439)
Q Consensus       353 a~~d~i~~ld~D~~~~~~~l~~l~~~~~  380 (439)
                      ...+.++++++|..+..+.. .+++...
T Consensus        95 ~~~~~~lv~~~D~i~~~~~~-~~~~~~~  121 (221)
T cd06422          95 LGDEPFLVVNGDILWDGDLA-PLLLLHA  121 (221)
T ss_pred             cCCCCEEEEeCCeeeCCCHH-HHHHHHH
Confidence            76688999999998877644 4555443

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function

Probab=90.93  E-value=2.2  Score=39.80  Aligned_cols=107  Identities=16%  Similarity=0.100  Sum_probs=70.0

Q ss_pred             eEEEE-EecC-CC-hhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC---------
Q psy8674         271 ASVIL-VFHN-EG-FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE---------  338 (439)
Q Consensus       271 vsiii-p~~n-~~-~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~---------  338 (439)
                      ++|++ |.|. +. +..|.+-|+....+..    ..+++-++++++...+ +|+.+.+.  +.++++..+.         
T Consensus         3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~G~----~~~~~Y~~~~~~~~~~-vL~~Y~~~--g~v~~~~w~~~~~~~~~~~   75 (285)
T PF01697_consen    3 FVVCVSPLFGNEDDWLQLIEWIEYHRLLGV----DHFYFYDNSSSPSVRK-VLKEYERS--GYVEVIPWPLRPKFPDFPS   75 (285)
T ss_pred             EEEEccchhcccccHHHHHHHHHHHHHhCC----CEEEEEEccCCHHHHH-hHHHHhhc--CeEEEEEcccccccCCccc
Confidence            56666 5554 43 1366666666555422    2677777778777655 89988765  3677776640         


Q ss_pred             ----------CCCHHHHHHHHHhhcC--CCEEEEEcCCCccCCCC----hHHHHHhhhcCCC
Q psy8674         339 ----------REGLIRTRSRGAKESR--GEVIVFLDAHCEVGLNW----LPPLLAPIYSDRK  384 (439)
Q Consensus       339 ----------~~g~~~a~n~g~~~a~--~d~i~~ld~D~~~~~~~----l~~l~~~~~~~~~  384 (439)
                                ..|...+.|-.+-..+  .+|++|+|-|..+-|..    .+.+...+++.+.
T Consensus        76 ~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~  137 (285)
T PF01697_consen   76 PFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPN  137 (285)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhccc
Confidence                      1245667777776655  78999999999975444    6777777776544

The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=90.74  E-value=4.3  Score=36.66  Aligned_cols=88  Identities=11%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc--CCCCCHHHHHHHHHhhcCCCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN--TEREGLIRTRSRGAKESRGEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~g~~~a~n~g~~~a~~d~i~~  360 (439)
                      ..|..+++.+.+....   .+|+|+-+.   +    .+.++.+.++  ++++..  ....|.+ ..-.++.....+.+++
T Consensus        28 Pli~~~i~~l~~~~~~---~~ivv~t~~---~----~i~~~~~~~~--~~v~~~~~~~~~g~~-~~~~a~~~~~~d~~lv   94 (238)
T PRK13368         28 PMIQHVYERAAQAAGV---EEVYVATDD---Q----RIEDAVEAFG--GKVVMTSDDHLSGTD-RLAEVMLKIEADIYIN   94 (238)
T ss_pred             CHHHHHHHHHHhcCCC---CeEEEECCh---H----HHHHHHHHcC--CeEEecCccCCCccH-HHHHHHHhCCCCEEEE
Confidence            5888888888775221   267776431   2    2333344443  333332  2223444 3333555555689999


Q ss_pred             EcCCCc-cCCCChHHHHHhhhcCC
Q psy8674         361 LDAHCE-VGLNWLPPLLAPIYSDR  383 (439)
Q Consensus       361 ld~D~~-~~~~~l~~l~~~~~~~~  383 (439)
                      +++|.- +.+..+..+++.+...+
T Consensus        95 ~~~D~P~i~~~~i~~l~~~~~~~~  118 (238)
T PRK13368         95 VQGDEPMIRPRDIDTLIQPMLDDP  118 (238)
T ss_pred             EcCCcCcCCHHHHHHHHHHHHHCC
Confidence            999984 68999999999886544

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=90.64  E-value=4.4  Score=36.41  Aligned_cols=104  Identities=13%  Similarity=0.207  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC---CCEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR---GEVIV  359 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~---~d~i~  359 (439)
                      ..++.+|+.++....   ..+||||-+...+........   ...+.++.++.  ...........|+...+   .+|++
T Consensus        33 pll~~tl~~f~~~~~---i~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v~--GG~~R~~SV~~gL~~~~~~~~~~Vl  104 (230)
T COG1211          33 PLLEHTLEAFLESPA---IDEIVVVVSPEDDPYFEKLPK---LSADKRVEVVK--GGATRQESVYNGLQALSKYDSDWVL  104 (230)
T ss_pred             EehHHHHHHHHhCcC---CCeEEEEEChhhhHHHHHhhh---hccCCeEEEec--CCccHHHHHHHHHHHhhccCCCEEE
Confidence            578889988876543   238999877766655442222   22234677774  33346777777888776   78999


Q ss_pred             EEcCCCcc-CCCChHHHHHhhhcCCC-EEEEeeeeee
Q psy8674         360 FLDAHCEV-GLNWLPPLLAPIYSDRK-IMTVPVIDGI  394 (439)
Q Consensus       360 ~ld~D~~~-~~~~l~~l~~~~~~~~~-~~v~~~~~~~  394 (439)
                      +-|+==-+ +++.|++++........ +.+.|..|.+
T Consensus       105 vHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~DTi  141 (230)
T COG1211         105 VHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTL  141 (230)
T ss_pred             EeccccCCCCHHHHHHHHHhhccCCcEEEEeeccCcE
Confidence            88887554 68888999955554333 5566776665

>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum

Probab=90.63  E-value=4.7  Score=37.83  Aligned_cols=114  Identities=13%  Similarity=0.112  Sum_probs=66.5

Q ss_pred             CceEEEEEecCCC-hhHHHHHHHHHHhcCCcCCcce-EEEEeCCCChhh-HHHHHHHHHHHc-----CCcEEEEEcCCC-
Q psy8674         269 PKASVILVFHNEG-FSSLMRTVHSIIKRTPAQYLEE-IILVDDFSSKAD-LDQKLEDYIQRF-----NGKVRLIRNTER-  339 (439)
Q Consensus       269 p~vsiiip~~n~~-~~~l~~~l~sl~~q~~~~~~~e-iivvdd~s~d~t-~~~~~~~~~~~~-----~~~v~~i~~~~~-  339 (439)
                      ++++|=||+-.++ ...|..+|.||+....+.-.-+ +|||-=+.+|.+ ...+.+.+...+     .+.+.+|..+.. 
T Consensus        52 ~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~~  131 (297)
T PF04666_consen   52 KKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPSY  131 (297)
T ss_pred             CeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEeccccc
Confidence            4588888887543 2789999999998765532111 222222223322 222333333221     124555554332 


Q ss_pred             -------------------------CCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         340 -------------------------EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       340 -------------------------~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                                               ..++-.++.+  ...|+|++.|.+|....++|+..+...+..-..
T Consensus       132 Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~--~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~  199 (297)
T PF04666_consen  132 YPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYC--QNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWES  199 (297)
T ss_pred             CCChhhhhhcccChhhhhhHHHhhcccHHHHHHHH--HhcCCeEEEecCCeEechhHHHHHHHHHHHhcC
Confidence                                     1123333333  235899999999999999999999998876443

N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=90.39  E-value=4.3  Score=37.20  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=62.2

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      .+|.-+.  ..|...|+++.+....   .+|+||-.... ....+.+..........+.++...+..|.+.+...+....
T Consensus        25 llpv~g~--plI~~~l~~l~~~~gi---~~i~iv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l   98 (257)
T cd06428          25 LFPVAGK--PMIHHHIEACAKVPDL---KEVLLIGFYPE-SVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQI   98 (257)
T ss_pred             cCeECCe--eHHHHHHHHHHhcCCC---cEEEEEecCCH-HHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHh
Confidence            4555565  5888889888863211   16777755432 2222233322212222455555555678887777666553


Q ss_pred             ---CCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         354 ---RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       354 ---~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                         ..+.++++.+|..... .+..+++.......
T Consensus        99 ~~~~~~~~lv~~gD~~~~~-dl~~~~~~h~~~~~  131 (257)
T cd06428          99 LAGNPSAFFVLNADVCCDF-PLQELLEFHKKHGA  131 (257)
T ss_pred             hccCCCCEEEEcCCeecCC-CHHHHHHHHHHcCC
Confidence               2467888999988654 48888887765544

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>PLN02917 CMP-KDO synthetase

Probab=90.11  E-value=4  Score=38.35  Aligned_cols=92  Identities=12%  Similarity=0.168  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc--CCCCCHHHHHHHHHhhcC--CCEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN--TEREGLIRTRSRGAKESR--GEVI  358 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~g~~~a~n~g~~~a~--~d~i  358 (439)
                      ..|...++.+...... .  +|||+ .  +++..    ......+  .+.++..  ....|.+.+ ..|++...  .|++
T Consensus        73 PLL~~vi~~a~~~~~~-~--~VVV~-~--~~e~I----~~~~~~~--~v~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~V  139 (293)
T PLN02917         73 PMIQRTWERAKLATTL-D--HIVVA-T--DDERI----AECCRGF--GADVIMTSESCRNGTERC-NEALKKLEKKYDIV  139 (293)
T ss_pred             EHHHHHHHHHHcCCCC-C--EEEEE-C--ChHHH----HHHHHHc--CCEEEeCCcccCCchHHH-HHHHHhccCCCCEE
Confidence            5677777777654321 1  44443 2  22222    2233333  3444433  233455555 45666553  6899


Q ss_pred             EEEcCCCcc-CCCChHHHHHhhhcCCCEEE
Q psy8674         359 VFLDAHCEV-GLNWLPPLLAPIYSDRKIMT  387 (439)
Q Consensus       359 ~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v  387 (439)
                      +++++|.-+ +++.|..+++.+.++...++
T Consensus       140 lil~gD~PlI~~~tI~~li~~~~~~~~~iv  169 (293)
T PLN02917        140 VNIQGDEPLIEPEIIDGVVKALQAAPDAVF  169 (293)
T ss_pred             EEecCCcCCCCHHHHHHHHHHHHhcCCceE
Confidence            999999984 89999999998876554333

>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ]

Probab=89.91  E-value=3.4  Score=39.64  Aligned_cols=116  Identities=16%  Similarity=0.141  Sum_probs=76.3

Q ss_pred             eEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCCh-hhHHH----------------HHHHHHHH-------
Q psy8674         271 ASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSK-ADLDQ----------------KLEDYIQR-------  326 (439)
Q Consensus       271 vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d-~t~~~----------------~~~~~~~~-------  326 (439)
                      |-|.|.+|...  .+..+|.+++++.......-|-||+-...+ .....                ....+...       
T Consensus         2 IFvsiasyRD~--~c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   79 (343)
T PF11397_consen    2 IFVSIASYRDP--ECAPTLKDLFARATNPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWP   79 (343)
T ss_pred             EEEEEeeecCc--hHHHHHHHHHHhcCCCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhcccccccc
Confidence            66889999876  488889998877544334455555543222 21100                01111111       


Q ss_pred             ------cCCcEEEEEcC--CCCCHHHHHHHHHhhcCC-CEEEEEcCCCccCCCChHHHHHhhhc--CCCEEEE
Q psy8674         327 ------FNGKVRLIRNT--EREGLIRTRSRGAKESRG-EVIVFLDAHCEVGLNWLPPLLAPIYS--DRKIMTV  388 (439)
Q Consensus       327 ------~~~~v~~i~~~--~~~g~~~a~n~g~~~a~~-d~i~~ld~D~~~~~~~l~~l~~~~~~--~~~~~v~  388 (439)
                            ...+|++++.+  ...|...|+..+.+.-+| +|++-+|+.+.+.++|=+.|++.+..  ++..+..
T Consensus        80 ~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS  152 (343)
T PF11397_consen   80 DGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLS  152 (343)
T ss_pred             cccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEe
Confidence                  11356666554  458999999999988775 69999999999999999999998876  3335555

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=89.84  E-value=2.9  Score=36.51  Aligned_cols=96  Identities=18%  Similarity=0.229  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC--CCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~--~d~i~~  360 (439)
                      ..|..+++.+.....  .  +|+||.+.   ...    .++....  .+.++..+. .|.+.++..|++...  ++.+++
T Consensus        31 ~ll~~~l~~l~~~~~--~--~vvvv~~~---~~~----~~~~~~~--~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv   96 (195)
T TIGR03552        31 AMLRDVITALRGAGA--G--AVLVVSPD---PAL----LEAARNL--GAPVLRDPG-PGLNNALNAALAEAREPGGAVLI   96 (195)
T ss_pred             HHHHHHHHHHHhcCC--C--CEEEECCC---HHH----HHHHHhc--CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEE
Confidence            445555665554321  1  56666542   111    2222222  466775544 489999999988754  468999


Q ss_pred             EcCCCc-cCCCChHHHHHhhhcCCCEEEEeeeee
Q psy8674         361 LDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVIDG  393 (439)
Q Consensus       361 ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~  393 (439)
                      +-+|.- ++++.+..+++.+.. ...+++|..+.
T Consensus        97 ~~~D~P~l~~~~i~~l~~~~~~-~~~vi~p~~~G  129 (195)
T TIGR03552        97 LMADLPLLTPRELKRLLAAATE-GDVVIAPDRGG  129 (195)
T ss_pred             EeCCCCCCCHHHHHHHHHhccc-CCEEEEecCCC
Confidence            999988 589999999998754 45677776544

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=89.82  E-value=10  Score=34.03  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=58.7

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      .+|.-+.  ..|...|+++......    +|+||-+. ......+.+.+.. .++..+.++......|.+.+...|....
T Consensus        25 l~~i~g~--~li~~~l~~l~~~~~~----~i~vv~~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~~~g~~~sl~~a~~~i   96 (236)
T cd04189          25 LIPVAGK--PIIQYAIEDLREAGIE----DIGIVVGP-TGEEIKEALGDGS-RFGVRITYILQEEPLGLAHAVLAARDFL   96 (236)
T ss_pred             eeEECCc--chHHHHHHHHHHCCCC----EEEEEcCC-CHHHHHHHhcchh-hcCCeEEEEECCCCCChHHHHHHHHHhc
Confidence            4454444  6888888888865322    67766554 2222221222211 1223466665555678888888888876


Q ss_pred             CCCEEEEEcCCCccCCCChHHHHHhhhcCC
Q psy8674         354 RGEVIVFLDAHCEVGLNWLPPLLAPIYSDR  383 (439)
Q Consensus       354 ~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~  383 (439)
                      ..+-++++.+|..+..+ +..++..+....
T Consensus        97 ~~~~~li~~~D~~~~~~-~~~~~~~~~~~~  125 (236)
T cd04189          97 GDEPFVVYLGDNLIQEG-ISPLVRDFLEED  125 (236)
T ss_pred             CCCCEEEEECCeecCcC-HHHHHHHHHhcC
Confidence            53345558889887665 555666554433

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=89.82  E-value=13  Score=32.73  Aligned_cols=68  Identities=13%  Similarity=0.158  Sum_probs=46.0

Q ss_pred             HHHHHHHHhc---CCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeE
Q psy8674           4 KKLEDYIERF---NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM   72 (439)
Q Consensus         4 ~~l~~~~~~~---~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~   72 (439)
                      +.+.+++.+.   ...+.+....+..|.+.+.-.|++....+.++++++|..++++ +..+++.+.+....+
T Consensus        56 ~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~~~-~~~~l~~~~~~~~~~  126 (223)
T cd06915          56 EQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQFLVLNGDTYFDVD-LLALLAALRASGADA  126 (223)
T ss_pred             HHHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhhcCCCCEEEEECCcccCCC-HHHHHHHHHhCCCcE
Confidence            4455666532   2234455556667888888888887777889999999987655 677777776544433

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=89.81  E-value=4.8  Score=36.42  Aligned_cols=98  Identities=9%  Similarity=0.120  Sum_probs=60.6

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH---HcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      .+|.-+ . ..|..+|+++.+....    +|+||-+.....    .+.++..   .++..+.+...+...|.+.++..+.
T Consensus        25 llpv~~-~-pli~~~l~~l~~~gi~----~i~vv~~~~~~~----~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~   94 (240)
T cd02538          25 LLPVYD-K-PMIYYPLSTLMLAGIR----EILIISTPEDLP----LFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGE   94 (240)
T ss_pred             eeEECC-E-EhHHHHHHHHHHCCCC----EEEEEeCcchHH----HHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHH
Confidence            345554 4 6888889888864322    677765432212    2223322   1222355554555678888998888


Q ss_pred             hhcCCCEEEEEcCCCccCCCChHHHHHhhhc
Q psy8674         351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYS  381 (439)
Q Consensus       351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~  381 (439)
                      .....+-++++.+|..+.+..+..+++....
T Consensus        95 ~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~  125 (240)
T cd02538          95 EFIGDDPVCLILGDNIFYGQGLSPILQRAAA  125 (240)
T ss_pred             HhcCCCCEEEEECCEEEccHHHHHHHHHHHh
Confidence            8776666777788887766667888876653

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>KOG1413|consensus

Probab=89.70  E-value=1.8  Score=40.71  Aligned_cols=117  Identities=16%  Similarity=0.162  Sum_probs=79.5

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC--------
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--------  337 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~--------  337 (439)
                      ..+|.+.||+-+-|+. +.+++|++.|+.+.+....+-|||.-||+...+.+ .+..+.+.    +..+.++        
T Consensus        64 ~~~~v~pvvVf~csR~-~~lr~~v~kll~yrPsaekfpiiVSQD~~~e~vk~-~~~~~g~~----v~~i~~~~h~~~ei~  137 (411)
T KOG1413|consen   64 NWPPVIPVVVFACSRA-DALRRHVKKLLEYRPSAEKFPIIVSQDCEKEAVKK-KLLSYGSD----VSHIQHPMHLKDEIS  137 (411)
T ss_pred             CCCCceeEEEEecCcH-HHHHHHHHHHHHhCcchhhcCEEEeccCCcHHHHH-HHHHhccc----hhhhcCccccccccc
Confidence            4456788888888998 99999999999887655555788888888766544 55555332    2222222        


Q ss_pred             -----CCCC--------HHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHH---hhhcCCCEEEE
Q psy8674         338 -----EREG--------LIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA---PIYSDRKIMTV  388 (439)
Q Consensus       338 -----~~~g--------~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~---~~~~~~~~~v~  388 (439)
                           +...        +..|+|..+...+.+.++.+.+|..+.|++.+-+..   .+..++...++
T Consensus       138 v~~~~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcv  204 (411)
T KOG1413|consen  138 VPPRHKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCV  204 (411)
T ss_pred             cCCcccccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEe
Confidence                 1111        345666666667789999999999999999877654   33344444444

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=89.65  E-value=15  Score=35.65  Aligned_cols=68  Identities=16%  Similarity=0.209  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHhc---CCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674           2 LDKKLEDYIERF---NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK   70 (439)
Q Consensus         2 ~~~~l~~~~~~~---~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~   70 (439)
                      ..+++++|....   +.+|+++...+..|-++|.=.+...-.++-++.++.|...+-+ +..+++.+.+...
T Consensus        57 ~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~~~  127 (358)
T COG1208          57 LGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLD-LSELLEFHKKKGA  127 (358)
T ss_pred             chHHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccC-HHHHHHHHHhccC
Confidence            356788888762   3689999988889998888888888888889999999999988 9999999987643

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=89.52  E-value=1  Score=48.84  Aligned_cols=53  Identities=13%  Similarity=0.167  Sum_probs=46.2

Q ss_pred             CcEEEEEecCCCC-----hhHHHHhhhhhc----cCcEEEEecCCcccC-CCchHHHHHHHhc
Q psy8674          15 GKVRLIRNTEREG-----LIRTRSRGAKES----RGEVIVFLDAHCEVG-LNWLPPLLAPIYS   67 (439)
Q Consensus        15 ~~i~~i~~~~n~G-----~a~arN~G~~~A----~g~~i~flD~D~~~~-~~~l~~l~~~~~~   67 (439)
                      |.+.+|..+++.|     .|+|.|..++.+    .|+||+-||+|..+. |..|.+.+-.|..
T Consensus       516 P~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lD  578 (1079)
T PLN02638        516 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMD  578 (1079)
T ss_pred             cceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcC
Confidence            4889999999888     599999999655    799999999999985 9999999988874

>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

Probab=89.42  E-value=1.1  Score=39.93  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=51.5

Q ss_pred             ceEEEEEecCCChhHHHHHHHHHH---hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHH
Q psy8674         270 KASVILVFHNEGFSSLMRTVHSII---KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR  346 (439)
Q Consensus       270 ~vsiiip~~n~~~~~l~~~l~sl~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~  346 (439)
                      +++||||.+++. +.|...|..+.   +...  ..+.|+||..-.                         ...++.+..+
T Consensus         3 ~~aiivpyr~R~-~~l~~~l~~~~~~L~rq~--~~~~i~vi~Q~~-------------------------~~~FNR~~ll   54 (219)
T cd00899           3 KVAIIVPFRNRF-EHLLIFLPHLHPFLQRQQ--LDYRIFVIEQVG-------------------------NFRFNRAKLL   54 (219)
T ss_pred             ceEEEEecCCHH-HHHHHHHHHHHHHHHhcC--CcEEEEEEEecC-------------------------Cccchhhhhh
Confidence            689999999999 88887776543   2221  233666664221                         1123466777


Q ss_pred             HHHHhhcC----CCEEEEEcCCCccCCCChH
Q psy8674         347 SRGAKESR----GEVIVFLDAHCEVGLNWLP  373 (439)
Q Consensus       347 n~g~~~a~----~d~i~~ld~D~~~~~~~l~  373 (439)
                      |.|...|.    .++++|-|.|..+..+++.
T Consensus        55 NvG~~~a~k~~~~dc~i~hDVDllP~~~~~~   85 (219)
T cd00899          55 NVGFLEALKDGDWDCFIFHDVDLLPENDRNL   85 (219)
T ss_pred             hHHHHHHhhcCCccEEEEecccccccCcccc
Confidence            88776553    6799999999998887755

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.

>PLN02248 cellulose synthase-like protein

Probab=89.32  E-value=0.88  Score=49.40  Aligned_cols=53  Identities=13%  Similarity=0.095  Sum_probs=44.3

Q ss_pred             CcEEEEEecCCCC-----hhHHHHhhhh----hccCcEEEEecCCccc-CCCchHHHHHHHhc
Q psy8674          15 GKVRLIRNTEREG-----LIRTRSRGAK----ESRGEVIVFLDAHCEV-GLNWLPPLLAPIYS   67 (439)
Q Consensus        15 ~~i~~i~~~~n~G-----~a~arN~G~~----~A~g~~i~flD~D~~~-~~~~l~~l~~~~~~   67 (439)
                      |.+.+|..+++.|     .|+|.|.-++    ...|+||+.||+|..+ ++..|.+.+-.|..
T Consensus       585 P~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD  647 (1135)
T PLN02248        585 PMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD  647 (1135)
T ss_pred             ceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence            3888888888877     5899999997    5579999999999998 56699888888874

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=89.09  E-value=3.3  Score=37.27  Aligned_cols=103  Identities=16%  Similarity=0.253  Sum_probs=62.6

Q ss_pred             CChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC---CcEEEEEcCCCCCHHHHHHHHHhhcC-C
Q psy8674         280 EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN---GKVRLIRNTEREGLIRTRSRGAKESR-G  355 (439)
Q Consensus       280 ~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~---~~v~~i~~~~~~g~~~a~n~g~~~a~-~  355 (439)
                      .. ..|..+++.+......+   +|+||-+...   .. .++.+...+.   .++.++.  ...+...+.-.|+.... .
T Consensus        29 gk-pll~~~i~~~~~~~~~~---~ivVv~~~~~---~~-~~~~~~~~~~~~~~~~~~v~--~g~~r~~sv~~gl~~~~~~   98 (230)
T PRK13385         29 GE-PIFIHALRPFLADNRCS---KIIIVTQAQE---RK-HVQDLMKQLNVADQRVEVVK--GGTERQESVAAGLDRIGNE   98 (230)
T ss_pred             Ce-EHHHHHHHHHHcCCCCC---EEEEEeChhh---HH-HHHHHHHhcCcCCCceEEcC--CCchHHHHHHHHHHhccCC
Confidence            44 68888998887643222   6666654322   12 2333333332   1345553  22344577777777653 5


Q ss_pred             CEEEEEcCCCcc-CCCChHHHHHhhhcCCC-EEEEeeee
Q psy8674         356 EVIVFLDAHCEV-GLNWLPPLLAPIYSDRK-IMTVPVID  392 (439)
Q Consensus       356 d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~-~~v~~~~~  392 (439)
                      ++++++|+|.-+ +++.+.++++.+...+. ..+.|..+
T Consensus        99 d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~d  137 (230)
T PRK13385         99 DVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKD  137 (230)
T ss_pred             CeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccc
Confidence            789999999885 79999999999876544 44445443

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=88.96  E-value=6.4  Score=36.57  Aligned_cols=87  Identities=14%  Similarity=0.130  Sum_probs=56.1

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      .+|..+.. ..|..+++.+.......   +|+||-+....   . .++++.......+.++..+...|.+.|.-.++...
T Consensus        26 ll~l~g~~-~li~~~l~~l~~~~~~~---~i~vvt~~~~~---~-~v~~~l~~~~~~~~ii~ep~~~gTa~ai~~a~~~~   97 (274)
T cd02509          26 FLKLFGDK-SLLQQTLDRLKGLVPPD---RILVVTNEEYR---F-LVREQLPEGLPEENIILEPEGRNTAPAIALAALYL   97 (274)
T ss_pred             EeEcCCCC-cHHHHHHHHHhcCCCCC---cEEEEechHHH---H-HHHHHHhhcCCCceEEECCCCCCcHHHHHHHHHHH
Confidence            45666656 78999999887653222   67777553211   1 34433333122567776677778888887777654


Q ss_pred             C----CCEEEEEcCCCccC
Q psy8674         354 R----GEVIVFLDAHCEVG  368 (439)
Q Consensus       354 ~----~d~i~~ld~D~~~~  368 (439)
                      .    .++++++.+|..+.
T Consensus        98 ~~~~~~~~vlVl~~D~~i~  116 (274)
T cd02509          98 AKRDPDAVLLVLPSDHLIE  116 (274)
T ss_pred             HhcCCCCeEEEecchhccc
Confidence            3    57899999998875

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=88.78  E-value=4  Score=36.78  Aligned_cols=100  Identities=16%  Similarity=0.262  Sum_probs=60.9

Q ss_pred             CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEE
Q psy8674         279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVI  358 (439)
Q Consensus       279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i  358 (439)
                      +.. ..+..+++.+......+   +|+||-+.....  + .+..+....  .+.++..+...+.+ ....+++....+++
T Consensus        22 ~Gk-pli~~~i~~l~~~~~~~---~ivVv~~~~~~~--~-~i~~~~~~~--~v~~v~~~~~~~l~-~~~~~~~~~~~d~v   91 (233)
T cd02518          22 GGK-PLLEHLLDRLKRSKLID---EIVIATSTNEED--D-PLEALAKKL--GVKVFRGSEEDVLG-RYYQAAEEYNADVV   91 (233)
T ss_pred             CCc-cHHHHHHHHHHhCCCCC---eEEEECCCCccc--H-HHHHHHHHc--CCeEEECCchhHHH-HHHHHHHHcCCCEE
Confidence            345 68888888887643222   677775544311  1 233333332  46677665543222 22334444567999


Q ss_pred             EEEcCCCcc-CCCChHHHHHhhhcCCCEEEE
Q psy8674         359 VFLDAHCEV-GLNWLPPLLAPIYSDRKIMTV  388 (439)
Q Consensus       359 ~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~  388 (439)
                      +++++|.-+ +++.++++++.+...+...++
T Consensus        92 li~~~D~P~i~~~~i~~li~~~~~~~~~~~~  122 (233)
T cd02518          92 VRITGDCPLIDPEIIDAVIRLFLKSGADYTS  122 (233)
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            999999985 799999999988765544443

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=88.59  E-value=6.2  Score=35.35  Aligned_cols=99  Identities=17%  Similarity=0.163  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc-CCCEEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-RGEVIVFL  361 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a-~~d~i~~l  361 (439)
                      ..+..+++.+......+   +|+||-+...   .+.+.+.+.... ..+.++...  .+.+.+.-.|+... ..++++++
T Consensus        32 pli~~~l~~l~~~~~~~---~ivvv~~~~~---~~~~~~~~~~~~-~~~~~~~~~--~~~~~sv~~~l~~~~~~d~vlv~  102 (227)
T PRK00155         32 PILEHTLEAFLAHPRID---EIIVVVPPDD---RPDFAELLLAKD-PKVTVVAGG--AERQDSVLNGLQALPDDDWVLVH  102 (227)
T ss_pred             EHHHHHHHHHHcCCCCC---EEEEEeChHH---HHHHHHHhhccC-CceEEeCCc--chHHHHHHHHHHhCCCCCEEEEc
Confidence            68888888887543222   6777754322   121222222111 134444322  24677777888775 57899999


Q ss_pred             cCCCc-cCCCChHHHHHhhhcCCC-EEEEee
Q psy8674         362 DAHCE-VGLNWLPPLLAPIYSDRK-IMTVPV  390 (439)
Q Consensus       362 d~D~~-~~~~~l~~l~~~~~~~~~-~~v~~~  390 (439)
                      ++|.- ++++.+..+++.+..++. ..++|.
T Consensus       103 ~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~  133 (227)
T PRK00155        103 DAARPFLTPDDIDRLIEAAEETGAAILAVPV  133 (227)
T ss_pred             cCccCCCCHHHHHHHHHHHhhCCCEEEEEec
Confidence            99988 589999999998876544 445554

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=88.55  E-value=1.7  Score=37.37  Aligned_cols=59  Identities=20%  Similarity=0.253  Sum_probs=45.2

Q ss_pred             EEEEEec-CCCChhHHHHhhhhhcc--CcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeee
Q psy8674          17 VRLIRNT-EREGLIRTRSRGAKESR--GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVP   75 (439)
Q Consensus        17 i~~i~~~-~n~G~a~arN~G~~~A~--g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~   75 (439)
                      +.++.++ ...|.+.+...|++.+.  .++++++.+|+- +++..++.+++.+..++..++.+
T Consensus        64 ~~~~~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~  126 (186)
T cd04182          64 VVVVINPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGIVAP  126 (186)
T ss_pred             eEEEeCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence            5555544 33588899999999886  799999999994 68999999999887555545443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=88.54  E-value=5.6  Score=39.86  Aligned_cols=100  Identities=9%  Similarity=0.055  Sum_probs=62.0

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      .+|.-+ . ..|..+|+.+......    +|+|+-... .+    .+.++.......+.++......|.+.+...++...
T Consensus        27 ll~v~g-k-pli~~~l~~l~~~gi~----~ivvv~~~~-~~----~i~~~~~~~~~~~~~~~~~~~~G~~~sl~~a~~~l   95 (446)
T PRK14353         27 LHPVAG-R-PMLAHVLAAAASLGPS----RVAVVVGPG-AE----AVAAAAAKIAPDAEIFVQKERLGTAHAVLAAREAL   95 (446)
T ss_pred             cCEECC-c-hHHHHHHHHHHhCCCC----cEEEEECCC-HH----HHHHHhhccCCCceEEEcCCCCCcHHHHHHHHHHH
Confidence            345445 4 6888899888765422    566554432 22    23333333222344444555677777777777765


Q ss_pred             C--CCEEEEEcCCC-ccCCCChHHHHHhhhcCCC
Q psy8674         354 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       354 ~--~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~  384 (439)
                      .  .+.++++++|. .+++..+..+++.++....
T Consensus        96 ~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~  129 (446)
T PRK14353         96 AGGYGDVLVLYGDTPLITAETLARLRERLADGAD  129 (446)
T ss_pred             hccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCc
Confidence            2  57788899998 5788899999986655433

>PLN03180 reversibly glycosylated polypeptide; Provisional

Probab=88.47  E-value=1.4  Score=41.36  Aligned_cols=89  Identities=16%  Similarity=0.115  Sum_probs=52.4

Q ss_pred             CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHH------------HHHHHHHHHcCCcEEEEE
Q psy8674         268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLD------------QKLEDYIQRFNGKVRLIR  335 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~------------~~~~~~~~~~~~~v~~i~  335 (439)
                      ...+.||||+-.+. +.|+.-...     ...+  .+|||-|+....+..            +-+......   ....| 
T Consensus        10 ~~evdIVi~TI~~~-~fL~~~r~~-----l~~~--h~iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~---~~~~I-   77 (346)
T PLN03180         10 KDELDIVIPTIRNL-DFLEMWRPF-----FQPY--HLIIVQDGDPSKEIKVPEGFDYELYNRNDINRILGP---KASCI-   77 (346)
T ss_pred             CCcceEEEeccCch-hHHHHHHHh-----cCcc--cEEEEecCCcccceeccCCCceeecCHHHHHhhhcc---ccccc-
Confidence            34699999997666 555544433     2334  566666644322211            001111111   11111 


Q ss_pred             cCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCC
Q psy8674         336 NTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNW  371 (439)
Q Consensus       336 ~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~  371 (439)
                         ...-.+.+|.|.-.++.+|++++|+|+.+..+|
T Consensus        78 ---p~~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d~  110 (346)
T PLN03180         78 ---SFKDSACRCFGYLVSKKKYIFTIDDDCFVAKDP  110 (346)
T ss_pred             ---ccCcccchhhhheeecceEEEEECCCCCCCCCC
Confidence               233457899999899999999999999987663

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis

Probab=88.38  E-value=9  Score=34.88  Aligned_cols=113  Identities=13%  Similarity=0.141  Sum_probs=66.4

Q ss_pred             EEEEecC-CChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCC-----------
Q psy8674         273 VILVFHN-EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE-----------  340 (439)
Q Consensus       273 iiip~~n-~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~-----------  340 (439)
                      |++.+-+ .-...+.-++.||+..+....  .+.|+.++-++...+ .++.+.......++++......           
T Consensus         3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~--~~~il~~~is~~~~~-~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   79 (246)
T cd00505           3 IVIVATGDEYLRGAIVLMKSVLRHRTKPL--RFHVLTNPLSDTFKA-ALDNLRKLYNFNYELIPVDILDSVDSEHLKRPI   79 (246)
T ss_pred             EEEEecCcchhHHHHHHHHHHHHhCCCCe--EEEEEEccccHHHHH-HHHHHHhccCceEEEEeccccCcchhhhhcCcc
Confidence            4444444 223778889999998765444  899998886665544 6766655433345555442111           


Q ss_pred             C-HHHHHHHHHhhcC-CCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674         341 G-LIRTRSRGAKESR-GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP  389 (439)
Q Consensus       341 g-~~~a~n~g~~~a~-~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~  389 (439)
                      . .+..+-...+... -+-+++||+|..+. +-|..|.+.-.++...++++
T Consensus        80 ~~~~y~RL~i~~llp~~~kvlYLD~D~iv~-~di~~L~~~~l~~~~~aav~  129 (246)
T cd00505          80 KIVTLTKLHLPNLVPDYDKILYVDADILVL-TDIDELWDTPLGGQELAAAP  129 (246)
T ss_pred             ccceeHHHHHHHHhhccCeEEEEcCCeeec-cCHHHHhhccCCCCeEEEcc
Confidence            0 0112222222233 78899999999887 44777776544444444444

Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=88.30  E-value=8.4  Score=33.59  Aligned_cols=104  Identities=15%  Similarity=0.212  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHHHHHHHHhhcCCC--EEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKESRGE--VIV  359 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~a~n~g~~~a~~d--~i~  359 (439)
                      ..+..+++..+.....    +||||-..-   ..+ ........  ..++++.++. ..|.+..+-.|++++.++  .++
T Consensus        32 plv~~~~~~a~~a~~~----~vivV~g~~---~~~-~~~a~~~~--~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~  101 (199)
T COG2068          32 PLVRASAETALSAGLD----RVIVVTGHR---VAE-AVEALLAQ--LGVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVV  101 (199)
T ss_pred             cHHHHHHHHHHhcCCC----eEEEEeCcc---hhh-HHHhhhcc--CCeEEEeCcchhhhHhHHHHHHHHhcccCCCeEE
Confidence            5677777777654332    788886544   122 33333332  2578887764 589999999999998865  999


Q ss_pred             EEcCCCc-cCCCChHHHHHhhhcCCCEEEEeeeeeecCC
Q psy8674         360 FLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQ  397 (439)
Q Consensus       360 ~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~  397 (439)
                      ++-+|.- +.++.+..++..+.... .++.|........
T Consensus       102 ~~lgDmP~V~~~t~~rl~~~~~~~~-~~v~p~~~g~rG~  139 (199)
T COG2068         102 LMLGDMPQVTPATVRRLIAAFRARG-AAVRPVYGGARGH  139 (199)
T ss_pred             EEeCCCCCCCHHHHHHHHHhccccC-ceeeeeccCCcCC
Confidence            9999988 68999999999998774 5677765554443

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=88.28  E-value=6.4  Score=38.45  Aligned_cols=91  Identities=11%  Similarity=0.122  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEc
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD  362 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld  362 (439)
                      ..|..+++.+.....-+   +|+||-+....   + ..+.+..... .+.++.  ...+...+...|++....+++++.|
T Consensus        34 Pll~~tl~~l~~~~~i~---~IvVVv~~~~~---~-~~~~~~~~~~-~v~~v~--gG~~r~~SV~~gL~~l~~d~VLVhd  103 (378)
T PRK09382         34 PLWLHVLENLSSAPAFK---EIVVVIHPDDI---A-YMKKALPEIK-FVTLVT--GGATRQESVRNALEALDSEYVLIHD  103 (378)
T ss_pred             eHHHHHHHHHhcCCCCC---eEEEEeChHHH---H-HHHHhcccCC-eEEEeC--CCchHHHHHHHHHHhcCCCeEEEee
Confidence            68888998887653212   67777543221   1 3333322221 244442  2234566777788887779999999


Q ss_pred             CCCc-cCCCChHHHHHhhhcCC
Q psy8674         363 AHCE-VGLNWLPPLLAPIYSDR  383 (439)
Q Consensus       363 ~D~~-~~~~~l~~l~~~~~~~~  383 (439)
                      +|.- ++++.++.+++.+....
T Consensus       104 adrPfv~~e~I~~li~~~~~~~  125 (378)
T PRK09382        104 AARPFVPKELIDRLIEALDKAD  125 (378)
T ss_pred             ccccCCCHHHHHHHHHHhhcCC
Confidence            9976 47899999999887543

>PLN02917 CMP-KDO synthetase

Probab=87.53  E-value=13  Score=34.93  Aligned_cols=163  Identities=11%  Similarity=0.120  Sum_probs=83.2

Q ss_pred             HHHHHHHHhcCCcEEEEEe--cCCCChhHHHHhhhhhcc--CcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeeeeee
Q psy8674           4 KKLEDYIERFNGKVRLIRN--TEREGLIRTRSRGAKESR--GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVID   78 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~--~~n~G~a~arN~G~~~A~--g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~   78 (439)
                      +.+.+++++++  ++++.+  ....|.+.+. .|++...  .++++++++|.- +++..|+.+++.+.++...++...+.
T Consensus        98 e~I~~~~~~~~--v~vi~~~~~~~~GT~~~~-~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~  174 (293)
T PLN02917         98 ERIAECCRGFG--ADVIMTSESCRNGTERCN-EALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT  174 (293)
T ss_pred             HHHHHHHHHcC--CEEEeCCcccCCchHHHH-HHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEee
Confidence            44566666553  556543  3445766663 6665553  689999999998 59999999999887554333322222


Q ss_pred             cccC-CCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCc
Q psy8674          79 GIDY-QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVW  157 (439)
Q Consensus        79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~  157 (439)
                      .+.. +...+..    -.-.+..-+..+.|....++..  ++. . ...........+.++++++.+..+...+++-. -
T Consensus       175 ~~~~~~~~~ygr----v~vv~~~~g~alyfsr~~Ipe~--kd~-~-~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~-e  245 (293)
T PLN02917        175 SLKPEDASDPNR----VKCVVDNQGYAIYFSRGLIPYN--KSG-K-VNPQFPYLLHLGIQSYDAKFLKIYPELPPTPL-Q  245 (293)
T ss_pred             ecCHHHhcCCCc----eEEEECCCCeEEEeecCcCCcC--CCc-c-cccccceEEEEEEEEeCHHHHHHHHcCCCCcc-c
Confidence            1111 1111100    0000000000011111111110  000 0 00111234466789999999888776655421 1


Q ss_pred             cchhhHHHHHHHHhCCcEEEec
Q psy8674         158 GGENFELSFKIWMCGGSIEWVP  179 (439)
Q Consensus       158 ~~ED~Dl~~Rl~~~G~~i~~~p  179 (439)
                       .|.+---+|+.+.|++|...+
T Consensus       246 -~e~yLtdl~~le~G~~i~~~~  266 (293)
T PLN02917        246 -LEEDLEQLKVLENGYKMKVIK  266 (293)
T ss_pred             -chhccHHHHHHhCCCceEEEE
Confidence             133333357889999986655

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=87.53  E-value=8.4  Score=34.19  Aligned_cols=103  Identities=18%  Similarity=0.154  Sum_probs=63.0

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc------CCcEEEEEcCCCCCHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF------NGKVRLIRNTEREGLIRTRS  347 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~------~~~v~~i~~~~~~g~~~a~n  347 (439)
                      .+|.-|.  ..|..+|+.+.+...    .+|+||-+.....    .++.+.+..      ...+.++......|.+.++.
T Consensus        25 Llpv~g~--pli~~~l~~l~~~g~----~~iivv~~~~~~~----~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~   94 (214)
T cd04198          25 LLPVANK--PMIWYPLDWLEKAGF----EDVIVVVPEEEQA----EISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLR   94 (214)
T ss_pred             cCEECCe--eHHHHHHHHHHHCCC----CeEEEEECHHHHH----HHHHHHHhcccccCcceeEEEecCCCCcChHHHHH
Confidence            4555565  588888998887432    2777776432111    334444332      11233343456678899998


Q ss_pred             HHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674         348 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV  388 (439)
Q Consensus       348 ~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~  388 (439)
                      .+......+ ++++.+|. +.+.-+..+++.....+..+++
T Consensus        95 ~~~~~i~~d-~lv~~~D~-i~~~~l~~~l~~h~~~~~~~t~  133 (214)
T cd04198          95 HIRKKIKKD-FLVLSCDL-ITDLPLIELVDLHRSHDASLTV  133 (214)
T ss_pred             HHHhhcCCC-EEEEeCcc-ccccCHHHHHHHHhccCCcEEE
Confidence            888876555 67778885 4556678888877665554443

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PLN02190 cellulose synthase-like protein

Probab=87.39  E-value=2.4  Score=44.41  Aligned_cols=54  Identities=7%  Similarity=0.026  Sum_probs=45.5

Q ss_pred             CcEEEEEecCCCC-----hhHHHHhhhhhc----cCcEEEEecCCccc-CCCchHHHHHHHhcC
Q psy8674          15 GKVRLIRNTEREG-----LIRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIYSD   68 (439)
Q Consensus        15 ~~i~~i~~~~n~G-----~a~arN~G~~~A----~g~~i~flD~D~~~-~~~~l~~l~~~~~~~   68 (439)
                      |.+.+|..+++.|     .|+|.|.-++.+    .++||+-||+|..+ .|..+.+.+-.+...
T Consensus       252 P~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~  315 (756)
T PLN02190        252 PHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQK  315 (756)
T ss_pred             ceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCC
Confidence            4889999888887     489999998764    69999999999988 788888888877643

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=87.15  E-value=10  Score=34.32  Aligned_cols=68  Identities=15%  Similarity=0.237  Sum_probs=41.6

Q ss_pred             HHHHHHHHhcCCcEEEEE--ecCCCChhHHHHhhhhh--ccCcEEEEecCCc-ccCCCchHHHHHHHhcCCCeEe
Q psy8674           4 KKLEDYIERFNGKVRLIR--NTEREGLIRTRSRGAKE--SRGEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMT   73 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~--~~~n~G~a~arN~G~~~--A~g~~i~flD~D~-~~~~~~l~~l~~~~~~~~~~~v   73 (439)
                      +.+.+++.+++  ++++.  .+...|.+.+.......  ...+.++++++|+ .++++.++.+++.+...+..++
T Consensus        52 ~~i~~~~~~~~--~~v~~~~~~~~~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~  124 (245)
T PRK05450         52 ERIADAVEAFG--GEVVMTSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMA  124 (245)
T ss_pred             HHHHHHHHHcC--CEEEECCCcCCCchHHHHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeE
Confidence            34555666554  44443  23334544443322222  2468899999999 6799999999998875544433

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=86.81  E-value=9.3  Score=34.46  Aligned_cols=93  Identities=12%  Similarity=0.206  Sum_probs=55.2

Q ss_pred             EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC--CCCCHHHHHHHHHhh
Q psy8674         275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--EREGLIRTRSRGAKE  352 (439)
Q Consensus       275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~g~~~a~n~g~~~  352 (439)
                      +|..+ . ..|...|+.+.+....   .+|+|+-+.   +    .+.++...++  +.++...  ...|.+. .-.++..
T Consensus        21 ~~i~g-k-pll~~~l~~l~~~~~i---~~ivvv~~~---~----~i~~~~~~~~--~~~~~~~~~~~~gt~~-~~~~~~~   85 (239)
T cd02517          21 ADIAG-K-PMIQHVYERAKKAKGL---DEVVVATDD---E----RIADAVESFG--GKVVMTSPDHPSGTDR-IAEVAEK   85 (239)
T ss_pred             cccCC-c-CHHHHHHHHHHhCCCC---CEEEEECCc---H----HHHHHHHHcC--CEEEEcCcccCchhHH-HHHHHHh
Confidence            34444 4 6888888888765221   267766331   2    2333334433  4444332  2344443 3334444


Q ss_pred             cCC--CEEEEEcCCC-ccCCCChHHHHHhhhcC
Q psy8674         353 SRG--EVIVFLDAHC-EVGLNWLPPLLAPIYSD  382 (439)
Q Consensus       353 a~~--d~i~~ld~D~-~~~~~~l~~l~~~~~~~  382 (439)
                      ...  +.++++++|. .+++..+..+++.+..+
T Consensus        86 ~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~  118 (239)
T cd02517          86 LDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD  118 (239)
T ss_pred             cCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence            444  8999999998 57899999999887654

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=86.46  E-value=9.6  Score=34.51  Aligned_cols=94  Identities=12%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEE--cCCCCCHHHHHHHHHhh
Q psy8674         275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIR--NTEREGLIRTRSRGAKE  352 (439)
Q Consensus       275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~--~~~~~g~~~a~n~g~~~  352 (439)
                      +|.-+ . ..|..+|+.+.... . .  +|+|+-+ . +     .+.++...++  +.++.  .+...|.+.... ++..
T Consensus        22 l~i~G-k-pll~~~l~~l~~~~-i-~--~ivvv~~-~-~-----~i~~~~~~~~--~~v~~~~~~~~~gt~~~~~-~~~~   85 (245)
T PRK05450         22 ADIGG-K-PMIVRVYERASKAG-A-D--RVVVATD-D-E-----RIADAVEAFG--GEVVMTSPDHPSGTDRIAE-AAAK   85 (245)
T ss_pred             cccCC-c-CHHHHHHHHHHhcC-C-C--eEEEECC-c-H-----HHHHHHHHcC--CEEEECCCcCCCchHHHHH-HHHh
Confidence            34444 4 68888888887642 1 2  6776643 1 2     2233333333  34433  233344443333 3322


Q ss_pred             ---cCCCEEEEEcCCC-ccCCCChHHHHHhhhcCCC
Q psy8674         353 ---SRGEVIVFLDAHC-EVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       353 ---a~~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~  384 (439)
                         ...+.++++++|. .++++.+..+++.+...+.
T Consensus        86 ~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~  121 (245)
T PRK05450         86 LGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEA  121 (245)
T ss_pred             cCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCC
Confidence               2468899999999 5789999999998865533

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=86.26  E-value=11  Score=33.30  Aligned_cols=98  Identities=12%  Similarity=0.138  Sum_probs=57.6

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      .+|..+.  ..|..+|+.+......    +|+||-+... +    .+.++...   .+..+.++......|.+.++..+.
T Consensus        23 ll~~~g~--pli~~~l~~l~~~~~~----~iivv~~~~~-~----~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~   91 (220)
T cd06426          23 MLKVGGK--PILETIIDRFIAQGFR----NFYISVNYLA-E----MIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLP   91 (220)
T ss_pred             cCeECCc--chHHHHHHHHHHCCCc----EEEEECccCH-H----HHHHHHCCccccCccEEEEECCCCCcchHHHHHHH
Confidence            3455555  5888899988875432    6666644321 1    23333221   222355554445567677665444


Q ss_pred             hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                      . ...+.++++.+|... ...+..+++.+.....
T Consensus        92 ~-~~~~~~lv~~~D~i~-~~~~~~l~~~~~~~~~  123 (220)
T cd06426          92 E-KPTDPFLVMNGDILT-NLNYEHLLDFHKENNA  123 (220)
T ss_pred             h-hCCCCEEEEcCCEee-ccCHHHHHHHHHhcCC
Confidence            3 336778888999744 5568888888766544

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>PLN03153 hypothetical protein; Provisional

Probab=86.21  E-value=2.9  Score=41.78  Aligned_cols=48  Identities=23%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             cccceEEEEeHHHHHHhCCC-CCCCC----CccchhhHHHHHHHHhCCcEEEec
Q psy8674         131 THAGGLFAMDRAFFLELGGY-DPGLL----VWGGENFELSFKIWMCGGSIEWVP  179 (439)
Q Consensus       131 ~~~g~~~~irr~~f~~iGgf-de~~~----~~~~ED~Dl~~Rl~~~G~~i~~~p  179 (439)
                      ...|+.+++++.+.+++-.+ |+-..    .++ +|.-|..-+.+.|.++...|
T Consensus       261 A~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~-gD~rL~~CL~elGV~LT~~~  313 (537)
T PLN03153        261 AFGGGGIAISYPLAEALSRILDDCLDRYPKLYG-SDDRLHACITELGVPLSREP  313 (537)
T ss_pred             ccCCceEEEcHHHHHHHHHHhhhhhhhcccCCC-cHHHHHHHHHHcCCCceecC
Confidence            34577899999666654432 22111    134 78889999988887765554

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=86.13  E-value=4.6  Score=35.49  Aligned_cols=88  Identities=11%  Similarity=0.205  Sum_probs=61.0

Q ss_pred             CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHHHHHHHHhhcCCCE
Q psy8674         279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKESRGEV  357 (439)
Q Consensus       279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~a~n~g~~~a~~d~  357 (439)
                      +.. ..|..+++.+... .  .  +|+||-+..     + ....+.   ..++.++.... ..|...+.-.|+.....++
T Consensus        31 ~g~-~ll~~~i~~l~~~-~--~--~ivvv~~~~-----~-~~~~~~---~~~~~~i~~~~~~~G~~~si~~~l~~~~~~~   95 (200)
T PRK02726         31 QGV-PLLQRVARIAAAC-A--D--EVYIITPWP-----E-RYQSLL---PPGCHWLREPPPSQGPLVAFAQGLPQIKTEW   95 (200)
T ss_pred             CCE-eHHHHHHHHHHhh-C--C--EEEEECCCH-----H-HHHhhc---cCCCeEecCCCCCCChHHHHHHHHHhCCCCc
Confidence            345 6888888888642 1  1  677764321     1 222221   12466665443 3688899999999988899


Q ss_pred             EEEEcCCCcc-CCCChHHHHHhhhc
Q psy8674         358 IVFLDAHCEV-GLNWLPPLLAPIYS  381 (439)
Q Consensus       358 i~~ld~D~~~-~~~~l~~l~~~~~~  381 (439)
                      ++++++|.-+ +++.++.|++.+..
T Consensus        96 vlv~~~D~P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726         96 VLLLACDLPRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Confidence            9999999985 79999999998765

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=85.98  E-value=13  Score=36.16  Aligned_cols=98  Identities=15%  Similarity=0.181  Sum_probs=73.9

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      .+|.-|.+  .|.-.|++|..+...    ||+|+ -+...+    .++++...   ++.++.++......|.+.++-.+.
T Consensus        26 llpI~gkP--ii~~~l~~L~~~Gv~----eivi~-~~y~~~----~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~   94 (358)
T COG1208          26 LLPIAGKP--LIEYVLEALAAAGVE----EIVLV-VGYLGE----QIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNAL   94 (358)
T ss_pred             cceeCCcc--HHHHHHHHHHHCCCc----EEEEE-eccchH----HHHHHHhcccccCCceEEEecCCcCccHHHHHHHH
Confidence            56777774  889999999886543    67776 333322    34444433   245788888888899999999999


Q ss_pred             hhcCCCEEEEEcCCCccCCCChHHHHHhhhcCC
Q psy8674         351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR  383 (439)
Q Consensus       351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~  383 (439)
                      ....++-++++.+|...+-+ +..+++......
T Consensus        95 ~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~~  126 (358)
T COG1208          95 DLLGGDDFLVLNGDVLTDLD-LSELLEFHKKKG  126 (358)
T ss_pred             HhcCCCcEEEEECCeeeccC-HHHHHHHHHhcc
Confidence            99888899999999999988 999999887764

>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []

Probab=85.90  E-value=0.58  Score=43.67  Aligned_cols=47  Identities=17%  Similarity=0.208  Sum_probs=38.3

Q ss_pred             hHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeee
Q psy8674          29 IRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP   75 (439)
Q Consensus        29 a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~   75 (439)
                      .+.||.|.-.|+-+|++++|.||.+..++.-..++.+.++.....++
T Consensus        80 ~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~  126 (348)
T PF03214_consen   80 DACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTP  126 (348)
T ss_pred             cchhhhHhhhcccceEEEEccccccccCCccceehhhhccceeeecc
Confidence            57899999999999999999999998888777777777664444433

It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=85.58  E-value=2.5  Score=36.53  Aligned_cols=59  Identities=19%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             cEEEEEecC-CCChhHHHHhhhh-hccCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEee
Q psy8674          16 KVRLIRNTE-REGLIRTRSRGAK-ESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTV   74 (439)
Q Consensus        16 ~i~~i~~~~-n~G~a~arN~G~~-~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~   74 (439)
                      .++++..+. ..|.+.+.-.|++ ....++++++++|.- ++++.++.+++.+..++..+++
T Consensus        63 ~v~~v~~~~~~~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  124 (188)
T TIGR03310        63 NITLVHNPQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVV  124 (188)
T ss_pred             CeEEEECcChhcCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEE
Confidence            477776543 2577778888887 456799999999995 6899999999987765554443

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=85.29  E-value=9  Score=34.02  Aligned_cols=98  Identities=9%  Similarity=0.219  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC----CCCCHHHHHHHHHhhcC----
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT----EREGLIRTRSRGAKESR----  354 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~----~~~g~~~a~n~g~~~a~----  354 (439)
                      ..|..+|+.+.+....+   +|+|+-|   ++..    .+....++..+.+++.+    ...|...+...|++...    
T Consensus        27 pll~~~l~~l~~~~~~~---~IvV~~~---~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~   96 (223)
T cd02513          27 PLIAWTIEAALESKLFD---RVVVSTD---DEEI----AEVARKYGAEVPFLRPAELATDTASSIDVILHALDQLEELGR   96 (223)
T ss_pred             cHHHHHHHHHHhCCCCC---EEEEECC---cHHH----HHHHHHhCCCceeeCChHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence            68888888887643222   5665432   2222    22233332112333221    12355666666776543    


Q ss_pred             -CCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEee
Q psy8674         355 -GEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       355 -~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                       .++++++++|.-+ .+..+..+++.+.......+.+.
T Consensus        97 ~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~  134 (223)
T cd02513          97 DFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSV  134 (223)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence             3899999999985 79999999998876544444444

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=85.20  E-value=13  Score=37.61  Aligned_cols=101  Identities=12%  Similarity=0.146  Sum_probs=63.8

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      .+|..+.  ..|..+|+++.+....    +++||-.... .    .+.++.......+.++..+...|.+.+.-.|+...
T Consensus        26 llpi~gk--pli~~~l~~l~~~g~~----~iivvv~~~~-~----~i~~~~~~~~~~~~~~~~~~~~Gt~~si~~al~~l   94 (482)
T PRK14352         26 LHTLAGR--SMLGHVLHAAAGLAPQ----HLVVVVGHDR-E----RVAPAVAELAPEVDIAVQDEQPGTGHAVQCALEAL   94 (482)
T ss_pred             eceeCCc--cHHHHHHHHHHhcCCC----cEEEEECCCH-H----HHHHHhhccCCccEEEeCCCCCCcHHHHHHHHHHh
Confidence            4455554  5888999988865432    5555544322 2    22222222222355555556678788888888775


Q ss_pred             C---CCEEEEEcCCC-ccCCCChHHHHHhhhcCCCE
Q psy8674         354 R---GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKI  385 (439)
Q Consensus       354 ~---~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~~  385 (439)
                      .   .+.++++++|. .+++..+.+|++........
T Consensus        95 ~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~  130 (482)
T PRK14352         95 PADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNA  130 (482)
T ss_pred             ccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence            4   37899999998 46788899999887665543

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=85.17  E-value=13  Score=33.66  Aligned_cols=67  Identities=13%  Similarity=0.048  Sum_probs=52.5

Q ss_pred             hHHHHHHHHhcC---CcEEEEEecCCCChhHHHHhhhhhccCcE----EEEecCCcccCCCchHHHHHHHhcCCC
Q psy8674           3 DKKLEDYIERFN---GKVRLIRNTEREGLIRTRSRGAKESRGEV----IVFLDAHCEVGLNWLPPLLAPIYSDRK   70 (439)
Q Consensus         3 ~~~l~~~~~~~~---~~i~~i~~~~n~G~a~arN~G~~~A~g~~----i~flD~D~~~~~~~l~~l~~~~~~~~~   70 (439)
                      .+.+.++++...   .+|+++..++..|.+.|.-.+....+.+-    ++++++|...+. -+..+++.+.+...
T Consensus        58 ~~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~  131 (248)
T PF00483_consen   58 EEQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNA  131 (248)
T ss_dssp             HHHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSS
T ss_pred             cccccccccccccccccceeeecccccchhHHHHHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhcccc
Confidence            456778887653   24888888888999999999998888765    999999999888 56777777765544

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=85.10  E-value=6.5  Score=33.84  Aligned_cols=92  Identities=7%  Similarity=0.133  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEc--CCCCCHHHHHHHHHhhcCCCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRN--TEREGLIRTRSRGAKESRGEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~g~~~a~n~g~~~a~~d~i~~  360 (439)
                      ..|..+++.+...     ..+|+|+-+... .  . ...   ...  .+.++..  +...|...+.-.|+.....+++++
T Consensus        28 pll~~~l~~l~~~-----~~~ivv~~~~~~-~--~-~~~---~~~--~~~~i~~~~~~~~g~~~si~~al~~~~~~~vlv   93 (186)
T TIGR02665        28 PLIEHVLARLRPQ-----VSDLAISANRNP-E--R-YAQ---AGF--GLPVVPDALADFPGPLAGILAGLRWAGTDWVLT   93 (186)
T ss_pred             EHHHHHHHHHHhh-----CCEEEEEcCCCH-H--H-Hhh---ccC--CCcEEecCCCCCCCCHHHHHHHHHhcCCCeEEE
Confidence            6888888887632     126777654321 1  1 111   111  3455544  334788888888998888899999


Q ss_pred             EcCCCc-cCCCChHHHHHhhhcCCCEEEE
Q psy8674         361 LDAHCE-VGLNWLPPLLAPIYSDRKIMTV  388 (439)
Q Consensus       361 ld~D~~-~~~~~l~~l~~~~~~~~~~~v~  388 (439)
                      +++|.- ++++.++.+++.+...+..+++
T Consensus        94 ~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  122 (186)
T TIGR02665        94 VPCDTPFLPEDLVARLAAALEASDADIAV  122 (186)
T ss_pred             EecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence            999985 6899999999988764443443

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>KOG3916|consensus

Probab=85.08  E-value=6.2  Score=37.15  Aligned_cols=73  Identities=18%  Similarity=0.246  Sum_probs=48.3

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHH---hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSII---KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT  345 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a  345 (439)
                      -+|.||||..|++ ++|...|..|.   ++.--++  .|+||+-..+                         +.++.+.-
T Consensus       151 ~kvAIIIPfR~Re-~HL~~~l~~LhP~LqrQrL~y--~iyVieQ~g~-------------------------~~FNRakL  202 (372)
T KOG3916|consen  151 HKVAIIIPFRNRE-EHLRYLLHHLHPFLQRQRLDY--RIYVIEQAGN-------------------------KPFNRAKL  202 (372)
T ss_pred             ceeEEEeecccHH-HHHHHHHHHhhHHHHhhhhce--eEEEEEecCC-------------------------CcccHHHh
Confidence            3799999999999 88888776543   2211223  6777654332                         12345667


Q ss_pred             HHHHHhhcC----CCEEEEEcCCCccCC
Q psy8674         346 RSRGAKESR----GEVIVFLDAHCEVGL  369 (439)
Q Consensus       346 ~n~g~~~a~----~d~i~~ld~D~~~~~  369 (439)
                      +|.|+..|-    -|.++|-|-|..+..
T Consensus       203 ~NVGf~eAlkd~~wdCfIFHDVDllPen  230 (372)
T KOG3916|consen  203 LNVGFLEALKDYGWDCFIFHDVDLLPEN  230 (372)
T ss_pred             hhhHHHHHHHhcCCCEEEEecccccccC
Confidence            777776553    578999999977643

>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]

Probab=85.01  E-value=1.6  Score=43.32  Aligned_cols=150  Identities=13%  Similarity=0.011  Sum_probs=81.9

Q ss_pred             CcEEEEEecCCCChhHHHHhhh--hhc--cCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc-cCCCccccc
Q psy8674          15 GKVRLIRNTEREGLIRTRSRGA--KES--RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI-DYQTWEFRS   89 (439)
Q Consensus        15 ~~i~~i~~~~n~G~a~arN~G~--~~A--~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~~~~~~~~~   89 (439)
                      .+|-+-+..+|.|. +|=|++=  +.=  .-++.+.||+|..++.+.+-.+++.++.+|.+......... ..+++....
T Consensus       212 ~~ifYRrRr~n~~R-KaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~TL~AR~  290 (736)
T COG2943         212 GNIFYRRRRRNVKR-KAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGDTLYARC  290 (736)
T ss_pred             CceeeehHhhhhcc-cccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcchHHHHH
Confidence            46766666666554 3334431  111  24889999999999999999999999999877554433332 233321111


Q ss_pred             ccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCC--CCCccc----hhhH
Q psy8674          90 VYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPG--LLVWGG----ENFE  163 (439)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~--~~~~~~----ED~D  163 (439)
                      .. -..-..|..-+          .+..+..      ..-..+.|+|-.||.+.|-+.-|..+-  -...|+    -|.-
T Consensus       291 qQ-FatrvYGpl~~----------~GLawW~------~~Es~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfv  353 (736)
T COG2943         291 QQ-FATRVYGPLFT----------AGLAWWQ------LGESHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFV  353 (736)
T ss_pred             HH-HHHHHhchHHh----------hhhHHHh------ccccccccccceeechhhHHhcCCCCCCCCCCCCccccchHHH
Confidence            00 00000010000          0111111      111245789999999999776655321  111122    3444


Q ss_pred             HHHHHHHhCCcEEEecccc
Q psy8674         164 LSFKIWMCGGSIEWVPCSR  182 (439)
Q Consensus       164 l~~Rl~~~G~~i~~~p~~~  182 (439)
                      =+-=++++|+-++..|+..
T Consensus       354 EAALmRRaGW~v~ia~dL~  372 (736)
T COG2943         354 EAALMRRAGWGVWIAYDLD  372 (736)
T ss_pred             HHHHHhhcCceEEEeccCC
Confidence            4455678899887776553

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=85.00  E-value=3.3  Score=37.03  Aligned_cols=68  Identities=12%  Similarity=0.088  Sum_probs=50.0

Q ss_pred             HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc--CcEEEEecCCc-ccCCCchHHHHHHHhcCCCeEe
Q psy8674           4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMT   73 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~--g~~i~flD~D~-~~~~~~l~~l~~~~~~~~~~~v   73 (439)
                      +.+.+++.++  +++++..+...|.+.+.-.|+....  .+.++++++|. .+++..+..+++.+.+.+..++
T Consensus        53 ~~i~~~~~~~--~~~~~~~~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~  123 (229)
T cd02540          53 EQVKKALANP--NVEFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVT  123 (229)
T ss_pred             HHHHHHhCCC--CcEEEECCCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEE
Confidence            4455555554  4777777777788888888877654  68999999999 4688899999988876544433

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=84.88  E-value=9.8  Score=33.69  Aligned_cols=107  Identities=16%  Similarity=0.207  Sum_probs=65.4

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH-HcCCcEEEEEcCCCCCHHHHHHHHHhh
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ-RFNGKVRLIRNTEREGLIRTRSRGAKE  352 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~v~~i~~~~~~g~~~a~n~g~~~  352 (439)
                      .++.. .. ..|..+++.+......+   +|+||-+.....    ....+.. .....+.++...  .+...+...|++.
T Consensus        22 l~~i~-Gk-pll~~~i~~l~~~~~~~---~ivVv~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~si~~al~~   90 (218)
T cd02516          22 FLELG-GK-PVLEHTLEAFLAHPAID---EIVVVVPPDDID----LAKELAKYGLSKVVKIVEGG--ATRQDSVLNGLKA   90 (218)
T ss_pred             eeEEC-Ce-EHHHHHHHHHhcCCCCC---EEEEEeChhHHH----HHHHHHhcccCCCeEEECCc--hHHHHHHHHHHHh
Confidence            34443 45 68889999887643222   677765433222    2222111 112234554332  3567778888887


Q ss_pred             c---CCCEEEEEcCCCc-cCCCChHHHHHhhhcCCC-EEEEeee
Q psy8674         353 S---RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRK-IMTVPVI  391 (439)
Q Consensus       353 a---~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~-~~v~~~~  391 (439)
                      .   ..++++++++|.- ++++.+..+++.+...+. ..+.|..
T Consensus        91 ~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~  134 (218)
T cd02516          91 LPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPVT  134 (218)
T ss_pred             cccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEecc
Confidence            6   4789999999988 589999999998876554 4444543

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=84.52  E-value=12  Score=37.62  Aligned_cols=99  Identities=13%  Similarity=0.095  Sum_probs=65.3

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      .+|..+.  ..|...|+++.+....    +|++|-.... +    .+.++..... .+.++..+...|.+.+...++...
T Consensus        25 l~pi~g~--pli~~~l~~l~~~gi~----~iiiv~~~~~-~----~i~~~~~~~~-~i~~~~~~~~~Gt~~al~~a~~~l   92 (459)
T PRK14355         25 MHPLAGR--PMVSWPVAAAREAGAG----RIVLVVGHQA-E----KVREHFAGDG-DVSFALQEEQLGTGHAVACAAPAL   92 (459)
T ss_pred             eceeCCc--cHHHHHHHHHHhcCCC----eEEEEECCCH-H----HHHHHhccCC-ceEEEecCCCCCHHHHHHHHHHHh
Confidence            5555554  5888888888765322    5666544332 1    2222222221 466766666778888888888776


Q ss_pred             C--CCEEEEEcCCC-ccCCCChHHHHHhhhcCCC
Q psy8674         354 R--GEVIVFLDAHC-EVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       354 ~--~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~  384 (439)
                      .  .+.++++++|. .+++..+.++++.+.....
T Consensus        93 ~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~  126 (459)
T PRK14355         93 DGFSGTVLILCGDVPLLRAETLQGMLAAHRATGA  126 (459)
T ss_pred             hccCCcEEEEECCccCcCHHHHHHHHHHHHhcCC
Confidence            4  47899999998 5678889999988765544

>PLN02190 cellulose synthase-like protein

Probab=84.44  E-value=2.7  Score=44.05  Aligned_cols=55  Identities=20%  Similarity=0.102  Sum_probs=47.5

Q ss_pred             CCCceEEEEEecC---CChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHH
Q psy8674         267 DLPKASVILVFHN---EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE  321 (439)
Q Consensus       267 ~~p~vsiiip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~  321 (439)
                      ++|.|.|.|+|++   |++..+..++-|+++-+||..+.-+.|.|||...-|.+...+
T Consensus        91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~E  148 (756)
T PLN02190         91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKE  148 (756)
T ss_pred             cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHH
Confidence            5799999999999   777888999999999999977778899999999888774443

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=84.37  E-value=9.4  Score=34.21  Aligned_cols=101  Identities=8%  Similarity=0.142  Sum_probs=61.5

Q ss_pred             CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC----CCCCHHHHHHHHHhhc-
Q psy8674         279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT----EREGLIRTRSRGAKES-  353 (439)
Q Consensus       279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~----~~~g~~~a~n~g~~~a-  353 (439)
                      +.. ..+..+++.+.+....+   +|+|+-|   ++.    +.+.+++++..+.+.+.+    ...|...+...|++.. 
T Consensus        22 ~Gk-pLi~~ti~~a~~s~~~d---~IvVstd---~~~----i~~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~   90 (222)
T TIGR03584        22 CGK-PMIAYSIEAALNSGLFD---KVVVSTD---DEE----IAEVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELK   90 (222)
T ss_pred             CCc-CHHHHHHHHHHhCCCCC---EEEEeCC---CHH----HHHHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHh
Confidence            344 68888999887754322   5555322   222    223344443223333222    2345666777777654 


Q ss_pred             ---CCCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEee
Q psy8674         354 ---RGEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       354 ---~~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                         ..|.++++++|.-+ .++.+.++++.+.++....++++
T Consensus        91 ~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv  131 (222)
T TIGR03584        91 LQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSV  131 (222)
T ss_pred             hcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEe
Confidence               36999999999986 79999999999987544444443

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=83.73  E-value=30  Score=30.89  Aligned_cols=97  Identities=12%  Similarity=0.123  Sum_probs=56.5

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEE-EcCCCCCHHHHHHHHHhh
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLI-RNTEREGLIRTRSRGAKE  352 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i-~~~~~~g~~~a~n~g~~~  352 (439)
                      .+|..+.  ..|..+|+++..+...    +++||-. ....... .+.........++.++ ..+...|.+.+.-.|...
T Consensus        23 ll~i~g~--pli~~~l~~l~~~g~~----~ivvv~~-~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~g~~~~l~~a~~~   94 (231)
T cd04183          23 LIEVDGK--PMIEWVIESLAKIFDS----RFIFICR-DEHNTKF-HLDESLKLLAPNATVVELDGETLGAACTVLLAADL   94 (231)
T ss_pred             eeEECCE--EHHHHHHHhhhccCCc----eEEEEEC-hHHhhhh-hHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHHHhh
Confidence            3465564  5888899988875421    5666653 2211111 2222222212234433 234567888888888887


Q ss_pred             cC-CCEEEEEcCCCccCCCChHHHHHh
Q psy8674         353 SR-GEVIVFLDAHCEVGLNWLPPLLAP  378 (439)
Q Consensus       353 a~-~d~i~~ld~D~~~~~~~l~~l~~~  378 (439)
                      .. .+.++++++|..+..+....+..+
T Consensus        95 l~~~~~~lv~~~D~i~~~~~~~~~~~~  121 (231)
T cd04183          95 IDNDDPLLIFNCDQIVESDLLAFLAAF  121 (231)
T ss_pred             cCCCCCEEEEecceeeccCHHHHHHHh
Confidence            64 477888999998877755444333

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []

Probab=83.70  E-value=3.7  Score=37.68  Aligned_cols=117  Identities=15%  Similarity=0.089  Sum_probs=52.5

Q ss_pred             cCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhh
Q psy8674          40 RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKK  119 (439)
Q Consensus        40 ~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (439)
                      .-+|++++|+|+.+...-|..++..+..+....++........... ..            +..                
T Consensus        86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~-~~------------~~~----------------  136 (252)
T PF02434_consen   86 DKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEII-HR------------FNP----------------  136 (252)
T ss_dssp             T-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE------------------------------------------
T ss_pred             CceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceee-cc------------ccc----------------
Confidence            4599999999999987777777776664443333211100000000 00            000                


Q ss_pred             ccCCCCCccCccc-cceEEEEeHHHHHHhC------CCCCCCC-CccchhhHHHHHHHH-hCCcEEEecccceecccccc
Q psy8674         120 RKYNSEPYKSPTH-AGGLFAMDRAFFLELG------GYDPGLL-VWGGENFELSFKIWM-CGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       120 ~~~~~~~~~~~~~-~g~~~~irr~~f~~iG------gfde~~~-~~~~ED~Dl~~Rl~~-~G~~i~~~p~~~v~H~~~~~  190 (439)
                        .........+. .|+.++++|.+..++.      .+-+... +...||..+++-+.. .|.++...|   ..|..++.
T Consensus       137 --~~~~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~---~fhs~~~~  211 (252)
T PF02434_consen  137 --NKSKDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSP---LFHSHLEN  211 (252)
T ss_dssp             -----------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-T---T---SSS-
T ss_pred             --cccCcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeech---hhcccCcc
Confidence              00000111122 4577999999999982      2221111 122599999999988 888765543   45555444

It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface

Probab=83.57  E-value=17  Score=33.00  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=62.0

Q ss_pred             EEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC-----------CC
Q psy8674         273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-----------EG  341 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~-----------~g  341 (439)
                      |++.+=+.-...+..++.|++..+.. ..+.|.|+.++-++...+ .++++.......++++..+..           ..
T Consensus         3 I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~-~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~   80 (248)
T cd04194           3 IVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKK-KLKELLKKYNSSIEFIKIDNDDFKFFPATTDHIS   80 (248)
T ss_pred             EEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHH-HHHHHHHhcCCeEEEEEcCHHHHhcCCccccccc
Confidence            44444433337788889999986652 133888888887766655 777776654445666554221           10


Q ss_pred             -HHHHHHHHHhhc-CCCEEEEEcCCCccCCCChHHHHHh
Q psy8674         342 -LIRTRSRGAKES-RGEVIVFLDAHCEVGLNWLPPLLAP  378 (439)
Q Consensus       342 -~~~a~n~g~~~a-~~d~i~~ld~D~~~~~~~l~~l~~~  378 (439)
                       ...++-.....- .-+-+++||+|..+.. -|..|.+.
T Consensus        81 ~~~y~rl~l~~ll~~~~rvlylD~D~lv~~-di~~L~~~  118 (248)
T cd04194          81 YATYYRLLIPDLLPDYDKVLYLDADIIVLG-DLSELFDI  118 (248)
T ss_pred             HHHHHHHHHHHHhcccCEEEEEeCCEEecC-CHHHHhcC
Confidence             112223333333 3788999999998765 36666654

The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=83.12  E-value=14  Score=37.04  Aligned_cols=99  Identities=11%  Similarity=0.127  Sum_probs=62.4

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      .+|..+ . ..|..+|+++.+....    +++||-.... .    .+.++..... .++++..+...|.+.+...++...
T Consensus        23 ll~v~g-k-pli~~~l~~l~~~g~~----~iivvv~~~~-~----~i~~~~~~~~-~i~~v~~~~~~G~~~sv~~~~~~l   90 (450)
T PRK14360         23 LHPLGG-K-SLVERVLDSCEELKPD----RRLVIVGHQA-E----EVEQSLAHLP-GLEFVEQQPQLGTGHAVQQLLPVL   90 (450)
T ss_pred             cCEECC-h-hHHHHHHHHHHhCCCC----eEEEEECCCH-H----HHHHHhcccC-CeEEEEeCCcCCcHHHHHHHHHHh
Confidence            344444 4 6888899988875432    5555544322 2    2233333322 477776555667777777777664


Q ss_pred             C--CCEEEEEcCCCc-cCCCChHHHHHhhhcCCC
Q psy8674         354 R--GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       354 ~--~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~  384 (439)
                      .  .+.++++++|.. +.+..+..+++.+.....
T Consensus        91 ~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~  124 (450)
T PRK14360         91 KGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNA  124 (450)
T ss_pred             hccCCcEEEEeCCccccCHHHHHHHHHHHHhcCC
Confidence            3  456788999984 578889999988876554

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=83.07  E-value=28  Score=31.29  Aligned_cols=62  Identities=15%  Similarity=0.283  Sum_probs=40.6

Q ss_pred             HHHHHHHHhcCCcEEEEEec--CCCChhHHHHhhhhhccC--cEEEEecCCc-ccCCCchHHHHHHHhcC
Q psy8674           4 KKLEDYIERFNGKVRLIRNT--EREGLIRTRSRGAKESRG--EVIVFLDAHC-EVGLNWLPPLLAPIYSD   68 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~~--~n~G~a~arN~G~~~A~g--~~i~flD~D~-~~~~~~l~~l~~~~~~~   68 (439)
                      +.+.+++.+++  ++++.++  ...|.+.+.. ++....+  +.++++++|+ .+++..|..+++.+..+
T Consensus        52 ~~i~~~~~~~~--~~~~~~~~~~~~gt~~~~~-~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~  118 (239)
T cd02517          52 ERIADAVESFG--GKVVMTSPDHPSGTDRIAE-VAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD  118 (239)
T ss_pred             HHHHHHHHHcC--CEEEEcCcccCchhHHHHH-HHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence            34566666554  5555433  2345554333 3344444  8899999999 67899999999988655

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=83.07  E-value=7.3  Score=39.00  Aligned_cols=97  Identities=11%  Similarity=0.083  Sum_probs=63.3

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      ++|.-+.  ..|..+|+++.+....    +++|+-+.. .+    .++++....  .+.++..+...|.+.+...++...
T Consensus        22 l~~i~gk--pli~~~l~~l~~~g~~----~iiiv~~~~-~~----~i~~~~~~~--~i~~~~~~~~~G~~~ai~~a~~~l   88 (451)
T TIGR01173        22 LHPLAGK--PMLEHVIDAARALGPQ----KIHVVYGHG-AE----QVRKALANR--DVNWVLQAEQLGTGHAVLQALPFL   88 (451)
T ss_pred             hceeCCc--cHHHHHHHHHHhCCCC----eEEEEECCC-HH----HHHHHhcCC--CcEEEEcCCCCchHHHHHHHHHhc
Confidence            4444444  6888889888865432    666654432 22    233333332  366665555678888888888776


Q ss_pred             C-CCEEEEEcCCC-ccCCCChHHHHHhhhcCC
Q psy8674         354 R-GEVIVFLDAHC-EVGLNWLPPLLAPIYSDR  383 (439)
Q Consensus       354 ~-~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~  383 (439)
                      . .+.++++++|. .+++..+..+++.+.+..
T Consensus        89 ~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~  120 (451)
T TIGR01173        89 PDDGDVLVLYGDVPLISAETLERLLEAHRQNG  120 (451)
T ss_pred             CCCCcEEEEECCcCCcCHHHHHHHHHHHhhCC
Confidence            4 47899999998 467888999998876544

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan

Probab=83.05  E-value=2.9  Score=39.78  Aligned_cols=58  Identities=14%  Similarity=0.115  Sum_probs=47.2

Q ss_pred             CCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhc----CCCEEEEeeeeeecC
Q psy8674         339 REGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS----DRKIMTVPVIDGIDY  396 (439)
Q Consensus       339 ~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~----~~~~~v~~~~~~~~~  396 (439)
                      -+-....||.|...|++++++++|.|..+.++.-+.+.+.+..    ...+.|+|....-..
T Consensus       112 ~YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaFE~~~~  173 (317)
T PF13896_consen  112 LYPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAFETREG  173 (317)
T ss_pred             CCChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeeeecccC
Confidence            3557889999999999999999999999999988887776654    344788898865443

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=82.94  E-value=16  Score=31.91  Aligned_cols=103  Identities=7%  Similarity=0.019  Sum_probs=64.2

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH--cC-----CcEEEEEc------CCCC
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR--FN-----GKVRLIRN------TERE  340 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~-----~~v~~i~~------~~~~  340 (439)
                      .+|..+.. ..|..+|+.+.....    .+|+||-+...+.    +.+.+.+.  ++     ..+.++..      +...
T Consensus        23 llpv~g~~-pli~~~l~~l~~~gi----~~iivv~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (200)
T cd02508          23 AVPFGGRY-RLIDFPLSNMVNSGI----RNVGVLTQYKSRS----LNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYR   93 (200)
T ss_pred             eeEECCee-eeHHHHHHHHHHCCC----CEEEEEeCCChHH----HHHHHhCCCcccCCCCCCCEEEeCcccCCCCCccc
Confidence            67777764 578888888877543    2777776654322    22322111  11     12445431      3457


Q ss_pred             CHHHHHHHHHhhcC---CCEEEEEcCCCccCCCChHHHHHhhhcCCCEE
Q psy8674         341 GLIRTRSRGAKESR---GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM  386 (439)
Q Consensus       341 g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~  386 (439)
                      |.+.+...|.....   .+.++++.+|.. .+.-+..+++...+.+..+
T Consensus        94 Gta~al~~a~~~i~~~~~~~~lv~~gD~v-~~~~~~~~l~~~~~~~~~~  141 (200)
T cd02508          94 GTADAIYQNLDYIERSDPEYVLILSGDHI-YNMDYREMLDFHIESGADI  141 (200)
T ss_pred             CcHHHHHHHHHHHHhCCCCEEEEecCCEE-EecCHHHHHHHHHHcCCCE
Confidence            88888888887653   578889999984 5567889988776655433

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=82.91  E-value=27  Score=31.66  Aligned_cols=159  Identities=13%  Similarity=0.138  Sum_probs=79.3

Q ss_pred             HHHHHHHhcCCcEEEEEec--CCCChhHHHHh--hhhhccCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeeeeeec
Q psy8674           5 KLEDYIERFNGKVRLIRNT--EREGLIRTRSR--GAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVIDG   79 (439)
Q Consensus         5 ~l~~~~~~~~~~i~~i~~~--~n~G~a~arN~--G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~   79 (439)
                      .+.+.++++.  ++++.+.  ...|..+..-.  ++.....++++.+|+|.- ++++.++.+++.+.+....++.+....
T Consensus        50 ~i~~~~~~~g--~~~v~~~~~~~~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~  127 (238)
T TIGR00466        50 SVAQTCQKFG--IEVCMTSKHHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKI  127 (238)
T ss_pred             HHHHHHHHcC--CEEEEeCCCCCChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeec
Confidence            3555666654  5555422  23343222221  111124689999999998 699999999999865433444333332


Q ss_pred             cc------CCCcccccccCCCCccccccccccccccCCCc--hHHHhhccCCCCCcc-CccccceEEEEeHHHHHHhCCC
Q psy8674          80 ID------YQTWEFRSVYEPDHHYRGIFEWGMLYKENELP--EREAKKRKYNSEPYK-SPTHAGGLFAMDRAFFLELGGY  150 (439)
Q Consensus        80 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~g~~~~irr~~f~~iGgf  150 (439)
                      .+      .++.......       ++  ..+.+....++  ....+   ....|.. ..+..-|..++|++.+++.-..
T Consensus       128 ~d~~~~~~p~~vk~v~~~-------~g--~alyfsr~~ip~~R~~~~---~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~  195 (238)
T TIGR00466       128 HDAEEAFNPNAVKVVLDS-------QG--YALYFSRSLIPFDRDFFA---KRQTPVGDNLLRHIGIYGYRAGFIEEYVAW  195 (238)
T ss_pred             CCHHHccCCCceEEEeCC-------CC--eEEEecCCCCCCCCCccc---ccccccccceeEEEEEEeCCHHHHHHHHhC
Confidence            22      1111111000       00  00011111111  00000   0011111 1122445789999999997666


Q ss_pred             CCCCCCccchhhHHHHHHHHhCCcEEEec
Q psy8674         151 DPGLLVWGGENFELSFKIWMCGGSIEWVP  179 (439)
Q Consensus       151 de~~~~~~~ED~Dl~~Rl~~~G~~i~~~p  179 (439)
                      .+.-. --.|..|- +|+.+.|++|....
T Consensus       196 ~~~~l-e~~e~leq-lr~le~g~~i~~~~  222 (238)
T TIGR00466       196 KPCVL-EEIEKLEQ-LRVLYYGEKIHVKI  222 (238)
T ss_pred             CCCcc-cccchhHH-HhhhhcCCceEEEE
Confidence            55542 11255553 89999999988755

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=82.89  E-value=2.5  Score=36.35  Aligned_cols=50  Identities=16%  Similarity=0.202  Sum_probs=42.4

Q ss_pred             cEEEEEec-CCCChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHHHHH
Q psy8674          16 KVRLIRNT-EREGLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPI   65 (439)
Q Consensus        16 ~i~~i~~~-~n~G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~   65 (439)
                      .++++.++ ...|...+...|++..+.+.++++.+|+- ++++.++.+++.+
T Consensus        58 ~~~~v~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~  109 (181)
T cd02503          58 GVPVIPDEPPGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA  109 (181)
T ss_pred             CCcEeeCCCCCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence            36677654 36788999999999988999999999996 6999999999887

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=82.68  E-value=11  Score=33.36  Aligned_cols=104  Identities=17%  Similarity=0.258  Sum_probs=63.6

Q ss_pred             CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc-CCCE
Q psy8674         279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-RGEV  357 (439)
Q Consensus       279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a-~~d~  357 (439)
                      +.. ..|..+++.+......   .+|+||-+....   . .+....... ..+.++....  +...+...|+... ..++
T Consensus        25 ~gk-pll~~~l~~l~~~~~~---~~ivVv~~~~~~---~-~~~~~~~~~-~~~~~~~~~~--~~~~sl~~~l~~~~~~d~   93 (217)
T TIGR00453        25 GGR-PLLEHTLDAFLAHPAI---DEVVVVVSPEDQ---E-FFQKYLVAR-AVPKIVAGGD--TRQDSVRNGLKALKDAEW   93 (217)
T ss_pred             CCe-EHHHHHHHHHhcCCCC---CEEEEEEChHHH---H-HHHHHhhcC-CcEEEeCCCc--hHHHHHHHHHHhCCCCCE
Confidence            345 6888999988764222   267777543211   1 222222211 1244443222  3556777788776 6899


Q ss_pred             EEEEcCCCc-cCCCChHHHHHhhhcCCC-EEEEeeeee
Q psy8674         358 IVFLDAHCE-VGLNWLPPLLAPIYSDRK-IMTVPVIDG  393 (439)
Q Consensus       358 i~~ld~D~~-~~~~~l~~l~~~~~~~~~-~~v~~~~~~  393 (439)
                      ++++++|.- ++++.+..+++.+...+. ..++|..+.
T Consensus        94 vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~  131 (217)
T TIGR00453        94 VLVHDAARPFVPKELLDRLLEALRKAGAAILALPVADT  131 (217)
T ss_pred             EEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccce
Confidence            999999986 589999999998876544 445555443

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>KOG1022|consensus

Probab=82.37  E-value=2.9  Score=41.52  Aligned_cols=114  Identities=15%  Similarity=0.070  Sum_probs=76.9

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT  345 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a  345 (439)
                      ..+...+.||-||++- +.|...+.....-  |. ..+|+||=|.-..+--.+.+....   +..+++....+|.  -..
T Consensus       440 ~~~qgFTlim~TYdR~-d~L~k~v~~ys~v--Ps-L~kIlVVWNnq~k~PP~es~~~~~---~VPlr~r~qkeNs--LnN  510 (691)
T KOG1022|consen  440 GHSQGFTLIMLTYDRV-DLLKKLVKHYSRV--PS-LKKILVVWNNQGKNPPPESLEPDI---AVPLRFRQQKENS--LNN  510 (691)
T ss_pred             CcccceeeeeehHHHH-HHHHHHHHHHhhC--CC-cceEEEEecCCCCCCChhhccccC---CccEEEEehhhhh--hhc
Confidence            4556799999999998 8888888876543  33 348888877411111111222221   2246666665552  223


Q ss_pred             HHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674         346 RSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV  388 (439)
Q Consensus       346 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~  388 (439)
                      +-.-....+.+-|+-+|+|.+++.+.|+--.+..++.++.+|+
T Consensus       511 RF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~lVG  553 (691)
T KOG1022|consen  511 RFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDRLVG  553 (691)
T ss_pred             ccccCcccccceeEEecCceeeecchhHHHHHHHHhCccceec
Confidence            3334455679999999999999999999999999998887666

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=81.71  E-value=18  Score=31.28  Aligned_cols=95  Identities=13%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc-
Q psy8674         275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-  353 (439)
Q Consensus       275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a-  353 (439)
                      ++..+ . ..|...++++..... .   +|+||-+..++.     .+.+.+..  ...++ .....|.......|++.. 
T Consensus        22 l~i~G-k-plI~~vi~~l~~~~i-~---~I~Vv~~~~~~~-----~~~~l~~~--~~~~~-~~~g~G~~~~l~~al~~~~   87 (183)
T TIGR00454        22 IEVCG-R-CLIDHVLSPLLKSKV-N---NIIIATSPHTPK-----TEEYINSA--YKDYK-NASGKGYIEDLNECIGELY   87 (183)
T ss_pred             eEECC-E-EHHHHHHHHHHhCCC-C---EEEEEeCCCHHH-----HHHHHhhc--CcEEE-ecCCCCHHHHHHHHhhccc
Confidence            34444 4 688889998875432 1   666665433332     23333321  12233 356678888999998853 


Q ss_pred             CCCEEEEEcCCCc-cCCCChHHHHHhhhcCC
Q psy8674         354 RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR  383 (439)
Q Consensus       354 ~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~  383 (439)
                      ..+.++++-+|.. +.+..+..+++.+...+
T Consensus        88 ~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~  118 (183)
T TIGR00454        88 FSEPFLVVSSDLINLRSKIIDSIVDYYYCIK  118 (183)
T ss_pred             CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcC
Confidence            3678999999987 58999999999875533

At this time this gene appears to be present only in Archea

>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals

Probab=81.55  E-value=4.2  Score=42.51  Aligned_cols=54  Identities=13%  Similarity=0.100  Sum_probs=44.5

Q ss_pred             CcEEEEEecCCCCh-----hHHHHhhhhhc----cCcEEEEecCCccc-CCCchHHHHHHHhcC
Q psy8674          15 GKVRLIRNTEREGL-----IRTRSRGAKES----RGEVIVFLDAHCEV-GLNWLPPLLAPIYSD   68 (439)
Q Consensus        15 ~~i~~i~~~~n~G~-----a~arN~G~~~A----~g~~i~flD~D~~~-~~~~l~~l~~~~~~~   68 (439)
                      |.+.+|..+++.|+     |+|.|.-++.+    .|+||+-||+|..+ .|..+.+.+-.+.+.
T Consensus       166 P~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~  229 (720)
T PF03552_consen  166 PMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDP  229 (720)
T ss_pred             CeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccC
Confidence            58999999998885     88888887654    69999999999987 688888888777643

The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=81.28  E-value=4.2  Score=44.36  Aligned_cols=94  Identities=9%  Similarity=0.183  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHHh--cCCcCCcceEEEEeCCCC--------hhhHHHHHHHHHH----------HcCCcEEEEEcCCCCC-
Q psy8674         283 SSLMRTVHSIIK--RTPAQYLEEIILVDDFSS--------KADLDQKLEDYIQ----------RFNGKVRLIRNTEREG-  341 (439)
Q Consensus       283 ~~l~~~l~sl~~--q~~~~~~~eiivvdd~s~--------d~t~~~~~~~~~~----------~~~~~v~~i~~~~~~g-  341 (439)
                      +.++.-|+++.+  +..+.   |--+.+||+.        ..+   +++-+.+          +.| .+.++..+++.| 
T Consensus       457 Ee~k~RIe~l~a~~~~~p~---~~~~m~dgt~W~g~~~~dHp~---IiqVll~~~~~~d~~g~~lP-~LVYVSREKRPg~  529 (1079)
T PLN02638        457 EEFKVRINGLVAKAQKVPE---EGWIMQDGTPWPGNNTRDHPG---MIQVFLGHSGGLDTEGNELP-RLVYVSREKRPGF  529 (1079)
T ss_pred             HHHHHHHHHHHhhccccCC---ccccccCCccCCCCCCCCCHH---HHHHHhcCCCcccccccccc-ceEEEecccCCCC
Confidence            556667777763  33332   4456677771        222   3333321          233 567777776655 


Q ss_pred             ----HHHHHHHHHhh----cCCCEEEEEcCCCccC-CCChHHHHHhhhcCC
Q psy8674         342 ----LIRTRSRGAKE----SRGEVIVFLDAHCEVG-LNWLPPLLAPIYSDR  383 (439)
Q Consensus       342 ----~~~a~n~g~~~----a~~d~i~~ld~D~~~~-~~~l~~l~~~~~~~~  383 (439)
                          +++|+|..++.    ++++||+.+|.|..+. |..+.+.+-.|.+..
T Consensus       530 ~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lDp~  580 (1079)
T PLN02638        530 QHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPN  580 (1079)
T ss_pred             CcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcCcc
Confidence                89999999954    5799999999999886 999999999888654

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional

Probab=81.24  E-value=40  Score=32.38  Aligned_cols=107  Identities=12%  Similarity=0.102  Sum_probs=70.1

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC----------
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE----------  338 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~----------  338 (439)
                      ..+.|+..+=+.-...+.-+|.|++..... ..+.+.|++++-+++..+ .+.++.+.++..+.++....          
T Consensus        24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~-~l~~l~~~~~~~i~~~~id~~~~~~~~~~~  101 (334)
T PRK15171         24 NSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQ-RFSALAKQYNTRINIYLINCERLKSLPSTK  101 (334)
T ss_pred             CceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHH-HHHHHHHhcCCeEEEEEeCHHHHhCCcccC
Confidence            457787777655457888899999865432 234899998888877666 77787777665666654321          


Q ss_pred             CCCHH-HHHHHHHhhc--CCCEEEEEcCCCccCCCChHHHHHh
Q psy8674         339 REGLI-RTRSRGAKES--RGEVIVFLDAHCEVGLNWLPPLLAP  378 (439)
Q Consensus       339 ~~g~~-~a~n~g~~~a--~~d~i~~ld~D~~~~~~~l~~l~~~  378 (439)
                      ....+ ..|-...+.-  .-+-++.||+|..+.. .|..|...
T Consensus       102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~-dl~~L~~~  143 (334)
T PRK15171        102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKG-SIKELIDL  143 (334)
T ss_pred             cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecC-CHHHHHhc
Confidence            11221 2232233333  4789999999988765 47777755

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=81.00  E-value=18  Score=33.21  Aligned_cols=104  Identities=13%  Similarity=0.165  Sum_probs=63.5

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHH---H---HHHc--------------CCcEEE
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED---Y---IQRF--------------NGKVRL  333 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~---~---~~~~--------------~~~v~~  333 (439)
                      .+|+.+.  ..|..+|+++.+....    +|+||-+..... +.+.+..   +   ....              +..+.+
T Consensus        25 llpv~gk--pli~~~l~~l~~~gi~----~i~iv~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   97 (267)
T cd02541          25 MLPIVDK--PVIQYIVEEAVAAGIE----DIIIVTGRGKRA-IEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHY   97 (267)
T ss_pred             eeEECCE--EHHHHHHHHHHHCCCC----EEEEEeCCchHH-HHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEE
Confidence            4566664  6888889988875332    666665543221 1112210   0   0000              124556


Q ss_pred             EEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCC--ChHHHHHhhhcCCC
Q psy8674         334 IRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLN--WLPPLLAPIYSDRK  384 (439)
Q Consensus       334 i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~--~l~~l~~~~~~~~~  384 (439)
                      +..+...|.+.+...+......+-++++.+|..+...  .+..+++.......
T Consensus        98 ~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~  150 (267)
T cd02541          98 VRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA  150 (267)
T ss_pred             EEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence            6556668999999999888766777888899877654  58899987754333

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=80.94  E-value=31  Score=32.48  Aligned_cols=103  Identities=14%  Similarity=0.116  Sum_probs=62.5

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHH-------------------HHH--HcCCcEE
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED-------------------YIQ--RFNGKVR  332 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~-------------------~~~--~~~~~v~  332 (439)
                      .+|+.+.  ..|...|+.+......    +|+||-.... +...+.+..                   +..  .+..+++
T Consensus        28 LvpV~gk--PiI~~vl~~l~~~Gi~----~ivivv~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  100 (297)
T TIGR01105        28 MLPIVDK--PMIQYIVDEIVAAGIK----EIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIM  100 (297)
T ss_pred             eeEECCE--EHHHHHHHHHHHCCCC----EEEEEecCCh-HHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEE
Confidence            5666665  4888888888875432    6776665432 222222211                   000  1122467


Q ss_pred             EEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCC-------CChHHHHHhhhcCC
Q psy8674         333 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGL-------NWLPPLLAPIYSDR  383 (439)
Q Consensus       333 ~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~-------~~l~~l~~~~~~~~  383 (439)
                      ++..++..|.+.|.-.+......+-++++.+|..+++       -.+..|++...+..
T Consensus       101 ~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~  158 (297)
T TIGR01105       101 NVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETG  158 (297)
T ss_pred             EeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhC
Confidence            7777778999999999988775443444458877654       26778888765433

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=80.69  E-value=8.9  Score=34.32  Aligned_cols=90  Identities=16%  Similarity=0.313  Sum_probs=57.9

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC--CCCHHHHHHHHHh
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--REGLIRTRSRGAK  351 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~g~~~a~n~g~~  351 (439)
                      .+|.-+ . ..|...|.++.+....    +|+||-.. ...    .+.++.... ..+.++.++.  ..|.+.+...+..
T Consensus        23 l~~~~g-~-~li~~~l~~l~~~gi~----~i~vv~~~-~~~----~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~   90 (229)
T cd02523          23 LLEING-K-PLLERQIETLKEAGID----DIVIVTGY-KKE----QIEELLKKY-PNIKFVYNPDYAETNNIYSLYLARD   90 (229)
T ss_pred             eeeECC-E-EHHHHHHHHHHHCCCc----eEEEEecc-CHH----HHHHHHhcc-CCeEEEeCcchhhhCcHHHHHHHHH
Confidence            344444 4 6888899988875322    67766543 222    333333332 2467666543  4778888888888


Q ss_pred             hcCCCEEEEEcCCCccCCCChHHHH
Q psy8674         352 ESRGEVIVFLDAHCEVGLNWLPPLL  376 (439)
Q Consensus       352 ~a~~d~i~~ld~D~~~~~~~l~~l~  376 (439)
                      .. .+.++++++|..+.++.++.++
T Consensus        91 ~~-~~~~lv~~~D~~~~~~~~~~~~  114 (229)
T cd02523          91 FL-DEDFLLLEGDVVFDPSILERLL  114 (229)
T ss_pred             Hc-CCCEEEEeCCEecCHHHHHHHH
Confidence            77 6788999999988776555554

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=80.33  E-value=12  Score=34.25  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc--CCCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES--RGEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a--~~d~i~~  360 (439)
                      ..|..+++.+......   .+|+||-+.....    .++.....++..+.++  ....+.....-.|++..  ..+++++
T Consensus        53 pll~~tl~~~~~~~~i---~~IvVV~~~~~~~----~~~~~~~~~~~~i~~v--~gg~~r~~SV~~gl~~l~~~~~~Vli  123 (252)
T PLN02728         53 PIALYSLYTFARMPEV---KEIVVVCDPSYRD----VFEEAVENIDVPLKFA--LPGKERQDSVFNGLQEVDANSELVCI  123 (252)
T ss_pred             EHHHHHHHHHHhCCCC---CeEEEEeCHHHHH----HHHHHHHhcCCceEEc--CCCCchHHHHHHHHHhccCCCCEEEE
Confidence            5778888887753222   2777776533221    3333333433334443  23334556677777765  3578888


Q ss_pred             EcCCCc-cCCCChHHHHHhhhcCCC-EEEEeeeeee
Q psy8674         361 LDAHCE-VGLNWLPPLLAPIYSDRK-IMTVPVIDGI  394 (439)
Q Consensus       361 ld~D~~-~~~~~l~~l~~~~~~~~~-~~v~~~~~~~  394 (439)
                      .|++-- ++++.+..+++....... +.+.|..+.+
T Consensus       124 hDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~dti  159 (252)
T PLN02728        124 HDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATI  159 (252)
T ss_pred             ecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchhhE
Confidence            888655 578999999998877654 3344555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	439
2d7i_A	570	Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac		7e-49
2d7i_A	570	Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac		8e-47
1xhb_A	472	The Crystal Structure Of Udp-Galnac: Polypeptide Al		2e-45
2ffu_A	501	Crystal Structure Of Human Ppgalnact-2 Complexed Wi		5e-39
2ffu_A	501	Crystal Structure Of Human Ppgalnact-2 Complexed Wi		5e-36

>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And Mn2+ Length = 570

Iteration: 1
 Score =  191 bits (485), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 125/187 (66%), Gaps = 5/187 (2%)
Query: 2   LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPL 61
           L K LEDY+  F   VR++R  +REGLIRTR  GA  + G+VI FLD+HCE  +NWLPPL
Sbjct: 159 LKKPLEDYMALFPS-VRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPL 217
Query: 62  LAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK 121
           L  I  +RK +  P+ID ID+   +FR   +     RG F+W M YK   +P    K   
Sbjct: 218 LDRIARNRKTIVCPMIDVIDHD--DFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADP 275
Query: 122 YNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCS 181
             S+P++SP  AGGLFA+DR +F ELGGYDPGL +WGGE +E+SFK+WMCGG +E +PCS
Sbjct: 276 --SDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCS 333
Query: 182 RIVSLIR 188
           R+  + R
Sbjct: 334 RVGHIYR 340

>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And Mn2+ Length = 570

Iteration: 1
 Score =  184 bits (467), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 96/210 (45%), Positives = 133/210 (63%), Gaps = 5/210 (2%)
Query: 218 YHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVF 277
           Y + +A R   D +  E G N+  S+ IS +R++PD+R   C    Y   LP  S+I+ F
Sbjct: 63  YPMTDAERV--DQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNTSIIIPF 120
Query: 278 HNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT 337
           HNEG+SSL+RTVHS++ R+P + + EI+LVDDFS +  L + LEDY+  F   VR++R  
Sbjct: 121 HNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPS-VRILRTK 179
Query: 338 EREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQ 397
           +REGLIRTR  GA  + G+VI FLD+HCE  +NWLPPLL  I  +RK +  P+ID ID+ 
Sbjct: 180 KREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHD 239
Query: 398 TWEFRSVYEPDHHYRGIFEWGMLYKENELP 427
             +FR   +     RG F+W M YK   +P
Sbjct: 240 --DFRYETQAGDAMRGAFDWEMYYKRIPIP 267

>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1 Length = 472

Iteration: 1
 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 129/198 (65%), Gaps = 3/198 (1%)
Query: 241 TSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQY 300
            S  I+ +R++PD+R+E CK   YP +LP  SV++VFHNE +S+L+RTVHS+I R+P   
Sbjct: 1   ASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHM 60
Query: 301 LEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVF 360
           +EEI+LVDD S +  L + LE Y+++    V +IR  +R GLIR R +GA  SRG+VI F
Sbjct: 61  IEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITF 120
Query: 361 LDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGML 420
           LDAHCE    WL PLLA I  DR+ +  P+ID I   T+E+ +    D  Y G F W + 
Sbjct: 121 LDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMA--GSDMTYGG-FNWKLN 177
Query: 421 YKENELPEREAKKRKYNR 438
           ++   +P+RE  +RK +R
Sbjct: 178 FRWYPVPQREMDRRKGDR 195

>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp And Ea2 Length = 501

Iteration: 1
 Score =  158 bits (400), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/174 (42%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 16  KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP 75
           KVR++RN  REGL+R+R RGA  ++ +V+ FLD+HCE   +WL PLL  +  DR  +  P
Sbjct: 122 KVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSP 181
Query: 76  VIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNS-EPYKSPTHAG 134
           +ID I+   +++          +G F+W +++K + +   + + R+ N   P K+P  AG
Sbjct: 182 IIDVINMDNFQYVGA---SADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAG 238
Query: 135 GLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIR 188
           GLF MD+ +F ELG YD  + VWGGEN E+SF++W CGGS+E +PCSR+  + R
Sbjct: 239 GLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFR 292

>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp And Ea2 Length = 501

Iteration: 1
 Score =  148 bits (374), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 123/200 (61%), Gaps = 8/200 (4%)
Query: 238 NMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTP 297
           N   S+ +  DR IPD R ++C+   + +DLP  SV++ FHNE  S+L+RTV S++K++P
Sbjct: 35  NQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSP 94
Query: 298 AQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEV 357
              ++EIILVDD+S+  + D  L   I+    KVR++RN  REGL+R+R RGA  ++ +V
Sbjct: 95  PHLIKEIILVDDYSNDPE-DGALLGKIE----KVRVLRNDRREGLMRSRVRGADAAQAKV 149
Query: 358 IVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEW 417
           + FLD+HCE   +WL PLL  +  DR  +  P+ID I+   +++          +G F+W
Sbjct: 150 LTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGA---SADLKGGFDW 206
Query: 418 GMLYKENELPEREAKKRKYN 437
            +++K + +   + + R+ N
Sbjct: 207 NLVFKWDYMTPEQRRSRQGN 226

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	439
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	2e-75
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	2e-62
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	2e-75
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	7e-61
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	1e-73
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	2e-57
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	1e-16
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	2e-06
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	6e-09
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	2e-07
2nxv_A	249	ATP synthase subunits region ORF 6; majastridin, A	1e-04

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Length = 472

 Score =  242 bits (619), Expect = 2e-75
 Identities = 89/197 (45%), Positives = 128/197 (64%), Gaps = 3/197 (1%)

Query: 242 SNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYL 301
           S  I+ +R++PD+R+E CK   YP +LP  SV++VFHNE +S+L+RTVHS+I R+P   +
Sbjct: 2   SEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMI 61

Query: 302 EEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFL 361
           EEI+LVDD S +  L + LE Y+++    V +IR  +R GLIR R +GA  SRG+VI FL
Sbjct: 62  EEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFL 121

Query: 362 DAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY 421
           DAHCE    WL PLLA I  DR+ +  P+ID I   T+E+ +  +      G F W + +
Sbjct: 122 DAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSD---MTYGGFNWKLNF 178

Query: 422 KENELPEREAKKRKYNR 438
           +   +P+RE  +RK +R
Sbjct: 179 RWYPVPQREMDRRKGDR 195

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Length = 472

 Score =  208 bits (531), Expect = 2e-62
 Identities = 83/184 (45%), Positives = 119/184 (64%), Gaps = 4/184 (2%)

Query: 2   LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPL 61
           L + LE Y+++    V +IR  +R GLIR R +GA  SRG+VI FLDAHCE    WL PL
Sbjct: 76  LKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPL 135

Query: 62  LAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK 121
           LA I  DR+ +  P+ID I   T+E+ +  +      G F W + ++   +P+RE  +RK
Sbjct: 136 LARIKHDRRTVVCPIIDVISDDTFEYMAGSD---MTYGGFNWKLNFRWYPVPQREMDRRK 192

Query: 122 YN-SEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPC 180
            + + P ++PT AGGLF++DR +F E+G YD G+ +WGGEN E+SF+IW CGG++E V C
Sbjct: 193 GDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTC 252

Query: 181 SRIV 184
           S + 
Sbjct: 253 SHVG 256

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Length = 570

 Score =  245 bits (625), Expect = 2e-75
 Identities = 99/238 (41%), Positives = 142/238 (59%), Gaps = 5/238 (2%)

Query: 202 PPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKY 261
              +  + G GE G+ Y + +A R   D +  E G N+  S+ IS +R++PD+R   C  
Sbjct: 47  IRRDAQRVGNGEQGRPYPMTDAERV--DQAYRENGFNIYVSDKISLNRSLPDIRHPNCNS 104

Query: 262 WDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE 321
             Y   LP  S+I+ FHNEG+SSL+RTVHS++ R+P + + EI+LVDDFS +  L + LE
Sbjct: 105 KRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE 164

Query: 322 DYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 381
           DY+  F   VR++R  +REGLIRTR  GA  + G+VI FLD+HCE  +NWLPPLL  I  
Sbjct: 165 DYMALFP-SVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIAR 223

Query: 382 DRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNRY 439
           +RK +  P+ID ID+  + + +        RG F+W M YK   +P    K    + +
Sbjct: 224 NRKTIVCPMIDVIDHDDFRYETQ--AGDAMRGAFDWEMYYKRIPIPPELQKADPSDPF 279

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Length = 570

 Score =  206 bits (525), Expect = 7e-61
 Identities = 93/183 (50%), Positives = 122/183 (66%), Gaps = 5/183 (2%)

Query: 1   DLDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPP 60
            L K LEDY+  F   VR++R  +REGLIRTR  GA  + G+VI FLD+HCE  +NWLPP
Sbjct: 158 HLKKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPP 216

Query: 61  LLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKR 120
           LL  I  +RK +  P+ID ID+  + + +        RG F+W M YK   +P    K  
Sbjct: 217 LLDRIARNRKTIVCPMIDVIDHDDFRYETQ--AGDAMRGAFDWEMYYKRIPIPPELQKAD 274

Query: 121 KYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPC 180
              S+P++SP  AGGLFA+DR +F ELGGYDPGL +WGGE +E+SFK+WMCGG +E +PC
Sbjct: 275 P--SDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPC 332

Query: 181 SRI 183
           SR+
Sbjct: 333 SRV 335

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Length = 501

 Score =  238 bits (608), Expect = 1e-73
 Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 8/234 (3%)

Query: 205 EPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDY 264
           +  K    +  +  ++      +G         N   S+ +  DR IPD R ++C+   +
Sbjct: 2   DALKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQW 61

Query: 265 PLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYI 324
            +DLP  SV++ FHNE  S+L+RTV S++K++P   ++EIILVDD+S+  +    L    
Sbjct: 62  RVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKI- 120

Query: 325 QRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK 384
                KVR++RN  REGL+R+R RGA  ++ +V+ FLD+HCE   +WL PLL  +  DR 
Sbjct: 121 ----EKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRT 176

Query: 385 IMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNR 438
            +  P+ID I+   +++          +G F+W +++K + +   + + R+ N 
Sbjct: 177 RVVSPIIDVINMDNFQYVGASA---DLKGGFDWNLVFKWDYMTPEQRRSRQGNP 227

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Length = 501

 Score =  196 bits (498), Expect = 2e-57
 Identities = 74/182 (40%), Positives = 113/182 (62%), Gaps = 4/182 (2%)

Query: 8   DYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS 67
             +     KVR++RN  REGL+R+R RGA  ++ +V+ FLD+HCE   +WL PLL  +  
Sbjct: 114 GALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAE 173

Query: 68  DRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYN-SEP 126
           DR  +  P+ID I+   +++          +G F+W +++K + +   + + R+ N   P
Sbjct: 174 DRTRVVSPIIDVINMDNFQYVGASA---DLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAP 230

Query: 127 YKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSL 186
            K+P  AGGLF MD+ +F ELG YD  + VWGGEN E+SF++W CGGS+E +PCSR+  +
Sbjct: 231 IKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHV 290

Query: 187 IR 188
            R
Sbjct: 291 FR 292

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625

 Score = 81.5 bits (201), Expect = 1e-16
 Identities = 54/372 (14%), Positives = 109/372 (29%), Gaps = 61/372 (16%)

Query: 7   EDYIERF--NGKVRLIRNTER-EGLIRTRSRGAKESRGEVIVFLDA-------HCEVGLN 56
           E+ +  F     ++ +R  +    L   R+ G + ++   +  LD          +  + 
Sbjct: 138 EEIVREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYME 197

Query: 57  WLP--PLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY-KENELP 113
            L     +A I   + I T               +          +          +   
Sbjct: 198 LLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRI 257

Query: 114 EREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGG 173
           E                  +GG  A  + +    G +D     WGGE+ E  ++++  G 
Sbjct: 258 EHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGC 317

Query: 174 SIEWVPCSRIVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLG 233
               V  +                                   AYH        G  +  
Sbjct: 318 YFRSVEGAM----------------------------------AYH----QEPPGKENET 339

Query: 234 EYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSII 293
           +       +  +   +     R +E         +P  S+ +  +N     ++R V S +
Sbjct: 340 DRAAGKNITVQLLQQKVPYFYRKKEKIESATLKRVPLVSIYIPAYN-CSKYIVRCVESAL 398

Query: 294 KRTPAQYLE--EIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAK 351
                Q +   E+ + DD S+   L   L+++      +VR I   + +G+    +   +
Sbjct: 399 ----NQTITDLEVCICDDGSTDDTLR-ILQEHYANHP-RVRFISQ-KNKGIGSASNTAVR 451

Query: 352 ESRGEVIVFLDA 363
             RG  I  LD+
Sbjct: 452 LCRGFYIGQLDS 463

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 248 DRTIPDLRMEECKYWDYPLDLPKASVIL-VFHNEGFSSLMRTVHSIIK-RTPAQYLEEII 305
           D      R E   Y    L +   S+++  ++      L  T+  +   +T   Y  E+I
Sbjct: 72  DYVWAGKRKELDDYPRKQLIIDGLSIVIPTYNRAKI--LAITLACLCNQKTIYDY--EVI 127

Query: 306 LVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER-EGLIRTRSRGAKESRGEVIVFLDA 363
           + DD S + ++++ + ++       ++ +R  +    L   R+ G + ++   +  LD 
Sbjct: 128 VADDGSKE-NIEEIVREFESL--LNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDC 183

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Length = 729

 Score = 57.3 bits (138), Expect = 6e-09
 Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 269 PKASVILVFHN-EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF 327
            K ++I+ ++N E +  +   + SI ++    +   +I+V+D  S     + +++ I+ +
Sbjct: 2   NKLTIIVTYYNAEEY--ITGCLESIKQQRTQDF--NLIIVND-GSTDQSKKLMDEAIKDY 56

Query: 328 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDA 363
           +  +R I   E  G    R+   +E      +FLDA
Sbjct: 57  DKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDA 92

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Length = 255

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 20/108 (18%), Positives = 49/108 (45%), Gaps = 24/108 (22%)

Query: 269 PKASVILVFHN-EGFSSLMRTVHSIIKRTPAQYLE-EIILVDDFSSKADLD---QKLEDY 323
           PK SVI+  +N   +  + +++ SI+ +T   + + E+ ++DD S+    +     +  +
Sbjct: 1   PKVSVIMTSYNKSDY--VAKSISSILSQT---FSDFELFIMDDNSN----EETLNVIRPF 51

Query: 324 IQRFNGKVRLIRN--------TEREGLIRTRSRGAKESRGEVIVFLDA 363
           +   + +VR  ++        TE+       ++  + + GE I +   
Sbjct: 52  LN--DNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATD 97

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A* Length = 249

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 19/168 (11%), Positives = 42/168 (25%), Gaps = 19/168 (11%)

Query: 19  LIRNTEREGLIRTRS--RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV 76
              N E           +     +G  ++F     E+       L+A I +  +     +
Sbjct: 51  AADNREGNQFHGFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWL 110

Query: 77  IDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGL 136
           + G+    W   +             +G               R+  + P +  +     
Sbjct: 111 VAGVAGSPWRPLNHSVTAQALHISDVFG-------------NDRRRGNVPCRVESLDECF 157

Query: 137 FAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIV 184
             M R   +       G   +     +L  +    GG   +     + 
Sbjct: 158 LLMRRLKPVLNSYDMQG---FHYYGADLCLQAEFLGGRA-YAIDFHLH 201

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	439
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	100.0
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	99.97
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	99.96
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	99.96
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	99.95
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	99.94
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	99.93
3bcv_A	240	Putative glycosyltransferase protein; protein stru	99.89
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	99.87
3bcv_A	240	Putative glycosyltransferase protein; protein stru	99.86
4fix_A	657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	99.82
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	99.8
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	99.78
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	99.77
2nxv_A	249	ATP synthase subunits region ORF 6; majastridin, A	99.77
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	99.76
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	99.74
4fix_A	657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	99.72
4hg6_A	802	Cellulose synthase subunit A; membrane translocati	99.7
2fy7_A	287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	99.69
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	99.65
4hg6_A	802	Cellulose synthase subunit A; membrane translocati	99.62
2nxv_A	249	ATP synthase subunits region ORF 6; majastridin, A	99.56
2wvl_A	391	Mannosyl-3-phosphoglycerate synthase; GT-A fold, t	99.52
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	99.47
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	99.47
2fy7_A	287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	99.35
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	99.33
2zu9_A	394	Mannosyl-3-phosphoglycerate synthase; GT-A fold, g	99.33
1fo8_A	343	Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl	99.06
3lw6_A	287	FI08434P, beta-4-galactosyltransferase 7; protein-	98.94
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	98.62
2c0n_A	203	A197; thermophil protein, thermophilic virus, STIV	98.23
1fo8_A	343	Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl	97.49
2wvl_A	391	Mannosyl-3-phosphoglycerate synthase; GT-A fold, t	97.25
1omz_A	293	Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; ro	95.6
2d0j_A	246	Galactosylgalactosylxylosylprotein 3-beta- glucuro	95.44
3cu0_A	281	Galactosylgalactosylxylosylprotein 3-beta- glucuro	94.9
1v84_A	253	Galactosylgalactosylxylosylprotein 3-beta- glucuro	94.45
2zu9_A	394	Mannosyl-3-phosphoglycerate synthase; GT-A fold, g	94.25
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	93.94
3lw6_A	287	FI08434P, beta-4-galactosyltransferase 7; protein-	93.8
2c0n_A	203	A197; thermophil protein, thermophilic virus, STIV	93.26
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	93.11
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	93.07
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	93.04
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	92.42
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	92.39
3tzt_A	276	Glycosyl transferase family 8; structural genomics	92.17
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	91.63
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	91.35
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	91.1
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	90.91
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	90.87
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	90.41
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	90.32
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	89.99
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	89.83
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	89.49
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	88.91
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	88.61
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	88.55
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	87.8
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	87.09
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	86.96
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	86.74
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	86.41
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	86.37
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	86.08
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	86.02
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	85.77
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	85.67
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	85.46
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	85.18
1g9r_A	311	Glycosyl transferase; alpha-beta structure; HET: U	84.92
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	84.9
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	84.87
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	83.98
3pnn_A	303	Conserved domain protein; structural genomics, PSI	83.66
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	82.82
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	81.87
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	81.85
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	81.13
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	80.7
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	80.19

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=100.00  E-value=2.1e-42  Score=359.38  Aligned_cols=338  Identities=17%  Similarity=0.189  Sum_probs=230.9

Q ss_pred             CcEEEEEecCC-CChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccc---
Q psy8674          15 GKVRLIRNTER-EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSV---   90 (439)
Q Consensus        15 ~~i~~i~~~~n-~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---   90 (439)
                      ++++++.++.+ .|.++|+|.|++.|+|+||+|+|+|+.++|+||+.+++.+.+++..++.+...............   
T Consensus       148 ~~i~~i~~~~~~~g~~~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  227 (625)
T 2z86_A          148 LNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQ  227 (625)
T ss_dssp             SCEEEEEECCCSCCHHHHHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHS
T ss_pred             CCeEEEEeCCCCcchhHHHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccc
Confidence            37999987653 46999999999999999999999999999999999999999877765554443332222100000   


Q ss_pred             ---------cCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchh
Q psy8674          91 ---------YEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGEN  161 (439)
Q Consensus        91 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED  161 (439)
                               ........+.+.......|.  ...................+.|+|+++||++|+++|||||.++.||+||
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED  305 (625)
T 2z86_A          228 KSLINEIPEIITNNQVAGKVEQNKSVDWR--IEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGED  305 (625)
T ss_dssp             TTGGGTSCC---------------CCCTH--HHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHH
T ss_pred             hHHhhhcchhccCCchhhhhccCCccccc--hhhhcccccccccCCceeEEeeceeeeEHHHHHHhCCCccccccCCcch
Confidence                     00000000100000000000  0000000011122234446789999999999999999999999888899


Q ss_pred             hHHHHHHHHhCCcEEEecccceecccccccccCCcCCCCCCCCCCCCCCCCCCCccccCcHhHHhhhhhhhhhcccceec
Q psy8674         162 FELSFKIWMCGGSIEWVPCSRIVSLIRPVFKADGKLGNLEPPLEPYKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMET  241 (439)
Q Consensus       162 ~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~  241 (439)
                      +||++|++++|+++.++|.+.++|..++.......               ...++.          ....+.....    
T Consensus       306 ~dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~~~~~~---------------~~~~~~----------i~~~~~~~~~----  356 (625)
T 2z86_A          306 NEFGYRLYREGCYFRSVEGAMAYHQEPPGKENETD---------------RAAGKN----------ITVQLLQQKV----  356 (625)
T ss_dssp             HHHHHHHHHTTCEEEECGGGCEEEECCC-----------------------------------------CTTTTTC----
T ss_pred             hhhhhhHHhCCceEEEcccchhhccCCccccchhh---------------hhhccc----------chhhhcccCc----
Confidence            99999999999999999999999998766443210               000000          0000000000    


Q ss_pred             ccccCCCCCCCcccccccccccCCCCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHH
Q psy8674         242 SNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLE  321 (439)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~  321 (439)
                         ....|....      ......+.+|+||||||+||+. +.|.+||+|+++|+++++  |||||||||+|+|.+ +++
T Consensus       357 ---~~~~rk~~~------~~~~~~~~~~~vsiii~~yn~~-~~l~~~l~s~~~q~~~~~--eiivvdd~S~d~t~~-~~~  423 (625)
T 2z86_A          357 ---PYFYRKKEK------IESATLKRVPLVSIYIPAYNCS-KYIVRCVESALNQTITDL--EVCICDDGSTDDTLR-ILQ  423 (625)
T ss_dssp             ---TTTTCCCCC------TTTCCCCSSCSEEEEEEESSCT-TTHHHHHHHHHSSSCCSE--EEEEEEESCSSSHHH-HHH
T ss_pred             ---ceEEecccc------cccchhccCCeEEEEEeCCCCH-HHHHHHHHHHHhCcCCCe--EEEEEECcCChhHHH-HHH
Confidence               000111100      0011124578999999999999 999999999999999877  999999999999987 888


Q ss_pred             HHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCC-CEEEEeeeeeecCCC
Q psy8674         322 DYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQT  398 (439)
Q Consensus       322 ~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~~  398 (439)
                      ++.+..+ +++++. .+|.|.+.++|.|++.|+||||+|+|+|+.+.|++|+.+++.+..++ .+++++....++.+.
T Consensus       424 ~~~~~~~-~i~~~~-~~n~G~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~  499 (625)
T 2z86_A          424 EHYANHP-RVRFIS-QKNKGIGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDREG  499 (625)
T ss_dssp             HHHTTCT-TEEEEE-ECCCCHHHHHHHHHHHCCSSEEEECCTTCEECTTHHHHHHHHHHHCTTCSEEEEEEEEECTTS
T ss_pred             HHHhhCC-cEEEEe-CCCCCHHHHHHHHHHhcCCCEEEEECCCcccChhHHHHHHHHHHhCCCeeEEEeeeEEECCCC
Confidence            8876655 799986 78999999999999999999999999999999999999999997654 466767665555544

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=99.97  E-value=5.8e-30  Score=261.66  Aligned_cols=218  Identities=45%  Similarity=0.837  Sum_probs=192.1

Q ss_pred             CCCCCCCCCccccCcHhHHhhhhhhhhhcccceecccccCCCCCCCcccccccccccCCCCCCceEEEEEecCCChhHHH
Q psy8674         207 YKEGPGEGGKAYHLPEAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLM  286 (439)
Q Consensus       207 ~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vsiiip~~n~~~~~l~  286 (439)
                      .+.++|+.|+++.+++...  .++.+++++||.++|+.+++.|.+|+.+++.|....++..+|+||||||+||+.++.|.
T Consensus        52 ~~~~~g~~g~~~~~~~~~~--~~~~~~~~~~n~~~sd~i~l~R~~~d~r~~~~~~~~~~~~~P~vSVIIp~yNe~~~~L~  129 (570)
T 2d7i_A           52 QRVGNGEQGRPYPMTDAER--VDQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNTSIIIPFHNEGWSSLL  129 (570)
T ss_dssp             TCCSTTGGGCCCCCCTTTT--SSHHHHTTSSCHHHHHTSCTTCCCCCCSCGGGGTCCEESSCCCEEEEEEESSCCHHHHH
T ss_pred             cCCCCCCCCCceECCHHHH--HHHHHHHcCCCHHHHhccCCCccCCCCCCccceecccCCCCCCeEEEEEECCCCHHHHH
Confidence            3467788888887765433  36779999999999999999999999999999988888889999999999999768999


Q ss_pred             HHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCc
Q psy8674         287 RTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCE  366 (439)
Q Consensus       287 ~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~  366 (439)
                      +||+|+++|+++++.+|||||||||+|+|+.++++++.+.++ ++++++.++|.|++.|+|.|++.|+||||+|||+|+.
T Consensus       130 ~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~gd~i~fLD~D~~  208 (570)
T 2d7i_A          130 RTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCE  208 (570)
T ss_dssp             HHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTST-TEEEEECSSCCCHHHHHHHHHHHCCSSEEEECCSSEE
T ss_pred             HHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCC-eEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcCCcc
Confidence            999999999988655699999999999994338998887765 8999999999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCCCCCceeeeeccceeEeecCCHH
Q psy8674         367 VGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPER  429 (439)
Q Consensus       367 ~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~  429 (439)
                      +.|+||+.+++.+.+++..+++|.++.++.+++.|....  ....++.|+|.+.+.+..+...
T Consensus       209 ~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  269 (570)
T 2d7i_A          209 ANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQA--GDAMRGAFDWEMYYKRIPIPPE  269 (570)
T ss_dssp             ECTTCSHHHHHHHHHCTTEEEEEEEEEECTTTCCEECCT--TSSCEEEECTTCCEEEECCCTT
T ss_pred             ccccHHHHHHHHHHhCCCEEEeeeeeccCCCchhhcccc--CCcccccccccccccccccchh
Confidence            999999999999999999999999999999999887431  2356799999999988877653

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=99.96  E-value=1.1e-28  Score=247.42  Aligned_cols=191  Identities=46%  Similarity=0.802  Sum_probs=167.2

Q ss_pred             cccccCCCCCCCcccccccccccCCCCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChh-hHHHH
Q psy8674         241 TSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKA-DLDQK  319 (439)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~-t~~~~  319 (439)
                      +|+++++.|.+|+.|++.|....++..+|+||||||+||++++.|.+||+|+++|++++..+|||||||||+|+ |.+ +
T Consensus         1 ~s~~~~~~r~~~d~r~~~c~~~~~~~~~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~-~   79 (472)
T 1xhb_A            1 ASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKR-P   79 (472)
T ss_dssp             -------CCCCCCCSCGGGGTCCCCSCCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTH-H
T ss_pred             CCccccCCCCCCCCCChhhccCcCCcCCCCeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHH-H
Confidence            47899999999999999999999999999999999999997789999999999999887456999999999996 665 8


Q ss_pred             HHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCc
Q psy8674         320 LEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTW  399 (439)
Q Consensus       320 ~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~  399 (439)
                      ++++.+.++.++++++.++|.|++.|+|.|++.|+||||+|||+|+.++|+||+.+++.+.+++..+++|.++.++.+++
T Consensus        80 l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~~~~~~~~~  159 (472)
T 1xhb_A           80 LESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTF  159 (472)
T ss_dssp             HHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSC
T ss_pred             HHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeeeeeEcCCCc
Confidence            99988876647999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCCCCceeeeeccceeEeecCCHHHHhhcc
Q psy8674         400 EFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK  435 (439)
Q Consensus       400 ~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~  435 (439)
                      +|...   .....|.|+|.+.+.+..++.+++..+.
T Consensus       160 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (472)
T 1xhb_A          160 EYMAG---SDMTYGGFNWKLNFRWYPVPQREMDRRK  192 (472)
T ss_dssp             CEECC---CTTEEEEECTTCCEEEEECCHHHHHHTT
T ss_pred             eeccC---CCcccceeeccceeecccCCHHHHhccc
Confidence            98633   3456799999999999999988876553

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=99.96  E-value=2e-29  Score=254.63  Aligned_cols=205  Identities=35%  Similarity=0.712  Sum_probs=181.8

Q ss_pred             HhHHhhhhhhhhhcccceecccccCCCCCCCcccccccccccCCCCCCceEEEEEecCCChh-HHHHHHHHHHhcCCcCC
Q psy8674         222 EAYRAAGDASLGEYGMNMETSNHISFDRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFS-SLMRTVHSIIKRTPAQY  300 (439)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vsiiip~~n~~~~-~l~~~l~sl~~q~~~~~  300 (439)
                      +...+..++.++.+++|.++|+.+++.|.+|+.+++.|....++..+|+||||||+||++ . .|.+||+|+++|++++.
T Consensus        19 ~~~~~~~~~~~~~~~~n~~~s~~i~~~r~~~d~r~~~~~~~~~~~~~p~vSVIIp~yN~~-~~~L~~~l~Sl~~q~~~~~   97 (501)
T 2ffu_A           19 GTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEA-RSALLRTVVSVLKKSPPHL   97 (501)
T ss_dssp             TTCCCTTSCTTTTTSSCHHHHHHSCTTCCCCCCSCGGGGGCCCCSSCCCEEEEEEESSCC-HHHHHHHHHHHHHHSCGGG
T ss_pred             hhhhhhhhhhHHhcCcCHHHHcccCCCCcCCCCChhHhccccCCcCCCCEEEEEEeCcCc-HHHHHHHHHHHHhhCchhh
Confidence            334455667789999999999999999999999999999888888999999999999999 7 99999999999998865


Q ss_pred             cceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674         301 LEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY  380 (439)
Q Consensus       301 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~  380 (439)
                      .+|||||||||+|+|.+..    .+..+ ++++++.++|.|++.|+|.|++.|+||||+|||+|+.++|+||+.|++.+.
T Consensus        98 ~~EIIvVDDgS~D~t~~~~----~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~  172 (501)
T 2ffu_A           98 IKEIILVDDYSNDPEDGAL----LGKIE-KVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVA  172 (501)
T ss_dssp             EEEEEEEECSCSCTHHHHG----GGGBT-TEEEEECSSCCHHHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHH
T ss_pred             ceeEEEEECCCCchHHHHH----HhcCC-CEEEEECCCCcCHHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHH
Confidence            5699999999999986522    23444 799999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEeeeeeecCCCceEEeecCCCCCceeeeeccceeEeecCCHHHHhhcc
Q psy8674         381 SDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK  435 (439)
Q Consensus       381 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~  435 (439)
                      +++..+|+|.++.++.+++.|...   .....|.|.|.+.+.|..++.+++..+.
T Consensus       173 ~~~~~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (501)
T 2ffu_A          173 EDRTRVVSPIIDVINMDNFQYVGA---SADLKGGFDWNLVFKWDYMTPEQRRSRQ  224 (501)
T ss_dssp             HCTTEEEEEEEEEECTTTCCEECB---CSSEEEEECTTCCEEEEECCHHHHHHTS
T ss_pred             hCCCeEEEeeeccCcCCCceeecC---CcccceEeeecCCCccccCCHHHHhhcc
Confidence            999999999999999999988744   2456799999999999999998876654

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=99.95  E-value=5.1e-27  Score=235.44  Aligned_cols=186  Identities=45%  Similarity=0.886  Sum_probs=154.5

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +.+.++++.++++.+|++|++++|.|+++|+|.|++.|+|+||+|||+|++++|+||+.+++.+++++..++++.+..++
T Consensus        76 t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~~~~~  155 (472)
T 1xhb_A           76 LKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVIS  155 (472)
T ss_dssp             GTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeeeeeEc
Confidence            66788999888865899999999999999999999999999999999999999999999999999988888888777776


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhcc-CCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK-YNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      ...+.+...   .....+.+.|.+.+.+..++......+. ....+..++.+.|+++++||++|+++|||||.|++||+|
T Consensus       156 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~E  232 (472)
T 1xhb_A          156 DDTFEYMAG---SDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGE  232 (472)
T ss_dssp             SSSCCEECC---CTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCC
T ss_pred             CCCceeccC---CCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHHcCCCCCcccccCch
Confidence            666554321   2334567778777766665544333222 334577888899999999999999999999999998889


Q ss_pred             hhHHHHHHHHhCCcEEEecccceecccccc
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      |+||++|++++|+++.++|.+.++|..+..
T Consensus       233 D~dl~~R~~~~G~~i~~~p~~~v~H~~~~~  262 (472)
T 1xhb_A          233 NLEISFRIWQCGGTLEIVTCSHVGHVFRKA  262 (472)
T ss_dssp             CSHHHHHHHHTTCEEEEEEEEEEEEEC---
T ss_pred             hHHHHHHHHhcCCeEEEccCcEEEEEccCc
Confidence            999999999999999999999999997664

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=99.94  E-value=2.7e-26  Score=234.55  Aligned_cols=183  Identities=50%  Similarity=1.004  Sum_probs=149.3

Q ss_pred             hHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccC
Q psy8674           3 DKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDY   82 (439)
Q Consensus         3 ~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~   82 (439)
                      .+.++++.++++ +|++|++++|.|+++|+|.|++.|+|+||+|||+|++++|+||+.+++.+.+++..++++.+..++.
T Consensus       160 ~~~l~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~  238 (570)
T 2d7i_A          160 KKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDH  238 (570)
T ss_dssp             THHHHHHHTTST-TEEEEECSSCCCHHHHHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEEEEECT
T ss_pred             HHHHHHHHHhCC-eEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeeeeccCC
Confidence            678889988886 9999999999999999999999999999999999999999999999999999888888888777766


Q ss_pred             CCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhh
Q psy8674          83 QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENF  162 (439)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~  162 (439)
                      .++.+....  .....+.+.|.+.+.+......  ........+..++.+.|+|+++||++|+++|||||+|++||+||+
T Consensus       239 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfDe~~~~~g~ED~  314 (570)
T 2d7i_A          239 DDFRYETQA--GDAMRGAFDWEMYYKRIPIPPE--LQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQY  314 (570)
T ss_dssp             TTCCEECCT--TSSCEEEECTTCCEEEECCCTT--TCCSSTTSCEECSSCCSSSEEEEHHHHHHTTSSCTTCCSSSSHHH
T ss_pred             Cchhhcccc--CCcccccccccccccccccchh--hhccCCCcceecccccceEEEEEHHHHHhcCCCCCcccccCcchH
Confidence            665443310  1223456667655443322211  011223456677888999999999999999999999999988999


Q ss_pred             HHHHHHHHhCCcEEEecccceecccccc
Q psy8674         163 ELSFKIWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       163 Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      ||++|++++|+++.++|.+.|+|.++..
T Consensus       315 dl~~Rl~~~G~~i~~~p~~~v~H~~r~~  342 (570)
T 2d7i_A          315 EISFKVWMCGGRMEDIPCSRVGHIYRKY  342 (570)
T ss_dssp             HHHHHHHHTTCEEEEEEEEEEEECCCSS
T ss_pred             HHHHHHHhCCCeEEEccCeEEEEEcccc
Confidence            9999999999999999999999987644

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=99.93  E-value=5e-26  Score=229.71  Aligned_cols=180  Identities=41%  Similarity=0.855  Sum_probs=150.1

Q ss_pred             HHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCc
Q psy8674           6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTW   85 (439)
Q Consensus         6 l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~   85 (439)
                      +++.+++++ +|++|++++|.|+++|+|.|++.|+|+||+|||+|++++|+||+.+++.+++++..+++|.+..++.+.+
T Consensus       113 ~~~~~~~~~-~v~vi~~~~n~G~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~~~~~~~~~  191 (501)
T 2ffu_A          113 DGALLGKIE-KVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNF  191 (501)
T ss_dssp             HHHGGGGBT-TEEEEECSSCCHHHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECTTTC
T ss_pred             HHHHHhcCC-CEEEEECCCCcCHHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeeeccCcCCCc
Confidence            345556676 8999999999999999999999999999999999999999999999999999888888888777766665


Q ss_pred             ccccccCCCCccccccccccccccCCCchHHHhhcc-CCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHH
Q psy8674          86 EFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRK-YNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFEL  164 (439)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl  164 (439)
                      .+...   .....+.+.|.+.+.|..++......+. ....++..+.+.|+++++||++|+++|||||.+++||+||+||
T Consensus       192 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl  268 (501)
T 2ffu_A          192 QYVGA---SADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEI  268 (501)
T ss_dssp             CEECB---CSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCCTTCCSSSSHHHHH
T ss_pred             eeecC---CcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHHhCCCCccccccCcchHHH
Confidence            54321   2234567777777766666554433333 4456777888899999999999999999999999988899999


Q ss_pred             HHHHHHhCCcEEEecccceeccccc
Q psy8674         165 SFKIWMCGGSIEWVPCSRIVSLIRP  189 (439)
Q Consensus       165 ~~Rl~~~G~~i~~~p~~~v~H~~~~  189 (439)
                      ++|++++|+++.++|.+.|+|.+|.
T Consensus       269 ~~Rl~~~G~~i~~~p~~~v~H~~r~  293 (501)
T 2ffu_A          269 SFRVWQCGGSLEIIPCSRVGHVFRK  293 (501)
T ss_dssp             HHHHHHTTCEEEEEEEEEEEECCCS
T ss_pred             HHHHHhcCCeEEEccCcEEEEEccC
Confidence            9999999999999999999998765

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=99.89  E-value=8.1e-23  Score=185.94  Aligned_cols=118  Identities=23%  Similarity=0.278  Sum_probs=105.9

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHH
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTR  346 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~  346 (439)
                      .+|+||||||+||++ +.|.+||+|+++|+++++  |||||||||+|+|.+ +++++.+..+ ++++++ .+|.|.+.|+
T Consensus         3 ~~p~vsViIp~yn~~-~~l~~~l~Sl~~q~~~~~--eiIvvDd~S~d~t~~-~~~~~~~~~~-~i~~i~-~~n~G~~~a~   76 (240)
T 3bcv_A            3 LIPKVSVIVPIYNVE-KYLDQCVQALLAQTLSDI--EIILIDDESPDNCPK-ICDDYAAQYP-NIKVIH-KKNAGLGMAC   76 (240)
T ss_dssp             CCCSEEEEEEESSCT-TTHHHHHHHHHTCSSSSE--EEEEEECCCSSSHHH-HHHHHHHHCS-SEEEEE-CCCCCHHHHH
T ss_pred             CCCcEEEEEecCCCH-HHHHHHHHHHHhCcCCCe--EEEEEECCCCcCHHH-HHHHHHhhCC-CEEEEE-CCCCChHHHH
Confidence            468999999999999 999999999999999876  999999999999977 9999888766 799996 5799999999


Q ss_pred             HHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEee
Q psy8674         347 SRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       347 n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                      |.|++.|+|+||+|+|+|+.+.|+||+.+++.+++++..++++.
T Consensus        77 N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~  120 (240)
T 3bcv_A           77 NSGLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTG  120 (240)
T ss_dssp             HHHHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC-
T ss_pred             HHHHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEe
Confidence            99999999999999999999999999999999987554444433

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=99.87  E-value=9.1e-22  Score=180.73  Aligned_cols=120  Identities=18%  Similarity=0.329  Sum_probs=108.4

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC--------CCC
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--------ERE  340 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~--------~~~  340 (439)
                      |+||||||+||++ +.|.+||+|+++|+++++  |||||||||+|+|.+ +++++..  ..++++++.+        +|.
T Consensus         1 p~vSViIp~yn~~-~~l~~~l~Sl~~q~~~~~--eiivvDd~S~d~t~~-~~~~~~~--~~~i~~i~~~~~~~~~~~~n~   74 (255)
T 1qg8_A            1 PKVSVIMTSYNKS-DYVAKSISSILSQTFSDF--ELFIMDDNSNEETLN-VIRPFLN--DNRVRFYQSDISGVKERTEKT   74 (255)
T ss_dssp             CCEEEEEEESSCT-TTHHHHHHHHHTCSCCCE--EEEEEECSCCHHHHH-HHGGGGG--STTEEEEECCCCSHHHHHSSC
T ss_pred             CeEEEEEEcCCCH-HHHHHHHHHHHhccCCce--EEEEEECCCCchHHH-HHHHHhh--cCCEEEEeccccccccccccc
Confidence            6899999999999 999999999999999876  999999999999877 8887755  3479999988        899


Q ss_pred             CHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcC-CCEEEEeeeeee
Q psy8674         341 GLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD-RKIMTVPVIDGI  394 (439)
Q Consensus       341 g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~-~~~~v~~~~~~~  394 (439)
                      |.+.++|.|++.|+|+||+|+|+|+.+.|++|+.+++.+.++ ...++++.+..+
T Consensus        75 G~~~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~  129 (255)
T 1qg8_A           75 RYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTY  129 (255)
T ss_dssp             HHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEE
Confidence            999999999999999999999999999999999999999876 557777776655

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=99.86  E-value=1.2e-21  Score=178.26  Aligned_cols=176  Identities=13%  Similarity=0.132  Sum_probs=108.5

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +.+.++++.++++ +|++++ .+|.|+++|+|.|++.|+|+||+|||+|++++|+||+.+++.+++.+.+++.+....+.
T Consensus        48 t~~~~~~~~~~~~-~i~~i~-~~n~G~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~  125 (240)
T 3bcv_A           48 CPKICDDYAAQYP-NIKVIH-KKNAGLGMACNSGLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTGLKRIT  125 (240)
T ss_dssp             HHHHHHHHHHHCS-SEEEEE-CCCCCHHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC------
T ss_pred             HHHHHHHHHhhCC-CEEEEE-CCCCChHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEeeEEEc
Confidence            5677888888887 899997 78999999999999999999999999999999999999999998754454443332222


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCC----ccCccccceEEEEeHHHHHHhC-CCCCCCCC
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEP----YKSPTHAGGLFAMDRAFFLELG-GYDPGLLV  156 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~irr~~f~~iG-gfde~~~~  156 (439)
                      .+....... .........+...      ...  ..........+    ......+|+++++||++|+++| ||||.++.
T Consensus       126 ~~~~~~~~~-~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~  196 (240)
T 3bcv_A          126 MAGIPTGTV-THQKEFKLYKNKN------EIH--TLLKDLIASDPYAREERAIQVSAKVVLYRRNLIEKKHLRFVSERIL  196 (240)
T ss_dssp             ---------------CEEECSHH------HHH--HHHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHHHHTTCCCCCTTTC
T ss_pred             cCCcccccc-ccccccccccCHH------HHH--HHHHHHhhcchhhccccccccchhheeeeHHHHHHcCCccCCCCCc
Confidence            111000000 0000000000000      000  00000000000    0011245788999999999999 99999875


Q ss_pred             ccchhhHHHHHHHHhCCcEEEecccceeccccc
Q psy8674         157 WGGENFELSFKIWMCGGSIEWVPCSRIVSLIRP  189 (439)
Q Consensus       157 ~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~  189 (439)
                      ++ ||+||++|+..+|+++.++|.+.++|..|.
T Consensus       197 ~~-eD~~~~~r~~~~g~~i~~~~~~~~~yr~~~  228 (240)
T 3bcv_A          197 PS-EDLIFNVDVLANSNIVCVLPQTFYNYRTNP  228 (240)
T ss_dssp             TT-HHHHHHHHHHTTCSCEEECC----------
T ss_pred             cC-CCHHHHHHHHHhCCEEEEECCCeEEEEeCC
Confidence            44 999999999999999999999855544433

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*

Probab=99.82  E-value=3.2e-20  Score=191.15  Aligned_cols=174  Identities=14%  Similarity=0.102  Sum_probs=117.4

Q ss_pred             HHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhcc----CcEEEEecCCcccCCCchHHHHHHHhcCCCe-Eeeeeeecc
Q psy8674           6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKI-MTVPVIDGI   80 (439)
Q Consensus         6 l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~----g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~-~v~~~~~~~   80 (439)
                      +.+++++..++|++|.++ |.|+++|+|.|++.|+    +|||+|||+|++++|+||+.+++.++.++.. ++++.+...
T Consensus       231 ~~e~~~~~~~~I~vI~~~-N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~  309 (657)
T 4fix_A          231 FPAAAARLGSRLSIHDQP-NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNL  309 (657)
T ss_dssp             HHHHHHHHGGGEEEEECC-CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEET
T ss_pred             HHHHHHhcCCCEEEEECC-CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecC
Confidence            444555444599999977 9999999999999995    4799999999999999999999999987654 555555443


Q ss_pred             cCCCcccccccCCCCcccccccccc--------ccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCC
Q psy8674          81 DYQTWEFRSVYEPDHHYRGIFEWGM--------LYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDP  152 (439)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde  152 (439)
                      .........  + .....+.+.|..        .+....+..... ..........+.+..|+|+++||++|+++|||| 
T Consensus       310 ~~~~~~~~~--g-~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~-~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd-  384 (657)
T 4fix_A          310 QEPSHLHIM--G-EVVDRSIFMWTAAPHAEYDHDFAEYPLNDNNS-RSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPL-  384 (657)
T ss_dssp             TSTTEECCS--C-EEEETTTTEEEECTTCCSCEETTTSCSSCSSH-HHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCC-
T ss_pred             CCCceeeec--c-cEeccccccccccccccccccccccccccccc-cccccccceeccccchhHhHhhHHHHHHhCCCh-
Confidence            332111100  0 000001111100        000000000000 000111234556788999999999999999999 


Q ss_pred             CCCCccchhhHHHHHHHHhCCcEEEecccceecc
Q psy8674         153 GLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSL  186 (439)
Q Consensus       153 ~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~  186 (439)
                      .+|+++ ||+|||+|++++|++++++|++.|+|.
T Consensus       385 ~~F~~~-ED~Dl~lR~~~~G~ki~~~p~a~V~H~  417 (657)
T 4fix_A          385 PLFIKW-DDADYGLRAAEHGYPTVTLPGAAIWHM  417 (657)
T ss_dssp             SCSSSS-HHHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred             hHhccC-cHHHHHHHHHHcCCeEEEECCEEEEEc
Confidence            566665 999999999999999999999999995

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A

Probab=99.80  E-value=3.8e-20  Score=176.39  Aligned_cols=125  Identities=18%  Similarity=0.189  Sum_probs=101.2

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEE-cCCCCCHHH
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIR-NTEREGLIR  344 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~-~~~~~g~~~  344 (439)
                      ...|+||||||+||++ +.|.+||+|+++|+++. .+|||||||||+|+|.+ +++++..+....++++. .++|.|++.
T Consensus        45 ~~~~~vSViIp~yN~~-~~l~~~l~sl~~q~~~~-~~eiivVDdgS~D~t~~-~~~~~~~~~~~~~~~~~~~~~n~G~~~  121 (329)
T 3ckj_A           45 KAGRTISVVLPALDEE-DTIGSVIDSISPLVDGL-VDELIVLDSGSTDDTEI-RAVAAGARVVSREQALPEVPIRPGKGE  121 (329)
T ss_dssp             TTTCCEEEEEEESSCT-TTHHHHHHHHGGGBTTT-BSEEEEEECSCCSSHHH-HHHHTTCEEEEHHHHCTTSCCCCSHHH
T ss_pred             ccCCcEEEEEeeCCCH-HHHHHHHHHHHHhhCCC-CcEEEEEeCCCCchHHH-HHHHhhhhhccceeeeccCCCCCCHHH
Confidence            3468999999999999 99999999999999874 23999999999999977 77765322111122221 678999999


Q ss_pred             HHHHHHhhcCCCEEEEEcCCCc-cCCCChHHHHHhhhcC-CCEEEEeeeee
Q psy8674         345 TRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSD-RKIMTVPVIDG  393 (439)
Q Consensus       345 a~n~g~~~a~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~-~~~~v~~~~~~  393 (439)
                      |+|.|++.|+|+||+|+|+|+. +.|++|+.+++.+..+ ..++|++....
T Consensus       122 a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~~~  172 (329)
T 3ckj_A          122 ALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYRR  172 (329)
T ss_dssp             HHHHHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEEEC
T ss_pred             HHHHHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEecc
Confidence            9999999999999999999999 8999999999997554 55667766543

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*

Probab=99.78  E-value=1.5e-20  Score=197.90  Aligned_cols=117  Identities=20%  Similarity=0.341  Sum_probs=0.0

Q ss_pred             CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHH
Q psy8674         268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRS  347 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n  347 (439)
                      ||+||||||+||++ +.|.+||+|+++|+++++  |||||||||+|+|.+ +++++.+.++.++++++.++|.|.+.|+|
T Consensus         1 Mp~vSVIIp~yN~~-~~L~~~L~Sll~Qt~~~~--EIIVVDDgStD~t~~-il~~~~~~~~~~i~~i~~~~n~G~~~arN   76 (729)
T 3l7i_A            1 MNKLTIIVTYYNAE-EYITGCLESIKQQRTQDF--NLIIVNDGSTDQSKK-LMDEAIKDYDKNIRFIDLDENSGHAHARN   76 (729)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEEEEEcCCCH-HHHHHHHHHHHhCCCCCe--EEEEEECCCCCcHHH-HHHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence            58899999999999 999999999999999977  999999999999987 99998887666899999999999999999


Q ss_pred             HHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674         348 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP  389 (439)
Q Consensus       348 ~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~  389 (439)
                      .|++.|+|+||+|+|+|+.+.|++|+.+++.+. +...++++
T Consensus        77 ~gi~~A~gdyI~flD~Dd~~~p~~l~~l~~~l~-~~d~v~~~  117 (729)
T 3l7i_A           77 IALEEVETPYFMFLDADDELASYAITFYLEKFN-NTDGLIAP  117 (729)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHhccCCEEEEECCCCCCChhHHHHHHHHhc-CCCEEEEe
Confidence            999999999999999999999999999999998 44444443

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=99.77  E-value=4e-19  Score=163.01  Aligned_cols=156  Identities=6%  Similarity=0.028  Sum_probs=111.4

Q ss_pred             HHHHHHHHhcCCcEEEEEec--------CCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCC-CeEee
Q psy8674           4 KKLEDYIERFNGKVRLIRNT--------EREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR-KIMTV   74 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~~--------~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~-~~~v~   74 (439)
                      +.++++.+ . ++|++++++        +|.|+++|+|.|++.|+|+||+|||+|+.++|+||+.+++.+++++ ..+++
T Consensus        46 ~~~~~~~~-~-~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~  123 (255)
T 1qg8_A           46 NVIRPFLN-D-NRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIY  123 (255)
T ss_dssp             HHHGGGGG-S-TTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHhh-c-CCEEEEecccccccccccccCHHHHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEE
Confidence            34444433 3 489999988        8999999999999999999999999999999999999999999874 45565


Q ss_pred             eeeecc--cCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhC-CC-
Q psy8674          75 PVIDGI--DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG-GY-  150 (439)
Q Consensus        75 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG-gf-  150 (439)
                      +.....  +.......               ........+            .......+.|+++++||++|+++| || 
T Consensus       124 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~------------~~~~~~~~~~~~~~~rr~~~~~~g~~f~  176 (255)
T 1qg8_A          124 SASKTYHLNENRDIVK---------------ETVRPAAQV------------TWNAPCAIDHCSVMHRYSVLEKVKEKFG  176 (255)
T ss_dssp             EEEEEEEEC---CEEE---------------EEEECCCSC------------BSCCTTTSCGGGEEEETHHHHHHHHHHS
T ss_pred             eceEEEEeCCCCcchh---------------hccCchHHH------------HHhhcCCCccceEEEEHHHHHhhccccc
Confidence            554433  22111000               000000000            002233557889999999999999 89 


Q ss_pred             -----CCCCCCccchhhHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674         151 -----DPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLIRPVF  191 (439)
Q Consensus       151 -----de~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~  191 (439)
                           |+.+  ..+||+||++|+...| ++.++|...++|..++..
T Consensus       177 ~~~~~~~~~--~~~eD~~~~~r~~~~g-~~~~~~~~~~~~r~~~~s  219 (255)
T 1qg8_A          177 SYWDESPAF--YRIGDARFFWRVNHFY-PFYPLDEELDLNYITDQS  219 (255)
T ss_dssp             SSSCCCGGG--STTHHHHHHHHHTTTC-CBEEEEEEEEEEEEC---
T ss_pred             ccccCCccc--chHHHHHHHHHHHHhC-CEEEecCcEEEEEEcCCc
Confidence                 6766  3469999999999987 799999999988766543

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*

Probab=99.77  E-value=1.6e-18  Score=158.50  Aligned_cols=150  Identities=11%  Similarity=0.004  Sum_probs=101.8

Q ss_pred             cEEEEEecCC--CChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhc----CCCe-EeeeeeecccCCCcccc
Q psy8674          16 KVRLIRNTER--EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS----DRKI-MTVPVIDGIDYQTWEFR   88 (439)
Q Consensus        16 ~i~~i~~~~n--~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~----~~~~-~v~~~~~~~~~~~~~~~   88 (439)
                      +|-||.+...  .|+++|+|.|++.|+|+||+|||+|++++++||+.+++.+++    ++.. ++++.........    
T Consensus        48 EiIVVDn~s~d~~g~a~a~N~Gi~~A~g~yl~fln~D~~~~~~~l~~l~~~~~~~~~~~~~vg~vg~~~~~~~~~g----  123 (249)
T 2nxv_A           48 EFLAADNREGNQFHGFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVAGSPWRPLN----  123 (249)
T ss_dssp             EEEEEECTTSCSCCTTTHHHHHGGGCCSSEEEEEETTEECSSCCHHHHHHHHHHHHHHCTTEEEEESEEEESSCSC----
T ss_pred             EEEEEECCCCCcccHHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhcccCCCCeeEEeecccccCCCC----
Confidence            4667775432  699999999999999999999999999999999999999987    3544 3433222111000    


Q ss_pred             cccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHH
Q psy8674          89 SVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKI  168 (439)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl  168 (439)
                          ... ......+.....   ..      ......+..+.++.|+||++||++   +|||||.+..+..||+|||+|+
T Consensus       124 ----~~~-~~~~~~~~~~~~---~~------~~~~~~~~~v~~~~g~~~~~rr~~---~~gFDe~~~~~~~~D~Dl~~R~  186 (249)
T 2nxv_A          124 ----HSV-TAQALHISDVFG---ND------RRRGNVPCRVESLDECFLLMRRLK---PVLNSYDMQGFHYYGADLCLQA  186 (249)
T ss_dssp             ----TTS-CCCEEEEEETTE---EE------EEESCSSEEEEEECTTEEEEETTB---CCCCCSSCCSSSSHHHHHHHHH
T ss_pred             ----cee-eecccccCCccc---cc------cccCCCceEcCeeeeEeeEEEHhh---hCCCCCCCCCcceehhHHHHHH
Confidence                000 000000000000   00      000023445667889999999999   8899997754556899999999


Q ss_pred             HHhCCcEEEecccceeccc
Q psy8674         169 WMCGGSIEWVPCSRIVSLI  187 (439)
Q Consensus       169 ~~~G~~i~~~p~~~v~H~~  187 (439)
                      +++|+++++.|. .++|..
T Consensus       187 ~~~G~~~~~~p~-~v~H~~  204 (249)
T 2nxv_A          187 EFLGGRAYAIDF-HLHHYG  204 (249)
T ss_dssp             HHTTCEEEECCC-CCEECC
T ss_pred             HHcCCeEEEecc-EEEECC
Confidence            999999999985 488864

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*

Probab=99.76  E-value=3.3e-19  Score=172.33  Aligned_cols=121  Identities=15%  Similarity=0.141  Sum_probs=97.7

Q ss_pred             CCceEEEEEecCCChhHHHHHHHHHHh---cCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc-CCcEEEEEcCCCCCHH
Q psy8674         268 LPKASVILVFHNEGFSSLMRTVHSIIK---RTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF-NGKVRLIRNTEREGLI  343 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l~sl~~---q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~v~~i~~~~~~g~~  343 (439)
                      .|+||||||+||++ +.|.+||+|+.+   |...++  |||||||||+|+|.+ +++++..+. ...++++..+.|.|++
T Consensus        93 ~p~vSVVIP~yNe~-~~l~~~l~sl~~~l~~~~~~~--EIIVVDDgStD~T~~-i~~~~~~~v~~~~~~~i~~~~n~G~g  168 (387)
T 3f1y_A           93 GLTVSAVLPSRNVA-DTVGGIIDEIHALNERAPLID--QILVVDADSEDGTAG-VAASHGAEVYSENELMSGYGDAHGKG  168 (387)
T ss_dssp             TCCEEEEEEESSCT-TTHHHHHHHHHHHHHHSCCCS--EEEEEECSCSSSHHH-HHHHTTCEEEEGGGTTGGGCSCCSHH
T ss_pred             CCeEEEEEEcCCCH-HHHHHHHHHHHHHHhcCCCCe--EEEEEcCcCCccHHH-HHHHhCchhcccceeEecCCccCCHH
Confidence            57899999999999 999999999976   333455  999999999999987 777653211 0011123456799999


Q ss_pred             HHHHHHHhhcCCCEEEEEcCCCc-cCCCChHHHHHhhhcC-CCEEEEeeee
Q psy8674         344 RTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSD-RKIMTVPVID  392 (439)
Q Consensus       344 ~a~n~g~~~a~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~-~~~~v~~~~~  392 (439)
                      .|+|.|++.|+|+||+|+|+|+. ++|+||..+++.+..+ ...+|++...
T Consensus       169 ~A~n~G~~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~  219 (387)
T 3f1y_A          169 DAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYR  219 (387)
T ss_dssp             HHHHHHTTTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEE
T ss_pred             HHHHHHHHhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeec
Confidence            99999999999999999999999 8999999999999776 4566666543

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=99.74  E-value=2.7e-17  Score=170.47  Aligned_cols=125  Identities=16%  Similarity=0.216  Sum_probs=104.7

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHH
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIR  344 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~  344 (439)
                      ..+|.||||||+||+. +.|.+||+|+..|+++. .+|||||||||+|+|.+ +++++...  .+++++..+. +.|++.
T Consensus        90 ~~~p~vsviIp~~n~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~-~~~~~~~~--~~i~~i~~~~~~~g~~~  164 (625)
T 2z86_A           90 LIIDGLSIVIPTYNRA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEE-IVREFESL--LNIKYVRQKDYGYQLCA  164 (625)
T ss_dssp             CCCCCEEEEEEESSCH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHH-HHHTTTTT--SCEEEEEECCCSCCHHH
T ss_pred             ccCCcEEEEEecCCcH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHH-HHHHhhhc--CCeEEEEeCCCCcchhH
Confidence            4568999999999998 99999999999997653 44999999999999876 77776433  3688887654 347999


Q ss_pred             HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeec
Q psy8674         345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID  395 (439)
Q Consensus       345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~  395 (439)
                      ++|.|++.|+|+||+|+|+|+.++|+||+.++..+..++..++++.....+
T Consensus       165 a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~  215 (625)
T 2z86_A          165 VRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYID  215 (625)
T ss_dssp             HHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEEC
T ss_pred             HHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeecc
Confidence            999999999999999999999999999999999999877766665444433

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*

Probab=99.72  E-value=3.8e-18  Score=175.76  Aligned_cols=126  Identities=12%  Similarity=0.085  Sum_probs=101.7

Q ss_pred             CCCceEEEEEecCCChhHHHHHHHHHHhcCC---cCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHH
Q psy8674         267 DLPKASVILVFHNEGFSSLMRTVHSIIKRTP---AQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLI  343 (439)
Q Consensus       267 ~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~---~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~  343 (439)
                      ..|+||||||+||+. +.|.+||+||.+|++   ..+  |||||||||+|++....+.++.+...++++++.++ |.|.+
T Consensus       178 ~~pkVSVVIptYN~~-~~L~~~L~SL~~qt~~~~~~~--EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~-N~G~a  253 (657)
T 4fix_A          178 GTANIAVGIPTFNRP-ADCVNALRELTADPLVDQVIG--AVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP-NLGGS  253 (657)
T ss_dssp             SCCCEEEECCBSSCH-HHHHHHHHHHTTSHHHHTTEE--EEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC-CCHHH
T ss_pred             CCCeEEEEEEecCCH-HHHHHHHHHHHcCccccCCCC--EEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC-CCCHH
Confidence            458999999999999 999999999999986   444  99999999998531112222333333489999887 99999


Q ss_pred             HHHHHHHhhc----CCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeeeeeecC
Q psy8674         344 RTRSRGAKES----RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGIDY  396 (439)
Q Consensus       344 ~a~n~g~~~a----~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~  396 (439)
                      +|+|.|++.|    .+|||+|||+|+.++|+||+.+++.++.++. ++++|.+-..+.
T Consensus       254 ~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~  311 (657)
T 4fix_A          254 GGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQE  311 (657)
T ss_dssp             HHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCC
Confidence            9999999998    4589999999999999999999999987655 566776655444

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}

Probab=99.70  E-value=7.4e-17  Score=170.65  Aligned_cols=129  Identities=16%  Similarity=0.194  Sum_probs=105.1

Q ss_pred             CCCCCceEEEEEecCCChhHH-HHHHHHHHhcCCcCCcceEEEEeCCCChhhH--------------HHHHHHHHHHcCC
Q psy8674         265 PLDLPKASVILVFHNEGFSSL-MRTVHSIIKRTPAQYLEEIILVDDFSSKADL--------------DQKLEDYIQRFNG  329 (439)
Q Consensus       265 ~~~~p~vsiiip~~n~~~~~l-~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~--------------~~~~~~~~~~~~~  329 (439)
                      +...|+||||||+||++ ..+ .+||+|+.+|+|++..+|||||||||+|+|.              .+.++++.++.  
T Consensus       136 ~~~~P~VSViIPtyNe~-~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~--  212 (802)
T 4hg6_A          136 PEELPTVDILVPSYNEP-ADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCREL--  212 (802)
T ss_dssp             TTTCCCEEEEEECTTCC-HHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ccCCCcEEEEEEECCCC-HHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhc--
Confidence            35678999999999999 655 9999999999999744599999999999983              22455555554  


Q ss_pred             cEEEEEcCCC-CCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcC-CCEEEEeeeeeecC
Q psy8674         330 KVRLIRNTER-EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSD-RKIMTVPVIDGIDY  396 (439)
Q Consensus       330 ~v~~i~~~~~-~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~-~~~~v~~~~~~~~~  396 (439)
                      +++++..+++ .|++.++|.|++.+++|||+++|+|+.++|++++.+++.++++ ..+++++.....+.
T Consensus       213 ~v~~i~~~~~~~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~  281 (802)
T 4hg6_A          213 GVVYSTRERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINP  281 (802)
T ss_dssp             TCEEEECSSCCSHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSC
T ss_pred             CcEEEEecCCCCcchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCC
Confidence            4667766665 7899999999999999999999999999999999999999654 45667765544443

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...

Probab=99.69  E-value=9.9e-17  Score=148.61  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=85.6

Q ss_pred             cEEEEEecCCC--ChhHHHHhhh----hhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecccCCCccccc
Q psy8674          16 KVRLIRNTERE--GLIRTRSRGA----KESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRS   89 (439)
Q Consensus        16 ~i~~i~~~~n~--G~a~arN~G~----~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~   89 (439)
                      .|-||....+.  +.+.++|.|+    +.|+|+||+|+|+|+++.++++..            .++      ... ... 
T Consensus        99 EIiVVdds~d~~f~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~~~~------------~~~------~~p-~~~-  158 (287)
T 2fy7_A           99 GIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAY------------RCF------SQP-RHI-  158 (287)
T ss_dssp             EEEEEEECSSSCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSCC------------SCC------SSC-EEC-
T ss_pred             eEEEEEeCCCCccchhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCcceE------------ecC------CCC-ceE-
Confidence            56777765554  5688899999    999999999999999999996210            000      000 000 


Q ss_pred             ccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHH
Q psy8674          90 VYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIW  169 (439)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~  169 (439)
                           ......+.+                    .  .....+.|+++++||++|+++|||||.|+.||+||.||++|+.
T Consensus       159 -----~~~~~~~~~--------------------~--~~~~~~~G~~~~~rr~~f~~vgGFde~~~g~g~ED~Dl~~Rl~  211 (287)
T 2fy7_A          159 -----SVAMDKFGF--------------------S--LPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLV  211 (287)
T ss_dssp             -----CCEEGGGTT--------------------S--CSSTTCCCSEEEEEHHHHHHTTSCCSCCSSCSCHHHHHHHHHH
T ss_pred             -----EEeeccccc--------------------C--CCcCceeeeEEEEEHHHHHHcCCCCccccccccchHHHHHHHH
Confidence                 000000000                    0  0113557999999999999999999999988899999999999


Q ss_pred             HhCCcEEEe-----cccceeccc
Q psy8674         170 MCGGSIEWV-----PCSRIVSLI  187 (439)
Q Consensus       170 ~~G~~i~~~-----p~~~v~H~~  187 (439)
                      ++|+++...     +...++|..
T Consensus       212 ~~G~~i~~~~~~~~~~~~i~H~~  234 (287)
T 2fy7_A          212 FRGMSISRPNAVVGTTRHIRHSR  234 (287)
T ss_dssp             HTTCCCBCCCTTTCEEEECC---
T ss_pred             HcCCeEEecCcccceeEEEecCC
Confidence            999999843     444455544

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*

Probab=99.65  E-value=1e-17  Score=176.33  Aligned_cols=160  Identities=12%  Similarity=0.106  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +.+.++++.++++++|+++++++|.|+++|+|.|++.|+|+||+|||+|+.+.|+||+.+++.++ +...++++. ....
T Consensus        45 t~~il~~~~~~~~~~i~~i~~~~n~G~~~arN~gi~~A~gdyI~flD~Dd~~~p~~l~~l~~~l~-~~d~v~~~~-~~~~  122 (729)
T 3l7i_A           45 SKKLMDEAIKDYDKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDADDELASYAITFYLEKFN-NTDGLIAPI-HSFT  122 (729)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHhccCCEEEEECCCCCCChhHHHHHHHHhc-CCCEEEEee-EEee
Confidence            45667788777666999999999999999999999999999999999999999999999999998 333333322 2211


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhC-CCCCCCCCccch
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG-GYDPGLLVWGGE  160 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG-gfde~~~~~~~E  160 (439)
                      ........        ........      ....     ....  .......++++++||++|+++| +|||.+..  +|
T Consensus       123 ~~~~~~~~--------~~~~~~~~------~~~~-----~~~~--~~~~~~~~~~~~~rr~~l~~~gl~fde~~~~--~E  179 (729)
T 3l7i_A          123 TQRPQFVD--------LDRVRVEY------FNAK-----ENIN--SFLRKQSACNIIFRTAIVRAHHIRFNENLNT--YV  179 (729)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCcccc--------ccceeeee------ecch-----hhHH--HHhhccchhheeeeHHHHHHcCCCcCCCCCc--cc
Confidence            11100000        00000000      0000     0000  0111346778999999999999 99999842  59


Q ss_pred             hhHHHHHHHHhCCcEEEecccceecc
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSL  186 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~  186 (439)
                      |+||++|+...|+++.++|...++|.
T Consensus       180 D~d~~~rl~~~g~~i~~~~~~~~~~y  205 (729)
T 3l7i_A          180 DWSFVLEYMKYVNKFVRIFNFPFYFR  205 (729)
T ss_dssp             --------------------------
T ss_pred             CHHHHHHHHHhcCCEEEecCcEEEEE
Confidence            99999999999999999954556554

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}

Probab=99.62  E-value=1.1e-15  Score=161.62  Aligned_cols=167  Identities=13%  Similarity=0.132  Sum_probs=113.6

Q ss_pred             HHHHHHHhcCCcEEEEEecCC-CChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC-eEeeeeeecccC
Q psy8674           5 KLEDYIERFNGKVRLIRNTER-EGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVIDGIDY   82 (439)
Q Consensus         5 ~l~~~~~~~~~~i~~i~~~~n-~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~   82 (439)
                      .++++.++++  ++++..++| .|.++|+|.|++.|+||||+|+|+|+.++|++|+.+++.+++++. +++++.....+.
T Consensus       204 ~l~~~~~~~~--v~~i~~~~~~~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~  281 (802)
T 4hg6_A          204 ELQQLCRELG--VVYSTRERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINP  281 (802)
T ss_dssp             HHHHHHHHHT--CEEEECSSCCSHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSC
T ss_pred             HHHHHHHhcC--cEEEEecCCCCcchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCC
Confidence            4566666664  788887776 789999999999999999999999999999999999999976665 455443333222


Q ss_pred             CCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhh
Q psy8674          83 QTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENF  162 (439)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~  162 (439)
                      +......         ..+.. .......+........    .......+.|+++++||++|+++|||++...   +||.
T Consensus       282 ~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~G~~~~~Rr~al~~vGgf~~~~~---~ED~  344 (802)
T 4hg6_A          282 DPIQRNL---------ALGDR-CPPENEMFYGKIHRGL----DRWGGAFFCGSAAVLRRRALDEAGGFAGETI---TEDA  344 (802)
T ss_dssp             CHHHHHH---------TCCTT-SCCTTHHHHHTHHHHH----HHTTCCCCCSSSEEEEHHHHHHHTTCCCSSS---SHHH
T ss_pred             chHhhhh---------hHHhh-hhHHHHHHHHHHHhhH----hhcCCceecccchhhhHHHHHHcCCcCCCCc---chHH
Confidence            2110000         00000 0000000000000000    0112234578999999999999999999774   3999


Q ss_pred             HHHHHHHHhCCcEEEecccceecccccc
Q psy8674         163 ELSFKIWMCGGSIEWVPCSRIVSLIRPV  190 (439)
Q Consensus       163 Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~  190 (439)
                      |+++|+.+.|+++.++|++.++|.....
T Consensus       345 ~l~~rl~~~G~ri~~~~~~~~~~~~p~t  372 (802)
T 4hg6_A          345 ETALEIHSRGWKSLYIDRAMIAGLQPET  372 (802)
T ss_dssp             HHHHHHHTTTCCEEECCCCCEEECCCCS
T ss_pred             HHHHHHHHcCCeEEEecCCEEEecCCCC
Confidence            9999999999999999999999975443

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*

Probab=99.56  E-value=1.6e-14  Score=131.78  Aligned_cols=97  Identities=14%  Similarity=0.078  Sum_probs=77.8

Q ss_pred             CCCCceEEEEEecCCChhHHHHHHHHHHhcCC-cCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHH
Q psy8674         266 LDLPKASVILVFHNEGFSSLMRTVHSIIKRTP-AQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIR  344 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~-~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~  344 (439)
                      +..|.+||| |+||+. +.|.+||+|+.+... +.. +|||||||+|+|.                         .|.+.
T Consensus        13 ~~~~~iSII-~~yN~~-~~l~~~l~sl~~sl~~q~~-~EiIVVDn~s~d~-------------------------~g~a~   64 (249)
T 2nxv_A           13 ESTLMFSVC-SLVRDQ-AKYDRLLESFERFGFTPDK-AEFLAADNREGNQ-------------------------FHGFS   64 (249)
T ss_dssp             CCCCSEEEE-EEESCH-HHHHHHHHHHHHTTCCTTT-EEEEEEECTTSCS-------------------------CCTTT
T ss_pred             CCcceEEEE-EeeCCH-HHHHHHHHHHHHhccCCCc-EEEEEEECCCCCc-------------------------ccHHH
Confidence            345789975 679998 999999998865322 221 4999999999761                         25689


Q ss_pred             HHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhc----CCC-EEEEee
Q psy8674         345 TRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS----DRK-IMTVPV  390 (439)
Q Consensus       345 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~----~~~-~~v~~~  390 (439)
                      |+|.|++.|+|+|++|||+|+.++++||+.+++.+++    ++. +++++.
T Consensus        65 a~N~Gi~~A~g~yl~fln~D~~~~~~~l~~l~~~~~~~~~~~~~vg~vg~~  115 (249)
T 2nxv_A           65 WHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVA  115 (249)
T ss_dssp             HHHHHGGGCCSSEEEEEETTEECSSCCHHHHHHHHHHHHHHCTTEEEEESE
T ss_pred             HHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhcccCCCCeeEEeec
Confidence            9999999999999999999999999999999999987    244 455543

>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*

Probab=99.52  E-value=3.4e-14  Score=130.47  Aligned_cols=100  Identities=12%  Similarity=0.126  Sum_probs=80.9

Q ss_pred             CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhH--HHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674         268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADL--DQKLEDYIQRFNGKVRLIRNTEREGLIRT  345 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~--~~~~~~~~~~~~~~v~~i~~~~~~g~~~a  345 (439)
                      .+++|||||+||++ .   .+|+++++|.+.++  |||+|||||+|.+.  .++++++.+..+.++.+|+ .+|.|.+.|
T Consensus        52 ~~klSIVVPvYNEe-~---~lLesVl~qi~~d~--eIIlVdDGS~D~s~~e~dil~~~~~~~~~ri~viH-Qkn~gls~A  124 (391)
T 2wvl_A           52 LEQTAIVVPTRNER-L---KLLEGVLSGIPHEA--LILVASNSSPDRFQMERDLLEEFAHLTERPALIFH-QKDPALAEA  124 (391)
T ss_dssp             HTTEEEEEEESSCC-H---HHHHHHHHTSCTTS--EEEEEECCCHHHHHHHHHHHHHHHHHTTCCEEEEE-TTCHHHHHH
T ss_pred             HhceEEEEeccCcH-H---HHHHHHHhcCCCCc--eEEEEECCCCCChHhHHHHHHHHHhhcccceEEEe-ccChHHHHH
Confidence            45799999999999 5   46999999999887  99999999999983  2388899875455899995 677788888


Q ss_pred             HH-H----------------------HHhhc---CCCEEEEEcCCCccCCCChHH
Q psy8674         346 RS-R----------------------GAKES---RGEVIVFLDAHCEVGLNWLPP  374 (439)
Q Consensus       346 ~n-~----------------------g~~~a---~~d~i~~ld~D~~~~~~~l~~  374 (439)
                      +| .                      |+..|   .++||.|+|+|+.++.+..+.
T Consensus       125 r~~~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~~v~Ey  179 (391)
T 2wvl_A          125 LRAGGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPGAVWEY  179 (391)
T ss_dssp             HHHTTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHHHHHHH
T ss_pred             HHhcCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCccCHHHH
Confidence            76 2                      55665   799999999999996554443

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A

Probab=99.47  E-value=1.5e-14  Score=137.56  Aligned_cols=147  Identities=17%  Similarity=0.120  Sum_probs=92.4

Q ss_pred             ecCCCChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHHHHHhcCC-CeEeeeeeecccC-CCcccccccCCCCccc
Q psy8674          22 NTEREGLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR-KIMTVPVIDGIDY-QTWEFRSVYEPDHHYR   98 (439)
Q Consensus        22 ~~~n~G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~   98 (439)
                      +++|.|+++|+|.|++.|+|+||+|||+|+. +.|+||+.+++.+.+++ .+++.+....... +......     ....
T Consensus       113 ~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~-----~~~~  187 (329)
T 3ckj_A          113 VPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYRRPLNVGDAGGGA-----GATG  187 (329)
T ss_dssp             SCCCCSHHHHHHHHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEEECC-------------------
T ss_pred             CCCCCCHHHHHHHHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEecccccCCcccccc-----cccC
Confidence            7899999999999999999999999999999 89999999999976654 4555554332210 0000000     0000


Q ss_pred             cccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHHH-hCCc-EE
Q psy8674          99 GIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWM-CGGS-IE  176 (439)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~~-~G~~-i~  176 (439)
                      ++......      ........  ...........|+++++||++|+++| |+++|    +||+||++|+.+ .|++ +.
T Consensus       188 ~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~g~~~~rr~~l~~i~-f~~~~----~~D~~l~~r~~~~~g~~~i~  254 (329)
T 3ckj_A          188 GGRVTELV------ARPLLAAL--RPELGCILQPLGGEYAATRELLTSVP-FAPGY----GVEIGLLVDTFDRLGLDAIA  254 (329)
T ss_dssp             -CHHHHHT------HHHHHHHH--CGGGGGCSCTTCSCEEEEHHHHTTSC-BCCGG----GHHHHHHHHHHHHHCGGGEE
T ss_pred             CCceehhh------HHHHHHHh--hhhhccccCCCccceeeeHHHHHhCC-CCCCC----cccHHHHHHHHHhcCCccEe
Confidence            00000000      00000000  00001122345778999999999997 88875    399999999987 6775 77


Q ss_pred             Eecccceecc
Q psy8674         177 WVPCSRIVSL  186 (439)
Q Consensus       177 ~~p~~~v~H~  186 (439)
                      ..|.....|.
T Consensus       255 ~v~~~~r~h~  264 (329)
T 3ckj_A          255 QVNLGVREHR  264 (329)
T ss_dssp             EEEEEECEEC
T ss_pred             eecceEEecC
Confidence            7776655554

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*

Probab=99.47  E-value=1.5e-13  Score=132.49  Aligned_cols=113  Identities=13%  Similarity=0.129  Sum_probs=83.4

Q ss_pred             EEEEEecCCChhHHHHHHHHHHh-cCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc----CCcEEEEEcC--C--CCCH
Q psy8674         272 SVILVFHNEGFSSLMRTVHSIIK-RTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF----NGKVRLIRNT--E--REGL  342 (439)
Q Consensus       272 siiip~~n~~~~~l~~~l~sl~~-q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~----~~~v~~i~~~--~--~~g~  342 (439)
                      ||||+.+|++  .|..+++++.. +..+++  |||||||||+|+|.+ +++++..+.    ..++.++...  .  |.|+
T Consensus         2 slVIiP~~eE--~I~~vl~~l~~~~~~~~~--EIIVVDDGStD~T~e-ia~~la~~~~~~~g~~vi~~~~~r~~~~n~Gk   76 (397)
T 2bo4_A            2 SLVVFPFKHE--HPEVLLHNVRVAAAHPRV--HEVLCIGYERDQTYE-AVERAAPEISRATGTPVSVRLQERLGTLRPGK   76 (397)
T ss_dssp             CEEEEECCSS--CHHHHHHHHHHHHHSTTC--CEEEEEESSCCHHHH-HHHHHHHHHHHHHSCCEEEEECCCCSSSSSSH
T ss_pred             cEEEEeCCcc--CHHHHHHHHHHhccCCCe--EEEEEECcCCccHHH-HHHHhhhhcccccCCeEEEEecccCCCCCCCH
Confidence            4455555544  47778887752 334555  999999999999988 888554432    2233333222  3  7999


Q ss_pred             HHHHHHHH----hhcCCCEEEEEcCCCc-cCCCChHHHHHhhhcCCCEEEEee
Q psy8674         343 IRTRSRGA----KESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       343 ~~a~n~g~----~~a~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                      +.|++.|+    +.++||+++++|+|.. ++|+++..|++.+..+ .++|.+.
T Consensus        77 G~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~~g-~D~V~g~  128 (397)
T 2bo4_A           77 GDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFG-YGLVRHY  128 (397)
T ss_dssp             HHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTT-CSEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHHcC-CCEEEEE
Confidence            99999999    8899999999999996 8999999999999765 4555553

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...

Probab=99.35  E-value=2e-12  Score=119.63  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=66.9

Q ss_pred             CCceEEEEEecCCChhHHHHHHHHHH---hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHH
Q psy8674         268 LPKASVILVFHNEGFSSLMRTVHSII---KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIR  344 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l~sl~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~  344 (439)
                      .|+||||||+||++ +.|.+||+|+.   +|++.++  |||||||+++ .                        .++.+.
T Consensus        64 ~~~VSIIIP~yN~~-~~L~~~L~sl~~~l~q~~~~~--EIiVVdds~d-~------------------------~f~~a~  115 (287)
T 2fy7_A           64 PHKVAIIIPFRNRQ-EHLKYWLYYLHPVLQRQQLDY--GIYVINQAGD-T------------------------IFNRAK  115 (287)
T ss_dssp             SCEEEEEEEESSCH-HHHHHHHHHHHHHHHHTTCEE--EEEEEEECSS-S------------------------CCCHHH
T ss_pred             CCcEEEEEeeCCCH-HHHHHHHHHHHHHHHHhcCCc--eEEEEEeCCC-C------------------------ccchhh
Confidence            57899999999999 99999999999   6887766  9999999432 1                        125788


Q ss_pred             HHHHHH----hhcCCCEEEEEcCCCccCCCCh
Q psy8674         345 TRSRGA----KESRGEVIVFLDAHCEVGLNWL  372 (439)
Q Consensus       345 a~n~g~----~~a~~d~i~~ld~D~~~~~~~l  372 (439)
                      ++|.|+    +.|+||||+|+|+|+.+.+++.
T Consensus       116 a~N~G~~~al~~A~gd~i~flD~D~i~~~d~~  147 (287)
T 2fy7_A          116 LLNVGFQEALKDYDYTCFVFSDVDLIPMNDHN  147 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEECTTEEESBTTS
T ss_pred             hhhhHHHHHHHhCCCCEEEEECCCcccCCCcc
Confidence            999999    8999999999999999998873

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*

Probab=99.33  E-value=2.9e-13  Score=130.67  Aligned_cols=152  Identities=11%  Similarity=0.064  Sum_probs=96.7

Q ss_pred             EEEecCCCChhHHHHhhhhhccCcEEEEecCCcc-cCCCchHHHHHHHhcCC-CeEeeeeeecccCCCcccccccCCCCc
Q psy8674          19 LIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR-KIMTVPVIDGIDYQTWEFRSVYEPDHH   96 (439)
Q Consensus        19 ~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~   96 (439)
                      ++.+++|.|.++|+|.|++.|+|+||+|||+|+. ++|+||..+++.+.+++ .+++.+................++   
T Consensus       158 ~i~~~~n~G~g~A~n~G~~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~~~~~~~~~~~~~~~g---  234 (387)
T 3f1y_A          158 MSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRRPFRKGESIEEDGGG---  234 (387)
T ss_dssp             TGGGCSCCSHHHHHHHHTTTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEECC-------CCBCCS---
T ss_pred             EecCCccCCHHHHHHHHHHhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeeccccccccccccccCC---
Confidence            3445689999999999999999999999999999 89999999999998764 556655432211100000000000   


Q ss_pred             cccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHHH-HhCCc-
Q psy8674          97 YRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIW-MCGGS-  174 (439)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl~-~~G~~-  174 (439)
                        ....+.        .............  ......++++++||++++++ +|+++|    +.|+++.+++. +.|++ 
T Consensus       235 --~v~~~~--------~~~l~~~~~~~l~--~~~d~~sG~~a~rR~~l~~i-~f~~gy----g~e~ell~~~~~~~G~~~  297 (387)
T 3f1y_A          235 --RVTELT--------AKPLFNLFYPELA--GFVQPLAGEFVADRELFCSI-PFLTGY----AVETGIMIDVLKKVGLGA  297 (387)
T ss_dssp             --HHHHHT--------HHHHHHHHCGGGT--TCSCTTCSCEEEEHHHHTTS-CEECST----THHHHHHHHHHHHHCGGG
T ss_pred             --chhhhh--------HHHHHHHHhHhhc--cccccccccEEEEHHHHHhC-CCCCCc----chHHHHHHHHHHhcCCCe
Confidence              000000        0000000000000  12233577899999999999 687765    38999999985 56997 


Q ss_pred             EEEecccceecccccc
Q psy8674         175 IEWVPCSRIVSLIRPV  190 (439)
Q Consensus       175 i~~~p~~~v~H~~~~~  190 (439)
                      |..+|-....|..+..
T Consensus       298 I~eVpi~~~~h~~~~~  313 (387)
T 3f1y_A          298 MAQVDLGERQNRHQHL  313 (387)
T ss_dssp             EEEEEEEECCCCCCCH
T ss_pred             EEEEecceeecCCCCH
Confidence            9999988777755443

>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*

Probab=99.33  E-value=6.7e-12  Score=118.96  Aligned_cols=104  Identities=21%  Similarity=0.266  Sum_probs=78.9

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhh------HHHHHHHHHHHcCCcEEEEEcCC----
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKAD------LDQKLEDYIQRFNGKVRLIRNTE----  338 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t------~~~~~~~~~~~~~~~v~~i~~~~----  338 (439)
                      .++|||||+|||+ ..+   |..++.+....+  |||||||||+|+|      .+ +++.+....+..+.+++...    
T Consensus        51 ~~iSVVIP~yNEE-~~l---I~~vL~~i~~~~--eIIvVDDgSrD~tD~~~~~~~-~l~~~~~~~~~~~~Vl~~~~p~v~  123 (394)
T 2zu9_A           51 GKMAVIVPMKNEK-LHL---VDGVLKAIPHKC--PIIIVSNSKREGPNRYKLEVD-LIRHFYNLTHSKIIMIHQKDPGLA  123 (394)
T ss_dssp             TTEEEEEEESSCC-HHH---HHHHHHHSCTTS--CEEEEECCCCSSSCHHHHHHH-HHHHHHHHHCCCEEEEETTCHHHH
T ss_pred             CCEEEEEecCccc-HHH---HHHHHHcCCCCc--EEEEEECcCcccccchhhHHH-HHHHHhhccccceEEEecCCcchh
Confidence            3699999999999 554   556666554444  9999999997776      45 67777665455677776543    


Q ss_pred             ------------------CCCHHHHHHHHHhhc---CCCEEEEEcCCCccCCCChHHHHHhhh
Q psy8674         339 ------------------REGLIRTRSRGAKES---RGEVIVFLDAHCEVGLNWLPPLLAPIY  380 (439)
Q Consensus       339 ------------------~~g~~~a~n~g~~~a---~~d~i~~ld~D~~~~~~~l~~l~~~~~  380 (439)
                                        +.|++.|+-.|+..|   ++++|+|+|+|. ..|..+..+++.+.
T Consensus       124 ~~~~~~g~~~il~~~~~~r~GKG~Am~aGl~~A~~~~gd~Vv~~DaDl-~iP~~v~~~~kgy~  185 (394)
T 2zu9_A          124 KAFKEVGYTDILDENGMIRSGKGEGMLVGLLLAKAIGAEYVGFVDADN-YIPGAVNEYVKDYA  185 (394)
T ss_dssp             HHHHHHTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCB-SCHHHHHHHHHHHH
T ss_pred             HHhhhccccccccccccccCChHHHHHHHHHHHhhCCCCEEEEEeCCC-CCHHHHHHHHHHhh
Confidence                              249999999999999   999999999999 55666666666544

>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*

Probab=99.06  E-value=6.9e-10  Score=104.48  Aligned_cols=113  Identities=14%  Similarity=0.213  Sum_probs=84.1

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEE---------cCCC
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIR---------NTER  339 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~---------~~~~  339 (439)
                      +.++|||++||+. + |.+||+||++|.+.....+|||.|||+.+++.+ +++.+..    .+..+.         .++|
T Consensus         2 ~~~pViI~~yNRp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~-vi~~~~~----~I~~~~~~d~~~~~~~~~N   74 (343)
T 1fo8_A            2 AVIPILVIACDRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQ-VIASYGS----AVTHIRQPDLSNIAVQPDH   74 (343)
T ss_dssp             CCCCEEEEESSCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHH-HHHTTGG----GSEEEECSCCCCCCCCTTC
T ss_pred             CcccEEEEECCcH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHH-HHHHcCC----ceEEEEcCCccccccchhh
Confidence            4689999999999 8 999999999998543334999999999887755 6666532    244432         3445


Q ss_pred             CCHH----------HHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHH---hhhcCCCEEEE
Q psy8674         340 EGLI----------RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLA---PIYSDRKIMTV  388 (439)
Q Consensus       340 ~g~~----------~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~---~~~~~~~~~v~  388 (439)
                      .|..          .++|.++..++++++++||+|+.+.|++++-+.+   .++.++.+..+
T Consensus        75 ~g~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~I  136 (343)
T 1fo8_A           75 RKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCV  136 (343)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEE
T ss_pred             cCcccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEE
Confidence            5543          5777777777899999999999999999965544   44566665443

>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}

Probab=98.94  E-value=1.1e-08  Score=91.33  Aligned_cols=128  Identities=14%  Similarity=0.153  Sum_probs=86.2

Q ss_pred             HHHHHHhcC--CcEEEEEecC--CCChhHHHHhhhhhcc--CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeec
Q psy8674           6 LEDYIERFN--GKVRLIRNTE--REGLIRTRSRGAKESR--GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDG   79 (439)
Q Consensus         6 l~~~~~~~~--~~i~~i~~~~--n~G~a~arN~G~~~A~--g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~   79 (439)
                      +..|+++..  -.|-||.-..  .+..|...|.|+..|.  -|+++|-|.|.++..+...            -.++..  
T Consensus        73 lhp~L~rQ~l~y~I~VieQ~~~~~FNRa~LlNvGf~ea~~~~d~~ifHDVDLlP~dd~n~------------Y~c~~~--  138 (287)
T 3lw6_A           73 MTAFLKRQGVAHHIFVLNQVDRFRFNRASLINVGFQFASDVYDYIAMHDVDLLPLNDNLL------------YEYPSS--  138 (287)
T ss_dssp             HHHHHHHTTCEEEEEEEEECSSSCCCHHHHHHHHHHHSCTTCCEEEEECTTEEECCTTSC------------CCCCCT--
T ss_pred             HHHHHHHcCCceEEEEEecCCCCccchhheecccHHHHhccCCEEEEecccccccCCCcc------------ccCCCC--
Confidence            456666543  2566666332  3567899999999886  5999999999988654210            011100  


Q ss_pred             ccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccc
Q psy8674          80 IDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGG  159 (439)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~  159 (439)
                        .... +..        ...+...+                      ....+.|++++++|+.|.++||||+.|..||+
T Consensus       139 --~~P~-Hls--------~~~~~~~~----------------------~Y~~~~GGv~a~~re~f~kVNGFsn~f~GWGg  185 (287)
T 3lw6_A          139 --LGPL-HIA--------GPKLHPKY----------------------HYDNFVGGILLVRREHFKQMNGMSNQYWGWGL  185 (287)
T ss_dssp             --TCCE-ESS--------CTTTCSSC----------------------CCTTCCCSEEEEEHHHHHHTTSCCSCCCSSSS
T ss_pred             --CCce-EEe--------eccccCCC----------------------CcCCccccEEeccHHHHHHcCCCCCcCcCCCc
Confidence              0000 000        00111111                      12245789999999999999999999999999


Q ss_pred             hhhHHHHHHHHhCCcEEEecc
Q psy8674         160 ENFELSFKIWMCGGSIEWVPC  180 (439)
Q Consensus       160 ED~Dl~~Rl~~~G~~i~~~p~  180 (439)
                      ||.||..|+..+|+++...+.
T Consensus       186 EDdD~~~Rl~~~G~~i~Rp~~  206 (287)
T 3lw6_A          186 EDDEFFVRIRDAGLQVTRPQN  206 (287)
T ss_dssp             HHHHHHHHHHHTTCCCBCCSS
T ss_pred             cchHHHHHHHHcCCcEEcCCC
Confidence            999999999999999877654

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*

Probab=98.62  E-value=3.8e-07  Score=87.81  Aligned_cols=132  Identities=17%  Similarity=0.104  Sum_probs=81.9

Q ss_pred             CCChhHHHHhhh----hhccCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCCCCcccc
Q psy8674          25 REGLIRTRSRGA----KESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRG   99 (439)
Q Consensus        25 n~G~a~arN~G~----~~A~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (439)
                      |.|.++|.+.|+    +.|+||+|+|+|+|.. .+|+++..|++.+.++ .++|.+.......+               +
T Consensus        73 n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~~g-~D~V~g~~~r~~~~---------------~  136 (397)
T 2bo4_A           73 RPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFG-YGLVRHYFPRASTD---------------A  136 (397)
T ss_dssp             SSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTT-CSEEEEECCCCTTS---------------C
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHHcC-CCEEEEEeccccCC---------------c
Confidence            899999999999    8999999999999997 8999999999998754 55554431110000               0


Q ss_pred             ccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCC--CCCCCccchhhHHHHHHHHhCCcEEE
Q psy8674         100 IFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYD--PGLLVWGGENFELSFKIWMCGGSIEW  177 (439)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfd--e~~~~~~~ED~Dl~~Rl~~~G~~i~~  177 (439)
                      .+.+.+       ........-............++.++++|++++++....  +....|| .|+++..++.+.|++|..
T Consensus       137 ~~~~~~-------~~~ll~~~~~~~~~~~i~dp~sG~~a~~R~vl~~l~~~~~~~~~~~fg-~eiel~~~a~~~G~rI~E  208 (397)
T 2bo4_A          137 MITWMI-------TRTGFALLWPHTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWG-IDTLYTFVTVQQGVSIYE  208 (397)
T ss_dssp             HHHHHT-------HHHHHHHHCTTSSGGGCSCTTCCCEEEEHHHHHHHHHCHHHHTCCSTT-HHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHH-------HHHHHHHHHHHhhccccccCCcccEEEeHHHHHHHhhhcccCcCCCcc-hHHHHHHHHHHcCCEEEE
Confidence            000000       000000000000001111224566799999999984311  0111233 799999999999999998


Q ss_pred             ecc
Q psy8674         178 VPC  180 (439)
Q Consensus       178 ~p~  180 (439)
                      +|-
T Consensus       209 Vpi  211 (397)
T 2bo4_A          209 CYI  211 (397)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            874

>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}

Probab=98.23  E-value=5.2e-06  Score=69.75  Aligned_cols=145  Identities=11%  Similarity=0.097  Sum_probs=85.5

Q ss_pred             HHHHHHhcCCcEEEEEecCCCChhHHHHhhhhh----ccCcEEEEecCC---cccCCCchHHHHHHHhcCCCeEeeeeee
Q psy8674           6 LEDYIERFNGKVRLIRNTEREGLIRTRSRGAKE----SRGEVIVFLDAH---CEVGLNWLPPLLAPIYSDRKIMTVPVID   78 (439)
Q Consensus         6 l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~----A~g~~i~flD~D---~~~~~~~l~~l~~~~~~~~~~~v~~~~~   78 (439)
                      |...+.+..-.+++...  ..=++.|||..+..    .+.++++|+|+|   .-.+|+.+.+++   + .+.++|++...
T Consensus        17 l~~~l~~~gi~~~l~~~--~SlI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl---~-~g~DVV~GsYp   90 (203)
T 2c0n_A           17 LIDFLVKNDIEYVILSR--RNHVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKF---N-EGYDVVCGYYY   90 (203)
T ss_dssp             HHHHHHHTTCCEEEECC--CSCHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHH---H-HTCSEEEEECB
T ss_pred             HHHHHHhCCCeEEEEcc--ccchHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHH---h-CCCCEEEEEee
Confidence            34445554445777765  44688999999876    356999999999   888999888887   3 24445543321


Q ss_pred             cccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhC--CC----CC
Q psy8674          79 GIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG--GY----DP  152 (439)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG--gf----de  152 (439)
                      .-....  ...         +.-.+.                 ......++....+++++++|++|+++-  .|    +|
T Consensus        91 ~K~~~~--~s~---------~a~~y~-----------------~~i~~~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~  142 (203)
T 2c0n_A           91 LKTLRG--YSV---------YRKDWE-----------------KEIFDGEVNGCGLGFTFIKREFLEKIKRPAFLAFKPI  142 (203)
T ss_dssp             CTTSSS--BSE---------ESSSBC-----------------SSCCCEECSEECSSEEEEEHHHHTTSCSSCCCC----
T ss_pred             ccCCCc--cch---------HHHHHH-----------------HhccCceeeeccccEEEEhHHHHHHHhhhhhhcCChh
Confidence            110000  000         000010                 011122455667789999999999983  33    11


Q ss_pred             CCCCccchhhHHHHHHHHhCCcEEEecccceeccc
Q psy8674         153 GLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLI  187 (439)
Q Consensus       153 ~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~  187 (439)
                      ...-+-+||+.||.-+..+|+.+   |..+.+|.-
T Consensus       143 e~~~~~gEdv~F~~~~k~~~~~~---~~~~~~~~~  174 (203)
T 2c0n_A          143 ESPHWIGEDVYFFSTHKPRTYAL---SSLKAYHFI  174 (203)
T ss_dssp             -----CCHHHHHHHHHCCCEEEE---EEEEEEEES
T ss_pred             hhccccCCceEEEeccccccccc---cccccceee
Confidence            12123359999999998888875   344444443

>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*

Probab=97.49  E-value=0.00074  Score=63.41  Aligned_cols=147  Identities=13%  Similarity=0.089  Sum_probs=80.5

Q ss_pred             HHHHHHHhcCCcEEEEE---------ecCCCChh----------HHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHH
Q psy8674           5 KLEDYIERFNGKVRLIR---------NTEREGLI----------RTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPI   65 (439)
Q Consensus         5 ~l~~~~~~~~~~i~~i~---------~~~n~G~a----------~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~   65 (439)
                      .+.+.++.+..+|+.+.         .++|.|+.          .|.|..+..+++++++||+.|+++.|+|++-+.+.+
T Consensus        45 ~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l  124 (343)
T 1fo8_A           45 ETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATY  124 (343)
T ss_dssp             HHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHH
T ss_pred             HHHHHHHHcCCceEEEEcCCccccccchhhcCcccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHH
Confidence            34555555433455543         35566753          577777777799999999999999999996655555


Q ss_pred             ---hcCCCeEeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHH
Q psy8674          66 ---YSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRA  142 (439)
Q Consensus        66 ---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~  142 (439)
                         +.++.......   ..........            .                 .........+.++.|-.++..|+
T Consensus       125 ~~y~~D~~I~~ISa---~n~~g~~~~~------------~-----------------~~~~~~lyrs~~f~~wGWa~wr~  172 (343)
T 1fo8_A          125 PLLKADPSLWCVSA---WNDNGKEQMV------------D-----------------SSKPELLYRTDFFPGLGWLLLAE  172 (343)
T ss_dssp             HHHHHCTTEEEEES---CCTTCBGGGS------------C-----------------TTCTTCEEEESSCCCSSEEEEHH
T ss_pred             HHhhcCCcEEEEec---ccCccccccc------------c-----------------ccCcceEEeecCCCchhhhhcHH
Confidence               55555433211   1111000000            0                 00001112333445666899999


Q ss_pred             HHHHhCCCCCCCCCccchhhHHHHHH--HHhCCcEEEeccc-ceecccccc
Q psy8674         143 FFLELGGYDPGLLVWGGENFELSFKI--WMCGGSIEWVPCS-RIVSLIRPV  190 (439)
Q Consensus       143 ~f~~iGgfde~~~~~~~ED~Dl~~Rl--~~~G~~i~~~p~~-~v~H~~~~~  190 (439)
                      .|++   |++.+.   ....|..+|.  ...|. ....|+. ++.|+....
T Consensus       173 ~W~e---~~~~wp---~~~Wd~w~r~~~~~~~r-~ci~P~vsrv~n~G~~G  216 (343)
T 1fo8_A          173 LWAE---LEPKWP---KAFWDDWMRRPEQRKGR-ACVRPEISRTMTFGRKG  216 (343)
T ss_dssp             HHHH---HGGGCC---SSCHHHHHTSHHHHTTC-EEEEESSBSEEECC---
T ss_pred             HHHH---Hhhhcc---hhHHHHHHHHHHHhCCC-EEEEeccceeEeccccC
Confidence            9987   455542   2356666653  33444 4455555 478875443

>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*

Probab=97.25  E-value=0.00029  Score=65.18  Aligned_cols=58  Identities=10%  Similarity=0.033  Sum_probs=45.6

Q ss_pred             hHHHHHHHHhcCCcEEEEEecCCCChhHHHH-h----------------------hhhhc---cCcEEEEecCCcccCCC
Q psy8674           3 DKKLEDYIERFNGKVRLIRNTEREGLIRTRS-R----------------------GAKES---RGEVIVFLDAHCEVGLN   56 (439)
Q Consensus         3 ~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN-~----------------------G~~~A---~g~~i~flD~D~~~~~~   56 (439)
                      .+.+++|.+.-..+|.+|+ ++|.|+|.||| .                      |+..|   .|+||.|+|+|..++.+
T Consensus        97 ~dil~~~~~~~~~ri~viH-Qkn~gls~Ar~~~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~~  175 (391)
T 2wvl_A           97 RDLLEEFAHLTERPALIFH-QKDPALAEALRAGGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPGA  175 (391)
T ss_dssp             HHHHHHHHHHTTCCEEEEE-TTCHHHHHHHHHTTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHHH
T ss_pred             HHHHHHHHhhcccceEEEe-ccChHHHHHHHhcCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCccC
Confidence            3577888874224899996 99999999997 4                      55666   69999999999999766


Q ss_pred             chHHH
Q psy8674          57 WLPPL   61 (439)
Q Consensus        57 ~l~~l   61 (439)
                      ..+.+
T Consensus       176 v~Eyv  180 (391)
T 2wvl_A          176 VWEYV  180 (391)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*

Probab=95.60  E-value=0.019  Score=52.03  Aligned_cols=113  Identities=12%  Similarity=0.071  Sum_probs=79.1

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHH
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSR  348 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~  348 (439)
                      ..+||||-+|++. +.|.+.|+.+.....   ..||+||=++......+.....+ ...+..++++....|. . ..+-.
T Consensus        28 ~~FTvvi~ty~R~-~~L~~lv~~~~~~~~---v~~IvVvWn~~~~~pp~~~~~~~-~~~~vpv~v~~~~~ns-L-nnRF~  100 (293)
T 1omz_A           28 DSFTLIMQTYNRT-DLLLRLLNHYQAVPS---LHKVIVVWNNVGEKGPEELWNSL-GPHPIPVIFKPQTANK-M-RNRLQ  100 (293)
T ss_dssp             TCEEEEEEESSCH-HHHHHHHHHHTTSTT---EEEEEEEECCTTCCCTHHHHHHT-CCCSSCEEEEECSSCC-G-GGGGS
T ss_pred             CceEEEEEeeccc-HHHHHHHHHHhcCCC---CCeEEEEeCCCCCCCChhhcccc-CCCCccEEEEeCCCCc-h-hhccC
Confidence            4799999999998 999999887754332   44999998776433222122221 1112358888776663 1 22222


Q ss_pred             HHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674         349 GAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV  388 (439)
Q Consensus       349 g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~  388 (439)
                      -....+++.|+.+|+|..++.+.|+......++.+..+|+
T Consensus       101 p~~~i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVG  140 (293)
T 1omz_A          101 VFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIG  140 (293)
T ss_dssp             CCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEE
T ss_pred             CCccCCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceec
Confidence            3345679999999999999999999999999998887776

>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}

Probab=95.44  E-value=0.15  Score=44.74  Aligned_cols=102  Identities=20%  Similarity=0.245  Sum_probs=64.4

Q ss_pred             CCceEEEEEecCCCh--hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC--CC---
Q psy8674         268 LPKASVILVFHNEGF--SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE--RE---  340 (439)
Q Consensus       268 ~p~vsiiip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~---  340 (439)
                      +|.|-||.|||.+..  ..|.+.-++|.. . +++  -.|||+|+..-.  + .+.++.++.+-..+.+..+.  ++   
T Consensus         2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~-V-p~l--~WIVVEd~~~~~--~-~v~~lL~~sgl~y~HL~~~~~~~~~~~   74 (246)
T 2d0j_A            2 LPTIYAITPTYSRPVQKAELTRLANTFRQ-V-AQL--HWILVEDAAARS--E-LVSRFLARAGLPSTHLHVPTPRRYKRP   74 (246)
T ss_dssp             CCCEEEEEEECCSTTHHHHHHHHHHHHTT-S-TTE--EEEEEESSSSCC--H-HHHHHHHHSCSCEEEEECCCCCC----
T ss_pred             CCEEEEEeCCCCccchhHHHHHHHHHHhc-C-Cce--EEEEEcCCCCCC--H-HHHHHHHHcCCceEEEecCCccccCCC
Confidence            578999999999861  344555555543 2 345  889999987532  1 34445555443455554332  11   


Q ss_pred             ---CHHHHHHHHHhhcC---------CCEEEEEcCCCccCCCChHHHH
Q psy8674         341 ---GLIRTRSRGAKESR---------GEVIVFLDAHCEVGLNWLPPLL  376 (439)
Q Consensus       341 ---g~~~a~n~g~~~a~---------~d~i~~ld~D~~~~~~~l~~l~  376 (439)
                         --...+|.|++..+         .-++.|.|+|..++-..+++|.
T Consensus        75 ~~prg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~emR  122 (246)
T 2d0j_A           75 GLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMR  122 (246)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHHT
T ss_pred             CCcchHHHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHHh
Confidence               12478999986432         3688999999998877777643

>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*

Probab=94.90  E-value=0.14  Score=45.59  Aligned_cols=102  Identities=11%  Similarity=0.066  Sum_probs=59.7

Q ss_pred             CCCCceEEEEEecCCCh--hHHHHHHHHHHhcCCcCCcceEEEEeCCCC-hhhHHHHHHHHHHHcCCcEEEEEcCCCCC-
Q psy8674         266 LDLPKASVILVFHNEGF--SSLMRTVHSIIKRTPAQYLEEIILVDDFSS-KADLDQKLEDYIQRFNGKVRLIRNTEREG-  341 (439)
Q Consensus       266 ~~~p~vsiiip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~v~~i~~~~~~g-  341 (439)
                      ...|.|-||.|||.+..  ..|.+.-+.|.. . +++  -.|||+|+.. ..    .+.++.++.+-..+.+..+.+.+ 
T Consensus        18 ~~~p~IivVTPTy~R~~Q~a~LtRLa~TL~~-V-p~L--~WIVVEd~~~~t~----~va~lL~rsGl~y~HL~~~~p~~~   89 (281)
T 3cu0_A           18 GSHMTIYVVTPTYARLVQKAELVRLSQTLSL-V-PRL--HWLLVEDAEGPTP----LVSGLLAASGLLFTHLVVLTPKAQ   89 (281)
T ss_dssp             ---CEEEEEEEECCSTTHHHHHHHHHHHHTT-S-SSE--EEEEEESSSSCCH----HHHHHHHHHCSEEEEEECCCC---
T ss_pred             CCCCeEEEEeCCCCCcchhHHHHHHHHHHhc-C-Cce--EEEEEcCCCCCCH----HHHHHHHHcCCceEEeccCCCccc
Confidence            46789999999998861  334444444443 2 355  8899999753 22    22333333333344444332211 


Q ss_pred             -------------HHHHHHHHHhhcC-----------------CCEEEEEcCCCccCCCChHHH
Q psy8674         342 -------------LIRTRSRGAKESR-----------------GEVIVFLDAHCEVGLNWLPPL  375 (439)
Q Consensus       342 -------------~~~a~n~g~~~a~-----------------~d~i~~ld~D~~~~~~~l~~l  375 (439)
                                   -...+|.|++..+                 .-+|.|.|+|..++-..+++|
T Consensus        90 ~~~~~dp~w~~~rg~~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFdem  153 (281)
T 3cu0_A           90 RLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEM  153 (281)
T ss_dssp             --------CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred             cccccccccccchhHHHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHHh
Confidence                         1467999996544                 247889999988877666653

>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*

Probab=94.45  E-value=0.12  Score=45.56  Aligned_cols=101  Identities=13%  Similarity=0.144  Sum_probs=62.0

Q ss_pred             CCceEEEEEecCCCh--hHHHHHHHHHHhcCCcCCcceEEEEeCCCC-hhhHHHHHHHHHHHcCCcEEEEEcCCC-----
Q psy8674         268 LPKASVILVFHNEGF--SSLMRTVHSIIKRTPAQYLEEIILVDDFSS-KADLDQKLEDYIQRFNGKVRLIRNTER-----  339 (439)
Q Consensus       268 ~p~vsiiip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~v~~i~~~~~-----  339 (439)
                      +|.|-||.|||.+..  ..|.+..++|..  .+++  -.|||+|+.. ..    .+.++.++.+-..+.+..+..     
T Consensus         2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~--Vp~L--~WIVVEd~~~~t~----~va~lL~~sgl~y~HL~~~~p~~~~~   73 (253)
T 1v84_A            2 LPTIHVVTPTYSRPVQKAELTRMANTLLH--VPNL--HWLVVEDAPRRTP----LTARLLRDTGLNYTHLHVETPRNYKL   73 (253)
T ss_dssp             CCEEEEEEEECCSTTHHHHHHHHHHHHTT--SSSE--EEEEEESSSSCCH----HHHHHHHHHCCEEEEEECCCCHHHHC
T ss_pred             CCEEEEEeCCCCccchhHHHHHHhhhhcc--CCce--EEEEEeCCCCCCH----HHHHHHHHcCCceEEeecCCCccccc
Confidence            578999999998862  445555566642  2455  8899999653 22    223333333333444433311     


Q ss_pred             ---------CCHHHHHHHHHhhcC---------CCEEEEEcCCCccCCCChHHHH
Q psy8674         340 ---------EGLIRTRSRGAKESR---------GEVIVFLDAHCEVGLNWLPPLL  376 (439)
Q Consensus       340 ---------~g~~~a~n~g~~~a~---------~d~i~~ld~D~~~~~~~l~~l~  376 (439)
                               .--...+|.|++..+         .-+|.|.|+|..++-..+++|-
T Consensus        74 ~~~~~~~~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR  128 (253)
T 1v84_A           74 RGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMR  128 (253)
T ss_dssp             C-------CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHH
T ss_pred             cccccCccccchHHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHh
Confidence                     012468999986542         3588999999888776666643

>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*

Probab=94.25  E-value=0.059  Score=51.10  Aligned_cols=40  Identities=15%  Similarity=-0.008  Sum_probs=32.7

Q ss_pred             CChhHHHHhhhhhc---cCcEEEEecCCcccCCCchHHHHHHHh
Q psy8674          26 EGLIRTRSRGAKES---RGEVIVFLDAHCEVGLNWLPPLLAPIY   66 (439)
Q Consensus        26 ~G~a~arN~G~~~A---~g~~i~flD~D~~~~~~~l~~l~~~~~   66 (439)
                      .|.++|.=.|+..|   +|++|+|+|+|. ..|..+..+++.+.
T Consensus       143 ~GKG~Am~aGl~~A~~~~gd~Vv~~DaDl-~iP~~v~~~~kgy~  185 (394)
T 2zu9_A          143 SGKGEGMLVGLLLAKAIGAEYVGFVDADN-YIPGAVNEYVKDYA  185 (394)
T ss_dssp             CSHHHHHHHHHHHHHHTTCSEEEECCSCB-SCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhhCCCCEEEEEeCCC-CCHHHHHHHHHHhh
Confidence            49999999999999   999999999999 55666666665544

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=93.94  E-value=0.62  Score=41.41  Aligned_cols=89  Identities=11%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc---CCCEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES---RGEVIV  359 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a---~~d~i~  359 (439)
                      ..|..+++.+.....  .  +|+|+-+   ++    .+.++...++..+.+...+...|.+.+. .+++..   ..+.++
T Consensus        28 Pli~~~l~~l~~~~~--~--~ivVv~~---~~----~i~~~~~~~g~~v~~~~~~~~~Gt~~~~-~~~~~l~~~~~d~vl   95 (252)
T 3oam_A           28 PMIQWVYEQAMQAGA--D--RVIIATD---DE----RVEQAVQAFGGVVCMTSPNHQSGTERLA-EVVAKMAIPADHIVV   95 (252)
T ss_dssp             EHHHHHHHHHHHTTC--S--EEEEEES---CH----HHHHHHHHTTCEEEECCTTCCSHHHHHH-HHHHHTTCCTTSEEE
T ss_pred             EHHHHHHHHHHhCCC--C--eEEEECC---HH----HHHHHHHHcCCEEEEcCCCCCCcHHHHH-HHHHhcCcCCCCEEE
Confidence            588888888876542  2  7777764   12    3344444444333333233445666543 344443   578999


Q ss_pred             EEcCCCc-cCCCChHHHHHhhhcCC
Q psy8674         360 FLDAHCE-VGLNWLPPLLAPIYSDR  383 (439)
Q Consensus       360 ~ld~D~~-~~~~~l~~l~~~~~~~~  383 (439)
                      ++++|.- +++..+..+++.+.+..
T Consensus        96 v~~gD~Pli~~~~i~~l~~~~~~~~  120 (252)
T 3oam_A           96 NVQGDEPLIPPAIIRQVADNLAACS  120 (252)
T ss_dssp             ECCTTCTTCCHHHHHHHHHHHHHSS
T ss_pred             EEeCCeeecCHHHHHHHHHHHHhcC
Confidence            9999995 57899999999887644

>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}

Probab=93.80  E-value=0.22  Score=44.55  Aligned_cols=74  Identities=12%  Similarity=0.093  Sum_probs=55.4

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHH----hcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHH
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSII----KRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIR  344 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~----~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~  344 (439)
                      -+|.||||.+|++ +.|...|..+.    +|.   ..+.|+||+...                         ...++.+.
T Consensus        51 ~kvAIIIPyRdR~-~hL~~fl~~lhp~L~rQ~---l~y~I~VieQ~~-------------------------~~~FNRa~  101 (287)
T 3lw6_A           51 HKMALLVPFRDRF-EELLQFVPHMTAFLKRQG---VAHHIFVLNQVD-------------------------RFRFNRAS  101 (287)
T ss_dssp             CEEEEEEEESSCH-HHHHHHHHHHHHHHHHTT---CEEEEEEEEECS-------------------------SSCCCHHH
T ss_pred             ceEEEEEEeCCHH-HHHHHHHHHHHHHHHHcC---CceEEEEEecCC-------------------------CCccchhh
Confidence            4799999999999 88888775543    342   234888886521                         13456899


Q ss_pred             HHHHHHhhcC--CCEEEEEcCCCccCCCC
Q psy8674         345 TRSRGAKESR--GEVIVFLDAHCEVGLNW  371 (439)
Q Consensus       345 a~n~g~~~a~--~d~i~~ld~D~~~~~~~  371 (439)
                      .+|.|+..|.  .|+++|-|.|..+..+.
T Consensus       102 LlNvGf~ea~~~~d~~ifHDVDLlP~dd~  130 (287)
T 3lw6_A          102 LINVGFQFASDVYDYIAMHDVDLLPLNDN  130 (287)
T ss_dssp             HHHHHHHHSCTTCCEEEEECTTEEECCTT
T ss_pred             eecccHHHHhccCCEEEEecccccccCCC
Confidence            9999999876  69999999998876553

>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}

Probab=93.26  E-value=0.14  Score=43.06  Aligned_cols=35  Identities=14%  Similarity=0.223  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhh----cCCCEEEEEcCC---CccCCCChHHHH
Q psy8674         342 LIRTRSRGAKE----SRGEVIVFLDAH---CEVGLNWLPPLL  376 (439)
Q Consensus       342 ~~~a~n~g~~~----a~~d~i~~ld~D---~~~~~~~l~~l~  376 (439)
                      ...|||..+..    ...++++|+|+|   ..++|+.+.+|+
T Consensus        37 I~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl   78 (203)
T 2c0n_A           37 VAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKF   78 (203)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHH
Confidence            55677766654    557999999999   999999999998

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=93.11  E-value=1  Score=40.10  Aligned_cols=88  Identities=19%  Similarity=0.278  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc---CCCEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES---RGEVIV  359 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a---~~d~i~  359 (439)
                      ..|..+++.+.+.. .   .+|+|+-+   ++    .+.++...++..+.+...+...|.+. ...+++..   ..++++
T Consensus        35 Pli~~~l~~l~~~~-i---~~VvVvt~---~~----~i~~~~~~~g~~v~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vl  102 (256)
T 3tqd_A           35 PMIQHVYESAIKSG-A---EEVVIATD---DK----RIRQVAEDFGAVVCMTSSDHQSGTER-IAEAAVALGFEDDEIIV  102 (256)
T ss_dssp             EHHHHHHHHHHHTT-C---SEEEEEES---CH----HHHHHHHHTTCEEEECCTTCCSHHHH-HHHHHHHTTCCTTCEEE
T ss_pred             hHHHHHHHHHHhCC-C---CEEEEECC---HH----HHHHHHHHcCCeEEEeCCCCCCcHHH-HHHHHHHhCcCCCCEEE
Confidence            47788888887643 1   27877754   12    33344444443333222233455554 44566654   579999


Q ss_pred             EEcCCCc-cCCCChHHHHHhhhcC
Q psy8674         360 FLDAHCE-VGLNWLPPLLAPIYSD  382 (439)
Q Consensus       360 ~ld~D~~-~~~~~l~~l~~~~~~~  382 (439)
                      ++++|.- +++..+..+++.+.++
T Consensus       103 v~~gD~Pli~~~~i~~li~~~~~~  126 (256)
T 3tqd_A          103 CLQGDEPLIPPDAIRKLAEDLDEH  126 (256)
T ss_dssp             EECTTCCCCCHHHHHHHHHHHHHC
T ss_pred             EEeCCcccCCHHHHHHHHHHHHhC
Confidence            9999995 5789999999998764

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=93.07  E-value=0.28  Score=43.72  Aligned_cols=66  Identities=9%  Similarity=0.115  Sum_probs=45.1

Q ss_pred             HHHHHHHHhcCCcEEEEE--ecCCCChhHHHHhhhhhc---cCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeE
Q psy8674           4 KKLEDYIERFNGKVRLIR--NTEREGLIRTRSRGAKES---RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIM   72 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~--~~~n~G~a~arN~G~~~A---~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~   72 (439)
                      +.+.++++++.  ++++.  .+...|.+++... ++..   ..+.++++++|.- +++..++.+++.+.+....+
T Consensus        52 ~~i~~~~~~~g--~~v~~~~~~~~~Gt~~~~~~-~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~  123 (252)
T 3oam_A           52 ERVEQAVQAFG--GVVCMTSPNHQSGTERLAEV-VAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPM  123 (252)
T ss_dssp             HHHHHHHHHTT--CEEEECCTTCCSHHHHHHHH-HHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSE
T ss_pred             HHHHHHHHHcC--CEEEEcCCCCCCcHHHHHHH-HHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCE
Confidence            45677777765  44443  3355677665443 3333   5789999999994 68999999999987654433

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=93.04  E-value=0.59  Score=41.92  Aligned_cols=88  Identities=11%  Similarity=0.146  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEE--cCCCCCHHHHHHHHHhhc---CCCE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIR--NTEREGLIRTRSRGAKES---RGEV  357 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~--~~~~~g~~~a~n~g~~~a---~~d~  357 (439)
                      ..|..+++.+.+.. .   .+|+|+-+   ++    .+.++...++  +.++.  .....|.+. ...+++..   ..++
T Consensus        44 Pmi~~~l~~l~~~~-i---~~IvV~t~---~~----~i~~~~~~~g--~~v~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~  109 (264)
T 3k8d_A           44 PMIVHVLERARESG-A---ERIIVATD---HE----DVARAVEAAG--GEVCMTRADHQSGTER-LAEVVEKCAFSDDTV  109 (264)
T ss_dssp             EHHHHHHHHHHHTT-C---SEEEEEES---CH----HHHHHHHHTT--CEEEECCTTCCSHHHH-HHHHHHHHTCCTTCE
T ss_pred             EHHHHHHHHHHhCC-C---CEEEEECC---HH----HHHHHHHHcC--CEEEEecCCCCCCHHH-HHHHHHHhccCCCCE
Confidence            46777888877643 2   27877764   22    2334444444  44443  333445444 34444443   5799


Q ss_pred             EEEEcCCCc-cCCCChHHHHHhhhcCCC
Q psy8674         358 IVFLDAHCE-VGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       358 i~~ld~D~~-~~~~~l~~l~~~~~~~~~  384 (439)
                      ++++++|.- +++..+..+++.+.+...
T Consensus       110 vlv~~gD~Pli~~~~i~~li~~~~~~~~  137 (264)
T 3k8d_A          110 IVNVQGDEPMIPATIIRQVADNLAQRQV  137 (264)
T ss_dssp             EEEECTTCTTCCHHHHHHHHHHHHTSSC
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHhhcCC
Confidence            999999996 578999999999876554

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=92.42  E-value=1.7  Score=37.75  Aligned_cols=90  Identities=9%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-----CCCCHHHHHHHHHhhc-CCC
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-----EREGLIRTRSRGAKES-RGE  356 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-----~~~g~~~a~n~g~~~a-~~d  356 (439)
                      ..|..+++.+.+...-+   +|+|+-+   ++    .+.++...++  +.++..+     ...+...+...|++.. ..+
T Consensus        29 pli~~~i~~~~~~~~~~---~ivv~~~---~~----~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~v~~al~~~~~~d   96 (229)
T 1qwj_A           29 PLIGWVLRAALDAGVFQ---SVWVSTD---HD----EIENVAKQFG--AQVHRRSSETSKDSSTSLDAIVEFLNYHNEVD   96 (229)
T ss_dssp             EHHHHHHHHHHHHTCCS---EEEEEES---CH----HHHHHHHHTT--CEEEECCGGGSSTTCCHHHHHHHHHTTCTTCS
T ss_pred             EHHHHHHHHHHhCCCcC---EEEEECC---hH----HHHHHHHHcC--CEEEeChhhhcCCCCcHHHHHHHHHHhcCCCC
Confidence            57888888887654212   7777763   12    2333344443  4555443     2234445666777776 579


Q ss_pred             EEEEEcCCCcc-CCCChHHHHHhhhcCCC
Q psy8674         357 VIVFLDAHCEV-GLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       357 ~i~~ld~D~~~-~~~~l~~l~~~~~~~~~  384 (439)
                      +++++++|.-+ ++..+..+++.+...+.
T Consensus        97 ~vlv~~~D~Pli~~~~i~~l~~~~~~~~~  125 (229)
T 1qwj_A           97 IVGNIQATSPCLHPTDLQKVAEMIREEGY  125 (229)
T ss_dssp             EEEEECTTCTTCCHHHHHHHHHHHHSSCC
T ss_pred             EEEEecCCCCcCCHHHHHHHHHHHHhCCC
Confidence            99999999874 78899999998876554

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=92.39  E-value=1  Score=40.43  Aligned_cols=93  Identities=8%  Similarity=0.132  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH---HcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIV  359 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~  359 (439)
                      ..|..+|+++.+...    .+|+||-+......   + .++..   .++..+.++..+...|.+.+...++.....+.++
T Consensus        56 pli~~~l~~l~~~g~----~~iivv~~~~~~~~---~-~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~l  127 (269)
T 4ecm_A           56 PMIYHAVYKLKQCDI----TDIMIITGKEHMGD---V-VSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFVGNDRMV  127 (269)
T ss_dssp             EHHHHHHHHHHHTTC----CEEEEEECTTTHHH---H-HHHHTTSGGGTCEEEEEECSSCCCHHHHHHTTHHHHTTSEEE
T ss_pred             EHHHHHHHHHHHCCC----CEEEEECChhhHHH---H-HHHHhhccccCceEEEeeCCccCcHHHHHHHHHHhcCCCcEE
Confidence            688899999887532    27777765432222   2 22222   2233566666667789999999888877788999


Q ss_pred             EEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         360 FLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       360 ~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                      ++.+|..+. ..+..+++.+.+...
T Consensus       128 v~~~D~~~~-~~l~~l~~~~~~~~~  151 (269)
T 4ecm_A          128 VILGDNIFS-DDIRPYVEEFTNQKE  151 (269)
T ss_dssp             EEETTEEES-SCSHHHHHHHHTSSS
T ss_pred             EEeCCccCc-cCHHHHHHHHHhcCC
Confidence            999999775 678888888765443

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0

Probab=92.17  E-value=1.9  Score=38.86  Aligned_cols=119  Identities=18%  Similarity=0.167  Sum_probs=71.9

Q ss_pred             CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCC--C----
Q psy8674         268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTERE--G----  341 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~--g----  341 (439)
                      ++.+.|++.+-+.-...+..++.||+..+.. ....+.|+.++-+++..+ .++++.+.++..+.++..+...  +    
T Consensus         3 ~m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~-~L~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (276)
T 3tzt_A            3 AMADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLK-DLGEDLKKFSYTLYPIRATDDLFSFAKVT   80 (276)
T ss_dssp             --CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHH-HHHHHHHTTTCEEEEEECC----------
T ss_pred             ceeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHH-HHHHHHHHcCCEEEEEEeCHHHHhcCccc
Confidence            4568888777655447788899999987653 233788888887777655 7777777665567776554321  0    


Q ss_pred             -----HHHHHHHHHhhc--CCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674         342 -----LIRTRSRGAKES--RGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP  389 (439)
Q Consensus       342 -----~~~a~n~g~~~a--~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~  389 (439)
                           ....+-..-...  .-+-+++||+|..+..+ +.+|.+.=..+...++++
T Consensus        81 ~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~d-i~~L~~~dl~~~~~aav~  134 (276)
T 3tzt_A           81 DRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINP-LDDLLRTDISDYILAAAS  134 (276)
T ss_dssp             ---CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSC-SHHHHTCCCTTSSEEEEE
T ss_pred             cccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCC-HHHHhhcCCCCCeEEEEE
Confidence                 111222222233  36899999999988654 666665312233344444

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=91.63  E-value=0.77  Score=40.94  Aligned_cols=160  Identities=17%  Similarity=0.200  Sum_probs=82.4

Q ss_pred             HHHHHHHHhcCCcEEEEEe--cCCCChhHHHHhhhhhc---cCcEEEEecCCcc-cCCCchHHHHHHHhcCCC-eEeeee
Q psy8674           4 KKLEDYIERFNGKVRLIRN--TEREGLIRTRSRGAKES---RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRK-IMTVPV   76 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~--~~n~G~a~arN~G~~~A---~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~-~~v~~~   76 (439)
                      +.+.++++++.  ++++..  +...|.++. ..|++..   ..++++++++|.- +++..++.+++.+.+++. .++...
T Consensus        59 ~~i~~~~~~~g--~~v~~~~~~~~~Gt~~i-~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~  135 (256)
T 3tqd_A           59 KRIRQVAEDFG--AVVCMTSSDHQSGTERI-AEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLC  135 (256)
T ss_dssp             HHHHHHHHHTT--CEEEECCTTCCSHHHHH-HHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEE
T ss_pred             HHHHHHHHHcC--CeEEEeCCCCCCcHHHH-HHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence            45677777775  455432  344576553 3455544   5799999999995 689999999999986532 332222


Q ss_pred             eecc------cCCCcccccccCCCCccccccccccccccCCCchH-HHhhccCCCCCccCccccceEEEEeHHHHHHhCC
Q psy8674          77 IDGI------DYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPER-EAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGG  149 (439)
Q Consensus        77 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGg  149 (439)
                      ....      +.+......         ..-+..+.|.....+.. ...............+...+..++|++++++.-.
T Consensus       136 ~~v~~~~~~~~p~~vkvv~---------d~~g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~  206 (256)
T 3tqd_A          136 TPITEVDELFNPHSTKVVL---------NRRNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLS  206 (256)
T ss_dssp             EECCCHHHHTCTTSCEEEE---------CTTSBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHH
T ss_pred             eEcCCHHHhhCCCccEEEE---------CCCCEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHh
Confidence            1111      111100000         00011122222222100 0000000000001224467789999999999876


Q ss_pred             CCCCCCCccchhhHH--HHHHHHhCCcEEEec
Q psy8674         150 YDPGLLVWGGENFEL--SFKIWMCGGSIEWVP  179 (439)
Q Consensus       150 fde~~~~~~~ED~Dl--~~Rl~~~G~~i~~~p  179 (439)
                      ..+.-    .|..|-  .+|+...|++|....
T Consensus       207 l~~s~----lE~~e~leqlr~le~G~~i~~~~  234 (256)
T 3tqd_A          207 WDACP----AEKMEALEQLRILWHGGRIHMVV  234 (256)
T ss_dssp             SCCCH----HHHHHTCTTHHHHHTTCCCEEEE
T ss_pred             CCCCc----ccchhhhHHHHHHHCCCeEEEEE
Confidence            55432    244432  268899999977654

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=91.35  E-value=1.2  Score=40.61  Aligned_cols=98  Identities=8%  Similarity=0.110  Sum_probs=63.1

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      .+|.++.  ..|...|+.+.....    .+|+||-.+...+    .++++...   ++..+.++..+...|.+.+...|.
T Consensus        27 llpi~gk--pli~~~l~~l~~~gi----~~I~vv~~~~~~~----~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~   96 (293)
T 1fxo_A           27 LLPVYDK--PMIYYPLSTLMLAGI----REILIISTPQDTP----RFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGE   96 (293)
T ss_dssp             GSEETTE--ETTHHHHHHHHHTTC----CEEEEEECTTTHH----HHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTH
T ss_pred             eCeECCE--eHHHHHHHHHHHCCC----CEEEEEeccccHH----HHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHH
Confidence            3455664  577888888876432    2788776443332    23333332   333466666666778888888888


Q ss_pred             hhcCCCEEEEEcCCCccCCCChHHHHHhhhc
Q psy8674         351 KESRGEVIVFLDAHCEVGLNWLPPLLAPIYS  381 (439)
Q Consensus       351 ~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~  381 (439)
                      .....+-++++.+|..+....+..+++.+..
T Consensus        97 ~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~  127 (293)
T 1fxo_A           97 SFIGNDLSALVLGDNLYYGHDFHELLGSASQ  127 (293)
T ss_dssp             HHHTTSEEEEEETTEEEECTTHHHHHHHHHT
T ss_pred             HHhCCCCEEEEECChhccCccHHHHHHHHHh
Confidence            7766566666669988755678999987753

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=91.10  E-value=0.92  Score=39.41  Aligned_cols=89  Identities=12%  Similarity=0.111  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-----CCCCHHHHHHHHHhhcC--C
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-----EREGLIRTRSRGAKESR--G  355 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-----~~~g~~~a~n~g~~~a~--~  355 (439)
                      ..|..+++.+.+....+   +|+||-+.   +    .+.++.+.++  +.++..+     ...|...+...|++...  .
T Consensus        30 pll~~~l~~~~~~~~~~---~ivvv~~~---~----~i~~~~~~~~--~~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~~   97 (228)
T 1ezi_A           30 SLLGHTINAAISSKCFD---RIIVSTDG---G----LIAEEAKNFG--VEVVLRPAELASDTASSISGVIHALETIGSNS   97 (228)
T ss_dssp             EHHHHHHHHHHHHCCCS---EEEEEESC---H----HHHHHHHHTT--CEEEECCC------CHHHHHHHHHHHHHTCCS
T ss_pred             CHHHHHHHHHHhCCCCC---EEEEECCC---H----HHHHHHHHcC--CEEEeCchHHcCCCCChHHHHHHHHHHhCCCC
Confidence            57888888887654222   78887642   2    2233334443  4444443     23455667777777663  5


Q ss_pred             CEEEEEcCCCc-cCCCChHHHHHhhhcCC
Q psy8674         356 EVIVFLDAHCE-VGLNWLPPLLAPIYSDR  383 (439)
Q Consensus       356 d~i~~ld~D~~-~~~~~l~~l~~~~~~~~  383 (439)
                      ++++++++|.. +++..+..+++.+...+
T Consensus        98 d~vlv~~~D~P~~~~~~i~~l~~~~~~~~  126 (228)
T 1ezi_A           98 GTVTLLQPTSPLRTGAHIREAFSLFDEKI  126 (228)
T ss_dssp             EEEEECCTTCTTCCHHHHHHHHTTCCTTT
T ss_pred             CEEEEEcCCCCcCCHHHHHHHHHHHHhcC
Confidence            89999999986 47888999998876554

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=90.91  E-value=2.9  Score=36.52  Aligned_cols=87  Identities=14%  Similarity=0.168  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC--CCCCHHHHHHHHHhhcCCCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--EREGLIRTRSRGAKESRGEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~g~~~a~n~g~~~a~~d~i~~  360 (439)
                      ..|..+++.+......+   +|+||-+.   +    .+.++...+  .+.++..+  ...|.+.+. .+++....+.+++
T Consensus        28 pli~~~i~~~~~~~~~~---~ivvv~~~---~----~i~~~~~~~--~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~lv   94 (245)
T 1h7e_A           28 PMIQHVYERALQVAGVA---EVWVATDD---P----RVEQAVQAF--GGKAIMTRNDHESGTDRLV-EVMHKVEADIYIN   94 (245)
T ss_dssp             EHHHHHHHHHHTCTTCC---EEEEEESC---H----HHHHHHHHT--TCEEEECCSCCSSHHHHHH-HHHHHSCCSEEEE
T ss_pred             hHHHHHHHHHHhCCCCC---eEEEECCc---H----HHHHHHHHc--CCeEEeCCCccCCcHHHHH-HHHHhCCCCEEEE
Confidence            68888898887654212   77777642   2    233334443  35666543  234555444 4555556799999


Q ss_pred             EcCCCcc-CCCChHHHHHhhhcC
Q psy8674         361 LDAHCEV-GLNWLPPLLAPIYSD  382 (439)
Q Consensus       361 ld~D~~~-~~~~l~~l~~~~~~~  382 (439)
                      +++|..+ ++..+..+++.+...
T Consensus        95 ~~~D~P~~~~~~i~~l~~~~~~~  117 (245)
T 1h7e_A           95 LQGDEPMIRPRDVETLLQGMRDD  117 (245)
T ss_dssp             CCTTCTTCCHHHHHHHHHHHHHC
T ss_pred             EcCCcCcCCHHHHHHHHHHHHhC
Confidence            9999974 788899999988665

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=90.87  E-value=1.2  Score=39.69  Aligned_cols=63  Identities=10%  Similarity=0.107  Sum_probs=42.3

Q ss_pred             HHHHHHHHhcCCcEEEEE--ecCCCChhHHHHhhhhhc---cCcEEEEecCCcc-cCCCchHHHHHHHhcCC
Q psy8674           4 KKLEDYIERFNGKVRLIR--NTEREGLIRTRSRGAKES---RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR   69 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~--~~~n~G~a~arN~G~~~A---~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~   69 (439)
                      +.+.++++++.  ++++.  .+...|.. +.-.|++..   ..++++++++|.- +++..++.+++.+.+++
T Consensus        52 ~~i~~~~~~~g--~~v~~~~~~~~~Gt~-~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~  120 (253)
T 4fcu_A           52 ERIAEICRAEG--VDVVLTSADHPSGTD-RLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKP  120 (253)
T ss_dssp             HHHHHHHHTTT--CCEEECCTTCCCHHH-HHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcC--CeEEEeCCCCCChHH-HHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCC
Confidence            45667777765  44443  23344543 334455544   3589999999995 68999999999998764

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=90.41  E-value=2.1  Score=39.02  Aligned_cols=97  Identities=11%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      .+|.++.  ..|...|+.+.....    .+|+||-.....+    .++++...   ++..+.++..+...|.+.+.-.|+
T Consensus        28 llpi~gk--pli~~~l~~l~~~gi----~~Iivv~~~~~~~----~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~   97 (295)
T 1lvw_A           28 LLPIYDK--PMIYYPLSVLMLAGI----RDILIISTPRDLP----LYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGK   97 (295)
T ss_dssp             GSEETTE--ETTHHHHHHHHHTTC----CEEEEEECTTTHH----HHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTH
T ss_pred             ecEECCe--eHHHHHHHHHHHCCC----CeEEEEeccchHH----HHHHHhhhccccCceEEEeeCCCCCChHHHHHHHH
Confidence            3456664  578888888876431    2788775433322    33343332   333466666666678888888888


Q ss_pred             hhcC-CCEEEEEcCCCccCCCChHHHHHhhhc
Q psy8674         351 KESR-GEVIVFLDAHCEVGLNWLPPLLAPIYS  381 (439)
Q Consensus       351 ~~a~-~d~i~~ld~D~~~~~~~l~~l~~~~~~  381 (439)
                      .... .++++++ +|..+....+..+++....
T Consensus        98 ~~i~~~~~~lv~-gD~~~~~~~l~~~l~~~~~  128 (295)
T 1lvw_A           98 DFIGDSKVALVL-GDNVFYGHRFSEILRRAAS  128 (295)
T ss_dssp             HHHTTSCEEEEE-TTCCEECTTHHHHHHHHHT
T ss_pred             HHhCCCcEEEEE-CCccccCcCHHHHHHHHHH
Confidence            7665 4555555 8988755778888887754

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=90.32  E-value=5  Score=35.71  Aligned_cols=67  Identities=6%  Similarity=0.089  Sum_probs=48.5

Q ss_pred             HHHHHHHh---cCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeE
Q psy8674           5 KLEDYIER---FNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIM   72 (439)
Q Consensus         5 ~l~~~~~~---~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~   72 (439)
                      .+.+++..   +...+.++..++..|.+.+.-.++.....+.++++++|..+. .-+..+++.+.+....+
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~lv~~~D~~~~-~~l~~l~~~~~~~~~~~  153 (269)
T 4ecm_A           84 DVVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFVGNDRMVVILGDNIFS-DDIRPYVEEFTNQKEGA  153 (269)
T ss_dssp             HHHHHHTTSGGGTCEEEEEECSSCCCHHHHHHTTHHHHTTSEEEEEETTEEES-SCSHHHHHHHHTSSSSE
T ss_pred             HHHHHHhhccccCceEEEeeCCccCcHHHHHHHHHHhcCCCcEEEEeCCccCc-cCHHHHHHHHHhcCCCe
Confidence            44555543   323566776667789999988888877778999999999876 66788888887654443

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=89.99  E-value=1.1  Score=40.12  Aligned_cols=158  Identities=10%  Similarity=0.125  Sum_probs=81.2

Q ss_pred             HHHHHHHHhcCCcEEEEE--ecCCCChhHHHHhhhhhc---cCcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEeeeee
Q psy8674           4 KKLEDYIERFNGKVRLIR--NTEREGLIRTRSRGAKES---RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVI   77 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~--~~~n~G~a~arN~G~~~A---~g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~   77 (439)
                      +.+.++++++.  ++++.  .+...|.++ ...+++..   ..++++++++|.- +++..++.+++.+.+....++....
T Consensus        68 ~~i~~~~~~~g--~~v~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~  144 (264)
T 3k8d_A           68 EDVARAVEAAG--GEVCMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAV  144 (264)
T ss_dssp             HHHHHHHHHTT--CEEEECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred             HHHHHHHHHcC--CEEEEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEE
Confidence            45667777765  55553  234556544 23333332   5799999999995 5899999999999865443332222


Q ss_pred             eccc------CCCcccccccCCCCccccccccccccccCCCc-hHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCC
Q psy8674          78 DGID------YQTWEFRSVYEPDHHYRGIFEWGMLYKENELP-EREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGY  150 (439)
Q Consensus        78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgf  150 (439)
                      ..-+      .+......         ..-+..+.|.....+ .+..... .....-.......+..+++++++++.-..
T Consensus       145 ~v~d~~~~~~p~~vkVv~---------d~~g~~l~fsr~~ip~~r~~~~~-~~~~~~~~~~~~~GiY~y~~~~l~~~~~~  214 (264)
T 3k8d_A          145 PIHNAEEAFNPNAVKVVL---------DAEGYALYFSRATIPWDRDRFAE-GLETVGDNFLRHLGIYGYRAGFIRRYVNW  214 (264)
T ss_dssp             ECCSHHHHTCTTSCEEEE---------CTTSBEEEEESSCCSCCHHHHHH-CSSCCCSCCEEECSEEEEEHHHHHHHHHS
T ss_pred             EcCCHHHccCCCceEEEE---------CCCCeEEEEecCCCCCCCccccc-cccccCCcceEEEEEEEECHHHHHHHHhC
Confidence            2111      11111000         000111222222221 0110000 00000012244567899999999987655


Q ss_pred             CCCCCCccchhhHH--HHHHHHhCCcEEEe
Q psy8674         151 DPGLLVWGGENFEL--SFKIWMCGGSIEWV  178 (439)
Q Consensus       151 de~~~~~~~ED~Dl--~~Rl~~~G~~i~~~  178 (439)
                      ++.-    .|-.|-  .+|+.+.|++|...
T Consensus       215 ~~~~----lE~~e~leqlr~le~G~~I~~~  240 (264)
T 3k8d_A          215 QPSP----LEHIEMLEQLRVLWYGEKIHVA  240 (264)
T ss_dssp             CCCH----HHHHHTCTTHHHHHTTCCEEEE
T ss_pred             CCCh----hhhHHHHHHHHHHHCCCceEEE
Confidence            5432    133221  26888999998765

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=89.83  E-value=2.3  Score=41.98  Aligned_cols=105  Identities=12%  Similarity=0.147  Sum_probs=73.5

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES  353 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a  353 (439)
                      .+|..|.+  .|.-.|+.+.+....    +|+||-.. ..+.+++.+.++...++..+.++..++..|.+.|...+....
T Consensus        34 l~pv~gkp--~i~~~l~~~~~~g~~----~i~vv~~~-~~~~i~~~~~~~~~~~~~~i~~~~q~~~lGTa~Av~~a~~~l  106 (501)
T 3st8_A           34 LHTLAGRS--MLSHVLHAIAKLAPQ----RLIVVLGH-DHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSAL  106 (501)
T ss_dssp             GCEETTEE--HHHHHHHHHHHHCCS----EEEEEECT-THHHHHHHHHHHHHHHTSCCEEEECSSCCCHHHHHHHHHTTS
T ss_pred             HeEECChh--HHHHHHHHHHhCCCC----EEEEEeCC-CHHHHHHHHHHHHHhcCCcEEEEEcCCCCCcHHHHHHHHHHh
Confidence            56777764  888888888776532    77777643 333344455555555566788888888899999999998876


Q ss_pred             CC---CEEEEEcCCCc-cCCCChHHHHHhhhcCCCE
Q psy8674         354 RG---EVIVFLDAHCE-VGLNWLPPLLAPIYSDRKI  385 (439)
Q Consensus       354 ~~---d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~  385 (439)
                      ..   +.++++.+|+. +..+.+..|++........
T Consensus       107 ~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~  142 (501)
T 3st8_A          107 PDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAA  142 (501)
T ss_dssp             CTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCS
T ss_pred             ccccccceeeecCcceeecHHHHHHHHHHHhhcccc
Confidence            53   45677777765 5677888998887665553

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=89.49  E-value=0.39  Score=40.62  Aligned_cols=96  Identities=11%  Similarity=-0.013  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhhc--CCCEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKES--RGEVIV  359 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~a--~~d~i~  359 (439)
                      ..|..+++.+.....  .  +|+||-+.. .+    .+.++....  .+.++..+ ...|...+...|++..  ..++++
T Consensus        32 pll~~~l~~l~~~~~--~--~i~vv~~~~-~~----~~~~~~~~~--~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~vl  100 (197)
T 2wee_A           32 TVLGATLDVARQAGF--D--QLILTLGGA-AS----AVRAAMALD--GTDVVVVEDVERGCAASLRVALARVHPRATGIV  100 (197)
T ss_dssp             EHHHHHHHHHHHTTC--S--EEEEEECTT-HH----HHHHHSCCT--TSEEEECC----CCHHHHHHHHTTSCTTEEEEE
T ss_pred             cHHHHHHHHHHhcCC--C--cEEEEeCCC-HH----HHHHHhccC--CCEEEECCCcccCHHHHHHHHHHHhcccCCeEE
Confidence            688888888876431  1  777775432 21    233332222  35565543 3357888888898877  468999


Q ss_pred             EEcCCCc-cCCCChHHHHHhhhcCCCEEEEeee
Q psy8674         360 FLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       360 ~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~  391 (439)
                      ++++|.. +++..+..+++. .. ...+++|..
T Consensus       101 v~~~D~P~~~~~~i~~l~~~-~~-~~~i~~~~~  131 (197)
T 2wee_A          101 LMLGDQPQVAPATLRRIIDV-GP-ATEIMVCRY  131 (197)
T ss_dssp             EEETTCTTCCHHHHHHHHHH-GG-GSSEEEEEE
T ss_pred             EEeCCcCCCCHHHHHHHHhh-cC-CCCEEEEec
Confidence            9999995 578889999987 43 334455543

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=88.91  E-value=1.5  Score=37.27  Aligned_cols=89  Identities=7%  Similarity=0.098  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CC-CCHHHHHHHHHhhcCCCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-ER-EGLIRTRSRGAKESRGEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~-~g~~~a~n~g~~~a~~d~i~~  360 (439)
                      ..|..+++.+....   .  +|+||-+...    + .+.    ..  .+.++..+ .. .|...+...|++....+++++
T Consensus        34 pli~~~l~~l~~~~---~--~ivvv~~~~~----~-~~~----~~--~~~~v~~~~~~~~G~~~si~~~l~~~~~~~vlv   97 (201)
T 1e5k_A           34 PLWQHVADALMTQL---S--HVVVNANRHQ----E-IYQ----AS--GLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLF   97 (201)
T ss_dssp             EHHHHHHHHHHHHC---S--CEEEECSSSH----H-HHH----TT--SCCEECCCTTCCCSHHHHHHHHHHHCCSSEEEE
T ss_pred             eHHHHHHHHHHhhC---C--EEEEEcCCcH----H-HHh----hc--CCeEEecCCCCCCCHHHHHHHHHHhCCCCcEEE
Confidence            67888888877431   2  7777754321    1 111    22  35566543 23 688999999999988999999


Q ss_pred             EcCCCc-cCCCChHHHHHhhhcCCCEEEEe
Q psy8674         361 LDAHCE-VGLNWLPPLLAPIYSDRKIMTVP  389 (439)
Q Consensus       361 ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~  389 (439)
                      +++|.- ++++.+..+++. . .+..+++|
T Consensus        98 ~~~D~P~i~~~~i~~l~~~-~-~~~~~~~~  125 (201)
T 1e5k_A           98 CPCDTPYIPPDLAARLNHQ-R-KDAPVVWV  125 (201)
T ss_dssp             EETTCTTCCTTHHHHHHHT-C-TTCSEEEE
T ss_pred             EeCCcCcCCHHHHHHHHhh-c-CCCCEEEE
Confidence            999994 688889999987 3 33344444

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=88.61  E-value=0.9  Score=40.97  Aligned_cols=97  Identities=12%  Similarity=0.037  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHH-------------------HHHH-cCCcEEEEEcCCCCCH
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED-------------------YIQR-FNGKVRLIRNTEREGL  342 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~-------------------~~~~-~~~~v~~i~~~~~~g~  342 (439)
                      ..|..+|+.+.+...    .+|+||-.. ..+.+.+.+..                   +... .+..+.++..+...|.
T Consensus        34 pli~~~l~~l~~~gi----~~i~vv~~~-~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt  108 (281)
T 3juk_A           34 PLIQYAVEEAMEAGC----EVMAIVTGR-NKRSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGL  108 (281)
T ss_dssp             BHHHHHHHHHHHHTC----CEEEEEECT-THHHHHHHTSCCC--------CCHHHHHHHHHHHHHHCEEEEEECSSCCCH
T ss_pred             EHHHHHHHHHHhCCC----CEEEEEecC-CHHHHHHHHhcchhhhhhhhcccchhhhhhhhccccCccEEEEecCCCCCc
Confidence            588888888877542    177777542 22222211110                   0000 1235666766777899


Q ss_pred             HHHHHHHHhhcCCCEEEEEcCCCccCCC----ChHHHHHhhhcCCC
Q psy8674         343 IRTRSRGAKESRGEVIVFLDAHCEVGLN----WLPPLLAPIYSDRK  384 (439)
Q Consensus       343 ~~a~n~g~~~a~~d~i~~ld~D~~~~~~----~l~~l~~~~~~~~~  384 (439)
                      +.+...|+.....+.++++.+|..+.++    .+..+++.+.....
T Consensus       109 ~~al~~a~~~l~~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~  154 (281)
T 3juk_A          109 GHAILTGEALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC  154 (281)
T ss_dssp             HHHHHHTHHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCCCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC
Confidence            9999999888777889999999977777    79999988765443

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=88.55  E-value=2.2  Score=38.81  Aligned_cols=96  Identities=13%  Similarity=0.155  Sum_probs=59.6

Q ss_pred             EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH---cCCcEEEEEcCCCCCHHHHHHHHHh
Q psy8674         275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR---FNGKVRLIRNTEREGLIRTRSRGAK  351 (439)
Q Consensus       275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~v~~i~~~~~~g~~~a~n~g~~  351 (439)
                      +|.++.  ..|...|+.+.....    .+|+||-.....+    .++++...   ++..+.++..+...|.+.+.-.|+.
T Consensus        29 lpi~gk--pli~~~l~~l~~~gi----~~I~vv~~~~~~~----~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~   98 (296)
T 1mc3_A           29 LPIYDK--PMIYYPLSVLMLAGI----REILIITTPEDKG----YFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGET   98 (296)
T ss_dssp             SEETTE--ETTHHHHHHHHHTTC----CEEEEEECTTTHH----HHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTHH
T ss_pred             eEECCe--eHHHHHHHHHHhCCC----CcEEEEechhHHH----HHHHHHhcccccCceEEEeccCCCCCHHHHHHHHHH
Confidence            455664  577888888775431    2788875433322    33344332   2334666666666788888888887


Q ss_pred             hcCC-CEEEEEcCCCccCCCChHHHHHhhhc
Q psy8674         352 ESRG-EVIVFLDAHCEVGLNWLPPLLAPIYS  381 (439)
Q Consensus       352 ~a~~-d~i~~ld~D~~~~~~~l~~l~~~~~~  381 (439)
                      .... ++++++ +|..+....+..+++....
T Consensus        99 ~i~~~~~~lv~-gD~~~~~~~l~~~l~~~~~  128 (296)
T 1mc3_A           99 FLNGEPSCLVL-GDNIFFGQGFSPKLRHVAA  128 (296)
T ss_dssp             HHTTSCEEEEE-TTEEEECSSCHHHHHHHTT
T ss_pred             HhCCCCEEEEE-CCccccccCHHHHHHHHHH
Confidence            6654 455555 8987755678888887754

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=87.80  E-value=2.1  Score=38.93  Aligned_cols=97  Identities=13%  Similarity=0.094  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHH------HHHH-------------cCCcEEEEEcCCCCCHH
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED------YIQR-------------FNGKVRLIRNTEREGLI  343 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~------~~~~-------------~~~~v~~i~~~~~~g~~  343 (439)
                      ..|..+|+.+.+...    .+|+||-+...+ .+.+.+..      ....             .+..+.++..+...|.+
T Consensus        46 pli~~~l~~l~~~g~----~~i~vv~~~~~~-~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt~  120 (297)
T 2ux8_A           46 PLIQYAVDEAVEAGI----EQMIFVTGRGKS-ALEDHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLG  120 (297)
T ss_dssp             EHHHHHHHHHHHTTC----CEEEEEECTTCH-HHHHHTSCCHHHHHHHHTTTCCGGGGTTSCCSTTSEEEEECCSCCCHH
T ss_pred             EHHHHHHHHHHhCCC----CEEEEEeCCCHH-HHHHHHhhhhhhhhhhhhccchhhhhhhcccCCCceEEEeCCCCCChH
Confidence            688888888876532    277777654322 22212111      0000             11247777767778999


Q ss_pred             HHHHHHHhhcCCCEEEEEcCCCccC--CCChHHHHHhhhcCCC
Q psy8674         344 RTRSRGAKESRGEVIVFLDAHCEVG--LNWLPPLLAPIYSDRK  384 (439)
Q Consensus       344 ~a~n~g~~~a~~d~i~~ld~D~~~~--~~~l~~l~~~~~~~~~  384 (439)
                      .+...|+.....+.++++.+|..+.  +..+..+++...+...
T Consensus       121 ~al~~a~~~~~~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~  163 (297)
T 2ux8_A          121 HAVWCARDIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG  163 (297)
T ss_dssp             HHHHTTHHHHCSSCEEEECTTEEEESSSCHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCCcEEEEeCCeecCCChHHHHHHHHHHHhcCC
Confidence            9999888877678899999999987  6889999988765443

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=87.09  E-value=0.7  Score=39.02  Aligned_cols=96  Identities=10%  Similarity=-0.020  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhhc--CCCEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKES--RGEVIV  359 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~a--~~d~i~  359 (439)
                      ..|..+++.+.... . .  +|+||-+... +    .+.++...+  .+.++..+ ...|...+...|++..  ..++++
T Consensus        32 pli~~~l~~l~~~~-~-~--~i~vv~~~~~-~----~~~~~~~~~--~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~vl  100 (199)
T 2waw_A           32 TLLGATLAMARRCP-F-D--QLIVTLGGAA-D----EVLEKVELD--GLDIVLVDDAGLGCSSSLKSALTWVDPTAEGIV  100 (199)
T ss_dssp             EHHHHHHHHHHTSS-C-S--EEEEEECTTH-H----HHHHHSCCT--TSEEEECCCCCTTCCCHHHHHHHTSCTTCSEEE
T ss_pred             CHHHHHHHHHHhCC-C-C--cEEEEeCCCH-H----HHHHHhccC--CCEEEECCCcccCHHHHHHHHHHhhhccCCeEE
Confidence            68888888887643 1 2  7777765322 1    233333222  34555433 3356677888888877  579999


Q ss_pred             EEcCCCcc-CCCChHHHHHhhhcCCCEEEEeee
Q psy8674         360 FLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPVI  391 (439)
Q Consensus       360 ~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~~  391 (439)
                      ++++|..+ ++..+..+++. .. +..+++|..
T Consensus       101 v~~~D~P~~~~~~i~~l~~~-~~-~~~~~~~~~  131 (199)
T 2waw_A          101 LMLGDQPGITASAVASLIAG-GR-GATIAVCEY  131 (199)
T ss_dssp             EEETTCTTCCHHHHHHHHHH-HT-TCSEEEEEE
T ss_pred             EEeCCcccCCHHHHHHHHhh-cC-CCCEEEEec
Confidence            99999985 78889999887 43 334555543

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=86.96  E-value=1.6  Score=38.54  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc--CCcEEEEEcCCCCCHHHHHHHHHhhcC------
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF--NGKVRLIRNTEREGLIRTRSRGAKESR------  354 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~v~~i~~~~~~g~~~a~n~g~~~a~------  354 (439)
                      ..|..+|+.+.+....+   +|+||-+.....    .+++..+.+  +..+.++..  ..+...+.-.|++...      
T Consensus        33 pll~~~l~~~~~~~~~~---~ivvv~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~l~~~~~~~  103 (246)
T 3f1c_A           33 PIIVHTVEKFILNTRFD---KILISSPKEWMN----HAEDNIKKYISDDRIVVIEG--GEDRNETIMNGIRFVEKTYGLT  103 (246)
T ss_dssp             EHHHHHHHHHHTCTTCS---EEEEEECGGGHH----HHHHHHHHHCCCTTEEEEEC--CSSHHHHHHHHHHHHHHHTCCC
T ss_pred             eHHHHHHHHHHcCCCCC---EEEEEeCHHHHH----HHHHHHHHhCCCCCEEEECC--CCchHHHHHHHHHHHhhhhcCC
Confidence            68888999887653222   777776543211    233333332  224666643  2345666666776543      


Q ss_pred             -CCEEEEEcCCCc-cCCCChHHHHHhhhcCCC-EEEEeeee
Q psy8674         355 -GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRK-IMTVPVID  392 (439)
Q Consensus       355 -~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~-~~v~~~~~  392 (439)
                       .++++++|+|.- +++..+..+++.+...+. ..+.|..+
T Consensus       104 ~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~~~~d  144 (246)
T 3f1c_A          104 DDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALD  144 (246)
T ss_dssp             TTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSS
T ss_pred             CCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEeccc
Confidence             589999999985 578999999998877654 33445443

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=86.74  E-value=4.6  Score=39.04  Aligned_cols=62  Identities=18%  Similarity=0.158  Sum_probs=46.1

Q ss_pred             HHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccC-cEEEEecCCc-ccCCCchHHHHHHHhc
Q psy8674           4 KKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRG-EVIVFLDAHC-EVGLNWLPPLLAPIYS   67 (439)
Q Consensus         4 ~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g-~~i~flD~D~-~~~~~~l~~l~~~~~~   67 (439)
                      +.++++++..  .++++..++..|.+.+.-.|++.... +.++++++|. .+++..++.+++.+.+
T Consensus        63 ~~i~~~~~~~--~~~~v~~~~~~g~~~~i~~~~~~~~~~~~~lv~~~D~P~i~~~~i~~l~~~~~~  126 (459)
T 4fce_A           63 ELLKKTLADP--SLNWVLQAEQLGTGHAMQQAAPHFADDEDILMLYGDVPLISVDTLQRLLAAKPE  126 (459)
T ss_dssp             HHHHHHC-------CEEECSSCCCHHHHHHHHGGGSCTTSEEEEEETTCTTCCHHHHHHHHHHCCT
T ss_pred             HHHHHHhccC--CcEEEeCCCCCCcHHHHHHHHHhcCCCCcEEEEeCCcccCCHHHHHHHHHHHhh
Confidence            4455555544  47788777788998898899888764 8999999999 4688899999988765

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=86.41  E-value=1  Score=38.74  Aligned_cols=94  Identities=11%  Similarity=0.046  Sum_probs=63.9

Q ss_pred             CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC-CCCCHHHHHHHHHhhcCCCE
Q psy8674         279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT-EREGLIRTRSRGAKESRGEV  357 (439)
Q Consensus       279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~g~~~a~n~g~~~a~~d~  357 (439)
                      +.. ..|..+++.+...       +|+||-+.  ++    .++.+...+  .+.++... ...|...+...|++.+ .++
T Consensus        24 ~G~-pli~~~~~~l~~~-------~vvvv~~~--~~----~~~~~~~~~--~~~~v~d~~~~~G~~~si~~gl~~~-~~~   86 (208)
T 3ngw_A           24 CGK-KLIEWVLEKYSPF-------QTVFVCRD--EK----QAEKLSSRY--EAEFIWDLHKGVGSIAGIHAALRHF-GSC   86 (208)
T ss_dssp             TTE-EHHHHHHHHHTTS-------EEEEECSS--HH----HHHHHHTTS--CSCEECCTTCCCSHHHHHHHHHHHH-SSE
T ss_pred             CCe-eHHHHHHHHhcCC-------CEEEEECC--HH----HHHHHHHhc--CCeEEecCCCCCChHHHHHHHHHHc-CCC
Confidence            445 6888888887653       67777532  22    333443333  35555432 3457778999999988 899


Q ss_pred             EEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEee
Q psy8674         358 IVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       358 i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                      + ++.+|.-+ +++.+..+++.+...+..+++|.
T Consensus        87 v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~  119 (208)
T 3ngw_A           87 V-VAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK  119 (208)
T ss_dssp             E-EEETTCTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             E-EEECCccCCCHHHHHHHHHHhhcCCCCEEEEc
Confidence            9 99999964 89999999998875444555565

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=86.37  E-value=1.1  Score=38.10  Aligned_cols=93  Identities=13%  Similarity=0.157  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC-CCCHHHHHHHHHhhcCC-CEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE-REGLIRTRSRGAKESRG-EVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~g~~~a~n~g~~~a~~-d~i~~  360 (439)
                      ..|..+++.+...       +|+||-+.. .   + .+.++..   ..+ ++..+. ..|...+...|++.... +++++
T Consensus        29 pll~~~l~~l~~~-------~ivvv~~~~-~---~-~~~~~~~---~~~-~v~~~~~~~G~~~si~~al~~~~~~~~vlv   92 (197)
T 3d5n_A           29 PIIMRTIRIYGDL-------EKIIIVGKY-V---N-EMLPLLM---DQI-VIYNPFWNEGISTSLKLGLRFFKDYDAVLV   92 (197)
T ss_dssp             BHHHHHHHHTTTS-------BCCEEECTT-H---H-HHGGGCT---TSC-EEECTTGGGCHHHHHHHHHHHTTTSSEEEE
T ss_pred             EHHHHHHHHHHhC-------CEEEEECCC-H---H-HHHHHhc---CCE-EEECCCCCCCHHHHHHHHHHhhccCCcEEE
Confidence            6788888877643       445554332 1   1 2222222   135 554433 35888888889988765 89999


Q ss_pred             EcCCCc-cCCCChHHHHHhhhcCCCEEEEeeee
Q psy8674         361 LDAHCE-VGLNWLPPLLAPIYSDRKIMTVPVID  392 (439)
Q Consensus       361 ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~  392 (439)
                      +++|.- ++++.+..+++.+ .....+++|..+
T Consensus        93 ~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~~  124 (197)
T 3d5n_A           93 ALGDMPFVTKEDVNKIINTF-KPNCKAVIPTHK  124 (197)
T ss_dssp             EETTCCCSCHHHHHHHHHTC-CTTCSEEEEEET
T ss_pred             EeCCccccCHHHHHHHHHHh-cCCCcEEEEEeC
Confidence            999995 5788899999887 445556666543

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=86.08  E-value=2.7  Score=36.39  Aligned_cols=86  Identities=10%  Similarity=0.146  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC--CCCCHHHHHHHHHhhcCCCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--EREGLIRTRSRGAKESRGEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~g~~~a~n~g~~~a~~d~i~~  360 (439)
                      ..|..+|+.+.+. . +   +|+|+-+.   +    .+.++...+   +.++..+  ...|.+.+. .+++....+++++
T Consensus        28 pli~~~l~~~~~~-~-~---~i~v~~~~---~----~i~~~~~~~---~~~~~~~~~~~~g~~~~~-~~~~~~~~~~vlv   91 (234)
T 2y6p_A           28 PLIRWVVEGLVKT-G-E---RVILATDS---E----RVKEVVEDL---CEVFLTPSDLPSGSDRVL-YVVRDLDVDLIIN   91 (234)
T ss_dssp             EHHHHHHHHHHTT-T-S---CEEEEESC---H----HHHHHHTTT---SEEEECCTTCCSHHHHHH-HHHTTCCCSEEEE
T ss_pred             EHHHHHHHHHHHh-C-C---EEEEECCh---H----HHHHHHHhc---eEEEECCcccccchHHHH-HHHHhCCCCEEEE
Confidence            6888889888765 2 2   67776543   2    223333332   3334332  245666655 4667667899999


Q ss_pred             EcCCC-ccCCCChHHHHHhhhcCCC
Q psy8674         361 LDAHC-EVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       361 ld~D~-~~~~~~l~~l~~~~~~~~~  384 (439)
                      +++|. .+++..+..+++.+...+.
T Consensus        92 ~~~D~P~~~~~~i~~l~~~~~~~~~  116 (234)
T 2y6p_A           92 YQGDEPFVYEEDIKLIFRELEKGER  116 (234)
T ss_dssp             CCTTCCCCCHHHHHHHHHHHHHTCS
T ss_pred             ecCCcCcCCHHHHHHHHHHHHhCCC
Confidence            99999 5677899999998865544

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=86.02  E-value=3.2  Score=36.76  Aligned_cols=88  Identities=11%  Similarity=0.136  Sum_probs=54.8

Q ss_pred             hHHHHHH-HHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc---CCCEE
Q psy8674         283 SSLMRTV-HSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES---RGEVI  358 (439)
Q Consensus       283 ~~l~~~l-~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a---~~d~i  358 (439)
                      ..|..++ +.+.+.. .   .+|+|+-+.   +    .+.++...++..+.+.......|. .+...|++..   ..+++
T Consensus        27 Pli~~~i~~~~~~~~-~---~~vvVvt~~---~----~i~~~~~~~g~~v~~~~~~~~~Gt-~~i~~a~~~~~~~~~d~v   94 (253)
T 4fcu_A           27 PMILRVVDQAKKVEG-F---DDLCVATDD---E----RIAEICRAEGVDVVLTSADHPSGT-DRLSEVARIKGWDADDII   94 (253)
T ss_dssp             EHHHHHHHHHHTCTT-C---CEEEEEESC---H----HHHHHHHTTTCCEEECCTTCCCHH-HHHHHHHHHHTCCTTCEE
T ss_pred             EhHHHHHHHHHHhcC-C---CEEEEECCH---H----HHHHHHHHcCCeEEEeCCCCCChH-HHHHHHHHhcCcCCCCEE
Confidence            5888888 8876532 1   278877642   2    333444444433322222233443 3445555554   46899


Q ss_pred             EEEcCCCc-cCCCChHHHHHhhhcC
Q psy8674         359 VFLDAHCE-VGLNWLPPLLAPIYSD  382 (439)
Q Consensus       359 ~~ld~D~~-~~~~~l~~l~~~~~~~  382 (439)
                      +++++|.- +++..|..+++.+.+.
T Consensus        95 lv~~gD~Pli~~~~i~~li~~~~~~  119 (253)
T 4fcu_A           95 VNVQGDEPLLPAQLVQQVAKLLVDK  119 (253)
T ss_dssp             EECCTTCTTCCHHHHHHHHHHHHHC
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHhC
Confidence            99999995 5789999999998765

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=85.77  E-value=3.7  Score=35.79  Aligned_cols=103  Identities=10%  Similarity=0.164  Sum_probs=64.4

Q ss_pred             CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC----
Q psy8674         279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR----  354 (439)
Q Consensus       279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~----  354 (439)
                      +.. ..|..+++.+.+....+   +|+||-+...   .+ .++++...   .+.++...  .+...+.-.|++...    
T Consensus        33 ~Gk-pll~~~l~~~~~~~~~~---~ivVv~~~~~---~~-~~~~~~~~---~v~~v~gg--~~r~~sv~~gl~~~~~~~~   99 (231)
T 3q80_A           33 DGQ-TLIERAVDGLLDSGVVD---TVVVAVPADR---TD-EARQILGH---RAMIVAGG--SNRTDTVNLALTVLSGTAE   99 (231)
T ss_dssp             TTE-EHHHHHHHHHHHTSCCC---EEEEEECGGG---HH-HHHHHHGG---GCEEEECC--SSHHHHHHHHHGGGC---C
T ss_pred             CCe-EHHHHHHHHHHhCCCCC---eEEEECChHH---HH-HHHHHhcC---CeEEEcCC--CchHHHHHHHHHHhhhcCC
Confidence            344 68889999887643222   7877765432   12 33333322   45666432  234566777887765    


Q ss_pred             CCEEEEEcCCCcc-CCCChHHHHHhhhcC-CC-EEEEeeeeee
Q psy8674         355 GEVIVFLDAHCEV-GLNWLPPLLAPIYSD-RK-IMTVPVIDGI  394 (439)
Q Consensus       355 ~d~i~~ld~D~~~-~~~~l~~l~~~~~~~-~~-~~v~~~~~~~  394 (439)
                      .++++++|+|.-+ +++.|..+++.+..+ +. ..++|.-+.+
T Consensus       100 ~d~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~~p~~dt~  142 (231)
T 3q80_A          100 PEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTI  142 (231)
T ss_dssp             CSEEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEEECCSSCE
T ss_pred             CCEEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEEEeccCCE
Confidence            4899999999875 799999999998773 33 2334554443

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=85.67  E-value=3.6  Score=37.35  Aligned_cols=97  Identities=12%  Similarity=0.079  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHH---HHH---------------H---cCCcEEEEEcCCCCC
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED---YIQ---------------R---FNGKVRLIRNTEREG  341 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~---~~~---------------~---~~~~v~~i~~~~~~g  341 (439)
                      ..|..+|+.+.....    .+|+||-+... ..+.+.+..   +..               .   .+..+.++..+...|
T Consensus        40 pli~~~l~~l~~~gi----~~i~vv~~~~~-~~i~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~G  114 (302)
T 2e3d_A           40 PLIQYVVNECIAAGI----TEIVLVTHSSK-NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKG  114 (302)
T ss_dssp             EHHHHHHHHHHHTTC----CEEEEEECGGG-HHHHHHHSCCHHHHHHHC----CHHHHHHHHTSCTTCEEEEEECSSCCC
T ss_pred             EHHHHHHHHHHHCCC----CEEEEEeCCCH-HHHHHHHhcchhhhhhhhhccchhhhhhhhhccccCcceEEeeCCccCC
Confidence            688888988876532    17777754322 222212211   000               0   122466666677789


Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCCCccC----CC---ChHHHHHhhhcCCC
Q psy8674         342 LIRTRSRGAKESRGEVIVFLDAHCEVG----LN---WLPPLLAPIYSDRK  384 (439)
Q Consensus       342 ~~~a~n~g~~~a~~d~i~~ld~D~~~~----~~---~l~~l~~~~~~~~~  384 (439)
                      .+.+...++.....+.++++.+|..+.    +.   .+..+++.......
T Consensus       115 t~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~  164 (302)
T 2e3d_A          115 LGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH  164 (302)
T ss_dssp             HHHHHHHTHHHHCSSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC
Confidence            999999888877667899999999986    45   79999987765443

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=85.46  E-value=6.4  Score=33.83  Aligned_cols=93  Identities=12%  Similarity=0.018  Sum_probs=59.9

Q ss_pred             CChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc------
Q psy8674         280 EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES------  353 (439)
Q Consensus       280 ~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a------  353 (439)
                      .. ..|..+++.+......+   +|+||-+... ....    ++.......+.++  ....|.+.+.-.|+...      
T Consensus        33 gk-pli~~~l~~l~~~~~~~---~ivvv~~~~~-~~~~----~~~~~~~~~i~~~--~~~~~~~~si~~~l~~~~~~~~~  101 (231)
T 1vgw_A           33 SK-TVLEHVLGIFERHEAVD---LTVVVVSPED-TFAD----KVQTAFPQVRVWK--NGGQTRAETVRNGVAKLLETGLA  101 (231)
T ss_dssp             TE-EHHHHHHHHHHTCTTCC---EEEEECCTTC-STHH----HHHHHCTTSEEEC--CCCSSHHHHHHHHHHHHHHHSSS
T ss_pred             Ce-EHHHHHHHHHHcCCCCC---eEEEEECccH-HHHH----HHHhcCCCceEEE--cCCCcHHHHHHHHHHHHhhhccC
Confidence            44 68888999887643222   7777754332 2233    2222111246554  34567778888787765      


Q ss_pred             -CCCEEEEEcCCCc-cCCCChHHHHHhhhcCC
Q psy8674         354 -RGEVIVFLDAHCE-VGLNWLPPLLAPIYSDR  383 (439)
Q Consensus       354 -~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~  383 (439)
                       ..+.++++++|.. ++++.+..+++.+....
T Consensus       102 ~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~  133 (231)
T 1vgw_A          102 AETDNILVHDAARCCLPSEALARLIEQAGNAA  133 (231)
T ss_dssp             CTTSEEEECCTTCTTCCHHHHHHHHHHHTTCT
T ss_pred             CCCCEEEEEcCCcccCCHHHHHHHHHHHhhcC
Confidence             4689999999986 47888999999886654

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=85.18  E-value=2.1  Score=41.58  Aligned_cols=90  Identities=17%  Similarity=0.164  Sum_probs=62.2

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC-CCEEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR-GEVIVFL  361 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~-~d~i~~l  361 (439)
                      ..|..+|+.+.+... .   +|+||-+.. ++    .++++....  .+.++..+...|.+.+...|++... .++++++
T Consensus        37 pli~~~l~~l~~~~~-~---~i~vv~~~~-~~----~i~~~~~~~--~~~~v~~~~~~g~~~~i~~~~~~~~~~~~~lv~  105 (459)
T 4fce_A           37 PMVQHVIDAAMKLGA-Q---HVHLVYGHG-GE----LLKKTLADP--SLNWVLQAEQLGTGHAMQQAAPHFADDEDILML  105 (459)
T ss_dssp             EHHHHHHHHHHHHTC-S---CEEEEESSC-HH----HHHHHC-------CEEECSSCCCHHHHHHHHGGGSCTTSEEEEE
T ss_pred             eHHHHHHHHHHhCCC-C---cEEEEeCCC-HH----HHHHHhccC--CcEEEeCCCCCCcHHHHHHHHHhcCCCCcEEEE
Confidence            688888998887642 1   677775433 22    333333332  4667767777888999999998876 4899999


Q ss_pred             cCCCc-cCCCChHHHHHhhhcCC
Q psy8674         362 DAHCE-VGLNWLPPLLAPIYSDR  383 (439)
Q Consensus       362 d~D~~-~~~~~l~~l~~~~~~~~  383 (439)
                      ++|.- +++..+..+++.+.+..
T Consensus       106 ~~D~P~i~~~~i~~l~~~~~~~~  128 (459)
T 4fce_A          106 YGDVPLISVDTLQRLLAAKPEGG  128 (459)
T ss_dssp             ETTCTTCCHHHHHHHHHHCCTTS
T ss_pred             eCCcccCCHHHHHHHHHHHhhCC
Confidence            99984 67888999998886643

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*

Probab=84.92  E-value=4.7  Score=36.87  Aligned_cols=113  Identities=14%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             EEEEecCCChhHHHHHHHHH-HhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC--------CC--
Q psy8674         273 VILVFHNEGFSSLMRTVHSI-IKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER--------EG--  341 (439)
Q Consensus       273 iiip~~n~~~~~l~~~l~sl-~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~--------~g--  341 (439)
                      |++.+-+.-...+..++.|| +..+..++  .++|+.++-+++..+ .++++...++..+.++..+..        .+  
T Consensus         3 I~~~~d~~Y~~~~~vli~Sl~l~~~~~~~--~f~il~~~ls~~~~~-~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   79 (311)
T 1g9r_A            3 IVFAADDNYAAYLCVAAKSVEAAHPDTEI--RFHVLDAGISEANRA-AVAANLRGGGGNIRFIDVNPEDFAGFPLNIRHI   79 (311)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHTCTTSCC--EEEEEESSCCHHHHH-HHHHHSGGGTTTEEEEECCGGGGTTSCCCCTTC
T ss_pred             EEEECCHhHHHHHHHHHHHHHHHcCCCCc--eEEEEECCCCHHHHH-HHHHHHHHcCCEEEEEEcCHHHHhcCccccccC
Confidence            44444332236778889999 76654444  888888887766655 777766555556777653211        11  


Q ss_pred             --HHHHHHHHHhh-cCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEe
Q psy8674         342 --LIRTRSRGAKE-SRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP  389 (439)
Q Consensus       342 --~~~a~n~g~~~-a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~  389 (439)
                        .+..+-..... ..-+-+++||+|..+..+ |.+|.+.=..+...++++
T Consensus        80 s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~d-i~eL~~~~l~~~~~aav~  129 (311)
T 1g9r_A           80 SITTYARLKLGEYIADCDKVLYLDIDVLVRDS-LTPLWDTDLGDNWLGASI  129 (311)
T ss_dssp             CGGGGGGGGHHHHCCSCSCEEEECSSEEECSC-CHHHHTCCCTTCSEEEEE
T ss_pred             CHHHHHHHHHHHHhhhcCEEEEEcCCeEeccC-HHHHhccCCCCcEEEEEe
Confidence              11112222222 246889999999998655 666665422233444444

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=84.90  E-value=5.9  Score=36.11  Aligned_cols=89  Identities=9%  Similarity=0.031  Sum_probs=58.8

Q ss_pred             CChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHH-cCC-cEEEEEcCCCCCHHHHHHHHHhhcC-CC
Q psy8674         280 EGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQR-FNG-KVRLIRNTEREGLIRTRSRGAKESR-GE  356 (439)
Q Consensus       280 ~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~-~v~~i~~~~~~g~~~a~n~g~~~a~-~d  356 (439)
                      .. ..|..+|+.+.+. . .   +|+||-+...   .+ .+.+.... ++. .+.++..+...|.+.+.-.+..... .+
T Consensus        36 g~-pli~~~l~~l~~~-~-~---~i~vv~~~~~---~~-~i~~~~~~~~~~~~~~~i~~~~~~gt~~al~~a~~~l~~~~  105 (308)
T 2qh5_A           36 HK-SLFELSFKRNASL-V-D---ETLIVCNEKH---YF-LALEEIKNEIKNKSVGFLLESLSKNTANAIALSALMSDKED  105 (308)
T ss_dssp             TB-CHHHHHHHHHHTT-C-S---EEEEEEEGGG---HH-HHHHHTTTTCSSCEEEEEEESSCCCHHHHHHHHHHTSCTTS
T ss_pred             CC-CHHHHHHHHHHcc-C-C---CEEEEEChhH---HH-HHHHHHHHhhCCCccEEEeCCCCCChHHHHHHHHHHhCCCC
Confidence            44 6888888888765 2 2   6766654321   11 33333333 332 4566666777899999888887765 45


Q ss_pred             EEEEEcCCCcc-CCCChHHHHHh
Q psy8674         357 VIVFLDAHCEV-GLNWLPPLLAP  378 (439)
Q Consensus       357 ~i~~ld~D~~~-~~~~l~~l~~~  378 (439)
                      +++++.+|..+ +++.+..+++.
T Consensus       106 ~~lv~~~D~~~~~~~~~~~~~~~  128 (308)
T 2qh5_A          106 LLIVTPSDHLIKDLQAYENAIKK  128 (308)
T ss_dssp             EEEEEESSCBCCCHHHHHHHHHH
T ss_pred             eEEEEcCCccccCHHHHHHHHHH
Confidence            89999999987 56668888875

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=84.87  E-value=2.1  Score=40.41  Aligned_cols=87  Identities=9%  Similarity=0.146  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEc
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLD  362 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld  362 (439)
                      ..|..+++.+.+....+   +|+||-+  ..+    .++++.   . .+.++.  ...|...+...|++....+++++++
T Consensus        32 PLi~~~l~~l~~~~~~~---~IvVvt~--~~~----~i~~~~---~-~v~~v~--~g~g~~~sv~~aL~~l~~d~vlv~~   96 (371)
T 1w55_A           32 PLWLYATKNLSSFYPFK---KIVVTSS--NIT----YMKKFT---K-NYEFIE--GGDTRAESLKKALELIDSEFVMVSD   96 (371)
T ss_dssp             EHHHHHHHHHHTTSCCS---CEEEEES--CHH----HHHTTC---S-SSEEEE--CCSSHHHHHHHHHTTCCSSEEEEEE
T ss_pred             EHHHHHHHHHHccCCCC---eEEEEcC--CHH----HHHHHh---C-CCEEEe--CCCChHHHHHHHHHhcCCCeEEEEe
Confidence            68888888887532222   7777766  221    223221   1 255552  3456778888888887789999999


Q ss_pred             CCCc-cCCCChHHHHHhhhcCCC
Q psy8674         363 AHCE-VGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       363 ~D~~-~~~~~l~~l~~~~~~~~~  384 (439)
                      +|.- ++++.+..+++.+.+.+.
T Consensus        97 ~D~Pli~~~~i~~li~~~~~~~a  119 (371)
T 1w55_A           97 VARVLVSKNLFDRLIENLDKADC  119 (371)
T ss_dssp             TTCTTCCHHHHHHHHTTGGGCSE
T ss_pred             CCcccCCHHHHHHHHHHHHhcCC
Confidence            9986 578899999988876543

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=83.98  E-value=4.3  Score=35.03  Aligned_cols=99  Identities=9%  Similarity=0.086  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcC----CcEEEEEcCCCCCHHHHHHHHHhhc-----
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFN----GKVRLIRNTEREGLIRTRSRGAKES-----  353 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~----~~v~~i~~~~~~g~~~a~n~g~~~a-----  353 (439)
                      ..|..+|+.+.+....+   +|+||-+....+    .++.+...++    ....+.  +...|...+.-.|+...     
T Consensus        32 pli~~~l~~l~~~~~~~---~i~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~l~~~~~~~~  102 (236)
T 2vsh_A           32 PILIHTIEKFVLEPSIE---KIVVGVHGDWVS----HAEDLVDKYLPLYKERIIIT--KGGADRNTSIKNIIEAIDAYRP  102 (236)
T ss_dssp             EHHHHHHHHHHTCTTCC---CEEEEECGGGHH----HHHHHHHHHCGGGGGGEEEE--ECCSSHHHHHHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHcCCCCC---eEEEEeCHHHHH----HHHHHHHhccccccCceEEE--CCCCchHHHHHHHHHHHHhhcc
Confidence            68888898887643222   677775533212    2333333322    123333  22346677777777765     


Q ss_pred             --CCCEEEEEcCCC-ccCCCChHHHHHhhhcCCC-EEEEee
Q psy8674         354 --RGEVIVFLDAHC-EVGLNWLPPLLAPIYSDRK-IMTVPV  390 (439)
Q Consensus       354 --~~d~i~~ld~D~-~~~~~~l~~l~~~~~~~~~-~~v~~~  390 (439)
                        ..++++++++|. .+++..+..+++.+...+. .+++|.
T Consensus       103 ~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~  143 (236)
T 2vsh_A          103 LTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVEA  143 (236)
T ss_dssp             CCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred             CCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCcEEEEEec
Confidence              348999999999 5678899999998876543 334444

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=83.66  E-value=5.8  Score=36.10  Aligned_cols=93  Identities=15%  Similarity=0.095  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC---------------CCCCHHHHHH
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT---------------EREGLIRTRS  347 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~---------------~~~g~~~a~n  347 (439)
                      ..|..+|+.+.+...    .+|+||-+....+.+.+.+.... .....+.++..+               +..|.+.+..
T Consensus        34 pli~~~l~~~~~~~~----~~i~vv~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~  108 (303)
T 3pnn_A           34 TIMDYSVYDAIRAGF----GRLVFVIRHSFEKEFREKILTKY-EGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVL  108 (303)
T ss_dssp             CHHHHHHHHHHHHTC----CEEEEEECGGGHHHHHHHTHHHH-TTTSCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHH
T ss_pred             eHHHHHHHHHHHCCC----CeEEEEcCchHHHHHHHHHHHHh-ccCCcEEEEecccccccccccccccccccCCcHHHHH
Confidence            688888888876532    27777765332222222222211 112347776555               4688999999


Q ss_pred             HHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhc
Q psy8674         348 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYS  381 (439)
Q Consensus       348 ~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~  381 (439)
                      .+......+ ++++.+|..+..+.+..|++...+
T Consensus       109 ~a~~~i~~~-~lV~~gD~l~~~~~~~~l~~~~~~  141 (303)
T 3pnn_A          109 MGRDAIREP-FAVINADDFYGRNGFEVLARKLMT  141 (303)
T ss_dssp             TTTTTCCSC-EEEEESSCBCCHHHHHHHHHHHHT
T ss_pred             HHHHhcCCC-EEEEECCeecCHHHHHHHHHHHHH
Confidence            888877544 566789998877778999988764

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=82.82  E-value=5  Score=34.30  Aligned_cols=90  Identities=8%  Similarity=0.061  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc-CCCEEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES-RGEVIVFL  361 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a-~~d~i~~l  361 (439)
                      ..|..+++.+......+   +|+||-+....   + .+..+..  ...+.++..  ..+.+.+...|++.. ..++++++
T Consensus        31 pli~~~l~~l~~~~~~~---~i~vv~~~~~~---~-~~~~~~~--~~~v~~~~~--~~~~~~~i~~al~~~~~~~~vlv~   99 (223)
T 2xwl_A           31 PLLEHALSGLRASGVID---RIVIAVPPALT---D-ESKLVFG--GEDSVIVSG--GVDRTESVALALEAAGDAEFVLVH   99 (223)
T ss_dssp             EHHHHHHHHHHHHSCCS---EEEEEECGGGH---H-HHHHHTC--BTTEEEEEC--CSSHHHHHHHHHTTCTTCSEEEEC
T ss_pred             EHHHHHHHHHhcCCCCC---eEEEEEcccHH---H-HHHHHhc--cCCeEEEcC--CCCHHHHHHHHHHhcCCCCEEEEE
Confidence            68888888887643222   77777553221   1 2333321  125766643  245677888888887 67899999


Q ss_pred             cCCCc-cCCCChHHHHHhh-hcCC
Q psy8674         362 DAHCE-VGLNWLPPLLAPI-YSDR  383 (439)
Q Consensus       362 d~D~~-~~~~~l~~l~~~~-~~~~  383 (439)
                      ++|.. +++..+..+++.+ ...+
T Consensus       100 ~~D~P~~~~~~i~~l~~~~~~~~~  123 (223)
T 2xwl_A          100 DAARALTPPALIARVVAALKEGHS  123 (223)
T ss_dssp             CTTCTTCCHHHHHHHHHHHHHTCS
T ss_pred             cCCcccCCHHHHHHHHHHHhhcCC
Confidence            99985 5788899999987 4443

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=81.87  E-value=18  Score=34.87  Aligned_cols=58  Identities=9%  Similarity=0.063  Sum_probs=45.6

Q ss_pred             cEEEEEecCCCChhHHHHhhhhhcc--CcEEEEecCCcc-cCCCchHHHHHHHhcCCCeEe
Q psy8674          16 KVRLIRNTEREGLIRTRSRGAKESR--GEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMT   73 (439)
Q Consensus        16 ~i~~i~~~~n~G~a~arN~G~~~A~--g~~i~flD~D~~-~~~~~l~~l~~~~~~~~~~~v   73 (439)
                      .++++..++..|.+.+.-.|++..+  .+.++++++|.. +.+..++.+++.+.+....++
T Consensus        75 ~i~~v~~~~~~G~~~sl~~a~~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~  135 (468)
T 1hm9_A           75 QTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVAT  135 (468)
T ss_dssp             SSEEEECSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEE
T ss_pred             CcEEEeCCccCChHHHHHHHHHHhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEE
Confidence            4777776777798888888887765  689999999996 688889999998876554433

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=81.85  E-value=4.9  Score=36.97  Aligned_cols=97  Identities=7%  Similarity=-0.052  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHH------HHH------------H--cCCcEEEEEcCCCCCH
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLED------YIQ------------R--FNGKVRLIRNTEREGL  342 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~------~~~------------~--~~~~v~~i~~~~~~g~  342 (439)
                      ..|..+|+.+.....    .+|+||-+...+ .+.+.+..      +..            .  .+..+.++..+...|.
T Consensus        44 pli~~~l~~l~~~gi----~~iivv~~~~~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~Gt  118 (323)
T 2pa4_A           44 PGIELIAAEAAELGA----TRLAIITAPNKA-GVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGL  118 (323)
T ss_dssp             EHHHHHHHHHHHTTC----CEEEEEECTTCH-HHHHTTSCCHHHHHHHHHTTCHHHHHHTTHHHHHCEEEEEECSSCCCH
T ss_pred             EHHHHHHHHHHhCCC----CEEEEEecCcHH-HHHHHHhccchhhhhhhccchhhhhhhhhccccCcceEEEeCCccCCc
Confidence            688888888876432    167766554322 11111110      000            0  1124666666677899


Q ss_pred             HHHHHHHHhhcCC--CEEEEEcCCCccC-CCChHHHHHhhhcCCC
Q psy8674         343 IRTRSRGAKESRG--EVIVFLDAHCEVG-LNWLPPLLAPIYSDRK  384 (439)
Q Consensus       343 ~~a~n~g~~~a~~--d~i~~ld~D~~~~-~~~l~~l~~~~~~~~~  384 (439)
                      +.+...|+.....  ++++++.+|..+. +..+..+++.+.....
T Consensus       119 ~~al~~a~~~l~~~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~  163 (323)
T 2pa4_A          119 GHAVGLAESVLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG  163 (323)
T ss_dssp             HHHHHTTGGGSCSSCCEEEEECTTEEEESSCHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeCCcccCchHHHHHHHHHHHhcCC
Confidence            9999988877643  4589999999996 6889999988876554

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=81.13  E-value=2.7  Score=36.25  Aligned_cols=93  Identities=14%  Similarity=0.123  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC--CCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~--~d~i~~  360 (439)
                      ..|..+++.+.+....   .+|+||-+...+   + +.+.+...+...+.++.  ...|...+.-.|++...  .+++++
T Consensus        33 pli~~~l~~l~~~~~~---~~ivvv~~~~~~---~-~~~~~~~~~~~~v~~~~--~~~~~~~sv~~al~~~~~~~~~vl~  103 (228)
T 2yc3_A           33 PIALYSFFTFSRMPEV---KEIVVVCDPFFR---D-IFEEYEESIDVDLSFAI--PGKERQDSVYSGLQEIDVNSELVCI  103 (228)
T ss_dssp             EHHHHHHHHHHHCTTE---EEEEEECCGGGH---H-HHHTTTTTSSSEEEEEC--CCSSHHHHHHHHHTTSCTTCSEEEE
T ss_pred             EHHHHHHHHHHcCCCC---CeEEEEEChHHH---H-HHHHHHHhCCCcEEEEC--CCCCHHHHHHHHHHhhccCCCEEEE
Confidence            6888888888764221   267777443211   1 33333222222355553  23577788888887765  489999


Q ss_pred             EcCCC-ccCCCChHHHHHhhhcCCC
Q psy8674         361 LDAHC-EVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       361 ld~D~-~~~~~~l~~l~~~~~~~~~  384 (439)
                      +|+|. .+++..+..+++.+...+.
T Consensus       104 ~d~d~P~~~~~~i~~l~~~~~~~~~  128 (228)
T 2yc3_A          104 HDSARPLVNTEDVEKVLKDGSAVGA  128 (228)
T ss_dssp             EETTCTTCCHHHHHHHHHHHHHHSE
T ss_pred             ecCCCccCCHHHHHHHHHHHHhcCc
Confidence            99997 4578889999988765443

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=80.70  E-value=1.7  Score=39.07  Aligned_cols=55  Identities=13%  Similarity=-0.008  Sum_probs=45.0

Q ss_pred             cEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCC----chHHHHHHHhcCCC
Q psy8674          16 KVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLN----WLPPLLAPIYSDRK   70 (439)
Q Consensus        16 ~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~----~l~~l~~~~~~~~~   70 (439)
                      .|.++..++..|.+.|.-.|+.....+.++++++|+.+.++    .+..+++.+.+...
T Consensus        96 ~i~~~~~~~~~Gt~~al~~a~~~l~~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~  154 (281)
T 3juk_A           96 CFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC  154 (281)
T ss_dssp             EEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS
T ss_pred             cEEEEecCCCCCcHHHHHHHHHHcCCCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC
Confidence            57777767778999998888887767889999999988888    79999998876444

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=80.19  E-value=3.5  Score=40.04  Aligned_cols=90  Identities=12%  Similarity=0.106  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcC--CCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESR--GEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~--~d~i~~  360 (439)
                      ..|..+|+.+.+...    .+|+||-+.. .+    .+.++...   .+.++..+...|.+.+.-.|++...  .+.+++
T Consensus        40 pli~~~l~~l~~~g~----~~iivv~~~~-~~----~i~~~~~~---~i~~v~~~~~~G~~~sl~~a~~~~~~~~~~vlv  107 (468)
T 1hm9_A           40 SMLEHVFRSVGAIQP----EKTVTVVGHK-AE----LVEEVLAG---QTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLV  107 (468)
T ss_dssp             EHHHHHHHHHHTTCC----SEEEEEECTT-HH----HHHHSSSS---SSEEEECSSCCCHHHHHHTTHHHHTTCCSEEEE
T ss_pred             cHHHHHHHHHHhcCC----CCEEEEECCC-HH----HHHHHhCC---CcEEEeCCccCChHHHHHHHHHHhccCCCeEEE
Confidence            688889998876531    2777775432 11    22222211   4666766667789999888888765  689999


Q ss_pred             EcCCCc-cCCCChHHHHHhhhcCCC
Q psy8674         361 LDAHCE-VGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       361 ld~D~~-~~~~~l~~l~~~~~~~~~  384 (439)
                      +++|.. +.+..+..+++.+.+...
T Consensus       108 ~~~D~P~i~~~~i~~l~~~~~~~~~  132 (468)
T 1hm9_A          108 IAGDTPLITGESLKNLIDFHINHKN  132 (468)
T ss_dssp             EETTCTTCCHHHHHHHHHHHHHTTC
T ss_pred             EeCCccccCHHHHHHHHHHHHhcCC
Confidence            999996 578889999988765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	439
d1xhba2	328	c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosa	3e-33
d1xhba2	328	c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosa	4e-25
d2bo4a1	381	c.68.1.18 (A:2-382) Mannosylglycerate synthase, MG	5e-10
d2bo4a1	381	c.68.1.18 (A:2-382) Mannosylglycerate synthase, MG	4e-04
d1omza_	265	c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransf	2e-08

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 328

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (314), Expect = 3e-33
 Identities = 87/191 (45%), Positives = 123/191 (64%), Gaps = 3/191 (1%)

Query: 248 DRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILV 307
           +R++PD+R+E CK   YP +LP  SV++VFHNE +S+L+RTVHS+I R+P   +EEI+LV
Sbjct: 1   NRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLV 60

Query: 308 DDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEV 367
           DD S +  L + LE Y+++    V +IR  +R GLIR R +GA  SRG+VI FLDAHCE 
Sbjct: 61  DDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCEC 120

Query: 368 GLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELP 427
              WL PLLA I  DR+ +  P+ID I   T+E+           G F W + ++   +P
Sbjct: 121 TAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYM---AGSDMTYGGFNWKLNFRWYPVP 177

Query: 428 EREAKKRKYNR 438
           +RE  +RK +R
Sbjct: 178 QREMDRRKGDR 188

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 328

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 4e-25
 Identities = 82/183 (44%), Positives = 116/183 (63%), Gaps = 4/183 (2%)

Query: 7   EDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIY 66
           E Y+++    V +IR  +R GLIR R +GA  SRG+VI FLDAHCE    WL PLLA I 
Sbjct: 74  ESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIK 133

Query: 67  SDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYN-SE 125
            DR+ +  P+ID I   T+E+           G F W + ++   +P+RE  +RK + + 
Sbjct: 134 HDRRTVVCPIIDVISDDTFEYM---AGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTL 190

Query: 126 PYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVS 185
           P ++PT AGGLF++DR +F E+G YD G+ +WGGEN E+SF+IW CGG++E V CS +  
Sbjct: 191 PVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGH 250

Query: 186 LIR 188
           + R
Sbjct: 251 VFR 253

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} Length = 381

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

 Score = 58.4 bits (141), Expect = 5e-10
 Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 14/118 (11%)

Query: 273 VILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSS----------KADLDQKLED 322
           V+  F +E    L+  V  +    P   + E++ +                         
Sbjct: 3   VVFPFKHEHPEVLLHNV-RVAAAHP--RVHEVLCIGYERDQTYEAVERAAPEISRATGTP 59

Query: 323 YIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHC-EVGLNWLPPLLAPI 379
              R   ++  +R  + +G+        +E++ E I F DA     G +W+       
Sbjct: 60  VSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAA 117

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} Length = 381

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 24/208 (11%), Positives = 41/208 (19%), Gaps = 51/208 (24%)

Query: 10  IERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDR 69
             R   ++  +R  + +G+        +E++ E I F DA                    
Sbjct: 61  SVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFG 120

Query: 70  KIMTVPVID---------------------GIDY-------QTWEF---RSVYE---PDH 95
             +                                         E    R V      D 
Sbjct: 121 YGLVRHYFPRASTDAMITWMITRTGFALLWPHTELSWIEQPLGGELLMRREVAAMLYEDE 180

Query: 96  HYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLL 155
             R   +WG+   +        ++     E Y     A  L+         L        
Sbjct: 181 RVRRRSDWGI---DTLYTFVTVQQGVSIYECYIPEGKAHRLYGGLDDLRTML-------- 229

Query: 156 VWGGENFELSFKIWMCGGSIEWVPCSRI 183
                  E    I      +   P    
Sbjct: 230 ------VECFAAIQSLQHEVVGQPAIHR 251

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 8/154 (5%)

Query: 268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF 327
           L   ++I+  +N     L+R ++          L ++I+V +   +   ++         
Sbjct: 2   LDSFTLIMQTYNRT-DLLLRLLNHYQAVP---SLHKVIVVWNNVGEKGPEELWNSLGPHP 57

Query: 328 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMT 387
                +I   +    +R R +   E     ++ +D    +    L    + I+       
Sbjct: 58  I---PVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFS-IWQQFPDQI 113

Query: 388 VPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLY 421
           +  +      T      Y            G  Y
Sbjct: 114 IGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQY 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	439
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	99.97
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	99.97
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	99.86
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	99.78
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	99.61
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	99.21
d2bo4a1	381	Mannosylglycerate synthase, MGS {Rhodothermus mari	99.16
d1pzta_	271	beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos	98.84
d2bo4a1	381	Mannosylglycerate synthase, MGS {Rhodothermus mari	98.3
d1fo8a_	343	N-acetylglucosaminyltransferase I {Rabbit (Oryctol	97.91
d1pzta_	271	beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos	96.14
d1v82a_	252	Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (	95.01
d3cu0a1	261	1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo	93.46
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	92.96
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	91.97
d1fo8a_	343	N-acetylglucosaminyltransferase I {Rabbit (Oryctol	91.61
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	90.93
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	87.95
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	83.58
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	82.57

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.4e-31  Score=250.22  Aligned_cols=186  Identities=46%  Similarity=0.814  Sum_probs=169.3

Q ss_pred             CCCCCcccccccccccCCCCCCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHc
Q psy8674         248 DRTIPDLRMEECKYWDYPLDLPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRF  327 (439)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~  327 (439)
                      +|.+||.|+..|....++..+|.||||||+||+..+.|.+||+|+++|+++....|||||||||+|+|..+.++++.+..
T Consensus         1 ~~~~~~~r~~~~~~~~~~~~~P~vSIIIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~   80 (328)
T d1xhba2           1 NRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKL   80 (328)
T ss_dssp             CCCCCCCSCGGGGTCCCCSCCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSS
T ss_pred             CCCCCCCCChhhhhccCCCCCCCEEEEEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhc
Confidence            47899999999999999999999999999999873579999999999998876679999999999998876888888887


Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEEeeeeeecCCCceEEeecCC
Q psy8674         328 NGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEP  407 (439)
Q Consensus       328 ~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  407 (439)
                      +.+++++++++|.|.+.|+|.|++.|+|+||+|||+|+.+.|+||+.+++.+.+++..+++|.++.++.+++.|...   
T Consensus        81 ~~~i~vi~~~~n~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~~i~~~~~~~~~~---  157 (328)
T d1xhba2          81 KVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAG---  157 (328)
T ss_dssp             SSCEEEEECSSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECC---
T ss_pred             CCCeEEEEecccccchHHHHHHHHhhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEecceeeeccCceeeccC---
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999998854   


Q ss_pred             CCCceeeeeccceeEeecCCHHHHhhccC
Q psy8674         408 DHHYRGIFEWGMLYKENELPEREAKKRKY  436 (439)
Q Consensus       408 ~~~~~g~~~w~~~~~~~~~~~~~~~~~~~  436 (439)
                      ....++.|+|.+.+.+..++..++.....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (328)
T d1xhba2         158 SDMTYGGFNWKLNFRWYPVPQREMDRRKG  186 (328)
T ss_dssp             CTTEEEEECTTCCEEEEECCHHHHHHTTT
T ss_pred             Cccccccccccccccccccchhhhhcccc
Confidence            34567999999999999999998776543

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.6e-31  Score=250.06  Aligned_cols=187  Identities=44%  Similarity=0.866  Sum_probs=153.6

Q ss_pred             hhHHHHHHHHhcCCcEEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeeccc
Q psy8674           2 LDKKLEDYIERFNGKVRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGID   81 (439)
Q Consensus         2 ~~~~l~~~~~~~~~~i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~   81 (439)
                      +++.+++++++++++|++|++++|.|+++|+|.|++.|+|+||+|||+|+++.|+||+.+++.+++++..++++....+.
T Consensus        69 ~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~~i~  148 (328)
T d1xhba2          69 LKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVIS  148 (328)
T ss_dssp             GTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCeEEEEecccccchHHHHHHHHhhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEecceeeec
Confidence            35678899998887899999999999999999999999999999999999999999999999999998888888877776


Q ss_pred             CCCcccccccCCCCccccccccccccccCCCchHHHhh-ccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccch
Q psy8674          82 YQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKK-RKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGE  160 (439)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~E  160 (439)
                      ..+..+...   .....+.+.|.+.+.+...+...... ......+..++++.|+|+++||++|+++|||||+|+++|+|
T Consensus       149 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~vGgfDe~~~~~g~E  225 (328)
T d1xhba2         149 DDTFEYMAG---SDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGE  225 (328)
T ss_dssp             SSSCCEECC---CTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCC
T ss_pred             cCceeeccC---CccccccccccccccccccchhhhhccccccccccccceecceeeeeeHHHHHHhCCCCCCCcCcCch
Confidence            666544432   23344566666655555555443332 33455667788899999999999999999999999999889


Q ss_pred             hhHHHHHHHHhCCcEEEecccceeccccccc
Q psy8674         161 NFELSFKIWMCGGSIEWVPCSRIVSLIRPVF  191 (439)
Q Consensus       161 D~Dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~  191 (439)
                      |+|||+|++++|+++.+.|++.|+|+++...
T Consensus       226 D~Dl~~R~~~~G~~i~~~p~~~v~H~~~~~~  256 (328)
T d1xhba2         226 NLEISFRIWQCGGTLEIVTCSHVGHVFRKAT  256 (328)
T ss_dssp             CSHHHHHHHHTTCEEEEEEEEEEEEEC----
T ss_pred             HHHHHHHHHHhCCeEEEeCCeEEEEeCCCCC
Confidence            9999999999999999999999999876543

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=4.9e-22  Score=180.38  Aligned_cols=117  Identities=18%  Similarity=0.324  Sum_probs=104.2

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcC--------CCC
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNT--------ERE  340 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~--------~~~  340 (439)
                      |+||||||+||++ ..|.+||+|+++|+++++  |||||||||+|+|.+ +++++.+.  .++++++.+        .+.
T Consensus         1 P~vSiiip~yN~~-~~l~~~l~Si~~Qt~~~~--eiivvdd~S~d~t~~-~l~~~~~~--~~i~~~~~~~~~~~~~~~~~   74 (255)
T d1qg8a_           1 PKVSVIMTSYNKS-DYVAKSISSILSQTFSDF--ELFIMDDNSNEETLN-VIRPFLND--NRVRFYQSDISGVKERTEKT   74 (255)
T ss_dssp             CCEEEEEEESSCT-TTHHHHHHHHHTCSCCCE--EEEEEECSCCHHHHH-HHGGGGGS--TTEEEEECCCCSHHHHHSSC
T ss_pred             CEEEEEEecCCCH-HHHHHHHHHHHhCCCCCe--EEEEEECCCCccHHH-HHHHhhhh--cccccccccccccccccccc
Confidence            7899999999999 999999999999999987  999999999999988 88887644  379988764        678


Q ss_pred             CHHHHHHHHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCC-EEEEeee
Q psy8674         341 GLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMTVPVI  391 (439)
Q Consensus       341 g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~v~~~~  391 (439)
                      |.++|+|.|++.|+|+||+++|+|+.+.|++|+.+++.+..++. .++.+..
T Consensus        75 g~~~a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~~~~  126 (255)
T d1qg8a_          75 RYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSAS  126 (255)
T ss_dssp             HHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEE
T ss_pred             hhcccccccccccccccccccccccccccchHHHHHHHHHhCCCCCeEeecc
Confidence            99999999999999999999999999999999999999987654 5554443

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.8e-20  Score=168.61  Aligned_cols=114  Identities=12%  Similarity=0.098  Sum_probs=94.8

Q ss_pred             CCceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHH
Q psy8674         268 LPKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRS  347 (439)
Q Consensus       268 ~p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n  347 (439)
                      +-++|||||+||++ +.|.+||+||++|++++   |+|||||+|+|++.+ .+.+.....  ...++...++.|.+.|+|
T Consensus         2 ~~~~tvii~tyn~~-~~l~~~l~sl~~q~~~~---~~iiV~d~~sd~~~~-~i~~~~~~~--~~~~~~~~~~~g~~~a~n   74 (265)
T d1omza_           2 LDSFTLIMQTYNRT-DLLLRLLNHYQAVPSLH---KVIVVWNNVGEKGPE-ELWNSLGPH--PIPVIFKPQTANKMRNRL   74 (265)
T ss_dssp             TTCEEEEEEESSCH-HHHHHHHHHHTTSTTEE---EEEEEECCTTCCCTH-HHHHHTCCC--SSCEEEEECSSCCGGGGG
T ss_pred             CCcEEEEEEcCCCH-HHHHHHHHHHHcCCCcC---eEEEEECCCCCccHH-HHHHHhccc--ceEEEEecCCCCchhhhh
Confidence            45799999999999 99999999999999886   677777777777777 444333322  234444578889999999


Q ss_pred             HHHhhcCCCEEEEEcCCCccCCCChHHHHHhhhcCCCEEEE
Q psy8674         348 RGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTV  388 (439)
Q Consensus       348 ~g~~~a~~d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~  388 (439)
                      .|++.|+||||+++|+|+.++|++|+.+++.+++++..+++
T Consensus        75 ~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~  115 (265)
T d1omza_          75 QVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIG  115 (265)
T ss_dssp             SCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEE
T ss_pred             hhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCCccee
Confidence            99999999999999999999999999999999998876555

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=4.3e-16  Score=140.53  Aligned_cols=157  Identities=6%  Similarity=-0.013  Sum_probs=103.4

Q ss_pred             hHHHHHHHHhcCCcEEEEEec--------CCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCC-eEe
Q psy8674           3 DKKLEDYIERFNGKVRLIRNT--------EREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRK-IMT   73 (439)
Q Consensus         3 ~~~l~~~~~~~~~~i~~i~~~--------~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~-~~v   73 (439)
                      .+.++++.+.  ++|++++++        +|.|+++|+|.|++.|+|+||+|||+|+++.|+||+.+++.+..++. +++
T Consensus        45 ~~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v  122 (255)
T d1qg8a_          45 LNVIRPFLND--NRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI  122 (255)
T ss_dssp             HHHHGGGGGS--TTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHhhhh--cccccccccccccccccccchhcccccccccccccccccccccccccccchHHHHHHHHHhCCCCCeE
Confidence            3445555433  379999875        78999999999999999999999999999999999999999987764 455


Q ss_pred             eeeeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCC----
Q psy8674          74 VPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGG----  149 (439)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGg----  149 (439)
                      .+.......+.-        .............                 ..........++++++||++++++++    
T Consensus       123 ~~~~~~~~~~~~--------~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (255)
T d1qg8a_         123 YSASKTYHLNEN--------RDIVKETVRPAAQ-----------------VTWNAPCAIDHCSVMHRYSVLEKVKEKFGS  177 (255)
T ss_dssp             EEEEEEEEEC-----------CEEEEEEECCCS-----------------CBSCCTTTSCGGGEEEETHHHHHHHHHHSS
T ss_pred             eecceeeeeCCC--------CcEeeeecccchh-----------------hhhhhcccccchhHHHHHHHHHHHHHhhCC
Confidence            443322211100        0000000000000                 00001112345668999999988753    


Q ss_pred             -CCCCCCCccchhhHHHHHHHHhCCcEEEecccceeccc
Q psy8674         150 -YDPGLLVWGGENFELSFKIWMCGGSIEWVPCSRIVSLI  187 (439)
Q Consensus       150 -fde~~~~~~~ED~Dl~~Rl~~~G~~i~~~p~~~v~H~~  187 (439)
                       |||....+..||.||++|+. .++++.++++....+..
T Consensus       178 ~~~~~~~~~~~~D~dl~lrl~-~~~~~~~i~~~l~~~~~  215 (255)
T d1qg8a_         178 YWDESPAFYRIGDARFFWRVN-HFYPFYPLDEELDLNYI  215 (255)
T ss_dssp             SSCCCGGGSTTHHHHHHHHHT-TTCCBEEEEEEEEEEEE
T ss_pred             CccccchhcchhhHHHHHHHH-cCCCEEEecCCEEEEEE
Confidence             56665556679999999996 57788888877665543

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=2.8e-12  Score=113.99  Aligned_cols=134  Identities=8%  Similarity=-0.020  Sum_probs=86.0

Q ss_pred             EEEEEecCCCChhHHHHhhhhhccCcEEEEecCCcccCCCchHHHHHHHhcCCCeEeeeeeecc-cCCCcccccccCCCC
Q psy8674          17 VRLIRNTEREGLIRTRSRGAKESRGEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVPVIDGI-DYQTWEFRSVYEPDH   95 (439)
Q Consensus        17 i~~i~~~~n~G~a~arN~G~~~A~g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~   95 (439)
                      ++++...+|.|.++|+|.|++.|+||||+|||+|++++|+||+.+++.+++++...+++..... .........      
T Consensus        58 ~~~~~~~~~~g~~~a~n~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------  131 (265)
T d1omza_          58 IPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGIYSY------  131 (265)
T ss_dssp             SCEEEEECSSCCGGGGGSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESCEEEEEEEETTEEEE------
T ss_pred             eEEEEecCCCCchhhhhhhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCCcceecccccccccCCccccc------
Confidence            4555668899999999999999999999999999999999999999999988776664432221 111100000      


Q ss_pred             ccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCC-----CccchhhHHHHHHHH
Q psy8674          96 HYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLL-----VWGGENFELSFKIWM  170 (439)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~-----~~~~ED~Dl~~Rl~~  170 (439)
                        .....+..                ............|+.++++|+.++..+.+.+...     ....+|.++......
T Consensus       132 --~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  193 (265)
T d1omza_         132 --GGFELQTP----------------GPGNGDQYSMVLIGASFFNSKYLELFQKQPAAVHALIDETQNCDDIAMNFLVTR  193 (265)
T ss_dssp             --ECTTSCCC----------------SSSSSCCBSEECTTEEEEETHHHHHHHTSCHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             --cccccccc----------------ccccccccceeccceeEecHHHHHHHhhhHHHHhhhhhhhcchHHHHHHHHHHH
Confidence              00000000                0011111223456778999999988777655431     122478888877766


Q ss_pred             hCCc
Q psy8674         171 CGGS  174 (439)
Q Consensus       171 ~G~~  174 (439)
                      .++.
T Consensus       194 ~~~~  197 (265)
T d1omza_         194 HTGK  197 (265)
T ss_dssp             HHSS
T ss_pred             hcCC
Confidence            6544

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

Probab=99.16  E-value=2.3e-11  Score=113.36  Aligned_cols=114  Identities=17%  Similarity=0.127  Sum_probs=73.6

Q ss_pred             EEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH---HcCCcEEEEEc----CCCCCHH-
Q psy8674         272 SVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRN----TEREGLI-  343 (439)
Q Consensus       272 siiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~v~~i~~----~~~~g~~-  343 (439)
                      -||||+|||+...+..++ ++....+.  ..|||||||+|+|.+.+ +.+....   ..+..+.....    ..+.|++ 
T Consensus         2 lVVIP~~NEe~~il~~~v-~~~a~~P~--~~eIvVvDdsSdDtt~~-i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~   77 (381)
T d2bo4a1           2 LVVFPFKHEHPEVLLHNV-RVAAAHPR--VHEVLCIGYERDQTYEA-VERAAPEISRATGTPVSVRLQERLGTLRPGKGD   77 (381)
T ss_dssp             EEEEECCSSCHHHHHHHH-HHHHHSTT--CCEEEEEESSCCHHHHH-HHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHH
T ss_pred             EEEEEcCCCcHHHHHHHH-HHHHhCCC--eeEEEEEcCCCCCcHHH-HHHHhhhhhccccccchhhhhcccccccCCCcH
Confidence            389999999844555555 44444432  23788877777775533 4444322   12223333222    1234555 


Q ss_pred             ---HHHHHHHhhcCCCEEEEEcCCCc-cCCCChHHHHHhhhcCCCEEEEee
Q psy8674         344 ---RTRSRGAKESRGEVIVFLDAHCE-VGLNWLPPLLAPIYSDRKIMTVPV  390 (439)
Q Consensus       344 ---~a~n~g~~~a~~d~i~~ld~D~~-~~~~~l~~l~~~~~~~~~~~v~~~  390 (439)
                         .|+..|++.++||+++|+|+|.. ..|+|+..|+..++.+. ++|.|.
T Consensus        78 g~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~-d~V~g~  127 (381)
T d2bo4a1          78 GMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGY-GLVRHY  127 (381)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTC-SEEEEE
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHhhhc-CeEEEe
Confidence               46666778899999999999985 78999999999998654 445543

>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.84  E-value=1.3e-08  Score=89.89  Aligned_cols=130  Identities=17%  Similarity=0.131  Sum_probs=83.8

Q ss_pred             HHHHHHHHhcCC--cEEEEEec--CCCChhHHHHhhhhhcc----CcEEEEecCCcccCCCchHHHHHHHhcCCCeEeee
Q psy8674           4 KKLEDYIERFNG--KVRLIRNT--EREGLIRTRSRGAKESR----GEVIVFLDAHCEVGLNWLPPLLAPIYSDRKIMTVP   75 (439)
Q Consensus         4 ~~l~~~~~~~~~--~i~~i~~~--~n~G~a~arN~G~~~A~----g~~i~flD~D~~~~~~~l~~l~~~~~~~~~~~v~~   75 (439)
                      ..+..|+++...  .|-||.-.  ..+..+...|+|+..|.    .++++|.|-|+.+..+.+.-            .+ 
T Consensus        69 ~~l~~~L~~q~~~y~I~vieQ~~~~~FNRg~llNiGf~~a~~~~~~~~~ifHDVDllP~~~~~~Y------------~~-  135 (271)
T d1pzta_          69 YYLHPILQRQQLDYGIYVINQAGESMFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTY------------RC-  135 (271)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEECSSSCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSCC------------SC-
T ss_pred             HHHHHHHHhcCCCEEEEEEeccCCcchhhhhhhhHHHHHhhhccCccEEEEecCCcCcccccccc------------cc-
Confidence            345666665332  45455422  34678999999998874    46799999999876553210            00 


Q ss_pred             eeecccCCCcccccccCCCCccccccccccccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCC
Q psy8674          76 VIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLL  155 (439)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~  155 (439)
                           .........       ....+...                      .......|++++++++.|++||||++.|.
T Consensus       136 -----~~~p~h~~~-------~~~~~~~~----------------------~~y~~~~GGv~~~~k~~f~kINGfsN~yw  181 (271)
T d1pzta_         136 -----FSQPRHISV-------AMDKFGFS----------------------LPYVQYFGGVSALSKQQFLSINGFPNNYW  181 (271)
T ss_dssp             -----CSSCEECCC-------EEGGGTTS----------------------CSCTTCCCSEEEEEHHHHHHTTSCCSCCC
T ss_pred             -----cccCcceee-------eccccccc----------------------cccccccceeeeecHHHHhhcCCCCcccc
Confidence                 000000000       00011111                      11124568899999999999999999999


Q ss_pred             CccchhhHHHHHHHHhCCcEEEecc
Q psy8674         156 VWGGENFELSFKIWMCGGSIEWVPC  180 (439)
Q Consensus       156 ~~~~ED~Dl~~Rl~~~G~~i~~~p~  180 (439)
                      .||+||.||..|+..+|.++...+.
T Consensus       182 GWGgEDddl~~R~~~~g~~i~R~~~  206 (271)
T d1pzta_         182 GAGGEDDDIYNRLAFRGMSVSRPNA  206 (271)
T ss_dssp             SSSSHHHHHHHHHHHTTCCCBCCCT
T ss_pred             CCccccHHHHHHHHHcCCeEEccCC
Confidence            9999999999999999998765443

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

Probab=98.30  E-value=3.1e-07  Score=84.97  Aligned_cols=135  Identities=17%  Similarity=0.114  Sum_probs=80.9

Q ss_pred             CChhHHHHhhhhhccCcEEEEecCCc-ccCCCchHHHHHHHhcCCCeEeeeeeecccCCCcccccccCCCCccccccccc
Q psy8674          26 EGLIRTRSRGAKESRGEVIVFLDAHC-EVGLNWLPPLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWG  104 (439)
Q Consensus        26 ~G~a~arN~G~~~A~g~~i~flD~D~-~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (439)
                      .|...|...|++.|+|++|+|+|+|. ...|+|+..++..++.+. +++.+.....               ...|...|.
T Consensus        77 ~g~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~-d~V~g~y~R~---------------~~~grvt~~  140 (381)
T d2bo4a1          77 DGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGY-GLVRHYFPRA---------------STDAMITWM  140 (381)
T ss_dssp             HHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTC-SEEEEECCCC---------------TTSCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHhhhc-CeEEEeeccc---------------cCCCceehH
Confidence            34446788888999999999999998 478999999999998654 4443321110               001222222


Q ss_pred             cccccCCCchHHHhhccCCCCCccCccccceEEEEeHHHHHHhC-----CCCCCCCCccchhhHHHHHHHHhCCcEEEe-
Q psy8674         105 MLYKENELPEREAKKRKYNSEPYKSPTHAGGLFAMDRAFFLELG-----GYDPGLLVWGGENFELSFKIWMCGGSIEWV-  178 (439)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iG-----gfde~~~~~~~ED~Dl~~Rl~~~G~~i~~~-  178 (439)
                      +...+.   ...  ........+.-|  .|+.++++|++++.+-     .+++++   | =|+.|...+.++|.+|..+ 
T Consensus       141 l~~pll---~~l--~~~~~~~~i~dP--l~G~~a~~R~~~~~L~~~~~v~~~~~~---G-~Di~lt~~A~~~G~rI~EV~  209 (381)
T d2bo4a1         141 ITRTGF---ALL--WPHTELSWIEQP--LGGELLMRREVAAMLYEDERVRRRSDW---G-IDTLYTFVTVQQGVSIYECY  209 (381)
T ss_dssp             THHHHH---HHH--CTTSSGGGCSCT--TCCCEEEEHHHHHHHHHCHHHHTCCST---T-HHHHHHHHHHHTTCCEEEEE
T ss_pred             hhHHHH---HHH--hhhhcccccccC--CcccceeeHHHHHHhhhhccccccCCc---c-cchHHHHHHHHcCCeEEecC
Confidence            111100   000  000001112222  4678999999998762     234444   3 7999999999999999886 


Q ss_pred             -cccceeccc
Q psy8674         179 -PCSRIVSLI  187 (439)
Q Consensus       179 -p~~~v~H~~  187 (439)
                       |...+.+.+
T Consensus       210 i~~~~l~~~f  219 (381)
T d2bo4a1         210 IPEGKAHRLY  219 (381)
T ss_dssp             CTTCCCCCCS
T ss_pred             CCHHHHHHHH
Confidence             444444333

>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: N-acetylglucosaminyltransferase I
domain: N-acetylglucosaminyltransferase I
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.91  E-value=4e-05  Score=69.07  Aligned_cols=114  Identities=13%  Similarity=0.202  Sum_probs=77.1

Q ss_pred             CceEEEEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCC----------
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTE----------  338 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~----------  338 (439)
                      +-+-|+|.+||++ . +.+||+||+++........|+|..||+.+++.+ .+..+.+    .+.++....          
T Consensus         2 ~viPVlv~a~NRP-~-l~r~LesLlk~~p~~~~~~I~Vs~DG~~~~~~~-~v~~~~~----~v~~I~~~~~~~~~~~~~~   74 (343)
T d1fo8a_           2 AVIPILVIACDRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQ-VIASYGS----AVTHIRQPDLSNIAVQPDH   74 (343)
T ss_dssp             CCCCEEEEESSCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHH-HHHTTGG----GSEEEECSCCCCCCCCTTC
T ss_pred             CcccEEEEEcCHH-H-HHHHHHHHHhcCccccCccEEEEecCCchhHHH-HHHHHHH----HHHHhcCCccccceecchh
Confidence            4577999999997 5 899999999875433234799999999877654 5554432    344443221          


Q ss_pred             -----CCCHH----HHHHHHHhhcCCCEEEEEcCCCccCCCCh---HHHHHhhhcCCCEEEEe
Q psy8674         339 -----REGLI----RTRSRGAKESRGEVIVFLDAHCEVGLNWL---PPLLAPIYSDRKIMTVP  389 (439)
Q Consensus       339 -----~~g~~----~a~n~g~~~a~~d~i~~ld~D~~~~~~~l---~~l~~~~~~~~~~~v~~  389 (439)
                           +.|.+    .|++..+.....+.+++|.+|+.+.|+++   ..++..++.++.+.+++
T Consensus        75 ~k~~~n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~D~~i~~IS  137 (343)
T d1fo8a_          75 RKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVS  137 (343)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             hcccchhHHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHHHHHHHhcCCCEEEEe
Confidence                 12222    33444444445689999999999999999   56667777777755443

>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.14  E-value=0.0059  Score=52.85  Aligned_cols=75  Identities=19%  Similarity=0.141  Sum_probs=54.2

Q ss_pred             CceEEEEEecCCChhHHHHHHHH---HHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHH
Q psy8674         269 PKASVILVFHNEGFSSLMRTVHS---IIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRT  345 (439)
Q Consensus       269 p~vsiiip~~n~~~~~l~~~l~s---l~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a  345 (439)
                      -+++||||.+|++ +.|...|..   +++....  .++|+||+...+                         ..+..+..
T Consensus        49 ~kvaIIIPyRdR~-~hL~~fl~~l~~~L~~q~~--~y~I~vieQ~~~-------------------------~~FNRg~l  100 (271)
T d1pzta_          49 HKVAIIIPFRNRQ-EHLKYWLYYLHPILQRQQL--DYGIYVINQAGE-------------------------SMFNRAKL  100 (271)
T ss_dssp             CEEEEEEEESSCH-HHHHHHHHHHHHHHHHTTC--EEEEEEEEECSS-------------------------SCCCHHHH
T ss_pred             ceEEEEEecCChH-HHHHHHHHHHHHHHHhcCC--CEEEEEEeccCC-------------------------cchhhhhh
Confidence            3799999999999 877766554   4443322  349999986432                         23568889


Q ss_pred             HHHHHhhcC----CCEEEEEcCCCccCCCC
Q psy8674         346 RSRGAKESR----GEVIVFLDAHCEVGLNW  371 (439)
Q Consensus       346 ~n~g~~~a~----~d~i~~ld~D~~~~~~~  371 (439)
                      +|.|+..|.    .++++|.|.|..+..+.
T Consensus       101 lNiGf~~a~~~~~~~~~ifHDVDllP~~~~  130 (271)
T d1pzta_         101 LNVGFKEALKDYDYNCFVFSDVDLIPMNDH  130 (271)
T ss_dssp             HHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred             hhHHHHHhhhccCccEEEEecCCcCccccc
Confidence            999988663    67899999998876543

>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: 1,3-glucuronyltransferase
domain: Beta-1,3-glucuronyltransferase 1, GlcAT-P
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.053  Score=45.64  Aligned_cols=100  Identities=14%  Similarity=0.202  Sum_probs=60.6

Q ss_pred             CCceEEEEEecCCCh--hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC------
Q psy8674         268 LPKASVILVFHNEGF--SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER------  339 (439)
Q Consensus       268 ~p~vsiiip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~------  339 (439)
                      +|.|-||.|||.+..  ..|.+.-++|..-  +++  -.|||+|+.....   ...++.++.+-..+.+.....      
T Consensus         1 lp~I~vVTPTy~R~~Q~~~LtRLa~TL~lV--p~l--~WIVVEda~~~t~---~va~lL~~sgl~y~HL~~~~p~~~~~~   73 (252)
T d1v82a_           1 LPTIHVVTPTYSRPVQKAELTRMANTLLHV--PNL--HWLVVEDAPRRTP---LTARLLRDTGLNYTHLHVETPRNYKLR   73 (252)
T ss_dssp             CCEEEEEEEECCSTTHHHHHHHHHHHHTTC--SSE--EEEEEESSSSCCH---HHHHHHHHHCCEEEEEECCCCHHHHCC
T ss_pred             CCCEEEECCCCCchhhHHHHHHHHhHHhcC--CCc--eEEEEeCCCCCCH---HHHHHHHHcCCceEeeccCCCcccccc
Confidence            478999999998862  4456666666433  455  8899987543211   222333333323344422211      


Q ss_pred             ---------CCHHHHHHHHHhhcC---------CCEEEEEcCCCccCCCChHHH
Q psy8674         340 ---------EGLIRTRSRGAKESR---------GEVIVFLDAHCEVGLNWLPPL  375 (439)
Q Consensus       340 ---------~g~~~a~n~g~~~a~---------~d~i~~ld~D~~~~~~~l~~l  375 (439)
                               .| ...+|.|++..+         .-++.|.|+|..++-..+++|
T Consensus        74 ~~~~~~~~~rg-~~qRn~aL~~iR~~~~~~~~~~GVVyFADDdNtYsl~lFdem  126 (252)
T d1v82a_          74 GDARDPRIPRG-TMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEM  126 (252)
T ss_dssp             C-----CCCTT-HHHHHHHHHHHHHHSCTTCCCCEEEEECCTTSEECHHHHHHH
T ss_pred             ccccccccccc-HHHHHHHHHHHHHhcccccCcceEEEEecCCCcccHHHHHHH
Confidence                     11 357899987541         358899999988887766664

>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: 1,3-glucuronyltransferase
domain: 1,3-Glucuronyltransferase I (glcAT-I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.19  Score=42.21  Aligned_cols=98  Identities=12%  Similarity=0.119  Sum_probs=60.3

Q ss_pred             ceEEEEEecCCCh--hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCC--------
Q psy8674         270 KASVILVFHNEGF--SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTER--------  339 (439)
Q Consensus       270 ~vsiiip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~--------  339 (439)
                      +|-||.|||-+..  ..|.+..++|..-  +++  -.|||+|+.....   .+.++.++.+-..+.+..+..        
T Consensus         2 TIyvVTPTY~R~~Q~a~LtRLa~TL~lV--p~l--~WIVVEDa~~~t~---~v~~lL~~sgl~y~HL~~~tp~~~~~~~~   74 (261)
T d3cu0a1           2 TIYVVTPTYARLVQKAELVRLSQTLSLV--PRL--HWLLVEDAEGPTP---LVSGLLAASGLLFTHLVVLTPKAQRLREG   74 (261)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHHHHHTTS--SSE--EEEEEESSSSCCH---HHHHHHHHHCSEEEEEECCCC--------
T ss_pred             eEEEECCCCCCchhHHHHHHHHHHHhcC--CCe--eEEEEECCCCCCH---HHHHHHHHcCCceEEeecCCchhhccccc
Confidence            5779999998851  4566666666543  455  8899987653211   233334443333444332111        


Q ss_pred             -------CCHHHHHHHHHhhcC-----------------CCEEEEEcCCCccCCCChHHH
Q psy8674         340 -------EGLIRTRSRGAKESR-----------------GEVIVFLDAHCEVGLNWLPPL  375 (439)
Q Consensus       340 -------~g~~~a~n~g~~~a~-----------------~d~i~~ld~D~~~~~~~l~~l  375 (439)
                             .| ...+|.|++..+                 .-++.|.|+|..++-..+++|
T Consensus        75 ~~~~~~prg-v~qRn~aL~~ir~~~~~~~~~~~~~~~~~~GVVyFADDdNtYsl~LF~em  133 (261)
T d3cu0a1          75 EPGWVHPRG-VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEM  133 (261)
T ss_dssp             ---CCCCCS-HHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred             CcccccccC-HHHHHHHHHHHHHcccccccccccccCCCceEEEEecCCCcccHHHHHHH
Confidence                   11 257899998654                 258899999998887777764

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.96  E-value=0.17  Score=44.06  Aligned_cols=100  Identities=9%  Similarity=0.131  Sum_probs=68.6

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH---HcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      .+|+.+.  ..|...|+.+......    ||+||.+.....    .++++..   .++.+++++..++..|.+.|...+.
T Consensus        26 llpi~gk--PiI~~~l~~l~~~Gi~----ei~ii~~~~~~~----~i~~~~~~~~~~g~~I~y~~q~~~~Gta~ai~~a~   95 (292)
T d1fxoa_          26 LLPVYDK--PMIYYPLSTLMLAGIR----EILIISTPQDTP----RFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGE   95 (292)
T ss_dssp             GSEETTE--ETTHHHHHHHHHTTCC----EEEEEECTTTHH----HHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTH
T ss_pred             cCEECCE--ehHHHHHHHHHHCCCC----EEEEEeCcCCHH----HHHHHhccccccCeEEEEccCCCCCcHHHHHHhhh
Confidence            4567776  4888888888776432    887776655433    3444432   3445788888888899999999999


Q ss_pred             hhcCCC-EEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         351 KESRGE-VIVFLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       351 ~~a~~d-~i~~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                      +....+ .++++.+| .+...-+..+++...+...
T Consensus        96 ~~i~~~~~~lil~dD-~~~~~dl~~ll~~h~~~~~  129 (292)
T d1fxoa_          96 SFIGNDLSALVLGDN-LYYGHDFHELLGSASQRQT  129 (292)
T ss_dssp             HHHTTSEEEEEETTE-EEECTTHHHHHHHHHTCCS
T ss_pred             hhcCCCceEEEEccc-cccCcCHHHHHHHHHhCCC
Confidence            988765 55556555 4444458888888876665

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.26  Score=42.74  Aligned_cols=101  Identities=14%  Similarity=0.204  Sum_probs=64.8

Q ss_pred             EEEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHH---HHcCCcEEEEEcCCCCCHHHHHHHHH
Q psy8674         274 ILVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYI---QRFNGKVRLIRNTEREGLIRTRSRGA  350 (439)
Q Consensus       274 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~---~~~~~~v~~i~~~~~~g~~~a~n~g~  350 (439)
                      .+|.+|.  ..|...|+.+......    ||+||-+.-...    .++.+.   .+++..+.++..++..|.+.|...+.
T Consensus        26 llpi~~k--p~i~~~l~~l~~~gi~----~i~iv~~~~~~~----~~~~~~~~g~~~gi~I~y~~Q~~plGta~Ai~~a~   95 (291)
T d1mc3a_          26 LLPIYDK--PMIYYPLSVLMLAGIR----EILIITTPEDKG----YFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGE   95 (291)
T ss_dssp             GSEETTE--ETTHHHHHHHHHTTCC----EEEEEECTTTHH----HHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTH
T ss_pred             ccEECCE--ehHHHHHHHHHHcCCC----EEEEEeCcccHH----HHHHHhCchHhhCcEEEEEECCCCCchHHHHHHHH
Confidence            4566776  4888888888776532    777775543322    444443   23445788888888899999999998


Q ss_pred             hhcCCC-EEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         351 KESRGE-VIVFLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       351 ~~a~~d-~i~~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                      +....+ +++++.+|..+..++...+..+......
T Consensus        96 ~fi~~~~~~lvlgddi~~~~~~~~~l~~~~~~~~~  130 (291)
T d1mc3a_          96 TFLNGEPSCLVLGDNIFFGQGFSPKLRHVAARTEG  130 (291)
T ss_dssp             HHHTTSCEEEEETTEEEECSSCHHHHHHHTTCCSS
T ss_pred             HHhCCCCeEEEECCCcccCcCHHHHHHHHHhCcCC
Confidence            887755 5666655555555544444444444333

>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: N-acetylglucosaminyltransferase I
domain: N-acetylglucosaminyltransferase I
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.61  E-value=0.49  Score=41.65  Aligned_cols=112  Identities=13%  Similarity=0.114  Sum_probs=63.3

Q ss_pred             cCcEEEEecCCcccCCCchH---HHHHHHhcCCCeEeeeeeecccCCCcccccccCCCCccccccccccccccCCCchHH
Q psy8674          40 RGEVIVFLDAHCEVGLNWLP---PLLAPIYSDRKIMTVPVIDGIDYQTWEFRSVYEPDHHYRGIFEWGMLYKENELPERE  116 (439)
Q Consensus        40 ~g~~i~flD~D~~~~~~~l~---~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (439)
                      ..+.+++|..|+.++|+++.   .++..++.++......+...   .......                           
T Consensus        99 ~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~D~~i~~IS~wNd---nG~~~~~---------------------------  148 (343)
T d1fo8a_          99 NYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWND---NGKEQMV---------------------------  148 (343)
T ss_dssp             CCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCT---TCBGGGS---------------------------
T ss_pred             CCceEEEEecCceeeHHHHHHHHHHHHHHhcCCCEEEEecccc---CCCcccc---------------------------
Confidence            45899999999999999984   55666666766544322110   0000000                           


Q ss_pred             HhhccCCCCCccCccccceEEEEeHHHHHHhCCCCCCCCCccchhhHHHHHH--HHhCCcEEEecccceeccccc
Q psy8674         117 AKKRKYNSEPYKSPTHAGGLFAMDRAFFLELGGYDPGLLVWGGENFELSFKI--WMCGGSIEWVPCSRIVSLIRP  189 (439)
Q Consensus       117 ~~~~~~~~~~~~~~~~~g~~~~irr~~f~~iGgfde~~~~~~~ED~Dl~~Rl--~~~G~~i~~~p~~~v~H~~~~  189 (439)
                        ........+++.++.|-.+|+.|++|+++..   .   |...+.|..+|.  .+.|-.+..---+++.|..+.
T Consensus       149 --~~~~~~~lyrs~~fpg~GW~~~r~~W~el~~---k---wp~~~Wd~w~r~~~~rkgr~cI~PevsRt~~fG~~  215 (343)
T d1fo8a_         149 --DSSKPELLYRTDFFPGLGWLLLAELWAELEP---K---WPKAFWDDWMRRPEQRKGRACVRPEISRTMTFGRK  215 (343)
T ss_dssp             --CTTCTTCEEEESSCCCSSEEEEHHHHHHHGG---G---CCSSCHHHHHTSHHHHTTCEEEEESSBSEEECC--
T ss_pred             --cCCCCceEEeecCCCchhhheeHHHHHHhhh---c---CCCCCcHHhhhhHHhcCCCeeeccCccceeeeccc
Confidence              0001112234556667778999999998762   2   223466667774  444544443344556777544

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.93  E-value=0.55  Score=40.62  Aligned_cols=99  Identities=11%  Similarity=0.111  Sum_probs=63.4

Q ss_pred             EEecCCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHH---HcCCcEEEEEcCCCCCHHHHHHHHHh
Q psy8674         275 LVFHNEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQ---RFNGKVRLIRNTEREGLIRTRSRGAK  351 (439)
Q Consensus       275 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~g~~~a~n~g~~  351 (439)
                      +|..+.  ..|..+|+.+......    +++||-+.....    .++.+..   .++.++.++..++..|.+.|...+..
T Consensus        29 l~i~~k--pii~~~l~~l~~~g~~----~i~Iv~~~~~~~----~~~~~~~~~~~~~~~i~~v~e~~~~gta~Al~~a~~   98 (295)
T d1lvwa_          29 LPIYDK--PMIYYPLSVLMLAGIR----DILIISTPRDLP----LYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKD   98 (295)
T ss_dssp             SEETTE--ETTHHHHHHHHHTTCC----EEEEEECTTTHH----HHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHH
T ss_pred             CeECCE--EHHHHHHHHHHHCCCC----eEEEEeCcccHH----HHHHHhccchhcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            455454  6888899988775432    677776654432    4444432   33346777878888899999988888


Q ss_pred             hcCC-CEEEEEcCCCccCCCChHHHHHhhhcCCC
Q psy8674         352 ESRG-EVIVFLDAHCEVGLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       352 ~a~~-d~i~~ld~D~~~~~~~l~~l~~~~~~~~~  384 (439)
                      .... ++++++.+|..+ ...+..++....+...
T Consensus        99 ~l~~~~~~li~~~d~~~-~~~~~~~~~~~~~~~~  131 (295)
T d1lvwa_          99 FIGDSKVALVLGDNVFY-GHRFSEILRRAASLED  131 (295)
T ss_dssp             HHTTSCEEEEETTCCEE-CTTHHHHHHHHHTCCS
T ss_pred             HcCCCCEEEEeCCccee-chhHHHHHHHHHhCCC
Confidence            7765 566666655444 4456666666655554

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.95  E-value=4.1  Score=32.74  Aligned_cols=109  Identities=8%  Similarity=0.091  Sum_probs=65.7

Q ss_pred             CceEEEEEecCCC-------------hhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEE
Q psy8674         269 PKASVILVFHNEG-------------FSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIR  335 (439)
Q Consensus       269 p~vsiiip~~n~~-------------~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~  335 (439)
                      |++..|||+....             ...|.-+++++.+...-+   +|||+.|   +.    .+.+.+..++  +.++.
T Consensus         2 ~ki~aiIpaR~~S~Rlp~K~l~~i~gkpLi~~~i~~~~ks~~id---~Iivstd---~~----~i~~~~~~~~--~~~~~   69 (228)
T d1qwja_           2 PHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQ---SVWVSTD---HD----EIENVAKQFG--AQVHR   69 (228)
T ss_dssp             CCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHHHTCCS---EEEEEES---CH----HHHHHHHHTT--CEEEE
T ss_pred             CCEEEEeccCCCCCCCCCcchhhhCCeeHHHHHHHHHHhcCCcc---eEEEecc---hh----hhhhhhhhcC--ccccc
Confidence            5788888887543             146777888887655432   6776643   22    2223333433  44443


Q ss_pred             cCC-C----CCHHHHHHHHHhhc-CCCEEEEEcCCCcc-CCCChHHHHHhhhcCCCEEEEe
Q psy8674         336 NTE-R----EGLIRTRSRGAKES-RGEVIVFLDAHCEV-GLNWLPPLLAPIYSDRKIMTVP  389 (439)
Q Consensus       336 ~~~-~----~g~~~a~n~g~~~a-~~d~i~~ld~D~~~-~~~~l~~l~~~~~~~~~~~v~~  389 (439)
                      ... .    .........+++.- ..++++++.+|.-+ .+..++.++..+.......+.+
T Consensus        70 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~  130 (228)
T d1qwja_          70 RSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFS  130 (228)
T ss_dssp             CCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEE
T ss_pred             cccccccccchhhhhhhhccccccccceeeeecccccccCchhhhhhhhhhhccCcccccc
Confidence            321 1    22333444445443 47899999999886 6889999999987766644443

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=83.58  E-value=2.8  Score=33.70  Aligned_cols=90  Identities=9%  Similarity=0.140  Sum_probs=60.7

Q ss_pred             CCChhHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhcCCCEE
Q psy8674         279 NEGFSSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKESRGEVI  358 (439)
Q Consensus       279 n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a~~d~i  358 (439)
                      +.. ..+..+++++.......   +|||+.+.  .   + .++    .+...+.++....  ....+...|++..+.++|
T Consensus        27 ~gk-pii~~~l~~~~~~~~~~---~Ivvv~~~--~---~-~~~----~~~~~~~~v~Gg~--~r~~Sv~~gl~~~~~~~V   90 (205)
T d1w55a1          27 GND-PLWLYATKNLSSFYPFK---KIVVTSSN--I---T-YMK----KFTKNYEFIEGGD--TRAESLKKALELIDSEFV   90 (205)
T ss_dssp             BTE-EHHHHHHHHHHTTSCCS---CEEEEESC--H---H-HHH----TTCSSSEEEECCS--SHHHHHHHHHTTCCSSEE
T ss_pred             CCE-EHHHHHHHHHHhhcccc---cccccccc--c---c-ccc----ccccccccccccc--chhhhhhhhhhhhhhcce
Confidence            444 68888899887643322   67777432  1   1 222    3333567765322  345667779999999999


Q ss_pred             EEEcCCCcc-CCCChHHHHHhhhcCCC
Q psy8674         359 VFLDAHCEV-GLNWLPPLLAPIYSDRK  384 (439)
Q Consensus       359 ~~ld~D~~~-~~~~l~~l~~~~~~~~~  384 (439)
                      ++.|+|--+ +++.+..+++.+.....
T Consensus        91 lIhd~~rP~i~~~~i~~li~~~~~~~~  117 (205)
T d1w55a1          91 MVSDVARVLVSKNLFDRLIENLDKADC  117 (205)
T ss_dssp             EEEETTCTTCCHHHHHHHHTTGGGCSE
T ss_pred             eeeccCcccCcHHHHHHHHhhhhcccc
Confidence            999999864 78889999998876554

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=82.57  E-value=1.8  Score=35.36  Aligned_cols=94  Identities=13%  Similarity=0.113  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHhcCCcCCcceEEEEeCCCChhhHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHhhc--CCCEEEE
Q psy8674         283 SSLMRTVHSIIKRTPAQYLEEIILVDDFSSKADLDQKLEDYIQRFNGKVRLIRNTEREGLIRTRSRGAKES--RGEVIVF  360 (439)
Q Consensus       283 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g~~~a--~~d~i~~  360 (439)
                      ..|..+|+++.+....   .+||||.+.. +   .++++++...+...+.++....  ....+.-.|+...  ..+++++
T Consensus        33 pli~~~l~~~~~~~~~---~~Iivv~~~~-~---~~~~~~~~~~~~~~~~~~~gg~--~r~~sv~~~l~~~~~~~~~Vli  103 (226)
T d1w77a1          33 PIALYSFFTFSRMPEV---KEIVVVCDPF-F---RDIFEEYEESIDVDLRFAIPGK--ERQDSVYSGLQEIDVNSELVCI  103 (226)
T ss_dssp             EHHHHHHHHHHTCTTE---EEEEEECCGG-G---THHHHTTTTSCSSEEEEECCCS--SHHHHHHHHHHTSCTTCSEEEE
T ss_pred             eHHHHHHHHHHhhccc---cceeeccchh-h---hhhhhccccccccccccccccc--hhhhhhhhhHhhhcccccccee
Confidence            6888889888764432   2777775422 1   1255666555544566553222  2344444556554  4789999


Q ss_pred             EcCCCcc-CCCChHHHHHhhhcCCCE
Q psy8674         361 LDAHCEV-GLNWLPPLLAPIYSDRKI  385 (439)
Q Consensus       361 ld~D~~~-~~~~l~~l~~~~~~~~~~  385 (439)
                      .|+|..+ +++.+..++.........
T Consensus       104 ~d~~~P~i~~~~i~~l~~~~~~~~~~  129 (226)
T d1w77a1         104 HDSARPLVNTEDVEKVLKDGSAVGAA  129 (226)
T ss_dssp             EETTCTTCCHHHHHHHHHHHHHHSEE
T ss_pred             cccccccccHHHhhhhhhhhhccCce
Confidence            9999775 678888888887765543