Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 92
cd01926 164
cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik
2e-42 PLN03149 186
PLN03149, PLN03149, peptidyl-prolyl isomerase H (c
7e-42 PTZ00060 183
PTZ00060, PTZ00060, cyclophilin; Provisional
9e-28 cd00317 146
cd00317, cyclophilin, cyclophilin: cyclophilin-typ
7e-21 pfam00160 144
pfam00160, Pro_isomerase, Cyclophilin type peptidy
3e-19 COG0652 158
COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase
2e-18 PTZ00221 249
PTZ00221, PTZ00221, cyclophilin; Provisional
2e-11 cd01928 153
cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3
2e-11 cd01922 146
cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY
5e-10 cd01923 159
cd01923, cyclophilin_RING, cyclophilin_RING: cyclo
7e-10 cd01920 155
cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP
2e-09 cd01927 148
cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo
7e-09 cd01925 171
cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC
3e-08 PRK10791 164
PRK10791, PRK10791, peptidyl-prolyl cis-trans isom
6e-08 cd01921 166
cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph
5e-05 PRK10903 190
PRK10903, PRK10903, peptidyl-prolyl cis-trans isom
2e-04
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain
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Score = 135 bits (343), Expect = 2e-42
Identities = 45/71 (63%), Positives = 54/71 (76%)
Query: 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIK 76
P VFFDI++G GR++ ELFADVVPKT+ENFR CTGE + P G+KG++FHRVI
Sbjct: 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIP 60
Query: 77 DFMIQGGDFVN 87
DFMIQGGDF
Sbjct: 61 DFMIQGGDFTR 71
This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional
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Score = 134 bits (339), Expect = 7e-42
Identities = 50/76 (65%), Positives = 60/76 (78%)
Query: 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASF 71
N NPVVFFD+++G GR+ ELFAD+ PKT+ENFRQFCTGEFR+ +P G+KG F
Sbjct: 14 PNPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQF 73
Query: 72 HRVIKDFMIQGGDFVN 87
HRVIKDFMIQGGDF+
Sbjct: 74 HRVIKDFMIQGGDFLK 89
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional
Back Show alignment and domain information
Score = 98.8 bits (246), Expect = 9e-28
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGF 66
QS P VFFDIS+ GR++FELF+DV PKT+ENFR C G+ + +
Sbjct: 7 QSFPEMSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHY 66
Query: 67 KGASFHRVIKDFMIQGGDFVN 87
KG+ FHR+I FM QGGD N
Sbjct: 67 KGSIFHRIIPQFMCQGGDITN 87
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases
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Score = 80.0 bits (198), Expect = 7e-21
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87
T GR++ EL+ D PKT ENF G F + G +FHRVI FMIQGGD
Sbjct: 4 TTKGRIVIELYGDEAPKTVENFLSLARGGF--------YDGTTFHRVIPGFMIQGGDPTG 55
This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
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Score = 76.2 bits (188), Expect = 3e-19
Identities = 31/68 (45%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 20 FFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFM 79
F DI+ T +GR++ ELF D PKT ENF C F + G FHRVI FM
Sbjct: 1 FLDIT---TNLGRIVIELFGDEAPKTVENFLSLCKKGF--------YDGTIFHRVIPGFM 49
Query: 80 IQGGDFVN 87
IQGGD
Sbjct: 50 IQGGDPTG 57
The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
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Score = 74.2 bits (183), Expect = 2e-18
Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 25 VGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
+ T G + EL+ D PKT NF Q F + G FHRVI FMIQGGD
Sbjct: 3 ILETNKGDITIELYPDKAPKTVANFLQLVKEGF--------YDGTIFHRVIPGFMIQGGD 54
Query: 85 F 85
Sbjct: 55 P 55
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional
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Score = 57.2 bits (138), Expect = 2e-11
Identities = 31/77 (40%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 4 WNQIQSQLR---NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRD 60
W Q R QN+ F DIS+G GR++FELF DVVP+T ENFR TG D
Sbjct: 37 WENYQKSHRMKEEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGID 96
Query: 61 ---AVPIGFKGASFHRV 74
V + + H V
Sbjct: 97 TNTGVKLDYLYTPVHHV 113
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like
Back Show alignment and domain information
Score = 55.5 bits (134), Expect = 2e-11
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G + ELF D PK ENF C + + G FHR IK FM+Q GD
Sbjct: 7 TNLGDIKIELFCDDCPKACENFLALCASGY--------YNGCIFHRNIKGFMVQTGD 55
Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2
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Score = 52.2 bits (125), Expect = 5e-10
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G + EL+ + PKT +NF + + + G FHR+IKDFMIQGGD
Sbjct: 4 TTMGEITLELYWNHAPKTCKNFYELAKRGY--------YNGTIFHRLIKDFMIQGGD 52
These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain
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Score = 52.0 bits (125), Expect = 7e-10
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T G + EL D PK ENF + C + + FHR I++FMIQGGD
Sbjct: 6 TNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTI--------FHRSIRNFMIQGGD 54
This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E
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Score = 50.9 bits (122), Expect = 2e-09
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T +G ++ EL+ D P T ENF + F + + FHRVI F+IQGG F
Sbjct: 4 TSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTI--------FHRVISGFVIQGGGF 53
coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain
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Score = 49.4 bits (118), Expect = 7e-09
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T G + LF + PKT ENF + + FHRVIK FMIQ GD
Sbjct: 4 TTKGDIHIRLFPEEAPKTVENFTTHARNGY--------YNNTIFHRVIKGFMIQTGD 52
This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16
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Score = 47.7 bits (114), Expect = 3e-08
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T G + EL++ PK NF Q C + + FHRV+ F+IQGGD
Sbjct: 12 TTAGDIDIELWSKEAPKACRNFIQLCLEGY--------YDNTIFHRVVPGFIIQGGD 60
C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
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Score = 47.1 bits (112), Expect = 6e-08
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T G ++ + F D P+T +NF +C F + + FHRVI FMIQGG F
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTI--------FHRVINGFMIQGGGF 55
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)
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Score = 39.2 bits (92), Expect = 5e-05
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGD 84
T +G ++ +LF D P NF + C ++ + F+ V KDF+ Q GD
Sbjct: 4 TTLGDLVIDLFTDECPLACLNFLKLCKLKY--------YNFCLFYNVQKDFIAQTGD 52
This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
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Score = 37.9 bits (88), Expect = 2e-04
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T G + EL + P + +NF + F + +FHRVI FMIQGG F
Sbjct: 35 TSAGNIELELNSQKAPVSVKNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGF 84
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
92
KOG0546|consensus 372
100.0 KOG0879|consensus 177
99.97 KOG0880|consensus 217
99.95 PTZ00221 249
cyclophilin; Provisional
99.92 PLN03149 186
peptidyl-prolyl isomerase H (cyclophilin H); Provi
99.92 cd01926 164
cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph
99.91 PTZ00060 183
cyclophilin; Provisional
99.9 KOG0111|consensus 298
99.88 COG0652 158
PpiB Peptidyl-prolyl cis-trans isomerase (rotamase
99.88 PRK10903 190
peptidyl-prolyl cis-trans isomerase A (rotamase A)
99.82 cd01927 148
cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ
99.82 cd01921 166
cyclophilin_RRM cyclophilin_RRM: cyclophilin-type
99.82 PRK10791 164
peptidyl-prolyl cis-trans isomerase B (rotamase B)
99.82 cd01923 159
cyclophilin_RING cyclophilin_RING: cyclophilin-typ
99.81 cd01928 153
Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro
99.81 cd01925 171
cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:
99.81 cd01920 155
cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc
99.81 cd01922 146
cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c
99.81 KOG0881|consensus 164
99.81 PF00160 155
Pro_isomerase: Cyclophilin type peptidyl-prolyl ci
99.79 cd01924 176
cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc
99.79 KOG0865|consensus 167
99.77 cd00317 146
cyclophilin cyclophilin: cyclophilin-type peptidyl
99.75 KOG0885|consensus 439
99.69 KOG0883|consensus 518
99.68 KOG0882|consensus 558
99.68 KOG0884|consensus 161
99.59 KOG0415|consensus 479
99.51 PRK00969 508
hypothetical protein; Provisional
88.53 TIGR03268 503
methan_mark_3 putative methanogenesis marker prote
88.03 COG4070 512
Predicted peptidyl-prolyl cis-trans isomerase (rot
85.0 PF12903 147
DUF3830: Protein of unknown function (DUF3830); In
84.48
>KOG0546|consensus
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Probab=100.00 E-value=2.1e-33 Score=207.31 Aligned_cols=76 Identities=61% Similarity=1.082 Sum_probs=72.2
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccC---CCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRR---DAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~---~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
..+|+|||||+|++.+.|||+||||.|+||+|||||++||+|+.|. .+++|+|||+.|||||++|||||||++.+|
T Consensus 6 ~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gn 84 (372)
T KOG0546|consen 6 RTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGN 84 (372)
T ss_pred CCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCC
Confidence 3689999999999999999999999999999999999999999974 388999999999999999999999999987
>KOG0879|consensus
Back Show alignment and domain information
Probab=99.97 E-value=2.6e-31 Score=175.28 Aligned_cols=80 Identities=73% Similarity=1.289 Sum_probs=76.0
Q ss_pred hhccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 10 QLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 10 ~~~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
+.+.+.+|.||||+++++.++|||+||||+|++|+|+|||+++|+|++...+.|++||++.|||||++|||||||+.+++
T Consensus 4 ~~r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gD 83 (177)
T KOG0879|consen 4 QLRSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGD 83 (177)
T ss_pred cccCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCC
Confidence 34568899999999999999999999999999999999999999999987899999999999999999999999999886
>KOG0880|consensus
Back Show alignment and domain information
Probab=99.95 E-value=7e-28 Score=166.47 Aligned_cols=75 Identities=48% Similarity=0.851 Sum_probs=69.6
Q ss_pred hhccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhc-CcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 10 QLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCT-GEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 10 ~~~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~-g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
++.++.+.+|||||.++++..|||+|+||++.+||||+||++||+ +..+.+ |+|+.||||+|+|||||||++.+
T Consensus 33 ~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-----Y~gS~FhRVi~nfmIQGGd~t~g 107 (217)
T KOG0880|consen 33 EPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-----YKGSKFHRVIPNFMIQGGDFTKG 107 (217)
T ss_pred CCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-----cCCceeeeeecCceeecCccccC
Confidence 445678999999999999999999999999999999999999999 666666 99999999999999999999997
Q ss_pred C
Q psy8675 89 S 89 (92)
Q Consensus 89 ~ 89 (92)
+
T Consensus 108 ~ 108 (217)
T KOG0880|consen 108 D 108 (217)
T ss_pred C
Confidence 4
>PTZ00221 cyclophilin; Provisional
Back Show alignment and domain information
Probab=99.92 E-value=3e-25 Score=158.76 Aligned_cols=86 Identities=37% Similarity=0.621 Sum_probs=74.4
Q ss_pred cHHHHHhhh---ccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCC---CCcccccCCeEEEEec
Q psy8675 3 TWNQIQSQL---RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRD---AVPIGFKGASFHRVIK 76 (92)
Q Consensus 3 ~~~~~~~~~---~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~---~~~~~Y~g~~f~rvi~ 76 (92)
.|++++.+. ....+++||||+++++.++|||+||||.+.||+||+||++||+|+.+.+ +.++.|+++.||||++
T Consensus 36 ~w~~~~~~~~~~~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~ 115 (249)
T PTZ00221 36 EWENYQKSHRMKEEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDR 115 (249)
T ss_pred eccchhhccccccCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeC
Confidence 688888763 3466899999999999999999999999999999999999999877532 4456799999999998
Q ss_pred C-cEEEecCCCCC
Q psy8675 77 D-FMIQGGDFVNV 88 (92)
Q Consensus 77 ~-~~iqgGD~~~~ 88 (92)
+ ++||+||+...
T Consensus 116 ~~f~iqgGD~~~~ 128 (249)
T PTZ00221 116 NNNIIVLGELDSF 128 (249)
T ss_pred CCCEEEeCCCCCC
Confidence 6 89999998754
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Back Show alignment and domain information
Probab=99.92 E-value=8.5e-25 Score=150.71 Aligned_cols=76 Identities=66% Similarity=1.234 Sum_probs=67.1
Q ss_pred ccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 12 ~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
.+..+++||||++++++..|||+||||.+.||+||+||++||++++...+.+++|+++.||||+|+|+|||||+..
T Consensus 14 ~~~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~ 89 (186)
T PLN03149 14 PNPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLK 89 (186)
T ss_pred CCCCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCccc
Confidence 3455789999999999999999999999999999999999999876433445669999999999999999999853
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain
Back Show alignment and domain information
Probab=99.91 E-value=6.8e-24 Score=143.31 Aligned_cols=71 Identities=63% Similarity=1.178 Sum_probs=62.5
Q ss_pred CeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 17 ~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
|+||||++++++..|+|+||||.+.||+||+||++||++..+.+.+...|+++.||||+|+|+|||||+..
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~ 71 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTR 71 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccC
Confidence 68999999999999999999999999999999999999755422233449999999999999999999764
This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
>PTZ00060 cyclophilin; Provisional
Back Show alignment and domain information
Probab=99.90 E-value=1.1e-23 Score=144.68 Aligned_cols=76 Identities=49% Similarity=0.909 Sum_probs=65.7
Q ss_pred ccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccC-CCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRR-DAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 12 ~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~-~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
++..+|+||||+++++++.|+|+||||.+.||+||+||++||++.... .++...|+++.||||+|+++|||||+..
T Consensus 11 ~~~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~ 87 (183)
T PTZ00060 11 EMSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITN 87 (183)
T ss_pred ccCCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccC
Confidence 445689999999999999999999999999999999999999975421 1233459999999999999999999864
>KOG0111|consensus
Back Show alignment and domain information
Probab=99.88 E-value=8e-24 Score=149.27 Aligned_cols=71 Identities=52% Similarity=0.907 Sum_probs=68.6
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
..+|.||+|+.|++...|||+++|..|++|+|++||+.||+|+.|++ |+|++||||||.||+||||++++|
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-----ykgssfhriip~fmcqggdftn~n 204 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-----YKGSSFHRIIPKFMCQGGDFTNGN 204 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-----ccccchhhhhhhhhccCCccccCC
Confidence 45899999999999999999999999999999999999999999988 999999999999999999999987
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=99.88 E-value=6.3e-23 Score=138.40 Aligned_cols=54 Identities=46% Similarity=0.756 Sum_probs=51.5
Q ss_pred CeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 27 ATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 27 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
.+..|+|+||||.+.||+||+||++||+.++ |+|+.||||||+|||||||++.+
T Consensus 5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~--------Ydg~~FHRVi~~FmiQgGd~~~~ 58 (158)
T COG0652 5 ETNKGDITIELYPDKAPKTVANFLQLVKEGF--------YDGTIFHRVIPGFMIQGGDPTGG 58 (158)
T ss_pred eccCCCEEEEECCCcCcHHHHHHHHHHHcCC--------CCCceEEEeecCceeecCCCCCC
Confidence 3679999999999999999999999999888 99999999999999999999987
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Back Show alignment and domain information
Probab=99.82 E-value=3.4e-20 Score=128.21 Aligned_cols=62 Identities=34% Similarity=0.697 Sum_probs=55.4
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
+..++|.+++ ..|+|+||||.+.||+||+||++||+.++ |+|+.||||+|+|+|||||+...
T Consensus 26 ~~~~~v~l~T-----~~G~i~ieL~~~~aP~t~~NF~~L~~~g~--------Ydg~~FhRvi~~f~iQgG~~~~~ 87 (190)
T PRK10903 26 KGDPHVLLTT-----SAGNIELELNSQKAPVSVKNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFTEQ 87 (190)
T ss_pred CCCcEEEEEe-----ccccEEEEEeCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEeCCceEEeCCcCCC
Confidence 3456777764 49999999999999999999999999988 99999999999999999997653
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain
Back Show alignment and domain information
Probab=99.82 E-value=2e-20 Score=124.69 Aligned_cols=52 Identities=42% Similarity=0.707 Sum_probs=49.5
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
|..|+|+||||.+.||+||+||++||++++ |+++.||||+|+|+|||||+..
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~Rvi~~f~iq~Gd~~~ 55 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHARNGY--------YNNTIFHRVIKGFMIQTGDPTG 55 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhhcCC--------cCCcEEEEEcCCcEEEecccCC
Confidence 569999999999999999999999999988 9999999999999999999864
This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)
Back Show alignment and domain information
Probab=99.82 E-value=2.9e-20 Score=125.86 Aligned_cols=53 Identities=32% Similarity=0.606 Sum_probs=50.2
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
|..|+|+||||.+.||+||+||++||++++ |+++.||||+|+|+|||||+...
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~--------Y~g~~fhrvi~~f~iQgGd~~~~ 56 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCKLKY--------YNFCLFYNVQKDFIAQTGDPTGT 56 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHhcCC--------cCCCEEEEEeCCceEEECCcCCC
Confidence 569999999999999999999999999988 99999999999999999999753
This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Back Show alignment and domain information
Probab=99.82 E-value=4.6e-20 Score=124.98 Aligned_cols=53 Identities=42% Similarity=0.817 Sum_probs=50.0
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
|..|+|+|+||.+.||+||+||++||+.++ |+++.||||+|+|+|||||+..+
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Yd~~~fhRvi~~f~iQgGd~~~~ 58 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQGGGFEPG 58 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEecCcEEEeCCcCCC
Confidence 569999999999999999999999999988 99999999999999999997643
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain
Back Show alignment and domain information
Probab=99.81 E-value=5.2e-20 Score=123.97 Aligned_cols=52 Identities=44% Similarity=0.843 Sum_probs=49.6
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
|+.|+|+||||.+.||+||+||++||+.++ |+++.||||+|+++|||||+..
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~rv~~~~~iq~Gd~~~ 57 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCKKGY--------YDGTIFHRSIRNFMIQGGDPTG 57 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHhcCc--------cCCcEEEEEeCCcEEEecccCC
Confidence 569999999999999999999999999888 9999999999999999999875
This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like
Back Show alignment and domain information
Probab=99.81 E-value=5.2e-20 Score=123.34 Aligned_cols=52 Identities=44% Similarity=0.839 Sum_probs=49.7
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
|..|+|+||||.+.||+||+||++||++++ |+++.||||+|+|+|||||+.+
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~rv~~~f~iq~Gd~~~ 58 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCASGY--------YNGCIFHRNIKGFMVQTGDPTG 58 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHhcCc--------cCCcEEEEeCCCCEEEccccCC
Confidence 569999999999999999999999999988 9999999999999999999875
Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16
Back Show alignment and domain information
Probab=99.81 E-value=8.6e-20 Score=124.19 Aligned_cols=61 Identities=33% Similarity=0.644 Sum_probs=54.7
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
+..-+|.+++ ..|+|+||||.+.+|+||+||++||+.++ |+++.||||+|+|+|||||+.+
T Consensus 3 ~~~~~v~i~T-----s~G~i~ieL~~~~~P~t~~nF~~L~~~~~--------Y~~~~f~Rvi~~f~iQgGd~~~ 63 (171)
T cd01925 3 PTTGKVILKT-----TAGDIDIELWSKEAPKACRNFIQLCLEGY--------YDNTIFHRVVPGFIIQGGDPTG 63 (171)
T ss_pred CcccEEEEEE-----ccccEEEEEeCCCChHHHHHHHHHHhcCC--------CCCCEEEEEcCCcEEEccccCC
Confidence 3345677774 49999999999999999999999999988 9999999999999999999864
C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E
Back Show alignment and domain information
Probab=99.81 E-value=5.1e-20 Score=123.57 Aligned_cols=53 Identities=42% Similarity=0.779 Sum_probs=50.2
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
|..|+|+||||.+.||+||+||++||+.++ |+++.||||+|+|+|||||+...
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Yd~~~fhRvi~~f~iQ~Gd~~~~ 56 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRKGF--------YDNTIFHRVISGFVIQGGGFTPD 56 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhcCC--------CCCCEEEEEeCCcEEEeCCCCCC
Confidence 569999999999999999999999999988 99999999999999999998754
coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2
Back Show alignment and domain information
Probab=99.81 E-value=5.1e-20 Score=122.56 Aligned_cols=52 Identities=44% Similarity=0.843 Sum_probs=49.7
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVN 87 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~ 87 (92)
|+.|+|+||||.+.||+||+||++||+.++ |+++.||||+|+|+|||||+.+
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~--------Y~~~~f~Rvi~~f~iq~Gd~~~ 55 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAKRGY--------YNGTIFHRLIKDFMIQGGDPTG 55 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHhcCC--------cCCcEEEEEcCCcEEEecccCC
Confidence 669999999999999999999999999988 9999999999999999999864
These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
>KOG0881|consensus
Back Show alignment and domain information
Probab=99.81 E-value=1.7e-20 Score=122.80 Aligned_cols=62 Identities=39% Similarity=0.777 Sum_probs=57.3
Q ss_pred CCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 15 NNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 15 ~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
.-|.|+++.+ +|.|++|||-+.+|+||+||.+|++.++ |+|..|||||++|||||||+++..
T Consensus 8 q~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrgY--------Yn~v~FHRii~DFmiQGGDPTGTG 69 (164)
T KOG0881|consen 8 QPPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRGY--------YNGVIFHRIIKDFMIQGGDPTGTG 69 (164)
T ss_pred CCCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhccc--------ccceeeeehhhhheeecCCCCCCC
Confidence 3478888855 9999999999999999999999999999 999999999999999999999754
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms
Back Show alignment and domain information
Probab=99.79 E-value=5.4e-19 Score=117.27 Aligned_cols=60 Identities=48% Similarity=0.952 Sum_probs=55.2
Q ss_pred EEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 20 FFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 20 ~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
|+++++++ .|+|+||||.+.||++|+||++||+.+. |+++.|||++|+++||+||+...+
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~ri~~~~~i~~G~~~~~~ 60 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSGF--------YDGTKFHRIIPNFVIQGGDPTGNG 60 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTTS--------STTEBEEEEETTTEEEESSTTTSS
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcccc--------cCCceeecccccceeeeeeccCCC
Confidence 78888655 9999999999999999999999999877 999999999999999999987653
It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40
Back Show alignment and domain information
Probab=99.79 E-value=2.7e-19 Score=122.42 Aligned_cols=54 Identities=33% Similarity=0.494 Sum_probs=50.9
Q ss_pred CeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 27 ATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 27 ~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
.|..|+|+||||.+.||+||+||++||+.++ |+++.||||+|+|||||||+...
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~--------Ydg~~FhRVi~~fviQgGdp~~~ 56 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGF--------YDGMEFHRVEGGFVVQTGDPQGK 56 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCC--------cCCCEEEEecCCcEEEecCCCCC
Confidence 3678999999999999999999999999888 99999999999999999999755
Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
>KOG0865|consensus
Back Show alignment and domain information
Probab=99.77 E-value=1.6e-19 Score=122.73 Aligned_cols=70 Identities=56% Similarity=1.031 Sum_probs=65.1
Q ss_pred CCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEE---EecCcEEEecCCCCCC
Q psy8675 15 NNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR---VIKDFMIQGGDFVNVS 89 (92)
Q Consensus 15 ~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~r---vi~~~~iqgGD~~~~~ 89 (92)
.+|.||+|++++++++||+.++||.|.+|+|+|||..||+|+++.+ |+++.||| .+++||+||||++.+|
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-----yk~s~fhr~~~~~~~fm~qggDft~hn 74 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-----YKGSCFHRLIPIIPGFMCQGGDFTCHN 74 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-----cccchhhhccccccceeeccCcccccC
Confidence 4799999999999999999999999999999999999999988777 99999999 3457999999999886
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases
Back Show alignment and domain information
Probab=99.75 E-value=2.3e-18 Score=113.37 Aligned_cols=54 Identities=50% Similarity=0.900 Sum_probs=50.5
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
|..|+|+||||.+.+|++|+||++||++++ |+++.|||++|+++||+||+....
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~--------Y~~~~f~rv~~~~~iq~Gd~~~~~ 57 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARGGF--------YDGTTFHRVIPGFMIQGGDPTGTG 57 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhcCC--------cCCCEEEEEeCCCeEEECCCCCCC
Confidence 457999999999999999999999999988 999999999999999999987654
This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
>KOG0885|consensus
Back Show alignment and domain information
Probab=99.69 E-value=2.5e-17 Score=122.88 Aligned_cols=66 Identities=29% Similarity=0.598 Sum_probs=60.0
Q ss_pred ccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCCC
Q psy8675 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 90 (92)
Q Consensus 12 ~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~~ 90 (92)
.++.+-+|.+..+ .|+|.|||++..||++|.||++||..++ |+|+.|||++|+|.+||||++...+
T Consensus 8 EP~ttgkvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGegy--------y~nt~fhrlvp~f~~Qggdp~~~gt 73 (439)
T KOG0885|consen 8 EPPTTGKVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEGY--------YDNTEFHRLVPGFLVQGGDPTGTGT 73 (439)
T ss_pred CCCccceEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhcc--------ccCceeeeeccchhcccCCCCCCCC
Confidence 4566678888755 9999999999999999999999999998 9999999999999999999998765
>KOG0883|consensus
Back Show alignment and domain information
Probab=99.68 E-value=9.5e-18 Score=125.95 Aligned_cols=62 Identities=34% Similarity=0.681 Sum_probs=55.9
Q ss_pred CeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 17 ~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
.+-|..+. +..|.|-+||++|.+|++|+||+.||+.++ |+++.|||.|++|||||||+++..
T Consensus 276 kkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~gY--------Ynnt~FHRsIrnFmiQGGDPTGTG 337 (518)
T KOG0883|consen 276 KKGYVRLV---TNHGPLNLELHCDYAPRACENFITLCKNGY--------YNNTIFHRSIRNFMIQGGDPTGTG 337 (518)
T ss_pred ccceEEEe---ccCCceeeEeecCcchHHHHHHHHHHhccc--------ccchHHHHHHHHHeeeCCCCCCCC
Confidence 34466655 668999999999999999999999999999 999999999999999999999864
>KOG0882|consensus
Back Show alignment and domain information
Probab=99.68 E-value=1.9e-17 Score=125.96 Aligned_cols=67 Identities=30% Similarity=0.517 Sum_probs=59.2
Q ss_pred CCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCCC
Q psy8675 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVSM 90 (92)
Q Consensus 16 ~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~~ 90 (92)
.+++.=+-.|-.|..|+|.|.||+++||||||||..-|+.++ |+|..|||||++||||+||+++..+
T Consensus 399 g~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngy--------y~~~~fhriik~fmiqtgdp~g~gt 465 (558)
T KOG0882|consen 399 GNKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGY--------YDNHTFHRIIKGFMIQTGDPLGDGT 465 (558)
T ss_pred CceecccceEEEecccceEEEecccccchhhhhhhccccCcc--------ccCcchHHhhhhheeecCCCCCCCC
Confidence 455555555666779999999999999999999999999998 9999999999999999999998764
>KOG0884|consensus
Back Show alignment and domain information
Probab=99.59 E-value=1.3e-15 Score=99.41 Aligned_cols=54 Identities=41% Similarity=0.842 Sum_probs=50.7
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
+..|+|.||||.+.+|+|||||+.||...+ |++|.|||-+|+||+|+||++...
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~~~~~--------~n~~~~~~~~~~f~v~~~~~~~tg 60 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALCASDY--------YNGCIFHRNIKGFMVQTGDPTHTG 60 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHhhhhh--------ccceeecCCCCCcEEEeCCCCCCC
Confidence 558999999999999999999999999988 999999999999999999998653
>KOG0415|consensus
Back Show alignment and domain information
Probab=99.51 E-value=1.9e-14 Score=107.42 Aligned_cols=54 Identities=31% Similarity=0.622 Sum_probs=51.4
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
|.+|+|+|+||.+.+|+||.||++||+..+ |+.|.||.|.++|.+|.||+++..
T Consensus 7 TtlGDlvIDLf~~erP~~clNFLKLCk~KY--------YN~clfh~vq~~f~aQTGDPtGtG 60 (479)
T KOG0415|consen 7 TTLGDLVIDLFVKERPRTCLNFLKLCKIKY--------YNFCLFHTVQRDFTAQTGDPTGTG 60 (479)
T ss_pred eecccEEeeeecccCcHHHHHHHHHHhHhh--------cccceeeeccccceeecCCCCCCC
Confidence 559999999999999999999999999999 999999999999999999999854
>PRK00969 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=88.53 E-value=0.42 Score=37.85 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred eeEEEEecCCCChhhHHHHHHhhc
Q psy8675 31 GRMIFELFADVVPKTSENFRQFCT 54 (92)
Q Consensus 31 G~i~ieL~~~~~P~t~~nF~~l~~ 54 (92)
.-|.|+||.+.||+|+.-|+++.-
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~tG 401 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVTG 401 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhcC
Confidence 358999999999999999998764
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3
Back Show alignment and domain information
Probab=88.03 E-value=0.47 Score=37.51 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.1
Q ss_pred eeEEEEecCCCChhhHHHHHHhhc
Q psy8675 31 GRMIFELFADVVPKTSENFRQFCT 54 (92)
Q Consensus 31 G~i~ieL~~~~~P~t~~nF~~l~~ 54 (92)
.-|.|+||.+.||+|+.-|+++.-
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~tG 398 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFTG 398 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhcC
Confidence 357999999999999999998763
A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=85.00 E-value=0.77 Score=35.74 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred eEEEEecCCCChhhHHHHHHhhc
Q psy8675 32 RMIFELFADVVPKTSENFRQFCT 54 (92)
Q Consensus 32 ~i~ieL~~~~~P~t~~nF~~l~~ 54 (92)
-|.||||.+.||+++.-|+++..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 48999999999999999998764
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins
Back Show alignment and domain information
Probab=84.48 E-value=1.4 Score=29.66 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.6
Q ss_pred eeEEEEecCCCChhhHHHHHHhh
Q psy8675 31 GRMIFELFADVVPKTSENFRQFC 53 (92)
Q Consensus 31 G~i~ieL~~~~~P~t~~nF~~l~ 53 (92)
-.++.+|..|.||+||+-|.+.-
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH-
T ss_pred eEEEEEEcccCChHHHHHHHHhC
Confidence 36789999999999999998764
The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 92
d1a33a_ 174
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (
6e-21 d1ihga2 195
b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain
8e-21 d1z81a1 186
b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas
3e-20 d1qoia_ 173
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom
6e-20 d2z6wa1 164
b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c
1e-18 d2cfea1 162
b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s
3e-17 d2igva1 172
b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno
4e-17 d1h0pa_ 182
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd
4e-17 d1qnga_ 170
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
5e-17 d2r99a1 161
b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
4e-16 d2rmca_ 182
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
4e-16 d1xo7a_ 166
b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom
1e-15 d1xwna1 166
b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome
2e-13 d2c3ba1 171
b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper
4e-12 d1zkca1 178
b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso
5e-12 d1w74a_ 171
b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase
6e-11 d2a2na1 164
b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma
7e-09 d1v9ta_ 166
b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase
2e-08 d2ok3a1 159
b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B
4e-08 d1lopa_ 164
b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase
2e-07 d2fu0a1 155
b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {
8e-06 d2b71a1 169
b.62.1.1 (A:23-191) Cyclophilin-like protein PY006
2e-04
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174
Back Hide information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]
Score = 79.5 bits (195), Expect = 6e-21
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCT---GEFRRDAVPIGFKGAS 70
++ VF D+++ GR++ EL+ D+ P+T NF CT G + P+ +KG++
Sbjct: 1 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 60
Query: 71 FHRVIKDFMIQGGDFVN 87
FHRVIK+FMIQGGDF
Sbjct: 61 FHRVIKNFMIQGGDFTK 77
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.5 bits (195), Expect = 8e-21
Identities = 46/83 (55%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Query: 8 QSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE---FRRDAVPI 64
Q++ N +NP VFFD+ +G +GR++ ELFAD+VPKT+ENFR CTGE P+
Sbjct: 6 QAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPL 65
Query: 65 GFKGASFHRVIKDFMIQGGDFVN 87
FKG FHR+IK FMIQGGDF N
Sbjct: 66 HFKGCPFHRIIKKFMIQGGDFSN 88
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]
Score = 78.0 bits (191), Expect = 3e-20
Identities = 47/79 (59%), Positives = 63/79 (79%)
Query: 7 IQSQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGF 66
+ + L N +NPVVF DI++G +G+ FELF ++VPKTSENFRQFCTGE++ + +P+G+
Sbjct: 7 LSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGY 66
Query: 67 KGASFHRVIKDFMIQGGDF 85
K FHRVIK+FMIQGGDF
Sbjct: 67 KNTIFHRVIKEFMIQGGDF 85
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
Score = 76.8 bits (188), Expect = 6e-20
Identities = 57/70 (81%), Positives = 65/70 (92%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NPVVFFD+S+G E+GRM ELFADVVPKT+ENFRQFCTGEFR+D VPIG+KG++FHRVI
Sbjct: 6 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI 65
Query: 76 KDFMIQGGDF 85
KDFMIQGGDF
Sbjct: 66 KDFMIQGGDF 75
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.3 bits (179), Expect = 1e-18
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP+V+ D+ +GR++ EL ADVVPKT+ENFR CTGE G+KG++FHRVI
Sbjct: 2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-----GFGYKGSTFHRVI 56
Query: 76 KDFMIQGGDFVN 87
FM Q GDF N
Sbjct: 57 PSFMCQAGDFTN 68
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]
Score = 69.7 bits (170), Expect = 3e-17
Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
VFFDI+ +G + F+LF DVVPKT+ NFR CTGE G+ G+ FHRVI DF
Sbjct: 4 VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEK-----GFGYAGSHFHRVIPDF 58
Query: 79 MIQGGDFVN 87
M+QGGDF
Sbjct: 59 MLQGGDFTA 67
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]
Score = 69.5 bits (169), Expect = 4e-17
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE--FRRDAVPIGFKGASFHR 73
VFFDI++G GR++ EL+ DVVPKT+ NFR CTGE + P+ FKG+ FHR
Sbjct: 3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62
Query: 74 VIKDFMIQGGDFVN 87
+I +FMIQGGDF
Sbjct: 63 IIPNFMIQGGDFTR 76
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]
Score = 69.5 bits (169), Expect = 4e-17
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 19 VFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDF 78
V+FD+ +G IGR++ LF VPKT+ NF + + G+ G+ FHRVI DF
Sbjct: 9 VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELA-----KKPKGEGYPGSKFHRVIADF 63
Query: 79 MIQGGDFVN 87
MIQGGDF
Sbjct: 64 MIQGGDFTR 72
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]
Score = 69.1 bits (168), Expect = 5e-17
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGE-FRRDAVPIGFKGASFHRV 74
VFFDIS+ + GR+IFELF+D+ P+T ENFR CTGE + +K + FHR+
Sbjct: 3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRI 62
Query: 75 IKDFMIQGGDFVN 87
I FM QGGD N
Sbjct: 63 IPQFMCQGGDITN 75
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (162), Expect = 4e-16
Identities = 37/72 (51%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
NP V+ DI +G GR+ L +DVVP T+ENFR CT E FKG+SFHR+I
Sbjct: 1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-----FKGSSFHRII 55
Query: 76 KDFMIQGGDFVN 87
FM QGGDF N
Sbjct: 56 PQFMCQGGDFTN 67
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]
Score = 67.2 bits (163), Expect = 4e-16
Identities = 38/70 (54%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
VFFD+ +G ++GR++ LF +VVPKT ENF TGE G+KG+ FHRVI
Sbjct: 7 TDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEK-----GYGYKGSIFHRVI 61
Query: 76 KDFMIQGGDF 85
KDFMIQGGDF
Sbjct: 62 KDFMIQGGDF 71
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]
Score = 65.3 bits (158), Expect = 1e-15
Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
V+FDI++G +GR++ LF + VPKT ENF+Q +GE G+KG+ FHRVI
Sbjct: 5 TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGEN-----GFGYKGSIFHRVI 59
Query: 76 KDFMIQGGDFVN 87
++FMIQGGDF N
Sbjct: 60 RNFMIQGGDFTN 71
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (143), Expect = 2e-13
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFH 72
+ P V+ + T +G ++ EL+ PKT +NF + + + G FH
Sbjct: 8 SWQPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKFH 54
Query: 73 RVIKDFMIQGGDFVN 87
R+IKDFMIQGGD
Sbjct: 55 RIIKDFMIQGGDPTG 69
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]
Score = 56.4 bits (135), Expect = 4e-12
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 10/74 (13%)
Query: 19 VFFDIS-----VGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
VFFD+ T++GR++F LF VPKT++NFR+ C ++ ++FHR
Sbjct: 4 VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-----YRESTFHR 58
Query: 74 VIKDFMIQGGDFVN 87
+I +FMIQGGDF
Sbjct: 59 IIPNFMIQGGDFTR 72
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (135), Expect = 5e-12
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T G + EL D+ PKT ENF + C + + G FHR I++F+IQGGD
Sbjct: 7 TNKGDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGGDP 56
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 53.3 bits (127), Expect = 6e-11
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGE-------FRRDAVPIGFKGASFHRVIKDFMI 80
T G + LF + PKT NF G + GA FHRVI+ FMI
Sbjct: 10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMI 69
Query: 81 QGGDF 85
QGGD
Sbjct: 70 QGGDP 74
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 7e-09
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVI 75
P D ++ T +G + +LF PKT ENF + + G +FHR+I
Sbjct: 4 GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRII 55
Query: 76 KDFMIQGGDFVNVSM 90
K FMIQ GD M
Sbjct: 56 KGFMIQTGDPTGTGM 70
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Score = 46.5 bits (109), Expect = 2e-08
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHR 73
+ +P V T G + EL P + +NF + F + +FHR
Sbjct: 2 KGDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHR 48
Query: 74 VIKDFMIQGGDFVNVSM 90
VI FMIQGG F
Sbjct: 49 VIPGFMIQGGGFTEQMQ 65
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 4e-08
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T++G + E+F + PKT ENF C + + FHR IK FM+Q GD
Sbjct: 7 TDVGDIKIEVFCERTPKTCENFLALCASNYYNGCI--------FHRNIKGFMVQTGDP 56
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Score = 43.7 bits (102), Expect = 2e-07
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQ 81
T G ++ + F D P+T +NF +C F + FHRVI FMIQ
Sbjct: 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQ 51
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]
Score = 39.5 bits (91), Expect = 8e-06
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFC 53
T +G + LF KT +NF
Sbjct: 8 TTMGDIHISLFYKECKKTVQNFSVHS 33
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]
Score = 36.0 bits (82), Expect = 2e-04
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 28 TEIGRMIFELFADVVPKTSENFRQFCT-GEFRRDAVPIGFKGASFHRVIKDFMIQGGDF 85
T +G EL+ PKT NF C G + +GG
Sbjct: 23 TNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKS 81
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 92
d1z81a1 186
Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId
99.93 d2r99a1 161
Mitochondrial peptidyl-prolyl cis-trans isomerase,
99.92 d2z6wa1 164
Mitochondrial peptidyl-prolyl cis-trans isomerase,
99.91 d1qoia_ 173
Cyclophilin (eukaryotic) {Human (Homo sapiens), U4
99.91 d2igva1 172
Cyclophilin (eukaryotic) {Caenorhabditis elegans,
99.91 d1ihga2 195
Cyclophilin 40 isomerase domain {Cow (Bos taurus)
99.9 d1xo7a_ 166
Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId
99.9 d1h0pa_ 182
Cyclophilin (eukaryotic) {Caenorhabditis elegans,
99.9 d1a33a_ 174
Cyclophilin (eukaryotic) {Nematode (Brugia malayi)
99.9 d2rmca_ 182
Cyclophilin (eukaryotic) {Mouse (Mus musculus), va
99.89 d1qnga_ 170
Cyclophilin (eukaryotic) {Plasmodium falciparum [T
99.89 d2cfea1 162
Cyclophilin-like allergen Mal s 6 {Malassezia symp
99.89 d2c3ba1 171
Cyclophilin (eukaryotic) {Aspergillus fumigatus [T
99.86 d1v9ta_ 166
Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche
99.84 d1xwna1 166
Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
99.83 d2fu0a1 155
Putative cyclophilin PFE0505w {Plasmodium falcipar
99.8 d2ok3a1 159
Cyclophilin-like protein PPIL3B {Human (Homo sapie
99.79 d1lopa_ 164
Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche
99.78 d1zkca1 178
Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop
99.77 d2b71a1 169
Cyclophilin-like protein PY00693 {Plasmodium yoeli
99.76 d2a2na1 164
Peptidylprolyl isomerase domain and WD repeat-cont
99.76 d1w74a_ 171
Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob
99.73
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}
Back Hide information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]
Probab=99.93 E-value=1.1e-25 Score=151.73 Aligned_cols=79 Identities=61% Similarity=1.153 Sum_probs=72.6
Q ss_pred hccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 11 LRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 11 ~~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
+.++.||+||||++++++++|+|+||||.+.||+||+||++||+++++...+.++|+|+.|||+++++++|+||....+
T Consensus 11 ~~~~~np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~ 89 (186)
T d1z81a1 11 LTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 89 (186)
T ss_dssp SSSTTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSS
T ss_pred ccCCCCCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccC
Confidence 4567799999999999999999999999999999999999999998876677788999999999999999999987654
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=8.5e-25 Score=144.53 Aligned_cols=69 Identities=54% Similarity=0.889 Sum_probs=63.4
Q ss_pred CCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 16 NPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 16 ~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
||+|||||+++++++|+|+||||.+.||+||+||++||++.++.. |+++.||||+|+++||+||+...+
T Consensus 1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~-----Y~g~~f~Rv~~~~~iq~G~~~~~~ 69 (161)
T d2r99a1 1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-----FKGSSFHRIIPQFMCQGGDFTNHN 69 (161)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-----STTCBEEEEETTTEEEECCTTTSS
T ss_pred CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccc-----cCCcEEEEEEEeeeEEeeeccCCC
Confidence 689999999999999999999999999999999999998754333 999999999999999999998754
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.4e-24 Score=142.46 Aligned_cols=70 Identities=53% Similarity=0.956 Sum_probs=64.3
Q ss_pred CCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 15 NNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 15 ~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
.||+|||||+++++++|+|+||||.+.||+||+||++||+++++.. |+++.||||++++++|+||+...+
T Consensus 1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~-----Y~g~~f~rv~~~~~iq~g~~~~~~ 70 (164)
T d2z6wa1 1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-----YKGSTFHRVIPSFMCQAGDFTNHN 70 (164)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-----STTCBEEEEETTTEEEECCTTTSS
T ss_pred CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcc-----cCCcEEEEecccceEecCCccCCC
Confidence 4799999999999999999999999999999999999998875433 999999999999999999998653
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
Probab=99.91 E-value=1.8e-24 Score=143.81 Aligned_cols=78 Identities=76% Similarity=1.309 Sum_probs=70.2
Q ss_pred ccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 12 RNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 12 ~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
+++.||+|||||+++++++|+|+||||.+.||+||+||++||+.++....+.++|+++.|||+++++++|+||...+.
T Consensus 2 ~~~~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~ 79 (173)
T d1qoia_ 2 SSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 79 (173)
T ss_dssp CSCCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEETTEECSSTTCBCCEEETTTEEEECCTTTSS
T ss_pred CCCCCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccccCCCCCcCCcccceeccceeeccCCcccCC
Confidence 357899999999999999999999999999999999999999987644455566999999999999999999987654
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]
Probab=99.91 E-value=3.4e-24 Score=142.67 Aligned_cols=75 Identities=52% Similarity=0.979 Sum_probs=66.5
Q ss_pred CCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccC--CCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 15 NNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRR--DAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 15 ~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~--~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
.+|+||||++++++++|+|+||||.+.||+||+||++||++..+. ..+...|+++.||||+++++||+||...++
T Consensus 2 ~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~ 78 (172)
T d2igva1 2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGN 78 (172)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSS
T ss_pred CCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCC
Confidence 478999999999999999999999999999999999999986532 245556999999999999999999987654
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=5.2e-24 Score=144.41 Aligned_cols=80 Identities=56% Similarity=1.047 Sum_probs=70.4
Q ss_pred hhhccCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCC---CCcccccCCeEEEEecCcEEEecCC
Q psy8675 9 SQLRNQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRD---AVPIGFKGASFHRVIKDFMIQGGDF 85 (92)
Q Consensus 9 ~~~~~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~---~~~~~Y~g~~f~rvi~~~~iqgGD~ 85 (92)
+.++++.||+||||++++++.+|+|+||||.+.||+||+||++||+++.+.. .+...|+++.||||++++++|+||.
T Consensus 7 ~~~~~~~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~ 86 (195)
T d1ihga2 7 AKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDF 86 (195)
T ss_dssp SSSSCTTSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCT
T ss_pred CCCCCCCCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCc
Confidence 3456788999999999999999999999999999999999999999876432 3455699999999999999999998
Q ss_pred CCC
Q psy8675 86 VNV 88 (92)
Q Consensus 86 ~~~ 88 (92)
...
T Consensus 87 ~~~ 89 (195)
T d1ihga2 87 SNQ 89 (195)
T ss_dssp TTS
T ss_pred cCC
Confidence 754
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.90 E-value=5.8e-24 Score=140.77 Aligned_cols=72 Identities=49% Similarity=0.889 Sum_probs=66.8
Q ss_pred cCCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 13 NQNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 13 ~~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
++.+++|||||+++++++|+|+||||.+.||+||+||++||+++++.+ |+|+.|||++|++++|+||....+
T Consensus 2 p~~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~-----Y~g~~f~rv~~~~~iq~G~~~~~~ 73 (166)
T d1xo7a_ 2 PVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-----YKGSIFHRVIRNFMIQGGDFTNFD 73 (166)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-----STTCBEEEEETTTEEEECCTTTSS
T ss_pred CCCCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhccccccc-----ccCcEEEEEcCCCEEEeCCCCCCC
Confidence 357889999999999999999999999999999999999999987665 999999999999999999988654
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]
Probab=99.90 E-value=2.1e-24 Score=144.79 Aligned_cols=71 Identities=42% Similarity=0.798 Sum_probs=64.5
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
+.+.+|||||+++++++|+|+||||.+.||+||+||++||+++++.. |+++.||||+|+|+||+||...++
T Consensus 4 ~~t~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~-----y~g~~f~rv~~~~~iq~G~~~~~~ 74 (182)
T d1h0pa_ 4 KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-----YPGSKFHRVIADFMIQGGDFTRGD 74 (182)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTS-----STTCBCCEEETTTEEEECCTTTSS
T ss_pred CCCCeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCC-----cCCceEEEEEecceEEcCCCCCCC
Confidence 35779999999999999999999999999999999999998764333 999999999999999999998764
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]
Probab=99.90 E-value=1.1e-23 Score=139.98 Aligned_cols=75 Identities=43% Similarity=0.871 Sum_probs=66.9
Q ss_pred CCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCC---CCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 15 NNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRD---AVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 15 ~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~---~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
.+++|||||+++++++|+|+||||.+.||+||+||++||+++.+.+ .+...|+++.||||++++++|+||...++
T Consensus 2 ~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~ 79 (174)
T d1a33a_ 2 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGD 79 (174)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred CCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCC
Confidence 5789999999999999999999999999999999999999875432 34556999999999999999999998764
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]
Probab=99.89 E-value=1.3e-23 Score=141.09 Aligned_cols=71 Identities=52% Similarity=0.920 Sum_probs=64.7
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
+.+.+|||||+++++++|+|+||||.+.||+||+||++||++++... |+++.|||+++++++|+||+...+
T Consensus 5 ~~t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~-----Y~g~~f~rv~~~~~iq~G~~~~~~ 75 (182)
T d2rmca_ 5 SVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-----YKGSIFHRVIKDFMIQGGDFTARD 75 (182)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCS-----STTCBEEEEETTTEEEECCCSSSS
T ss_pred ccCCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCcc-----ccCceeeeeecCceEEcCCCCCCC
Confidence 45788999999999999999999999999999999999998875433 999999999999999999987654
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]
Probab=99.89 E-value=2.3e-23 Score=138.25 Aligned_cols=75 Identities=48% Similarity=0.877 Sum_probs=66.3
Q ss_pred CCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccC-CCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 15 NNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRR-DAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 15 ~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~-~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
.+++|||||+++++++|+|+||||.+.||+||+||++||++.... ..+...|+++.||||+++++||+||+..++
T Consensus 2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~ 77 (170)
T d1qnga_ 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGN 77 (170)
T ss_dssp CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSS
T ss_pred CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCccCcccceEEEeCceEEecCccCCC
Confidence 578999999999999999999999999999999999999976532 234455999999999999999999998764
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]
Probab=99.89 E-value=2.3e-23 Score=137.61 Aligned_cols=68 Identities=53% Similarity=0.950 Sum_probs=63.5
Q ss_pred CeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 17 ~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
..||||++++++++|+|+||||.+.||+||+||++||+++.+.. |+++.||||+|+++||+||+..++
T Consensus 2 ~~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~-----Y~g~~f~rv~~~~~iq~G~~~~~~ 69 (162)
T d2cfea1 2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-----YAGSHFHRVIPDFMLQGGDFTAGN 69 (162)
T ss_dssp CCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-----STTCBCCEEETTTEEEECCTTTSS
T ss_pred CeEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCCc-----cCCCEEEEEEecceEecCCCCCCC
Confidence 36999999999999999999999999999999999999987655 999999999999999999998764
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]
Probab=99.86 E-value=4.6e-22 Score=132.25 Aligned_cols=68 Identities=44% Similarity=0.916 Sum_probs=59.0
Q ss_pred CeEEEEEe-----eCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 17 PVVFFDIS-----VGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 17 ~~v~~di~-----~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
++|||||+ ++.|..|+|+||||.+.||+||+||++||+++++.+ |+++.||||+|++++|+||+..++
T Consensus 2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~-----y~~~~f~ri~~~~~iq~G~~~~~~ 74 (171)
T d2c3ba1 2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-----YRESTFHRIIPNFMIQGGDFTRGN 74 (171)
T ss_dssp CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTS-----STTCBCCEEETTTEEEECC-----
T ss_pred CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhccccc-----ccCceeeEEEEEEeeEcCCccCCC
Confidence 68999998 677899999999999999999999999999887665 999999999999999999987654
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=2.4e-21 Score=127.96 Aligned_cols=63 Identities=35% Similarity=0.677 Sum_probs=58.8
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
..+|+|.|+++ .|+|+||||.+.||+||+||++||++++ |+|+.||||+++|++|+||.....
T Consensus 2 ~g~~~V~l~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~~~--------Y~g~~fhRv~~~~~iq~G~~~~~~ 64 (166)
T d1v9ta_ 2 KGDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSGF--------YNNTTFHRVIPGFMIQGGGFTEQM 64 (166)
T ss_dssp CCSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTTT--------TTTCBEEEEETTTEEEESSBCTTC
T ss_pred CCCCEEEEEEC-----CeeEEEEEeCCCChHHHHHHHHHhhCCc--------cccceeeEEEEEeecccCCcCCcc
Confidence 56889999966 8999999999999999999999999998 999999999999999999987664
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=5e-21 Score=126.62 Aligned_cols=62 Identities=40% Similarity=0.805 Sum_probs=57.3
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
..+|+|+|+++ +|+|+||||.+.||+||+||++||+.++ |+++.|||++++++||+||+...
T Consensus 9 ~~~p~v~~~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~g~--------Y~g~~f~rv~~~~~iq~Gd~~~~ 70 (166)
T d1xwna1 9 WQPPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRGY--------YNGTKFHRIIKDFMIQGGDPTGT 70 (166)
T ss_dssp CCCCEEEEEES-----SCEEEEEECTTTCHHHHHHHHHHHHHTS--------STTCCEEEEETTTEEEECCSTTT
T ss_pred CCCCEEEEEEC-----ceeEEEEEcCCCChHHHHHHHHHHhcCC--------cCceeeeEEcccEEEEeCCCCCC
Confidence 44689999976 8999999999999999999999999988 99999999999999999998654
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]
Probab=99.80 E-value=5.1e-20 Score=120.25 Aligned_cols=54 Identities=35% Similarity=0.576 Sum_probs=50.8
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
|++|+|+||||.+.||+||+||++||++++ |+|+.||||++++++|+||+.+..
T Consensus 8 T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~--------Y~g~~f~rv~~~~~iq~Gd~~~~~ 61 (155)
T d2fu0a1 8 TTMGDIHISLFYKECKKTVQNFSVHSINGY--------YNNCIFHRVIKHFMVQTGDPSGDG 61 (155)
T ss_dssp ETTEEEEEEECTTTCHHHHHHHHHHHHTTT--------TTTCBCCEEETTTEEEECCTTSSS
T ss_pred EcccEEEEEEcCCCChHHHHHHhhHhhCCc--------cccceeeeeeecceeeccCCCCCC
Confidence 559999999999999999999999999988 999999999999999999998643
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=8.5e-20 Score=119.81 Aligned_cols=54 Identities=41% Similarity=0.826 Sum_probs=50.7
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
|.+|+|+||||.+.||+||+||++||++++ |+++.||||+++++||+||....+
T Consensus 7 T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~--------Y~~~~f~rv~~~~~iq~Gd~~~~~ 60 (159)
T d2ok3a1 7 TDVGDIKIEVFCERTPKTCENFLALCASNY--------YNGCIFHRNIKGFMVQTGDPTGTG 60 (159)
T ss_dssp ETTEEEEEEECTTTCHHHHHHHHHHHHTTT--------TTTCBCCEEETTTEEEECCTTSSS
T ss_pred eCCeEEEEEEcCCCChHHHHHHHHHHhhhc--------ccceeEecccCCeEEEeCCccccC
Confidence 558999999999999999999999999998 999999999999999999987553
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=6.9e-20 Score=120.66 Aligned_cols=53 Identities=42% Similarity=0.817 Sum_probs=49.8
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
|..|+|+||||.+.||+||+||++||+.++ |+|+.||||+++|++|+||+..+
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~l~~~g~--------Y~g~~fhrv~~~~~iq~G~~~~~ 58 (164)
T d1lopa_ 6 TNHGDIVIKTFDDKAPETVKNFLDYCREGF--------YNNTIFHRVINGFMIQGGGFEPG 58 (164)
T ss_dssp ETTEEEEEEECTTTSHHHHHHHHHHHHTTT--------TTTEECCEEETTTEEEESSEETT
T ss_pred eCCeEEEEEEcCCCCHHHHHHHHHHHHccC--------cCCceeeEEcCCceeeeeccccC
Confidence 559999999999999999999999999988 99999999999999999997644
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=5e-19 Score=118.10 Aligned_cols=53 Identities=43% Similarity=0.851 Sum_probs=50.3
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
|..|+|+||||.+.||+||+||++||++++ |+|+.||||+|++++|+||....
T Consensus 7 T~~G~i~IeL~~~~aP~tv~nF~~L~~~~~--------Y~g~~f~rv~~~~~iq~Gd~~~~ 59 (178)
T d1zkca1 7 TNKGDLNLELHCDLTPKTCENFIRLCKKHY--------YDGTIFHRSIRNFVIQGGDPTGT 59 (178)
T ss_dssp ETTEEEEEEECTTTSHHHHHHHHHHHHTTT--------TTTEEEEEEETTTEEEECCTTSS
T ss_pred eCCEEEEEEEcCCCChHHHHHHHHHHhcCC--------cCceEeeeccceeEEecCCccCC
Confidence 569999999999999999999999999988 99999999999999999998764
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]
Probab=99.76 E-value=3.5e-19 Score=117.93 Aligned_cols=60 Identities=37% Similarity=0.604 Sum_probs=53.8
Q ss_pred CeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 17 PVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 17 ~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
..|-++ |..|+|+||||.+.||+||+||++||+.++ |+++.|||+++++++||||.....
T Consensus 17 ~~V~l~-----T~~G~i~IeL~~d~aP~tv~nF~~L~~~g~--------Y~~~~f~rv~~~~~iq~g~~~~~~ 76 (169)
T d2b71a1 17 GYITIY-----TNLGDFEVELYWYHSPKTCLNFYTLCEMGF--------YDNTIFHRVIPNFVIQGGDPTGTG 76 (169)
T ss_dssp CEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTTT--------TTTEEEEEEETTTEEEEEETTSSS
T ss_pred cEEEEE-----eCceeEEEEEeCCCCcHHHHHHHHHhhCCc--------cceeeeccccceeeEecccccccc
Confidence 345555 449999999999999999999999999988 999999999999999999988754
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
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class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=6.7e-19 Score=115.55 Aligned_cols=63 Identities=35% Similarity=0.595 Sum_probs=56.1
Q ss_pred CCCCeEEEEEeeCCeEeeeEEEEecCCCChhhHHHHHHhhcCcccCCCCcccccCCeEEEEecCcEEEecCCCCCC
Q psy8675 14 QNNPVVFFDISVGATEIGRMIFELFADVVPKTSENFRQFCTGEFRRDAVPIGFKGASFHRVIKDFMIQGGDFVNVS 89 (92)
Q Consensus 14 ~~~~~v~~di~~~~~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~~~~~~Y~g~~f~rvi~~~~iqgGD~~~~~ 89 (92)
.....+.++ |..|+|+||||.+.||+||+||++||+.++ |+|+.|||+++++++|+||+....
T Consensus 7 ~~~~~a~~~-----T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~--------Y~g~~f~rv~~~~~iq~G~~~~~~ 69 (164)
T d2a2na1 7 RVSDSAIIH-----TSMGDIHTKLFPVECPKTVENFCVHSRNGY--------YNGHTFHRIIKGFMIQTGDPTGTG 69 (164)
T ss_dssp CCCSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHTTT--------TTTCBCCEEETTTEEEECCTTSSS
T ss_pred cccCEEEEE-----eceeEEEEEEcCCCChHHHHHHHHHHhCCC--------cccceeeEEeeeeeEeeccccccc
Confidence 444567777 459999999999999999999999999988 999999999999999999987553
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=4e-18 Score=112.57 Aligned_cols=61 Identities=39% Similarity=0.587 Sum_probs=52.5
Q ss_pred eEeeeEEEEecCCCChhhHHHHHHhhcCcccCC-------CCcccccCCeEEEEecCcEEEecCCCCC
Q psy8675 28 TEIGRMIFELFADVVPKTSENFRQFCTGEFRRD-------AVPIGFKGASFHRVIKDFMIQGGDFVNV 88 (92)
Q Consensus 28 ~~~G~i~ieL~~~~~P~t~~nF~~l~~g~~~~~-------~~~~~Y~g~~f~rvi~~~~iqgGD~~~~ 88 (92)
|..|+|+||||.+.||+||+||++||+++.+.+ .....|+++.|||+++++++||||+...
T Consensus 10 T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~~ 77 (171)
T d1w74a_ 10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGT 77 (171)
T ss_dssp ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSS
T ss_pred ECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccCC
Confidence 559999999999999999999999999875332 2334599999999999999999998754
