Psyllid ID: psy8693

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MYLLNTNANFIVNDRDQTWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDCSG
ccEEccccEEEEccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccc
cccEEcEcccccccccccccccccccccccHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccEcccccccccEcHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccccEEccccccccccccHHHHHHHHHHHHHHHHHcccccccEcccccccccccccccHcccccHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccEcccccccccEcEccccc
myllntnanfivndrdQTWDllhdkqdigagkgkyyavniplrdgmddesyeSIFVPIISKVMETFQPSAVVLQCgadsltgdrlgcfnltvrghgkcvefvkrynlpflmvggggytirnvsrcWTYETSVALGSEianelpyndyfeyfgpdfklhispsnmanqntPEYLEKIKTRLFENlrmlphapgvqvqvspiigpilwydpyqdigagkgkyyavniplrdgmddesyeSIFVPIISKVMETFQPSAVVLQCgadsltgdrlgcfnltvrdcsg
myllntnaNFIVNDRDQTWDLLHDkqdigagkgkYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADsltgdrlgcfnltvrdcsg
MYLLNTNANFIVNDRDQTWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDCSG
**LLNTNANFIVNDRDQTWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHISP*******TPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVR****
MYLLNTNANFIVNDRDQTWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDC**
MYLLNTNANFIVNDRDQTWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDCSG
MYLLNTNANFIVNDRDQTWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVR****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYLLNTNANFIVNDRDQTWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDCSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query282 2.2.26 [Sep-21-2011]
Q94517521 Histone deacetylase Rpd3 yes N/A 0.624 0.337 0.914 1e-94
P56517480 Histone deacetylase 1 OS= yes N/A 0.624 0.366 0.846 5e-88
O42227480 Probable histone deacetyl N/A N/A 0.624 0.366 0.835 8e-88
Q4QQW4482 Histone deacetylase 1 OS= yes N/A 0.624 0.365 0.835 2e-87
O09106482 Histone deacetylase 1 OS= yes N/A 0.624 0.365 0.835 2e-87
Q5RAG0482 Histone deacetylase 1 OS= yes N/A 0.624 0.365 0.835 2e-87
Q13547482 Histone deacetylase 1 OS= yes N/A 0.624 0.365 0.835 2e-87
Q32PJ8482 Histone deacetylase 1 OS= yes N/A 0.624 0.365 0.835 2e-87
Q91695480 Probable histone deacetyl N/A N/A 0.617 0.362 0.839 3e-80
P56519488 Histone deacetylase 2 OS= no N/A 0.656 0.379 0.798 4e-80
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2 Back     alignment and function desciption
 Score =  346 bits (887), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 161/176 (91%), Positives = 168/176 (95%)

Query: 24  DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
           D +DIGAGKGKYYAVNIPLRDGMDD++YESIFVPIISKVMETFQP+AVVLQCGADSLTGD
Sbjct: 208 DLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVMETFQPAAVVLQCGADSLTGD 267

Query: 84  RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
           RLGCFNLTV+GHGKCVEFVK+YNLPFLMVGGGGYTIRNVSRCWTYETSVAL  EIANELP
Sbjct: 268 RLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGGYTIRNVSRCWTYETSVALAVEIANELP 327

Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSP 199
           YNDYFEYFGPDFKLHISPSNM NQNT EYLEKIK RLFENLRMLPHAPGVQ+Q  P
Sbjct: 328 YNDYFEYFGPDFKLHISPSNMTNQNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIP 383
Catalyzes the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation may constitute a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. For instance, deacetylation of histone H3 may be a prerequisite for the subsequent recruitment of the histone methyltransferase Su(var)3-9 to histones. Involved in position-effect variegation (PEV).
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1 SV=1 Back     alignment and function description
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1 Back     alignment and function description
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1 Back     alignment and function description
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q91695|HDA1A_XENLA Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-a PE=1 SV=1 Back     alignment and function description
>sp|P56519|HDAC2_CHICK Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
340718122 1431 PREDICTED: hypothetical protein LOC10064 0.645 0.127 0.945 2e-99
307176124 494 Histone deacetylase Rpd3 [Camponotus flo 0.645 0.368 0.945 3e-98
328788017 492 PREDICTED: histone deacetylase Rpd3 isof 0.645 0.369 0.945 5e-98
380012355 486 PREDICTED: histone deacetylase Rpd3-like 0.645 0.374 0.945 7e-98
383864165 492 PREDICTED: histone deacetylase Rpd3-like 0.645 0.369 0.945 9e-98
268607740 492 Rpd3 histone deacetylase [Nasonia vitrip 0.645 0.369 0.939 1e-97
350400285 492 PREDICTED: histone deacetylase Rpd3-like 0.645 0.369 0.945 1e-97
307215210 498 Histone deacetylase Rpd3 [Harpegnathos s 0.645 0.365 0.939 3e-97
332020933 497 Histone deacetylase Rpd3 [Acromyrmex ech 0.645 0.366 0.928 2e-96
242008175340 histone deacetylase RPD3, putative [Pedi 0.606 0.502 0.944 2e-96
>gi|340718122|ref|XP_003397521.1| PREDICTED: hypothetical protein LOC100642763 [Bombus terrestris] Back     alignment and taxonomy information
 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/182 (94%), Positives = 176/182 (96%)

Query: 24  DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
           D +DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD
Sbjct: 210 DLRDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 269

Query: 84  RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
           RLGCFNLTVRGHGKCVEFVK+YNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP
Sbjct: 270 RLGCFNLTVRGHGKCVEFVKKYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 329

Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGP 203
           YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQ  P  G 
Sbjct: 330 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQPIPEDGA 389

Query: 204 IL 205
           ++
Sbjct: 390 VI 391

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307176124|gb|EFN65822.1| Histone deacetylase Rpd3 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328788017|ref|XP_394976.4| PREDICTED: histone deacetylase Rpd3 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|380012355|ref|XP_003690250.1| PREDICTED: histone deacetylase Rpd3-like, partial [Apis florea] Back     alignment and taxonomy information
>gi|383864165|ref|XP_003707550.1| PREDICTED: histone deacetylase Rpd3-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|268607740|ref|NP_001161325.1| Rpd3 histone deacetylase [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350400285|ref|XP_003485786.1| PREDICTED: histone deacetylase Rpd3-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307215210|gb|EFN89982.1| Histone deacetylase Rpd3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332020933|gb|EGI61327.1| Histone deacetylase Rpd3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|242008175|ref|XP_002424887.1| histone deacetylase RPD3, putative [Pediculus humanus corporis] gi|212508452|gb|EEB12149.1| histone deacetylase RPD3, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
FB|FBgn0015805521 Rpd3 "Rpd3" [Drosophila melano 0.624 0.337 0.914 1.4e-87
UNIPROTKB|P56517480 HDAC1 "Histone deacetylase 1" 0.624 0.366 0.846 9.4e-82
UNIPROTKB|Q32PJ8482 HDAC1 "Histone deacetylase 1" 0.624 0.365 0.835 5.2e-81
UNIPROTKB|F5GXM1289 HDAC1 "Histone deacetylase 1" 0.624 0.608 0.835 5.2e-81
UNIPROTKB|Q13547482 HDAC1 "Histone deacetylase 1" 0.624 0.365 0.835 5.2e-81
UNIPROTKB|F1SV89392 LOC100521667 "Histone deacetyl 0.624 0.448 0.835 5.2e-81
UNIPROTKB|I3LG31489 LOC100622482 "Histone deacetyl 0.624 0.359 0.835 5.2e-81
MGI|MGI:108086482 Hdac1 "histone deacetylase 1" 0.624 0.365 0.835 5.2e-81
RGD|619975482 Hdac1l "histone deacetylase 1- 0.624 0.365 0.835 5.2e-81
UNIPROTKB|E2R692487 HDAC1 "Uncharacterized protein 0.624 0.361 0.836 1.8e-80
FB|FBgn0015805 Rpd3 "Rpd3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 161/176 (91%), Positives = 168/176 (95%)

Query:    24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
             D +DIGAGKGKYYAVNIPLRDGMDD++YESIFVPIISKVMETFQP+AVVLQCGADSLTGD
Sbjct:   208 DLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVMETFQPAAVVLQCGADSLTGD 267

Query:    84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
             RLGCFNLTV+GHGKCVEFVK+YNLPFLMVGGGGYTIRNVSRCWTYETSVAL  EIANELP
Sbjct:   268 RLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGGYTIRNVSRCWTYETSVALAVEIANELP 327

Query:   144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSP 199
             YNDYFEYFGPDFKLHISPSNM NQNT EYLEKIK RLFENLRMLPHAPGVQ+Q  P
Sbjct:   328 YNDYFEYFGPDFKLHISPSNMTNQNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIP 383
GO:0004407 "histone deacetylase activity" evidence=ISS;IDA;NAS
GO:0007350 "blastoderm segmentation" evidence=IMP
GO:0016575 "histone deacetylation" evidence=IMP;NAS
GO:0005634 "nucleus" evidence=IDA;NAS
GO:0016580 "Sin3 complex" evidence=NAS
GO:0000785 "chromatin" evidence=IDA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP;NAS
GO:0016581 "NuRD complex" evidence=NAS;IPI
GO:0016458 "gene silencing" evidence=IMP
GO:0006342 "chromatin silencing" evidence=IGI;IMP;IPI
GO:0048477 "oogenesis" evidence=TAS
GO:0003714 "transcription corepressor activity" evidence=NAS;IPI
GO:0035098 "ESC/E(Z) complex" evidence=IDA;TAS
GO:0008340 "determination of adult lifespan" evidence=IMP;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0031523 "Myb complex" evidence=IDA
GO:0017053 "transcriptional repressor complex" evidence=IPI
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA
GO:0007517 "muscle organ development" evidence=IMP
GO:0048813 "dendrite morphogenesis" evidence=IMP
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IDA
GO:0022904 "respiratory electron transport chain" evidence=IDA
GO:2001229 "negative regulation of response to gamma radiation" evidence=IMP
GO:0005705 "polytene chromosome interband" evidence=IDA
GO:0050771 "negative regulation of axonogenesis" evidence=IMP
GO:0070983 "dendrite guidance" evidence=IMP
GO:0070822 "Sin3-type complex" evidence=IDA
GO:0005700 "polytene chromosome" evidence=IDA
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|P56517 HDAC1 "Histone deacetylase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PJ8 HDAC1 "Histone deacetylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F5GXM1 HDAC1 "Histone deacetylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q13547 HDAC1 "Histone deacetylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SV89 LOC100521667 "Histone deacetylase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LG31 LOC100622482 "Histone deacetylase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:108086 Hdac1 "histone deacetylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619975 Hdac1l "histone deacetylase 1-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R692 HDAC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94517HDAC1_DROME3, ., 5, ., 1, ., 9, 80.91470.62410.3378yesN/A
O17695HDA1_CAEEL3, ., 5, ., 1, ., 9, 80.63630.62410.3817yesN/A
O59702CLR6_SCHPO3, ., 5, ., 1, ., 9, 80.59770.61700.4296yesN/A
Q4QQW4HDAC1_RAT3, ., 5, ., 1, ., 9, 80.83520.62410.3651yesN/A
Q13547HDAC1_HUMAN3, ., 5, ., 1, ., 9, 80.83520.62410.3651yesN/A
O09106HDAC1_MOUSE3, ., 5, ., 1, ., 9, 80.83520.62410.3651yesN/A
Q5RAG0HDAC1_PONAB3, ., 5, ., 1, ., 9, 80.83520.62410.3651yesN/A
Q9FML2HDA6_ARATH3, ., 5, ., 1, ., 9, 80.62770.62760.3757yesN/A
Q32PJ8HDAC1_BOVIN3, ., 5, ., 1, ., 9, 80.83520.62410.3651yesN/A
P32561RPD3_YEAST3, ., 5, ., 1, ., 9, 80.58040.61700.4018yesN/A
P56517HDAC1_CHICK3, ., 5, ., 1, ., 9, 80.84650.62410.3666yesN/A
Q55FN5HDA11_DICDI3, ., 5, ., 1, ., 9, 80.64770.62410.3555yesN/A
P56518HDAC1_STRPU3, ., 5, ., 1, ., 9, 80.80680.62410.3055yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.824
3rd Layer3.5.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 1e-105
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 1e-103
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 5e-96
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 8e-93
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 2e-90
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 3e-75
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 2e-67
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 6e-56
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 2e-41
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 1e-37
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 5e-35
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 7e-35
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 1e-34
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 2e-34
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 7e-34
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 6e-33
cd10005 381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 1e-31
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 1e-30
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 7e-29
PTZ00063 436 PTZ00063, PTZ00063, histone deacetylase; Provision 1e-28
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 5e-27
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 2e-26
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 3e-22
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 2e-20
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 6e-19
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 2e-18
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 3e-15
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 6e-15
PTZ00346 429 PTZ00346, PTZ00346, histone deacetylase; Provision 7e-15
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 5e-12
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 2e-11
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 2e-10
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 3e-10
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 7e-10
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 5e-09
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 6e-09
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-08
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 6e-07
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 1e-06
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 4e-06
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 4e-06
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 4e-06
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 1e-05
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 2e-05
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 2e-05
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 4e-05
cd11683337 cd11683, HDAC10, Histone deacetylase 10 5e-04
cd11683337 cd11683, HDAC10, Histone deacetylase 10 6e-04
cd10007420 cd10007, HDAC5, Histone deacetylase 5 0.002
cd10007 420 cd10007, HDAC5, Histone deacetylase 5 0.002
cd10009379 cd10009, HDAC9, Histone deacetylase 9 0.004
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information 
 Score =  309 bits (793), Expect = e-105
 Identities = 141/165 (85%), Positives = 153/165 (92%)

Query: 24  DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
           D +DIGAGKGKYYAVN PLRDG+DDESYE+IF P++SKVME FQPSAVVLQCGADSL+GD
Sbjct: 207 DLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGADSLSGD 266

Query: 84  RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
           RLGCFNLT++GH KCVEFVK +NLP LM+GGGGYTIRNV+RCWTYET+VAL SEI NELP
Sbjct: 267 RLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDSEIPNELP 326

Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLP 188
           YNDYFEYFGPDFKLHISPSNM NQNT EYLEKIK RLFENLRMLP
Sbjct: 327 YNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLP 371

Histone deacetylase 1 (HDAC1) is a Zn-dependent class I enzyme that catalyzes hydrolysis of N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. HDAC1 is involved in regulation through association with DNA binding proteins to target specific chromatin regions. In particular, HDAC1 appears to play a major role in pre-implantation embryogenesis in establishing a repressive chromatin state. Its interaction with retinoblastoma tumor-suppressor protein is essential in the control of cell proliferation and differentiation. Together with metastasis-associated protein-2 (MTA2), it deacetylates p53, thereby modulating its effect on cell growth and apoptosis. It participates in DNA-damage response, along with HDAC2; together, they promote DNA non-homologous end-joining. HDAC1 is also involved in tumorogenesis; its overexpression modulates cancer progression. Specific inhibitors of HDAC1 are currently used in cancer therapy. Length = 371
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
PTZ00063436 histone deacetylase; Provisional 100.0
KOG1342|consensus425 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
KOG1343|consensus 797 99.96
KOG1343|consensus797 99.93
PTZ00346 429 histone deacetylase; Provisional 99.9
PTZ00063 436 histone deacetylase; Provisional 99.9
COG0123340 AcuC Deacetylases, including yeast histone deacety 99.89
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 99.88
KOG1342|consensus 425 99.75
KOG1344|consensus324 99.35
KOG1344|consensus324 98.71
cd01835193 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SG 85.49
cd04502171 SGNH_hydrolase_like_7 Members of the SGNH-hydrolas 84.82
cd01836191 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, Fee 83.71
cd04237280 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) 82.27
cd01825189 SGNH_hydrolase_peri1 SGNH_peri1; putative periplas 81.29
COG1618179 Predicted nucleotide kinase [Nucleotide transport 80.93
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5e-54  Score=408.99  Aligned_cols=201  Identities=53%  Similarity=1.000  Sum_probs=196.5

Q ss_pred             CcccCCCeEEEEcCCCC-CCCCCCCCCCCCCCCCcccEEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCC
Q psy8693           1 MYLLNTNANFIVNDRDQ-TWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADS   79 (282)
Q Consensus         1 ~f~~dp~v~~~s~h~~~-~yPgtG~~~~~G~g~g~g~~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~   79 (282)
                      +||+||+|+|+|+|+++ ||||||..+++|.+.|+||++||||++|++|++|+.+|+++|.|++++|+||+||+|||+|+
T Consensus       183 ~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~  262 (436)
T PTZ00063        183 AFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADS  262 (436)
T ss_pred             HhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence            59999999999999997 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHHHHHHHHHcCC--CCcCCCCCCccccccCCCccc
Q psy8693          80 LTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGS--EIANELPYNDYFEYFGPDFKL  157 (282)
Q Consensus        80 ~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~~~~~~~~~g~--~~~~~~p~~~~~~~~~pdf~l  157 (282)
                      |.+||||.|+||.++|++|+++++++++|+++||||||+++++||||+++|++++|.  +++.+||+|+||+.|+|+|++
T Consensus       263 ~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~~~~~~~~~~~~~iP~~~~~~~~~~~~~l  342 (436)
T PTZ00063        263 LTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETGVILNKHDEMSDQISLNDYYDYYAPDFQL  342 (436)
T ss_pred             cCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHHHHhCCcccCCccCCCCcchhhcCCCeEe
Confidence            999999999999999999999999999999999999999999999999999999997  799999999999999999999


Q ss_pred             ccCCCCCCCCCchhHHHhhhhhhhhccccCCCCCCcceeccccC
Q psy8693         158 HISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPII  201 (282)
Q Consensus       158 ~v~~~~~~~~Nt~e~le~i~~vl~esL~~~~~~Pgvq~~f~p~~  201 (282)
                      ++.+++++|+|++++++++...++++|+++++.|++|++..|.+
T Consensus       343 ~~~~~~~~n~n~~~~l~~~~~~~~~~l~~~~~ap~v~~~~~~~~  386 (436)
T PTZ00063        343 HLQPSNIPNYNSPEHLEKIKVKILENLRYLEHAPGVQFAYVPPD  386 (436)
T ss_pred             ecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCeeccccCCcc
Confidence            99999999999999999999999999999999999999998874

>KOG1342|consensus Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1342|consensus Back     alignment and domain information
>KOG1344|consensus Back     alignment and domain information
>KOG1344|consensus Back     alignment and domain information
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily Back     alignment and domain information
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases Back     alignment and domain information
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts Back     alignment and domain information
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 2e-74
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 6e-29
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 3e-62
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 4e-21
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 2e-39
3ew8_A 388 Crystal Structure Analysis Of Human Hdac8 D101l Var 2e-14
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 2e-39
3f06_A 388 Crystal Structure Analysis Of Human Hdac8 D101a Var 3e-14
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 2e-39
3ezp_A 388 Crystal Structure Analysis Of Human Hdac8 D101n Var 2e-14
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 2e-39
3ewf_A 388 Crystal Structure Analysis Of Human Hdac8 H143a Var 3e-14
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 2e-39
3mz4_A 389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 3e-14
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 2e-39
3mz3_A 389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 3e-14
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 2e-39
3f07_A 388 Crystal Structure Analysis Of Human Hdac8 Complexed 3e-14
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 2e-39
2v5x_A 388 Crystal Structure Of Hdac8-Inhibitor Complex Length 3e-14
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 2e-39
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 2e-14
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 2e-39
3ezt_A 388 Crystal Structure Analysis Of Human Hdac8 D101e Var 2e-14
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 2e-39
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 3e-14
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 6e-39
2v5w_A 388 Crystal Structure Of Hdac8-Substrate Complex Length 3e-14
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 4e-09
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 6e-08
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 5e-09
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 7e-08
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 1e-04
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure 
Iteration: 1

 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/164 (84%), Positives = 149/164 (90%)
Query: 24  DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
           D +DIGAGKGKYYAVN P+RDG+DDESY  IF PIISKVME +QPSAVVLQCGADSL+GD
Sbjct: 204 DLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGD 263
Query: 84  RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
           RLGCFNLTV+GH KCVE VK +NLP LM+GGGGYTIRNV+RCWTYET+VAL  EI NELP
Sbjct: 264 RLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELP 323
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRML 187
           YNDYFEYFGPDFKLHISPSNM NQNTPEY+EKIK RLFENLRML
Sbjct: 324 YNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML 367
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 1e-104
3ew8_A 388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 1e-34
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 1e-100
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 3e-34
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 3e-98
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 2e-34
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 4e-83
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 4e-33
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 2e-13
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 7e-10
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 2e-12
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 4e-09
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 7e-11
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 3e-10
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 3e-08
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
 Score =  307 bits (788), Expect = e-104
 Identities = 69/173 (39%), Positives = 112/173 (64%)

Query: 24  DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
           D  D+G GKG+YY+VN+P++DG+ DE Y  I   ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272

Query: 84  RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
            +  FN+T  G GKC++++ ++ L  L++GGGGY + N +RCWTY T V LG  +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 332

Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQ 196
            +++F  +GPD+ L I+PS   ++N P  +++I   +  NL+ +         
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEGRSHHH 385
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3ew8_A 388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 99.92
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 99.91
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 99.9
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 99.9
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 99.9
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 99.88
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 99.88
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 99.88
2vqm_A 413 HD4, histone deacetylase 4; inhibitor, repressor, 99.86
4hf7_A209 Putative acylhydrolase; PF13472 family, structural 88.04
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 84.65
3hp4_A185 GDSL-esterase; psychrotrophic, monoethylphosphonat 81.66
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.4e-55  Score=414.37  Aligned_cols=194  Identities=52%  Similarity=1.054  Sum_probs=185.2

Q ss_pred             CcccCCCeEEEEcCCCC--CCCCCCCCCCCCCCCCcccEEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCC
Q psy8693           1 MYLLNTNANFIVNDRDQ--TWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGAD   78 (282)
Q Consensus         1 ~f~~dp~v~~~s~h~~~--~yPgtG~~~~~G~g~g~g~~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D   78 (282)
                      +||+||+|+|+|+|+++  ||||||..+|+|.++|+|+++|||||+|++|++|+++|+++|.|++++|+||+||+|||||
T Consensus       180 iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~D  259 (376)
T 4a69_A          180 AFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGAD  259 (376)
T ss_dssp             HTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGG
T ss_pred             HhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCccc
Confidence            59999999999999986  8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHHHHHHHHHcCCCCcCCCCCCccccccCCCcccc
Q psy8693          79 SLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLH  158 (282)
Q Consensus        79 ~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~pdf~l~  158 (282)
                      +|.+||||+|+||+++|++|+++++++++|+++|+||||++++++|||++++++++|.++|.++|+++|++.|+|||+||
T Consensus       260 a~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~~~P~~~~~~~~~p~~~l~  339 (376)
T 4a69_A          260 SLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLH  339 (376)
T ss_dssp             GBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCSBCCCCTTGGGGTTTCBSS
T ss_pred             CCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccCCCCCchHHHHhCCCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCCCCCCCchhHHHhhhhhhhhccccCCCCCCcc
Q psy8693         159 IS-PSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQ  194 (282)
Q Consensus       159 v~-~~~~~~~Nt~e~le~i~~vl~esL~~~~~~Pgvq  194 (282)
                      +. +++|+|+|+.+++++++..++++|+++++.|++|
T Consensus       340 ~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~  376 (376)
T 4a69_A          340 PDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ  376 (376)
T ss_dssp             CCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            98 8899999999999999999999999999999986
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 6e-60
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 1e-10
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 1e-35
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 6e-11
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 2e-28
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 8e-11
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  192 bits (489), Expect = 6e-60
 Identities = 69/165 (41%), Positives = 112/165 (67%)

Query: 23  HDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTG 82
            D  D+G GKG+YY+VN+P++DG+ DE Y  I   ++ +V + F P AVVLQ GAD++ G
Sbjct: 199 GDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAG 258

Query: 83  DRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANEL 142
           D +  FN+T  G GKC++++ ++ L  L++GGGGY + N +RCWTY T V LG  +++E+
Sbjct: 259 DPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEI 318

Query: 143 PYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRML 187
           P +++F  +GPD+ L I+PS   ++N P  +++I   +  NL+ +
Sbjct: 319 PDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 363
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 99.88
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 99.88
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 99.85
d1uf3a_228 Hypothetical protein TT1561 {Thermus thermophilus 84.79
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-51  Score=383.44  Aligned_cols=187  Identities=37%  Similarity=0.774  Sum_probs=183.0

Q ss_pred             CcccCCCeEEEEcCCCC--CCCCCCCCCCCCCCCCcccEEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCC
Q psy8693           1 MYLLNTNANFIVNDRDQ--TWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGAD   78 (282)
Q Consensus         1 ~f~~dp~v~~~s~h~~~--~yPgtG~~~~~G~g~g~g~~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D   78 (282)
                      +||+||+|+|+|+|+++  ||||||..+++|.++|+|+++|||||+|++|++|+.+|+++|.|++++|+||+||+|||||
T Consensus       175 iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~~~~f~Pd~IvvsaG~D  254 (364)
T d1t64a_         175 AFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGAD  254 (364)
T ss_dssp             HHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCST
T ss_pred             eeecCCcccccccccccCCCCCCCCChhccCCcccccceeeeecccccChHHHHHHHHHhhHHHhhcCCCCEEEEECCcc
Confidence            59999999999999875  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHHHHHHHHHcCCCCcCCCCCCccccccCCCcccc
Q psy8693          79 SLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLH  158 (282)
Q Consensus        79 ~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~pdf~l~  158 (282)
                      +|.+||+|+|+||.++|++|+++++++++|+++++|||||+++++|||++++++++|++++.++|+|+||+.|+|+|+++
T Consensus       255 ~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~~~~P~~~~~~~~~p~~~~~  334 (364)
T d1t64a_         255 TIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLE  334 (364)
T ss_dssp             TBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCSBCCCCTTGGGGTTTCBSC
T ss_pred             CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHHHcCCCCCccCCCchhhhhcCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCchhHHHhhhhhhhhccccC
Q psy8693         159 ISPSNMANQNTPEYLEKIKTRLFENLRML  187 (282)
Q Consensus       159 v~~~~~~~~Nt~e~le~i~~vl~esL~~~  187 (282)
                      +.++.++|+|+.++++++.+.+.++|+++
T Consensus       335 ~~~~~~~~~n~~~~~~~i~~~i~~~l~~~  363 (364)
T d1t64a_         335 ITPSCRPDRNEPHRIQQILNYIKGNLKHV  363 (364)
T ss_dssp             CCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred             cCcccccccCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999874
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure