Psyllid ID: psy8699

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MGDQGYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY
cccccHHHHHHHHHHHHHHccccEEEEcccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccHHHHHHcccccEEEccccHHHHHHHHHHHHcccccEEEEcccHHHHcccccccccccccccccEEEEEEcccEEEEEccHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHHHHcHHccccccccccccccccccccccccccHHHHHHHHHHHHcc
cccHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEccHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccEEEEccHHHHHHHHHccccccEEEEcccEEEEEccccEEEEEHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEcccccccccHHHHHHcccHHHHHHHHHHHHcc
mgdqgywtgffqsspsqllssqggvlfgedvgfggvfrcslglqekygkhrvfntplseqgivGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYryrsgnqfscgnltirapcmavghgalyhsqspeayfahtpgikvviprgpykakGLLLScikdkdpciffepkvLYRAAvedvpedyyelpldkadilvagtdvtligwGTQVHVLREVAGLAKEqlgvscevidlvsilpwdretVFQSARKTGRVIiaheapltsgfgAELAASIQDKCFlsleapirrvtgydtpfphifepfyipdkWRCLEAVKQITRY
MGDQGYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHifepfyipdkWRCLEAVKQITRY
MGDQGYWTgffqsspsqllssqggvlfgEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY
*****YWTGFFQ*****LLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQ****
*GDQGYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY
MGDQGYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY
**DQGYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGDQGYWTGFFQSSPSQLLSSQGGVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query325 2.2.26 [Sep-21-2011]
P35738390 2-oxoisovalerate dehydrog yes N/A 0.990 0.825 0.699 1e-137
Q6P3A8390 2-oxoisovalerate dehydrog no N/A 0.975 0.812 0.707 1e-137
P21953392 2-oxoisovalerate dehydrog yes N/A 0.975 0.808 0.700 1e-137
P21839392 2-oxoisovalerate dehydrog yes N/A 0.975 0.808 0.697 1e-137
Q55FN7370 2-oxoisovalerate dehydrog yes N/A 0.926 0.813 0.674 1e-122
Q9I1M1350 2-oxoisovalerate dehydrog yes N/A 0.901 0.837 0.479 2e-78
P09061339 2-oxoisovalerate dehydrog yes N/A 0.901 0.864 0.488 5e-78
Q5SLR3324 2-oxoisovalerate dehydrog yes N/A 0.916 0.919 0.508 3e-77
Q72GU2324 2-oxoisovalerate dehydrog yes N/A 0.916 0.919 0.504 3e-76
P37941327 2-oxoisovalerate dehydrog yes N/A 0.916 0.911 0.437 3e-68
>sp|P35738|ODBB_RAT 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3 Back     alignment and function desciption
 Score =  489 bits (1259), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 228/326 (69%), Positives = 280/326 (85%), Gaps = 4/326 (1%)

Query: 4   QGYWTGFFQSSPSQLLSSQG----GVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSE 59
           Q      FQS  S L +S       V+FGEDV FGGVFRC++GL++KYGK RVFNTPL E
Sbjct: 65  QTQKMNLFQSITSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCE 124

Query: 60  QGIVGFGIGLAVSGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPC 119
           QGIVGFGIG+AV+GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSG+ F+CG+LTIRAP 
Sbjct: 125 QGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPW 184

Query: 120 MAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRA 179
             VGHGALYHSQSPEA+FAH PGIKVVIPR P++AKGLLLSCI+DK+PCIFFEPK+LYRA
Sbjct: 185 GCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRA 244

Query: 180 AVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVS 239
           AVE VP + Y++PL +A+++  G+DVTL+ WGTQVHV+REVA +A+E+LGVSCEVIDL +
Sbjct: 245 AVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRT 304

Query: 240 ILPWDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTP 299
           I+PWD +TV +S  KTGR++I+HEAPLT GF +E+++++Q++CFL+LEAPI RV GYDTP
Sbjct: 305 IVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTP 364

Query: 300 FPHIFEPFYIPDKWRCLEAVKQITRY 325
           FPHIFEPFYIPDKW+C +A++++  Y
Sbjct: 365 FPHIFEPFYIPDKWKCYDALRKMINY 390
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 4
>sp|Q6P3A8|ODBB_MOUSE 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2 Back     alignment and function description
>sp|P21953|ODBB_HUMAN 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2 Back     alignment and function description
>sp|P21839|ODBB_BOVIN 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2 Back     alignment and function description
>sp|Q55FN7|ODBB_DICDI 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1 Back     alignment and function description
>sp|Q9I1M1|ODBB_PSEAE 2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=bkdA2 PE=3 SV=1 Back     alignment and function description
>sp|P09061|ODBB_PSEPU 2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1 Back     alignment and function description
>sp|Q5SLR3|ODBB_THET8 2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1 Back     alignment and function description
>sp|Q72GU2|ODBB_THET2 2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1 Back     alignment and function description
>sp|P37941|ODBB_BACSU 2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis (strain 168) GN=bfmBAB PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
170058287370 2-oxoisovalerate dehydrogenase subunit b 0.929 0.816 0.781 1e-141
58378269365 AGAP007531-PA [Anopheles gambiae str. PE 0.966 0.860 0.732 1e-139
348532057386 PREDICTED: 2-oxoisovalerate dehydrogenas 0.975 0.821 0.725 1e-138
427789815380 Putative pyruvate dehydrogenase e1 beta 0.947 0.810 0.717 1e-138
410904925392 PREDICTED: 2-oxoisovalerate dehydrogenas 0.975 0.808 0.722 1e-138
312377445371 hypothetical protein AND_11230 [Anophele 0.966 0.846 0.726 1e-138
91076836369 PREDICTED: similar to AGAP007531-PA [Tri 0.947 0.834 0.746 1e-137
346471947380 hypothetical protein [Amblyomma maculatu 0.929 0.794 0.725 1e-137
350536741368 uncharacterized protein LOC100165320 [Ac 0.947 0.836 0.711 1e-137
242023669320 2-oxoisovalerate dehydrogenase, beta sub 0.947 0.962 0.737 1e-137
>gi|170058287|ref|XP_001864856.1| 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial [Culex quinquefasciatus] gi|167877436|gb|EDS40819.1| 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial [Culex quinquefasciatus] Back     alignment and taxonomy information
 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/302 (78%), Positives = 269/302 (89%)

Query: 24  GVLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
            ++FGEDV FGGVFRCS+GLQ+KYGK RVFNTPL EQGI GF IG+A +GATAIAE+QFA
Sbjct: 69  ALVFGEDVAFGGVFRCSMGLQKKYGKDRVFNTPLCEQGIAGFAIGVANTGATAIAEMQFA 128

Query: 84  DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
           DYIFPAFDQIVNEAAKYRYRSGN F CG+LT RAPC AVGHGA YHSQSPEAYFAHTPG+
Sbjct: 129 DYIFPAFDQIVNEAAKYRYRSGNLFDCGSLTFRAPCGAVGHGACYHSQSPEAYFAHTPGL 188

Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGT 203
           KVV+PRGP KAKGLLL+CIK+KDPCI FEPK LYRAAVE+VP   +E PL KADIL  G+
Sbjct: 189 KVVVPRGPNKAKGLLLACIKEKDPCIVFEPKTLYRAAVEEVPVAAFESPLGKADILRTGS 248

Query: 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263
           DVTLIGWGTQ+HVL EVA +AK+Q GV+CEVIDLVSILPWD++T+  SA+KTGRV+IAHE
Sbjct: 249 DVTLIGWGTQIHVLSEVADMAKKQYGVNCEVIDLVSILPWDKDTICSSAKKTGRVLIAHE 308

Query: 264 APLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQIT 323
           APLTSGFGAELAA+IQ++CFL LEAP+ RVTG+DTPFPH+FEPFYIPDK+RCL  VK++ 
Sbjct: 309 APLTSGFGAELAATIQEECFLHLEAPVARVTGWDTPFPHVFEPFYIPDKFRCLAGVKKLI 368

Query: 324 RY 325
            Y
Sbjct: 369 DY 370

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|58378269|ref|XP_308350.2| AGAP007531-PA [Anopheles gambiae str. PEST] gi|55245397|gb|EAA04690.2| AGAP007531-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|348532057|ref|XP_003453523.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|427789815|gb|JAA60359.1| Putative pyruvate dehydrogenase e1 beta subunit [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|410904925|ref|XP_003965942.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Takifugu rubripes] Back     alignment and taxonomy information
>gi|312377445|gb|EFR24274.1| hypothetical protein AND_11230 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|91076836|ref|XP_974707.1| PREDICTED: similar to AGAP007531-PA [Tribolium castaneum] gi|270001821|gb|EEZ98268.1| hypothetical protein TcasGA2_TC000711 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|346471947|gb|AEO35818.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|350536741|ref|NP_001233071.1| uncharacterized protein LOC100165320 [Acyrthosiphon pisum] gi|239799289|dbj|BAH70573.1| ACYPI006277 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242023669|ref|XP_002432254.1| 2-oxoisovalerate dehydrogenase, beta subunit, putative [Pediculus humanus corporis] gi|212517656|gb|EEB19516.1| 2-oxoisovalerate dehydrogenase, beta subunit, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
UNIPROTKB|F1NK15392 BCKDHB "Uncharacterized protei 0.913 0.757 0.737 1.5e-124
MGI|MGI:88137390 Bckdhb "branched chain ketoaci 0.913 0.761 0.734 1.5e-124
RGD|2197390 Bckdhb "branched chain keto ac 0.913 0.761 0.734 1.5e-124
UNIPROTKB|P35738390 Bckdhb "2-oxoisovalerate dehyd 0.913 0.761 0.734 1.5e-124
UNIPROTKB|E2QYD3387 BCKDHB "Uncharacterized protei 0.913 0.767 0.730 2.4e-124
ZFIN|ZDB-GENE-030124-2391 bckdhb "branched chain ketoaci 0.913 0.759 0.727 2.4e-124
UNIPROTKB|P21839392 BCKDHB "2-oxoisovalerate dehyd 0.913 0.757 0.727 3e-124
UNIPROTKB|P21953392 BCKDHB "2-oxoisovalerate dehyd 0.913 0.757 0.727 3e-124
FB|FBgn0039993364 CG17691 [Drosophila melanogast 0.913 0.815 0.747 5.7e-123
WB|WBGene00006518366 tag-173 [Caenorhabditis elegan 0.913 0.811 0.666 4.2e-111
UNIPROTKB|F1NK15 BCKDHB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
 Identities = 219/297 (73%), Positives = 266/297 (89%)

Query:    29 EDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88
             EDV FGGVFRC++GL++KYGK RVFNTPL EQGIVGFGIG+AV+GATAIAEIQFADYIFP
Sbjct:    96 EDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGVAVAGATAIAEIQFADYIFP 155

Query:    89 AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIP 148
             AFDQIVNEAAKYRYRSG+ F+CGNLTIRAP   VGHGALYHSQSPEA+FAH PGIK+VIP
Sbjct:   156 AFDQIVNEAAKYRYRSGDLFNCGNLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKIVIP 215

Query:   149 RGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLI 208
             R P +AKGLLLSCI+DK+PCIFFEPK+LYRAAVE VP + Y +PL +A++L  G+DVTL+
Sbjct:   216 RSPLQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYNIPLSQAEVLRQGSDVTLV 275

Query:   209 GWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTS 268
              WGTQVHV++EVA +A+E+LGVSCEVIDL +ILPWD ET+ +S  KTGR++I+HEAPLT 
Sbjct:   276 AWGTQVHVIKEVAVMAQEKLGVSCEVIDLRTILPWDTETICKSVVKTGRLLISHEAPLTG 335

Query:   269 GFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY 325
             GF +E+++++Q++CFL+LEAPI RV GYDTPFPHIFEPFYIPDKW+C +A++++  Y
Sbjct:   336 GFASEISSTVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALRKMINY 392
GO:0003826 "alpha-ketoacid dehydrogenase activity" evidence=IEA
GO:0005947 "mitochondrial alpha-ketoglutarate dehydrogenase complex" evidence=IEA
GO:0009083 "branched-chain amino acid catabolic process" evidence=IEA
MGI|MGI:88137 Bckdhb "branched chain ketoacid dehydrogenase E1, beta polypeptide" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2197 Bckdhb "branched chain keto acid dehydrogenase E1, beta polypeptide" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P35738 Bckdhb "2-oxoisovalerate dehydrogenase subunit beta, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYD3 BCKDHB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030124-2 bckdhb "branched chain ketoacid dehydrogenase E1, beta polypeptide" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P21839 BCKDHB "2-oxoisovalerate dehydrogenase subunit beta, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P21953 BCKDHB "2-oxoisovalerate dehydrogenase subunit beta, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0039993 CG17691 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00006518 tag-173 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P37941ODBB_BACSU1, ., 2, ., 4, ., 40.43750.91690.9113yesN/A
P09061ODBB_PSEPU1, ., 2, ., 4, ., 40.48880.90150.8643yesN/A
Q5SLR3ODBB_THET81, ., 2, ., 4, ., 40.50820.91690.9197yesN/A
Q72GU2ODBB_THET21, ., 2, ., 4, ., 40.50490.91690.9197yesN/A
P35488ODPB_ACHLA1, ., 2, ., 4, ., 10.45350.840.8348yesN/A
P47515ODPB_MYCGE1, ., 2, ., 4, ., 10.39740.92920.9263yesN/A
P32473ODPB_YEAST1, ., 2, ., 4, ., 10.36060.90460.8032yesN/A
Q6ABX8ODPB_LEIXX1, ., 2, ., 4, ., 10.44080.92920.8961yesN/A
Q6P3A8ODBB_MOUSE1, ., 2, ., 4, ., 40.70710.97530.8128noN/A
O06160BKDB_MYCTU1, ., 2, ., 4, ., 40.40780.91070.8505yesN/A
P75391ODPB_MYCPN1, ., 2, ., 4, ., 10.41110.91070.9051yesN/A
O66113ODPB_ZYMMO1, ., 2, ., 4, ., 10.35090.90150.6341yesN/A
Q9I1M1ODBB_PSEAE1, ., 2, ., 4, ., 40.47930.90150.8371yesN/A
P35738ODBB_RAT1, ., 2, ., 4, ., 40.69930.99070.8256yesN/A
P21839ODBB_BOVIN1, ., 2, ., 4, ., 40.69780.97530.8086yesN/A
P21953ODBB_HUMAN1, ., 2, ., 4, ., 40.70090.97530.8086yesN/A
Q1RJX3ODPB_RICBR1, ., 2, ., 4, ., 10.33980.93230.9323yesN/A
Q68XA8ODPB_RICTY1, ., 2, ., 4, ., 10.35570.94150.9386yesN/A
Q4UKQ7ODPB_RICFE1, ., 2, ., 4, ., 10.35890.94150.9386yesN/A
Q92IS2ODPB_RICCN1, ., 2, ., 4, ., 10.35250.94150.9386yesN/A
Q9ZDR3ODPB_RICPR1, ., 2, ., 4, ., 10.35570.94150.9386yesN/A
Q55FN7ODBB_DICDI1, ., 2, ., 4, ., 40.67440.92610.8135yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.2.40.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
PTZ00182355 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro 0.0
COG0022324 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena 1e-155
cd07036167 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY 3e-83
PRK09212327 PRK09212, PRK09212, pyruvate dehydrogenase subunit 2e-81
CHL00144327 CHL00144, odpB, pyruvate dehydrogenase E1 componen 1e-68
PRK11892464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 3e-65
PLN02683356 PLN02683, PLN02683, pyruvate dehydrogenase E1 comp 3e-65
pfam02780124 pfam02780, Transketolase_C, Transketolase, C-termi 2e-37
pfam02779172 pfam02779, Transket_pyr, Transketolase, pyrimidine 3e-37
smart00861136 smart00861, Transket_pyr, Transketolase, pyrimidin 8e-35
COG3958312 COG3958, COG3958, Transketolase, C-terminal subuni 4e-24
PRK05444580 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate 6e-12
COG1154627 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [ 4e-10
PRK12571641 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate 6e-10
TIGR00204617 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn 6e-09
PLN02582677 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate 1e-06
PLN02225701 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate 1e-04
cd07033156 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin 3e-04
PLN02234641 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate 6e-04
PRK12315581 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate 0.002
COG0567906 COG0567, SucA, 2-oxoglutarate dehydrogenase comple 0.004
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information 
 Score =  512 bits (1322), Expect = 0.0
 Identities = 177/302 (58%), Positives = 221/302 (73%), Gaps = 5/302 (1%)

Query: 25  VLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFA 83
            + GEDV  +GGV++C+ GL +KYG  RVF+TP++EQG  GF IG A++G   IAE  FA
Sbjct: 56  FVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEFMFA 115

Query: 84  DYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGI 143
           D+IFPAFDQIVNEAAKYRY SG QF C  + IR P  AVGHG  YHSQS EAYFAH PG+
Sbjct: 116 DFIFPAFDQIVNEAAKYRYMSGGQFDCP-IVIRGPNGAVGHGGAYHSQSFEAYFAHVPGL 174

Query: 144 KVVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGT 203
           KVV P  P  AKGLL + I+D +P +FFEPK+LYR +VE VPE  Y LPL KA ++  G 
Sbjct: 175 KVVAPSDPEDAKGLLKAAIRDPNPVVFFEPKLLYRESVEVVPEADYTLPLGKAKVVREGK 234

Query: 204 DVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHE 263
           DVT++G+G+QVHV  + A    ++ G+SCEVIDL S+ PWDRET+ +S +KTGR +I HE
Sbjct: 235 DVTIVGYGSQVHVALKAAEELAKE-GISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHE 293

Query: 264 APLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHI--FEPFYIPDKWRCLEAVKQ 321
           AP T G GAE+AA I + CFL LEAPI+RV G DTPFP+    EP Y+PDK + +EA K+
Sbjct: 294 APPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKNLEPAYLPDKEKVVEAAKR 353

Query: 322 IT 323
           + 
Sbjct: 354 VL 355

Length = 355
>gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain Back     alignment and domain information
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
COG0022324 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
COG3958312 Transketolase, C-terminal subunit [Carbohydrate tr 100.0
PLN02683356 pyruvate dehydrogenase E1 component subunit beta 100.0
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 100.0
PRK09212327 pyruvate dehydrogenase subunit beta; Validated 100.0
CHL00144327 odpB pyruvate dehydrogenase E1 component beta subu 100.0
PTZ00182355 3-methyl-2-oxobutanate dehydrogenase; Provisional 100.0
PLN02225701 1-deoxy-D-xylulose-5-phosphate synthase 100.0
KOG0524|consensus359 100.0
KOG0525|consensus362 100.0
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 100.0
COG1154627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 100.0
PLN02582677 1-deoxy-D-xylulose-5-phosphate synthase 100.0
PRK12571641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK12315581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK05444580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PLN02234641 1-deoxy-D-xylulose-5-phosphate synthase 100.0
PRK12753663 transketolase; Reviewed 100.0
TIGR00232653 tktlase_bact transketolase, bacterial and yeast. T 100.0
PRK05899624 transketolase; Reviewed 100.0
KOG0523|consensus632 100.0
PLN02790654 transketolase 100.0
PTZ00089661 transketolase; Provisional 100.0
PRK12754663 transketolase; Reviewed 100.0
TIGR03186889 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S 100.0
PRK09405891 aceE pyruvate dehydrogenase subunit E1; Reviewed 100.0
PRK13012896 2-oxoacid dehydrogenase subunit E1; Provisional 100.0
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 100.0
COG0021663 TktA Transketolase [Carbohydrate transport and met 100.0
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 100.0
TIGR00239929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 100.0
PRK09404924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 100.0
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 100.0
smart00861168 Transket_pyr Transketolase, pyrimidine binding dom 99.96
PRK07119352 2-ketoisovalerate ferredoxin reductase; Validated 99.94
PRK08659376 2-oxoglutarate ferredoxin oxidoreductase subunit a 99.93
PRK09627375 oorA 2-oxoglutarate-acceptor oxidoreductase subuni 99.93
TIGR03336 595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 99.92
PRK08366390 vorA 2-ketoisovalerate ferredoxin oxidoreductase s 99.89
PRK09622407 porA pyruvate flavodoxin oxidoreductase subunit al 99.89
TIGR03710562 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s 99.89
PF02780124 Transketolase_C: Transketolase, C-terminal domain; 99.86
PRK08367394 porA pyruvate ferredoxin oxidoreductase subunit al 99.86
PRK05261785 putative phosphoketolase; Provisional 99.81
COG4231 640 Indolepyruvate ferredoxin oxidoreductase, alpha an 99.8
TIGR00759885 aceE pyruvate dehydrogenase E1 component, homodime 99.72
COG0674365 PorA Pyruvate:ferredoxin oxidoreductase and relate 99.68
TIGR02176 1165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 99.66
PRK13030 1159 2-oxoacid ferredoxin oxidoreductase; Provisional 99.63
PRK09193 1165 indolepyruvate ferredoxin oxidoreductase; Validate 99.6
PRK13029 1186 2-oxoacid ferredoxin oxidoreductase; Provisional 99.55
COG2609887 AceE Pyruvate dehydrogenase complex, dehydrogenase 99.47
PRK122701228 kgd alpha-ketoglutarate decarboxylase; Reviewed 99.34
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 99.32
KOG0450|consensus1017 99.25
KOG0451|consensus913 99.17
PF01855230 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta 99.07
COG0567906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 98.93
COG3957793 Phosphoketolase [Carbohydrate transport and metabo 98.74
cd07034160 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi 97.6
cd07035155 TPP_PYR_POX_like Pyrimidine (PYR) binding domain o 97.2
PF03894179 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate 97.01
PRK08199 557 thiamine pyrophosphate protein; Validated 96.7
PRK07525 588 sulfoacetaldehyde acetyltransferase; Validated 96.62
PF02776172 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter 96.51
TIGR03457 579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 96.14
PRK06466 574 acetolactate synthase 3 catalytic subunit; Validat 96.01
PRK09259 569 putative oxalyl-CoA decarboxylase; Validated 95.96
PRK08322 547 acetolactate synthase; Reviewed 95.9
PRK08617 552 acetolactate synthase; Reviewed 95.88
PRK07092 530 benzoylformate decarboxylase; Reviewed 95.85
TIGR03845157 sulfopyru_alph sulfopyruvate decarboxylase, alpha 95.84
PRK06048 561 acetolactate synthase 3 catalytic subunit; Reviewe 95.7
PRK07710 571 acetolactate synthase catalytic subunit; Reviewed 95.67
PRK08978 548 acetolactate synthase 2 catalytic subunit; Reviewe 95.63
PRK12474 518 hypothetical protein; Provisional 95.55
PRK07789 612 acetolactate synthase 1 catalytic subunit; Validat 95.53
PRK07282 566 acetolactate synthase catalytic subunit; Reviewed 95.52
TIGR02418 539 acolac_catab acetolactate synthase, catabolic. Ace 95.49
TIGR00118 558 acolac_lg acetolactate synthase, large subunit, bi 95.49
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 95.45
PRK06725 570 acetolactate synthase 3 catalytic subunit; Validat 95.43
PRK08527 563 acetolactate synthase 3 catalytic subunit; Validat 95.28
cd07039164 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX 95.28
PRK06456 572 acetolactate synthase catalytic subunit; Reviewed 95.1
PRK06965 587 acetolactate synthase 3 catalytic subunit; Validat 95.09
PRK07586 514 hypothetical protein; Validated 95.07
PRK08155 564 acetolactate synthase catalytic subunit; Validated 94.97
PRK05858 542 hypothetical protein; Provisional 94.9
PRK07979 574 acetolactate synthase 3 catalytic subunit; Validat 94.81
PRK06457 549 pyruvate dehydrogenase; Provisional 94.54
PRK07524 535 hypothetical protein; Provisional 94.53
PRK08266 542 hypothetical protein; Provisional 94.46
PRK08979 572 acetolactate synthase 3 catalytic subunit; Validat 94.13
PRK07418 616 acetolactate synthase 3 catalytic subunit; Reviewe 93.96
cd07037162 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- 93.96
PRK08611 576 pyruvate oxidase; Provisional 93.94
PRK11269 591 glyoxylate carboligase; Provisional 93.71
TIGR01504 588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 93.38
PRK09107 595 acetolactate synthase 3 catalytic subunit; Validat 93.26
COG0028 550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 93.08
PRK06112 578 acetolactate synthase catalytic subunit; Validated 92.87
PRK07064 544 hypothetical protein; Provisional 92.78
cd02001157 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil 92.45
cd02014178 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv 92.31
PRK06882 574 acetolactate synthase 3 catalytic subunit; Validat 92.25
TIGR02720 575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 92.2
PRK08327 569 acetolactate synthase catalytic subunit; Validated 92.19
CHL00099 585 ilvB acetohydroxyacid synthase large subunit 92.13
PLN02470 585 acetolactate synthase 92.11
PRK09124 574 pyruvate dehydrogenase; Provisional 91.38
cd02013196 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, 91.05
PF09363203 XFP_C: XFP C-terminal domain; InterPro: IPR018969 90.29
COG4032172 Predicted thiamine-pyrophosphate-binding protein [ 90.04
PRK06546 578 pyruvate dehydrogenase; Provisional 89.92
PRK08273 597 thiamine pyrophosphate protein; Provisional 89.9
cd07038162 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom 89.62
cd02010177 TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto 89.54
PRK06276 586 acetolactate synthase catalytic subunit; Reviewed 89.37
cd03376235 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam 89.34
cd02004172 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam 89.19
PLN02573 578 pyruvate decarboxylase 89.18
TIGR03254 554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 88.7
PRK07449 568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 86.86
PRK06154 565 hypothetical protein; Provisional 86.01
KOG1185|consensus 571 85.7
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 84.65
TIGR03394 535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 84.34
cd02006202 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s 84.26
cd02009175 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa 84.22
TIGR00173 432 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex 84.0
cd02015186 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet 82.47
TIGR02177287 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta 82.46
cd0302773 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg 82.07
PRK11864300 2-ketoisovalerate ferredoxin oxidoreductase subuni 81.49
PRK09628277 oorB 2-oxoglutarate-acceptor oxidoreductase subuni 80.61
PF03102241 NeuB: NeuB family; InterPro: IPR013132 NeuB is the 80.18
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-72  Score=504.08  Aligned_cols=316  Identities=49%  Similarity=0.821  Sum_probs=301.4

Q ss_pred             chHHHHHHH----HHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecc
Q psy8699           8 TGFFQSSPS----QLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQF   82 (325)
Q Consensus         8 ~~~~~a~~~----~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~   82 (325)
                      ++|++|+++    .|++|++|+++++|++ +||+|+.+.+|.++||++|++|++|+|.+.+|+|.|+|+.|+||+++|+|
T Consensus         2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf   81 (324)
T COG0022           2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF   81 (324)
T ss_pred             ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence            456666665    8999999999999999 78999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhH
Q psy8699          83 ADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCI  162 (325)
Q Consensus        83 ~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~  162 (325)
                      .+|+..++|||.|++++++|+.++.+.|| +++|+|+|..-.++.||||+.+++|.++||++|++|+||.|++.+++.|+
T Consensus        82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~P-iviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI  160 (324)
T COG0022          82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVP-IVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI  160 (324)
T ss_pred             cchhHHHHHHHHHHHHHHhhhcCCceeCC-EEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHh
Confidence            99999999999999999999999999999 99999988765678899999999999999999999999999999999999


Q ss_pred             hCCCcEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccC
Q psy8699         163 KDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILP  242 (325)
Q Consensus       163 ~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P  242 (325)
                      +++.||++++||++|+....++|+++|.+|+||+.+.|+|.|+|||+||.|++.+++|+++|+++ ||+++|||++||+|
T Consensus       161 rd~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~-Gis~EVIDLRTl~P  239 (324)
T COG0022         161 RDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKE-GISAEVIDLRTLSP  239 (324)
T ss_pred             cCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhc-CCCeEEEeccccCc
Confidence            99999999999999997778899889999999999999999999999999999999999999999 99999999999999


Q ss_pred             CCHHHHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCC--cccccccCCCCHHHHHHHHH
Q psy8699         243 WDRETVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPF--PHIFEPFYIPDKWRCLEAVK  320 (325)
Q Consensus       243 ~d~~~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~--~~~~~~~~l~~~~~I~~~i~  320 (325)
                      +|.++|.++++||+++++|||.+..+|+|+++++.++|..+++|+.|+.|++|.+.|+  +..+|++.+|++++|+++++
T Consensus       240 lD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~av~  319 (324)
T COG0022         240 LDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAAVK  319 (324)
T ss_pred             cCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchhHHhhhCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999989999999999999885  46789999999999999999


Q ss_pred             HHhhC
Q psy8699         321 QITRY  325 (325)
Q Consensus       321 ~~~~~  325 (325)
                      ++++|
T Consensus       320 ~v~~~  324 (324)
T COG0022         320 KVLEF  324 (324)
T ss_pred             HHhhC
Confidence            99875

>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02683 pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>PRK09212 pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>KOG0524|consensus Back     alignment and domain information
>KOG0525|consensus Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>KOG0523|consensus Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain Back     alignment and domain information
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit Back     alignment and domain information
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2 Back     alignment and domain information
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type Back     alignment and domain information
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated Back     alignment and domain information
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>KOG0450|consensus Back     alignment and domain information
>KOG0451|consensus Back     alignment and domain information
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins Back     alignment and domain information
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins Back     alignment and domain information
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) Back     alignment and domain information
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) Back     alignment and domain information
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins Back     alignment and domain information
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria Back     alignment and domain information
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>KOG1185|consensus Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) Back     alignment and domain information
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) Back     alignment and domain information
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Back     alignment and domain information
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS Back     alignment and domain information
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions Back     alignment and domain information
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed Back     alignment and domain information
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
1dtw_B342 Human Branched-Chain Alpha-Keto Acid Dehydrogenase 1e-135
2j9f_B350 Human Branched-Chain Alpha-Ketoacid Dehydrogenase- 1e-135
1olx_B342 Roles Of His291-alpha And His146-beta' In The Reduc 1e-134
2bp7_B339 New Crystal Form Of The Pseudomonas Putida Branched 1e-77
1qs0_B338 Crystal Structure Of Pseudomonas Putida 2-Oxoisoval 2e-76
1um9_B324 Branched-chain 2-oxo Acid Dehydrogenase (e1) From T 8e-76
1ik6_A369 3d Structure Of The E1beta Subunit Of Pyruvate Dehy 3e-70
3duf_B325 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 1e-64
1w85_B324 The Crystal Structure Of Pyruvate Dehydrogenase E1 2e-64
2ozl_B341 Human Pyruvate Dehydrogenase S264e Variant Length = 1e-41
3exe_B329 Crystal Structure Of The Pyruvate Dehydrogenase (E1 1e-41
1ni4_B341 Human Pyruvate Dehydrogenase Length = 341 1e-34
3mos_A616 The Structure Of Human Transketolase Length = 616 3e-05
3ooy_A616 Crystal Structure Of Human Transketolase (Tkt) Leng 3e-05
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 342 Back     alignment and structure 
Iteration: 1

 Score =  476 bits (1226), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 216/297 (72%), Positives = 267/297 (89%)
Query: 29  EDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYIFP 88
           EDV FGGVFRC++GL++KYGK RVFNTPL EQGIVGFGIG+AV+GATAIAEIQFADYIFP
Sbjct: 46  EDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFP 105
Query: 89  AFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIP 148
           AFDQIVNEAAKYRYRSG+ F+CG+LTIR+P   VGHGALYHSQSPEA+FAH PGIKVVIP
Sbjct: 106 AFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIP 165
Query: 149 RGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLI 208
           R P++AKGLLLSCI+DK+PCIFFEPK+LYRAA E+VP + Y +PL +A+++  G+DVTL+
Sbjct: 166 RSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLV 225
Query: 209 GWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEAPLTS 268
            WGTQVHV+REVA +AKE+LGVSCEVIDL +I+PWD +T+ +S  KTGR++I+HEAPLT 
Sbjct: 226 AWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTG 285
Query: 269 GFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITRY 325
           GF +E+++++Q++CFL+LEAPI RV GYDTPFPHIFEPFYIPDKW+C +A++++  Y
Sbjct: 286 GFASEISSTVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALRKMINY 342
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 350 Back     alignment and structure
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-chain Alpha-ketoacid Dehydrogenase Length = 342 Back     alignment and structure
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 339 Back     alignment and structure
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 338 Back     alignment and structure
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 324 Back     alignment and structure
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate Dehydrogenase From The Archeon Pyrobaculum Aerophilum Length = 369 Back     alignment and structure
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 325 Back     alignment and structure
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 324 Back     alignment and structure
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant Length = 341 Back     alignment and structure
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 329 Back     alignment and structure
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase Length = 341 Back     alignment and structure
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616 Back     alignment and structure
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 0.0
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 0.0
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 0.0
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 0.0
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 0.0
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 1e-130
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 2e-07
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 6e-07
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 1e-06
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342 Back     alignment and structure
 Score =  549 bits (1417), Expect = 0.0
 Identities = 219/301 (72%), Positives = 271/301 (90%)

Query: 25  VLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFAD 84
           V+FGEDV FGGVFRC++GL++KYGK RVFNTPL EQGIVGFGIG+AV+GATAIAEIQFAD
Sbjct: 42  VIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFAD 101

Query: 85  YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIK 144
           YIFPAFDQIVNEAAKYRYRSG+ F+CG+LTIR+P   VGHGALYHSQSPEA+FAH PGIK
Sbjct: 102 YIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIK 161

Query: 145 VVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTD 204
           VVIPR P++AKGLLLSCI+DK+PCIFFEPK+LYRAA E+VP + Y +PL +A+++  G+D
Sbjct: 162 VVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSD 221

Query: 205 VTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRETVFQSARKTGRVIIAHEA 264
           VTL+ WGTQVHV+REVA +AKE+LGVSCEVIDL +I+PWD +T+ +S  KTGR++I+HEA
Sbjct: 222 VTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEA 281

Query: 265 PLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFPHIFEPFYIPDKWRCLEAVKQITR 324
           PLT GF +E+++++Q++CFL+LEAPI RV GYDTPFPHIFEPFYIPDKW+C +A++++  
Sbjct: 282 PLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALRKMIN 341

Query: 325 Y 325
           Y
Sbjct: 342 Y 342
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324 Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369 Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338 Back     alignment and structure
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324 Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Length = 341 Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629 Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 100.0
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 100.0
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 100.0
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 100.0
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 100.0
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 100.0
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 100.0
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 100.0
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 100.0
3m49_A690 Transketolase; alpha-beta-alpha sandwich, csgid, t 100.0
3rim_A700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 100.0
3l84_A632 Transketolase; TKT, structural genomics, center fo 100.0
3uk1_A711 Transketolase; structural genomics, seattle struct 100.0
1gpu_A680 Transketolase; transferase(ketone residues); HET: 100.0
3kom_A663 Transketolase; rossmann fold, csgid, transferase, 100.0
2r8o_A669 Transketolase 1, TK 1; reaction intermediate, calc 100.0
1itz_A675 Transketolase; calvin cycle, cofactor, thiamine py 100.0
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 100.0
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 100.0
2jgd_A933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
2yic_A868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
2xt6_A1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
2qtc_A886 Pyruvate dehydrogenase E1 component; thiamin dipho 100.0
3ahc_A845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 100.0
1yd7_A395 2-keto acid:ferredoxin oxidoreductase subunit alph 99.95
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 99.87
3ju3_A118 Probable 2-oxoacid ferredoxin oxidoreductase, ALP; 99.69
1q6z_A 528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 95.38
1v5e_A 590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 95.34
2pan_A 616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 95.29
2q28_A 564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 95.17
2uz1_A 563 Benzaldehyde lyase; thiamine diphosphate, thiamine 93.97
1ybh_A 590 Acetolactate synthase, chloroplast; acetohydroxyac 93.85
1ozh_A 566 ALS, acetolactate synthase, catabolic; acetohydrox 93.83
1t9b_A 677 Acetolactate synthase, mitochondrial; acetohydroxy 93.2
2c31_A 568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 93.07
3eya_A 549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 93.07
2wvg_A 568 PDC, pyruvate decarboxylase; thiamine diphosphate, 92.99
2vbi_A 566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 92.86
2iht_A 573 Carboxyethylarginine synthase; thiamin diphosphate 92.3
4feg_A 603 Pyruvate oxidase; carbanion, structure activity re 92.19
2nxw_A 565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 92.04
2pgn_A 589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 92.03
3hww_A 556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 90.61
2x7j_A 604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 89.02
2vk8_A 563 Pyruvate decarboxylase isozyme 1; asymmetric activ 87.66
2vbf_A 570 Branched-chain alpha-ketoacid decarboxylase; KDCA, 86.32
3lq1_A 578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 85.54
2lqo_A92 Putative glutaredoxin RV3198.1/MT3292; TRX fold, o 83.55
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 82.82
1ovm_A 552 Indole-3-pyruvate decarboxylase; thiamine diphosph 81.48
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Back     alignment and structure
Probab=100.00  E-value=4.6e-64  Score=472.11  Aligned_cols=314  Identities=40%  Similarity=0.679  Sum_probs=277.5

Q ss_pred             chHHHHHHHHHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEecccccH
Q psy8699           8 TGFFQSSPSQLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFADYI   86 (325)
Q Consensus         8 ~~~~~a~~~~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it~~~F~   86 (325)
                      ..++++|.+++++|++++++++|++ .+|+++.+.+|.++|||+||+|+||+|++|+++|+|+|++|+|||+++||++|+
T Consensus         7 ~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~~~F~   86 (324)
T 1w85_B            7 QAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFV   86 (324)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSSGGGG
T ss_pred             HHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecchhHH
Confidence            4566777779999999999999998 456666688999999889999999999999999999999999999986899999


Q ss_pred             HHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHhHhCCC
Q psy8699          87 FPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSCIKDKD  166 (325)
Q Consensus        87 ~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a~~~~~  166 (325)
                      +|++|||++++++++|+..+...++ ++++.+.|..+.|++||+++|+++++++||++|++|+|++|++.++++|+++++
T Consensus        87 ~~a~dqi~~~~a~~~~~~~g~~~~p-vv~~~~~g~~~~~g~~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~~~~  165 (324)
T 1w85_B           87 YEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDND  165 (324)
T ss_dssp             GGTHHHHHTTGGGHHHHTTTSSCCC-CEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHhhhccCCCcCC-EEEEEeccCCCCCCCcccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence            9999999999998777755444455 555555565667788888999999999999999999999999999999999999


Q ss_pred             cEEEecccccccccccCCCCCCcccCCCceeEeeeCCcEEEEEechhHHHHHHHHHHHHhhcCCcEEEEecccccCCCHH
Q psy8699         167 PCIFFEPKVLYRAAVEDVPEDYYELPLDKADILVAGTDVTLIGWGTQVHVLREVAGLAKEQLGVSCEVIDLVSILPWDRE  246 (325)
Q Consensus       167 Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~ii~~G~~~~~a~~A~~~L~~~~gi~~~vi~~~~l~P~d~~  246 (325)
                      |++||+||+++|...+.++.+++.+++||++++++|.|++||++|+++..|++|++.|+++ |++++||++++++|||++
T Consensus       166 Pv~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~-Gi~v~vi~~~~l~P~d~~  244 (324)
T 1w85_B          166 PVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKE-GISAEVVDLRTVQPLDIE  244 (324)
T ss_dssp             CEEEEEETTTSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHT-TCCEEEEECSEEESCCHH
T ss_pred             CEEEEechHhcCCCCCCCCCccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhc-CCCEEEEEeeeecCCCHH
Confidence            9999999999987656666556778899999999999999999999999999999999998 999999999999999999


Q ss_pred             HHHHHHhccCcEEEEecCCcCCChHHHHHHHHHhhccccCCCCeEEEcccCCCCc---ccccccCCCCHHHHHHHHHHHh
Q psy8699         247 TVFQSARKTGRVIIAHEAPLTSGFGAELAASIQDKCFLSLEAPIRRVTGYDTPFP---HIFEPFYIPDKWRCLEAVKQIT  323 (325)
Q Consensus       247 ~l~~~~~~~~~vivvEe~~~~gglg~~v~~~l~e~~~~~~~~~v~~~~g~~~~~~---~~~~~~~l~~~~~I~~~i~~~~  323 (325)
                      .|.++++++++++++|||...|||+++|++++.+.++..++.|+.++ |.++.|.   .+++++++ |+++|+++|++++
T Consensus       245 ~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~v-g~~d~~~~~~~l~~~~gl-~~~~I~~~i~~~l  322 (324)
T 1w85_B          245 TIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRV-AAPDTVYPFAQAESVWLP-NFKDVIETAKKVM  322 (324)
T ss_dssp             HHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEE-EECSSSSCCGGGHHHHSC-CHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEE-ecCCcCCCcHHHHHHhCc-CHHHHHHHHHHHh
Confidence            99999999999999999988999999999999987665566789888 5544332   45677788 9999999999999


Q ss_pred             hC
Q psy8699         324 RY  325 (325)
Q Consensus       324 ~~  325 (325)
                      +|
T Consensus       323 ~~  324 (324)
T 1w85_B          323 NF  324 (324)
T ss_dssp             TC
T ss_pred             hC
Confidence            87
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Back     alignment and structure
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum} Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 325
d2bfdb1203 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid 8e-52
d1qs0b1204 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase 2e-50
d1w85b1192 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, 2e-49
d1ik6a1191 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate deh 2e-48
d2ozlb1192 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate deh 2e-45
d1umdb1186 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid 3e-39
d2bfdb2138 c.48.1.2 (B:205-342) Branched-chain alpha-keto aci 4e-36
d1qs0b2134 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenas 3e-31
d1umdb2137 c.48.1.2 (B:188-324) Branched-chain alpha-keto aci 5e-29
d1w85b2132 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-bet 3e-27
d1ik6a2135 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate d 5e-25
d2ozlb2138 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate d 3e-23
d2c42a3157 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoredu 1e-06
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (425), Expect = 8e-52
 Identities = 133/163 (81%), Positives = 152/163 (93%)

Query: 25  VLFGEDVGFGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQFAD 84
           V+FGEDV FGGVFRC++GL++KYGK RVFNTPL EQGIVGFGIG+AV+GATAIAEIQFAD
Sbjct: 41  VIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFAD 100

Query: 85  YIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIK 144
           YIFPAFDQIVNEAAKYRYRSG+ F+CG+LTIR+P   VGHGALYHSQSPEA+FAH PGIK
Sbjct: 101 YIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIK 160

Query: 145 VVIPRGPYKAKGLLLSCIKDKDPCIFFEPKVLYRAAVEDVPED 187
           VVIPR P++AKGLLLSCI+DK+PCIFFEPK+LYRAA E+VP +
Sbjct: 161 VVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIE 203
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Length = 204 Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 192 Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 191 Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Length = 186 Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Length = 134 Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 137 Back     information, alignment and structure
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 132 Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 135 Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Length = 157 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d1qs0b1204 2-oxoisovalerate dehydrogenase (E1B), Pyr module { 100.0
d2bfdb1203 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d1ik6a1191 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1w85b1192 Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d 100.0
d1umdb1186 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d2ozlb1192 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1itza2192 Transketolase (TK), Pyr module {Maize (Zea mays) [ 100.0
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 100.0
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 100.0
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 100.0
d2bfdb2138 Branched-chain alpha-keto acid dehydrogenase {Huma 99.97
d1umdb2137 Branched-chain alpha-keto acid dehydrogenase {Ther 99.96
d1ik6a2135 E1-beta subunit of pyruvate dehydrogenase, C-domai 99.95
d1w85b2132 Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d 99.94
d1qs0b2134 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu 99.94
d2ozlb2138 E1-beta subunit of pyruvate dehydrogenase, C-domai 99.94
d1gpua3146 Transketolase (TK), C-domain {Baker's yeast (Sacch 99.66
d2r8oa3136 Transketolase (TK), C-domain {Escherichia coli [Ta 99.62
d2c42a3157 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 99.44
d1r9ja3143 Transketolase (TK), C-domain {Leishmania mexicana 99.38
d1itza3136 Transketolase (TK), C-domain {Maize (Zea mays) [Ta 99.28
d2ieaa1230 Pyruvate dehydrogenase E1 component, Pyr module {E 99.06
d2c42a1257 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 98.89
d2ieaa3186 Pyruvate dehydrogenase E1 component, C-domain {Esc 98.51
d2djia2184 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 96.89
d1q6za2180 Benzoylformate decarboxylase {Pseudomonas putida [ 96.62
d2ez9a2174 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 96.42
d1t9ba2175 Acetohydroxyacid synthase catalytic subunit {Baker 96.25
d1ozha2181 Catabolic acetolactate synthase {Klebsiella pneumo 95.92
d1pvda2180 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 95.88
d1zpda2186 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 95.72
d1ybha2195 Acetohydroxyacid synthase catalytic subunit {Thale 95.01
d2ji7a3183 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 94.71
d1ovma2178 Indole-3-pyruvate decarboxylase {Enterobacter cloa 94.68
d2ihta2186 Carboxyethylarginine synthase {Streptomyces clavul 94.66
d2ji7a2188 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 94.49
d1t9ba3227 Acetohydroxyacid synthase catalytic subunit {Baker 91.64
d1ozha3192 Catabolic acetolactate synthase {Klebsiella pneumo 91.44
d1q6za3183 Benzoylformate decarboxylase {Pseudomonas putida [ 87.42
d2djia3229 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 82.16
d1vmea1148 ROO-like flavoprotein TM0755, C-terminal domain {T 80.3
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=7.2e-44  Score=309.16  Aligned_cols=194  Identities=48%  Similarity=0.796  Sum_probs=173.3

Q ss_pred             cchHHHHHHH----HHhcCCCEEEEcCcCC-CCcccccchhHHHHhCCCceeechhhHHHHHHHHHHHhccCCeEEEEec
Q psy8699           7 WTGFFQSSPS----QLLSSQGGVLFGEDVG-FGGVFRCSLGLQEKYGKHRVFNTPLSEQGIVGFGIGLAVSGATAIAEIQ   81 (325)
Q Consensus         7 ~~~~~~a~~~----~~~~~~~vv~~~~D~~-~~g~~~~~~~~~~~~~p~r~~~~gIaE~~~v~~a~GlA~~G~~p~~~it   81 (325)
                      .++|++|+++    ++++|++++++++|++ .||+|+++++|.++|||+|++|+||+|++++|+|+|+|++|+|||++++
T Consensus         4 ~m~~~~ai~~al~e~m~~d~~v~~~Gedv~~~Gg~f~~t~gl~~kfgp~Rv~dtpIaE~~~vG~A~GlA~~G~rPvve~~   83 (204)
T d1qs0b1           4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQ   83 (204)
T ss_dssp             ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred             eehHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccchHHHHHHhhhheecccccceeehhHHHHHhcCCCcEEEEEE
Confidence            4566666665    8999999999999997 6788998999999999999999999999999999999999999999998


Q ss_pred             ccccHHHHHHHHHHHHhhcccccCCceeccceEEeccCccCCCCCCCCChhHHHHHcCCCCcEEEeeCCHHHHHHHHHHh
Q psy8699          82 FADYIFPAFDQIVNEAAKYRYRSGNQFSCGNLTIRAPCMAVGHGALYHSQSPEAYFAHTPGIKVVIPRGPYKAKGLLLSC  161 (325)
Q Consensus        82 ~~~F~~ra~dqi~~~~~~~~~~~~~~~~~~~~v~~~~~g~~g~g~th~~~~d~~~~~~ip~~~v~~P~~~~e~~~~~~~a  161 (325)
                      |.+|+.+++|||+|++++.+|+..+...++ +++|++.|....+++|||++++++|+++||++|++|+|+.|++.+++.|
T Consensus        84 ~~df~~~a~dqi~n~~ak~~~~~~~~~~~p-~vir~~~g~~~~~g~~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~~a  162 (204)
T d1qs0b1          84 FADYFYPASDQIVSEMARLRYRSAGEFIAP-LTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIAS  162 (204)
T ss_dssp             CGGGCGGGHHHHHTTTTTHHHHTTTSSCCC-CEEEEEECCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHH
T ss_pred             ecchhhHHHHHHHHHHHHhhcccccCcccc-eEEEcCcccccCcccccccCHHHHHhcCCCcEEEeeCCHHHHHHHHHHH
Confidence            999999999999999999999998888887 8999887766677889999999999999999999999999999999999


Q ss_pred             HhCCCcEEEecccccccccccCCCCCCcccCCCc--eeEeeeC
Q psy8699         162 IKDKDPCIFFEPKVLYRAAVEDVPEDYYELPLDK--ADILVAG  202 (325)
Q Consensus       162 ~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~gk--~~~~~~g  202 (325)
                      +++++|+++++||.+|+.. .+++.+....|+|+  +.++++|
T Consensus       163 ~~~~~Pvi~~e~k~ly~~~-~~~~~~~~~~p~~~~~~~~v~~G  204 (204)
T d1qs0b1         163 IECDDPVIFLEPKRLYNGP-FDGHHDRPVTPWSKHPHSAVPDG  204 (204)
T ss_dssp             HHSSSCEEEEEEGGGSSSC-CCSCSSSCCCCSTTSTTCEEESS
T ss_pred             HhCCCcEEEEeeHHHhCCC-ccCCCccCCCCcccCccccCCCC
Confidence            9999999999999999875 45555556667776  5666654
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure