Psyllid ID: psy8709

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MSVEEMKQCVASRLDSMDMHADSDDNDASVKDCYQRNWYKQAVTSVIVRSVILVLSVTIMSPPACSDLEEKNAEIDMRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYAE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHccccccccccEEEcccccccHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHccccccEEEEEEcccccccccccccEEEEcccccccccHHHHHHHHHHHHHccccccEEEccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHEEEEHHEEEEcEEEEcccccHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccEEccHHHccHHHHHHHcHHHHHHHHHHHHccHHHHcccEEEEEcccccHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHccHHHHcccEEEEEcccccHHHHHHHHccccEEEEEEcccHHHHHHHHHHHccccccEEEEEccccccccccccEEEEEEcccEEcEcEcccHHHHHHHHHHHEEEEEEEEccEEEEEEEEEccc
Coil and Loop (DISEMBL)
MSVEEMKQCVASRLdsmdmhadsddndasvkdcyqrnwykqAVTSVIVRSVILVLSVTimsppacsdleeknaeidMRNEDIAQMRHLMQDMLNkkeedeegenktrrhdkyyfnsyedAHIHAEMIKDTVRTESYKSAIlnnnslfnnkhvidvgagTGILSIFAAQAGAAKVFAIeksgtpirtesYKSAILNnkslfnnkhvidvgagTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLedvelpveSVDIIISEWMGYFLLFETMIDSVIDARNrflkpdgvvcpnrftlslcgayae
Flexible Loop (DISEMBL)
MSVEEMKQCVASRLDSMDMHADSDDNDASVKDCYQRNWYKQAVTSVIVRSVILVLSVTIMSPPACSDLEEKNAEIDMRNEDIAQMRHLMQDMLNKkeedeegenktrrhdkyyfnSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLledvelpvESVDIIISEWMGYFLLFETMIDSVIDARNRFlkpdgvvcpnrftlslcgayae
Low Complexity Region (SEG)
MSVEEMKQCVASRLDSMDMHADSDDNDASVKDCYQRNWYKQAvtsvivrsvilvlsvtiMSPPACSDLEEKNAEIDMRNEDIAQMRHLMQDMLnkkeedeegenkTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFaaqagaakvfaIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFaaqagaakvfaIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYAE
Disordered region (IsUnstruct)
*****************************VKDCYQRNWYKQAVTSVIVRSVILVLSVTIMS*************************************************KYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAY**
Disordered Region (DISOPRED)
*************LDSMDMHADSDDNDASVKDCYQRNWYKQAVTSVIVRSVILVLS*******************************************************YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYAE
Disordered Region (DISEMBL)
**********ASRLDSMDMHADSDDNDASVKDCYQRNWYKQAVTSVIVRSVILVLSVTIMSPPACSDLEEKNAEIDMRNEDIAQMRHLMQDMLNK***********RRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYAE
Disordered Region (DISPRO)
**************************DASVKDCYQRNWYKQAVTSVIVRSVILVLSVTIMSPPACSDLEEKNAEIDMRNEDIAQMRHLMQDMLN*************RHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVEEMKQCVASRLDSMDMHADSDDNDASVKDCYQRNWYKQAVTSVIVRSVILVLSVTIMSPPACSDLEEKNAEIDMRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
O60678	531	Protein arginine N-methyl	yes	N/A	0.407	0.244	0.553	8e-36
O70467	528	Protein arginine N-methyl	yes	N/A	0.407	0.246	0.546	5e-35
Q922H1	532	Protein arginine N-methyl	yes	N/A	0.407	0.244	0.538	1e-34
Q9URX7	340	Probable protein arginine	yes	N/A	0.407	0.382	0.492	4e-34
Q08A71	435	Probable protein arginine	yes	N/A	0.404	0.296	0.515	1e-33
Q28F07	351	Protein arginine N-methyl	no	N/A	0.401	0.364	0.515	3e-33
Q6VRB0	351	Protein arginine N-methyl	N/A	N/A	0.401	0.364	0.515	3e-33
Q8AV13	369	Protein arginine N-methyl	N/A	N/A	0.407	0.352	0.507	3e-33
Q0J2C6	387	Probable protein arginine	yes	N/A	0.467	0.385	0.400	4e-33
A2Z0C0	387	Probable protein arginine	N/A	N/A	0.467	0.385	0.400	4e-33

>sp|O60678|ANM3_HUMAN Protein arginine N-methyltransferase 3 OS=Homo sapiens GN=PRMT3 PE=1 SV=3

 Score =  151 bits (381), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 97/130 (74%)

Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDII 243
           IRTESY+  I  N  +F +K V+DVG GTGILS+FAA+AGA KV  +++S+I Y+ +DII
Sbjct: 238 IRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDII 297

Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           R NK +  I +    +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A+N++L   G 
Sbjct: 298 RLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGS 357

Query: 304 VCPNRFTLSL 313
           V P+  T+SL
Sbjct: 358 VYPDICTISL 367

Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|O70467|ANM3_RAT Protein arginine N-methyltransferase 3 OS=Rattus norvegicus GN=Prmt3 PE=1 SV=1

 Score =  148 bits (374), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/130 (54%), Positives = 98/130 (75%)

Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDII 243
           +RTESY+  I  N  +F +K V+DVG GTGILS+FAA+AGA KV A+++S+I Y+ +DII
Sbjct: 235 VRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAMDII 294

Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           R NK +  I +    +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A++++L   G 
Sbjct: 295 RLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFESMLDSVLYAKSKYLAKGGS 354

Query: 304 VCPNRFTLSL 313
           V P+  T+SL
Sbjct: 355 VYPDICTISL 364

Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q922H1|ANM3_MOUSE Protein arginine N-methyltransferase 3 OS=Mus musculus GN=Prmt3 PE=1 SV=2

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 97/130 (74%)

Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDII 243
           +RTESY+  I  N  +F +K V+DVG GTGILS+FAA+ GA KV A+++S+I Y+ +DII
Sbjct: 235 VRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKVGAKKVIAVDQSEILYQAMDII 294

Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           R NK +  I +    +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A++++L   G 
Sbjct: 295 RLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFESMLDSVLYAKSKYLAKGGS 354

Query: 304 VCPNRFTLSL 313
           V P+  T+SL
Sbjct: 355 VYPDICTISL 364

Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9URX7|ANM1_SCHPO Probable protein arginine N-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC890.07c PE=1 SV=2

 Score =  145 bits (366), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 97/130 (74%)

Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDII 243
           +RT SY+ AI+ N  LF +K V+DVG GTGILS+F A+AGA  V+ ++ S+I ++ + I+
Sbjct: 37  VRTLSYRDAIMQNPHLFRDKIVLDVGCGTGILSMFCARAGAKHVYGVDMSEIIHKAVQIV 96

Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
             NK   +I +    +E+++LPVE VDII+SEWMGYFLL+E+M+D+V+ AR+R+L PDG+
Sbjct: 97  EVNKLSDRITLIQGKMEEIQLPVEKVDIIVSEWMGYFLLYESMLDTVLVARDRYLAPDGL 156

Query: 304 VCPNRFTLSL 313
           + P+R  + L
Sbjct: 157 LFPDRAQIQL 166

Probably methylates the guanidino nitrogens of arginyl residues in some proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q08A71|ANM6_ARATH Probable protein arginine N-methyltransferase 6 OS=Arabidopsis thaliana GN=PRMT6 PE=2 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 96/130 (73%), Gaps = 1/130 (0%)

Query: 185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIR 244
           RTE+Y+ AI+ ++SL   K V+DVG GTGILSIF AQAGA +V+A++ SDIA +  ++++
Sbjct: 102 RTETYREAIMQHQSLIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQAKEVVK 161

Query: 245 KNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
            N    ++ V H  +EDVE+  E VD+IISEWMGY LL+E+M+ SVI AR+R+LKP G++
Sbjct: 162 ANGLSDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKPGGLI 220

Query: 305 CPNRFTLSLC 314
            P+  TL + 
Sbjct: 221 LPSHATLYMA 230

Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q28F07|ANM1_XENTR Protein arginine N-methyltransferase 1 OS=Xenopus tropicalis GN=prmt1 PE=2 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/128 (51%), Positives = 97/128 (75%)

Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDII 243
           +RT +Y++++ +N+ LF +K V+DVG+GTGIL +FAA+AGA KV  IE S I+   I I+
Sbjct: 51  VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIV 110

Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + NK D  + +    +E+VELPVE VDIIISEWMGY L +E+M+++VI AR+++L PDG+
Sbjct: 111 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGL 170

Query: 304 VCPNRFTL 311
           + P+R TL
Sbjct: 171 IFPDRATL 178

Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice (By similarity). Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

>sp|Q6VRB0|ANM1B_XENLA Protein arginine N-methyltransferase 1-B OS=Xenopus laevis GN=prmt1-b PE=2 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/128 (51%), Positives = 97/128 (75%)

Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDII 243
           +RT +Y++++ +N+ LF +K V+DVG+GTGIL +FAA+AGA KV  IE S I+   I I+
Sbjct: 51  VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIV 110

Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + NK D  + +    +E+VELPVE VDIIISEWMGY L +E+M+++VI AR+++L PDG+
Sbjct: 111 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLNPDGL 170

Query: 304 VCPNRFTL 311
           + P+R TL
Sbjct: 171 IFPDRATL 178

Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators (By similarity). Methylates ilf3 to regulate its DNA-binding activity. Methylates histone H4. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

>sp|Q8AV13|ANM1A_XENLA Protein arginine N-methyltransferase 1-A OS=Xenopus laevis GN=prmt1-a PE=1 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 98/130 (75%)

Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDII 243
           +RT +Y++++ +N+ LF +K V+DVG+GTGIL +FAA+AGA KV  IE S I+   I I+
Sbjct: 69  VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAKKVIGIECSSISDYAIKIV 128

Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + NK D  + +    +E+VELPVE VDIIISEWMGY L +E+M+++VI AR+++L PDG+
Sbjct: 129 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIYARDKWLTPDGL 188

Query: 304 VCPNRFTLSL 313
           + P+R TL +
Sbjct: 189 IFPDRATLYI 198

Arginine methyltransferase that methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in target proteins. Constitutes the main enzyme that mediates monomethylation and asymmetric dimethylation of histone H4 'Arg-4' (H4R3me1 and H4R3me2a, respectively), a specific tag for epigenetic transcriptional activation. Methylates ilf3 to regulate its DNA-binding activity. Required for neural induction, playing a key role in the control of epidermal versus neural cell fate choice. Methylates cirbp to regulate its subcellular location. Acts transiently during metamorphosis as a transcription coactivator, enhancing thyroid hormone (T3) receptor (TR)-mediated transcription by enhancing TR binding to the T3 response element (TRE), and histone modification through recruitment of other coactivators.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 5

>sp|Q0J2C6|ANM1_ORYSJ Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=PRMT1 PE=2 SV=1

 Score =  142 bits (357), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 112/202 (55%), Gaps = 53/202 (26%)

Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA 171
           YYF+SY    IH EM+KD VRT+SY++ I  N+ LF +K V+DVGAGTGILS+F A+AGA
Sbjct: 68  YYFDSYSHFGIHEEMLKDVVRTKSYQNVITQNSFLFKDKIVLDVGAGTGILSLFCAKAGA 127

Query: 172 AKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
             V+AIE S                                                  +
Sbjct: 128 KHVYAIECS--------------------------------------------------Q 137

Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
            +D+A E   I++ N Y + I V    +E++ELPV  VD+IISEWMGYFLLFE M+++V+
Sbjct: 138 MADMAKE---IVKTNGYSNVITVIKGKVEEIELPVPKVDVIISEWMGYFLLFENMLNTVL 194

Query: 292 DARNRFLKPDGVVCPNRFTLSL 313
            AR+++L   GVV P++ +L L
Sbjct: 195 YARDKWLADGGVVLPDKASLHL 216

Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A2Z0C0|ANM1_ORYSI Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. indica GN=PRMT1 PE=2 SV=1

 Score =  142 bits (357), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 112/202 (55%), Gaps = 53/202 (26%)

Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA 171
           YYF+SY    IH EM+KD VRT+SY++ I  N+ LF +K V+DVGAGTGILS+F A+AGA
Sbjct: 68  YYFDSYSHFGIHEEMLKDVVRTKSYQNVITQNSFLFKDKIVLDVGAGTGILSLFCAKAGA 127

Query: 172 AKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
             V+AIE S                                                  +
Sbjct: 128 KHVYAIECS--------------------------------------------------Q 137

Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
            +D+A E   I++ N Y + I V    +E++ELPV  VD+IISEWMGYFLLFE M+++V+
Sbjct: 138 MADMAKE---IVKTNGYSNVITVIKGKVEEIELPVPKVDVIISEWMGYFLLFENMLNTVL 194

Query: 292 DARNRFLKPDGVVCPNRFTLSL 313
            AR+++L   GVV P++ +L L
Sbjct: 195 YARDKWLADGGVVLPDKASLHL 216

Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues present in a glycine and arginine-rich domain (can methylate histones).

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
194767701	520	GF11802 [Drosophila ananassae] gi|190619	0.623	0.382	0.386	1e-38
91080947	505	PREDICTED: similar to arginine n-methylt	0.611	0.386	0.377	2e-38
195501408	516	GE26400 [Drosophila yakuba] gi|194183884	0.623	0.385	0.378	7e-38
195328821	516	GM25795 [Drosophila sechellia] gi|194120	0.623	0.385	0.375	3e-37
194900938	517	GG20792 [Drosophila erecta] gi|190651715	0.623	0.384	0.378	3e-37
195570740	477	GD20372 [Drosophila simulans] gi|1941992	0.623	0.417	0.375	3e-37
45360587	519	protein arginine methyltransferase 3 [Xe	0.567	0.348	0.390	5e-37
260825710	521	hypothetical protein BRAFLDRAFT_117306 [	0.407	0.249	0.553	5e-37
405962860	540	Protein arginine N-methyltransferase 3 [	0.407	0.240	0.553	6e-37
148233213	519	protein arginine methyltransferase 3 [Xe	0.539	0.331	0.385	2e-36

>gi|194767701|ref|XP_001965953.1| GF11802 [Drosophila ananassae] gi|190619796|gb|EDV35320.1| GF11802 [Drosophila ananassae]

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/264 (38%), Positives = 138/264 (52%), Gaps = 65/264 (24%)

Query: 63  PACSDLEEKNAE----IDMRNEDIAQMRHLMQDMLNK----KEEDEEGENKTRRH---DK 111
           P+  +L ++ AE    +   NED+ +MR   +++L K    KE    G+   R +   DK
Sbjct: 151 PSVPELLQQIAEQAKLLQQANEDMERMRSDYKELLQKVHGDKESKPAGDAVPRNNPNWDK 210

Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA 171
            YFNSY    IH EM+ D VRT +Y+SA+L N +  N K V+DVG GTGILSIFA+QAGA
Sbjct: 211 EYFNSYSHFGIHHEMLSDKVRTSTYRSALLENKAAVNGKAVLDVGCGTGILSIFASQAGA 270

Query: 172 AKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
           A+V  I+ S                                                   
Sbjct: 271 ARVVGIDNS--------------------------------------------------- 279

Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
             DI Y  +DI+RKNK  + +++    LED ELP    DIIISEWMGYFLL+E+M+DS+I
Sbjct: 280 --DIVYTAMDIVRKNKVQN-VQLVKGRLEDTELPEAKYDIIISEWMGYFLLYESMLDSII 336

Query: 292 DARNRFLKPDGVVCPNRFTLSLCG 315
            AR   L P+G++ P+R TLS+ G
Sbjct: 337 YAREHHLNPNGIILPSRCTLSILG 360

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080947|ref|XP_974375.1| PREDICTED: similar to arginine n-methyltransferase [Tribolium castaneum] gi|270005950|gb|EFA02398.1| hypothetical protein TcasGA2_TC008078 [Tribolium castaneum]

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/249 (37%), Positives = 135/249 (54%), Gaps = 54/249 (21%)

Query: 68  LEEKNAEIDMRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRHDKYYFNSYEDAHIHAEMI 127
           L+ K   +++  +DI +M+ + +  +  ++  E+  + T  +D  YF+SY    IH EM+
Sbjct: 152 LKHKCTLLELAVKDIEKMKKITRTFVESRDVPEKPFHVTG-YDSDYFHSYSHFGIHHEML 210

Query: 128 KDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTE 187
            D VRTESY+ AILNN+  F +K V+DVG GTGILS+F+A+AGA+KV  I++S       
Sbjct: 211 NDRVRTESYRDAILNNSDSFKDKIVLDVGCGTGILSLFSAKAGASKVIGIDQS------- 263

Query: 188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNK 247
                                                         ++ Y+ +DIIR+N 
Sbjct: 264 ----------------------------------------------EVVYKAMDIIRENN 277

Query: 248 YDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN 307
           Y   I +    +ED  LPVE VDII+SEWMGYFLLFE M+DS I AR+R+L P G++ PN
Sbjct: 278 YYDTIHLMKGRIEDTNLPVEKVDIIVSEWMGYFLLFEGMLDSFIHARDRYLAPGGLLLPN 337

Query: 308 RFTLSLCGA 316
           R  L+L G 
Sbjct: 338 RCNLNLIGC 346

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195501408|ref|XP_002097783.1| GE26400 [Drosophila yakuba] gi|194183884|gb|EDW97495.1| GE26400 [Drosophila yakuba]

 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 138/264 (52%), Gaps = 65/264 (24%)

Query: 63  PACSDLEEKNAE----IDMRNEDIAQMRHLMQDMLNKKEEDEE--GENKTRRH-----DK 111
           P+  +L+++ AE    +   NED+ +MR+  + +L K   DEE  G NK+        D 
Sbjct: 147 PSVPELQQRIAEQSQLLQQANEDMERMRNDFKALLQKVHGDEESKGSNKSVPRNNACLDN 206

Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA 171
            YF SY    IH EM+ D VRT +Y++++L N +    K V+DVG GTGILSIFA++AGA
Sbjct: 207 EYFKSYSHFGIHHEMLSDKVRTSTYRASLLQNEAAVRGKTVLDVGCGTGILSIFASKAGA 266

Query: 172 AKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
           A+V  I+ S                                                   
Sbjct: 267 ARVVGIDNS--------------------------------------------------- 275

Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
             DI Y  +DIIRKNK ++ +E+    LED +LP    DIIISEWMGYFLL+E+M+DS+I
Sbjct: 276 --DIVYTAMDIIRKNKVEN-VELIKGRLEDTDLPEAKYDIIISEWMGYFLLYESMLDSII 332

Query: 292 DARNRFLKPDGVVCPNRFTLSLCG 315
            AR   L P+G++ P+R TLSL G
Sbjct: 333 YARENHLNPNGIILPSRCTLSLLG 356

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195328821|ref|XP_002031110.1| GM25795 [Drosophila sechellia] gi|194120053|gb|EDW42096.1| GM25795 [Drosophila sechellia]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/264 (37%), Positives = 139/264 (52%), Gaps = 65/264 (24%)

Query: 63  PACSDLEEKNAE----IDMRNEDIAQMRHLMQDMLNKKEEDEE--GENKTRRH-----DK 111
           P+  +L+++ AE    +   NED+ +MR+  + +L K   D E  G N++        D 
Sbjct: 147 PSVLELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHADGEPKGSNQSVPRNNVCLDN 206

Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA 171
            YF SY    IH EM+ D VRT +Y++++L N ++   K V+DVG GTGILSIFA++AGA
Sbjct: 207 EYFKSYSHFGIHHEMLSDEVRTSTYRASLLQNEAVVRGKTVLDVGCGTGILSIFASKAGA 266

Query: 172 AKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
           A+V  I+ S                                                   
Sbjct: 267 ARVVGIDNS--------------------------------------------------- 275

Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
             DI Y  +DIIRKNK ++ +E+    LED +LP    DIIISEWMGYFLL+E+M+DS+I
Sbjct: 276 --DIVYTAMDIIRKNKIEN-VELIKGRLEDTDLPEPKYDIIISEWMGYFLLYESMLDSII 332

Query: 292 DARNRFLKPDGVVCPNRFTLSLCG 315
            AR   LKP+G++ P+R TLSL G
Sbjct: 333 YARENHLKPNGIILPSRCTLSLLG 356

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194900938|ref|XP_001980012.1| GG20792 [Drosophila erecta] gi|190651715|gb|EDV48970.1| GG20792 [Drosophila erecta]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 137/264 (51%), Gaps = 65/264 (24%)

Query: 63  PACSDLEEKNAE----IDMRNEDIAQMRHLMQDMLNKKEEDEE--GENKTRRH-----DK 111
           P+  +L+++ AE    +   NED+ +MR+  + +L K    EE  G NK+        D 
Sbjct: 148 PSVPELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHGGEESKGSNKSVPRNNVCLDN 207

Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA 171
            YF SY    IH EM+ D VRT +Y++++L N  +   K V+DVG GTGILSIFAA+AGA
Sbjct: 208 EYFKSYSHFGIHHEMLSDKVRTSTYRASLLQNEGVVRGKTVLDVGCGTGILSIFAAKAGA 267

Query: 172 AKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
           A+V  I+ S                                                   
Sbjct: 268 ARVVGIDNS--------------------------------------------------- 276

Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
             DI Y  +DIIRKNK ++ +E+    LED +LP    DIIISEWMGYFLL+E+M+DS+I
Sbjct: 277 --DIVYTAMDIIRKNKVEN-VELIKGRLEDTDLPEAKYDIIISEWMGYFLLYESMLDSII 333

Query: 292 DARNRFLKPDGVVCPNRFTLSLCG 315
            AR   L P+G++ P+R TLSL G
Sbjct: 334 YARENCLNPNGIILPSRCTLSLLG 357

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195570740|ref|XP_002103362.1| GD20372 [Drosophila simulans] gi|194199289|gb|EDX12865.1| GD20372 [Drosophila simulans]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/264 (37%), Positives = 139/264 (52%), Gaps = 65/264 (24%)

Query: 63  PACSDLEEKNAE----IDMRNEDIAQMRHLMQDMLNKKEEDEE--GENKTRRH-----DK 111
           P+  +L+++ AE    +   NED+ +MR+  + +L K   D E  G N++        D 
Sbjct: 108 PSVLELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHADGEPKGSNQSVPRNNVCLDN 167

Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA 171
            YF SY    IH EM+ D VRT +Y++++L N ++   K V+DVG GTGILSIFA++AGA
Sbjct: 168 EYFKSYSHFGIHHEMLSDEVRTSTYRASLLQNEAVVRGKTVLDVGCGTGILSIFASKAGA 227

Query: 172 AKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
           A+V  I+ S                                                   
Sbjct: 228 ARVVGIDNS--------------------------------------------------- 236

Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
             DI Y  +DIIRKNK ++ +E+    LED +LP    DIIISEWMGYFLL+E+M+DS+I
Sbjct: 237 --DIVYTAMDIIRKNKVEN-VELIKGRLEDTDLPEPKYDIIISEWMGYFLLYESMLDSII 293

Query: 292 DARNRFLKPDGVVCPNRFTLSLCG 315
            AR   LKP+G++ P+R TLSL G
Sbjct: 294 YARENHLKPNGIILPSRCTLSLLG 317

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45360587|ref|NP_988966.1| protein arginine methyltransferase 3 [Xenopus (Silurana) tropicalis] gi|38174441|gb|AAH61427.1| heterogeneous nuclear ribonucleoprotein methyltransferase-like 3 (S. cerevisiae) [Xenopus (Silurana) tropicalis]

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/238 (39%), Positives = 124/238 (52%), Gaps = 57/238 (23%)

Query: 80  EDIAQMRHLMQDMLN----KKEEDEEGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTES 135
           ED+ +MR L QD +     +      G       D  YF+SY    IH EM+KDTVRTES
Sbjct: 171 EDLHKMRQLAQDFVMNADVRHSPSSAGAIADLDEDGVYFSSYGHFGIHEEMLKDTVRTES 230

Query: 136 YKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILN 195
           Y+  +  N  +F +K V+DVG GTGILS+FAA+AGA KV  +++S               
Sbjct: 231 YRDFMYQNPHIFKDKTVLDVGCGTGILSMFAAKAGAKKVIGVDQS--------------- 275

Query: 196 NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVY 255
                                                 DI Y+ +DI+R N  +  + + 
Sbjct: 276 --------------------------------------DIIYQAMDIVRLNGLEDTVSLV 297

Query: 256 HKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL 313
              +EDV+LPVE VDIIISEWMGYFLLFE+M+DSVI AR+++L  DG V P+  T+SL
Sbjct: 298 KGRVEDVDLPVEKVDIIISEWMGYFLLFESMLDSVICARDKYLNEDGAVYPDTCTMSL 355

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260825710|ref|XP_002607809.1| hypothetical protein BRAFLDRAFT_117306 [Branchiostoma floridae] gi|229293158|gb|EEN63819.1| hypothetical protein BRAFLDRAFT_117306 [Branchiostoma floridae]

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 105/130 (80%)

Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDII 243
           +RTESY+  I+ N+ LF +K V+DVG GTGILS+FAA+AGA++V A+++S+I Y+ +DI+
Sbjct: 226 VRTESYRDFIMTNQHLFKDKVVLDVGCGTGILSMFAARAGASQVIAVDQSEIIYKAMDIV 285

Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           R+N  D  I++    +ED++LPVE VD+IISEWMGYFLLFE+M+D+V+ AR+++L P G 
Sbjct: 286 RENNLDHVIKLIKGRVEDIQLPVEKVDVIISEWMGYFLLFESMLDTVLYARDQWLAPGGS 345

Query: 304 VCPNRFTLSL 313
           V P+R T+SL
Sbjct: 346 VYPDRCTISL 355

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405962860|gb|EKC28501.1| Protein arginine N-methyltransferase 3 [Crassostrea gigas]

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 103/130 (79%)

Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDII 243
           +RTESY+  + +N +LF +K V+DVG GTGILS+FAA+AGA KV  +++S+I Y+ +DI+
Sbjct: 247 VRTESYRDFMYHNPTLFKDKVVLDVGCGTGILSMFAARAGARKVIGVDQSEIVYQAMDIV 306

Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           R+N  D  + +    +EDVELPV+ VDIIISEWMGYFLLFE+M+DSV+ AR+++L+P+GV
Sbjct: 307 RENGLDDVVTLLKGRIEDVELPVDKVDIIISEWMGYFLLFESMLDSVLYARDKYLQPNGV 366

Query: 304 VCPNRFTLSL 313
           V P+  T+ L
Sbjct: 367 VHPDSCTIVL 376

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|148233213|ref|NP_001090360.1| protein arginine methyltransferase 3 [Xenopus laevis] gi|114108185|gb|AAI23236.1| MGC154481 protein [Xenopus laevis]

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/249 (38%), Positives = 127/249 (51%), Gaps = 77/249 (30%)

Query: 80  EDIAQMRHLMQDMLNKK---------------EEDEEGENKTRRHDKYYFNSYEDAHIHA 124
           ED+ +MR L QD +                  EEDE+G          YF+SY    IH 
Sbjct: 169 EDLHKMRQLAQDFVMNADVRHSSSSAGAIADLEEDEDG---------VYFSSYGHFGIHE 219

Query: 125 EMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184
           +M+KDTVRTESY+  I  N  +F +K V+DVG GTGILS+FAA+AGA +V  +++S    
Sbjct: 220 DMLKDTVRTESYRDFIYQNPHIFKDKTVLDVGCGTGILSMFAAKAGAKRVIGVDQS---- 275

Query: 185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIR 244
                                                            DI Y+ +DI+R
Sbjct: 276 -------------------------------------------------DIIYQAMDIVR 286

Query: 245 KNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
            N  +  I +    +EDV+LPVE VDIIISEWMGYFLLFE+M+DSVI AR+++L  DG V
Sbjct: 287 LNGLEDTISLVKGRIEDVDLPVEKVDIIISEWMGYFLLFESMLDSVICARDKYLSEDGAV 346

Query: 305 CPNRFTLSL 313
            P+  T+SL
Sbjct: 347 YPDACTISL 355

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
FB|FBgn0038306	516	Art3 "Arginine methyltransfera	0.410	0.253	0.5	5.1e-31
ZFIN|ZDB-GENE-041105-1	512	prmt3 "protein arginine methyl	0.407	0.253	0.476	6.9e-30
UNIPROTKB|O60678	531	PRMT3 "Protein arginine N-meth	0.407	0.244	0.5	2e-29
UNIPROTKB|A6QL80	527	PRMT3 "PRMT3 protein" [Bos tau	0.407	0.246	0.484	3.2e-29
UNIPROTKB|F1P8W2	454	PRMT3 "Uncharacterized protein	0.407	0.286	0.484	3.4e-29
TAIR|locus:2051995	366	PRMT1A "protein arginine methy	0.401	0.349	0.453	3.7e-29
UNIPROTKB|F1NYG2	513	PRMT3 "Uncharacterized protein	0.407	0.253	0.484	4.5e-29
POMBASE|SPAC890.07c	340	rmt1 "type I protein arginine	0.407	0.382	0.453	5.6e-29
RGD|620413	528	Prmt3 "protein arginine methyl	0.407	0.246	0.484	9e-29
UNIPROTKB|O70467	528	Prmt3 "Protein arginine N-meth	0.407	0.246	0.484	9e-29

FB|FBgn0038306 Art3 "Arginine methyltransferase 3" [Drosophila melanogaster (taxid:7227)]

 Score = 343 (125.8 bits), Expect = 5.1e-31, P = 5.1e-31
 Identities = 66/132 (50%), Positives = 91/132 (68%)

Query:   184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
             +RT +Y++++L N+++   K V+DVG GTGILSIF           I+ SDI Y  +DII
Sbjct:   226 VRTSTYRASLLQNEAVVRGKTVLDVGCGTGILSIFASKAGAARVVGIDNSDIVYTAMDII 285

Query:   244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
             RKNK ++ +E+    LED +LP    DIIISEWMGYFLL+E+M+DS+I AR   L P+G+
Sbjct:   286 RKNKVEN-VELIKGRLEDTDLPETKYDIIISEWMGYFLLYESMLDSIIYARENHLNPNGI 344

Query:   304 VCPNRFTLSLCG 315
             + P+R TLSL G
Sbjct:   345 ILPSRCTLSLLG 356

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

ZFIN|ZDB-GENE-041105-1 prmt3 "protein arginine methyltransferase 3" [Danio rerio (taxid:7955)]

 Score = 333 (122.3 bits), Expect = 6.9e-30, P = 6.9e-30
 Identities = 62/130 (47%), Positives = 91/130 (70%)

Query:   184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
             +RTESY+  +  N  +F +K V+DVG GTGILS+F           +++S+I Y+ +DI+
Sbjct:   219 VRTESYRDFMYRNMDVFKDKVVLDVGCGTGILSMFAAKAGAKKVVAVDQSEIIYQAMDIV 278

Query:   244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
             R N  +  I +    +E+++LPVE VDIIISEWMGYFLLF +M+DSV+ AR+R+L  DG+
Sbjct:   279 RSNNLEDTITLIKGRIEEIDLPVEKVDIIISEWMGYFLLFGSMLDSVLYARDRYLADDGL 338

Query:   304 VCPNRFTLSL 313
             V P+R ++SL
Sbjct:   339 VFPDRCSISL 348

GO:0006479 "protein methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|O60678 PRMT3 "Protein arginine N-methyltransferase 3" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 2.0e-29, P = 2.0e-29
 Identities = 65/130 (50%), Positives = 89/130 (68%)

Query:   184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
             IRTESY+  I  N  +F +K V+DVG GTGILS+F           +++S+I Y+ +DII
Sbjct:   238 IRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDII 297

Query:   244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
             R NK +  I +    +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A+N++L   G 
Sbjct:   298 RLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGS 357

Query:   304 VCPNRFTLSL 313
             V P+  T+SL
Sbjct:   358 VYPDICTISL 367

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=IEA

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A6QL80 PRMT3 "PRMT3 protein" [Bos taurus (taxid:9913)]

 Score = 328 (120.5 bits), Expect = 3.2e-29, P = 3.2e-29
 Identities = 63/130 (48%), Positives = 89/130 (68%)

Query:   184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
             +RTESY+  I  N  +F +K V+DVG GTGILS+F           +++S+I Y+ +DII
Sbjct:   234 VRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDII 293

Query:   244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
             R NK +  + +    +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A+N++L   G 
Sbjct:   294 RLNKLEDTVTLIKGKIEEVRLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGS 353

Query:   304 VCPNRFTLSL 313
             V P+  T+SL
Sbjct:   354 VYPDICTISL 363

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1P8W2 PRMT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 63/130 (48%), Positives = 89/130 (68%)

Query:   184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
             +RTESY+  I  N  +F +K V+DVG GTGILS+F           +++S+I Y+ +DII
Sbjct:   161 VRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDII 220

Query:   244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
             R NK +  I +    +E+V LPVE VD++ISEWMGYFLLFE+M+DSV+ A+N++L   G 
Sbjct:   221 RLNKLEDTITLIKGKIEEVCLPVEKVDVVISEWMGYFLLFESMLDSVLYAKNKYLAKGGS 280

Query:   304 VCPNRFTLSL 313
             V P+  T+SL
Sbjct:   281 VYPDICTISL 290

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2051995 PRMT1A "protein arginine methyltransferase 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 58/128 (45%), Positives = 84/128 (65%)

Query:   184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
             +RT+SY+  I  NK L  +K V+DVGAGTGILS+F           +E S +A    +I+
Sbjct:    66 VRTKSYQDVIYKNKFLIKDKIVLDVGAGTGILSLFCAKAGAAHVYAVECSQMADTAKEIV 125

Query:   244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
             + N +   I V    +E++ELPV  VD+IISEWMGYFLL+E M+D+V+ ARN++L   G+
Sbjct:   126 KSNGFSDVITVLKGKIEEIELPVPKVDVIISEWMGYFLLYENMLDTVLYARNKWLVDGGI 185

Query:   304 VCPNRFTL 311
             V P++ +L
Sbjct:   186 VLPDKASL 193

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

UNIPROTKB|F1NYG2 PRMT3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 326 (119.8 bits), Expect = 4.5e-29, P = 4.5e-29
 Identities = 63/130 (48%), Positives = 91/130 (70%)

Query:   184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
             +RTESY+  I  N  +F +K V+DVG GTGILS+F           +++S+I Y+ +DII
Sbjct:   220 VRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIGVDQSEIIYQAMDII 279

Query:   244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
             R NK ++ I +    +E+V+LP+E VD+IISEWMGYFLLFE+M+DSVI A++++L   G 
Sbjct:   280 RLNKLENTITLIKGRIEEVDLPLEKVDVIISEWMGYFLLFESMLDSVIYAKDKYLAEGGS 339

Query:   304 VCPNRFTLSL 313
             V P+  T+SL
Sbjct:   340 VYPDICTISL 349

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

POMBASE|SPAC890.07c rmt1 "type I protein arginine N-methyltransferase Rmt1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 59/130 (45%), Positives = 90/130 (69%)

Query:   184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
             +RT SY+ AI+ N  LF +K V+DVG GTGILS+F           ++ S+I ++ + I+
Sbjct:    37 VRTLSYRDAIMQNPHLFRDKIVLDVGCGTGILSMFCARAGAKHVYGVDMSEIIHKAVQIV 96

Query:   244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
               NK   +I +    +E+++LPVE VDII+SEWMGYFLL+E+M+D+V+ AR+R+L PDG+
Sbjct:    97 EVNKLSDRITLIQGKMEEIQLPVEKVDIIVSEWMGYFLLYESMLDTVLVARDRYLAPDGL 156

Query:   304 VCPNRFTLSL 313
             + P+R  + L
Sbjct:   157 LFPDRAQIQL 166

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=IMP

GO:0019919 "peptidyl-arginine methylation, to asymmetrical-dimethyl arginine" evidence=TAS

RGD|620413 Prmt3 "protein arginine methyltransferase 3" [Rattus norvegicus (taxid:10116)]

 Score = 324 (119.1 bits), Expect = 9.0e-29, P = 9.0e-29
 Identities = 63/130 (48%), Positives = 89/130 (68%)

Query:   184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
             +RTESY+  I  N  +F +K V+DVG GTGILS+F           +++S+I Y+ +DII
Sbjct:   235 VRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAMDII 294

Query:   244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
             R NK +  I +    +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A++++L   G 
Sbjct:   295 RLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFESMLDSVLYAKSKYLAKGGS 354

Query:   304 VCPNRFTLSL 313
             V P+  T+SL
Sbjct:   355 VYPDICTISL 364

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA;ISO

GO:0006479 "protein methylation" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=TAS

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=IDA

GO:0019919 "peptidyl-arginine methylation, to asymmetrical-dimethyl arginine" evidence=IDA

GO:0035242 "protein-arginine omega-N asymmetric methyltransferase activity" evidence=IDA

UNIPROTKB|O70467 Prmt3 "Protein arginine N-methyltransferase 3" [Rattus norvegicus (taxid:10116)]

 Score = 324 (119.1 bits), Expect = 9.0e-29, P = 9.0e-29
 Identities = 63/130 (48%), Positives = 89/130 (68%)

Query:   184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
             +RTESY+  I  N  +F +K V+DVG GTGILS+F           +++S+I Y+ +DII
Sbjct:   235 VRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAMDII 294

Query:   244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
             R NK +  I +    +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A++++L   G 
Sbjct:   295 RLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFESMLDSVLYAKSKYLAKGGS 354

Query:   304 VCPNRFTLSL 313
             V P+  T+SL
Sbjct:   355 VYPDICTISL 364

GO:0005829 "cytosol" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q922H1	ANM3_MOUSE	2, ., 1, ., 1, ., -	0.5384	0.4075	0.2443	yes	N/A
O70467	ANM3_RAT	2, ., 1, ., 1, ., -	0.5461	0.4075	0.2462	yes	N/A
Q08A71	ANM6_ARATH	2, ., 1, ., 1, ., -	0.5153	0.4043	0.2965	yes	N/A
O60678	ANM3_HUMAN	2, ., 1, ., 1, ., -	0.5538	0.4075	0.2448	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.125	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	319
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-13
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	3e-10
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-09
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	1e-07
COG4076	252	COG4076, COG4076, Predicted RNA methylase [General	1e-07
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	3e-07
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	5e-07
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	9e-07
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	1e-06
pfam05185	445	pfam05185, PRMT5, PRMT5 arginine-N-methyltransfera	2e-06
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	2e-06
PRK08287	187	PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-meth	4e-06
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	6e-06
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	7e-06
COG0742	187	COG0742, COG0742, N6-adenine-specific methylase [D	8e-06
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	9e-06
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	1e-05
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	1e-05
pfam03602	183	pfam03602, Cons_hypoth95, Conserved hypothetical p	2e-05
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	2e-05
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	2e-05
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	3e-05
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	5e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	6e-05
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	1e-04
COG2520	341	COG2520, COG2520, Predicted methyltransferase [Gen	1e-04
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	2e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-04
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	2e-04
PRK08287	187	PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-meth	2e-04
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	2e-04
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	4e-04
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	5e-04
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	8e-04
COG4076	252	COG4076, COG4076, Predicted RNA methylase [General	0.001
COG0742	187	COG0742, COG0742, N6-adenine-specific methylase [D	0.001
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	0.001
pfam03602	183	pfam03602, Cons_hypoth95, Conserved hypothetical p	0.002
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	0.002
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	0.002
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	0.002
TIGR00095	190	TIGR00095, TIGR00095, RNA methyltransferase, RsmD	0.002
COG2813	300	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans	0.002
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	0.002
PRK14967	223	PRK14967, PRK14967, putative methyltransferase; Pr	0.003
PRK14967	223	PRK14967, PRK14967, putative methyltransferase; Pr	0.003
TIGR01444	144	TIGR01444, fkbM_fam, methyltransferase, FkbM famil	0.003
TIGR01444	144	TIGR01444, fkbM_fam, methyltransferase, FkbM famil	0.004

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYH-KLLEDVE 263
           V+D+G GTG L++  A    A+V  ++ S +A E             +EV      E   
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61

Query: 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
              ES D+IIS+   + L+ +  +   ++   R LKP GV+
Sbjct: 62  EADESFDVIISDPPLHHLVED--LARFLEEARRLLKPGGVL 100

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 11/99 (11%)

Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKLLEDVE 263
           V+DVG G+GIL+I A + GA KV  ++   +A     +    N  ++Q+EVY  L  D  
Sbjct: 164 VLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVY--LPGD-- 219

Query: 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG 302
           LP    D++++      +L + +I+   D     +KP G
Sbjct: 220 LPEGKADVVVAN-----ILADPLIELAPDI-YALVKPGG 252

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 13/107 (12%)

Query: 202 NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKN---KYDSQIEVYHK 257
              V+D+G GTG L+I  A+    A+V  ++ S    E +++ R+N       +I     
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSP---EMLELARENAKLALGPRITFVQG 58

Query: 258 LLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
              D    +E  D +     G       ++D++       LKP G +
Sbjct: 59  DAPDALDLLEGFDAVFI--GGGGGDLLELLDALASL----LKPGGRL 99

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 204 HVIDVGAGTGILSIFAAQAGA-AKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKLLED 261
            V+D GAG+G   + AA+AG  A+V  +E    A       +       ++ V      +
Sbjct: 3   RVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDARE 62

Query: 262 V-ELPVESVDIII-----SEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
           + ELP  S D+++         G       + D  + A  R LKP GV+
Sbjct: 63  LLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVL 111

This family contains methyltransferase domains. Length = 117

>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only]

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVEL 264
             D+GAG+GILS+ AA A A +V AIEK        +       D   EV      D + 
Sbjct: 36  FADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD- 93

Query: 265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306
             E+ D++I E +   L+ E  +  VI+A   FL+ D  + P
Sbjct: 94  -FENADVVICEMLDTALIEEKQV-PVINAVLEFLRYDPTIIP 133

Length = 252

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVY 255
           K +   K V+DVG G+GIL+I AA+ GA KV A++    A E   +    N  +  + + 
Sbjct: 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLP 174

Query: 256 HKLLEDVELPVESVDIII 273
              L+         D+I+
Sbjct: 175 QGDLK--------ADVIV 184

Length = 250

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHK 257
           L   K V+DVG G+GIL+I AA+ GA KV  ++    A E   +  R N  +  ++    
Sbjct: 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219

Query: 258 LLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
           LL +V       D+I++      +L E  +  +     R LKP G +
Sbjct: 220 LLLEV-PENGPFDVIVAN-----ILAEV-LVELAPDIKRLLKPGGRL 259

Length = 300

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 206 IDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265
           +DVG GTG+L+   A+ G A+V  +   D++ E + + RK       +      ED+  P
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGV---DLSPEMLALARKRA---PRKFVVGDAEDLPFP 54

Query: 266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
            ES D+++S  +   L      +  +    R LKP G + 
Sbjct: 55  DESFDVVVSSLV---LHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)

Query: 178 EKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAY 237
           E+  TP    +Y   +   +     K V+D+GAGTGIL+I AA  GA++V A+   DI  
Sbjct: 22  EQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAV---DIDP 78

Query: 238 ETIDIIRKN--KYDSQIEVYHKLLEDVELPVESV 269
           E ++I R N  +    +E     + D     ++V
Sbjct: 79  EALEIARANAEELLGDVEFVVADVSDFRGKFDTV 112

Length = 198

>gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 22/145 (15%)

Query: 183 PIRTESYKSAI-------LNNKSLFNNKHVIDV-GAGTGIL---SIFAAQ-AG-AAKVFA 229
           P++ + Y+ AI       +  K   ++  VI V GAG G L   ++ AA+  G   K++A
Sbjct: 160 PVKYDQYERAIRKALLDRVPEKKKTSSTLVILVVGAGRGPLVDRALKAAEETGRKVKIYA 219

Query: 230 IEKSDIAYETID-IIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL---LFET 285
           +EK+  A  T+   +   ++  ++ +    + + + P E  DI++SE +G F    L   
Sbjct: 220 VEKNPNAVVTLQKRVNFEEWGDKVTIISSDMREWKGP-EKADILVSELLGSFGDNELSPE 278

Query: 286 MIDSVIDARNRFLKPDGVVCPNRFT 310
            +D       RFLKPDG+  P  +T
Sbjct: 279 CLDGA----QRFLKPDGISIPQSYT 299

The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes. Length = 445

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 13/139 (9%)

Query: 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI 242
           P+R   Y   +   +       V+DVG G GILS   A+ G A V  I   D + + I++
Sbjct: 42  PLR-LDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGI---DASEKPIEV 96

Query: 243 IRKNKYDS--QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKP 300
            + +  +S   I+     +ED+       D++    +   L      +S + A  + +KP
Sbjct: 97  AKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV---LEHVPDPESFLRACAKLVKP 153

Query: 301 DGVV---CPNRFTLSLCGA 316
            G++     NR   +   A
Sbjct: 154 GGILFLSTINRTLKAYLLA 172

Length = 243

>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase; Validated

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSDIAYETID 241
           P+  E  ++  L+   L   KH+IDVGAGTG +SI AA Q  + +V AIE++  A   + 
Sbjct: 13  PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDA---LR 69

Query: 242 IIRKNK 247
           +I++N+
Sbjct: 70  LIKENR 75

Length = 187

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 46.3 bits (111), Expect = 6e-06
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
           +   K V+DVG G+GIL+I AA+ GA KV A+
Sbjct: 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAV 148

Length = 250

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDSQIEVYHKLLEDV 262
           ++D+G GTG +    A+AG + V  +   DI+ E +++ ++       ++        D+
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGV---DISKEALELAKERLRDKGPKVRFVVADARDL 57

Query: 263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG 302
                S D++I   +    L    + +++    R L+P G
Sbjct: 58  PFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 180 SGTPIR--TESYKSAILN--NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDI 235
            G   R  T+  + A+ N           V+D+ AG+G L + A   GAA+V  +EK   
Sbjct: 18  DGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRK 77

Query: 236 AYETIDIIRKN 246
           A +   I+++N
Sbjct: 78  AVK---ILKEN 85

Length = 187

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 14/115 (12%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYETIDIIRKNKYD---SQIEVYH 256
               + D+GAGTG ++I  A AG + +V AIE+ +   E +++I +N        +EV  
Sbjct: 34  PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE---EALELIERNAARFGVDNLEVVE 90

Query: 257 KLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311
               +    + S D I       F+     I+ +++A    LKP G +  N  TL
Sbjct: 91  GDAPEALPDLPSPDAI-------FIGGGGNIEEILEAAWERLKPGGRLVANAITL 138

Length = 187

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 24/125 (19%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNK-YDSQIEVYH-K 257
               V++VG G+GI++I AA+ G  KV  ++ +  A E      + N   ++ +EV    
Sbjct: 23  KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD 81

Query: 258 LLEDVE-------------LPVESVDIIISEWMGYFLL-----FETMIDSVIDARNRFLK 299
           L E                LP E  +    +W+ Y L       E  ID  +D   R+LK
Sbjct: 82  LFEPFRGDKFDVILFNPPYLPTEEEE-EWDDWLNYALSGGKDGREV-IDRFLDEVGRYLK 139

Query: 300 PDGVV 304
           P G +
Sbjct: 140 PGGRI 144

Length = 188

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 203 KHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYETIDIIRKN----KYDSQIEVYHK 257
           K ++D+G G+G ++I  A+ G  A+V A    DI+ + + + R+N         + V   
Sbjct: 112 KRILDLGTGSGAIAIALAKEGPDAEVIA---VDISPDALALARENAERNGLVRVLVVQSD 168

Query: 258 LLEDVELPVESVDIIIS 274
           L E +       D+I+S
Sbjct: 169 LFEPLR---GKFDLIVS 182

Length = 280

>gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 12/59 (20%)

Query: 197 KSLFN---------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN 246
           ++LFN            V+D+ AG+G L + A   GAA V  +EK   A      +++N
Sbjct: 30  EALFNILAPYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVEKDKKAVA---TLKEN 85

Length = 183

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 192 AILNNKSLFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKN---K 247
             L    L     V+D+G G+G +++  A +   A+V A++ S  A     + R+N    
Sbjct: 99  WALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALA---VARRNAKHG 155

Query: 248 YDSQIEVYHK-LLEDVELPVESVDIIIS 274
             +++E       E   LP    D+I+S
Sbjct: 156 LGARVEFLQGDWFE--PLPGGRFDLIVS 181

Length = 275

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 11/76 (14%)

Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQI----EVYHKL 258
           K+VIDVG G+GILSI A + GAAKV  I   DI    ++  RKN   +Q+    +V    
Sbjct: 161 KNVIDVGCGSGILSIAALKLGAAKVVGI---DIDPLAVESARKNAELNQVSDRLQVKLIY 217

Query: 259 LED-VELPVESVDIII 273
           LE  +E      D+I+
Sbjct: 218 LEQPIEGK---ADVIV 230

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 192 AILNNKSLFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDS 250
           A+L  K +F    V+D+G GTG L+     +   A+  A    DI+   +    K K   
Sbjct: 25  ALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIAN---DISAGML-AQAKTKLSE 80

Query: 251 QIEVYHKLLEDVELPVESVDIIIS----EWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
            ++      E + L   S D+I+S    +W              +    R LKP G++ 
Sbjct: 81  NVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL-------SQALSELARVLKPGGLLA 132

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 202 NKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSDIAYETIDI-IRKNKYDSQIEVYHKLL 259
              ++D+GAG G L +  AQ    AK+  +E  + A E     +  N  + +I+V     
Sbjct: 45  KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE--- 101

Query: 260 EDVE-----LPVESVDIIIS 274
            D++     L   S D+II 
Sbjct: 102 ADIKEFLKALVFASFDLIIC 121

Length = 248

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 14/112 (12%)

Query: 202 NKHVIDVGAGTGILSIFAAQ--AGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLL 259
              V+D+G GTG L+   A+     A+V  I+ S+   E I+  ++N      E    + 
Sbjct: 4   GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISE---EAIEKAKENAKKLGYENVEFIQ 60

Query: 260 EDVE------LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
            D+E      L   S D++IS      L      D V++   R LKP GV+ 
Sbjct: 61  GDIEELPQLQLEDNSFDVVISN---EVLNHLPDPDKVLEEIIRVLKPGGVLI 109

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
           L   K V+DVG G+GIL+I AA+ GA KV  +
Sbjct: 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGV 191

Length = 300

>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only]

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETI-DIIRKNKYDSQIEVYHKLLE 260
            + V+D+ AG G  SI  A+ G  KV+AI+ +  A E + + IR NK + ++E       
Sbjct: 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAR 248

Query: 261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
           +V   +   D II   MG            +      LK  G++
Sbjct: 249 EVAPELGVADRII---MGLP----KSAHEFLPLALELLKDGGII 285

Length = 341

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 152 VIDVGAGTGILSIFAAQAGAAKVFAI 177
           V+DVG G+GIL+I A + GA KV  +
Sbjct: 164 VLDVGCGSGILAIAALKLGAKKVVGV 189

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 9/98 (9%)

Query: 149 NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVID 207
              V+D+G GTG L+I  A+    A+V  ++ S   +        +    +       I 
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEML-------ELARENAKLALGPRIT 54

Query: 208 VGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK 245
              G           G   VF         E +D +  
Sbjct: 55  FVQGD-APDALDLLEGFDAVFIGGGGGDLLELLDALAS 91

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 178
                  K V+D+GAGTGIL+I AA  GA++V A++
Sbjct: 40  LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVD 75

Length = 198

>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase; Validated

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 6/55 (10%)

Query: 126 MIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEK 179
           M K+ VR  +     L+   L   KH+IDVGAGTG +SI AA Q  + +V AIE+
Sbjct: 14  MTKEEVRALA-----LSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIER 63

Length = 187

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 13/107 (12%)

Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETI-DIIRKNKYDSQIEVYHKLLED 261
             ++D+G G G L+I+AA+     V  +  S+         I     +  +EV  +   D
Sbjct: 74  MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133

Query: 262 VELPVESVDIIIS----EWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
            E   E  D I+S    E +G         D         LKP G +
Sbjct: 134 FE---EPFDRIVSVGMFEHVGK-----ENYDDFFKKVYALLKPGGRM 172

Length = 283

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 20/111 (18%)

Query: 202 NKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSDIAYETIDIIRKN--KYD-SQIEVYHK 257
              + D+GAGTG ++I AA      +V+AIE++    E +D+I +N  ++  S I +   
Sbjct: 20  GDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNP---EALDLIERNLRRFGVSNIVI--- 73

Query: 258 LLEDVELPVE----SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
           +  D     E      D +     G       ++  +++A  R L+P G +
Sbjct: 74  VEGDAPEAPEDLLPDPDAVFVGGSG------GLLQEILEAVERRLRPGGRI 118

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT 186
               + D+GAGTG ++I  A AG + +V AIE+    +  
Sbjct: 34  PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALEL 73

Length = 187

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 19/29 (65%), Positives = 23/29 (79%)

Query: 150 KHVIDVGAGTGILSIFAAQAGAAKVFAIE 178
           K+VIDVG G+GILSI A + GAAKV  I+
Sbjct: 161 KNVIDVGCGSGILSIAALKLGAAKVVGID 189

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only]

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%)

Query: 123 HAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
           H ++++D  R   + SAI    +        D+GAG+GILS+ AA A A +V AIEK
Sbjct: 11  HLDLLRDVERLAVFTSAI----AEVAEDTFADLGAGSGILSVVAAHA-AERVIAIEK 62

Length = 252

>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 8/44 (18%)

Query: 145 SLFN--------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
           +LFN           V+D+ AG+G L + A   GAA+V  +EK 
Sbjct: 32  ALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKD 75

Length = 187

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDS 250
           I ++      K V+D+GAG+G+++I AA+AGAA+V A    DI       IR N      
Sbjct: 71  IDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAA---DIDPWLEQAIRLNAAANGV 127

Query: 251 QIEVYHKLLEDVELPVESVDIII 273
            I   H    D+     + D+++
Sbjct: 128 SILFTH---ADLIGSPPAFDLLL 147

Length = 218

>gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 9/45 (20%)

Query: 145 SLFN---------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
           +LFN            V+D+ AG+G L + A   GAA V  +EK 
Sbjct: 31  ALFNILAPYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVEKD 75

Length = 183

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 11/104 (10%)

Query: 206 IDVGAGTGILSIFAAQAGA-AKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKL----LE 260
           +D+G GTG L     +A    +   +   DI+   ++   +      +    ++    L+
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGV---DISPAALEAAAERLAALGLLDAVRVRLDVLD 57

Query: 261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
            ++L   S D+++       L       +V+    R LKP GV+
Sbjct: 58  AIDLDPGSFDVVV---ASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
              V+D+G G G+L    A+        +   DI    ++  R N   + +E       D
Sbjct: 32  GGKVLDLGCGYGVLGAALAKRSP--DLEVTMVDINARALESARANLAANGLENGEVFWSD 89

Query: 262 V--ELPVESVDIIIS 274
           +   +     D+IIS
Sbjct: 90  LYSAVEPGKFDLIIS 104

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 204 HVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV 262
            V+DV  GTG +++  A   G  +V  +   DI+   +++ R+      ++    ++ D 
Sbjct: 54  KVLDVACGTGDMALLLAKSVGTGEVVGL---DISESMLEVAREKLKKKGVQNVEFVVGDA 110

Query: 263 E-LPVE--SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           E LP    S D +    + + L   T ID  +    R LKP G + 
Sbjct: 111 ENLPFPDNSFDAVT---ISFGLRNVTDIDKALKEMYRVLKPGGRLL 153

Length = 238

>gnl|CDD|188022 TIGR00095, TIGR00095, RNA methyltransferase, RsmD family

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 198 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETI 240
           SLFN         H +D+ AG+G L + A   GAA    +E+     +T+
Sbjct: 40  SLFNILRPDIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDRKVAQTL 89

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases [Protein synthesis, tRNA and rRNA base modification]. Length = 190

>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 202 NKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
              V+D+G G G+L +  A ++  AK   +   D+    ++  RKN   + +E       
Sbjct: 159 GGKVLDLGCGYGVLGLVLAKKSPQAK---LTLVDVNARAVESARKNLAANGVENTEVWAS 215

Query: 261 DVELPVE-SVDIIIS 274
           ++  PVE   D+IIS
Sbjct: 216 NLYEPVEGKFDLIIS 230

Length = 300

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 22/102 (21%)

Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVEL 264
           V+D+G GTGIL     + G   V  ++ S  A     ++  + +D           D  +
Sbjct: 26  VLDIGCGTGILLRLLRERG-FDVTGVDPSPAA-----VLIFSLFD---------APDPAV 70

Query: 265 PVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVV 304
                D+I +     F + E + D  +++      LKP GV+
Sbjct: 71  LAGKYDLITA-----FEVLEHLPDPPALLQQLRELLKPGGVL 107

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETI 240
           V+D+  G+G L++ AA AGA  V A++ S  A  + 
Sbjct: 40  VLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSA 75

Length = 223

>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 152 VIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
           V+D+  G+G L++ AA AGA  V A++ S
Sbjct: 40  VLDLCTGSGALAVAAAAAGAGSVTAVDIS 68

Length = 223

>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 204 HVIDVGAGTGILSIFAAQAGA-AKVFAIEKSDIAYETIDIIRKNKY 248
            VIDVGA  G  S++ A+ GA  +V A E    AYE   I+ +N  
Sbjct: 1   VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYE---ILEENVK 43

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144

>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 151 HVIDVGAGTGILSIFAAQAGA-AKVFAIE 178
            VIDVGA  G  S++ A+ GA  +V A E
Sbjct: 1   VVIDVGANIGDFSLYFARKGAEGRVIAFE 29

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
KOG1499|consensus	346		99.97
KOG1500|consensus	517		99.93
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.78
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.77
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.74
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.73
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.69
PLN02244	340	tocopherol O-methyltransferase	99.68
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.67
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.67
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.67
PRK11207	197	tellurite resistance protein TehB; Provisional	99.66
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.65
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.64
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.64
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.64
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.64
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.63
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.63
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.62
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.6
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.6
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.6
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.6
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.59
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.58
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.58
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.57
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.57
KOG1540|consensus	296		99.56
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.56
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.56
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.55
PRK12335	287	tellurite resistance protein TehB; Provisional	99.55
KOG1270|consensus	282		99.54
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.54
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.54
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.54
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.53
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.53
COG4123	248	Predicted O-methyltransferase [General function pr	99.52
PLN02336	475	phosphoethanolamine N-methyltransferase	99.52
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.52
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.52
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.52
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.52
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.52
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.51
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.51
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.5
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.5
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.5
PRK08317	241	hypothetical protein; Provisional	99.5
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.5
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.49
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.48
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.48
PRK14967	223	putative methyltransferase; Provisional	99.47
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.47
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.46
PRK07402	196	precorrin-6B methylase; Provisional	99.46
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.46
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.45
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.45
PRK06922	677	hypothetical protein; Provisional	99.45
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.45
PLN03075	296	nicotianamine synthase; Provisional	99.45
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.45
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.45
PLN02490	340	MPBQ/MSBQ methyltransferase	99.44
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.44
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.43
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.43
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.43
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.43
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.43
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.43
PLN02336	475	phosphoethanolamine N-methyltransferase	99.43
KOG1271|consensus	227		99.43
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.43
PRK05785	226	hypothetical protein; Provisional	99.42
KOG4300|consensus	252		99.41
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.41
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.41
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.4
PRK14968	188	putative methyltransferase; Provisional	99.39
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.39
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.38
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.38
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.38
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.37
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.37
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.37
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.37
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.37
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.36
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.36
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.35
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.35
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.35
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.34
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.34
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.34
COG2890	280	HemK Methylase of polypeptide chain release factor	99.33
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.33
PRK04266	226	fibrillarin; Provisional	99.32
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.32
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.32
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.32
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.31
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.31
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.3
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.3
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.28
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.28
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.27
TIGR03438	301	probable methyltransferase. This model represents	99.25
PRK06202	232	hypothetical protein; Provisional	99.25
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.24
KOG2904|consensus	328		99.23
PHA03412	241	putative methyltransferase; Provisional	99.22
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.22
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.22
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.22
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.21
KOG1501|consensus	636		99.21
TIGR00438	188	rrmJ cell division protein FtsJ.	99.2
PRK04457	262	spermidine synthase; Provisional	99.19
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.19
PRK00811	283	spermidine synthase; Provisional	99.19
PHA03411	279	putative methyltransferase; Provisional	99.17
KOG2899|consensus	288		99.17
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.16
PTZ00146	293	fibrillarin; Provisional	99.16
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.16
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.15
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.15
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.14
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.12
PLN02672	1082	methionine S-methyltransferase	99.11
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.1
PLN02476	278	O-methyltransferase	99.09
COG4076	252	Predicted RNA methylase [General function predicti	99.08
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.07
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.07
KOG1975|consensus	389		99.07
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.06
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.05
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.05
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.05
KOG1541|consensus	270		99.05
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.04
KOG3010|consensus	261		99.04
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.04
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.02
COG4122	219	Predicted O-methyltransferase [General function pr	99.02
PLN02366	308	spermidine synthase	99.01
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.01
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.0
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.97
PRK03612	521	spermidine synthase; Provisional	98.97
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.96
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.95
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.93
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.93
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.92
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.92
PRK01581	374	speE spermidine synthase; Validated	98.92
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.9
COG2521	287	Predicted archaeal methyltransferase [General func	98.89
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.87
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.85
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.84
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.82
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.82
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.81
COG2520	341	Predicted methyltransferase [General function pred	98.8
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.8
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.79
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.78
KOG2361|consensus	264		98.7
KOG3191|consensus	209		98.69
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.69
KOG0820|consensus	315		98.68
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.68
KOG3420|consensus	185		98.67
KOG2940|consensus	325		98.64
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.62
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.62
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.61
PLN02823	336	spermine synthase	98.6
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.59
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.58
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.56
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.56
KOG1661|consensus	237		98.56
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.55
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.54
KOG3045|consensus	325		98.52
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.51
KOG1663|consensus	237		98.51
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.5
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.5
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.5
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.5
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.5
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.48
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.46
PRK04148	134	hypothetical protein; Provisional	98.44
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.44
PRK00536	262	speE spermidine synthase; Provisional	98.43
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.41
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.36
KOG2915|consensus	314		98.35
COG3897	218	Predicted methyltransferase [General function pred	98.33
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.3
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.29
KOG0822|consensus	649		98.26
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.25
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.24
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.23
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.22
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.22
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.22
KOG2187|consensus	534		98.21
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.2
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.19
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.15
KOG2730|consensus	263		98.15
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.15
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.13
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.08
KOG1331|consensus	293		98.06
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.05
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.02
KOG1122|consensus	460		98.02
KOG1269|consensus	364		98.02
KOG3178|consensus	342		98.0
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.98
KOG1709|consensus	271		97.95
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.95
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.95
PRK10742	250	putative methyltransferase; Provisional	97.87
PF13679	141	Methyltransf_32: Methyltransferase domain	97.87
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.83
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.82
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.81
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.8
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.8
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.76
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.75
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.74
PTZ00357	1072	methyltransferase; Provisional	97.67
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.65
KOG4058|consensus	199		97.51
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.51
KOG3201|consensus	201		97.47
KOG4589|consensus	232		97.45
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.45
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.44
KOG2352|consensus	482		97.39
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.36
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.32
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.31
KOG1499|consensus	346		97.28
KOG2899|consensus	288		97.22
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.2
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.18
KOG2671|consensus	421		97.17
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.16
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.12
KOG2798|consensus	369		97.08
COG4798	238	Predicted methyltransferase [General function pred	97.05
KOG1500|consensus	517		97.01
KOG2198|consensus	375		96.93
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	96.92
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	96.91
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.9
PHA01634	156	hypothetical protein	96.85
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.85
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	96.85
KOG1270|consensus	282		96.81
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.76
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.76
PRK07402	196	precorrin-6B methylase; Provisional	96.74
KOG3987|consensus	288		96.73
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.71
COG0286	489	HsdM Type I restriction-modification system methyl	96.7
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.65
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.61
KOG1227|consensus	351		96.56
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.55
COG3897	218	Predicted methyltransferase [General function pred	96.55
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	96.53
KOG3420|consensus	185		96.52
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	96.52
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	96.49
KOG1596|consensus	317		96.44
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.4
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.34
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.32
KOG3115|consensus	249		96.31
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	96.28
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.26
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.24
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.23
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	96.21
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.11
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.06
KOG1253|consensus	525		96.04
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	95.99
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	95.97
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	95.97
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.95
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	95.93
KOG1099|consensus	294		95.89
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.85
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.83
PRK14967	223	putative methyltransferase; Provisional	95.81
PLN02668	386	indole-3-acetate carboxyl methyltransferase	95.79
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.77
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	95.74
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	95.69
KOG2187|consensus	534		95.69
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	95.68
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.66
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	95.65
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	95.62
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	95.62
KOG1562|consensus	337		95.59
PRK04266	226	fibrillarin; Provisional	95.58
KOG2793|consensus	248		95.53
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.53
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	95.52
KOG2920|consensus	282		95.51
PRK11207	197	tellurite resistance protein TehB; Provisional	95.49
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	95.4
PRK04148	134	hypothetical protein; Provisional	95.38
TIGR00438	188	rrmJ cell division protein FtsJ.	95.37
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	95.35
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.3
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	95.25
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	95.24
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.24
PLN02233	261	ubiquinone biosynthesis methyltransferase	95.21
PRK06202	232	hypothetical protein; Provisional	95.2
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	95.2
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	95.14
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	95.1
PRK11524	284	putative methyltransferase; Provisional	95.1
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.05
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	94.98
COG4123	248	Predicted O-methyltransferase [General function pr	94.95
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	94.86
PRK12335	287	tellurite resistance protein TehB; Provisional	94.84
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	94.83
PRK08317	241	hypothetical protein; Provisional	94.77
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	94.77
COG2890	280	HemK Methylase of polypeptide chain release factor	94.72
PLN02244	340	tocopherol O-methyltransferase	94.72
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	94.69
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	94.68
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	94.68
PRK05785	226	hypothetical protein; Provisional	94.66
PRK13699	227	putative methylase; Provisional	94.63
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	94.52
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	94.51
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	94.39
PRK10258	251	biotin biosynthesis protein BioC; Provisional	94.34
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	94.33
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.32
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	94.29
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	94.29
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	94.25
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	94.24
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	94.15
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	94.14
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.1
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	94.07
PLN02585	315	magnesium protoporphyrin IX methyltransferase	94.07
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	94.01
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	94.01
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	93.99
COG1568	354	Predicted methyltransferases [General function pre	93.97
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	93.93
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	93.93
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	93.91
COG4301	321	Uncharacterized conserved protein [Function unknow	93.9
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	93.89
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	93.88
KOG1501|consensus	636		93.84
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	93.66
PRK14968	188	putative methyltransferase; Provisional	93.64
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	93.57
PTZ00146	293	fibrillarin; Provisional	93.55
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	93.53
PRK11524	284	putative methyltransferase; Provisional	93.5
PRK06922	677	hypothetical protein; Provisional	93.49
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	93.44
PHA03411	279	putative methyltransferase; Provisional	93.44
KOG2904|consensus	328		93.41
PHA03412	241	putative methyltransferase; Provisional	93.4
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	93.4
TIGR00740	239	methyltransferase, putative. A simple BLAST search	93.39
COG4076	252	Predicted RNA methylase [General function predicti	93.32
PHA01634	156	hypothetical protein	93.31
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	93.3
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	93.17
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	93.16
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	93.15
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.12
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	93.06
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	93.06
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	93.03
PRK13699	227	putative methylase; Provisional	93.03
PF13679	141	Methyltransf_32: Methyltransferase domain	93.02
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	92.89
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	92.78
PLN02672	1082	methionine S-methyltransferase	92.7
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	92.6
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	92.45
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	92.45
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	92.34
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	92.3
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	92.17
KOG0024|consensus	354		92.07
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	92.04
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	92.02
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	92.0
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	91.93
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	91.79
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.6
KOG2651|consensus	476		91.6
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	91.59
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	91.59
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	91.49
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	91.43
COG2265	432	TrmA SAM-dependent methyltransferases related to t	91.42
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	91.38
PRK04457	262	spermidine synthase; Provisional	91.2
PLN02490	340	MPBQ/MSBQ methyltransferase	91.16
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	91.06
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	91.01
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	90.9
PRK13255	218	thiopurine S-methyltransferase; Reviewed	90.88
PRK10901	427	16S rRNA methyltransferase B; Provisional	90.87
TIGR03438	301	probable methyltransferase. This model represents	90.83
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	90.75
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	90.75
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	90.5
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	90.37
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	90.34
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	90.3
COG0742	187	N6-adenine-specific methylase [DNA replication, re	90.3
COG2933	358	Predicted SAM-dependent methyltransferase [General	90.11
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	89.94
KOG1271|consensus	227		89.9
PF03269	177	DUF268: Caenorhabditis protein of unknown function	89.8
KOG2078|consensus	495		89.8
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	89.68
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	89.58
PRK14902	444	16S rRNA methyltransferase B; Provisional	89.36
PRK10458	467	DNA cytosine methylase; Provisional	89.23
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	89.18
COG1565	370	Uncharacterized conserved protein [Function unknow	88.97
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	88.76
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	88.73
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	88.71
KOG3924|consensus	419		88.7
KOG2915|consensus	314		88.62
PRK00811	283	spermidine synthase; Provisional	88.61
KOG2912|consensus	419		88.57
KOG1541|consensus	270		88.49
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	88.46
PRK11677	134	hypothetical protein; Provisional	88.37
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	88.2
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	88.13
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	88.03
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	87.91
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	87.68
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	87.67
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	87.54
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	87.47
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	87.37
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	87.36
KOG0821|consensus	326		87.23
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	87.19
KOG0820|consensus	315		87.04
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	86.94
PRK14904	445	16S rRNA methyltransferase B; Provisional	86.89
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	86.84
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	86.34
PRK08324	681	short chain dehydrogenase; Validated	86.31
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	86.25
KOG2920|consensus	282		85.81
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	85.8
PRK14903	431	16S rRNA methyltransferase B; Provisional	85.42
PRK14901	434	16S rRNA methyltransferase B; Provisional	85.16
COG4976	287	Predicted methyltransferase (contains TPR repeat)	84.92
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	84.77

>KOG1499|consensus

Probab=99.97  E-value=3e-31  Score=242.61  Aligned_cols=159  Identities=53%  Similarity=0.878  Sum_probs=151.2

Q ss_pred             CCcchhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         107 RRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       107 ~~~~~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ...+++||.+|.++++|+.|++|.+|+.+|+.++..|..+|.+                                     
T Consensus        19 ~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~d-------------------------------------   61 (346)
T KOG1499|consen   19 MTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKD-------------------------------------   61 (346)
T ss_pred             cchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCC-------------------------------------
Confidence            3478999999999999999999999999999999999999999                                     


Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPV  266 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~  266 (319)
                                      +.|||+|||||.++++++++|+.+|+|+|.|.+++.|.+.+..|++.+.++++++.++++.+|.
T Consensus        62 ----------------K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~  125 (346)
T KOG1499|consen   62 ----------------KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPV  125 (346)
T ss_pred             ----------------CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCc
Confidence                            6788888888888888889889999999999988999999999999989999999999999998


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                      +++|+|+|+||+|++.+++++..+|.+..++|+|||.++|+.++++++|+++
T Consensus       126 eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d  177 (346)
T KOG1499|consen  126 EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIED  177 (346)
T ss_pred             cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccC
Confidence            9999999999999999999999999999999999999999999999999875

>KOG1500|consensus

Probab=99.93  E-value=1.8e-25  Score=201.80  Aligned_cols=157  Identities=45%  Similarity=0.676  Sum_probs=146.2

Q ss_pred             CcchhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHH
Q psy8709         108 RHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTE  187 (319)
Q Consensus       108 ~~~~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~  187 (319)
                      ...++||+.|++....+.|+.|.+|+..|.+++..|-..|.+                                      
T Consensus       137 sSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~--------------------------------------  178 (517)
T KOG1500|consen  137 SSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQD--------------------------------------  178 (517)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCC--------------------------------------
Confidence            457899999999999999999999999999999999998888                                      


Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                                     +.|||+|||+|+++++++++|+++|++++.|.|.+.|++.++.|.+.++|+++.|.++++.+| +
T Consensus       179 ---------------kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-E  242 (517)
T KOG1500|consen  179 ---------------KIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-E  242 (517)
T ss_pred             ---------------cEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-h
Confidence                           677777888888888888888899999999999999999999999999999999999999999 8


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeeccccC
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYAE  319 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~e  319 (319)
                      +.|+||+++|++.+..+.+++..+.+. ++|||.|.++|+...++++|+++|
T Consensus       243 k~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE  293 (517)
T KOG1500|consen  243 KVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDE  293 (517)
T ss_pred             hccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchH
Confidence            999999999999999999999998877 999999999999999999999876

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.78  E-value=1.4e-18  Score=154.51  Aligned_cols=117  Identities=21%  Similarity=0.329  Sum_probs=103.3

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ..|++.+...+...+|.+|||+|||||.++..+++. |.++|+|+|+|+ |++.+++++...+... ++|+.+|++++|+
T Consensus        37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf  115 (238)
T COG2226          37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF  115 (238)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC
Confidence            567777777777778999999999999999999994 677999999999 9999999999888754 9999999999999


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ++++||+|.+...++.+   .+++++|++++|+|||||++++-
T Consensus       116 ~D~sFD~vt~~fglrnv---~d~~~aL~E~~RVlKpgG~~~vl  155 (238)
T COG2226         116 PDNSFDAVTISFGLRNV---TDIDKALKEMYRVLKPGGRLLVL  155 (238)
T ss_pred             CCCccCEEEeeehhhcC---CCHHHHHHHHHHhhcCCeEEEEE
Confidence            99999999976655444   78999999999999999988743

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.77  E-value=4.2e-18  Score=134.53  Aligned_cols=108  Identities=26%  Similarity=0.295  Sum_probs=91.3

Q ss_pred             CCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc-cccccCCCceeEEEecc-
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL-EDVELPVESVDIIISEW-  276 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~-~~~~~~~~~fD~Iis~~-  276 (319)
                      |+.+|||+|||+|.++..+++ .+..+|+|+|+|+ +++.+++++...+..++++++++|+ ...... ++||+|++.. 
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~   79 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF   79 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence            468999999999999999999 3566999999999 9999999997778889999999999 333333 6799999988 


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ..+++...+....+++.+.+.|+|||+++++.|
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            445444446788999999999999999999875

...

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.74  E-value=1.7e-17  Score=160.99  Aligned_cols=116  Identities=43%  Similarity=0.662  Sum_probs=95.1

Q ss_pred             CCcceeeccCCCchHHHHHHHcC-----CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAG-----AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS  274 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g-----~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis  274 (319)
                      ++..|||+|||+|.++.++++++     ..+|++||.++ +....++.++.+++.++|+++++|++++..| +++|+|||
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS  264 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS  264 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence            34789999999999998888865     57999999999 6655666778899989999999999999988 69999999


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                      +++|.+..+| ...+.|..+.|+|||||+++|+..+.|++|+++
T Consensus       265 ElLGsfg~nE-l~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss  307 (448)
T PF05185_consen  265 ELLGSFGDNE-LSPECLDAADRFLKPDGIMIPSSYTSYLAPISS  307 (448)
T ss_dssp             ---BTTBTTT-SHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-
T ss_pred             eccCCccccc-cCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeC
Confidence            9999887665 556789999999999999999999999999975

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.73  E-value=9.5e-18  Score=149.97  Aligned_cols=115  Identities=21%  Similarity=0.284  Sum_probs=83.8

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      .|++.+.+.....++.+|||+|||||.++..+++. + ..+|+|+|+|+ |++.|++++...+. .+++++++|++++++
T Consensus        34 ~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~~da~~lp~  112 (233)
T PF01209_consen   34 RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQGDAEDLPF  112 (233)
T ss_dssp             ---SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S
T ss_pred             HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEEcCHHHhcC
Confidence            34445555566777889999999999999999885 3 46999999999 99999999998887 499999999999999


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ++++||+|++....+.+   .++...+++++|+|||||++++
T Consensus       113 ~d~sfD~v~~~fglrn~---~d~~~~l~E~~RVLkPGG~l~i  151 (233)
T PF01209_consen  113 PDNSFDAVTCSFGLRNF---PDRERALREMYRVLKPGGRLVI  151 (233)
T ss_dssp             -TT-EEEEEEES-GGG----SSHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCceeEEEHHhhHHhh---CCHHHHHHHHHHHcCCCeEEEE
Confidence            99999999987655544   5678899999999999999884

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.69  E-value=1.5e-16  Score=121.10  Aligned_cols=94  Identities=24%  Similarity=0.369  Sum_probs=80.9

Q ss_pred             eeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhcch
Q psy8709         206 IDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFE  284 (319)
Q Consensus       206 LDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~  284 (319)
                      ||+|||+|..+..+++.+..+|+++|+++ +++.++++....    ++.+..+|+.++++++++||+|++....+++   
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec---
Confidence            79999999999999999666999999999 999988877553    4569999999999999999999998888776   


Q ss_pred             hhHHHHHHHHhcccCCCcEEEe
Q psy8709         285 TMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       285 ~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +++..+++++.|+|||||++++
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEeC
Confidence            7889999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02244 tocopherol O-methyltransferase

Probab=99.68  E-value=4.2e-16  Score=147.16  Aligned_cols=120  Identities=17%  Similarity=0.126  Sum_probs=101.4

Q ss_pred             HHHHHHHhccccc-----CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         187 ESYKSAILNNKSL-----FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       187 ~~~~~~i~~~l~~-----~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      ..+.+.++..+..     .++.+|||+|||+|.++..+++....+|+|+|+|+ +++.++++.+..+..++++++.+|+.
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~  178 (340)
T PLN02244         99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL  178 (340)
T ss_pred             HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence            4455556655554     56789999999999999999986345999999999 99999999998888788999999999


Q ss_pred             ccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       261 ~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ++++++++||+|++....+++   .+...+++++.++|||||.+++...
T Consensus       179 ~~~~~~~~FD~V~s~~~~~h~---~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        179 NQPFEDGQFDLVWSMESGEHM---PDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             cCCCCCCCccEEEECCchhcc---CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            988888999999997766555   5677899999999999999998653

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.67  E-value=5.9e-16  Score=140.93  Aligned_cols=119  Identities=18%  Similarity=0.140  Sum_probs=95.7

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHH--hcCCCCcEEEEEcCccccc
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIR--KNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~--~~g~~~~i~~i~~d~~~~~  263 (319)
                      +.+.+...+...++.+|||+|||+|.++..+++. + ..+|+|+|+|+ |++.|+++..  ..+...+++++++|+++++
T Consensus        61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp  140 (261)
T PLN02233         61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP  140 (261)
T ss_pred             HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence            3444445556667889999999999999988874 3 35999999999 9999987653  2223358999999999999


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +++++||+|+++...+++   .++..+++++.|+|||||.+++...+
T Consensus       141 ~~~~sfD~V~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        141 FDDCYFDAITMGYGLRNV---VDRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             CCCCCEeEEEEecccccC---CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            988899999987776655   56789999999999999999876543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.67  E-value=1.8e-16  Score=139.11  Aligned_cols=109  Identities=23%  Similarity=0.255  Sum_probs=96.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||+|||.|.++..+|+.|+ +|+|+|+++ +++.|+.....+++  ++.+....++++....++||+|+|.-+.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVl  134 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVL  134 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence            5678999999999999999999985 999999999 99999999999887  5788888888887666899999997765


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                      .++   +++..+++.+.+++||||.+++++.+..+.
T Consensus       135 EHv---~dp~~~~~~c~~lvkP~G~lf~STinrt~k  167 (243)
T COG2227         135 EHV---PDPESFLRACAKLVKPGGILFLSTINRTLK  167 (243)
T ss_pred             Hcc---CCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence            544   778889999999999999999999876543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.67  E-value=5.8e-16  Score=129.45  Aligned_cols=105  Identities=30%  Similarity=0.388  Sum_probs=91.2

Q ss_pred             CCcceeeccCCCchHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQ-A-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~-~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~  275 (319)
                      ++.+|||+|||+|.++..+++ . +..+++|+|+|+ +++.|+++++..++. +++++++|+.+++  ++ ++||+|++.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~~   80 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIISN   80 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEEc
Confidence            457999999999999999994 3 456999999999 999999999999985 9999999999976  55 799999998


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .+.+++   .+...+++++.++|++||.+++....
T Consensus        81 ~~l~~~---~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   81 GVLHHF---PDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             STGGGT---SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             Cchhhc---cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            877655   66778999999999999999987665

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.66  E-value=7.9e-16  Score=134.41  Aligned_cols=109  Identities=22%  Similarity=0.265  Sum_probs=92.1

Q ss_pred             hcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEE
Q psy8709         194 LNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDII  272 (319)
Q Consensus       194 ~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~I  272 (319)
                      +..+...++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.++++....++ .++++...|+.+.+++ ++||+|
T Consensus        23 ~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~I   99 (197)
T PRK11207         23 LEAVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFD-GEYDFI   99 (197)
T ss_pred             HHhcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcC-CCcCEE
Confidence            3334455668999999999999999999876 999999999 99999999888887 5689999999887665 679999


Q ss_pred             EeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +++.++|++ .......+++++.++|+|||++++
T Consensus       100 ~~~~~~~~~-~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        100 LSTVVLMFL-EAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             EEecchhhC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence            999887765 345788999999999999999543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.65  E-value=1.4e-15  Score=142.45  Aligned_cols=133  Identities=19%  Similarity=0.196  Sum_probs=102.3

Q ss_pred             CceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC
Q psy8709         171 AAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD  249 (319)
Q Consensus       171 a~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~  249 (319)
                      ...+.++.++. .++.....+.+...+...++++|||+|||+|.++..++..|...|+|+|+|+ ++..++...+..+..
T Consensus        93 ~~~~~~~~~~~-ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~  171 (322)
T PRK15068         93 PFSLFGIHIDT-EWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND  171 (322)
T ss_pred             CccccCeeecc-eehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC
Confidence            34444444443 3444444556666776667899999999999999999998877899999999 887655443333333


Q ss_pred             CcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         250 SQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       250 ~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .++.++.++++++++ .++||+|+|..+.|+.   .++..+++++++.|+|||.+++++
T Consensus       172 ~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~---~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        172 QRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHR---RSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             CCeEEEeCCHHHCCC-cCCcCEEEECChhhcc---CCHHHHHHHHHHhcCCCcEEEEEE
Confidence            589999999999887 5889999997776654   567889999999999999999875

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.64  E-value=1.8e-15  Score=137.10  Aligned_cols=123  Identities=24%  Similarity=0.222  Sum_probs=108.8

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      .....+.+...+.+.+|++|||||||.|.+++.+++.-..+|+|+++|+ +.+.+++.++..|+..+++++..|..++. 
T Consensus        57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-  135 (283)
T COG2230          57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-  135 (283)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-
Confidence            3566788889999999999999999999999999997445999999999 99999999999999889999999998865 


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                        ++||.|+|-.++.++.. +..+.+++.++++|+|||.++..+.+..
T Consensus       136 --e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~I~~~  180 (283)
T COG2230         136 --EPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHSITGP  180 (283)
T ss_pred             --cccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence              44999999999888755 5689999999999999999997776543

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.64  E-value=2.2e-15  Score=134.39  Aligned_cols=118  Identities=17%  Similarity=0.194  Sum_probs=99.5

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ..+.+.++..+...++.+|||+|||+|.++..+++.  +..+|+|+|+++ +++.+++++...++ ++++++.+|+.+.+
T Consensus        31 ~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~  109 (231)
T TIGR02752        31 KKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP  109 (231)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC
Confidence            445566777777788899999999999999999874  345999999999 99999999887777 68999999999888


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ++.++||+|++....+++   ++...+++++.++|+|||++++..
T Consensus       110 ~~~~~fD~V~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       110 FDDNSFDYVTIGFGLRNV---PDYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             CCCCCccEEEEecccccC---CCHHHHHHHHHHHcCcCeEEEEEE
Confidence            777899999987665544   566789999999999999998644

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00452 methyltransferase, putative

Probab=99.64  E-value=1.5e-15  Score=141.07  Aligned_cols=134  Identities=14%  Similarity=0.119  Sum_probs=103.4

Q ss_pred             CceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC
Q psy8709         171 AAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD  249 (319)
Q Consensus       171 a~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~  249 (319)
                      ...+.++.+ +..++.+.....++..+...++++|||+|||+|.++..++..|...|+|+|+|+ |+..+....+..+..
T Consensus        92 ~~~l~~~~~-~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~  170 (314)
T TIGR00452        92 PFELSGIKI-DSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND  170 (314)
T ss_pred             CcccccccC-CHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC
Confidence            334444444 345556666677777777788899999999999999999888877899999999 887654333222223


Q ss_pred             CcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         250 SQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       250 ~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .++.+..+++++++.. .+||+|+|..+.++.   .++..+|+++++.|+|||.|++++.
T Consensus       171 ~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~---~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       171 KRAILEPLGIEQLHEL-YAFDTVFSMGVLYHR---KSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             CCeEEEECCHHHCCCC-CCcCEEEEcchhhcc---CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            5788999999888754 589999998877665   5667899999999999999998754

Known examples to date are restricted to the proteobacteria.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.64  E-value=1.6e-15  Score=138.54  Aligned_cols=123  Identities=25%  Similarity=0.279  Sum_probs=98.7

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ...+..+.+.+.+.+.+|.+|||||||.|.++..+++. |+ +|+|+.+|+ ..+.+++.++..|+.+++++...|..++
T Consensus        46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~  124 (273)
T PF02353_consen   46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL  124 (273)
T ss_dssp             HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence            34677888999999999999999999999999999997 65 999999999 9999999999999999999999999876


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      +   .+||.|+|-.++.++. ....+.+++.+.++|||||.++++..+..
T Consensus       125 ~---~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~~  170 (273)
T PF02353_consen  125 P---GKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTITHR  170 (273)
T ss_dssp             -----S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred             C---CCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence            5   3899999988876654 36789999999999999999998766543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.63  E-value=1.2e-15  Score=142.26  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=92.8

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||||||+|.++..+++.|. +|+|+|+++ +++.|+++....+...+++++++++++++++.++||+|++..+.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            4567999999999999999998765 999999999 99999988766655568999999999887777899999987776


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +++   .+...+++++.++|||||.+++++.+.
T Consensus       209 eHv---~d~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        209 EHV---ANPAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             Hhc---CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence            665   567889999999999999999887543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.63  E-value=2.1e-15  Score=131.53  Aligned_cols=110  Identities=19%  Similarity=0.246  Sum_probs=89.6

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCcee
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVD  270 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD  270 (319)
                      .+...+...++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.++++...+++  ++.+...|+...+++ ++||
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD   96 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALN-EDYD   96 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhcccc-CCCC
Confidence            333444455568999999999999999999875 999999999 99999998888776  377888888765554 6899


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +|+++.+++++. ......+++++.++|+|||++++
T Consensus        97 ~I~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477        97 FIFSTVVFMFLQ-AGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             EEEEecccccCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence            999988877653 35678999999999999998553

Part of a tellurite-reducing operon tehA and tehB

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.62  E-value=2e-15  Score=136.93  Aligned_cols=112  Identities=19%  Similarity=0.244  Sum_probs=94.2

Q ss_pred             HhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCcee
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVD  270 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD  270 (319)
                      +++.+. .++.+|||+|||+|.++..+++.+. +|+|+|+|+ |++.|++++...++.++++++++|+.++. .+.++||
T Consensus        37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD  114 (255)
T PRK11036         37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVD  114 (255)
T ss_pred             HHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCC
Confidence            344443 3457999999999999999999865 999999999 99999999998888788999999998764 4557999


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +|++..+.+++   .++..++.++.++|||||++++...
T Consensus       115 ~V~~~~vl~~~---~~~~~~l~~~~~~LkpgG~l~i~~~  150 (255)
T PRK11036        115 LILFHAVLEWV---ADPKSVLQTLWSVLRPGGALSLMFY  150 (255)
T ss_pred             EEEehhHHHhh---CCHHHHHHHHHHHcCCCeEEEEEEE
Confidence            99998887766   4567899999999999999986543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.60  E-value=3.3e-15  Score=135.57  Aligned_cols=140  Identities=19%  Similarity=0.189  Sum_probs=112.4

Q ss_pred             HhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh
Q psy8709         167 AQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK  245 (319)
Q Consensus       167 a~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~  245 (319)
                      .+.|+-.++++.+|. .|+++...+.+...+....|++|||||||+|+.+..++..|++.|+|+|.+. ...+.....+-
T Consensus        82 WRKGPf~l~gi~IDt-EWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~  160 (315)
T PF08003_consen   82 WRKGPFSLFGIHIDT-EWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHF  160 (315)
T ss_pred             cccCCcccCCEeecc-cccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHH
Confidence            466788899999985 7888888888999988889999999999999999999999999999999999 55443322222


Q ss_pred             cCCCCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         246 NKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       246 ~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .|....+.++...+++++. .+.||+|+|-+++||.   .++-..|.+++..|+|||.+++++..+
T Consensus       161 lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHr---r~Pl~~L~~Lk~~L~~gGeLvLETlvi  222 (315)
T PF08003_consen  161 LGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHR---RSPLDHLKQLKDSLRPGGELVLETLVI  222 (315)
T ss_pred             hCCCccEEEcCcchhhccc-cCCcCEEEEeeehhcc---CCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence            3333345555567777776 5899999998887775   667788999999999999999877653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.60  E-value=1.5e-14  Score=115.71  Aligned_cols=118  Identities=23%  Similarity=0.286  Sum_probs=95.0

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-  262 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-  262 (319)
                      ...+...+...+...++.+|||+|||+|.++..+++. +..+|+++|+++ +++.++++++..+. .+++++.+|+... 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~   82 (124)
T TIGR02469         4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEAL   82 (124)
T ss_pred             hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccC
Confidence            4556666777777777789999999999999999985 457999999999 99999999988877 4789999987653 


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +...++||.|++....      .....+++.+.+.|+|||.++++..|
T Consensus        83 ~~~~~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~li~~~~~  124 (124)
T TIGR02469        83 EDSLPEPDRVFIGGSG------GLLQEILEAIWRRLRPGGRIVLNAIT  124 (124)
T ss_pred             hhhcCCCCEEEECCcc------hhHHHHHHHHHHHcCCCCEEEEEecC
Confidence            2223689999986532      33468999999999999999988654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.60  E-value=8.8e-15  Score=126.26  Aligned_cols=111  Identities=23%  Similarity=0.316  Sum_probs=90.3

Q ss_pred             HhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI  271 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~  271 (319)
                      +++..+..++.++||+|||.|+.+.++++.|. .|+++|.|+ .++.+.+.+...++  .++....|+.+..++ +.||+
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~-~~yD~   97 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFP-EEYDF   97 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-T-TTEEE
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhcccc-CCcCE
Confidence            33344555678999999999999999999998 999999999 99999998888887  499999999988876 78999


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      |++..+++++.. +..+.++..+...++|||++++.+
T Consensus        98 I~st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   98 IVSTVVFMFLQR-ELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             EEEESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEEEE
Confidence            999888877654 677999999999999999988743

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.60  E-value=6.7e-15  Score=133.10  Aligned_cols=114  Identities=19%  Similarity=0.251  Sum_probs=93.4

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ....+.+++.+...++.+|||+|||+|.++..+++.+ .+|+++|+|+ |++.++++..      ...++.+|+++++++
T Consensus        28 ~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~  100 (251)
T PRK10258         28 RQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLA  100 (251)
T ss_pred             HHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCC
Confidence            4455556666665566899999999999999988876 4999999999 9988876532      346789999998888


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .++||+|+++.+.+|.   .++..++.++.++|+|||.+++++..
T Consensus       101 ~~~fD~V~s~~~l~~~---~d~~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        101 TATFDLAWSNLAVQWC---GNLSTALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             CCcEEEEEECchhhhc---CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            7899999999887765   56789999999999999999987543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.59  E-value=1.1e-14  Score=132.75  Aligned_cols=116  Identities=19%  Similarity=0.269  Sum_probs=94.6

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      ...++..+.+.++.+|||+|||+|..+..+++....+|+|+|+|+ +++.++++...   .+++.++.+|+.+.+++.++
T Consensus        41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~  117 (263)
T PTZ00098         41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENT  117 (263)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCC
Confidence            445566677788899999999999999988875344999999999 99999887643   25799999999888888889


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ||+|++....+++ ...+...++++++++|||||.+++...
T Consensus       118 FD~V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        118 FDMIYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             eEEEEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999986554443 224678999999999999999998654

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.58  E-value=1.1e-14  Score=125.83  Aligned_cols=102  Identities=20%  Similarity=0.225  Sum_probs=88.0

Q ss_pred             CCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      ++.+|||+|||+|..+..+++ .+..+|+|+|+++ +++.|+++++.+++. +++++++|+.++.. .++||+|+++.. 
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-~~~fDlV~~~~~-  121 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-EEKFDVVTSRAV-  121 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-CCCccEEEEccc-
Confidence            478999999999999998887 4557999999999 999999999999984 59999999988766 579999998653 


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                            ..++.+++.+.++|+|||++++.....
T Consensus       122 ------~~~~~~l~~~~~~LkpGG~lv~~~~~~  148 (187)
T PRK00107        122 ------ASLSDLVELCLPLLKPGGRFLALKGRD  148 (187)
T ss_pred             ------cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence                  346789999999999999999776553

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.58  E-value=1.4e-14  Score=123.59  Aligned_cols=114  Identities=24%  Similarity=0.295  Sum_probs=89.3

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHcCCC-EEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAA-KVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV  269 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~-~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f  269 (319)
                      .+.+.+...++.+|||+|||+|.++..+++.+.. +|+++|+++ +++.+++++..+++.+ ++++..|..+.. +.++|
T Consensus        22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~-~~~~f   99 (170)
T PF05175_consen   22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL-PDGKF   99 (170)
T ss_dssp             HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC-CTTCE
T ss_pred             HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc-cccce
Confidence            3344444446689999999999999999997543 799999999 9999999999999855 999999987643 35899


Q ss_pred             eEEEeccchhhhcc--hhhHHHHHHHHhcccCCCcEEEee
Q psy8709         270 DIIISEWMGYFLLF--ETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       270 D~Iis~~~~~~l~~--~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      |+|+||++.+.-..  ......++..+.++|+|||.+++-
T Consensus       100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv  139 (170)
T PF05175_consen  100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV  139 (170)
T ss_dssp             EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence            99999998654321  135788999999999999998653

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.57  E-value=1.9e-14  Score=123.98  Aligned_cols=103  Identities=21%  Similarity=0.275  Sum_probs=85.5

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      .++.+|||+|||+|.++..++.. +..+|+|+|.|+ +++.++++++.+++ ++++++++|+.++. ..++||+|+++..
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~-~~~~fD~I~s~~~  118 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQ-HEEQFDVITSRAL  118 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhcc-ccCCccEEEehhh
Confidence            35789999999999999998875 356899999999 99999999988887 57999999998864 3478999998752


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                             ..+..+++.+.++|+|||.+++.....
T Consensus       119 -------~~~~~~~~~~~~~LkpgG~lvi~~~~~  145 (181)
T TIGR00138       119 -------ASLNVLLELTLNLLKVGGYFLAYKGKK  145 (181)
T ss_pred             -------hCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence                   234567888899999999999775443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.57  E-value=1.7e-14  Score=130.40  Aligned_cols=106  Identities=17%  Similarity=0.267  Sum_probs=90.8

Q ss_pred             CCCcceeeccCCCchHHHHHHH---cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQ---AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~---~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      .++.+|||+|||+|.++..+++   .+..+++|+|+|+ |++.|++++...+...+++++.+|+.+++++  .+|+|+++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~  132 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN  132 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence            3557999999999999988876   2456999999999 9999999998888767899999999887654  59999998


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ...+++.. .....+++++++.|||||.+++..
T Consensus       133 ~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        133 FTLQFLEP-SERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             hHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            88877653 456889999999999999999875

>KOG1540|consensus

Probab=99.56  E-value=2.7e-14  Score=125.66  Aligned_cols=114  Identities=19%  Similarity=0.221  Sum_probs=98.5

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CC------CEEEEEecHH-HHHHHHHHHHhcCCCCc--EEEEEcC
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GA------AKVFAIEKSD-IAYETIDIIRKNKYDSQ--IEVYHKL  258 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~------~~V~gvD~s~-~i~~a~~~~~~~g~~~~--i~~i~~d  258 (319)
                      |.+.....+...++.++||++||||-++..+.+. +.      ++|+.+|+++ |+..+.++..+.++...  +.++.+|
T Consensus        88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d  167 (296)
T KOG1540|consen   88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD  167 (296)
T ss_pred             HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence            5677778888888999999999999999998884 33      6999999999 99999999888777555  9999999


Q ss_pred             ccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       259 ~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      ++++++++.+||...+..   .+..-..+++.+++++|+|||||+|.
T Consensus       168 AE~LpFdd~s~D~yTiaf---GIRN~th~~k~l~EAYRVLKpGGrf~  211 (296)
T KOG1540|consen  168 AEDLPFDDDSFDAYTIAF---GIRNVTHIQKALREAYRVLKPGGRFS  211 (296)
T ss_pred             cccCCCCCCcceeEEEec---ceecCCCHHHHHHHHHHhcCCCcEEE
Confidence            999999999999999543   33444678899999999999999987

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.56  E-value=1.7e-14  Score=130.94  Aligned_cols=106  Identities=16%  Similarity=0.228  Sum_probs=88.5

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      ..++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+ |++.|++        .+++++.+|++++. +.++
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d~~~~~-~~~~   89 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--------RGVDARTGDVRDWK-PKPD   89 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--------cCCcEEEcChhhCC-CCCC
Confidence            45566677777899999999999999999886 345999999999 9988864        24788999998764 4579


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ||+|+++.+++|+   .+...+++++.+.|||||.+++..
T Consensus        90 fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         90 TDVVVSNAALQWV---PEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             ceEEEEehhhhhC---CCHHHHHHHHHHhCCCCcEEEEEc
Confidence            9999999988876   456889999999999999999864

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.56  E-value=2.6e-14  Score=124.74  Aligned_cols=148  Identities=16%  Similarity=0.165  Sum_probs=116.0

Q ss_pred             CCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhccccc-CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-H
Q psy8709         158 GTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSL-FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-I  235 (319)
Q Consensus       158 GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~  235 (319)
                      |++.+.+.+.+++.+.+...+....++.++.+.+.+++.+.. .++.+|||+|||+|.++..++..++.+|+++|.++ +
T Consensus         9 ~~~~mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a   88 (199)
T PRK10909          9 GSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAV   88 (199)
T ss_pred             CCCCEEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHH
Confidence            445566777778888888777777899999998888887643 56789999999999999976666677999999999 9


Q ss_pred             HHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEEEeccchhhhcchhhHHHHHHHHh--cccCCCcEEEeecCc
Q psy8709         236 AYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDIIISEWMGYFLLFETMIDSVIDARN--RFLKPDGVVCPNRFT  310 (319)
Q Consensus       236 i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~t  310 (319)
                      ++.++++++.++. .+++++++|+.+.. ...++||+|++++++..    .....++..+.  .+|+|+|++++++..
T Consensus        89 ~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~----g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909         89 AQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPFRK----GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             HHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCCCC----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            9999999999987 58999999987642 22357999999999532    23344445444  458999999988755

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.55  E-value=1.3e-14  Score=115.36  Aligned_cols=108  Identities=24%  Similarity=0.288  Sum_probs=90.0

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEEEeccch
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDIIISEWMG  278 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~~~~  278 (319)
                      |.+|||+|||+|.++..+++.+..+++|+|+++ .++.++.++..++..++++++++|+.+..  ++.++||+|++|+++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            468999999999999999998767999999999 99999999999988889999999998875  667899999999987


Q ss_pred             hhhcc-----hhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         279 YFLLF-----ETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       279 ~~l~~-----~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .....     ......+++++.++|+|||.+++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            53211     12457889999999999999987654

...

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.55  E-value=3.5e-14  Score=131.05  Aligned_cols=102  Identities=22%  Similarity=0.276  Sum_probs=88.0

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.+++++..+++  ++++...|+....+ .++||+|++..++
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl  194 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVL  194 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchh
Confidence            3456999999999999999999875 999999999 99999999988877  68888889877655 4789999999887


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +++. .+....+++++.++|+|||++++
T Consensus       195 ~~l~-~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        195 MFLN-RERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             hhCC-HHHHHHHHHHHHHhcCCCcEEEE
Confidence            7754 45778999999999999999654

>KOG1270|consensus

Probab=99.54  E-value=7.9e-15  Score=129.74  Aligned_cols=103  Identities=20%  Similarity=0.276  Sum_probs=85.5

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCC-----cEEEEEcCccccccCCCceeEEEec
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDS-----QIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~-----~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      |++|||+|||+|.++..+++.|+ .|+|||+++ |++.|++.........     ++.+.+.+++...   ++||.|+|.
T Consensus        90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence            47899999999999999999986 999999999 9999998855443322     3667777777654   459999987


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      -+..+.   .++..++..+.+.|||||.+++++..-
T Consensus       166 evleHV---~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  166 EVLEHV---KDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             HHHHHH---hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            775544   889999999999999999999887653

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.54  E-value=1e-13  Score=117.72  Aligned_cols=123  Identities=24%  Similarity=0.255  Sum_probs=107.8

Q ss_pred             CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709         182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL  259 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~  259 (319)
                      .+++.++++...+..+.+.++..++|||||||.++..++.. +..+|+++|.++ +++..++|+++.+. +|++++.+++
T Consensus        15 ~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~A   93 (187)
T COG2242          15 GPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDA   93 (187)
T ss_pred             CCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccc
Confidence            45788999999999999999999999999999999999964 567999999999 99999999999996 8999999999


Q ss_pred             cccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       260 ~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      .+......++|.|+....       ..++.+++.+...|||||+++.+..|+.
T Consensus        94 p~~L~~~~~~daiFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE  139 (187)
T COG2242          94 PEALPDLPSPDAIFIGGG-------GNIEEILEAAWERLKPGGRLVANAITLE  139 (187)
T ss_pred             hHhhcCCCCCCEEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence            876433347999996543       4578899999999999999999988764

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.54  E-value=7.2e-14  Score=132.76  Aligned_cols=118  Identities=12%  Similarity=0.075  Sum_probs=94.5

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCC--CcEEEEEcCccccccC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYD--SQIEVYHKLLEDVELP  265 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~--~~i~~i~~d~~~~~~~  265 (319)
                      .+.+++.++...+.+|||+|||+|.++..+++. +..+|+++|.|+ +++.++++++.++..  .+++++.+|.... .+
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~  295 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE  295 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence            445666666555679999999999999999885 456999999999 999999999888653  3789999888653 33


Q ss_pred             CCceeEEEeccchhhhc--chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         266 VESVDIIISEWMGYFLL--FETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .++||+|+||+++|...  ......+++..+.++|+|||.+++..
T Consensus       296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            46899999999987542  22345788999999999999999764

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.54  E-value=5.2e-14  Score=128.79  Aligned_cols=106  Identities=26%  Similarity=0.374  Sum_probs=90.5

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-GA-AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      ..++.+|||+|||+|..+..+++. +. .+|+|+|+++ +++.|+++....+. ++++++.+|+++++++.++||+|+++
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEc
Confidence            445689999999999988877763 43 4899999999 99999999888887 58999999999988877899999998


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .++++.   .+...+++++.++|||||++++..
T Consensus       154 ~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        154 CVINLS---PDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             CcccCC---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence            876654   456789999999999999999864

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.53  E-value=5e-14  Score=127.84  Aligned_cols=111  Identities=19%  Similarity=0.240  Sum_probs=91.7

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV  266 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~  266 (319)
                      ..+.++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.++++.      .++.++.+|+.++. +.
T Consensus        19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-~~   91 (258)
T PRK01683         19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-PP   91 (258)
T ss_pred             HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-CC
Confidence            4455666667777889999999999999999875 456999999999 999887653      46889999998764 34


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ++||+|+++.+++++   .+...+++++.+.|||||.+++...
T Consensus        92 ~~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         92 QALDLIFANASLQWL---PDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             CCccEEEEccChhhC---CCHHHHHHHHHHhcCCCcEEEEECC
Confidence            689999999888776   4567899999999999999998653

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.53  E-value=3.1e-14  Score=110.76  Aligned_cols=95  Identities=17%  Similarity=0.322  Sum_probs=79.1

Q ss_pred             eeeccCCCchHHHHHHHc---C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec-cch
Q psy8709         205 VIDVGAGTGILSIFAAQA---G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE-WMG  278 (319)
Q Consensus       205 VLDiGcGtG~ls~~la~~---g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~-~~~  278 (319)
                      |||+|||+|..+..+++.   + ..+++|+|+|+ |++.++++....+.  +++++++|+.+++...++||+|++. .+.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~   78 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL   78 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence            799999999999999986   2 26999999999 99999999887665  8899999999988777899999994 435


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCc
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDG  302 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG  302 (319)
                      ++ ...+....+++++.++|+|||
T Consensus        79 ~~-~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   79 HH-LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred             CC-CCHHHHHHHHHHHHHHhCCCC
Confidence            55 566788999999999999998

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.52  E-value=3.8e-14  Score=126.26  Aligned_cols=110  Identities=24%  Similarity=0.311  Sum_probs=94.3

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEEEecc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDIIISEW  276 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~~  276 (319)
                      ...+|||+|||+|.+++.++++ ...+++|||+.+ +.+.|+++++.+++.++++++++|+.++.  .+..+||+|+||+
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP  123 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP  123 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence            3589999999999999999997 557999999999 99999999999999999999999998874  3345799999999


Q ss_pred             chhhhcch---------------hhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         277 MGYFLLFE---------------TMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       277 ~~~~l~~~---------------~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +++-....               ..++.+++.+.++|||||.+.+-...
T Consensus       124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~  172 (248)
T COG4123         124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP  172 (248)
T ss_pred             CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence            98754322               23788999999999999999865543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.52  E-value=7.2e-14  Score=137.68  Aligned_cols=112  Identities=20%  Similarity=0.214  Sum_probs=92.4

Q ss_pred             HhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI  271 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~  271 (319)
                      ++..+...++.+|||+|||+|..+..+++....+|+|+|+|+ ++..|+++..  +...+++++.+|+.+.+++.++||+
T Consensus       258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~  335 (475)
T PLN02336        258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDV  335 (475)
T ss_pred             HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEE
Confidence            334444566789999999999999988885445999999999 9999987765  3335899999999988887789999


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      |+|..+.+++   .+...++++++++|||||.++++..
T Consensus       336 I~s~~~l~h~---~d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        336 IYSRDTILHI---QDKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             EEECCccccc---CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9998776555   5678999999999999999998754

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.52  E-value=1.2e-13  Score=120.56  Aligned_cols=124  Identities=20%  Similarity=0.248  Sum_probs=101.2

Q ss_pred             CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC
Q psy8709         182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL  258 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d  258 (319)
                      .+++.++++...+..+...++.+|||+|||+|.++..+++.  +..+|+++|+++ +++.++++++.+++.+++.++.+|
T Consensus        21 ~~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d  100 (198)
T PRK00377         21 IPMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE  100 (198)
T ss_pred             CCCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence            34566777777778888889999999999999999998874  346999999999 999999999998866789999999


Q ss_pred             ccccc-cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         259 LEDVE-LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       259 ~~~~~-~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +.+.. ...++||.|+++..      ...+..+++.+.+.|+|||+++++.+++
T Consensus       101 ~~~~l~~~~~~~D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (198)
T PRK00377        101 APEILFTINEKFDRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAILL  148 (198)
T ss_pred             hhhhHhhcCCCCCEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence            87642 22368999997542      1456788999999999999999876654

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.52  E-value=4.6e-14  Score=120.86  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=88.5

Q ss_pred             cccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEE
Q psy8709         195 NNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIII  273 (319)
Q Consensus       195 ~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Ii  273 (319)
                      ..++...-.++||+|||.|.++..++.+ +.+++++|+|+ .++.|++++...   ++|+++++++.+.. |.++||+|+
T Consensus        37 aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~-P~~~FDLIV  111 (201)
T PF05401_consen   37 AALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFW-PEGRFDLIV  111 (201)
T ss_dssp             HHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEE
T ss_pred             HhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCC-CCCCeeEEE
Confidence            3466666679999999999999999998 46999999999 999999888643   68999999998764 568999999


Q ss_pred             eccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ..-++|++...+++..++..+...|+|||.+++.+.
T Consensus       112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            999999998778899999999999999999998664

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00740 methyltransferase, putative

Probab=99.52  E-value=8.4e-14  Score=125.07  Aligned_cols=106  Identities=18%  Similarity=0.257  Sum_probs=90.2

Q ss_pred             CCcceeeccCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA---GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ++.+|||+|||+|.++..+++.   +..+++|+|+|+ |++.|++++...+...+++++++|+.+++++  .+|+|+++.
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~  130 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF  130 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence            5579999999999999988874   356999999999 9999999988776656899999999987764  589999988


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +.+++.. .....+++++++.|+|||.+++...
T Consensus       131 ~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       131 TLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             chhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence            8777643 4578899999999999999998753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.52  E-value=9.4e-14  Score=127.82  Aligned_cols=114  Identities=27%  Similarity=0.351  Sum_probs=86.1

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      .+++.-..+.+...  ..++++|||+|||+|.+++.+++.|+++|+|+|+++ .++.|++|+..|++.+++.+.  ... 
T Consensus       145 H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~-  219 (295)
T PF06325_consen  145 HPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSE-  219 (295)
T ss_dssp             CHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTS-
T ss_pred             CHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eec-
Confidence            34444444444443  345689999999999999999999999999999999 999999999999998877653  121 


Q ss_pred             cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                       ....++||+|++|...      +.+..++..+.++|+|||++++|-
T Consensus       220 -~~~~~~~dlvvANI~~------~vL~~l~~~~~~~l~~~G~lIlSG  259 (295)
T PF06325_consen  220 -DLVEGKFDLVVANILA------DVLLELAPDIASLLKPGGYLILSG  259 (295)
T ss_dssp             -CTCCS-EEEEEEES-H------HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred             -ccccccCCEEEECCCH------HHHHHHHHHHHHhhCCCCEEEEcc
Confidence             2234899999999764      345677888899999999999764

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.52  E-value=2e-13  Score=118.06  Aligned_cols=118  Identities=29%  Similarity=0.333  Sum_probs=96.6

Q ss_pred             CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709         182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL  259 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~  259 (319)
                      .+...+.++..+++.+...++.+|||+|||+|.++..+++. +..+|+++|+++ +++.+++++..++. .+++++.+|.
T Consensus        12 ~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~   90 (187)
T PRK08287         12 VPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEA   90 (187)
T ss_pred             CCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCc
Confidence            44566777888888888788899999999999999999885 446999999999 99999999988877 5799999987


Q ss_pred             cccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       260 ~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .. .++ ++||+|+++...      ..+..++..+.+.|+|||+++++.
T Consensus        91 ~~-~~~-~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287         91 PI-ELP-GKADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             hh-hcC-cCCCEEEECCCc------cCHHHHHHHHHHhcCCCeEEEEEE
Confidence            53 333 689999986542      234678889999999999999864

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.51  E-value=1.7e-13  Score=120.43  Aligned_cols=115  Identities=22%  Similarity=0.188  Sum_probs=91.3

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ...+...+++.+...++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|..+.
T Consensus        57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~  136 (205)
T PRK13944         57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG  136 (205)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence            3445566667777778889999999999999888874 2 45999999999 9999999999988866799999999775


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ..+..+||+|+++....++         ..++.+.|+|||++++...
T Consensus       137 ~~~~~~fD~Ii~~~~~~~~---------~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        137 LEKHAPFDAIIVTAAASTI---------PSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             CccCCCccEEEEccCcchh---------hHHHHHhcCcCcEEEEEEc
Confidence            4445789999987654322         2456789999999986543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=9.9e-14  Score=126.75  Aligned_cols=117  Identities=26%  Similarity=0.326  Sum_probs=88.8

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      .+++.-..+++-+...  ++++|||+|||+|.+++.+++.|+.+|+|+|++| .++.+++|+..|+....++....+...
T Consensus       146 HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~  223 (300)
T COG2264         146 HPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE  223 (300)
T ss_pred             ChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh
Confidence            3444444444443333  6789999999999999999999999999999999 999999999999985433333333332


Q ss_pred             cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .+ ..++||+|++|-.-      +.+..+...+.+.|||||+++++-
T Consensus       224 ~~-~~~~~DvIVANILA------~vl~~La~~~~~~lkpgg~lIlSG  263 (300)
T COG2264         224 VP-ENGPFDVIVANILA------EVLVELAPDIKRLLKPGGRLILSG  263 (300)
T ss_pred             hc-ccCcccEEEehhhH------HHHHHHHHHHHHHcCCCceEEEEe
Confidence            22 23699999998743      445688889999999999999874

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.50  E-value=3.1e-13  Score=124.84  Aligned_cols=101  Identities=30%  Similarity=0.417  Sum_probs=85.0

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY  279 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~  279 (319)
                      ++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++..+++..++.+..++...  ...++||+|+++... 
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~-  235 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANILA-  235 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecCH-
Confidence            5689999999999999999988888999999999 999999999999887778877776432  334689999998653 


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                           ..+..++.++.++|||||+++++..
T Consensus       236 -----~~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       236 -----EVIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             -----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence                 3456788999999999999998754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.50  E-value=8.4e-14  Score=122.07  Aligned_cols=109  Identities=17%  Similarity=0.152  Sum_probs=88.4

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc-cccc--cCCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL-EDVE--LPVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~-~~~~--~~~~~fD~Iis~  275 (319)
                      ++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.+.+++..++. .++.++++|+ +.++  ++.++||.|+++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            4579999999999999999875 456899999999 99999999988887 6899999999 6665  566789999987


Q ss_pred             cchhhhcch-----hhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         276 WMGYFLLFE-----TMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       276 ~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .+..|....     .....+++++.++|||||.+++.+.+
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~  158 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW  158 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence            654332110     12467899999999999999987654

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.50  E-value=1.3e-13  Score=118.44  Aligned_cols=109  Identities=21%  Similarity=0.204  Sum_probs=88.4

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ...++.+|||+|||+|.++..+++.+. +|+++|+++ +++.+++++..++.  +++++.+|+.+..  .++||+|++++
T Consensus        16 ~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~   90 (179)
T TIGR00537        16 RELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNP   90 (179)
T ss_pred             HhcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECC
Confidence            344557899999999999999999876 999999999 99999999988775  6889999986643  35899999998


Q ss_pred             chhhhcc------------------hhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         277 MGYFLLF------------------ETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       277 ~~~~l~~------------------~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +++....                  ......++.++.++|+|||.+++...+.
T Consensus        91 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~  143 (179)
T TIGR00537        91 PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL  143 (179)
T ss_pred             CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence            8754321                  1125678999999999999998765443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK08317 hypothetical protein; Provisional

Probab=99.50  E-value=2.9e-13  Score=120.44  Aligned_cols=119  Identities=18%  Similarity=0.229  Sum_probs=97.9

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ..+.+.+...+...++.+|||+|||+|.++..+++.  +..+++|+|+++ +++.++++...  ...+++++.+|+...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~   82 (241)
T PRK08317          5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP   82 (241)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC
Confidence            455666777778888899999999999999999885  346999999999 98888877332  2368999999998887


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++.++||+|++..+.+++   .+...+++++.++|+|||.+++..+.
T Consensus        83 ~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         83 FPDGSFDAVRSDRVLQHL---EDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             CCCCCceEEEEechhhcc---CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            777899999988776555   56788999999999999999977653

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.50  E-value=1.1e-13  Score=122.79  Aligned_cols=103  Identities=19%  Similarity=0.194  Sum_probs=88.7

Q ss_pred             cceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709         203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF  280 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~  280 (319)
                      ++|||+|||+|.++..+++. +..+|+|+|+|+ +++.+++++...++.++++++.+|+...+++ ++||+|++..+.++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~   79 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH   79 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence            36999999999999998885 346999999999 9999999999888888999999999766555 68999998777666


Q ss_pred             hcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         281 LLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       281 l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +   .+...+++++.++|+|||.+++...
T Consensus        80 ~---~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       80 I---KDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             C---CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            5   4578999999999999999997654

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.49  E-value=9.8e-14  Score=116.01  Aligned_cols=107  Identities=22%  Similarity=0.245  Sum_probs=82.8

Q ss_pred             HHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         190 KSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       190 ~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      .+.+....+ ..++.+|||+|||+|.++..+++.|. +++|+|+++ +++.           .++.....+......+.+
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~   77 (161)
T PF13489_consen   10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDG   77 (161)
T ss_dssp             HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSS
T ss_pred             HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhcccc
Confidence            333333333 56678999999999999999988877 999999999 7766           123333333334445668


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +||+|+|..+.+++   .++..+++.+.++|||||+++++....
T Consensus        78 ~fD~i~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   78 SFDLIICNDVLEHL---PDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             SEEEEEEESSGGGS---SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             chhhHhhHHHHhhc---ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            99999998888777   568999999999999999999887764

...

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.48  E-value=2.8e-13  Score=127.42  Aligned_cols=122  Identities=20%  Similarity=0.146  Sum_probs=100.9

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+...+.+.....++.+|||+|||+|.++..++..+. +++|+|+++ |+..++.+++..++.+ +.++.+|+.+++++
T Consensus       168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~  245 (329)
T TIGR01177       168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS  245 (329)
T ss_pred             HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc
Confidence            55666777777778888999999999999988877755 999999999 9999999999988854 89999999998877


Q ss_pred             CCceeEEEeccchhhhc------chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         266 VESVDIIISEWMGYFLL------FETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~------~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .++||+|++++++....      .......++.++.++|+|||++++..++
T Consensus       246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~  296 (329)
T TIGR01177       246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT  296 (329)
T ss_pred             cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence            78999999998753211      1133688999999999999998876554

This family is found exclusively in the Archaea.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.48  E-value=1.7e-13  Score=118.05  Aligned_cols=145  Identities=21%  Similarity=0.184  Sum_probs=109.4

Q ss_pred             HHHHhcCCceEEeeecCCCcccHHHHHHHHhccccc--CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHH
Q psy8709         164 IFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSL--FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETI  240 (319)
Q Consensus       164 i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~--~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~  240 (319)
                      +.+++++++.+..++...++++++.+++.+++.+..  ..+.++||+.||+|.++..++.+|+.+|+.||.++ .+...+
T Consensus         3 Ii~G~~kgr~l~~p~~~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~   82 (183)
T PF03602_consen    3 IIGGKYKGRKLKTPKGDNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK   82 (183)
T ss_dssp             --SSTTTT-EEE-TT--TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH
T ss_pred             EEeeecCCCEecCCCCCCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence            455678899999999999999999999999999886  48899999999999999999999999999999999 999999


Q ss_pred             HHHHhcCCCCcEEEEEcCccccc--c--CCCceeEEEeccchhhhcchhhHHHHHHHHh--cccCCCcEEEeecCcc
Q psy8709         241 DIIRKNKYDSQIEVYHKLLEDVE--L--PVESVDIIISEWMGYFLLFETMIDSVIDARN--RFLKPDGVVCPNRFTL  311 (319)
Q Consensus       241 ~~~~~~g~~~~i~~i~~d~~~~~--~--~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~t~  311 (319)
                      +|++..+..++++++.+|+...-  .  ...+||+|+.++|+..-.   ....++..+.  .+|+++|.+++.+..-
T Consensus        83 ~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~---~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen   83 KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL---YYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH---HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccch---HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            99999988778999999975432  2  458999999999875421   1355666665  8999999999887543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK14967 putative methyltransferase; Provisional

Probab=99.47  E-value=6.3e-13  Score=118.27  Aligned_cols=111  Identities=21%  Similarity=0.210  Sum_probs=88.6

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      ....++.+|||+|||+|.++..+++.+..+++++|+++ +++.+++++..++.  +++++.+|+.+. ++.++||+|+++
T Consensus        32 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~n  108 (223)
T PRK14967         32 EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSN  108 (223)
T ss_pred             cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEEC
Confidence            34566789999999999999999987767999999999 99999999988776  588999998764 455789999999


Q ss_pred             cchhhhcc------------------hhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         276 WMGYFLLF------------------ETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       276 ~~~~~l~~------------------~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +++.....                  ...+..++.++.++|||||++++...+
T Consensus       109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            86542111                  112567889999999999999975433

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.47  E-value=4.7e-13  Score=118.20  Aligned_cols=115  Identities=19%  Similarity=0.163  Sum_probs=91.8

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      ....+...+++.+...++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.++++++..+. .+++++.+|...
T Consensus        60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~  138 (212)
T PRK13942         60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTL  138 (212)
T ss_pred             CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCccc
Confidence            44566677777778888999999999999999988885 3 35999999999 99999999998887 689999999987


Q ss_pred             cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ...+..+||+|++.....         .+...+.+.|||||++++...
T Consensus       139 ~~~~~~~fD~I~~~~~~~---------~~~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        139 GYEENAPYDRIYVTAAGP---------DIPKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             CCCcCCCcCEEEECCCcc---------cchHHHHHhhCCCcEEEEEEc
Confidence            655567899999865321         122355668999999987543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.46  E-value=6.9e-13  Score=117.33  Aligned_cols=114  Identities=18%  Similarity=0.126  Sum_probs=90.8

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ......+++.+...++.+|||+|||+|.++..+++..  ..+|+++|+++ +++.|+++++.+++ ++++++.+|..+..
T Consensus        63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~  141 (215)
T TIGR00080        63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGW  141 (215)
T ss_pred             HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCC
Confidence            4455666677777888999999999999999998863  24699999999 99999999999988 78999999997754


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ....+||+|+++....         .+...+.+.|+|||++++...+
T Consensus       142 ~~~~~fD~Ii~~~~~~---------~~~~~~~~~L~~gG~lv~~~~~  179 (215)
T TIGR00080       142 EPLAPYDRIYVTAAGP---------KIPEALIDQLKEGGILVMPVGE  179 (215)
T ss_pred             cccCCCCEEEEcCCcc---------cccHHHHHhcCcCcEEEEEEcC
Confidence            4446899999865422         2234567789999999876543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.46  E-value=8.4e-13  Score=115.08  Aligned_cols=122  Identities=20%  Similarity=0.272  Sum_probs=97.0

Q ss_pred             CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709         182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL  259 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~  259 (319)
                      .++........+...+...++.+|||+|||+|.++..+++. +..+|+++|+++ +++.++++++.++. .+++++.+|+
T Consensus        21 ~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~   99 (196)
T PRK07402         21 IPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSA   99 (196)
T ss_pred             CCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECch
Confidence            45667777878888888888899999999999999998874 446999999999 99999999998887 5799999998


Q ss_pred             ccc-ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         260 EDV-ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       260 ~~~-~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .+. ......+|.++...       ...+..++.++.++|+|||.+++...+.
T Consensus       100 ~~~~~~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402        100 PECLAQLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             HHHHhhCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence            652 21123457766432       1345788999999999999999887654

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.46  E-value=1.9e-14  Score=111.36  Aligned_cols=95  Identities=23%  Similarity=0.313  Sum_probs=62.8

Q ss_pred             eeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-c-CCCceeEEEeccchhhh
Q psy8709         206 IDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-L-PVESVDIIISEWMGYFL  281 (319)
Q Consensus       206 LDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~-~~~~fD~Iis~~~~~~l  281 (319)
                      ||+|||+|.++..+.+. +..+++|+|+|+ |++.+++++...+. .+...+..+..+.. . +.++||+|++..+.+++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            79999999999998885 556999999999 99888888887764 34444444444332 1 12599999998888877


Q ss_pred             cchhhHHHHHHHHhcccCCCcEE
Q psy8709         282 LFETMIDSVIDARNRFLKPDGVV  304 (319)
Q Consensus       282 ~~~~~~~~~l~~~~r~LkpgG~l  304 (319)
                         +++..+++.++++|+|||+|
T Consensus        80 ---~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 ---EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ---S-HHHHHHHHTTT-TSS-EE
T ss_pred             ---hhHHHHHHHHHHHcCCCCCC
Confidence               77889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.45  E-value=7.5e-13  Score=122.05  Aligned_cols=128  Identities=23%  Similarity=0.272  Sum_probs=98.9

Q ss_pred             CcccHHHHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC
Q psy8709         182 TPIRTESYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL  258 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d  258 (319)
                      .++.++.+.+.++..+. ..+..+|||+|||+|.++..++.. +..+|+|+|+|+ +++.|+++++.+++.++++++.+|
T Consensus        94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d  173 (284)
T TIGR00536        94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN  173 (284)
T ss_pred             CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence            34556777777665542 222368999999999999999985 346999999999 999999999999886679999999


Q ss_pred             ccccccCCCceeEEEeccchhhhc----------ch------------hhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         259 LEDVELPVESVDIIISEWMGYFLL----------FE------------TMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       259 ~~~~~~~~~~fD~Iis~~~~~~l~----------~~------------~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.+. ++..+||+|++|+++....          ++            ..+..++..+.++|+|||++++....
T Consensus       174 ~~~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~  246 (284)
T TIGR00536       174 LFEP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN  246 (284)
T ss_pred             hhcc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence            8763 3434899999997653210          11            24677899999999999999987764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.45  E-value=1e-12  Score=121.16  Aligned_cols=125  Identities=18%  Similarity=0.142  Sum_probs=94.2

Q ss_pred             cHHHHHHHHhc-ccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         185 RTESYKSAILN-NKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       185 ~~~~~~~~i~~-~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      .++.+....+. .+...++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++.++++++.+|+.+
T Consensus       104 ~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~  183 (284)
T TIGR03533       104 PIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA  183 (284)
T ss_pred             chHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence            33444433332 232234568999999999999999985 446999999999 999999999999987789999999865


Q ss_pred             cccCCCceeEEEeccchhhh----------cch------------hhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         262 VELPVESVDIIISEWMGYFL----------LFE------------TMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l----------~~~------------~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      . ++.++||+|++|+++.-.          .++            .....++..+.++|+|||+++++...
T Consensus       184 ~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~  253 (284)
T TIGR03533       184 A-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN  253 (284)
T ss_pred             c-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            3 344689999999875311          011            23467899999999999999987653

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK06922 hypothetical protein; Provisional

Probab=99.45  E-value=6.2e-13  Score=132.31  Aligned_cols=111  Identities=18%  Similarity=0.245  Sum_probs=91.1

Q ss_pred             cccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEE
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDII  272 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~I  272 (319)
                      ....++.+|||+|||+|.++..+++ .+..+|+|+|+|+ |++.|+++....+  .++.++++|+.+++  ++.++||+|
T Consensus       414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvV  491 (677)
T PRK06922        414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTI  491 (677)
T ss_pred             hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEE
Confidence            3445678999999999999888887 4556999999999 9999998876554  47889999998876  667899999


Q ss_pred             Eeccchhhhc----------chhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         273 ISEWMGYFLL----------FETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       273 is~~~~~~l~----------~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +++++.|++.          ....+..+++++.++|||||.+++...
T Consensus       492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9998777542          135678999999999999999998653

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.45  E-value=4.9e-13  Score=119.08  Aligned_cols=101  Identities=22%  Similarity=0.305  Sum_probs=85.2

Q ss_pred             CCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      ++.+|||+|||+|.++..+++.+ ..+++++|+++ ++..+.+...     +++.++.+|+.+.+++.++||+|+++.+.
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l  108 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL  108 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence            34689999999999999998864 45799999999 8887776543     37889999999888777899999998887


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +++   .++..++.++.++|+|||.+++...
T Consensus       109 ~~~---~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       109 QWC---DDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             hhc---cCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            765   5678899999999999999998653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.45  E-value=7.9e-12  Score=114.61  Aligned_cols=107  Identities=12%  Similarity=0.101  Sum_probs=84.0

Q ss_pred             CcceeeccCCCchHH-HHHH-Hc-CCCEEEEEecHH-HHHHHHHHHHh-cCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         202 NKHVIDVGAGTGILS-IFAA-QA-GAAKVFAIEKSD-IAYETIDIIRK-NKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls-~~la-~~-g~~~V~gvD~s~-~i~~a~~~~~~-~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      +++|+|||||.|.++ ..++ .. +.++++|+|.++ +++.|++.+.. .++.++++|..+|+.+.....+.||+|++..
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~A  203 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLAA  203 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEec
Confidence            378999999977443 3333 33 556899999999 99999999964 7887889999999987643347899999984


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ..++ . .....+++..+.+.|+|||.+++....
T Consensus       204 Li~~-d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~  235 (296)
T PLN03075        204 LVGM-D-KEEKVKVIEHLGKHMAPGALLMLRSAH  235 (296)
T ss_pred             cccc-c-cccHHHHHHHHHHhcCCCcEEEEeccc
Confidence            3332 1 256789999999999999999987643

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.45  E-value=7.7e-13  Score=117.93  Aligned_cols=116  Identities=21%  Similarity=0.246  Sum_probs=94.1

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV  266 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~  266 (319)
                      ...++..+...++.+|||+|||+|.++..++..+  ..+++++|+++ +++.+++++..++...++.++.+|+.+.+.+.
T Consensus        40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  119 (239)
T PRK00216         40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD  119 (239)
T ss_pred             HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence            3344444455567899999999999999998865  47999999999 99999998877666678999999998877666


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ++||+|++....++.   .++..++.++.+.|+|||.+++..
T Consensus       120 ~~~D~I~~~~~l~~~---~~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        120 NSFDAVTIAFGLRNV---PDIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             CCccEEEEecccccC---CCHHHHHHHHHHhccCCcEEEEEE
Confidence            789999976554433   567889999999999999988643

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.45  E-value=7.2e-13  Score=124.94  Aligned_cols=116  Identities=19%  Similarity=0.151  Sum_probs=90.8

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      +.+++.+......+|||+|||+|.++..+++. +..+|+++|+|+ +++.++++++.+++  ..+++.+|+... . .++
T Consensus       186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~-~-~~~  261 (342)
T PRK09489        186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD-I-KGR  261 (342)
T ss_pred             HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc-c-CCC
Confidence            34444444444568999999999999999986 446999999999 99999999999887  356777887552 2 478


Q ss_pred             eeEEEeccchhhhcc--hhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         269 VDIIISEWMGYFLLF--ETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       269 fD~Iis~~~~~~l~~--~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ||+|+||+++|....  ......++.++.++|||||.+++...+
T Consensus       262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            999999999875322  245688999999999999999865443

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.44  E-value=6.4e-13  Score=124.63  Aligned_cols=115  Identities=23%  Similarity=0.241  Sum_probs=91.4

Q ss_pred             HHHHHHHHhccccc-CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         186 TESYKSAILNNKSL-FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       186 ~~~~~~~i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ++.+.+.++..... .++.+|||+|||+|.++..+++. +..+|+++|+|+ |++.|+++...    .+++++.+|+++.
T Consensus        97 ~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l  172 (340)
T PLN02490         97 TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL  172 (340)
T ss_pred             hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC
Confidence            34555555555444 35679999999999999888774 456999999999 99998876542    4678999999998


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +++.++||+|+++.+.+++   .+...+++++.++|+|||.+++.
T Consensus       173 p~~~~sFDvVIs~~~L~~~---~d~~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        173 PFPTDYADRYVSAGSIEYW---PDPQRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             CCCCCceeEEEEcChhhhC---CCHHHHHHHHHHhcCCCcEEEEE
Confidence            8887899999998776654   45568999999999999998764

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.44  E-value=9.8e-13  Score=116.56  Aligned_cols=119  Identities=19%  Similarity=0.192  Sum_probs=94.3

Q ss_pred             HHHHHHHhcccc--cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKS--LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      +.+.+.+++.+.  ..++.+|||+|||+|.++..+++.+. +|+|+|+|+ ++..|++++...+...++++..+|+.+.+
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~  117 (219)
T TIGR02021        39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC  117 (219)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence            344555555544  45678999999999999999998755 999999999 99999999888776568999999998765


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                         ++||+|++....+++ ....+..++.++.+++++++++.+...+
T Consensus       118 ---~~fD~ii~~~~l~~~-~~~~~~~~l~~i~~~~~~~~~i~~~~~~  160 (219)
T TIGR02021       118 ---GEFDIVVCMDVLIHY-PASDMAKALGHLASLTKERVIFTFAPKT  160 (219)
T ss_pred             ---CCcCEEEEhhHHHhC-CHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence               689999986655544 2355778899999999988877765443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.43  E-value=5.9e-13  Score=115.97  Aligned_cols=109  Identities=15%  Similarity=0.141  Sum_probs=87.9

Q ss_pred             CcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---cCCCceeEEEecc
Q psy8709         202 NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---LPVESVDIIISEW  276 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---~~~~~fD~Iis~~  276 (319)
                      ..++||+|||+|.++..+++. +..+++|+|+++ +++.|.+++...++ .+++++++|+.++.   ++.+.+|.|+++.
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            468999999999999988884 556999999999 99999999988888 58999999998653   4456899999887


Q ss_pred             chhhhcch-----hhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         277 MGYFLLFE-----TMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       277 ~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +..|....     -....+++++.++|||||.+++.+-+.
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~  135 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE  135 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            65443211     112578999999999999999776443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.43  E-value=1.5e-12  Score=121.16  Aligned_cols=106  Identities=20%  Similarity=0.217  Sum_probs=86.8

Q ss_pred             cceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709         203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF  280 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~  280 (319)
                      .+|||+|||+|.++..++.. +..+|+++|+|+ +++.|+++++.+++.++++++++|+.+. ++.++||+|++|+++..
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence            68999999999999999885 456999999999 9999999999998877899999998653 34468999999986531


Q ss_pred             h----------cc------------hhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         281 L----------LF------------ETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       281 l----------~~------------~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .          .+            ......++..+.++|+|||.+++...
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            1          01            12346789999999999999998654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.43  E-value=1e-12  Score=125.84  Aligned_cols=116  Identities=22%  Similarity=0.198  Sum_probs=94.0

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ......+...+...++.+|||+|||+|.++..+++....+|+|+|+|+ +++.|+++..  +.  .+++...|..++   
T Consensus       153 ~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---  225 (383)
T PRK11705        153 EAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---  225 (383)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---
Confidence            445566777778888899999999999999999985344999999999 9999988774  33  478888888665   


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .++||.|++..+++++. ...+..+++++.++|||||++++...+
T Consensus       226 ~~~fD~Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        226 NGQFDRIVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             CCCCCEEEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            36899999988776653 355678999999999999999987543

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.43  E-value=1.2e-12  Score=118.50  Aligned_cols=96  Identities=26%  Similarity=0.368  Sum_probs=78.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++..+++..++.+..++        .+||+|+++...
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~~  189 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANILA  189 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCcH
Confidence            45689999999999999998888877899999999 999999999988875455544332        279999987643


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                            ..+..++.++.++|||||+++++..
T Consensus       190 ------~~~~~l~~~~~~~LkpgG~lilsgi  214 (250)
T PRK00517        190 ------NPLLELAPDLARLLKPGGRLILSGI  214 (250)
T ss_pred             ------HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence                  3356788999999999999998743

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.43  E-value=7.9e-13  Score=114.68  Aligned_cols=147  Identities=17%  Similarity=0.094  Sum_probs=114.4

Q ss_pred             ChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHH
Q psy8709         160 GILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAY  237 (319)
Q Consensus       160 G~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~  237 (319)
                      +.+-+.+.+++.+.+..+.....+++.+.+.+.+.+.+. ...+.+|||++||+|.++..++.+|+.+|+++|.++ +++
T Consensus         7 ~~~rIi~G~~kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~   86 (189)
T TIGR00095         7 KKRIIIGGWRGGRLLKLPPGGSTRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQ   86 (189)
T ss_pred             ceEEEEehhhCCcccCCCCCCCCCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence            344455567777888877777788889999988888764 346789999999999999999999988999999999 999


Q ss_pred             HHHHHHHhcCCCCcEEEEEcCcccc-c-c--CCCceeEEEeccchhhhcchhhHHHHHHHH--hcccCCCcEEEeecCc
Q psy8709         238 ETIDIIRKNKYDSQIEVYHKLLEDV-E-L--PVESVDIIISEWMGYFLLFETMIDSVIDAR--NRFLKPDGVVCPNRFT  310 (319)
Q Consensus       238 ~a~~~~~~~g~~~~i~~i~~d~~~~-~-~--~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~--~r~LkpgG~li~~~~t  310 (319)
                      .++++++.++..++++++.+|+... . +  ....||+|+.++++..-    ....++..+  ..+|+++|.+++++..
T Consensus        87 ~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~----~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095        87 TLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNG----ALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             HHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCC----cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            9999999998877899999999553 1 1  12358999998886432    223333333  4589999999988754

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.2e-12  Score=119.17  Aligned_cols=116  Identities=22%  Similarity=0.234  Sum_probs=91.9

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      .+.+++.++...+.+|||+|||.|.++..+++. +..+++-+|.+. .++.+++++..|+.. +..++..|..+- .+ +
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~-v~-~  223 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEP-VE-G  223 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEeccccc-cc-c
Confidence            456677777777779999999999999999995 567999999999 999999999999884 336666666542 23 4


Q ss_pred             ceeEEEeccchhhhcc--hhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         268 SVDIIISEWMGYFLLF--ETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~--~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +||.|+||+++|--..  .....+++.+..+.|++||.|.+-.
T Consensus       224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa  266 (300)
T COG2813         224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA  266 (300)
T ss_pred             cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence            9999999999873211  1123489999999999999987543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.43  E-value=9.1e-13  Score=129.88  Aligned_cols=116  Identities=20%  Similarity=0.325  Sum_probs=92.8

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc--cccCC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED--VELPV  266 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~--~~~~~  266 (319)
                      ...+++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.+.+.   ++..++++++++|+..  .+++.
T Consensus        26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~  101 (475)
T PLN02336         26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISD  101 (475)
T ss_pred             hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCC
Confidence            3455666666667899999999999999999874 4999999999 98876542   2233689999999964  45667


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++||+|+++++.+++.. ..+..++.++.++|||||++++....
T Consensus       102 ~~fD~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~~  144 (475)
T PLN02336        102 GSVDLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRESC  144 (475)
T ss_pred             CCEEEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            89999999998887744 45789999999999999999886543

>KOG1271|consensus

Probab=99.43  E-value=5.2e-13  Score=112.02  Aligned_cols=127  Identities=15%  Similarity=0.222  Sum_probs=98.7

Q ss_pred             HHHHHHHHhcccc---cCCCc-ceeeccCCCchHHHHHHHcCCC-EEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709         186 TESYKSAILNNKS---LFNNK-HVIDVGAGTGILSIFAAQAGAA-KVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL  259 (319)
Q Consensus       186 ~~~~~~~i~~~l~---~~~~~-~VLDiGcGtG~ls~~la~~g~~-~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~  259 (319)
                      .+++.+++.+...   ..+.. +|||+|||+|.+...+++.|.. ..+|+|.|+ .++.|...++..++++.|+|.+.|+
T Consensus        48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI  127 (227)
T KOG1271|consen   48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI  127 (227)
T ss_pred             HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence            3555566655544   33434 9999999999999999998764 499999999 9999999999999988899999999


Q ss_pred             cccccCCCceeEEEeccchhhh-----cchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         260 EDVELPVESVDIIISEWMGYFL-----LFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       260 ~~~~~~~~~fD~Iis~~~~~~l-----~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      .+..+..++||+|+--..+..+     .....+...+..+.++|+|||+|++..|++-
T Consensus       128 ~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T  185 (227)
T KOG1271|consen  128 TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT  185 (227)
T ss_pred             cCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence            8876666889998854432211     1123345567888999999999999999874

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.43  E-value=1.9e-12  Score=116.62  Aligned_cols=123  Identities=20%  Similarity=0.168  Sum_probs=95.7

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      +.+..+.+.+++.+. ..+.+|||+|||+|.++..+++. +..+++|+|+++ +++.+++++..+++ .++.++.+|+.+
T Consensus        71 ~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~  148 (251)
T TIGR03534        71 PDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFE  148 (251)
T ss_pred             CChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhc
Confidence            445666666666554 23468999999999999999985 456999999999 99999999998888 479999999976


Q ss_pred             cccCCCceeEEEeccchhhhcc-----------------------hhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         262 VELPVESVDIIISEWMGYFLLF-----------------------ETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~-----------------------~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                       .++.++||+|++++++.....                       ......++..+.++|+|||.+++...
T Consensus       149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG  218 (251)
T ss_pred             -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence             345678999999987553110                       01134788999999999999998653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK05785 hypothetical protein; Provisional

Probab=99.42  E-value=8.6e-13  Score=117.67  Aligned_cols=90  Identities=21%  Similarity=0.200  Sum_probs=75.7

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY  279 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~  279 (319)
                      ++.+|||+|||||.++..+++....+|+|+|+|+ |++.|++.         ..++++|++++++++++||+|++....+
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~  121 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALH  121 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhh
Confidence            3579999999999999999887334999999999 99988753         1357899999999999999999987665


Q ss_pred             hhcchhhHHHHHHHHhcccCCCc
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDG  302 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG  302 (319)
                      ++   .+++.++++++|+|||.+
T Consensus       122 ~~---~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        122 AS---DNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             cc---CCHHHHHHHHHHHhcCce
Confidence            44   678899999999999953

>KOG4300|consensus

Probab=99.41  E-value=6.7e-13  Score=113.50  Aligned_cols=101  Identities=19%  Similarity=0.163  Sum_probs=85.7

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEE-EEEcCccccc-cCCCceeEEEeccchh
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIE-VYHKLLEDVE-LPVESVDIIISEWMGY  279 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~-~i~~d~~~~~-~~~~~fD~Iis~~~~~  279 (319)
                      ..||++|||||..-.+.--.+...|+++|+++ |-+.+.+.++++.. .++. |+.++.++++ +++.+||+|++.....
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC  156 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTLVLC  156 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence            47899999999887776655566999999999 99999998888855 5666 9999999997 7889999999876643


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .   .+++.+.|+++.|+|+|||++++-
T Consensus       157 S---ve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  157 S---VEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             c---cCCHHHHHHHHHHhcCCCcEEEEE
Confidence            3   377889999999999999999853

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.41  E-value=5.3e-13  Score=114.94  Aligned_cols=113  Identities=16%  Similarity=0.156  Sum_probs=94.9

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV  269 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f  269 (319)
                      .++..++..+..+|.|+|||+|..+..++++ +...++|+|-|+ |++.|.+.+      .+++|..+|+.+... ...+
T Consensus        21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p-~~~~   93 (257)
T COG4106          21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP-EQPT   93 (257)
T ss_pred             HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC-CCcc
Confidence            4555667777789999999999999999984 777999999999 999997654      688999999998764 4789


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                      |++++|.+++|+   .+...+|..+...|.|||.+.+.-..-+-.
T Consensus        94 dllfaNAvlqWl---pdH~~ll~rL~~~L~Pgg~LAVQmPdN~de  135 (257)
T COG4106          94 DLLFANAVLQWL---PDHPELLPRLVSQLAPGGVLAVQMPDNLDE  135 (257)
T ss_pred             chhhhhhhhhhc---cccHHHHHHHHHhhCCCceEEEECCCccCc
Confidence            999999999998   556678888999999999999776654433

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.41  E-value=2.9e-12  Score=122.36  Aligned_cols=124  Identities=21%  Similarity=0.118  Sum_probs=96.9

Q ss_pred             CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709         182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL  259 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~  259 (319)
                      .++.++.+.+.+++.+.  ++.+|||+|||+|.++..++.. +..+|+|+|+|+ +++.|+++++.++.  +++++++|+
T Consensus       234 PRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl  309 (423)
T PRK14966        234 PRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSW  309 (423)
T ss_pred             CCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence            46667888888877654  4468999999999999988874 566999999999 99999999988774  799999998


Q ss_pred             cccccC-CCceeEEEeccchhhhc----------------------chhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         260 EDVELP-VESVDIIISEWMGYFLL----------------------FETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       260 ~~~~~~-~~~fD~Iis~~~~~~l~----------------------~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .+...+ .++||+|+||+++....                      +...+..++..+.++|+|||.+++...
T Consensus       310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG  382 (423)
T PRK14966        310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG  382 (423)
T ss_pred             hccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            664332 35799999999753110                      011255788888899999999987654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.40  E-value=2.2e-12  Score=127.66  Aligned_cols=127  Identities=18%  Similarity=0.164  Sum_probs=97.9

Q ss_pred             CcccHHHHHHHHhcccc------------------------cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-H
Q psy8709         182 TPIRTESYKSAILNNKS------------------------LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-I  235 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~------------------------~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~  235 (319)
                      .++.++.+.+.+++.+.                        ..++.+|||+|||+|.++..++.. +..+|+|+|+|+ +
T Consensus        95 PRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~a  174 (506)
T PRK01544         95 PRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDA  174 (506)
T ss_pred             CCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHH
Confidence            56777888887765432                        113458999999999999988764 566999999999 9


Q ss_pred             HHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhc-----------ch------------hhHHHHHH
Q psy8709         236 AYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLL-----------FE------------TMIDSVID  292 (319)
Q Consensus       236 i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~-----------~~------------~~~~~~l~  292 (319)
                      ++.|++++..+++.+++.++.+|+.+. ++.++||+|+||+++....           ++            ..+..++.
T Consensus       175 l~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~  253 (506)
T PRK01544        175 IEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAE  253 (506)
T ss_pred             HHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHH
Confidence            999999999988877899999998642 3446899999998754211           00            22456788


Q ss_pred             HHhcccCCCcEEEeecC
Q psy8709         293 ARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       293 ~~~r~LkpgG~li~~~~  309 (319)
                      .+.++|+|||.+++...
T Consensus       254 ~a~~~L~~gG~l~lEig  270 (506)
T PRK01544        254 NAKQFLKPNGKIILEIG  270 (506)
T ss_pred             HHHHhccCCCEEEEEEC
Confidence            89999999999998643

>PRK14968 putative methyltransferase; Provisional

Probab=99.39  E-value=4.1e-12  Score=109.28  Aligned_cols=111  Identities=24%  Similarity=0.292  Sum_probs=87.7

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCc-EEEEEcCccccccCCCceeEEEecc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQ-IEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~-i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ..++.+|||+|||+|.++..+++.+ .+++|+|.|+ +++.+++++..++..++ +.++.+|+.+. ++..+||+|++++
T Consensus        21 ~~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~   98 (188)
T PRK14968         21 DKKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNP   98 (188)
T ss_pred             ccCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECC
Confidence            3566899999999999999999884 5999999999 99999999988877433 88999988764 3445899999987


Q ss_pred             chhhhc------------------chhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         277 MGYFLL------------------FETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       277 ~~~~l~------------------~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ++....                  ....+..+++++.++|+|||.+++...+.
T Consensus        99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~  151 (188)
T PRK14968         99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL  151 (188)
T ss_pred             CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence            653210                  12335678999999999999988765543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.39  E-value=3.2e-12  Score=124.37  Aligned_cols=120  Identities=16%  Similarity=0.092  Sum_probs=95.1

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCC
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVE  267 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~  267 (319)
                      .+...+...++.+|||+|||+|..+..+++.. ..+|+++|+++ ++..++++++.+|+  +++++.+|+.+..  ++.+
T Consensus       235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~  312 (427)
T PRK10901        235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQ  312 (427)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccC
Confidence            33445566788999999999999999998863 36999999999 99999999999887  3789999997653  2346


Q ss_pred             ceeEEEeccchhh------------hcchh-------hHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         268 SVDIIISEWMGYF------------LLFET-------MIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       268 ~fD~Iis~~~~~~------------l~~~~-------~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      +||.|+++++...            .....       ....++..+.++|||||.+++++|+++.
T Consensus       313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  377 (427)
T PRK10901        313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP  377 (427)
T ss_pred             CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            8999998876432            11111       2357899999999999999999998764

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.38  E-value=2.7e-12  Score=117.09  Aligned_cols=116  Identities=19%  Similarity=0.074  Sum_probs=93.7

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEE
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIII  273 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Ii  273 (319)
                      +...++.+|||+|||+|..+..+++. + ...|+++|+++ +++.++++++.+++ .+++++..|...+....++||.|+
T Consensus        67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl  145 (264)
T TIGR00446        67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAIL  145 (264)
T ss_pred             hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEE
Confidence            45567789999999999999998874 2 35899999999 99999999999988 579999999887654456799999


Q ss_pred             eccchhhh------------cchh-------hHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         274 SEWMGYFL------------LFET-------MIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       274 s~~~~~~l------------~~~~-------~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ++++....            ..+.       ....+|..+.++|||||+++.++|++..
T Consensus       146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            88764422            1111       2346899999999999999999999764

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.38  E-value=4.2e-12  Score=111.99  Aligned_cols=114  Identities=22%  Similarity=0.247  Sum_probs=91.2

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      +...++..+...++.+|||+|||+|.++..+++...  .+++++|+++ ++..++++..   ...+++++.+|+.+.+++
T Consensus        27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~  103 (223)
T TIGR01934        27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE  103 (223)
T ss_pred             HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC
Confidence            344455555555778999999999999999988644  4899999999 8888887765   335789999999988776


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .++||+|+++...++.   .++..+++++.+.|+|||.+++..
T Consensus       104 ~~~~D~i~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       104 DNSFDAVTIAFGLRNV---TDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             CCcEEEEEEeeeeCCc---ccHHHHHHHHHHHcCCCcEEEEEE
Confidence            6789999986654433   567889999999999999998644

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.38  E-value=4.6e-12  Score=111.87  Aligned_cols=107  Identities=15%  Similarity=0.065  Sum_probs=82.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc-----------CCCCcEEEEEcCccccccC-C
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN-----------KYDSQIEVYHKLLEDVELP-V  266 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~-----------g~~~~i~~i~~d~~~~~~~-~  266 (319)
                      .++.+|||+|||.|..+..++++|. +|+|+|+|+ +++.+.+.....           ....+++++++|+.+++.. .
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~  111 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL  111 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence            4567999999999999999999988 899999999 888754321100           0124789999999887642 3


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +.||.|+....++++ ..+....++..+.++|||||++++.+
T Consensus       112 ~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       112 GPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLIT  152 (213)
T ss_pred             CCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence            579999976665554 45677889999999999999765443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.37  E-value=2.4e-12  Score=117.36  Aligned_cols=110  Identities=15%  Similarity=0.167  Sum_probs=84.4

Q ss_pred             CCCcceeeccCCCch----HHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHh----cC-----------------
Q psy8709         200 FNNKHVIDVGAGTGI----LSIFAAQAG------AAKVFAIEKSD-IAYETIDIIRK----NK-----------------  247 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~----ls~~la~~g------~~~V~gvD~s~-~i~~a~~~~~~----~g-----------------  247 (319)
                      .++.+|+|+|||||.    +++.+++.+      ..+|+|+|+|+ |++.|++.+..    .+                 
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345799999999995    555565531      24899999999 99999874310    01                 


Q ss_pred             -----CCCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         248 -----YDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       248 -----~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                           +..+++|.++|+.+.+++.++||+|+|..+.+++. .+....+++++++.|+|||++++....
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG~L~lg~~E  244 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGGYLFLGHSE  244 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence                 12478999999998777678999999977776653 356778999999999999999976544

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.37  E-value=5.3e-12  Score=107.82  Aligned_cols=146  Identities=19%  Similarity=0.212  Sum_probs=118.9

Q ss_pred             HHhcCCceEEeeecCCCcccHHHHHHHHhccccc--CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHH
Q psy8709         166 AAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSL--FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDI  242 (319)
Q Consensus       166 aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~--~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~  242 (319)
                      .++++++.+-.++...++++++.+++.+++.+..  ..+.++||+-+|+|.++..++.+|+.+++.||.+. .....++|
T Consensus         6 ~G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N   85 (187)
T COG0742           6 GGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKEN   85 (187)
T ss_pred             eccccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHH
Confidence            4567778888888899999999999999999976  78899999999999999999999999999999999 99999999


Q ss_pred             HHhcCCCCcEEEEEcCcccc--ccCC-CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         243 IRKNKYDSQIEVYHKLLEDV--ELPV-ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       243 ~~~~g~~~~i~~i~~d~~~~--~~~~-~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ++..+...+++++..|+...  .... ++||+|+.+++++.-.......-..-.-..+|+|+|.+++.+..-
T Consensus        86 ~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742          86 LKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             HHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            99988878999999999844  2222 259999999997732121122222222568899999999887755

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.37  E-value=6.3e-12  Score=110.85  Aligned_cols=114  Identities=16%  Similarity=0.136  Sum_probs=90.3

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ....+...++..+...++.+|||+|||+|.++..+++.. .+|+++|.++ +++.++++++..++ .+++++.+|..+..
T Consensus        62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~  139 (212)
T PRK00312         62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKGW  139 (212)
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccCC
Confidence            345566677777778888999999999999999888874 4899999999 99999999998887 56999999986543


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .+.++||+|++......         +...+.+.|+|||.+++...
T Consensus       140 ~~~~~fD~I~~~~~~~~---------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        140 PAYAPFDRILVTAAAPE---------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CcCCCcCEEEEccCchh---------hhHHHHHhcCCCcEEEEEEc
Confidence            33478999998654322         23456789999999987654

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.37  E-value=5.9e-12  Score=117.26  Aligned_cols=117  Identities=13%  Similarity=0.079  Sum_probs=94.3

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      .+.+.+.....++.+|||+|||+|.++..+++. +..+++++|..++++.+++++...++.++++++.+|+.+.+++  .
T Consensus       138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~  215 (306)
T TIGR02716       138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--E  215 (306)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC--C
Confidence            445556666777789999999999999999885 5569999998559999999999999888999999999875555  3


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +|+|++..+.|.. ..+....+++++++.|+|||++++...
T Consensus       216 ~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       216 ADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             CCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            6998866555543 334567899999999999999987654

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.37  E-value=7.4e-12  Score=114.50  Aligned_cols=125  Identities=20%  Similarity=0.162  Sum_probs=97.1

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      ++.++.+.+.+.......++.+|||+|||+|.++..++.. +..+++|+|+++ +++.+++++. +....++.++.+|+.
T Consensus        90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~  168 (275)
T PRK09328         90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF  168 (275)
T ss_pred             CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence            4556777777776666667789999999999999999885 456999999999 9999999887 334468999999986


Q ss_pred             ccccCCCceeEEEeccchhhhc-----------------------chhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         261 DVELPVESVDIIISEWMGYFLL-----------------------FETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       261 ~~~~~~~~fD~Iis~~~~~~l~-----------------------~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +.. +.++||+|++++++....                       .......++.++.++|+|||.+++...
T Consensus       169 ~~~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g  239 (275)
T PRK09328        169 EPL-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG  239 (275)
T ss_pred             CcC-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            532 347899999998753210                       112356788889999999999998653

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.36  E-value=4.3e-12  Score=123.67  Aligned_cols=122  Identities=13%  Similarity=0.090  Sum_probs=97.0

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----  263 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----  263 (319)
                      ..+...+...++.+|||+|||+|..+..+++.  +.++|+++|+++ +++.++++++..|+ .+++++++|+.+..    
T Consensus       242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~  320 (434)
T PRK14901        242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKP  320 (434)
T ss_pred             HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccc
Confidence            33444466778899999999999999998884  345999999999 99999999999998 56999999998765    


Q ss_pred             cCCCceeEEEeccchhhhc----c--------hh-------hHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         264 LPVESVDIIISEWMGYFLL----F--------ET-------MIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~----~--------~~-------~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ...++||.|+++++.....    +        ..       ....++.++.++|||||+++.++|+++.
T Consensus       321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~  389 (434)
T PRK14901        321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP  389 (434)
T ss_pred             cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            3346899999876532210    0        11       1467899999999999999999999863

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.36  E-value=3e-12  Score=122.91  Aligned_cols=115  Identities=17%  Similarity=0.152  Sum_probs=92.7

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCccccc--c--CCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDVE--L--PVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~~--~--~~~~fD~Ii  273 (319)
                      .++++|||+|||+|.++..++..++.+|+++|+|+ +++.|++++..|++. ++++++++|+.+..  +  ..++||+|+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            35689999999999999887777777999999999 999999999999985 48999999997752  1  245899999


Q ss_pred             eccchhhhcc------hhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         274 SEWMGYFLLF------ETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       274 s~~~~~~l~~------~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                      ++++.+.-..      ...+..++..+.++|+|||.++..+|+-++.
T Consensus       299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~  345 (396)
T PRK15128        299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT  345 (396)
T ss_pred             ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC
Confidence            9998642211      1235566777889999999999988876543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.35  E-value=5e-12  Score=122.96  Aligned_cols=123  Identities=13%  Similarity=0.050  Sum_probs=94.7

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc--C
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL--P  265 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~--~  265 (319)
                      ...+...+...++.+|||+|||+|..+..+++. +.++|+|+|+++ +++.++++++..|+..++++..+|......  +
T Consensus       227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~  306 (426)
T TIGR00563       227 AQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE  306 (426)
T ss_pred             HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence            344455567778899999999999999999884 446999999999 999999999999885344557777665443  4


Q ss_pred             CCceeEEEeccchhhhc---c---------h-------hhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         266 VESVDIIISEWMGYFLL---F---------E-------TMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~---~---------~-------~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      .++||.|+++++.....   .         .       .....+|.++.++|||||.++.++||+.
T Consensus       307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            56899999875433211   0         0       1146789999999999999999999985

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.35  E-value=1.5e-11  Score=109.04  Aligned_cols=103  Identities=26%  Similarity=0.294  Sum_probs=85.5

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccchh
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMGY  279 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~  279 (319)
                      +.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++...+. .++++..+++.+.+.+ .++||+|++..+.+
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~  123 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE  123 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence            47999999999999998888765 799999999 99999988877665 3688999998776543 36899999876655


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +.   ..+..++.++.++|+|||.+++..+
T Consensus       124 ~~---~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       124 HV---PDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             hC---CCHHHHHHHHHHhcCCCcEEEEEec
Confidence            54   5677899999999999999998764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.35  E-value=6.3e-12  Score=119.28  Aligned_cols=111  Identities=17%  Similarity=0.186  Sum_probs=90.6

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEe
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIIS  274 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis  274 (319)
                      ...+..+||||||+|.++..+++. +...++|+|+++ ++..+.+++..+++ .++.++.+|+..+  .++.+++|.|++
T Consensus       120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~l  198 (390)
T PRK14121        120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFV  198 (390)
T ss_pred             CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEE
Confidence            344579999999999999999985 556999999999 99999999999888 6899999999764  466789999999


Q ss_pred             ccchhhhcchh---hHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         275 EWMGYFLLFET---MIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       275 ~~~~~~l~~~~---~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.+..|.....   ....++.++.|+|+|||.+.+.+-.
T Consensus       199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~  237 (390)
T PRK14121        199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS  237 (390)
T ss_pred             eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence            87665532211   1368899999999999999876543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.34  E-value=7.7e-12  Score=122.27  Aligned_cols=116  Identities=18%  Similarity=0.145  Sum_probs=93.0

Q ss_pred             cccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709         195 NNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI  271 (319)
Q Consensus       195 ~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~  271 (319)
                      ..+...++.+|||+|||+|..+..+++.  +..+|+++|+++ +++.++++++..|+ .+++++.+|+.... +.++||.
T Consensus       244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~-~~~~fD~  321 (445)
T PRK14904        244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFS-PEEQPDA  321 (445)
T ss_pred             HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccc-cCCCCCE
Confidence            3455667889999999999999888873  345999999999 99999999999988 57999999998765 4468999


Q ss_pred             EEeccchhhh------------cchh-------hHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         272 IISEWMGYFL------------LFET-------MIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       272 Iis~~~~~~l------------~~~~-------~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      |+++++....            ....       ....+|..+.++|||||++++++|++.
T Consensus       322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            9986543211            1111       234689999999999999999999985

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.34  E-value=6.6e-12  Score=110.23  Aligned_cols=98  Identities=9%  Similarity=0.126  Sum_probs=79.5

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      .++.+|||+|||+|.++..+++. +..+++|+|+|+ +++.|+++.      .++.++++|+.+ +++.++||+|+++.+
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~v  114 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKGV  114 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence            35578999999999999999885 556999999999 999887653      356788899887 677789999999988


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .+++. ...+..+++++.+++  ++++++.
T Consensus       115 L~hl~-p~~~~~~l~el~r~~--~~~v~i~  141 (204)
T TIGR03587       115 LIHIN-PDNLPTAYRELYRCS--NRYILIA  141 (204)
T ss_pred             hhhCC-HHHHHHHHHHHHhhc--CcEEEEE
Confidence            87764 467889999999997  4455543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.34  E-value=6.8e-12  Score=122.00  Aligned_cols=120  Identities=17%  Similarity=0.109  Sum_probs=96.0

Q ss_pred             HhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCc
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVES  268 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~  268 (319)
                      +...+...++.+|||+|||+|..+..++..  +..+|+++|+++ +++.++++++..|+ .+++++.+|+..++ ...++
T Consensus       229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~Da~~l~~~~~~~  307 (431)
T PRK14903        229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIADAERLTEYVQDT  307 (431)
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhhhhhhhhcc
Confidence            333456677889999999999999988884  346999999999 99999999999988 56999999998765 33468


Q ss_pred             eeEEEeccchhhhcc------------h-------hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         269 VDIIISEWMGYFLLF------------E-------TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       269 fD~Iis~~~~~~l~~------------~-------~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ||.|+++++...+..            .       ....++|.++.++|||||.+++++||+..
T Consensus       308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  371 (431)
T PRK14903        308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK  371 (431)
T ss_pred             CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence            999998776532211            0       12366799999999999999999999753

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.2e-11  Score=113.66  Aligned_cols=125  Identities=21%  Similarity=0.199  Sum_probs=96.3

Q ss_pred             CCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC
Q psy8709         181 GTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL  258 (319)
Q Consensus       181 ~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d  258 (319)
                      ..++.++.+.+.++........ +|||+|||+|.++..++.. +...|+|+|+|+ .++.|++|+..+++ .++.++.+|
T Consensus        91 iPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~d  168 (280)
T COG2890          91 IPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSD  168 (280)
T ss_pred             ecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeee
Confidence            3456677787776633333333 7999999999999999996 446999999999 99999999999998 677777777


Q ss_pred             ccccccCCCceeEEEeccchhhhc----------c------------hhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         259 LEDVELPVESVDIIISEWMGYFLL----------F------------ETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       259 ~~~~~~~~~~fD~Iis~~~~~~l~----------~------------~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ..+- .+ ++||+|+||+++---.          +            ......++..+.++|+|||.+++...
T Consensus       169 lf~~-~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g  239 (280)
T COG2890         169 LFEP-LR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG  239 (280)
T ss_pred             cccc-cC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence            6542 33 4899999999752211          1            12467889999999999999997765

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1e-11  Score=107.77  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=92.9

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ....+...+.+.+.+.++.+|||||||+|+.+..+++... +|+.+|..+ ..+.|+++++..|+ .|+.++++|...-.
T Consensus        56 s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~gDG~~G~  133 (209)
T COG2518          56 SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGY-ENVTVRHGDGSKGW  133 (209)
T ss_pred             cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCC-CceEEEECCcccCC
Confidence            3355677888889999999999999999999999999744 999999999 99999999999999 56999999998765


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .+..+||.|+......     ..+..+    .+.|||||++++-..
T Consensus       134 ~~~aPyD~I~Vtaaa~-----~vP~~L----l~QL~~gGrlv~PvG  170 (209)
T COG2518         134 PEEAPYDRIIVTAAAP-----EVPEAL----LDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCCcCEEEEeeccC-----CCCHHH----HHhcccCCEEEEEEc
Confidence            5558999999765432     222333    458999999986443

>PRK04266 fibrillarin; Provisional

Probab=99.32  E-value=1.6e-11  Score=109.42  Aligned_cols=103  Identities=19%  Similarity=0.232  Sum_probs=81.4

Q ss_pred             ccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc----ccCCCce
Q psy8709         196 NKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV----ELPVESV  269 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~----~~~~~~f  269 (319)
                      .++..++.+|||+|||+|.++..+++. +..+|+|+|+++ |++.+.++++..   .++.++.+|+.+.    .++ ++|
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~  142 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKV  142 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccC
Confidence            567788899999999999999999985 445899999999 999887776653   5789999998752    223 569


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      |+|+++...     ......++.++.++|||||.++++
T Consensus       143 D~i~~d~~~-----p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        143 DVIYQDVAQ-----PNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             CEEEECCCC-----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence            999975431     123345689999999999999984

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=1e-11  Score=121.37  Aligned_cols=120  Identities=16%  Similarity=0.119  Sum_probs=95.5

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCC
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPV  266 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~  266 (319)
                      .+...+...++.+|||+|||+|..+..+++.  +..+|+++|+++ +++.++++++.+|+ .+++++++|+.+..  ++ 
T Consensus       241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~-  318 (444)
T PRK14902        241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-TNIETKALDARKVHEKFA-  318 (444)
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCCcccccchhc-
Confidence            3344556677889999999999999998884  356999999999 99999999999998 45999999998753  33 


Q ss_pred             CceeEEEeccchhhhc------------chhh-------HHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         267 ESVDIIISEWMGYFLL------------FETM-------IDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~------------~~~~-------~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ++||+|+++++.....            .+..       ...++..+.++|||||.++.++|+++.
T Consensus       319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  384 (444)
T PRK14902        319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK  384 (444)
T ss_pred             ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence            6899999987643211            1111       246899999999999999999999853

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.32  E-value=1.9e-11  Score=110.76  Aligned_cols=124  Identities=16%  Similarity=0.040  Sum_probs=91.4

Q ss_pred             cccHHHHHHHHhccccc-CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709         183 PIRTESYKSAILNNKSL-FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL  259 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~  259 (319)
                      +..++.+.+.++..+.. ..+.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|+++++.++    ++++++|+
T Consensus        67 r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~  142 (251)
T TIGR03704        67 RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDL  142 (251)
T ss_pred             CccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence            34556777766655432 23458999999999999998874 445999999999 9999999998765    36888998


Q ss_pred             ccccc--CCCceeEEEeccchhhhc-----------c------------hhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         260 EDVEL--PVESVDIIISEWMGYFLL-----------F------------ETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       260 ~~~~~--~~~~fD~Iis~~~~~~l~-----------~------------~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .+...  ..++||+|++|+++.-..           +            ...+..++..+.++|+|||.+++.+..
T Consensus       143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~  218 (251)
T TIGR03704       143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE  218 (251)
T ss_pred             hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            65321  125799999999864210           0            112467888899999999999987643

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.32  E-value=6.5e-12  Score=129.05  Aligned_cols=113  Identities=18%  Similarity=0.111  Sum_probs=93.4

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCccccc-cCCCceeEEEeccc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDVE-LPVESVDIIISEWM  277 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~~-~~~~~fD~Iis~~~  277 (319)
                      ++++|||+|||+|.++..++..|+.+|+++|+|+ +++.|++++..|++. ++++++++|+.+.. ...++||+|+++++
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP  617 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP  617 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence            4689999999999999999998888999999999 999999999999985 58999999987642 11368999999987


Q ss_pred             hhhh--------cchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         278 GYFL--------LFETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       278 ~~~l--------~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      .+.-        ........++..+.++|+|||.++++++.-.+
T Consensus       618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~  661 (702)
T PRK11783        618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF  661 (702)
T ss_pred             CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC
Confidence            5421        11234677888899999999999998876543

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.31  E-value=1.8e-11  Score=109.36  Aligned_cols=113  Identities=24%  Similarity=0.241  Sum_probs=90.1

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCc
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVES  268 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~  268 (319)
                      +++...+...++.+|||+|||+|.++..+++.+. +++++|+++ ++..++++....+.  ++.++..++.+.+ .+.++
T Consensus        38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  114 (233)
T PRK05134         38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQ  114 (233)
T ss_pred             HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCC
Confidence            4444444556678999999999999999988764 899999999 99999888876665  5788888887664 23478


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ||+|++..+.++.   .....+++.+.++|+|||.+++...
T Consensus       115 fD~Ii~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        115 FDVVTCMEMLEHV---PDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             ccEEEEhhHhhcc---CCHHHHHHHHHHHcCCCcEEEEEec
Confidence            9999987655443   5667899999999999999998754

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.31  E-value=2.4e-11  Score=107.74  Aligned_cols=102  Identities=17%  Similarity=0.165  Sum_probs=81.3

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC--------------CCcEEEEEcCccccc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY--------------DSQIEVYHKLLEDVE  263 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~--------------~~~i~~i~~d~~~~~  263 (319)
                      ..++.+|||+|||.|..+..+++.|. +|+|+|+|+ .++.+..   ++++              ..++++.++|+.++.
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~  110 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT  110 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence            34567999999999999999999988 899999999 8877642   2222              257899999998875


Q ss_pred             cC-CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         264 LP-VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       264 ~~-~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      .. .+.||.|+...+++++ ..+....++..+.++|+|||+++
T Consensus       111 ~~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~  152 (218)
T PRK13255        111 AADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL  152 (218)
T ss_pred             cccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence            33 2589999987666655 45778899999999999998644

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.30  E-value=9.6e-12  Score=113.96  Aligned_cols=93  Identities=19%  Similarity=0.280  Sum_probs=74.1

Q ss_pred             CCcceeeccCCCchHHHHHHHc-C---CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-G---AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g---~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      +..+|||+|||+|.++..+++. +   ...++|+|+|+ +++.|.++.      .++.+..+|+.++++++++||+|++.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~  158 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI  158 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence            4468999999999999988764 2   23799999999 988886542      46889999999988888899999974


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ..          ...+.++.|+|||||++++...
T Consensus       159 ~~----------~~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        159 YA----------PCKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             cC----------CCCHHHHHhhccCCCEEEEEeC
Confidence            32          1235778999999999997544

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.30  E-value=1.5e-11  Score=104.70  Aligned_cols=111  Identities=18%  Similarity=0.186  Sum_probs=86.0

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV  269 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f  269 (319)
                      +.+++.+...++.+|||+|||+|.++..+++. ..+|+++|+++ +++.+++++..   .++++++++|+.+++++..+|
T Consensus         3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~   78 (169)
T smart00650        3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQP   78 (169)
T ss_pred             HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCC
Confidence            34555666677789999999999999999998 45999999999 99999887754   258999999999988776679


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      |.|++|.+++.  ..+.+..++...  .+.++|.+++..-
T Consensus        79 d~vi~n~Py~~--~~~~i~~~l~~~--~~~~~~~l~~q~e  114 (169)
T smart00650       79 YKVVGNLPYNI--STPILFKLLEEP--PAFRDAVLMVQKE  114 (169)
T ss_pred             CEEEECCCccc--HHHHHHHHHhcC--CCcceEEEEEEHH
Confidence            99999988763  234455555432  3558888886653

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.28  E-value=4.1e-11  Score=91.00  Aligned_cols=101  Identities=27%  Similarity=0.318  Sum_probs=82.5

Q ss_pred             ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc-CCCceeEEEeccchhhh
Q psy8709         204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL-PVESVDIIISEWMGYFL  281 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~-~~~~fD~Iis~~~~~~l  281 (319)
                      +++|+|||+|.++..+++.+..+++++|.++ .+..+.+.....+ ..++.++.+|+.+... +.++||+|+++.+.++.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            4899999999999999885567999999999 7777775443333 3689999999988764 45789999998876542


Q ss_pred             cchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         282 LFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       282 ~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                        ......+++.+.+.|+|||.+++.
T Consensus        80 --~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 --VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence              467889999999999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.28  E-value=2.2e-11  Score=107.13  Aligned_cols=116  Identities=20%  Similarity=0.195  Sum_probs=86.8

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      .....+...+++.+.+.++.+|||||||+|+.+..++.. + ..+|+++|..+ +++.|++++...+. .+++++.+|..
T Consensus        55 is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~  133 (209)
T PF01135_consen   55 ISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGS  133 (209)
T ss_dssp             E--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GG
T ss_pred             chHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchh
Confidence            344667778888888999999999999999999999985 3 34799999999 99999999999888 69999999987


Q ss_pred             ccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       261 ~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ....+..+||.|++.....     ..+.    .+.+.|++||++++-..
T Consensus       134 ~g~~~~apfD~I~v~~a~~-----~ip~----~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  134 EGWPEEAPFDRIIVTAAVP-----EIPE----ALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             GTTGGG-SEEEEEESSBBS-----S--H----HHHHTEEEEEEEEEEES
T ss_pred             hccccCCCcCEEEEeeccc-----hHHH----HHHHhcCCCcEEEEEEc
Confidence            6544457899999876432     2223    34568999999996433

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.27  E-value=3.8e-11  Score=106.74  Aligned_cols=102  Identities=19%  Similarity=0.162  Sum_probs=81.5

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|+++....+..+++.+..+|+..   ..++||+|++..+.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l  137 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVL  137 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchh
Confidence            4567999999999999999998865 799999999 999999998887776689999999543   34789999987665


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +++ .......+++.+.+.+++++.+.+
T Consensus       138 ~~~-~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        138 IHY-PQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             hcC-CHHHHHHHHHHHHhhcCCeEEEEE
Confidence            443 235677888888887766665543

>TIGR03438 probable methyltransferase

Probab=99.25  E-value=7.2e-11  Score=109.73  Aligned_cols=109  Identities=12%  Similarity=0.038  Sum_probs=81.5

Q ss_pred             CCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-ccCCC----ceeEE
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-ELPVE----SVDII  272 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~~~~~----~fD~I  272 (319)
                      ++.+|||+|||+|..+..+++..  ..+|+++|+|+ |++.+.+++.......++.++++|+.+. +++..    ...++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            45789999999999999998863  35899999999 9999998877643324678899999763 34322    23344


Q ss_pred             EeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++....+++ .......+|+++++.|+|||.|++..-.
T Consensus       143 ~~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d~  179 (301)
T TIGR03438       143 FPGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVDL  179 (301)
T ss_pred             EecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence            444444444 3566789999999999999999975543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK06202 hypothetical protein; Provisional

Probab=99.25  E-value=4.3e-11  Score=106.98  Aligned_cols=101  Identities=18%  Similarity=0.168  Sum_probs=76.7

Q ss_pred             CCCcceeeccCCCchHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA----G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Ii  273 (319)
                      .++.+|||+|||+|.++..+++.    | ..+|+|+|+|+ |++.|+++....    ++++...+...++.+.++||+|+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~  134 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVT  134 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEE
Confidence            45579999999999998888752    3 24899999999 999988765433    45666666666655667999999


Q ss_pred             eccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ++.++|++.. .....+++++.++++ + .+++.
T Consensus       135 ~~~~lhh~~d-~~~~~~l~~~~r~~~-~-~~~i~  165 (232)
T PRK06202        135 SNHFLHHLDD-AEVVRLLADSAALAR-R-LVLHN  165 (232)
T ss_pred             ECCeeecCCh-HHHHHHHHHHHHhcC-e-eEEEe
Confidence            9988887644 346789999999998 4 44443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.24  E-value=3.9e-11  Score=107.54  Aligned_cols=109  Identities=16%  Similarity=0.173  Sum_probs=88.0

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc------cCCC
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE------LPVE  267 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~------~~~~  267 (319)
                      ....++++|||+|||+|..+..++..  +.++|+++|+++ +++.|+++++.+|+.++++++.+|+.+.-      .+.+
T Consensus        64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~  143 (234)
T PLN02781         64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP  143 (234)
T ss_pred             HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence            34445689999999999988877773  456999999999 99999999999999889999999997641      1236


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +||+|+.+..      ...+..++..+.++|+|||+++++..-+
T Consensus       144 ~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~  181 (234)
T PLN02781        144 EFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLW  181 (234)
T ss_pred             CCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence            8999997643      2445678888899999999999876533

>KOG2904|consensus

Probab=99.23  E-value=8.8e-11  Score=104.60  Aligned_cols=128  Identities=20%  Similarity=0.215  Sum_probs=101.2

Q ss_pred             CcccHHHHHHHHhccccc---CCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEE
Q psy8709         182 TPIRTESYKSAILNNKSL---FNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYH  256 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~---~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~  256 (319)
                      .++.++++.+++...+..   .++..+||+|||+|..+..++. .+...|+++|.|+ ++..|.+|++.+++.+++.+++
T Consensus       126 PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~  205 (328)
T KOG2904|consen  126 PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH  205 (328)
T ss_pred             cCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence            578889999988877643   3445799999999999999888 4677999999999 9999999999999999999986


Q ss_pred             cCcccc-----ccCCCceeEEEeccchhhhc-----------------------chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         257 KLLEDV-----ELPVESVDIIISEWMGYFLL-----------------------FETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       257 ~d~~~~-----~~~~~~fD~Iis~~~~~~l~-----------------------~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      -+++.-     +...+++|+++||+++-.-.                       +-..+..++.-+.|.|+|||.+.++.
T Consensus       206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~  285 (328)
T KOG2904|consen  206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL  285 (328)
T ss_pred             cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence            654432     34568999999999853210                       11234566777789999999999876


Q ss_pred             C
Q psy8709         309 F  309 (319)
Q Consensus       309 ~  309 (319)
                      .
T Consensus       286 ~  286 (328)
T KOG2904|consen  286 V  286 (328)
T ss_pred             c
Confidence            5

>PHA03412 putative methyltransferase; Provisional

Probab=99.22  E-value=5.3e-11  Score=105.47  Aligned_cols=101  Identities=16%  Similarity=0.110  Sum_probs=78.9

Q ss_pred             CCcceeeccCCCchHHHHHHHc----CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA----GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~----g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      .+.+|||+|||+|.++..+++.    +..+|+++|+++ +++.|+++.      .++.++.+|+....+ .++||+||+|
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsN  121 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISN  121 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEEC
Confidence            3579999999999999988874    345899999999 888888664      357899999987654 3689999999


Q ss_pred             cchhhhcch---------hhHHHHHHHHhcccCCCcEEEeec
Q psy8709         276 WMGYFLLFE---------TMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       276 ~~~~~l~~~---------~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ++++-....         .....++..+.+++++|+.++|..
T Consensus       122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~  163 (241)
T PHA03412        122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM  163 (241)
T ss_pred             CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence            998743211         225568888889888888877654

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.22  E-value=1.1e-10  Score=109.09  Aligned_cols=111  Identities=18%  Similarity=0.098  Sum_probs=85.9

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ..+...+++.+...++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|+++++.++. ++++++.+|.....
T Consensus        66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~  144 (322)
T PRK13943         66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGV  144 (322)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcc
Confidence            344555666667778889999999999999999885 2 24799999999 99999999998887 68999999987655


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .+..+||+|++.....         .+...+.+.|+|||.+++.
T Consensus       145 ~~~~~fD~Ii~~~g~~---------~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        145 PEFAPYDVIFVTVGVD---------EVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             cccCCccEEEECCchH---------HhHHHHHHhcCCCCEEEEE
Confidence            4446899999764321         1223456789999998863

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.22  E-value=5.9e-11  Score=104.61  Aligned_cols=99  Identities=17%  Similarity=0.256  Sum_probs=75.7

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------cCCCc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--------LPVES  268 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------~~~~~  268 (319)
                      ..++.+|||+|||+|.++..+++. + ..+|+|+|++++          +.. .+++++++|+.+..        ++.++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~  117 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DPI-VGVDFLQGDFRDELVLKALLERVGDSK  117 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cCC-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence            456789999999999999998885 2 359999999983          122 46899999998853        45678


Q ss_pred             eeEEEeccchhhhcch--h------hHHHHHHHHhcccCCCcEEEeec
Q psy8709         269 VDIIISEWMGYFLLFE--T------MIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~--~------~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ||+|+|+...++....  +      ....++..+.++|+|||.|++..
T Consensus       118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~  165 (209)
T PRK11188        118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV  165 (209)
T ss_pred             CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999998754443211  0      13568999999999999999853

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.22  E-value=8e-11  Score=115.12  Aligned_cols=116  Identities=18%  Similarity=0.207  Sum_probs=93.0

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-  263 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-  263 (319)
                      ++.+.+.+++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+ +++.|+++++.+++ ++++++.+|+.+.. 
T Consensus       282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~  359 (443)
T PRK13168        282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFT  359 (443)
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhh
Confidence            47777888887777788899999999999999999875 5999999999 99999999999888 57999999987532 


Q ss_pred             ---cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 ---LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 ---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                         +..++||+|+++++...+      ...+..+.+ ++|++++++++..
T Consensus       360 ~~~~~~~~fD~Vi~dPPr~g~------~~~~~~l~~-~~~~~ivyvSCnp  402 (443)
T PRK13168        360 DQPWALGGFDKVLLDPPRAGA------AEVMQALAK-LGPKRIVYVSCNP  402 (443)
T ss_pred             hhhhhcCCCCEEEECcCCcCh------HHHHHHHHh-cCCCeEEEEEeCh
Confidence               334679999999885422      234444444 6899988887643

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.21  E-value=9.7e-11  Score=109.16  Aligned_cols=99  Identities=21%  Similarity=0.136  Sum_probs=75.3

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC----CCcEEEEEcCccccccCCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY----DSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~----~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.++++.+..+.    ..++.+..+|++++   .++||+|+|.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~  219 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL  219 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence            567999999999999999999865 999999999 99999998876421    24678888888654   3789999987


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      .+.+++.. +....+++.+.+ +.+||.++
T Consensus       220 ~vL~H~p~-~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        220 DVLIHYPQ-DKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             CEEEecCH-HHHHHHHHHHHh-hcCCEEEE
Confidence            76554433 344566776765 45666654

>KOG1501|consensus

Probab=99.21  E-value=3.8e-11  Score=112.75  Aligned_cols=149  Identities=29%  Similarity=0.369  Sum_probs=123.9

Q ss_pred             hhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCC
Q psy8709         123 HAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNN  202 (319)
Q Consensus       123 ~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~  202 (319)
                      +-+|+.|..|+..|..+|.....  +.++++|.|                                             .
T Consensus        35 y~DMl~D~dRNiky~~gi~~tIt--e~kh~~~~g---------------------------------------------k   67 (636)
T KOG1501|consen   35 YLDMLNDSDRNIKYRLGIEKTIT--EPKHVLDIG---------------------------------------------K   67 (636)
T ss_pred             HHHHhhcccccHHHHHHHHHHhc--ccceeccCc---------------------------------------------e
Confidence            45899999999999998876543  555666653                                             1


Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccchhh
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMGYF  280 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~~  280 (319)
                      ..|||+|.|||.+++.+++.|+..|++++.-. |.+.|++...++|+.++|+++.....++... ....|+++.....--
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE  147 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE  147 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence            47999999999999999999999999999999 9999999999999999999999887776533 345788887665555


Q ss_pred             hcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         281 LLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       281 l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                      +..+..++.+=.+..++++||-..+|.+.|.|+.++.+
T Consensus       148 ligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES  185 (636)
T KOG1501|consen  148 LIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVES  185 (636)
T ss_pred             hhccccchhHHHHHHHhcccCCeeccccceEEEEEehh
Confidence            66667778887778889999999999999999998864

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.20  E-value=9.3e-11  Score=101.52  Aligned_cols=104  Identities=20%  Similarity=0.312  Sum_probs=75.5

Q ss_pred             hcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------
Q psy8709         194 LNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--------  263 (319)
Q Consensus       194 ~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------  263 (319)
                      .......++.+|||+|||+|.++..+++.  +..+|+++|++++.          .. .+++++.+|+.+..        
T Consensus        25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~   93 (188)
T TIGR00438        25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRER   93 (188)
T ss_pred             HHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHH
Confidence            33345567889999999999999988874  34589999999921          12 46788888886642        


Q ss_pred             cCCCceeEEEeccchh----hhc----chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         264 LPVESVDIIISEWMGY----FLL----FETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~----~l~----~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .+.++||+|+++...+    +..    .......++..+.++|+|||++++..
T Consensus        94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            3456899999875321    111    11235788999999999999999854

>PRK04457 spermidine synthase; Provisional

Probab=99.19  E-value=1.1e-10  Score=106.49  Aligned_cols=110  Identities=16%  Similarity=0.191  Sum_probs=83.7

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEEEecc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDIIISEW  276 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~Iis~~  276 (319)
                      .++++|||+|||+|.++..+++. +..+++++|+++ +++.|++++...+..++++++.+|+.+.- ...++||+|+++.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            34578999999999999988874 567999999999 99999988766555578999999986642 2236899999874


Q ss_pred             chh-hhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         277 MGY-FLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       277 ~~~-~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ... .....-....+++.+.+.|+|||+++++..
T Consensus       145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~  178 (262)
T PRK04457        145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW  178 (262)
T ss_pred             CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence            211 111101236899999999999999998643

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=1.5e-10  Score=102.75  Aligned_cols=111  Identities=20%  Similarity=0.237  Sum_probs=96.8

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      .|...+.+.++.+|+|.|.|+|.++..+++.  +.++|+.+|+-+ .++.|++|++..++.+++++..+|+.+...+ +.
T Consensus        85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~  163 (256)
T COG2519          85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-ED  163 (256)
T ss_pred             HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-cc
Confidence            6677788999999999999999999999973  457999999999 9999999999999988899999999988776 49


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ||.|+.+.        .++..++..+++.|+|||.+++-.+++
T Consensus       164 vDav~LDm--------p~PW~~le~~~~~Lkpgg~~~~y~P~v  198 (256)
T COG2519         164 VDAVFLDL--------PDPWNVLEHVSDALKPGGVVVVYSPTV  198 (256)
T ss_pred             cCEEEEcC--------CChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence            99999665        456678899999999999998665553

>PRK00811 spermidine synthase; Provisional

Probab=99.19  E-value=1.2e-10  Score=107.38  Aligned_cols=112  Identities=18%  Similarity=0.122  Sum_probs=85.9

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc--CC--CCcEEEEEcCccccc-cCCCceeEEE
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN--KY--DSQIEVYHKLLEDVE-LPVESVDIII  273 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~--g~--~~~i~~i~~d~~~~~-~~~~~fD~Ii  273 (319)
                      ++++||++|||+|.++..+++. +..+|+++|+++ +++.|++.+...  +.  .++++++.+|+.... ...++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            4579999999999999999886 667999999999 999999887642  11  468999999987652 2357899999


Q ss_pred             eccchhhhcchh-hHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         274 SEWMGYFLLFET-MIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       274 s~~~~~~l~~~~-~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ++....+..... .-..+++.+.+.|+|||+++....+.+
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~  195 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF  195 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc
Confidence            975432211111 136788999999999999998765544

>PHA03411 putative methyltransferase; Provisional

Probab=99.17  E-value=1.4e-10  Score=104.97  Aligned_cols=100  Identities=19%  Similarity=0.163  Sum_probs=78.1

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      ...+|||+|||+|.++..++.. +..+|+|+|+++ +++.++++.      .+++++++|+.+... ..+||+|++|+++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF  136 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-NEKFDVVISNPPF  136 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-cCCCcEEEEcCCc
Confidence            3468999999999999888774 346999999999 988887653      368899999987654 3689999999998


Q ss_pred             hhhcchhh-----------------HHHHHHHHhcccCCCcEEEee
Q psy8709         279 YFLLFETM-----------------IDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       279 ~~l~~~~~-----------------~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +++...+.                 +..++.....+|+|+|.+++-
T Consensus       137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            76533211                 356778888999999977643

>KOG2899|consensus

Probab=99.17  E-value=5e-11  Score=104.42  Aligned_cols=154  Identities=15%  Similarity=0.244  Sum_probs=94.2

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccHHHHH-HHHhcccccCCCcceeeccCCCchHHHHHH
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRTESYK-SAILNNKSLFNNKHVIDVGAGTGILSIFAA  220 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~~~~~-~~i~~~l~~~~~~~VLDiGcGtG~ls~~la  220 (319)
                      ...+|+++.+||+||.+|.+++..+ .+|++.+.|+|+|+..+..++.. +.........++.-+...|.-.|.++.   
T Consensus        53 ~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~---  129 (288)
T KOG2899|consen   53 EKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ---  129 (288)
T ss_pred             cccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc---
Confidence            5679999999999999999999988 78999999999997655443221 111111111112222233333333332   


Q ss_pred             HcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhc---chhhHHHHHHHHhcc
Q psy8709         221 QAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLL---FETMIDSVIDARNRF  297 (319)
Q Consensus       221 ~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~---~~~~~~~~l~~~~r~  297 (319)
                      +.....-...|...       +.. + ...|..+...|+.+  +....||+|+|-.+..|++   +.+.+.++++.+.++
T Consensus       130 ~~~a~~a~t~~~p~-------n~~-f-~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~l  198 (288)
T KOG2899|consen  130 RNEADRAFTTDFPD-------NVW-F-QKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSL  198 (288)
T ss_pred             cccccccccccCCc-------chh-c-ccccEEEecchhhh--hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHh
Confidence            11111222222222       000 0 11345555555653  3346899999977666553   466789999999999


Q ss_pred             cCCCcEEEeecCc
Q psy8709         298 LKPDGVVCPNRFT  310 (319)
Q Consensus       298 LkpgG~li~~~~t  310 (319)
                      |.|||+|+++-..
T Consensus       199 l~pgGiLvvEPQp  211 (288)
T KOG2899|consen  199 LHPGGILVVEPQP  211 (288)
T ss_pred             hCcCcEEEEcCCc
Confidence            9999999976543

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.16  E-value=2.8e-10  Score=106.75  Aligned_cols=110  Identities=17%  Similarity=0.177  Sum_probs=82.6

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh---------cCCCCcEEEEEcCccccc----cCC
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK---------NKYDSQIEVYHKLLEDVE----LPV  266 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~---------~g~~~~i~~i~~d~~~~~----~~~  266 (319)
                      ++.+|||+|||.|.-.......+..+++|+|++. .++.|+++.+.         ....-...++.+|.....    ++.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            6689999999999988888888889999999999 99999988832         111235678888876432    232


Q ss_pred             --CceeEEEecc-chhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         267 --ESVDIIISEW-MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       267 --~~fD~Iis~~-~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                        .+||+|-|.. ++|.+..++....+|+.+...|+|||+|+.+++.
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence              5999999977 5555667788889999999999999999976654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PTZ00146 fibrillarin; Provisional

Probab=99.16  E-value=2.8e-10  Score=104.11  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=83.8

Q ss_pred             HHHHHHHhcc---cccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         187 ESYKSAILNN---KSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       187 ~~~~~~i~~~---l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      .++...++.-   +.+.++.+|||+|||+|.++..+++. + ...|+++|+++ +.+...+.++..   .++.++.+|+.
T Consensus       115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~  191 (293)
T PTZ00146        115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR  191 (293)
T ss_pred             cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc
Confidence            4555555333   45678889999999999999999985 3 45899999999 776666555432   57889999986


Q ss_pred             cc---ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         261 DV---ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       261 ~~---~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ..   ..+.++||+|+++...     ......++.++.++|||||.|++.
T Consensus       192 ~p~~y~~~~~~vDvV~~Dva~-----pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        192 YPQKYRMLVPMVDVIFADVAQ-----PDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             ChhhhhcccCCCCEEEEeCCC-----cchHHHHHHHHHHhccCCCEEEEE
Confidence            42   2234689999987641     234456677899999999999974

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.16  E-value=1.2e-10  Score=110.72  Aligned_cols=114  Identities=19%  Similarity=0.147  Sum_probs=97.5

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCccccc----cCCCceeEEEec
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDVE----LPVESVDIIISE  275 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~~----~~~~~fD~Iis~  275 (319)
                      |++|||+-|-||.++..++..|+++|++||.|. .++.|++|+..||+. .++.++++|+.++-    -...+||+||.+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD  297 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD  297 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence            799999999999999999999999999999999 999999999999984 56899999997752    223599999999


Q ss_pred             cchhhhc------chhhHHHHHHHHhcccCCCcEEEeecCcceeec
Q psy8709         276 WMGYFLL------FETMIDSVIDARNRFLKPDGVVCPNRFTLSLCG  315 (319)
Q Consensus       276 ~~~~~l~------~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~  315 (319)
                      ||.+.-.      -..++..++..+.++|+|||.+++++|+..+..
T Consensus       298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~  343 (393)
T COG1092         298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS  343 (393)
T ss_pred             CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH
Confidence            9865321      134577889999999999999999999877653

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.15  E-value=2.1e-10  Score=107.38  Aligned_cols=117  Identities=10%  Similarity=0.019  Sum_probs=87.2

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc-
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL-  264 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~-  264 (319)
                      +.+.+.+...+...++.+|||+|||+|.++..+++.+ .+|+|+|.++ +++.|+++++.+++ ++++++.+|+.++.. 
T Consensus       159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~  236 (315)
T PRK03522        159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATA  236 (315)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHh
Confidence            4455555555544456899999999999999999976 5999999999 99999999999998 689999999987542 


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ..++||+|+++++...+     ...++..+ .-++|++++++++...
T Consensus       237 ~~~~~D~Vv~dPPr~G~-----~~~~~~~l-~~~~~~~ivyvsc~p~  277 (315)
T PRK03522        237 QGEVPDLVLVNPPRRGI-----GKELCDYL-SQMAPRFILYSSCNAQ  277 (315)
T ss_pred             cCCCCeEEEECCCCCCc-----cHHHHHHH-HHcCCCeEEEEECCcc
Confidence            23579999999874322     12222222 2367888777666543

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=4e-10  Score=95.70  Aligned_cols=80  Identities=26%  Similarity=0.238  Sum_probs=70.0

Q ss_pred             ccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe
Q psy8709         196 NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS  274 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis  274 (319)
                      ......+++|+|+|||||.+++.++-.|+..|+|+|+++ +++.+++|..+  +..++.|+.+|+.++.   .++|.+++
T Consensus        40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtvim  114 (198)
T COG2263          40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTVIM  114 (198)
T ss_pred             HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC---CccceEEE
Confidence            445667789999999999999999999999999999999 99999999988  3368999999998876   56899999


Q ss_pred             ccchhh
Q psy8709         275 EWMGYF  280 (319)
Q Consensus       275 ~~~~~~  280 (319)
                      |+++-.
T Consensus       115 NPPFG~  120 (198)
T COG2263         115 NPPFGS  120 (198)
T ss_pred             CCCCcc
Confidence            997643

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.14  E-value=1.4e-10  Score=106.33  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=87.7

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCccccc---cCCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDVE---LPVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~~---~~~~~fD~Iis~  275 (319)
                      ++++|||+-|-||.++..++..|+.+|++||.|. +++.+++|+..|++. .+++++.+|+.+.-   -..++||+||++
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD  202 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD  202 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence            4689999999999999999999999999999999 999999999999985 68999999997642   124689999999


Q ss_pred             cchhhhc---chhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         276 WMGYFLL---FETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       276 ~~~~~l~---~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                      ++.+.-.   -..++..++..+.++|+|||.++..+|+..+.
T Consensus       203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~  244 (286)
T PF10672_consen  203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS  244 (286)
T ss_dssp             -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC
Confidence            8754211   13457788999999999999999999987654

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.12  E-value=4.7e-10  Score=104.11  Aligned_cols=121  Identities=18%  Similarity=0.159  Sum_probs=104.1

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEc-Ccccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHK-LLEDVEL  264 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~-d~~~~~~  264 (319)
                      ..+.+.+.+.....+|..|||.-||||.+.+.+.-.|. +++|.|++. |+.-|+.|++..++ ....+... |+.++++
T Consensus       183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i-~~~~~~~~~Da~~lpl  260 (347)
T COG1041         183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI-EDYPVLKVLDATNLPL  260 (347)
T ss_pred             HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc-CceeEEEecccccCCC
Confidence            77888899999999999999999999999999999987 999999999 99999999999887 45555555 9999999


Q ss_pred             CCCceeEEEeccchhhhc------chhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         265 PVESVDIIISEWMGYFLL------FETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~------~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +..++|.|++++++--..      -+..+..+|+.+.++|++||++++-..
T Consensus       261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            877899999998753221      135578899999999999999987665

>PLN02672 methionine S-methyltransferase

Probab=99.11  E-value=6.1e-10  Score=117.39  Aligned_cols=127  Identities=19%  Similarity=0.199  Sum_probs=93.4

Q ss_pred             cccHHHHHHHHhccccc--CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCC---------
Q psy8709         183 PIRTESYKSAILNNKSL--FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYD---------  249 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~--~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~---------  249 (319)
                      ++.++.+.+.+ ...+.  .++.+|||+|||+|.+++.++.. +..+|+|+|+|+ +++.|++|++.|++.         
T Consensus        99 RpeTE~lve~L-~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~  177 (1082)
T PLN02672         99 EDWSFTFYEGL-NRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG  177 (1082)
T ss_pred             chhHHHHHHHH-HhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence            35556666663 32221  13468999999999999999885 456999999999 999999999887542         


Q ss_pred             ------CcEEEEEcCccccccC-CCceeEEEeccchhhhc-----------ch------------------------hhH
Q psy8709         250 ------SQIEVYHKLLEDVELP-VESVDIIISEWMGYFLL-----------FE------------------------TMI  287 (319)
Q Consensus       250 ------~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~~l~-----------~~------------------------~~~  287 (319)
                            ++++++++|+.+.... ..+||+||||+++-.-.           ++                        ..+
T Consensus       178 ~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~y  257 (1082)
T PLN02672        178 EGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLI  257 (1082)
T ss_pred             ccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHH
Confidence                  4799999998764322 13699999999742100           00                        114


Q ss_pred             HHHHHHHhcccCCCcEEEeecCc
Q psy8709         288 DSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       288 ~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ..++.+..++|+|||.++++...
T Consensus       258 r~i~~~a~~~L~pgG~l~lEiG~  280 (1082)
T PLN02672        258 ARAVEEGISVIKPMGIMIFNMGG  280 (1082)
T ss_pred             HHHHHHHHHhccCCCEEEEEECc
Confidence            67788889999999999988754

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.10  E-value=5.9e-10  Score=97.75  Aligned_cols=115  Identities=21%  Similarity=0.203  Sum_probs=90.5

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----  263 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----  263 (319)
                      .+.......+.++|||||+++|+-++.+++. + .++|+.+|.++ ..+.|+++++..|+.++|+++.+|+.+.-     
T Consensus        36 lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~  115 (205)
T PF01596_consen   36 LLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN  115 (205)
T ss_dssp             HHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred             HHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence            3333334455689999999999999999984 2 46999999999 99999999999999899999999997641     


Q ss_pred             -cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         264 -LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       264 -~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                       .+.++||+|+.+..      .......+..+.++|+|||.++++..-+.
T Consensus       116 ~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~  159 (205)
T PF01596_consen  116 DGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWR  159 (205)
T ss_dssp             TTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred             ccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEcccccc
Confidence             11358999997653      24566778888899999999998876554

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02476 O-methyltransferase

Probab=99.09  E-value=7e-10  Score=101.23  Aligned_cols=114  Identities=15%  Similarity=0.155  Sum_probs=91.6

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--c-
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--L-  264 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~-  264 (319)
                      +.+.......+.++|||+|+|+|+.++.++..  ..++|+++|.++ ..+.|+++++..|+.++++++.+|+.+.-  + 
T Consensus       108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~  187 (278)
T PLN02476        108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI  187 (278)
T ss_pred             HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence            33334444555689999999999999999983  245899999999 99999999999999889999999987642  1 


Q ss_pred             ---CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         265 ---PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       265 ---~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                         ..++||+|+.+..      ......++..+.++|+|||.++++..-
T Consensus       188 ~~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL  230 (278)
T PLN02476        188 QNGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVL  230 (278)
T ss_pred             hcccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence               1358999997653      255678888889999999999987653

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=99.08  E-value=2.1e-10  Score=96.85  Aligned_cols=109  Identities=30%  Similarity=0.358  Sum_probs=89.2

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL  281 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l  281 (319)
                      ..+.|+|+|+|.++..++.. +.+|++++.+| ....|.+|++-+|. .+++++.+|+.+..+  +..|+|+|+..--.+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTaL  109 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTAL  109 (252)
T ss_pred             hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHHh
Confidence            57889999999999998887 67999999999 88889999887887 899999999999887  578999998654444


Q ss_pred             cchhhHHHHHHHHhcccCCCcEEEeecCcceeecc
Q psy8709         282 LFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGA  316 (319)
Q Consensus       282 ~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~  316 (319)
                      .. +....+++.+...|+.+|.++|.....-..|+
T Consensus       110 i~-E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv  143 (252)
T COG4076         110 IE-EKQVPVINAVLEFLRYDPTIIPQEVRIGANPV  143 (252)
T ss_pred             hc-ccccHHHHHHHHHhhcCCccccHHHhhccCcc
Confidence            44 34456778888899999999987665555443

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.07  E-value=2e-09  Score=92.60  Aligned_cols=124  Identities=20%  Similarity=0.183  Sum_probs=91.6

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCC--------EEEEEecHH-HHHHHHHHHHhcCCCCcEE
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAA--------KVFAIEKSD-IAYETIDIIRKNKYDSQIE  253 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~--------~V~gvD~s~-~i~~a~~~~~~~g~~~~i~  253 (319)
                      -.+.+...+++.....++..|||.-||+|.+.+..+..  ...        +++|.|+++ ++..+++|++..++...+.
T Consensus        12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~   91 (179)
T PF01170_consen   12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID   91 (179)
T ss_dssp             S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred             CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence            34677788888888888899999999999999888774  222        389999999 9999999999999988999


Q ss_pred             EEEcCccccccCCCceeEEEeccchhhhcc-----hhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         254 VYHKLLEDVELPVESVDIIISEWMGYFLLF-----ETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       254 ~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~-----~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +.+.|+.+++++.+++|.|++|+++..-..     +.....+++++.++|++...+++..
T Consensus        92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~  151 (179)
T PF01170_consen   92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS  151 (179)
T ss_dssp             EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred             EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence            999999999977789999999998653222     2335677899999999955555443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.07  E-value=4e-10  Score=98.02  Aligned_cols=90  Identities=18%  Similarity=0.246  Sum_probs=70.3

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc-c-ccCCCceeEEEeccc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED-V-ELPVESVDIIISEWM  277 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~-~-~~~~~~fD~Iis~~~  277 (319)
                      ++.+|||+|||+|.++..+++.....++|+|+++ +++.+.+        .+++++.+|+.+ + +++.++||+|+++.+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~   84 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFPDKSFDYVILSQT   84 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence            4579999999999999988876555889999999 8777653        246788888865 3 355678999999887


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCC
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPD  301 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~Lkpg  301 (319)
                      .+++   .++..+++++.+.++++
T Consensus        85 l~~~---~d~~~~l~e~~r~~~~~  105 (194)
T TIGR02081        85 LQAT---RNPEEILDEMLRVGRHA  105 (194)
T ss_pred             hHcC---cCHHHHHHHHHHhCCeE
Confidence            7665   55778888888877654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1975|consensus

Probab=99.07  E-value=4.9e-10  Score=101.95  Aligned_cols=124  Identities=16%  Similarity=0.110  Sum_probs=93.3

Q ss_pred             HHHHHHHhccc---ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcC-----CCCcEEEEEc
Q psy8709         187 ESYKSAILNNK---SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNK-----YDSQIEVYHK  257 (319)
Q Consensus       187 ~~~~~~i~~~l---~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g-----~~~~i~~i~~  257 (319)
                      .+++.||...+   -..++..++|+|||.|.-.+..-++|...++|+|+.+ .++.|+++.+.-.     +.-.+.|+.+
T Consensus       100 RnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~  179 (389)
T KOG1975|consen  100 RNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA  179 (389)
T ss_pred             hhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe
Confidence            34444444332   3456678999999999999999999999999999999 9999987765321     1125789999


Q ss_pred             Ccccc------ccCCCceeEEEeccchh-hhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         258 LLEDV------ELPVESVDIIISEWMGY-FLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       258 d~~~~------~~~~~~fD~Iis~~~~~-~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      |....      ++++.+||+|-|...+| .+..++....+|+++.+.|+|||+||-+.+.
T Consensus       180 Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  180 DCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD  239 (389)
T ss_pred             ccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence            87543      33445599999987554 4556777889999999999999999966554

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.06  E-value=8.3e-10  Score=107.62  Aligned_cols=115  Identities=19%  Similarity=0.172  Sum_probs=89.8

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-  263 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-  263 (319)
                      .+.+.+.+...+...++.+|||+|||+|.++..+++.. .+|+|+|+++ +++.|+++++.+++ .+++++.+|+.+.. 
T Consensus       277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~  354 (431)
T TIGR00479       277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLP  354 (431)
T ss_pred             HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHH
Confidence            35666677777777777899999999999999999874 5999999999 99999999999988 68999999997631 


Q ss_pred             ---cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         264 ---LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       264 ---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                         ....+||+|+.+++...     ....+++.+.+ ++|++.+++++
T Consensus       355 ~~~~~~~~~D~vi~dPPr~G-----~~~~~l~~l~~-l~~~~ivyvsc  396 (431)
T TIGR00479       355 KQPWAGQIPDVLLLDPPRKG-----CAAEVLRTIIE-LKPERIVYVSC  396 (431)
T ss_pred             HHHhcCCCCCEEEECcCCCC-----CCHHHHHHHHh-cCCCEEEEEcC
Confidence               22357999999887432     12445555443 78998887764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.05  E-value=1.6e-09  Score=92.64  Aligned_cols=110  Identities=30%  Similarity=0.390  Sum_probs=76.2

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcC--CCCcEEEEEcCccccc----cCCCce
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNK--YDSQIEVYHKLLEDVE----LPVESV  269 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g--~~~~i~~i~~d~~~~~----~~~~~f  269 (319)
                      ....++.+|||+|||+|..++.++.. +..+|+..|.++.++..+.+++.|+  ...++.+...+..+..    .+..+|
T Consensus        41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~  120 (173)
T PF10294_consen   41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF  120 (173)
T ss_dssp             GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred             hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence            34567789999999999999999997 7779999999998888899999887  5577888887764421    234689


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      |+|+..-+.|.   +...+.++..+.++|+|+|.+++...
T Consensus       121 D~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  121 DVILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             SEEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             CEEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            99997666553   47788899999999999999776554

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.05  E-value=9.9e-10  Score=105.11  Aligned_cols=115  Identities=7%  Similarity=-0.016  Sum_probs=86.8

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc-
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL-  264 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~-  264 (319)
                      +.+.+.+...+...++.+|||+|||+|.++..++..+ .+|+|+|+++ +++.|+++++.++. ++++++.+|+.+... 
T Consensus       219 ~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~  296 (374)
T TIGR02085       219 AQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATA  296 (374)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHh
Confidence            4444444444443456799999999999999999876 5999999999 99999999999988 589999999976532 


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ...+||+|+.+++...     ....++..+. .++|++++++++.
T Consensus       297 ~~~~~D~vi~DPPr~G-----~~~~~l~~l~-~~~p~~ivyvsc~  335 (374)
T TIGR02085       297 QMSAPELVLVNPPRRG-----IGKELCDYLS-QMAPKFILYSSCN  335 (374)
T ss_pred             cCCCCCEEEECCCCCC-----CcHHHHHHHH-hcCCCeEEEEEeC
Confidence            1246999999998532     2234444444 3789998888764

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.05  E-value=6.2e-10  Score=95.34  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=74.0

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEecc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIISEW  276 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis~~  276 (319)
                      .++.+|||+|||.|.+...+.+......+|+|+++ .+..+.    ++|    +.++++|+++-  .+++++||.||.+.
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~rG----v~Viq~Dld~gL~~f~d~sFD~VIlsq   83 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----ARG----VSVIQGDLDEGLADFPDQSFDYVILSQ   83 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----HcC----CCEEECCHHHhHhhCCCCCccEEehHh
Confidence            45689999999999999999885556999999999 555544    344    46899999764  47889999999766


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ....+   ..+..+|+++.|+   |...+++.++.
T Consensus        84 tLQ~~---~~P~~vL~EmlRV---gr~~IVsFPNF  112 (193)
T PF07021_consen   84 TLQAV---RRPDEVLEEMLRV---GRRAIVSFPNF  112 (193)
T ss_pred             HHHhH---hHHHHHHHHHHHh---cCeEEEEecCh
Confidence            65444   6678888888665   55566555443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG1541|consensus

Probab=99.05  E-value=7.7e-10  Score=95.80  Aligned_cols=115  Identities=13%  Similarity=0.124  Sum_probs=87.1

Q ss_pred             HHHHHHHhcccccC--CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc-ccc
Q psy8709         187 ESYKSAILNNKSLF--NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL-EDV  262 (319)
Q Consensus       187 ~~~~~~i~~~l~~~--~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~-~~~  262 (319)
                      .++.+..+..+.+.  +..-|||||||+|..+..+...|. ..+|+|+|+ |++.|.+.--+      -.++.+|+ +-+
T Consensus        34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~Gl  106 (270)
T KOG1541|consen   34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGEGL  106 (270)
T ss_pred             HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCC
Confidence            34444444444444  367899999999999999988885 999999999 99999863221      23566666 456


Q ss_pred             ccCCCceeEEEeccchhhhcc--------hhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         263 ELPVESVDIIISEWMGYFLLF--------ETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~--------~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +++.+.||.+|+-....|+.+        ...+..++..++.+|++|+..++..
T Consensus       107 pfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf  160 (270)
T KOG1541|consen  107 PFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF  160 (270)
T ss_pred             CCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence            788899999999777777643        2346778999999999999988764

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.04  E-value=1.8e-09  Score=96.98  Aligned_cols=112  Identities=21%  Similarity=0.293  Sum_probs=86.5

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC--
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP--  265 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~--  265 (319)
                      ..|+..+.+.+|.+|||.|.|+|.++..+++.  +.++|+..|..+ .++.|+++++.+|+.+++++.+.|+.+..++  
T Consensus        30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~  109 (247)
T PF08704_consen   30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE  109 (247)
T ss_dssp             HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred             HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence            46777889999999999999999999999984  567999999999 9999999999999988999999999754442  


Q ss_pred             -CCceeEEEeccchhhhcchhhHHHHHHHHhccc-CCCcEEEeecCc
Q psy8709         266 -VESVDIIISEWMGYFLLFETMIDSVIDARNRFL-KPDGVVCPNRFT  310 (319)
Q Consensus       266 -~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~L-kpgG~li~~~~t  310 (319)
                       ...+|.|+.+.+-.|        .++..+.+.| +|||+++.=.++
T Consensus       110 ~~~~~DavfLDlp~Pw--------~~i~~~~~~L~~~gG~i~~fsP~  148 (247)
T PF08704_consen  110 LESDFDAVFLDLPDPW--------EAIPHAKRALKKPGGRICCFSPC  148 (247)
T ss_dssp             -TTSEEEEEEESSSGG--------GGHHHHHHHE-EEEEEEEEEESS
T ss_pred             ccCcccEEEEeCCCHH--------HHHHHHHHHHhcCCceEEEECCC
Confidence             267999998765433        4566677889 899998854443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>KOG3010|consensus

Probab=99.04  E-value=2.2e-10  Score=100.55  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=72.5

Q ss_pred             ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhc
Q psy8709         204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLL  282 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~  282 (319)
                      .++|+|||+|..++.++.. ..+|+|+|+|+ |++.|.+.-.........++...+..++.-+++++|+|++....||+ 
T Consensus        36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-  113 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF-  113 (261)
T ss_pred             eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence            8999999999778888887 56999999999 99977754332222223334444444444447899999999988987 


Q ss_pred             chhhHHHHHHHHhcccCCCc-EEE
Q psy8709         283 FETMIDSVIDARNRFLKPDG-VVC  305 (319)
Q Consensus       283 ~~~~~~~~l~~~~r~LkpgG-~li  305 (319)
                         ++++++++++|+||++| .+.
T Consensus       114 ---dle~fy~~~~rvLRk~Gg~ia  134 (261)
T KOG3010|consen  114 ---DLERFYKEAYRVLRKDGGLIA  134 (261)
T ss_pred             ---chHHHHHHHHHHcCCCCCEEE
Confidence               66889999999999877 444

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.04  E-value=1.6e-09  Score=96.17  Aligned_cols=107  Identities=14%  Similarity=0.028  Sum_probs=84.0

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh-----------cCCCCcEEEEEcCccccccC--
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK-----------NKYDSQIEVYHKLLEDVELP--  265 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~-----------~g~~~~i~~i~~d~~~~~~~--  265 (319)
                      .++.+||+.|||.|.....+++.|. +|+|+|+|+ .++.+.+....           .....+++++++|+.+++.+  
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence            3567999999999999999999998 799999999 77776542100           00124799999999987532  


Q ss_pred             -CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         266 -VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       266 -~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                       .++||+|+-...+..+ +.++..+..+.+.++|+|||.++.-+
T Consensus       121 ~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        121 NLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             ccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence             2589999977666655 55788999999999999999987443

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.02  E-value=2.2e-09  Score=93.64  Aligned_cols=124  Identities=23%  Similarity=0.228  Sum_probs=85.6

Q ss_pred             ceEEeeecCCCcccHH--HHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcC
Q psy8709         172 AKVFAIEKSGTPIRTE--SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNK  247 (319)
Q Consensus       172 ~~V~avd~d~~~~~~~--~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g  247 (319)
                      .-.+-+|.....+...  .-+..+.+.  ..++.+|+|+.||.|.++..+++ ...+.|+++|++| .++.++++++.|+
T Consensus        72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk  149 (200)
T PF02475_consen   72 GIRFKVDLSKVYFSPRLSTERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK  149 (200)
T ss_dssp             TEEEEEETTTS---GGGHHHHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             CEEEEEccceEEEccccHHHHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC
Confidence            3456677776666653  334445444  56688999999999999999998 3456899999999 9999999999999


Q ss_pred             CCCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         248 YDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       248 ~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      +.+++..+++|..++.. ...||.|+++.+...       ..+|..+.+++++||++-
T Consensus       150 v~~~i~~~~~D~~~~~~-~~~~drvim~lp~~~-------~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  150 VENRIEVINGDAREFLP-EGKFDRVIMNLPESS-------LEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             -TTTEEEEES-GGG----TT-EEEEEE--TSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred             CCCeEEEEcCCHHHhcC-ccccCEEEECChHHH-------HHHHHHHHHHhcCCcEEE
Confidence            99899999999988765 589999998776432       245666778899999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.02  E-value=1.8e-09  Score=95.05  Aligned_cols=116  Identities=17%  Similarity=0.242  Sum_probs=92.9

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEE-cCccccc--c
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYH-KLLEDVE--L  264 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~-~d~~~~~--~  264 (319)
                      +.+...+...+.++|||+|.+.|+-++.++.. + ..+++++|.++ +++.|++++++.|+.++++++. +|..+.-  .
T Consensus        49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~  128 (219)
T COG4122          49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL  128 (219)
T ss_pred             HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence            33444444456789999999999999999984 4 57999999999 9999999999999988899999 5775542  2


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ..++||+|+...      .....+.++..+.++|+|||+++.+..-..
T Consensus       129 ~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~  170 (219)
T COG4122         129 LDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFG  170 (219)
T ss_pred             cCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence            358999999653      235567889999999999999998765443

>PLN02366 spermidine synthase

Probab=99.01  E-value=2.1e-09  Score=99.93  Aligned_cols=114  Identities=19%  Similarity=0.195  Sum_probs=86.0

Q ss_pred             CCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhc--CC-CCcEEEEEcCccccc--cCCCceeEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKN--KY-DSQIEVYHKLLEDVE--LPVESVDII  272 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~--g~-~~~i~~i~~d~~~~~--~~~~~fD~I  272 (319)
                      .+.++||++|||+|.++..+++.+ ..+|+.+|+++ +++.+++.+...  ++ .++++++.+|+...-  .+.++||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            456899999999999999999874 57999999999 999999877542  22 368999999986542  234689999


Q ss_pred             Eeccchhhhcch-hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         273 ISEWMGYFLLFE-TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       273 is~~~~~~l~~~-~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      +++......... -.-..+++.+.+.|+|||+++....+.+.
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~  211 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL  211 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence            997643221110 01357889999999999999987666554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.01  E-value=8.9e-11  Score=102.11  Aligned_cols=112  Identities=17%  Similarity=0.245  Sum_probs=81.9

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPV  266 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~  266 (319)
                      .+.++......+-.++||+|||||..+..+... ..+++|+|+|. |+++|.++    +..+  ++.+++...+.  ...
T Consensus       114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~  186 (287)
T COG4976         114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQ  186 (287)
T ss_pred             HHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccC
Confidence            333444444444579999999999999988887 45999999999 99888753    2212  23334443221  345


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ++||+|++.-+..++   ..++.++..+...|+|||.|.||.-+.
T Consensus       187 er~DLi~AaDVl~Yl---G~Le~~~~~aa~~L~~gGlfaFSvE~l  228 (287)
T COG4976         187 ERFDLIVAADVLPYL---GALEGLFAGAAGLLAPGGLFAFSVETL  228 (287)
T ss_pred             CcccchhhhhHHHhh---cchhhHHHHHHHhcCCCceEEEEeccc
Confidence            789999976665555   788999999999999999999987664

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.00  E-value=2.1e-09  Score=93.73  Aligned_cols=105  Identities=17%  Similarity=0.219  Sum_probs=81.3

Q ss_pred             cceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc---ccCCCceeEEEeccc
Q psy8709         203 KHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV---ELPVESVDIIISEWM  277 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~---~~~~~~fD~Iis~~~  277 (319)
                      ..+||||||.|.+...+|. .+...++|+|+.. .+..+.+.+...++ .|+.++++|+..+   -++.+++|.|+.+.+
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            3899999999999999888 4777999999999 99999988888888 8999999999874   245589999998877


Q ss_pred             hhhhcchh-----hHHHHHHHHhcccCCCcEEEeec
Q psy8709         278 GYFLLFET-----MIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       278 ~~~l~~~~-----~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      -.|.-...     .-..++..+.++|+|||.+.+.+
T Consensus        98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen   98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence            66653222     24678999999999999998765

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00417 speE spermidine synthase

Probab=98.97  E-value=2.8e-09  Score=97.61  Aligned_cols=114  Identities=16%  Similarity=0.157  Sum_probs=83.9

Q ss_pred             CCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcC--C-CCcEEEEEcCcccc-ccCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNK--Y-DSQIEVYHKLLEDV-ELPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g--~-~~~i~~i~~d~~~~-~~~~~~fD~Ii  273 (319)
                      .++++||++|||+|.++..+++.+ ..+++++|+++ +++.+++.+...+  + .++++++.+|..+. ....++||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            344699999999999999888864 67999999999 9999998765432  1 25788888887653 22246899999


Q ss_pred             eccchhhhcchh-hHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         274 SEWMGYFLLFET-MIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       274 s~~~~~~l~~~~-~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ++.....-.... ....+++.+.+.|+|||++++...+.+.
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~  191 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWI  191 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCccc
Confidence            876532211111 1367889999999999999988665443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK03612 spermidine synthase; Provisional

Probab=98.97  E-value=1.5e-09  Score=108.14  Aligned_cols=114  Identities=15%  Similarity=0.102  Sum_probs=84.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHH--HHh---cCC-CCcEEEEEcCccccc-cCCCcee
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGA-AKVFAIEKSD-IAYETIDI--IRK---NKY-DSQIEVYHKLLEDVE-LPVESVD  270 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s~-~i~~a~~~--~~~---~g~-~~~i~~i~~d~~~~~-~~~~~fD  270 (319)
                      .++++|||+|||+|..+..+++.+. .+|+++|+++ +++.++++  +..   ..+ .++++++.+|..+.. ...++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            4567999999999999999998754 7999999999 99999883  221   122 258999999988742 2346899


Q ss_pred             EEEeccchhhhcch--hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         271 IIISEWMGYFLLFE--TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       271 ~Iis~~~~~~l~~~--~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      +|+++.+.......  -.-.++++.+.+.|+|||.++++..+.+.
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~  420 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF  420 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCccc
Confidence            99998654321110  11246888999999999999998765543

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.96  E-value=2.3e-09  Score=99.12  Aligned_cols=92  Identities=22%  Similarity=0.249  Sum_probs=78.7

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ...+.+.+...+...++.+|||||||+|.++..+++.+ .+|+++|+++ +++.+++++...+..++++++.+|+.+..+
T Consensus        21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~   99 (294)
T PTZ00338         21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF   99 (294)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence            35677777777788888999999999999999999875 4899999999 999999998877755789999999987665


Q ss_pred             CCCceeEEEeccchhh
Q psy8709         265 PVESVDIIISEWMGYF  280 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~  280 (319)
                      +  .||.|++|.+++.
T Consensus       100 ~--~~d~VvaNlPY~I  113 (294)
T PTZ00338        100 P--YFDVCVANVPYQI  113 (294)
T ss_pred             c--ccCEEEecCCccc
Confidence            3  6899999988764

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.95  E-value=3e-09  Score=96.72  Aligned_cols=89  Identities=21%  Similarity=0.237  Sum_probs=75.3

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ...+.+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.+++++..   .++++++++|+.++++
T Consensus        14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~   89 (258)
T PRK14896         14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDL   89 (258)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCc
Confidence            35667777777777888999999999999999999985 4999999999 99999887754   2589999999988776


Q ss_pred             CCCceeEEEeccchhh
Q psy8709         265 PVESVDIIISEWMGYF  280 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~  280 (319)
                      +  .||.|++|.+++.
T Consensus        90 ~--~~d~Vv~NlPy~i  103 (258)
T PRK14896         90 P--EFNKVVSNLPYQI  103 (258)
T ss_pred             h--hceEEEEcCCccc
Confidence            5  5899999998664

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.93  E-value=4.5e-09  Score=93.13  Aligned_cols=107  Identities=18%  Similarity=0.178  Sum_probs=81.2

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh--c-----C----CCCcEEEEEcCcccccc
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK--N-----K----YDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~--~-----g----~~~~i~~i~~d~~~~~~  264 (319)
                      +...++.+||..|||.|.-...+++.|. +|+|+|+|+ .++.+.+....  .     +    ...+|++.++|+.+++.
T Consensus        33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~  111 (218)
T PF05724_consen   33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP  111 (218)
T ss_dssp             HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence            3455667999999999999999999988 999999999 77776432211  0     0    12478999999988764


Q ss_pred             CC-CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         265 PV-ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       265 ~~-~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      .. ++||+|+-...+..+ +.++.....+.+.++|+|||.++
T Consensus       112 ~~~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~l  152 (218)
T PF05724_consen  112 EDVGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGL  152 (218)
T ss_dssp             SCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEE
T ss_pred             hhcCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEE
Confidence            42 479999977666554 55788999999999999999944

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.93  E-value=2.8e-09  Score=89.97  Aligned_cols=79  Identities=14%  Similarity=-0.014  Sum_probs=65.0

Q ss_pred             EEEecHH-HHHHHHHHHHhc--CCCCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEE
Q psy8709         228 FAIEKSD-IAYETIDIIRKN--KYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV  304 (319)
Q Consensus       228 ~gvD~s~-~i~~a~~~~~~~--g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~l  304 (319)
                      +|+|+|+ |++.|+++.+..  +...+++++++|++++++++++||+|++....+++   .+...++++++|+|||||.+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l   77 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRV   77 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEE
Confidence            4899999 999998766532  22357999999999999888899999987666555   57789999999999999999


Q ss_pred             EeecC
Q psy8709         305 CPNRF  309 (319)
Q Consensus       305 i~~~~  309 (319)
                      ++...
T Consensus        78 ~i~d~   82 (160)
T PLN02232         78 SILDF   82 (160)
T ss_pred             EEEEC
Confidence            86544

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.92  E-value=2.9e-09  Score=97.63  Aligned_cols=88  Identities=17%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+++.+...++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.+++++..    ++++++++|+.+++++
T Consensus        28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~  102 (272)
T PRK00274         28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS  102 (272)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH
Confidence            45666777777777888999999999999999999865 999999999 99998876632    5899999999988765


Q ss_pred             CCceeEEEeccchh
Q psy8709         266 VESVDIIISEWMGY  279 (319)
Q Consensus       266 ~~~fD~Iis~~~~~  279 (319)
                      .-.++.|++|.+++
T Consensus       103 ~~~~~~vv~NlPY~  116 (272)
T PRK00274        103 ELQPLKVVANLPYN  116 (272)
T ss_pred             HcCcceEEEeCCcc
Confidence            32269999998864

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.92  E-value=2.5e-09  Score=93.33  Aligned_cols=103  Identities=20%  Similarity=0.215  Sum_probs=77.1

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF  280 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~  280 (319)
                      ..+.||.|||.|+.+..+.-.-+.+|..+|+.+ .++.|++.+.... ....++.+..++++..+..+||+|++.|...+
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh  134 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH  134 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence            368999999999999877665578999999999 9999987765522 24567888888888766679999999998877


Q ss_pred             hcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         281 LLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       281 l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      |.. .++-.+|+.+...|+|||++++
T Consensus       135 LTD-~dlv~fL~RCk~~L~~~G~Ivv  159 (218)
T PF05891_consen  135 LTD-EDLVAFLKRCKQALKPNGVIVV  159 (218)
T ss_dssp             S-H-HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCH-HHHHHHHHHHHHhCcCCcEEEE
Confidence            654 7788999999999999999985

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK01581 speE spermidine synthase; Validated

Probab=98.92  E-value=4.7e-09  Score=98.64  Aligned_cols=114  Identities=15%  Similarity=0.195  Sum_probs=83.0

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHH--H---HhcCC-CCcEEEEEcCcccc-ccCCCce
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDI--I---RKNKY-DSQIEVYHKLLEDV-ELPVESV  269 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~--~---~~~g~-~~~i~~i~~d~~~~-~~~~~~f  269 (319)
                      ....++||++|||+|..+..+.+.+ ..+|+++|+++ +++.|++.  +   ....+ .++++++.+|+.++ ....++|
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            3445799999999999999888864 57999999999 99999862  1   11122 47999999999875 2334689


Q ss_pred             eEEEeccchhhhc--chhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         270 DIIISEWMGYFLL--FETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       270 D~Iis~~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      |+|+++.+.....  ..-.-..+++.+++.|+|||+++....+.+
T Consensus       228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~  272 (374)
T PRK01581        228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA  272 (374)
T ss_pred             cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence            9999986421110  111125688999999999999987765443

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.90  E-value=9.3e-09  Score=92.62  Aligned_cols=109  Identities=17%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--c-C----C
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--L-P----V  266 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~-~----~  266 (319)
                      +...+.++|||+|+++|+-+..+++.  ..++++++|.++ ..+.|+++++..|+.++|+++.|++.+.-  + +    .
T Consensus        75 ~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~  154 (247)
T PLN02589         75 LKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH  154 (247)
T ss_pred             HHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence            34444589999999999999999884  346999999999 99999999999999999999999987652  1 1    2


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ++||+|+.+.-      .......+..+.++|+|||+++++..-+
T Consensus       155 ~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~  193 (247)
T PLN02589        155 GTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_pred             CcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence            68999997643      2445677788889999999999876543

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.89  E-value=1.4e-09  Score=95.05  Aligned_cols=109  Identities=22%  Similarity=0.198  Sum_probs=89.0

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC-CCcEEEEEcCcccc--ccCCCceeEE
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY-DSQIEVYHKLLEDV--ELPVESVDII  272 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~-~~~i~~i~~d~~~~--~~~~~~fD~I  272 (319)
                      .....+.+|||.+.|-|+.++.++++|+.+|+.++.++ .++.|.-|--..++ ...++++.||+.+.  .+++++||+|
T Consensus       130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI  209 (287)
T COG2521         130 VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI  209 (287)
T ss_pred             eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence            44567899999999999999999999999999999999 77766543222222 24689999999876  4778899999


Q ss_pred             EeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      |-+++-+.+..+-.-..+.++++|+|||||.++
T Consensus       210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlF  242 (287)
T COG2521         210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLF  242 (287)
T ss_pred             eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence            999987666565556788999999999999998

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.87  E-value=1.1e-08  Score=97.93  Aligned_cols=116  Identities=17%  Similarity=0.161  Sum_probs=86.9

Q ss_pred             HHHHHHHhcccccC-CCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKSLF-NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~-~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ..+...+.+.+... ++.+|||++||+|.+++.++. .+..+|+++|+++ .++.+++|++.|++ ++++++++|+..+.
T Consensus        42 rdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l  120 (382)
T PRK04338         42 RDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANALL  120 (382)
T ss_pred             hhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHHHH
Confidence            44444444433322 246899999999999999877 4666999999999 99999999999998 56789999987643


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ...++||+|+.++++       ....++..+.+.+++||+++++...
T Consensus       121 ~~~~~fD~V~lDP~G-------s~~~~l~~al~~~~~~gilyvSAtD  160 (382)
T PRK04338        121 HEERKFDVVDIDPFG-------SPAPFLDSAIRSVKRGGLLCVTATD  160 (382)
T ss_pred             hhcCCCCEEEECCCC-------CcHHHHHHHHHHhcCCCEEEEEecC
Confidence            213679999998752       2245666666778999999988443

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.85  E-value=2e-08  Score=98.34  Aligned_cols=114  Identities=18%  Similarity=0.064  Sum_probs=90.6

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEEE
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDIII  273 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~Ii  273 (319)
                      ...++.+|||++||.|.-+..++..  +.+.++++|+++ .++..+++++..|+ .++.+.+.|...+. ...+.||.|+
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~IL  188 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAIL  188 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEE
Confidence            5567889999999999999998884  345899999999 99999999999998 67889999987653 2236799999


Q ss_pred             eccchhh----hcch---------------hhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         274 SEWMGYF----LLFE---------------TMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       274 s~~~~~~----l~~~---------------~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      .+.+...    -.+.               .....+|..+.++|||||+|+.++||+.
T Consensus       189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~  246 (470)
T PRK11933        189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN  246 (470)
T ss_pred             EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence            7654331    1111               1136789999999999999999999975

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.84  E-value=2e-08  Score=90.22  Aligned_cols=108  Identities=18%  Similarity=0.211  Sum_probs=84.6

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV  269 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f  269 (319)
                      ..+.......+..+|+|||+|+|.++..+++ .+..+++..|....++.+.+       .++++++.+|+. -++|.  +
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P~--~  159 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLPV--A  159 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCSS--E
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhcc--c
Confidence            3445555666667999999999999999888 46679999999777777766       479999999998 56664  9


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCC--cEEEeecC
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPD--GVVCPNRF  309 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~Lkpg--G~li~~~~  309 (319)
                      |+++...+.|.+. ++....+|+++++.|+||  |++++...
T Consensus       160 D~~~l~~vLh~~~-d~~~~~iL~~~~~al~pg~~g~llI~e~  200 (241)
T PF00891_consen  160 DVYLLRHVLHDWS-DEDCVKILRNAAAALKPGKDGRLLIIEM  200 (241)
T ss_dssp             SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred             cceeeehhhhhcc-hHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence            9999888877654 467789999999999999  99986554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.82  E-value=2.9e-08  Score=92.56  Aligned_cols=80  Identities=15%  Similarity=0.079  Sum_probs=62.6

Q ss_pred             CCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhc-CCCCcEEEEE-cCccccc----cCCCceeEE
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKN-KYDSQIEVYH-KLLEDVE----LPVESVDII  272 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~-g~~~~i~~i~-~d~~~~~----~~~~~fD~I  272 (319)
                      ++.++||||||+|.+...++. ....+++|+|+++ +++.|++++..| ++.++++++. .+..++.    .+.+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            457999999999977666554 4445999999999 999999999999 7888898864 3333221    235689999


Q ss_pred             Eeccchhh
Q psy8709         273 ISEWMGYF  280 (319)
Q Consensus       273 is~~~~~~  280 (319)
                      +||+++|-
T Consensus       194 vcNPPf~~  201 (321)
T PRK11727        194 LCNPPFHA  201 (321)
T ss_pred             EeCCCCcC
Confidence            99999774

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.82  E-value=2e-08  Score=89.26  Aligned_cols=105  Identities=18%  Similarity=0.188  Sum_probs=87.2

Q ss_pred             cceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---cCCCceeEEEeccc
Q psy8709         203 KHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---LPVESVDIIISEWM  277 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---~~~~~fD~Iis~~~  277 (319)
                      ..+||||||.|.+...+|+ .+...++|||+.. .+..|.+.+.+.++ +|+.++++|+..+.   .+.++.|-|..+.+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l-~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL-KNLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            4799999999999999998 4677999999999 99999999999998 49999999998762   34459999998877


Q ss_pred             hhhhcchh-----hHHHHHHHHhcccCCCcEEEeec
Q psy8709         278 GYFLLFET-----MIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       278 ~~~l~~~~-----~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      -.|.-...     ....++..+.+.|+|||.|.+.+
T Consensus       129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence            66542211     24678999999999999998765

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.81  E-value=6.4e-08  Score=91.20  Aligned_cols=130  Identities=18%  Similarity=0.054  Sum_probs=105.0

Q ss_pred             CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCC---------------------------------C---
Q psy8709         182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA---------------------------------A---  225 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~---------------------------------~---  225 (319)
                      ..+-.+.+...++......++..++|.-||+|.+.+.++-.+.                                 .   
T Consensus       172 ~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~  251 (381)
T COG0116         172 PAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG  251 (381)
T ss_pred             CCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence            4455688999999999999889999999999999998887542                                 1   


Q ss_pred             ----EEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhcchh-----hHHHHHHHHh
Q psy8709         226 ----KVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFET-----MIDSVIDARN  295 (319)
Q Consensus       226 ----~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~-----~~~~~l~~~~  295 (319)
                          .++|+|+++ +++.|+.|++..|+.+.|+|.++|+..+..+.+.+|+||||+++-.-....     ....+.+.++
T Consensus       252 ~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk  331 (381)
T COG0116         252 KELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLK  331 (381)
T ss_pred             CccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHH
Confidence                378999999 999999999999999999999999998876557899999999865322222     3445666777


Q ss_pred             cccCCCcEEEeecCcc
Q psy8709         296 RFLKPDGVVCPNRFTL  311 (319)
Q Consensus       296 r~LkpgG~li~~~~t~  311 (319)
                      +.++--+.+++++...
T Consensus       332 ~~~~~ws~~v~tt~e~  347 (381)
T COG0116         332 RLLAGWSRYVFTTSED  347 (381)
T ss_pred             HHhcCCceEEEEccHH
Confidence            8888878888776543

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.80  E-value=2.2e-08  Score=93.52  Aligned_cols=130  Identities=21%  Similarity=0.200  Sum_probs=99.5

Q ss_pred             eEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCc
Q psy8709         173 KVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQ  251 (319)
Q Consensus       173 ~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~  251 (319)
                      -.+.+|+....+......+...-.-....|.+|+|.-||-|.+++.+++.|...|+++|++| .++.+.+|++.|++.+.
T Consensus       160 ~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~  239 (341)
T COG2520         160 CRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGR  239 (341)
T ss_pred             EEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccce
Confidence            45566666665555333333322222334899999999999999999999887799999999 99999999999999888


Q ss_pred             EEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         252 IEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       252 i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +..+.||..++....+.+|-|+++.+.       .-..++..+.+.+++||++.+...
T Consensus       240 v~~i~gD~rev~~~~~~aDrIim~~p~-------~a~~fl~~A~~~~k~~g~iHyy~~  290 (341)
T COG2520         240 VEPILGDAREVAPELGVADRIIMGLPK-------SAHEFLPLALELLKDGGIIHYYEF  290 (341)
T ss_pred             eeEEeccHHHhhhccccCCEEEeCCCC-------cchhhHHHHHHHhhcCcEEEEEec
Confidence            999999999887555789999976553       234566667778888998875543

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.80  E-value=2.3e-08  Score=95.31  Aligned_cols=114  Identities=12%  Similarity=0.090  Sum_probs=84.7

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-  263 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-  263 (319)
                      .+.+.+.+.+.+... +.+|||++||+|.++..+++. +.+|+|+|.++ +++.+++++..+++ ++++++.+|+.+.. 
T Consensus       192 ~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~  268 (362)
T PRK05031        192 NEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQ  268 (362)
T ss_pred             HHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHH
Confidence            466666666655432 257999999999999988876 46999999999 99999999999998 58999999997641 


Q ss_pred             -cC--------------CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 -LP--------------VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 -~~--------------~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                       +.              ..+||+|+.+++..     .....++..+.+   |++++++++..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~-----G~~~~~l~~l~~---~~~ivyvSC~p  322 (362)
T PRK05031        269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPRA-----GLDDETLKLVQA---YERILYISCNP  322 (362)
T ss_pred             HHhhcccccccccccccCCCCCEEEECCCCC-----CCcHHHHHHHHc---cCCEEEEEeCH
Confidence             10              12589999999842     223445555443   67777776543

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.79  E-value=5.3e-08  Score=88.26  Aligned_cols=88  Identities=23%  Similarity=0.261  Sum_probs=73.1

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ...+.+.+++.+...++.+|||+|||+|.++..+++.+. .|+++|+++ +++.++++...   ..+++++++|+.+.++
T Consensus        14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~   89 (253)
T TIGR00755        14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL   89 (253)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh
Confidence            356677788777777889999999999999999999864 799999999 99888876643   3689999999988776


Q ss_pred             CCCcee---EEEeccchh
Q psy8709         265 PVESVD---IIISEWMGY  279 (319)
Q Consensus       265 ~~~~fD---~Iis~~~~~  279 (319)
                      +  .+|   .|++|.+++
T Consensus        90 ~--~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        90 P--DFPKQLKVVSNLPYN  105 (253)
T ss_pred             h--HcCCcceEEEcCChh
Confidence            4  566   999998865

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.78  E-value=3.3e-08  Score=93.91  Aligned_cols=113  Identities=11%  Similarity=0.009  Sum_probs=83.9

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      +.+.+.+.+.+...+ .+|||+|||+|.++..+++.. .+|+|+|.++ +++.|+++++.+++ ++++++.+|+.+....
T Consensus       184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~~~~~~~  260 (353)
T TIGR02143       184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEFTQA  260 (353)
T ss_pred             HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCHHHHHHH
Confidence            566666666554333 469999999999999888864 5999999999 99999999999998 5799999999764211


Q ss_pred             ----------C------CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         266 ----------V------ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       266 ----------~------~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                                .      ..||+|+.+++-.     .....++..+.+   |++++|+++..
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~-----G~~~~~l~~l~~---~~~ivYvsC~p  313 (353)
T TIGR02143       261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRA-----GLDPDTCKLVQA---YERILYISCNP  313 (353)
T ss_pred             HhhccccccccccccccCCCCEEEECCCCC-----CCcHHHHHHHHc---CCcEEEEEcCH
Confidence                      0      1389999999842     223445555443   78888877643

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG2361|consensus

Probab=98.70  E-value=2e-08  Score=88.35  Aligned_cols=103  Identities=22%  Similarity=0.214  Sum_probs=74.9

Q ss_pred             ceeeccCCCchHHHHHHHc-CC--CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc----ccCCCceeEEEec
Q psy8709         204 HVIDVGAGTGILSIFAAQA-GA--AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV----ELPVESVDIIISE  275 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~~-g~--~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~----~~~~~~fD~Iis~  275 (319)
                      +||++|||.|.....+.+. +.  -.|+++|.|+ +++..+++..-..  .++.....|+...    +.+.+++|+|++.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence            8999999999999998884 22  4899999999 6665554433222  3455555555432    3446899999976


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .++..+.. +....++.+++++|||||.+++...
T Consensus       152 FvLSAi~p-ek~~~a~~nl~~llKPGG~llfrDY  184 (264)
T KOG2361|consen  152 FVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDY  184 (264)
T ss_pred             EEEeccCh-HHHHHHHHHHHHHhCCCcEEEEeec
Confidence            66555444 5568899999999999999997643

>KOG3191|consensus

Probab=98.69  E-value=1e-07  Score=80.45  Aligned_cols=106  Identities=22%  Similarity=0.238  Sum_probs=84.5

Q ss_pred             CcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         202 NKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      ...++|||||+|..+.++++.  +...+.++|+++ +++...+.++.|+.  ++..+..|+...-.+ +++|+++.|+++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~-~~VDvLvfNPPY  120 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRN-ESVDVLVFNPPY  120 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhcc-CCccEEEECCCc
Confidence            478999999999999999984  566899999999 88888888888876  688888888765444 899999999875


Q ss_pred             hhhc------------------chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         279 YFLL------------------FETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       279 ~~l~------------------~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ---.                  +.+..++++.++..+|.|.|.++.-.+.
T Consensus       121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~  170 (209)
T KOG3191|consen  121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR  170 (209)
T ss_pred             CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence            2111                  1223678889999999999999976544

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.69  E-value=1.2e-07  Score=78.91  Aligned_cols=116  Identities=14%  Similarity=0.094  Sum_probs=89.9

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL  259 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~  259 (319)
                      -+++....+.+.+.+....+..|||+|.|||.++..+.++|  ...++++|.|+ ......+..      +.+.+++||+
T Consensus        30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda  103 (194)
T COG3963          30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDA  103 (194)
T ss_pred             cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccch
Confidence            34456667777888888888999999999999999999975  45899999999 665554432      4667999999


Q ss_pred             cccc-----cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         260 EDVE-----LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       260 ~~~~-----~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      .++.     .....||.|||..+.-.+. .....++++.+...|.+||.++
T Consensus       104 ~~l~~~l~e~~gq~~D~viS~lPll~~P-~~~~iaile~~~~rl~~gg~lv  153 (194)
T COG3963         104 FDLRTTLGEHKGQFFDSVISGLPLLNFP-MHRRIAILESLLYRLPAGGPLV  153 (194)
T ss_pred             hhHHHHHhhcCCCeeeeEEeccccccCc-HHHHHHHHHHHHHhcCCCCeEE
Confidence            8774     4457899999976543332 2345678888899999999988

>KOG0820|consensus

Probab=98.68  E-value=7.5e-08  Score=86.04  Aligned_cols=90  Identities=24%  Similarity=0.300  Sum_probs=78.3

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.|....+..++..|||+|.|||.++..+.+.|. +|+++|+++ |+....++.+......+.+++.||+...++|
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P  122 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP  122 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence            45667777788888999999999999999999999966 999999999 9999998887766668999999999887765


Q ss_pred             CCceeEEEeccchh
Q psy8709         266 VESVDIIISEWMGY  279 (319)
Q Consensus       266 ~~~fD~Iis~~~~~  279 (319)
                        .||.+|+|.++.
T Consensus       123 --~fd~cVsNlPyq  134 (315)
T KOG0820|consen  123 --RFDGCVSNLPYQ  134 (315)
T ss_pred             --ccceeeccCCcc
Confidence              799999987653

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=6.8e-08  Score=93.68  Aligned_cols=120  Identities=18%  Similarity=0.143  Sum_probs=95.8

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      +...+.+..++.+.++..++.++||+-||.|.++..+++. ..+|+|+|+++ +++.|+++++.|+. +|++|+.+++++
T Consensus       275 ~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i-~N~~f~~~~ae~  352 (432)
T COG2265         275 PAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGI-DNVEFIAGDAEE  352 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEeCCHHH
Confidence            3345888889999999888899999999999999999976 45999999999 99999999999999 559999999998


Q ss_pred             cccC---CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         262 VELP---VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       262 ~~~~---~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +...   ...+|.|+.+++--.+     -+.+++.+. .++|..++++|+..
T Consensus       353 ~~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~-~~~p~~IvYVSCNP  398 (432)
T COG2265         353 FTPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLA-KLKPKRIVYVSCNP  398 (432)
T ss_pred             HhhhccccCCCCEEEECCCCCCC-----CHHHHHHHH-hcCCCcEEEEeCCH
Confidence            7533   2478999999875433     124444444 45677777776543

>KOG3420|consensus

Probab=98.67  E-value=5.1e-08  Score=79.27  Aligned_cols=89  Identities=19%  Similarity=0.116  Sum_probs=75.3

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      +...+-+-.....|++++|+|||.|-++..++..+...|+|+|+.+ .++.+.+|+....+  ++.++++|+.+..+..+
T Consensus        36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g  113 (185)
T KOG3420|consen   36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGG  113 (185)
T ss_pred             HHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCC
Confidence            3444445566678899999999999999888887888999999999 99999999888766  67899999999887778


Q ss_pred             ceeEEEeccchh
Q psy8709         268 SVDIIISEWMGY  279 (319)
Q Consensus       268 ~fD~Iis~~~~~  279 (319)
                      .||..+.|+++.
T Consensus       114 ~fDtaviNppFG  125 (185)
T KOG3420|consen  114 IFDTAVINPPFG  125 (185)
T ss_pred             eEeeEEecCCCC
Confidence            999999998753

>KOG2940|consensus

Probab=98.64  E-value=3.3e-08  Score=86.22  Aligned_cols=98  Identities=19%  Similarity=0.239  Sum_probs=84.3

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL  281 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l  281 (319)
                      ..++|+|||-|.+...+...+..+++-+|.|. |++.++.. +.+++  ......+|-+.+++.+.++|+|++....||.
T Consensus        74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslHW~  150 (325)
T KOG2940|consen   74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLHWT  150 (325)
T ss_pred             cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhhhh
Confidence            57999999999999999998889999999999 99887643 22332  5667888998889989999999999988887


Q ss_pred             cchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         282 LFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       282 ~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                         .+++..+.+++..|||+|.|+-
T Consensus       151 ---NdLPg~m~~ck~~lKPDg~Fia  172 (325)
T KOG2940|consen  151 ---NDLPGSMIQCKLALKPDGLFIA  172 (325)
T ss_pred             ---ccCchHHHHHHHhcCCCccchh
Confidence               6678889999999999999883

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.62  E-value=6.4e-08  Score=83.88  Aligned_cols=103  Identities=20%  Similarity=0.159  Sum_probs=63.8

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPV  266 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~  266 (319)
                      +.+.+++..   ..++..|.|+|||.+.++..+. .+. .|...|+-+               .+-.++.+|+.++|+++
T Consensus        61 d~iI~~l~~---~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva---------------~n~~Vtacdia~vPL~~  120 (219)
T PF05148_consen   61 DVIIEWLKK---RPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA---------------PNPRVTACDIANVPLED  120 (219)
T ss_dssp             HHHHHHHCT---S-TTS-EEEES-TT-HHHHH---S----EEEEESS----------------SSTTEEES-TTS-S--T
T ss_pred             HHHHHHHHh---cCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC---------------CCCCEEEecCccCcCCC
Confidence            444445442   3345699999999999985543 222 799999987               22246789999999999


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      +++|++|+.....   + .++..++.+++|+|||||.|.+...+-.+
T Consensus       121 ~svDv~VfcLSLM---G-Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf  163 (219)
T PF05148_consen  121 ESVDVAVFCLSLM---G-TNWPDFIREANRVLKPGGILKIAEVKSRF  163 (219)
T ss_dssp             T-EEEEEEES------S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG-
T ss_pred             CceeEEEEEhhhh---C-CCcHHHHHHHHheeccCcEEEEEEecccC
Confidence            9999999765422   2 57789999999999999999987655443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.62  E-value=4.7e-07  Score=78.05  Aligned_cols=97  Identities=23%  Similarity=0.308  Sum_probs=79.0

Q ss_pred             ceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709         204 HVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL  281 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l  281 (319)
                      +++|+|+|.|.-++.++- .+..+++.+|... -+...+......++ +|++++++++++ .....+||+|++-.+    
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~-~~~~~~fd~v~aRAv----  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE-PEYRESFDVVTARAV----  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc-cccCCCccEEEeehh----
Confidence            799999999999988887 4667999999999 88888888888888 689999999998 444589999998766    


Q ss_pred             cchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         282 LFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       282 ~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                         ..+..++.-+..+|++||.+++-..
T Consensus       125 ---~~l~~l~~~~~~~l~~~G~~l~~KG  149 (184)
T PF02527_consen  125 ---APLDKLLELARPLLKPGGRLLAYKG  149 (184)
T ss_dssp             ---SSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             ---cCHHHHHHHHHHhcCCCCEEEEEcC
Confidence               4567888889999999999886443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.61  E-value=1.1e-07  Score=84.75  Aligned_cols=96  Identities=22%  Similarity=0.320  Sum_probs=60.3

Q ss_pred             HHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEE-EEEcCcc-----ccc
Q psy8709         192 AILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIE-VYHKLLE-----DVE  263 (319)
Q Consensus       192 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~-~i~~d~~-----~~~  263 (319)
                      .++.... ..++.+|||+|||||.++..+++.|+.+|+|+|+++ ++...   ++.+   .++. +...++.     ++.
T Consensus        65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~---~~v~~~~~~ni~~~~~~~~~  138 (228)
T TIGR00478        65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQD---ERVKVLERTNIRYVTPADIF  138 (228)
T ss_pred             HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcC---CCeeEeecCCcccCCHhHcC
Confidence            3333333 356789999999999999999999888999999999 76551   2221   1221 2222333     222


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      .....+|+++...           ..++..+.+.|+| |.++
T Consensus       139 ~d~~~~DvsfiS~-----------~~~l~~i~~~l~~-~~~~  168 (228)
T TIGR00478       139 PDFATFDVSFISL-----------ISILPELDLLLNP-NDLT  168 (228)
T ss_pred             CCceeeeEEEeeh-----------HhHHHHHHHHhCc-CeEE
Confidence            1223677666422           2246677778888 7665

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PLN02823 spermine synthase

Probab=98.60  E-value=2.1e-07  Score=87.55  Aligned_cols=110  Identities=17%  Similarity=0.128  Sum_probs=81.2

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcC---CCCcEEEEEcCccccc-cCCCceeEEEe
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNK---YDSQIEVYHKLLEDVE-LPVESVDIIIS  274 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g---~~~~i~~i~~d~~~~~-~~~~~fD~Iis  274 (319)
                      ..++||.+|+|.|..+..+.+. +..+|+.+|+++ +++.+++.+..++   ..++++++.+|....- ...++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            4578999999999999998885 567999999999 9999998875432   1478999999987752 33468999998


Q ss_pred             ccchhhhcch--h-hHHHHHH-HHhcccCCCcEEEeecCc
Q psy8709         275 EWMGYFLLFE--T-MIDSVID-ARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       275 ~~~~~~l~~~--~-~~~~~l~-~~~r~LkpgG~li~~~~t  310 (319)
                      +..-..-...  . .-..+++ .+.+.|+|||+++.+..+
T Consensus       183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s  222 (336)
T PLN02823        183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP  222 (336)
T ss_pred             cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence            7431110000  0 1235676 789999999999877543

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=1.9e-07  Score=84.16  Aligned_cols=90  Identities=16%  Similarity=0.164  Sum_probs=76.1

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+.......++..|||||+|.|.+|..+++.+. +|+++|+++ ++...++...   ..++++++++|+....++
T Consensus        16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcch
Confidence            55677888888888889999999999999999999966 899999999 8877776654   237899999999998887


Q ss_pred             CC-ceeEEEeccchhh
Q psy8709         266 VE-SVDIIISEWMGYF  280 (319)
Q Consensus       266 ~~-~fD~Iis~~~~~~  280 (319)
                      .- .++.|++|.+++.
T Consensus        92 ~l~~~~~vVaNlPY~I  107 (259)
T COG0030          92 SLAQPYKVVANLPYNI  107 (259)
T ss_pred             hhcCCCEEEEcCCCcc
Confidence            32 6899999988663

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.58  E-value=3.2e-07  Score=79.73  Aligned_cols=102  Identities=20%  Similarity=0.203  Sum_probs=76.9

Q ss_pred             ceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC--------CCceeEEE
Q psy8709         204 HVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP--------VESVDIII  273 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~--------~~~fD~Ii  273 (319)
                      +|||||||||-.+..+++. +.-.-.-.|.++ ........+...++.+-..-+..|+...+.+        .++||.|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            5999999999999999884 556777888888 6566666777766643333445565544222        35899999


Q ss_pred             eccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      |..+.|.. ..+....+++.+.++|+|||.|++
T Consensus       108 ~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~  139 (204)
T PF06080_consen  108 CINMLHIS-PWSAVEGLFAGAARLLKPGGLLFL  139 (204)
T ss_pred             ehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEE
Confidence            98888764 446678999999999999999984

The function of this family is unknown.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.56  E-value=5.8e-07  Score=78.32  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=68.7

Q ss_pred             CCcceeeccCCCc----hHHHHHHHc---CC---CEEEEEecHH-HHHHHHHHH--------------Hh-----cC---
Q psy8709         201 NNKHVIDVGAGTG----ILSIFAAQA---GA---AKVFAIEKSD-IAYETIDII--------------RK-----NK---  247 (319)
Q Consensus       201 ~~~~VLDiGcGtG----~ls~~la~~---g~---~~V~gvD~s~-~i~~a~~~~--------------~~-----~g---  247 (319)
                      +.-+|+..||+||    .+++.+.+.   ..   -+++|+|+|+ +++.|++-.              ++     .+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4469999999999    455555551   12   3899999999 998887521              10     01   


Q ss_pred             -----CCCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         248 -----YDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       248 -----~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                           +..+|+|...|+.+...+.+.||+|+|-.+.-++ ..+...++++.+++.|+|||+|++.+..
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence                 1157899999998843445899999996655544 4466789999999999999999976543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.56  E-value=5.4e-07  Score=92.95  Aligned_cols=127  Identities=18%  Similarity=0.073  Sum_probs=93.1

Q ss_pred             cccHHHHHHHHhccccc-CCCcceeeccCCCchHHHHHHHc---------------------------------------
Q psy8709         183 PIRTESYKSAILNNKSL-FNNKHVIDVGAGTGILSIFAAQA---------------------------------------  222 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~---------------------------------------  222 (319)
                      .+-.+.+...++..... .++..++|.+||+|.+.+.++..                                       
T Consensus       171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~  250 (702)
T PRK11783        171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA  250 (702)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence            34457888888877766 55789999999999999887652                                       


Q ss_pred             ----CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC--CceeEEEeccchhhhcc-hhhHHHHHHHH
Q psy8709         223 ----GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV--ESVDIIISEWMGYFLLF-ETMIDSVIDAR  294 (319)
Q Consensus       223 ----g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~--~~fD~Iis~~~~~~l~~-~~~~~~~l~~~  294 (319)
                          ...+++|+|+++ +++.|++|+..+|+.+.+++.++|+.+++.+.  ++||+|++|+++..-.. ...+..+...+
T Consensus       251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~l  330 (702)
T PRK11783        251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQL  330 (702)
T ss_pred             cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHH
Confidence                012699999999 99999999999999888999999998876542  47999999998643222 23334443333


Q ss_pred             hccc---CCCcEEEeecC
Q psy8709         295 NRFL---KPDGVVCPNRF  309 (319)
Q Consensus       295 ~r~L---kpgG~li~~~~  309 (319)
                      .+.|   .+|+.+++-+.
T Consensus       331 g~~lk~~~~g~~~~llt~  348 (702)
T PRK11783        331 GRRLKQQFGGWNAALFSS  348 (702)
T ss_pred             HHHHHHhCCCCeEEEEeC
Confidence            3333   48877764443

>KOG1661|consensus

Probab=98.56  E-value=2e-07  Score=80.44  Aligned_cols=113  Identities=18%  Similarity=0.158  Sum_probs=84.9

Q ss_pred             HHHHHHHHhcccc--cCCCcceeeccCCCchHHHHHHHc-C--CCEEEEEecHH-HHHHHHHHHHhcCC---------CC
Q psy8709         186 TESYKSAILNNKS--LFNNKHVIDVGAGTGILSIFAAQA-G--AAKVFAIEKSD-IAYETIDIIRKNKY---------DS  250 (319)
Q Consensus       186 ~~~~~~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g--~~~V~gvD~s~-~i~~a~~~~~~~g~---------~~  250 (319)
                      ...+...+++.+.  +.+|.+.||+|.|+|+++..++.. +  ...+.|||.-+ .++.+.+++...--         ..
T Consensus        65 Ap~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~  144 (237)
T KOG1661|consen   65 APHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG  144 (237)
T ss_pred             chHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence            3455666677766  788999999999999999988863 2  33459999999 99999988865431         25


Q ss_pred             cEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       251 ~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +..++.+|......+..+||.|++...-         .++.+++...|+|||.+++-
T Consensus       145 ~l~ivvGDgr~g~~e~a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  145 ELSIVVGDGRKGYAEQAPYDAIHVGAAA---------SELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             ceEEEeCCccccCCccCCcceEEEccCc---------cccHHHHHHhhccCCeEEEe
Confidence            7788999998887777899999976421         23344555688998888753

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.55  E-value=1.3e-06  Score=79.31  Aligned_cols=131  Identities=12%  Similarity=0.070  Sum_probs=99.4

Q ss_pred             CcccHHHHHHHHhcccc----cCCCcceeeccCCCchHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEE
Q psy8709         182 TPIRTESYKSAILNNKS----LFNNKHVIDVGAGTGILSIFAAQ-AG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIE  253 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~----~~~~~~VLDiGcGtG~ls~~la~-~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~  253 (319)
                      .+.+...+.+.+...+.    ....-+||||.||.|.....+.. .+  ..+|.-.|.|+ .++..++.++.+|+.+.++
T Consensus       112 IR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~  191 (311)
T PF12147_consen  112 IRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIAR  191 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceE
Confidence            44444444444444332    23446999999999988776666 33  36999999999 9999999999999977779


Q ss_pred             EEEcCccccc-c--CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         254 VYHKLLEDVE-L--PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       254 ~i~~d~~~~~-~--~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      |.++|+.+.. +  -....++++....+-.+.....+...+..+.+.+.|||+++.+...++
T Consensus       192 f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH  253 (311)
T PF12147_consen  192 FEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH  253 (311)
T ss_pred             EEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence            9999997752 1  124679999887776666656688889999999999999998876554

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.54  E-value=2.8e-07  Score=91.51  Aligned_cols=108  Identities=16%  Similarity=0.161  Sum_probs=86.5

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEecc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIISEW  276 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis~~  276 (319)
                      .+..+||||||.|.+...+|.. +...++|+|+.. .+..+.+.+...++ .|+.++.+|+..+  .++.+++|.|+.+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~F  425 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILF  425 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence            3568999999999999998884 667999999999 88888888888887 7899998887544  36678899999988


Q ss_pred             chhhhcch--h---hHHHHHHHHhcccCCCcEEEeecC
Q psy8709         277 MGYFLLFE--T---MIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       277 ~~~~l~~~--~---~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +-.|.-..  .   .-+.++..+.+.|+|||.+.+.+-
T Consensus       426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD  463 (506)
T PRK01544        426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD  463 (506)
T ss_pred             CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence            77664221  1   146789999999999999987653

>KOG3045|consensus

Probab=98.52  E-value=1.7e-07  Score=83.17  Aligned_cols=91  Identities=23%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY  279 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~  279 (319)
                      .....|.|+|||.+.++.   .. ..+|+..|+-+               .+-.++.+|+.++|+++++.|++++.....
T Consensus       179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLM  239 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCLSLM  239 (325)
T ss_pred             cCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeHhhh
Confidence            344689999999998765   22 23899999887               345678899999999999999999754322


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                         + .++..++.+++|+|+|||.+++...+..+
T Consensus       240 ---g-tn~~df~kEa~RiLk~gG~l~IAEv~SRf  269 (325)
T KOG3045|consen  240 ---G-TNLADFIKEANRILKPGGLLYIAEVKSRF  269 (325)
T ss_pred             ---c-ccHHHHHHHHHHHhccCceEEEEehhhhc
Confidence               2 57889999999999999999987665443

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.51  E-value=4.5e-07  Score=84.58  Aligned_cols=125  Identities=14%  Similarity=0.043  Sum_probs=82.1

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--------CCCEEEEEecHH-HHHHHHHHHHhcCCC-CcE
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--------GAAKVFAIEKSD-IAYETIDIIRKNKYD-SQI  252 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--------g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i  252 (319)
                      -.+...+.+.+...+...++.+|+|.+||+|.+...+.+.        ...+++|+|+++ ++..|.-++..++.. .+.
T Consensus        28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~  107 (311)
T PF02384_consen   28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI  107 (311)
T ss_dssp             C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC
T ss_pred             eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc
Confidence            3445777788888888888889999999999998877662        455999999999 888887776655543 234


Q ss_pred             EEEEcCccccccC--CCceeEEEeccchhhh--cc----------------hhhHHHHHHHHhcccCCCcEEEee
Q psy8709         253 EVYHKLLEDVELP--VESVDIIISEWMGYFL--LF----------------ETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       253 ~~i~~d~~~~~~~--~~~fD~Iis~~~~~~l--~~----------------~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .+..+|....+..  ..+||+|++|+++...  ..                ...--.++..+.+.|++||++.+-
T Consensus       108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I  182 (311)
T PF02384_consen  108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII  182 (311)
T ss_dssp             EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence            6888887654432  4689999999976533  00                011124778888999999986543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1663|consensus

Probab=98.51  E-value=1.1e-06  Score=77.09  Aligned_cols=119  Identities=16%  Similarity=0.145  Sum_probs=92.6

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc---
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV---  262 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~---  262 (319)
                      ..+++...+.....+++||+|.=||+-+...|..  ..++|+++|+++ ..+.+.+..+..|...+|++++++..+.   
T Consensus        61 ~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~  140 (237)
T KOG1663|consen   61 KGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE  140 (237)
T ss_pred             HHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence            3444455555666789999999999888877774  346999999999 9999999999999999999999998654   


Q ss_pred             ---ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         263 ---ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       263 ---~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                         ..+.+.||.++.+.      ...+....+.++.++||+||+++++..-++-
T Consensus       141 l~~~~~~~tfDfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G  188 (237)
T KOG1663|consen  141 LLADGESGTFDFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG  188 (237)
T ss_pred             HHhcCCCCceeEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence               23457999999643      1234457778888999999999988755543

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.50  E-value=3.9e-07  Score=86.93  Aligned_cols=100  Identities=18%  Similarity=0.160  Sum_probs=82.8

Q ss_pred             cceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc-CCCceeEEEeccch
Q psy8709         203 KHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL-PVESVDIIISEWMG  278 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~-~~~~fD~Iis~~~~  278 (319)
                      .+|||+.||+|..++.++..  |..+|+++|+++ .++.+++|++.|+. .+++++++|+..... ...+||+|..++.+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlDPfG  124 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYRNRKFHVIDIDPFG  124 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence            48999999999999999986  678999999999 99999999999987 478999999876632 13579999988732


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                             ....++..+.+.+++||+++++...
T Consensus       125 -------s~~~fld~al~~~~~~glL~vTaTD  149 (374)
T TIGR00308       125 -------TPAPFVDSAIQASAERGLLLVTATD  149 (374)
T ss_pred             -------CcHHHHHHHHHhcccCCEEEEEecc
Confidence                   2235777888899999999988543

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.50  E-value=2.2e-07  Score=85.45  Aligned_cols=107  Identities=19%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             cceeeccCCCc----hHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHH------------------h-----cC--
Q psy8709         203 KHVIDVGAGTG----ILSIFAAQA-G----AAKVFAIEKSD-IAYETIDIIR------------------K-----NK--  247 (319)
Q Consensus       203 ~~VLDiGcGtG----~ls~~la~~-g----~~~V~gvD~s~-~i~~a~~~~~------------------~-----~g--  247 (319)
                      -+|+..||+||    .+++.+.+. +    .-+|+|+|+|+ +++.|++-.-                  .     .+  
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~  196 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV  196 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence            69999999999    445555553 1    23799999999 9999886420                  0     01  


Q ss_pred             -----CCCcEEEEEcCccccccC-CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         248 -----YDSQIEVYHKLLEDVELP-VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       248 -----~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                           +...|+|...|+.+.+++ .+.||+|+|..++.++ ..+....++..+++.|+|||+|++.+.-
T Consensus       197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE  264 (287)
T PRK10611        197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGHSE  264 (287)
T ss_pred             EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence                 125678888888775433 5789999996665544 3467889999999999999999976653

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.50  E-value=2.9e-07  Score=77.48  Aligned_cols=74  Identities=16%  Similarity=0.055  Sum_probs=56.0

Q ss_pred             ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCc-eeEEEeccch
Q psy8709         204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVES-VDIIISEWMG  278 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~-fD~Iis~~~~  278 (319)
                      .|+|+.||.|..++.+++. ..+|+++|+++ .++.|+.|++-.|..+++.++++|+.+..  +.... +|+|+++++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW   79 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW   79 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence            6899999999999999998 45999999999 99999999999999899999999998763  22122 8999998754

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.50  E-value=3.8e-07  Score=86.63  Aligned_cols=95  Identities=21%  Similarity=0.185  Sum_probs=69.3

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ...+.+.+.+++.++..++ .+||+-||.|.++..+++.. .+|+|||.++ +++.|+++++.|++ ++++|+.++++++
T Consensus       180 ~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~  256 (352)
T PF05958_consen  180 EQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDF  256 (352)
T ss_dssp             HHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHC
T ss_pred             HHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccch
Confidence            3347788888888887766 79999999999999999984 5999999999 99999999999999 7899999887654


Q ss_pred             c----------------cCCCceeEEEeccchhhh
Q psy8709         263 E----------------LPVESVDIIISEWMGYFL  281 (319)
Q Consensus       263 ~----------------~~~~~fD~Iis~~~~~~l  281 (319)
                      .                .....+|+|+.+|+--.+
T Consensus       257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~  291 (352)
T PF05958_consen  257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL  291 (352)
T ss_dssp             CCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred             hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence            1                112368999999876543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.50  E-value=6.5e-07  Score=80.12  Aligned_cols=94  Identities=23%  Similarity=0.233  Sum_probs=69.9

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY  279 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~  279 (319)
                      ...++||||+|.|..+..++.. ..+|++.|.|+ |    +.++++.|+    +++  +..+..-...+||+|.|-.+  
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~M----r~rL~~kg~----~vl--~~~~w~~~~~~fDvIscLNv--  160 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPM----RWRLSKKGF----TVL--DIDDWQQTDFKFDVISCLNV--  160 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHH----HHHHHhCCC----eEE--ehhhhhccCCceEEEeehhh--
Confidence            4468999999999999999886 56999999999 6    444555665    222  22223223468999997444  


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                       +..-..+..+|+.+++.|+|+|++++..
T Consensus       161 -LDRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  161 -LDRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             -hhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence             3444678899999999999999998654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=1.2e-06  Score=83.36  Aligned_cols=118  Identities=19%  Similarity=0.142  Sum_probs=92.0

Q ss_pred             cccccCCCcceeeccCCCchHHHHHHHcC---CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cC-CC
Q psy8709         195 NNKSLFNNKHVIDVGAGTGILSIFAAQAG---AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LP-VE  267 (319)
Q Consensus       195 ~~l~~~~~~~VLDiGcGtG~ls~~la~~g---~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~-~~  267 (319)
                      ..+...+|.+|||+.++.|.=+..++...   ...|+++|.++ -+....++++..|. .++.+++.|....+  .+ .+
T Consensus       150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-~nv~~~~~d~~~~~~~~~~~~  228 (355)
T COG0144         150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-RNVIVVNKDARRLAELLPGGE  228 (355)
T ss_pred             HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-CceEEEecccccccccccccC
Confidence            45678888999999999999999888852   23579999999 99999999999999 45788888876542  22 23


Q ss_pred             ceeEEEeccchhhhc------------ch-------hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         268 SVDIIISEWMGYFLL------------FE-------TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~------------~~-------~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      +||.|+.+.+.....            ..       ....++|..+.++|||||.|+.++||+..
T Consensus       229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~  293 (355)
T COG0144         229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP  293 (355)
T ss_pred             cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence            699999876543211            11       22467899999999999999999999864

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.46  E-value=1.2e-07  Score=91.73  Aligned_cols=120  Identities=13%  Similarity=0.215  Sum_probs=76.3

Q ss_pred             HHHHHHHhccccc--CCC--cceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         187 ESYKSAILNNKSL--FNN--KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       187 ~~~~~~i~~~l~~--~~~--~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ..+.+.+.+.++.  ..+  ..+||+|||+|.++..+...+. .+..+-....-+...+.+.+.|++.-+.+  .-...+
T Consensus        99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGvpa~~~~--~~s~rL  175 (506)
T PF03141_consen   99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGVPAMIGV--LGSQRL  175 (506)
T ss_pred             HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCcchhhhh--hccccc
Confidence            4555555555544  222  4799999999999999999865 33333332211122233444565332222  123457


Q ss_pred             ccCCCceeEEEeccch-hhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         263 ELPVESVDIIISEWMG-YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~-~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ++|...||+|.|.-.. .|....   ..+|-++.|+|+|||+++.+...++
T Consensus       176 Pfp~~~fDmvHcsrc~i~W~~~~---g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  176 PFPSNAFDMVHCSRCLIPWHPND---GFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             cCCccchhhhhcccccccchhcc---cceeehhhhhhccCceEEecCCccc
Confidence            8999999999985432 232222   3578899999999999999888766

; GO: 0008168 methyltransferase activity

>PRK04148 hypothetical protein; Provisional

Probab=98.44  E-value=2e-06  Score=69.98  Aligned_cols=79  Identities=16%  Similarity=0.202  Sum_probs=60.7

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCch-HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGI-LSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~-ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      .+.+++.+.+...++.++||||||+|. ++..+++.|. .|+++|+++ .++.+++    +    .+.++.+|+.+..+.
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~----~----~~~~v~dDlf~p~~~   73 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKK----L----GLNAFVDDLFNPNLE   73 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----h----CCeEEECcCCCCCHH
Confidence            355666666666667899999999996 8888888876 999999999 6555543    3    357899999876543


Q ss_pred             -CCceeEEEec
Q psy8709         266 -VESVDIIISE  275 (319)
Q Consensus       266 -~~~fD~Iis~  275 (319)
                       -+.+|+|.+.
T Consensus        74 ~y~~a~liysi   84 (134)
T PRK04148         74 IYKNAKLIYSI   84 (134)
T ss_pred             HHhcCCEEEEe
Confidence             3679999974

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.44  E-value=1e-06  Score=80.80  Aligned_cols=112  Identities=16%  Similarity=0.111  Sum_probs=86.9

Q ss_pred             cceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcC--C-CCcEEEEEcCcccccc-CCCceeEEEecc
Q psy8709         203 KHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNK--Y-DSQIEVYHKLLEDVEL-PVESVDIIISEW  276 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g--~-~~~i~~i~~d~~~~~~-~~~~fD~Iis~~  276 (319)
                      ++||-+|.|.|..++.+.+.. ..+++.+|+++ .++.+++.+....  . .++++++.+|..++-- ..++||+|+++.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            699999999999999999974 67999999999 9999998875432  2 3799999999877632 224899999875


Q ss_pred             chhhhcchhh--HHHHHHHHhcccCCCcEEEeecCcceeec
Q psy8709         277 MGYFLLFETM--IDSVIDARNRFLKPDGVVCPNRFTLSLCG  315 (319)
Q Consensus       277 ~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~t~~~~~  315 (319)
                      .-. ......  -..+++.+++.|+|+|+++.++.+.++..
T Consensus       158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~  197 (282)
T COG0421         158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD  197 (282)
T ss_pred             CCC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence            322 111011  25789999999999999999977766553

>PRK00536 speE spermidine synthase; Provisional

Probab=98.43  E-value=1.6e-06  Score=78.76  Aligned_cols=103  Identities=20%  Similarity=0.087  Sum_probs=78.9

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc--C-CCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN--K-YDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~--g-~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      .+.++||-+|.|.|...+.+++++. +|+-||+++ +++.+++.+...  + -+++++++.. +.  ....++||+||.+
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD  146 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL  146 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence            4458999999999999999999864 999999999 999998844321  1 2367887762 21  1123689999987


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                      ...        -..+.+.+++.|+|||+++....+.++.
T Consensus       147 s~~--------~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~  177 (262)
T PRK00536        147 QEP--------DIHKIDGLKRMLKEDGVFISVAKHPLLE  177 (262)
T ss_pred             CCC--------ChHHHHHHHHhcCCCcEEEECCCCcccC
Confidence            531        1467788999999999999988877754

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.41  E-value=4.4e-07  Score=81.97  Aligned_cols=112  Identities=17%  Similarity=0.094  Sum_probs=80.9

Q ss_pred             CCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcC---CCCcEEEEEcCccccc-cCCC-ceeEEE
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNK---YDSQIEVYHKLLEDVE-LPVE-SVDIII  273 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g---~~~~i~~i~~d~~~~~-~~~~-~fD~Ii  273 (319)
                      +.++||-+|.|.|..+..+.+.+ ..+++.||+++ +++.+++.+....   ..++++++.+|...+- -..+ +||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            56899999999999999999875 67999999999 9999988765432   2369999999997652 2224 899999


Q ss_pred             eccchhhhcch-hhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         274 SEWMGYFLLFE-TMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       274 s~~~~~~l~~~-~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      .+......... -.-..+++.+.+.|+|||+++.+..+.+
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~  195 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF  195 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence            86543111110 1135788999999999999998764443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.36  E-value=1.3e-06  Score=80.49  Aligned_cols=117  Identities=15%  Similarity=0.134  Sum_probs=91.1

Q ss_pred             ccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCcee
Q psy8709         196 NKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVD  270 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD  270 (319)
                      .+...++..|||+++|.|.-+..++..  +.+.+++.|+++ -+.....+++..|. .++.+...|.....  .+...||
T Consensus        80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~~fd  158 (283)
T PF01189_consen   80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPESKFD  158 (283)
T ss_dssp             HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTTTEE
T ss_pred             cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccccccccccc
Confidence            356677889999999999999888884  357999999999 99999999999998 67888888877652  3334699


Q ss_pred             EEEeccchhhhc----c--------h-------hhHHHHHHHHhccc----CCCcEEEeecCccee
Q psy8709         271 IIISEWMGYFLL----F--------E-------TMIDSVIDARNRFL----KPDGVVCPNRFTLSL  313 (319)
Q Consensus       271 ~Iis~~~~~~l~----~--------~-------~~~~~~l~~~~r~L----kpgG~li~~~~t~~~  313 (319)
                      .|+.+.+.....    +        .       ....++|..+.+++    ||||+++.++||+.-
T Consensus       159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~  224 (283)
T PF01189_consen  159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP  224 (283)
T ss_dssp             EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred             hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence            999876543221    0        1       12456799999999    999999999999853

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2915|consensus

Probab=98.35  E-value=2.7e-06  Score=76.19  Aligned_cols=107  Identities=20%  Similarity=0.304  Sum_probs=87.4

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC--
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP--  265 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~--  265 (319)
                      ..|+..+...+|.+|++-|.|+|.++.++++.  +-++++..|+.. ..++|++-.+..++.+++++.+.|+....+.  
T Consensus        95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k  174 (314)
T KOG2915|consen   95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK  174 (314)
T ss_pred             HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence            37788889999999999999999999999994  557999999999 9999999999999999999999999877654  


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCc-EEE
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG-VVC  305 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG-~li  305 (319)
                      ...+|.|+.+.+-.|.        .+.-+++.||.+| +++
T Consensus       175 s~~aDaVFLDlPaPw~--------AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  175 SLKADAVFLDLPAPWE--------AIPHAAKILKDEGGRLC  207 (314)
T ss_pred             ccccceEEEcCCChhh--------hhhhhHHHhhhcCceEE
Confidence            4689999987664442        2333445777765 444

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.33  E-value=1e-06  Score=75.29  Aligned_cols=108  Identities=26%  Similarity=0.289  Sum_probs=83.0

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+..+.+...+++|||+|+|+|..++..++.|+..|++.|+.+ ......-|.+.||.  .+.+...|...   .
T Consensus        65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~  139 (218)
T COG3897          65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---S  139 (218)
T ss_pred             HHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---C
Confidence            345667777778888999999999999999999999999999999999 77777888888886  78888888754   3


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcE
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV  303 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~  303 (319)
                      ...||+|+..-++|-   .....+++. +.+.|+..|.
T Consensus       140 ~~~~Dl~LagDlfy~---~~~a~~l~~-~~~~l~~~g~  173 (218)
T COG3897         140 PPAFDLLLAGDLFYN---HTEADRLIP-WKDRLAEAGA  173 (218)
T ss_pred             CcceeEEEeeceecC---chHHHHHHH-HHHHHHhCCC
Confidence            468999997655432   244455555 4455555444

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.30  E-value=4.1e-06  Score=76.21  Aligned_cols=107  Identities=15%  Similarity=0.139  Sum_probs=75.7

Q ss_pred             CcceeeccCCCc----hHHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHh-----cCC-----------------
Q psy8709         202 NKHVIDVGAGTG----ILSIFAAQAG------AAKVFAIEKSD-IAYETIDIIRK-----NKY-----------------  248 (319)
Q Consensus       202 ~~~VLDiGcGtG----~ls~~la~~g------~~~V~gvD~s~-~i~~a~~~~~~-----~g~-----------------  248 (319)
                      .-+|+-+||+||    .+++.+.+.+      .-+|+|+|++. +++.|+.-.-.     .++                 
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            468999999999    5555565542      24899999999 99888742211     111                 


Q ss_pred             ------CCcEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         249 ------DSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       249 ------~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                            ...|.|...|+....+..+.||+|+|-.+.-+ ..++...+++...+..|+|||+|++-+.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIY-Fd~~~q~~il~~f~~~L~~gG~LflG~s  242 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIY-FDEETQERILRRFADSLKPGGLLFLGHS  242 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEe-eCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence                  13566667777665534478999999544333 3456778999999999999999997554

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.29  E-value=3.1e-06  Score=84.68  Aligned_cols=114  Identities=14%  Similarity=0.067  Sum_probs=76.8

Q ss_pred             CCcceeeccCCCchHHHHHHHcC---------CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----cC
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAG---------AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----LP  265 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g---------~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----~~  265 (319)
                      ...+|||.|||+|.+...++...         ..+++|+|+++ .+..+..++...+. ..+.+..+|.....     ..
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~  109 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY  109 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence            34689999999999998877631         14789999999 99999888876652 23455555543211     11


Q ss_pred             CCceeEEEeccchhhhcch-------------------------------------------hhHHHHH-HHHhcccCCC
Q psy8709         266 VESVDIIISEWMGYFLLFE-------------------------------------------TMIDSVI-DARNRFLKPD  301 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~-------------------------------------------~~~~~~l-~~~~r~Lkpg  301 (319)
                      .+.||+||+|+|+--....                                           .....++ ..+.++|+||
T Consensus       110 ~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~  189 (524)
T TIGR02987       110 LDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKN  189 (524)
T ss_pred             cCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCC
Confidence            2589999999987543210                                           0011133 5678999999


Q ss_pred             cEEEeecCcceeec
Q psy8709         302 GVVCPNRFTLSLCG  315 (319)
Q Consensus       302 G~li~~~~t~~~~~  315 (319)
                      |++.+-.++-++..
T Consensus       190 G~~~~I~P~s~l~~  203 (524)
T TIGR02987       190 GYVSIISPASWLGD  203 (524)
T ss_pred             CEEEEEEChHHhcC
Confidence            99887666655543

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG0822|consensus

Probab=98.26  E-value=2.6e-06  Score=82.42  Aligned_cols=114  Identities=25%  Similarity=0.392  Sum_probs=87.6

Q ss_pred             cceeeccCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         203 KHVIDVGAGTGILSIFAAQA-----GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~-----g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ..|+-+|+|-|-+.....+.     -.-++++++.+| ++-... +.+-....++++++.+|+.....|.++.|+++|+.
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~-~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL  447 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ-NRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL  447 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh-hhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence            36788899999776544432     123899999999 443333 34444556899999999999986668999999998


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                      .+.+-.. +.-++.|..+.++|||+|+.||...|-|++|+.+
T Consensus       448 LGSFGDN-ELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS  488 (649)
T KOG0822|consen  448 LGSFGDN-ELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMS  488 (649)
T ss_pred             hccccCc-cCCHHHHHHHHhhcCCCceEccchhhhhhccccc
Confidence            7765333 3446788999999999999999999999999864

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.25  E-value=2e-05  Score=67.40  Aligned_cols=119  Identities=19%  Similarity=0.248  Sum_probs=82.9

Q ss_pred             hhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH--HHHHHHHhcccccC-
Q psy8709         125 EMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT--ESYKSAILNNKSLF-  200 (319)
Q Consensus       125 ~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~--~~~~~~i~~~l~~~-  200 (319)
                      .|+|.++|.....+     ..+.++.++||+|||||.++++.+..+ ..+++|+|.++.+...  .+..++-.+++... 
T Consensus        16 p~TK~EIRal~ls~-----L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~   90 (187)
T COG2242          16 PMTKEEIRALTLSK-----LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE   90 (187)
T ss_pred             CCcHHHHHHHHHHh-----hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            38999999887776     568899999999999999999999777 8999999998776665  44444444443221 


Q ss_pred             ----------CCcceeeccCCCchHHHHH---HH--cCCCEEEEEecHH-HHHHHHHHHHhcCCC
Q psy8709         201 ----------NNKHVIDVGAGTGILSIFA---AQ--AGAAKVFAIEKSD-IAYETIDIIRKNKYD  249 (319)
Q Consensus       201 ----------~~~~VLDiGcGtG~ls~~l---a~--~g~~~V~gvD~s~-~i~~a~~~~~~~g~~  249 (319)
                                +.-..+=+|.| |.+...+   ..  .+..++++-=+.- .+..+.+.+++.|..
T Consensus        91 g~Ap~~L~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~  154 (187)
T COG2242          91 GDAPEALPDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR  154 (187)
T ss_pred             ccchHhhcCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence                      12345557777 5443322   22  2344676666666 777888888888764

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.24  E-value=2.4e-06  Score=78.88  Aligned_cols=55  Identities=33%  Similarity=0.430  Sum_probs=43.0

Q ss_pred             HHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHH
Q psy8709         135 SYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKS  191 (319)
Q Consensus       135 ~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~  191 (319)
                      ....++...  ..++++|||+|||||+|++.|+++|+++|+|+|+|+.......-+.
T Consensus       150 lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~  204 (295)
T PF06325_consen  150 LCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENA  204 (295)
T ss_dssp             HHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHH
T ss_pred             HHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHH
Confidence            334444333  5688999999999999999999999999999999988766644443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.23  E-value=1.1e-05  Score=73.44  Aligned_cols=101  Identities=24%  Similarity=0.249  Sum_probs=75.1

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh----c-----------------------------
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK----N-----------------------------  246 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~----~-----------------------------  246 (319)
                      ...+||-.|||.|+++..++..|. .+.|.|.|- |+-...-.+..    +                             
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            346899999999999999999988 999999999 75433322211    0                             


Q ss_pred             ------CCCCcEEEEEcCccccccCC---CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         247 ------KYDSQIEVYHKLLEDVELPV---ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       247 ------g~~~~i~~i~~d~~~~~~~~---~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                            ....++....||+.++-.+.   ++||+|++.   +++....++-..+..+.++|||||+.|
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEE
Confidence                  01135566677777664443   699999965   455666778999999999999999655

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.22  E-value=5.9e-06  Score=72.69  Aligned_cols=95  Identities=20%  Similarity=0.244  Sum_probs=78.2

Q ss_pred             CcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc-eeEEEeccch
Q psy8709         202 NKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES-VDIIISEWMG  278 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~-fD~Iis~~~~  278 (319)
                      +.+++|||+|.|.-+..++- .+..+|+-+|... -+...+......++ +|++++++.++++... .. ||+|.|-.+ 
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~-~~~~D~vtsRAv-  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQE-KKQYDVVTSRAV-  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccc-cccCcEEEeehc-
Confidence            57999999999999988774 4555799999998 88888888888888 7899999999998643 23 999998665 


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                            ..+..+..-+..++|+||.++
T Consensus       145 ------a~L~~l~e~~~pllk~~g~~~  165 (215)
T COG0357         145 ------ASLNVLLELCLPLLKVGGGFL  165 (215)
T ss_pred             ------cchHHHHHHHHHhcccCCcch
Confidence                  456777888889999988864

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.22  E-value=3e-06  Score=78.26  Aligned_cols=85  Identities=14%  Similarity=0.155  Sum_probs=68.3

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--  263 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--  263 (319)
                      +.+.+++.+...++..++|.+||.|..+..+++..  ..+|+|+|.++ +++.+++.+..   .++++++++++.++.  
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~   83 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEV   83 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHH
Confidence            44556666666778899999999999999999863  46999999999 99999888755   368999999998763  


Q ss_pred             cCC--CceeEEEecc
Q psy8709         264 LPV--ESVDIIISEW  276 (319)
Q Consensus       264 ~~~--~~fD~Iis~~  276 (319)
                      ++.  .++|.|+++.
T Consensus        84 l~~~~~~vDgIl~DL   98 (296)
T PRK00050         84 LAEGLGKVDGILLDL   98 (296)
T ss_pred             HHcCCCccCEEEECC
Confidence            221  2799999864

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.22  E-value=4e-06  Score=76.46  Aligned_cols=91  Identities=16%  Similarity=0.214  Sum_probs=74.6

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ....+.+.+.+.+...++..|||+|+|+|.++..+++.+ .+++++|+++ +++..++...   ..++++++.+|+..+.
T Consensus        14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~   89 (262)
T PF00398_consen   14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWD   89 (262)
T ss_dssp             EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSC
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccc
Confidence            356778888888888888999999999999999999987 6999999999 7777776554   2368999999999887


Q ss_pred             cCC---CceeEEEeccchh
Q psy8709         264 LPV---ESVDIIISEWMGY  279 (319)
Q Consensus       264 ~~~---~~fD~Iis~~~~~  279 (319)
                      .+.   .....|++|.+++
T Consensus        90 ~~~~~~~~~~~vv~NlPy~  108 (262)
T PF00398_consen   90 LYDLLKNQPLLVVGNLPYN  108 (262)
T ss_dssp             GGGHCSSSEEEEEEEETGT
T ss_pred             cHHhhcCCceEEEEEeccc
Confidence            663   4678888887753

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG2187|consensus

Probab=98.21  E-value=4.4e-06  Score=80.92  Aligned_cols=121  Identities=21%  Similarity=0.142  Sum_probs=88.5

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ...+.+...+.+++.+..++.+||+.||||.++..+++. .++|+||++++ .+..|+.+++.||+ .|.+|++|.++++
T Consensus       366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAEDL  443 (534)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc-cceeeeecchhhc
Confidence            345778888889999999999999999999999998886 66999999999 99999999999999 7999999977765


Q ss_pred             c---c--CCCcee-EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         263 E---L--PVESVD-IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       263 ~---~--~~~~fD-~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      -   +  ..++-+ ++|.+++--.     .-..++..+.++-++- +++.-+|+++
T Consensus       444 ~~sl~~~~~~~~~~v~iiDPpR~G-----lh~~~ik~l~~~~~~~-rlvyvSCn~~  493 (534)
T KOG2187|consen  444 FPSLLTPCCDSETLVAIIDPPRKG-----LHMKVIKALRAYKNPR-RLVYVSCNPH  493 (534)
T ss_pred             cchhcccCCCCCceEEEECCCccc-----ccHHHHHHHHhccCcc-ceEEEEcCHH
Confidence            2   1  112334 5556665322     2234555555554454 3444445444

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.20  E-value=1.1e-05  Score=70.74  Aligned_cols=98  Identities=26%  Similarity=0.276  Sum_probs=69.3

Q ss_pred             eeeccCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhc
Q psy8709         205 VIDVGAGTGILSIFAAQAGA-AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLL  282 (319)
Q Consensus       205 VLDiGcGtG~ls~~la~~g~-~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~  282 (319)
                      |.||||--|+++..+.+.|. .+++++|+++ -++.|++++...++.+++++..+|..+.-.+.+..|.|+..+|+-.  
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~--   78 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE--   78 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence            68999999999999999764 5799999999 9999999999999999999999997654333344899998887653  


Q ss_pred             chhhHHHHHHHHhcccCCCcEEEee
Q psy8709         283 FETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       283 ~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                         ....+|.+....++....|++.
T Consensus        79 ---lI~~ILe~~~~~~~~~~~lILq  100 (205)
T PF04816_consen   79 ---LIIEILEAGPEKLSSAKRLILQ  100 (205)
T ss_dssp             ---HHHHHHHHTGGGGTT--EEEEE
T ss_pred             ---HHHHHHHhhHHHhccCCeEEEe
Confidence               3456666666555554455543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.19  E-value=8.4e-06  Score=71.52  Aligned_cols=114  Identities=19%  Similarity=0.272  Sum_probs=68.4

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHH-------HhcCC-CCcEEEEEc
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDII-------RKNKY-DSQIEVYHK  257 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~-------~~~g~-~~~i~~i~~  257 (319)
                      .....++..+.+.++...+|+|||.|.....++- .++.+.+|||+.+ ..+.|....       +..|. ..++++.++
T Consensus        29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g  108 (205)
T PF08123_consen   29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG  108 (205)
T ss_dssp             HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred             HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence            3444556667788889999999999999877665 5787899999999 666655432       22333 357888999


Q ss_pred             CccccccC---CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         258 LLEDVELP---VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       258 d~~~~~~~---~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      |+.+.+..   -...|+|++|...    +.+.+...|.+...-||+|-+++
T Consensus       109 dfl~~~~~~~~~s~AdvVf~Nn~~----F~~~l~~~L~~~~~~lk~G~~II  155 (205)
T PF08123_consen  109 DFLDPDFVKDIWSDADVVFVNNTC----FDPDLNLALAELLLELKPGARII  155 (205)
T ss_dssp             -TTTHHHHHHHGHC-SEEEE--TT----T-HHHHHHHHHHHTTS-TT-EEE
T ss_pred             CccccHhHhhhhcCCCEEEEeccc----cCHHHHHHHHHHHhcCCCCCEEE
Confidence            98765321   1357999987642    23455566677778899887765

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.15  E-value=4.3e-06  Score=71.70  Aligned_cols=96  Identities=24%  Similarity=0.297  Sum_probs=62.3

Q ss_pred             CCcceeeccCCCchHHHHHHHcC--CCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------cC--CCc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--------LP--VES  268 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------~~--~~~  268 (319)
                      ++.+|||+||++|.++..+.+.+  ..+|+|+|+.++          ... ..+.++.+|+.+..        ++  .++
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence            44899999999999999999986  579999999983          111 45667777765431        11  268


Q ss_pred             eeEEEeccchhhhcc--------hhhHHHHHHHHhcccCCCcEEEee
Q psy8709         269 VDIIISEWMGYFLLF--------ETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       269 fD~Iis~~~~~~l~~--------~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ||+|+|+........        .......+.-+.+.|+|||.++.-
T Consensus        92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            999999873222111        122344455666789999988753

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG2730|consensus

Probab=98.15  E-value=3e-06  Score=73.68  Aligned_cols=76  Identities=17%  Similarity=0.047  Sum_probs=64.7

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc----ccCCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV----ELPVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~----~~~~~~fD~Iis~  275 (319)
                      ....|+|.-||.|..+..++..+. .|++||+++ -+..|+.|++-.|.+++|+|++||+.++    .+....+|+|+..
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence            447899999999999988888866 999999999 9999999999999999999999999875    3344567888865


Q ss_pred             cc
Q psy8709         276 WM  277 (319)
Q Consensus       276 ~~  277 (319)
                      ++
T Consensus       173 pp  174 (263)
T KOG2730|consen  173 PP  174 (263)
T ss_pred             CC
Confidence            54

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=2.1e-06  Score=78.92  Aligned_cols=44  Identities=39%  Similarity=0.582  Sum_probs=39.7

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESY  189 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~  189 (319)
                      ..+++++||+|||||+|++.++++|+.+++|+|+|+.......-
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e  203 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE  203 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH
Confidence            45999999999999999999999999999999999987776444

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.13  E-value=3.3e-05  Score=61.64  Aligned_cols=102  Identities=22%  Similarity=0.251  Sum_probs=70.2

Q ss_pred             eeeccCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc--cccCC-CceeEEEeccch
Q psy8709         205 VIDVGAGTGILSIFAAQAGA--AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED--VELPV-ESVDIIISEWMG  278 (319)
Q Consensus       205 VLDiGcGtG~ls~~la~~g~--~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~--~~~~~-~~fD~Iis~~~~  278 (319)
                      ++|+|||+|... .+.....  ..++|+|+++ ++..+.......+. ..+.+..++...  .++.. ..||++.+....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence            999999999976 4444322  3899999999 77774443322111 116788888776  56654 489999444443


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ++.   . ....+.++.+.|+|+|.+++......
T Consensus       130 ~~~---~-~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         130 HLL---P-PAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             hcC---C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            332   1 67889999999999999987766543

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.08  E-value=2.4e-06  Score=66.63  Aligned_cols=99  Identities=19%  Similarity=0.306  Sum_probs=46.5

Q ss_pred             eeccCCCchHHHHHHHc----CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEeccchh
Q psy8709         206 IDVGAGTGILSIFAAQA----GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIISEWMGY  279 (319)
Q Consensus       206 LDiGcGtG~ls~~la~~----g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis~~~~~  279 (319)
                      ||+|+..|..+..+++.    +..+++++|..+..+...+.+++.++.++++++.++..+.  .++.+++|+|+.+....
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~   80 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS   80 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence            68999999888877763    2237999999985444556666667777899999999765  23347999999877522


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                          .+....-+..+.+.|+|||+++++.
T Consensus        81 ----~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   81 ----YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             ----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence                2455667888999999999999875

>KOG1331|consensus

Probab=98.06  E-value=3.8e-06  Score=75.88  Aligned_cols=95  Identities=16%  Similarity=0.095  Sum_probs=77.0

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF  280 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~  280 (319)
                      +..++|+|||.|-....   .+...++|.|.+. .+..+++    .+   ......+|+.+++++..+||.+++..+.||
T Consensus        46 gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~----~~---~~~~~~ad~l~~p~~~~s~d~~lsiavihh  115 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKR----SG---GDNVCRADALKLPFREESFDAALSIAVIHH  115 (293)
T ss_pred             cceeeecccCCcccCcC---CCcceeeecchhhhhcccccc----CC---CceeehhhhhcCCCCCCccccchhhhhhhh
Confidence            67999999999965322   2445899999999 6555442    11   126788999999999999999999999999


Q ss_pred             hcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         281 LLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       281 l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +........+++++.|.|+|||...+
T Consensus       116 lsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  116 LSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             hhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            98888899999999999999999664

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=3e-05  Score=67.50  Aligned_cols=98  Identities=20%  Similarity=0.261  Sum_probs=70.1

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------cCCCc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--------LPVES  268 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------~~~~~  268 (319)
                      +.++..|+|+|+..|.++..+++. + ...|+|+|+.||          ... .++.++++|+.+-+        ++..+
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~----------~~~-~~V~~iq~d~~~~~~~~~l~~~l~~~~  111 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM----------KPI-PGVIFLQGDITDEDTLEKLLEALGGAP  111 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc----------ccC-CCceEEeeeccCccHHHHHHHHcCCCC
Confidence            445689999999999999999985 2 235999999992          112 46999999997653        34456


Q ss_pred             eeEEEeccch----hh----hcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         269 VDIIISEWMG----YF----LLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       269 fD~Iis~~~~----~~----l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +|+|+|+..-    ++    .........++.-+..+|+|||.++.-
T Consensus       112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K  158 (205)
T COG0293         112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK  158 (205)
T ss_pred             cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence            8999987642    11    111223445566777899999999843

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.02  E-value=2.8e-05  Score=72.59  Aligned_cols=88  Identities=18%  Similarity=0.222  Sum_probs=64.1

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      ..++.++||+||++|.++..+.+.|. +|+|||..+|...    +...   ++|+.+.+|......+.+.+|+++|+...
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~----L~~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmve  280 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQS----LMDT---GQVEHLRADGFKFRPPRKNVDWLVCDMVE  280 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHh----hhCC---CCEEEEeccCcccCCCCCCCCEEEEeccc
Confidence            46788999999999999999999988 9999998884322    2222   57888888876664435789999998752


Q ss_pred             hhhcchhhHHHHHHHHhcccCCC
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPD  301 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~Lkpg  301 (319)
                             .+..+..-+.++|..|
T Consensus       281 -------~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        281 -------KPARVAELMAQWLVNG  296 (357)
T ss_pred             -------CHHHHHHHHHHHHhcC
Confidence                   2334444555555444

>KOG1122|consensus

Probab=98.02  E-value=3.8e-05  Score=72.82  Aligned_cols=115  Identities=11%  Similarity=0.130  Sum_probs=90.5

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---cCCCcee
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---LPVESVD  270 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---~~~~~fD  270 (319)
                      +...++.+|||..+..|.-+..+|..  +-+.|++.|.+. -+.....++...|+ .+..+.+.|..+++   ++ ++||
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~-~~fD  314 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFP-GSFD  314 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccC-cccc
Confidence            45678899999999999888777772  456899999999 89999999999998 56777788876553   44 3899


Q ss_pred             EEEeccchhh--hc-----------------chhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         271 IIISEWMGYF--LL-----------------FETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       271 ~Iis~~~~~~--l~-----------------~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      -|+...+...  +.                 ......++|..+..++++||+|+.++|++..
T Consensus       315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~  376 (460)
T KOG1122|consen  315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV  376 (460)
T ss_pred             eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence            9997765443  11                 1223567888899999999999999999864

>KOG1269|consensus

Probab=98.02  E-value=7.7e-06  Score=77.63  Aligned_cols=104  Identities=20%  Similarity=0.253  Sum_probs=86.7

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++..++|+|||.|.....++......++|++.++ -+..+.......++.++..++.+++-+.++++..||.+-+.-..
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~  188 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV  188 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence            34458999999999999999997777999999999 77777776666666666667888999989999999999975554


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      .+   .+....++.+++|+++|||+++.
T Consensus       189 ~~---~~~~~~~y~Ei~rv~kpGG~~i~  213 (364)
T KOG1269|consen  189 CH---APDLEKVYAEIYRVLKPGGLFIV  213 (364)
T ss_pred             cc---CCcHHHHHHHHhcccCCCceEEe
Confidence            43   37788999999999999999884

>KOG3178|consensus

Probab=98.00  E-value=1.4e-05  Score=74.33  Aligned_cols=97  Identities=14%  Similarity=0.098  Sum_probs=75.4

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL  281 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l  281 (319)
                      ...+|+|.|.|.++..+... ..++-++++.. .+..+...+. .    .|+.+-+|...- .|  +-|+|++.|+.|++
T Consensus       179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~-~P--~~daI~mkWiLhdw  249 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQD-TP--KGDAIWMKWILHDW  249 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C----Ccceeccccccc-CC--CcCeEEEEeecccC
Confidence            68999999999999998884 44788888887 5555544443 2    277788888765 44  45799999998886


Q ss_pred             cchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         282 LFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       282 ~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .. ++..++|+++++.|+|||.+++-..
T Consensus       250 tD-edcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  250 TD-EDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             Ch-HHHHHHHHHHHHhCCCCCEEEEEec
Confidence            55 6789999999999999999885443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.98  E-value=3.6e-05  Score=70.93  Aligned_cols=95  Identities=20%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             HHHHHHHHhcccccCC-----CcceeeccCCCc-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhc-CCCCcEEEEE
Q psy8709         186 TESYKSAILNNKSLFN-----NKHVIDVGAGTG-ILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKN-KYDSQIEVYH  256 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~-----~~~VLDiGcGtG-~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~-g~~~~i~~i~  256 (319)
                      ...+..++.+.+....     .-++||||+|.. +..+..++ .+. +++|.|+++ .++.|++++..| ++.++|+++.
T Consensus        82 R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~  160 (299)
T PF05971_consen   82 RLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRK  160 (299)
T ss_dssp             HHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred             hHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence            3455555555544322     347999999966 44555555 454 999999999 999999999999 9999999986


Q ss_pred             cCccc-----cccCCCceeEEEeccchhhh
Q psy8709         257 KLLED-----VELPVESVDIIISEWMGYFL  281 (319)
Q Consensus       257 ~d~~~-----~~~~~~~fD~Iis~~~~~~l  281 (319)
                      ..-..     +..+.+.||+.+||+++|--
T Consensus       161 ~~~~~~i~~~i~~~~e~~dftmCNPPFy~s  190 (299)
T PF05971_consen  161 QKNPDNIFDGIIQPNERFDFTMCNPPFYSS  190 (299)
T ss_dssp             --ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred             cCCccccchhhhcccceeeEEecCCccccC
Confidence            64322     12234689999999998754

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG1709|consensus

Probab=97.95  E-value=4.9e-05  Score=66.10  Aligned_cols=100  Identities=24%  Similarity=0.323  Sum_probs=78.0

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC--CCcEEEEEcCcccc--ccCCCceeEEEe
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY--DSQIEVYHKLLEDV--ELPVESVDIIIS  274 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~--~~~i~~i~~d~~~~--~~~~~~fD~Iis  274 (319)
                      .+|.+||.||-|-|+...++.+++..+-+-|+..+ .+++.+.    .|.  ..+|.++.+..++.  .++++.||-|+-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~----~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y  175 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRD----WGWREKENVIILEGRWEDVLNTLPDKHFDGIYY  175 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHh----cccccccceEEEecchHhhhccccccCcceeEe
Confidence            67789999999999999999888766777889999 6655543    433  26888888888776  467889999997


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +...-   .-+++..+.+.+.++|||+|++-+
T Consensus       176 DTy~e---~yEdl~~~hqh~~rLLkP~gv~Sy  204 (271)
T KOG1709|consen  176 DTYSE---LYEDLRHFHQHVVRLLKPEGVFSY  204 (271)
T ss_pred             echhh---HHHHHHHHHHHHhhhcCCCceEEE
Confidence            64322   226778888899999999998753

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.95  E-value=8.1e-05  Score=67.98  Aligned_cols=106  Identities=13%  Similarity=0.172  Sum_probs=64.0

Q ss_pred             cceeeccCCCchHH-HHHHHc-C-CCEEEEEecHH-HHHHHHHHHH-hcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         203 KHVIDVGAGTGILS-IFAAQA-G-AAKVFAIEKSD-IAYETIDIIR-KNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       203 ~~VLDiGcGtG~ls-~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~-~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      .+|+=||||.=-++ +.+++. + ...|+++|+++ .++.+++.++ ..++..++.|+.+|..+.......||+|+....
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal  201 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL  201 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence            57888888865444 444442 3 34899999999 9999998887 557778999999999877655578999996543


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      -.  .......+++..+.+.++||..++.-..+
T Consensus       202 Vg--~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~  232 (276)
T PF03059_consen  202 VG--MDAEPKEEILEHLAKHMAPGARLVVRSAH  232 (276)
T ss_dssp             -S------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred             cc--cccchHHHHHHHHHhhCCCCcEEEEecch
Confidence            11  12246788999999999999998865443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.95  E-value=0.0001  Score=64.72  Aligned_cols=114  Identities=22%  Similarity=0.268  Sum_probs=80.4

Q ss_pred             HHHHHHHhcc---cccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         187 ESYKSAILNN---KSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       187 ~~~~~~i~~~---l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      .++...+++-   +++.++.+||-+|+.+|.....++.. + .+.|+|++.|+ ........++..   .|+--+.+|+.
T Consensus        56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr  132 (229)
T PF01269_consen   56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDAR  132 (229)
T ss_dssp             -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TT
T ss_pred             hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCC
Confidence            5555555443   56788999999999999998888883 4 56999999999 766666666655   58888899987


Q ss_pred             ccc---cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         261 DVE---LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       261 ~~~---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ...   .-.+.+|+|+++-.     ..+...-++.++...||+||.+++..
T Consensus       133 ~P~~Y~~lv~~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  133 HPEKYRMLVEMVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             SGGGGTTTS--EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChHHhhcccccccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence            542   22469999998754     22456677888889999999998654

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK10742 putative methyltransferase; Provisional

Probab=97.87  E-value=6.4e-05  Score=67.36  Aligned_cols=89  Identities=16%  Similarity=0.151  Sum_probs=68.3

Q ss_pred             HHHhcccccCCCc--ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc------C--CCCcEEEEEcCc
Q psy8709         191 SAILNNKSLFNNK--HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN------K--YDSQIEVYHKLL  259 (319)
Q Consensus       191 ~~i~~~l~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~------g--~~~~i~~i~~d~  259 (319)
                      +.+.+...+.++.  +|||+-+|+|..+..++..|+ +|+++|.++ +.....++++..      +  +..+++++++|.
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da  154 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence            3444555566666  899999999999999999988 599999999 777777777653      2  225789999998


Q ss_pred             ccccc-CCCceeEEEeccchhh
Q psy8709         260 EDVEL-PVESVDIIISEWMGYF  280 (319)
Q Consensus       260 ~~~~~-~~~~fD~Iis~~~~~~  280 (319)
                      .++-. ...+||+|+.++|+.+
T Consensus       155 ~~~L~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        155 LTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHHhhCCCCCcEEEECCCCCC
Confidence            76531 2247999999999754

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.87  E-value=4.2e-05  Score=63.07  Aligned_cols=74  Identities=19%  Similarity=0.285  Sum_probs=58.1

Q ss_pred             CCCcceeeccCCCchHHHHHHH-----cCCCEEEEEecHH-HHHHHHHHHHhcC--CCCcEEEEEcCccccccCCCceeE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQ-----AGAAKVFAIEKSD-IAYETIDIIRKNK--YDSQIEVYHKLLEDVELPVESVDI  271 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~-----~g~~~V~gvD~s~-~i~~a~~~~~~~g--~~~~i~~i~~d~~~~~~~~~~fD~  271 (319)
                      .+...|+|+|||.|+++..++.     ....+|+|+|.++ .++.+.+..+..+  +..+.++..+++..... ....++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  102 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI  102 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence            5567999999999999999998     5556999999999 8899988887776  44567777777665432 356677


Q ss_pred             EEe
Q psy8709         272 IIS  274 (319)
Q Consensus       272 Iis  274 (319)
                      ++.
T Consensus       103 ~vg  105 (141)
T PF13679_consen  103 LVG  105 (141)
T ss_pred             EEE
Confidence            774

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=3.5e-05  Score=65.84  Aligned_cols=44  Identities=39%  Similarity=0.555  Sum_probs=39.0

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .....++++|+|+|||||.+++.++.+|+.+|+++|+|+.....
T Consensus        40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei   83 (198)
T COG2263          40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEI   83 (198)
T ss_pred             HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHH
Confidence            45678999999999999999999999999999999999755444

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.82  E-value=4.5e-05  Score=66.68  Aligned_cols=101  Identities=17%  Similarity=0.175  Sum_probs=75.0

Q ss_pred             HHHHHHHHhcccccCC----CcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         186 TESYKSAILNNKSLFN----NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~----~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      ...+.+|+.......+    .-++|||||=+......  ..+.-.|+.||+++               ..-.+.+.|+.+
T Consensus        32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns---------------~~~~I~qqDFm~   94 (219)
T PF11968_consen   32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS---------------QHPGILQQDFME   94 (219)
T ss_pred             hHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCC---------------CCCCceeecccc
Confidence            3455555555443222    25999999975544332  33444799999998               234567888888


Q ss_pred             cccC---CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcE
Q psy8709         262 VELP---VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV  303 (319)
Q Consensus       262 ~~~~---~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~  303 (319)
                      .++|   .++||+|.+..+..++......-..+..++++|+|+|.
T Consensus        95 rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen   95 RPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             CCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            7764   57999999999999988888889999999999999999

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.81  E-value=0.00014  Score=66.79  Aligned_cols=118  Identities=17%  Similarity=0.171  Sum_probs=73.4

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV  266 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~  266 (319)
                      ...+...++.....+|||+|||.|.....+...  ...+++++|.|+ |++.++..+........... .........+.
T Consensus        22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~  100 (274)
T PF09243_consen   22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLYRDFLPF  100 (274)
T ss_pred             HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhhcccccC
Confidence            333444445556689999999999876665552  356899999999 99988887665432111111 11111111222


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ...|+|++..++.-+.. .....+++.+.+.+++ =.++++..|
T Consensus       101 ~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~-~LVlVEpGt  142 (274)
T PF09243_consen  101 PPDDLVIASYVLNELPS-AARAELVRSLWNKTAP-VLVLVEPGT  142 (274)
T ss_pred             CCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC-cEEEEcCCC
Confidence            34599998777666666 6677888888777766 333444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.80  E-value=0.00011  Score=68.52  Aligned_cols=114  Identities=11%  Similarity=0.086  Sum_probs=84.1

Q ss_pred             CcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHH--HH---hcCC-CCcEEEEEcCccccc-cCCCceeEE
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDI--IR---KNKY-DSQIEVYHKLLEDVE-LPVESVDII  272 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~--~~---~~g~-~~~i~~i~~d~~~~~-~~~~~fD~I  272 (319)
                      ..+||-+|.|.|...+.+.+.+ ..+++-+|++| |++.++.+  ++   .+.+ +++++++..|+.++- -..+.||.|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            3689999999999999999986 78999999999 99988843  22   2222 468999999987763 234689999


Q ss_pred             Eeccchhhhc--chhhHHHHHHHHhcccCCCcEEEeecCcceeec
Q psy8709         273 ISEWMGYFLL--FETMIDSVIDARNRFLKPDGVVCPNRFTLSLCG  315 (319)
Q Consensus       273 is~~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~  315 (319)
                      |.+.+-..-.  ..-.-.++..-+.+.|+++|.++++..+.|..|
T Consensus       370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp  414 (508)
T COG4262         370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP  414 (508)
T ss_pred             EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC
Confidence            9865321110  111124566778899999999999888777654

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.80  E-value=0.00019  Score=67.12  Aligned_cols=105  Identities=11%  Similarity=0.067  Sum_probs=71.6

Q ss_pred             CCcceeeccCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEE--EEcCcccc----ccC--C
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-----GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEV--YHKLLEDV----ELP--V  266 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-----g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~--i~~d~~~~----~~~--~  266 (319)
                      ++..++|+|||+|.-+..+.+.     ....++++|+|. +++.+.+.+....+ +.+++  +.+|..+.    +.+  .
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence            4468999999999887665552     134799999999 99999988874434 34444  88888653    111  1


Q ss_pred             CceeEEEecc-chhhhcchhhHHHHHHHHhc-ccCCCcEEEee
Q psy8709         267 ESVDIIISEW-MGYFLLFETMIDSVIDARNR-FLKPDGVVCPN  307 (319)
Q Consensus       267 ~~fD~Iis~~-~~~~l~~~~~~~~~l~~~~r-~LkpgG~li~~  307 (319)
                      ....+++.-+ ....+ .......+|+++++ .|+|||.|++.
T Consensus       155 ~~~r~~~flGSsiGNf-~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       155 SRPTTILWLGSSIGNF-SRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             CCccEEEEeCccccCC-CHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            2356666522 22222 23556789999999 99999999863

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.76  E-value=0.00017  Score=65.36  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=70.5

Q ss_pred             cceeeccCC--CchHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----------cC-
Q psy8709         203 KHVIDVGAG--TGILSIFAAQ--AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----------LP-  265 (319)
Q Consensus       203 ~~VLDiGcG--tG~ls~~la~--~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----------~~-  265 (319)
                      ...||+|||  |-......++  .+..+|+-+|.++ .+..++..+..+.- ....++.+|+.+..           +. 
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~  148 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF  148 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence            589999999  3345556665  4667999999999 88888888876632 34899999997642           11 


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ..++ .++...+.||+..++++..++......|.||.+|++++.|--.
T Consensus       149 ~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~  195 (267)
T PF04672_consen  149 DRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG  195 (267)
T ss_dssp             TS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred             CCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence            1333 4445567788888788999999999999999999999987543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.75  E-value=8.8e-05  Score=60.72  Aligned_cols=57  Identities=28%  Similarity=0.355  Sum_probs=48.4

Q ss_pred             ceeeccCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         204 HVIDVGAGTGILSIFAAQAGA-AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      +++|+|||.|..+..+++.+. .+++++|+++ +.+.++++++.+++ .+++++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEEeeeeC
Confidence            489999999999999998754 3899999999 99999999998887 468888766654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.00012  Score=64.86  Aligned_cols=107  Identities=21%  Similarity=0.226  Sum_probs=73.5

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEE-EcCccccccC
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVY-HKLLEDVELP  265 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i-~~d~~~~~~~  265 (319)
                      .+...+-..--..+++.+||+|+.||.++..+.+.|+++|+|+|... .+..-.   +.   .+++..+ ..++..+...
T Consensus        66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R~---d~rV~~~E~tN~r~l~~~  139 (245)
T COG1189          66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---RN---DPRVIVLERTNVRYLTPE  139 (245)
T ss_pred             HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---hc---CCcEEEEecCChhhCCHH
Confidence            33334333334556789999999999999999999999999999988 333221   11   1344443 3455544311


Q ss_pred             --CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         266 --VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       266 --~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                        .+..|+++++..+      -.+..+|..+..+++|+|.+++
T Consensus       140 ~~~~~~d~~v~DvSF------ISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         140 DFTEKPDLIVIDVSF------ISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             HcccCCCeEEEEeeh------hhHHHHHHHHHHhcCCCceEEE
Confidence              2478899987654      2457788899999999988773

>PTZ00357 methyltransferase; Provisional

Probab=97.67  E-value=0.00025  Score=71.01  Aligned_cols=115  Identities=23%  Similarity=0.253  Sum_probs=79.8

Q ss_pred             cceeeccCCCchHHHHHHHc----CC-CEEEEEecHH-HHHHHHHHH-HhcCC-------CCcEEEEEcCccccccCC--
Q psy8709         203 KHVIDVGAGTGILSIFAAQA----GA-AKVFAIEKSD-IAYETIDII-RKNKY-------DSQIEVYHKLLEDVELPV--  266 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~----g~-~~V~gvD~s~-~i~~a~~~~-~~~g~-------~~~i~~i~~d~~~~~~~~--  266 (319)
                      ..|+-+|+|-|-+-....+.    +. -+|++||.++ .+.....+. +....       .++|+++..|+..+..+.  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            36899999999876554442    32 3899999996 443333332 22222       346999999999885431  


Q ss_pred             ---------CceeEEEeccchhhhcchhhHHHHHHHHhcccCC----Cc-------EEEeecCcceeecccc
Q psy8709         267 ---------ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKP----DG-------VVCPNRFTLSLCGAYA  318 (319)
Q Consensus       267 ---------~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~Lkp----gG-------~li~~~~t~~~~~~~~  318 (319)
                               +++|+|||+..+.|-.. +.-++.|..+.+.||+    +|       +.||...|-|++|+++
T Consensus       782 ~s~~~P~~~gKaDIVVSELLGSFGDN-ELSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISS  852 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSELLGSLGDN-ELSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMS  852 (1072)
T ss_pred             ccccccccccccceehHhhhcccccc-cCCHHHHHHHHHhhhhhccccccccCCcceecchhhhhhcccccc
Confidence                     37999999987765333 3345677777777765    55       5899999999999874

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.65  E-value=0.00027  Score=61.85  Aligned_cols=92  Identities=23%  Similarity=0.256  Sum_probs=74.9

Q ss_pred             cceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709         203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF  280 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~  280 (319)
                      .++.|+||--++++.++.+. ....+++.|+++ -++.|.+++.++++.+++++..+|....--++..+|+|+..+|+-.
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG~   97 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGGT   97 (226)
T ss_pred             CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcHH
Confidence            46999999999999999985 567999999999 9999999999999999999999998655444568999998887653


Q ss_pred             hcchhhHHHHHHHHhcccC
Q psy8709         281 LLFETMIDSVIDARNRFLK  299 (319)
Q Consensus       281 l~~~~~~~~~l~~~~r~Lk  299 (319)
                      +     +..+|.+-.+.|+
T Consensus        98 l-----I~~ILee~~~~l~  111 (226)
T COG2384          98 L-----IREILEEGKEKLK  111 (226)
T ss_pred             H-----HHHHHHHhhhhhc
Confidence            3     4455555555554

>KOG4058|consensus

Probab=97.51  E-value=0.00065  Score=55.78  Aligned_cols=110  Identities=16%  Similarity=0.137  Sum_probs=79.0

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      -.+.+++.+...+..+.+|+|+|.|..-..+++.|...-+|+++++ .+..++-..-..|......|...|+-...+.+-
T Consensus        60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy  139 (199)
T KOG4058|consen   60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY  139 (199)
T ss_pred             HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence            3444566666677679999999999999999999877999999999 888887776677787888899989877776543


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      .+-+|+-        -++....+-.++..-+..|..++-
T Consensus       140 ~~vviFg--------aes~m~dLe~KL~~E~p~nt~vva  170 (199)
T KOG4058|consen  140 RNVVIFG--------AESVMPDLEDKLRTELPANTRVVA  170 (199)
T ss_pred             ceEEEee--------hHHHHhhhHHHHHhhCcCCCeEEE
Confidence            4444432        223344444445555666666663

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00086  Score=57.96  Aligned_cols=113  Identities=24%  Similarity=0.297  Sum_probs=85.8

Q ss_pred             HHHHHHHhcc---cccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         187 ESYKSAILNN---KSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       187 ~~~~~~i~~~---l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      .++...+++-   +++.++.+||=+|+.+|......+. .+.+.++|++.|+ ........+.+.   +|+--+.+|+..
T Consensus        59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~  135 (231)
T COG1889          59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK  135 (231)
T ss_pred             hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC
Confidence            5566666554   4578889999999999999888888 4667899999999 777777766664   578888888865


Q ss_pred             cc---cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         262 VE---LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       262 ~~---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ..   .-.+.+|+|+.+-.     .....+-+..++...||+||.+++.
T Consensus       136 P~~Y~~~Ve~VDviy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i~  179 (231)
T COG1889         136 PEKYRHLVEKVDVIYQDVA-----QPNQAEILADNAEFFLKKGGYVVIA  179 (231)
T ss_pred             cHHhhhhcccccEEEEecC-----CchHHHHHHHHHHHhcccCCeEEEE
Confidence            42   22468999997653     2244566788889999999977654

>KOG3201|consensus

Probab=97.47  E-value=0.00019  Score=59.79  Aligned_cols=122  Identities=19%  Similarity=0.291  Sum_probs=81.7

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCC--CcEEEEEcCc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYD--SQIEVYHKLL  259 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~--~~i~~i~~d~  259 (319)
                      ..+.+.-.++.......+..||++|.| +|..+..++. .+...|.-.|-+. .++..++....|...  .++.++..+.
T Consensus        13 seeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~   92 (201)
T KOG3201|consen   13 SEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLI   92 (201)
T ss_pred             cHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHH
Confidence            345566667777777778899999999 6666666665 4667999999999 777777766655221  2333333222


Q ss_pred             ccc--ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         260 EDV--ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       260 ~~~--~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ..-  ......||+|++.-..+   ..+....+.+.++.+|+|.|..++..+
T Consensus        93 ~~aqsq~eq~tFDiIlaADClF---fdE~h~sLvdtIk~lL~p~g~Al~fsP  141 (201)
T KOG3201|consen   93 WGAQSQQEQHTFDIILAADCLF---FDEHHESLVDTIKSLLRPSGRALLFSP  141 (201)
T ss_pred             hhhHHHHhhCcccEEEeccchh---HHHHHHHHHHHHHHHhCcccceeEecC
Confidence            221  12235899999865433   335567788889999999998765544

>KOG4589|consensus

Probab=97.45  E-value=0.00056  Score=58.36  Aligned_cols=98  Identities=22%  Similarity=0.272  Sum_probs=66.1

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEc-Ccccc--------ccCCC
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHK-LLEDV--------ELPVE  267 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~-d~~~~--------~~~~~  267 (319)
                      +.++.+|||+||..|.++..+.+.  +.+.|.|||+-..          .. ...+.++.+ |+.+.        .+|..
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----------~p-~~Ga~~i~~~dvtdp~~~~ki~e~lp~r  135 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----------EP-PEGATIIQGNDVTDPETYRKIFEALPNR  135 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----------cC-CCCcccccccccCCHHHHHHHHHhCCCC
Confidence            456789999999999999998884  6779999999871          01 134555665 66543        25678


Q ss_pred             ceeEEEeccchhh----h----cchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         268 SVDIIISEWMGYF----L----LFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       268 ~fD~Iis~~~~~~----l----~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ++|+|+|+..-..    .    ...+....++.-....++|+|.++.-
T Consensus       136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK  183 (232)
T KOG4589|consen  136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK  183 (232)
T ss_pred             cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence            9999999753221    1    11122334455556788999998853

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.45  E-value=0.00031  Score=63.62  Aligned_cols=108  Identities=17%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc----------------CCC-----------Cc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN----------------KYD-----------SQ  251 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~----------------g~~-----------~~  251 (319)
                      .++.++||||||.-......+..-+.+++..|.++ ..+..++-++..                |..           ..
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            34679999999987665444444467899999998 666555544332                110           12


Q ss_pred             E-EEEEcCccccc-cCC-----CceeEEEeccchhhh-cchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         252 I-EVYHKLLEDVE-LPV-----ESVDIIISEWMGYFL-LFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       252 i-~~i~~d~~~~~-~~~-----~~fD~Iis~~~~~~l-~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      | .++..|+...+ ++.     ++||+|++....-.. ...+.....++++.++|||||.|++.
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~  198 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA  198 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            3 36778887653 211     359999986644332 34567888999999999999999953

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.44  E-value=0.00057  Score=56.03  Aligned_cols=83  Identities=19%  Similarity=0.298  Sum_probs=58.6

Q ss_pred             EEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc--CCCceeEEEeccchhhhcc-------hhhHHHHHHHHh
Q psy8709         226 KVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL--PVESVDIIISEWMGYFLLF-------ETMIDSVIDARN  295 (319)
Q Consensus       226 ~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~--~~~~fD~Iis~~~~~~l~~-------~~~~~~~l~~~~  295 (319)
                      +|+|+|+.+ +++.+++++++.++.++++++..+-+++..  +.+++|+++.|. +|....       .+.--..++.+.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            699999999 999999999999998899999999888752  334899999874 232111       122345678888


Q ss_pred             cccCCCcEEEeecC
Q psy8709         296 RFLKPDGVVCPNRF  309 (319)
Q Consensus       296 r~LkpgG~li~~~~  309 (319)
                      ++|+|||++.+...
T Consensus        80 ~lL~~gG~i~iv~Y   93 (140)
T PF06962_consen   80 ELLKPGGIITIVVY   93 (140)
T ss_dssp             HHEEEEEEEEEEE-
T ss_pred             HhhccCCEEEEEEe
Confidence            99999999986543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2352|consensus

Probab=97.39  E-value=0.00063  Score=65.99  Aligned_cols=103  Identities=18%  Similarity=0.250  Sum_probs=80.9

Q ss_pred             ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhhc
Q psy8709         204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLL  282 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~  282 (319)
                      ++|-+|||.-.++..+-+.|...++.+|.|+ .+.........  -..-..+...|+..+.+++++||+|+--+.++.+.
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~  128 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF  128 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence            8999999999999999999999999999999 66555433321  22568899999999999999999999877665543


Q ss_pred             ch-------hhHHHHHHHHhcccCCCcEEEeec
Q psy8709         283 FE-------TMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       283 ~~-------~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ..       ......+.+++|+|+|||+++.-+
T Consensus       129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence            22       124566889999999999976433

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.36  E-value=0.0006  Score=60.74  Aligned_cols=87  Identities=23%  Similarity=0.219  Sum_probs=51.4

Q ss_pred             HhcccccCCCc--ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HH---HHHHHHHHhcCCC-----CcEEEEEcCccc
Q psy8709         193 ILNNKSLFNNK--HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IA---YETIDIIRKNKYD-----SQIEVYHKLLED  261 (319)
Q Consensus       193 i~~~l~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i---~~a~~~~~~~g~~-----~~i~~i~~d~~~  261 (319)
                      +.....+.++.  +|||.-+|-|.-+..++..|+ +|+++|-|+ +.   ..+.++.......     .+++++++|..+
T Consensus        65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~  143 (234)
T PF04445_consen   65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE  143 (234)
T ss_dssp             HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred             HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence            33334445543  899999999999999998876 899999999 43   3333444433221     489999999877


Q ss_pred             c-ccCCCceeEEEeccchhh
Q psy8709         262 V-ELPVESVDIIISEWMGYF  280 (319)
Q Consensus       262 ~-~~~~~~fD~Iis~~~~~~  280 (319)
                      + ..+..+||+|..++|+..
T Consensus       144 ~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  144 YLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             HCCCHSS--SEEEE--S---
T ss_pred             HHhhcCCCCCEEEECCCCCC
Confidence            5 345689999999999754

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.32  E-value=0.0011  Score=61.61  Aligned_cols=86  Identities=14%  Similarity=0.192  Sum_probs=69.0

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---  263 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---  263 (319)
                      +.+.+++.+...++..++|.-+|.|..+..+++. +..+|+|+|.++ +++.+++.+...  ..+++++++++.++.   
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l   85 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL   85 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence            4555666677778889999999999999999985 447999999999 999998887654  368999999998763   


Q ss_pred             --cCCCceeEEEecc
Q psy8709         264 --LPVESVDIIISEW  276 (319)
Q Consensus       264 --~~~~~fD~Iis~~  276 (319)
                        .+..++|.|+.+.
T Consensus        86 ~~~~~~~vDgIl~DL  100 (305)
T TIGR00006        86 DELLVTKIDGILVDL  100 (305)
T ss_pred             HhcCCCcccEEEEec
Confidence              2335799998763

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>TIGR00452 methyltransferase, putative

Probab=97.31  E-value=0.00063  Score=63.59  Aligned_cols=66  Identities=18%  Similarity=0.235  Sum_probs=47.7

Q ss_pred             chhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         119 DAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       119 ~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .+..+...+.-+.|.+.-...+..+....++++|||+|||+|.+.+.++..|+..|+|+|.+....
T Consensus        92 ~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml  157 (314)
T TIGR00452        92 PFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFL  157 (314)
T ss_pred             CcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH
Confidence            333444445444554444444555666788999999999999999988888988999999876543

Known examples to date are restricted to the proteobacteria.

>KOG1499|consensus

Probab=97.28  E-value=0.0002  Score=66.68  Aligned_cols=31  Identities=65%  Similarity=1.001  Sum_probs=29.0

Q ss_pred             EEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         153 IDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      ||+|||||++++++|+.||++|+|++.....
T Consensus        65 lDVGcGtGILS~F~akAGA~~V~aVe~S~ia   95 (346)
T KOG1499|consen   65 LDVGCGTGILSMFAAKAGARKVYAVEASSIA   95 (346)
T ss_pred             EEcCCCccHHHHHHHHhCcceEEEEechHHH
Confidence            7999999999999999999999999987654

>KOG2899|consensus

Probab=97.22  E-value=0.00039  Score=61.64  Aligned_cols=47  Identities=21%  Similarity=0.458  Sum_probs=41.3

Q ss_pred             cCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHh
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRK  245 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~  245 (319)
                      ...+..+|||||..|.++..+++ .+...|.|+|+++ .++.|++.++.
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            44557999999999999999999 4788999999999 99999987754

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.20  E-value=0.00043  Score=53.95  Aligned_cols=39  Identities=33%  Similarity=0.452  Sum_probs=32.7

Q ss_pred             CCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~  186 (319)
                      |+.+|||+|||+|.+++.+++ ....+++++|.++.....
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~   40 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEI   40 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHH
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence            578999999999999999997 577789999998654433

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.18  E-value=0.00038  Score=61.80  Aligned_cols=43  Identities=40%  Similarity=0.543  Sum_probs=37.7

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYK  190 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~  190 (319)
                      +++.+|||+|||-|+++..+|+.| ..|+|+|++...+......
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~h  100 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLH  100 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHh
Confidence            799999999999999999999999 8999999987666654433

>KOG2671|consensus

Probab=97.17  E-value=0.00048  Score=63.90  Aligned_cols=111  Identities=17%  Similarity=0.073  Sum_probs=81.9

Q ss_pred             cccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHH-------HHHHHHHhcCCC-CcEEEEEcCccccccC
Q psy8709         195 NNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAY-------ETIDIIRKNKYD-SQIEVYHKLLEDVELP  265 (319)
Q Consensus       195 ~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~-------~a~~~~~~~g~~-~~i~~i~~d~~~~~~~  265 (319)
                      +.....+|+.|.|.-.|||.+...++..|+ .|+|.|++- ++.       ....|+++.|.. .-+.++.+|..+-++.
T Consensus       202 N~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r  280 (421)
T KOG2671|consen  202 NQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR  280 (421)
T ss_pred             hhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh
Confidence            334567789999999999999999999987 999999999 665       234566666643 3456788888876643


Q ss_pred             -CCceeEEEeccchhhhcc------------------------------hhhHHHHHHHHhcccCCCcEEEe
Q psy8709         266 -VESVDIIISEWMGYFLLF------------------------------ETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       266 -~~~fD~Iis~~~~~~l~~------------------------------~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                       ...||.|+|++++..-..                              ...+..+|.-..+.|..||++++
T Consensus       281 sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~  352 (421)
T KOG2671|consen  281 SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF  352 (421)
T ss_pred             hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence             468999999998532100                              12345567777899999999884

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.16  E-value=0.00084  Score=59.87  Aligned_cols=46  Identities=35%  Similarity=0.411  Sum_probs=38.2

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ..++......++++++||+|||+|.++..+++.|+.+|+|+|++..
T Consensus        64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~  109 (228)
T TIGR00478        64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYN  109 (228)
T ss_pred             HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHH
Confidence            3344444445799999999999999999999999999999999853

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.12  E-value=0.0018  Score=62.07  Aligned_cols=102  Identities=23%  Similarity=0.203  Sum_probs=76.8

Q ss_pred             cceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCC-cEEEEEcCccccc-cCCCceeEEEeccc
Q psy8709         203 KHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDS-QIEVYHKLLEDVE-LPVESVDIIISEWM  277 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~-~i~~i~~d~~~~~-~~~~~fD~Iis~~~  277 (319)
                      -++||.=+|+|.=++..+..  +..+|+.-|+|+ .++..++|++.|++.+ ++++.+.|+..+- .....||+|=.++.
T Consensus        51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDPf  130 (377)
T PF02005_consen   51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDPF  130 (377)
T ss_dssp             EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--S
T ss_pred             ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCCC
Confidence            58999999999998887774  667999999999 9999999999999977 6999999987653 24578999998776


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +       .+..+|..+.+.++.||+|.++....
T Consensus       131 G-------Sp~pfldsA~~~v~~gGll~vTaTD~  157 (377)
T PF02005_consen  131 G-------SPAPFLDSALQAVKDGGLLCVTATDT  157 (377)
T ss_dssp             S---------HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred             C-------CccHhHHHHHHHhhcCCEEEEecccc
Confidence            4       34567788888999999999876544

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG2798|consensus

Probab=97.08  E-value=0.0022  Score=59.00  Aligned_cols=100  Identities=24%  Similarity=0.212  Sum_probs=65.3

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCC------------------------------
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDS------------------------------  250 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~------------------------------  250 (319)
                      .-+||-.|||.|+++..++..|. .+-|-+.|- |+-...=.+..-...+                              
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            45899999999999999999987 778889998 6533221121000001                              


Q ss_pred             ---------cEEEEEcCcccccc---CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         251 ---------QIEVYHKLLEDVEL---PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       251 ---------~i~~i~~d~~~~~~---~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                               ....-.||+.+.--   ..+.||+|+..   +++....+.-..+..+.++|||||+.+
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc---fFIDTa~NileYi~tI~~iLk~GGvWi  293 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC---FFIDTAHNILEYIDTIYKILKPGGVWI  293 (369)
T ss_pred             ccccCCCCCCccccccceeEEecCcCCCCccceEEEE---EEeechHHHHHHHHHHHHhccCCcEEE
Confidence                     11112234333211   12469999965   345555778889999999999999877

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.05  E-value=0.0017  Score=55.75  Aligned_cols=116  Identities=21%  Similarity=0.187  Sum_probs=78.3

Q ss_pred             HhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHHHHH-------HHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAY-------ETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~i~-------~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ++....+.++.+|+|+=.|.|.++..++..  +.+.|++.-..+...       ......++.. ..|++.+..+...+.
T Consensus        40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-~aN~e~~~~~~~A~~  118 (238)
T COG4798          40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-YANVEVIGKPLVALG  118 (238)
T ss_pred             eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-hhhhhhhCCcccccC
Confidence            344567788999999999999999999884  334788876665211       1111122222 256666666666666


Q ss_pred             cCCCceeEEEeccchhhhc----chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 LPVESVDIIISEWMGYFLL----FETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~----~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                       +.+..|+++.+...|-++    +.....++..++++.|||||++.+....
T Consensus       119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~  168 (238)
T COG4798         119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR  168 (238)
T ss_pred             -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence             446788888765544432    3456788999999999999999866543

>KOG1500|consensus

Probab=97.01  E-value=0.00053  Score=63.43  Aligned_cols=37  Identities=57%  Similarity=0.812  Sum_probs=31.6

Q ss_pred             EEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHH
Q psy8709         153 IDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESY  189 (319)
Q Consensus       153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~  189 (319)
                      +|+|||+|+++++|++.|+++||+++.+......+.+
T Consensus       182 lDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~L  218 (517)
T KOG1500|consen  182 LDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKL  218 (517)
T ss_pred             EEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHH
Confidence            6999999999999999999999999988655544443

>KOG2198|consensus

Probab=96.93  E-value=0.0049  Score=57.96  Aligned_cols=115  Identities=12%  Similarity=0.029  Sum_probs=78.1

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcCC-----CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-------
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAGA-----AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-------  263 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g~-----~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-------  263 (319)
                      ++..++.+|||+.+..|.-+..+.+...     ..|++-|.++ -+......+.... ..++.+...++...+       
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccC
Confidence            5677889999999999999988877421     2799999998 6666555553322 245555555543332       


Q ss_pred             --cCCCceeEEEeccchhh--h-c-----------------chhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         264 --LPVESVDIIISEWMGYF--L-L-----------------FETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       264 --~~~~~fD~Iis~~~~~~--l-~-----------------~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                        .....||-|+++.+...  . .                 -....-.++.+..++||+||.++.++|++.
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn  300 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN  300 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence              12357999998754321  0 0                 011234578888899999999999999975

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=96.92  E-value=0.034  Score=47.70  Aligned_cols=56  Identities=43%  Similarity=0.522  Sum_probs=41.4

Q ss_pred             hhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCccc
Q psy8709         125 EMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       125 ~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~  185 (319)
                      .++++.+|......     ....++.+|||+|||+|.+++.+++.+ ..+++++|.++....
T Consensus        13 ~~~~~~~r~~~~~~-----l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~   69 (187)
T PRK08287         13 PMTKEEVRALALSK-----LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALR   69 (187)
T ss_pred             CCchHHHHHHHHHh-----cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            46666666433322     345688899999999999999988654 679999999875443

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=96.91  E-value=0.0017  Score=55.93  Aligned_cols=38  Identities=32%  Similarity=0.475  Sum_probs=31.8

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~  184 (319)
                      .++++|||+|||+|.+++.++..+ ..+|+++|.+....
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~   79 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV   79 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH
Confidence            358999999999999999988655 67899999986544

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.90  E-value=0.016  Score=51.69  Aligned_cols=124  Identities=14%  Similarity=0.078  Sum_probs=68.3

Q ss_pred             ecCCCcccHHHHHHHHh--cccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEE
Q psy8709         178 EKSGTPIRTESYKSAIL--NNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIE  253 (319)
Q Consensus       178 d~d~~~~~~~~~~~~i~--~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~  253 (319)
                      ++|....+.+....++.  ..-....|++||-+|=+.- .|+.++- ...++|+.+|+++ +++...+.+++.|+  +++
T Consensus        19 ~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~   95 (243)
T PF01861_consen   19 ELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIE   95 (243)
T ss_dssp             GGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EE
T ss_pred             ccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceE
Confidence            34444444444433332  2233456789999985543 2333333 3456999999999 99999999999998  499


Q ss_pred             EEEcCccccccC---CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCc-EEEeecC
Q psy8709         254 VYHKLLEDVELP---VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG-VVCPNRF  309 (319)
Q Consensus       254 ~i~~d~~~~~~~---~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG-~li~~~~  309 (319)
                      .++.|+.+. +|   .++||+++++++.    ..+.+.-++......||..| ..++...
T Consensus        96 ~~~~DlR~~-LP~~~~~~fD~f~TDPPy----T~~G~~LFlsRgi~~Lk~~g~~gy~~~~  150 (243)
T PF01861_consen   96 AVHYDLRDP-LPEELRGKFDVFFTDPPY----TPEGLKLFLSRGIEALKGEGCAGYFGFT  150 (243)
T ss_dssp             EE---TTS----TTTSS-BSEEEE---S----SHHHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred             EEEeccccc-CCHHHhcCCCEEEeCCCC----CHHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence            999999874 33   3799999999984    23667888888888998755 5454433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PHA01634 hypothetical protein

Probab=96.85  E-value=0.0039  Score=49.98  Aligned_cols=71  Identities=18%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      ++++|+|||++-|.-++.++-.|+++|+++++++ ..+..+++++.+..-++..- .++   .+-.-+.||+.+..
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~-~~e---W~~~Y~~~Di~~iD   99 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVM-KGE---WNGEYEDVDIFVMD   99 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceee-ccc---ccccCCCcceEEEE
Confidence            4689999999999999999999999999999999 88888888877644332221 112   22123567777643

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.85  E-value=0.0011  Score=61.21  Aligned_cols=41  Identities=46%  Similarity=0.669  Sum_probs=35.8

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++++|||+|||+|.+++.+++.|+.+++++|+++.....
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~  197 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES  197 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence            34789999999999999999999999999999999765544

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=96.85  E-value=0.0019  Score=60.73  Aligned_cols=44  Identities=32%  Similarity=0.364  Sum_probs=36.4

Q ss_pred             HhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         141 LNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       141 ~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .......++++|||+|||+|.+++.++..|+..|+|+|.+....
T Consensus       115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l  158 (322)
T PRK15068        115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFL  158 (322)
T ss_pred             HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH
Confidence            33445578999999999999999999988988999999775443

>KOG1270|consensus

Probab=96.81  E-value=0.0019  Score=58.07  Aligned_cols=44  Identities=30%  Similarity=0.412  Sum_probs=36.3

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYK  190 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~  190 (319)
                      .+.|+.|||+|||+|+++...|+.| +.|.|+|..+..+...+..
T Consensus        87 ~~~g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h  130 (282)
T KOG1270|consen   87 PLLGMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEH  130 (282)
T ss_pred             ccCCceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHh
Confidence            3445899999999999999999999 7899999987666655444

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.76  E-value=0.0022  Score=59.06  Aligned_cols=54  Identities=24%  Similarity=0.234  Sum_probs=42.3

Q ss_pred             HhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHh
Q psy8709         141 LNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAIL  194 (319)
Q Consensus       141 ~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~  194 (319)
                      ..+...+.|++|||+|||+|..++.++..||+.|.|+|-+......-...+.++
T Consensus       108 ~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~l  161 (315)
T PF08003_consen  108 LPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFL  161 (315)
T ss_pred             HhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHh
Confidence            344456899999999999999999999999999999998766555533333333

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.76  E-value=0.0013  Score=59.42  Aligned_cols=41  Identities=41%  Similarity=0.690  Sum_probs=35.6

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++++|||+|||+|.+++.+++.|+.+++++|+++.....
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~  157 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEA  157 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence            45789999999999999999999998889999998765544

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.74  E-value=0.054  Score=46.88  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=34.4

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCccc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIR  185 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~  185 (319)
                      ....++.+|||+|||+|.+++.+++. ...+++++|.++....
T Consensus        36 l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~   78 (196)
T PRK07402         36 LRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVN   78 (196)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            45568899999999999999988855 4689999999865544

>KOG3987|consensus

Probab=96.73  E-value=0.00061  Score=59.05  Aligned_cols=92  Identities=21%  Similarity=0.215  Sum_probs=62.7

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL  281 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l  281 (319)
                      .++||+|+|.|..+..++.. ..+|++.+.|. |..+.    +..+.  ++  +.  ..+..-.+-+||+|.|-..   +
T Consensus       114 ~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL----~kk~y--nV--l~--~~ew~~t~~k~dli~clNl---L  179 (288)
T KOG3987|consen  114 VTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRL----KKKNY--NV--LT--EIEWLQTDVKLDLILCLNL---L  179 (288)
T ss_pred             eeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHH----hhcCC--ce--ee--ehhhhhcCceeehHHHHHH---H
Confidence            68999999999999888876 45899999999 65544    34433  22  11  1111112347999997333   2


Q ss_pred             cchhhHHHHHHHHhcccCC-CcEEEeec
Q psy8709         282 LFETMIDSVIDARNRFLKP-DGVVCPNR  308 (319)
Q Consensus       282 ~~~~~~~~~l~~~~r~Lkp-gG~li~~~  308 (319)
                      ..-.++-++|+.++.+|+| +|.+++.-
T Consensus       180 DRc~~p~kLL~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  180 DRCFDPFKLLEDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             HhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence            2234567889999999999 89887543

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.71  E-value=0.0019  Score=63.05  Aligned_cols=101  Identities=18%  Similarity=0.253  Sum_probs=65.6

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL  281 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l  281 (319)
                      .+|+|..+|.|.++..+.+.+.   ...-.-+ .-.-....+-..|+   |-..+.=.+.++.-...||+|.++.++...
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~V---WVMNVVP~~~~ntL~vIydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~~  440 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPV---WVMNVVPVSGPNTLPVIYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFSLY  440 (506)
T ss_pred             eeeeeecccccHHHHHhccCCc---eEEEecccCCCCcchhhhhccc---chhccchhhccCCCCcchhheehhhhhhhh
Confidence            5899999999999999988753   2222222 11112233444554   222222223333333899999998766555


Q ss_pred             cchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         282 LFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       282 ~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ...-.+..++-++.|+|+|||.+++...
T Consensus       441 ~~rC~~~~illEmDRILRP~G~~iiRD~  468 (506)
T PF03141_consen  441 KDRCEMEDILLEMDRILRPGGWVIIRDT  468 (506)
T ss_pred             cccccHHHHHHHhHhhcCCCceEEEecc
Confidence            5555688999999999999999998543

; GO: 0008168 methyltransferase activity

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.70  E-value=0.013  Score=58.19  Aligned_cols=122  Identities=12%  Similarity=-0.004  Sum_probs=86.9

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEE
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G----AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYH  256 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g----~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~  256 (319)
                      -.+...+.+.+...+...+..+|.|..||+|.+.....+. +    ...++|.|+++ ....|+-++--+|....+....
T Consensus       168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~  247 (489)
T COG0286         168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRH  247 (489)
T ss_pred             cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccc
Confidence            3455777788888877767779999999999887766653 1    25799999999 8888888888888743456666


Q ss_pred             cCccccccC-----CCceeEEEeccchh---hhc------------------c-hhhHHHHHHHHhcccCCCcEE
Q psy8709         257 KLLEDVELP-----VESVDIIISEWMGY---FLL------------------F-ETMIDSVIDARNRFLKPDGVV  304 (319)
Q Consensus       257 ~d~~~~~~~-----~~~fD~Iis~~~~~---~l~------------------~-~~~~~~~l~~~~r~LkpgG~l  304 (319)
                      +|...-+..     .+.||.|++|+++.   |..                  . ......++..+...|+|||+.
T Consensus       248 ~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~a  322 (489)
T COG0286         248 GDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRA  322 (489)
T ss_pred             cccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceE
Confidence            665443322     36799999999875   110                  0 112266788888999998743

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.65  E-value=0.014  Score=52.34  Aligned_cols=120  Identities=17%  Similarity=0.066  Sum_probs=71.6

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      -+.+.+.++...+.  ..+|+|+|||.--++...... +...++|+|++. +++.....+...+.  +..+...|...-+
T Consensus        92 Ld~fY~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~  167 (251)
T PF07091_consen   92 LDEFYDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP  167 (251)
T ss_dssp             HHHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH
T ss_pred             HHHHHHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC
Confidence            46777777775433  579999999999888876664 345999999999 99999888888776  5566666776543


Q ss_pred             cCCCceeEEEeccchhhhcchh--hHHHHHHHHhcccCCCcEEEeecCcceeec
Q psy8709         264 LPVESVDIIISEWMGYFLLFET--MIDSVIDARNRFLKPDGVVCPNRFTLSLCG  315 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~t~~~~~  315 (319)
                       +....|+.+.--+.+.+....  .-..+++++.   .  =.++++.++-.+.+
T Consensus       168 -~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~---~--~~~vVSfPtrSL~g  215 (251)
T PF07091_consen  168 -PKEPADLALLLKTLPCLERQRRGAGLELLDALR---S--PHVVVSFPTRSLGG  215 (251)
T ss_dssp             -TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC---E--SEEEEEEES-----
T ss_pred             -CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC---C--CeEEEecccccccc
Confidence             447899998644444442211  1122333322   1  25666766665543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.61  E-value=0.0048  Score=53.63  Aligned_cols=56  Identities=29%  Similarity=0.519  Sum_probs=44.5

Q ss_pred             hhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCccc
Q psy8709         125 EMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       125 ~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~  185 (319)
                      .|++.++|......     ..+.++.++||+|||+|.+++.+++. + ..+++++|.++....
T Consensus        22 ~~t~~~~r~~~l~~-----l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~   79 (198)
T PRK00377         22 PMTKEEIRALALSK-----LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAIN   79 (198)
T ss_pred             CCCHHHHHHHHHHH-----cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence            57877887666544     56789999999999999999999854 4 578999999865544

>KOG1227|consensus

Probab=96.56  E-value=0.0013  Score=60.12  Aligned_cols=73  Identities=21%  Similarity=0.210  Sum_probs=62.5

Q ss_pred             CcceeeccCCCchHHH-HHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         202 NKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~-~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      +..|+|+-+|.|+++. ++..+|++.|+++|.+| .++..+++++.|+..++..++.+|-.... +....|.|...
T Consensus       195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-~~~~AdrVnLG  269 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-PRLRADRVNLG  269 (351)
T ss_pred             cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-ccccchheeec
Confidence            4799999999999999 88889999999999999 99999999999988777788888877654 34678888743

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.55  E-value=0.008  Score=52.55  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=55.2

Q ss_pred             CCcceeeccCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-------c-CC
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-----GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-------L-PV  266 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-----g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-------~-~~  266 (319)
                      +...|+|+|.-.|.-+.+.|..     +.++|+|+|+.- .  ..++....+.+.++|++++||..+..       . ..
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~  109 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP  109 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hchHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence            3479999999999887776652     457999999954 1  11222334555689999999987652       1 12


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ....+|+-+..+.+    ......|+....++++|+++++...
T Consensus       110 ~~~vlVilDs~H~~----~hvl~eL~~y~plv~~G~Y~IVeDt  148 (206)
T PF04989_consen  110 PHPVLVILDSSHTH----EHVLAELEAYAPLVSPGSYLIVEDT  148 (206)
T ss_dssp             -SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred             CCceEEEECCCccH----HHHHHHHHHhCccCCCCCEEEEEec
Confidence            34557776554221    3345566778899999999986544

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.55  E-value=0.0013  Score=56.70  Aligned_cols=49  Identities=35%  Similarity=0.478  Sum_probs=43.8

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         134 ESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       134 ~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ....+.+..++....+|+|||+|+|+|+.++.+++.|++.+.+.|+++.
T Consensus        65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~  113 (218)
T COG3897          65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW  113 (218)
T ss_pred             HHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChH
Confidence            3445677789999999999999999999999999999999999999843

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=96.53  E-value=0.0065  Score=57.06  Aligned_cols=40  Identities=30%  Similarity=0.499  Sum_probs=32.4

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .+++.+|||+|||+|.++...++.| ..|+|+|.+......
T Consensus       129 ~~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~  168 (322)
T PLN02396        129 PFEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKI  168 (322)
T ss_pred             CCCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHH
Confidence            3578899999999999999888765 579999998654433

>KOG3420|consensus

Probab=96.52  E-value=0.002  Score=52.93  Aligned_cols=51  Identities=22%  Similarity=0.304  Sum_probs=43.5

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         136 YKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       136 ~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ...-|+.....++|+.++|+|||.|.+++..+.+++..+.|+|+++.+...
T Consensus        36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEI   86 (185)
T KOG3420|consen   36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEI   86 (185)
T ss_pred             HHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHH
Confidence            344566677789999999999999999998999999999999999865443

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=96.52  E-value=0.0061  Score=51.70  Aligned_cols=50  Identities=24%  Similarity=0.440  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCc-eEEeeecCCCcccH
Q psy8709         133 TESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAA-KVFAIEKSGTPIRT  186 (319)
Q Consensus       133 ~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~-~V~avd~d~~~~~~  186 (319)
                      +......+..+    +++++||+|||+|.+++.+++.++. +++++|++......
T Consensus        20 t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~   70 (170)
T PF05175_consen   20 TRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALEL   70 (170)
T ss_dssp             HHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHH
T ss_pred             HHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHH
Confidence            33444444443    7789999999999999999987755 89999998654443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=96.49  E-value=0.0062  Score=53.69  Aligned_cols=39  Identities=41%  Similarity=0.568  Sum_probs=32.4

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ..+++++||+|||+|.++...+..+ ..++|+|+++....
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~   91 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQ   91 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHH
Confidence            5678999999999999999888765 48999999865443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>KOG1596|consensus

Probab=96.44  E-value=0.011  Score=52.53  Aligned_cols=107  Identities=20%  Similarity=0.196  Sum_probs=73.4

Q ss_pred             cccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---cCCCc
Q psy8709         195 NNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---LPVES  268 (319)
Q Consensus       195 ~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---~~~~~  268 (319)
                      +++.+.++.+||=+|+++|..-......  +..-|++++.|+ .-......+++.   .||.-+..|+....   ....-
T Consensus       150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgm  226 (317)
T KOG1596|consen  150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGM  226 (317)
T ss_pred             cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeee
Confidence            4567889999999999999887777773  345899999999 433333333322   57777777876532   22357


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +|+|+++..-     .....-+.-++...||+||.++++..
T Consensus       227 VDvIFaDvaq-----pdq~RivaLNA~~FLk~gGhfvisik  262 (317)
T KOG1596|consen  227 VDVIFADVAQ-----PDQARIVALNAQYFLKNGGHFVISIK  262 (317)
T ss_pred             EEEEeccCCC-----chhhhhhhhhhhhhhccCCeEEEEEe
Confidence            9999987541     12333444567789999999997643

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.40  E-value=0.028  Score=43.81  Aligned_cols=31  Identities=23%  Similarity=0.493  Sum_probs=25.8

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHH
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD  234 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~  234 (319)
                      ...+|+|||+|.+...+.+.|. .-.|+|.-.
T Consensus        60 ~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~   90 (112)
T PF07757_consen   60 QGFVDLGCGNGLLVYILNSEGY-PGWGIDARR   90 (112)
T ss_pred             CceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence            5789999999999998888877 677888755

; GO: 0008168 methyltransferase activity

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.34  E-value=0.022  Score=53.87  Aligned_cols=110  Identities=17%  Similarity=0.131  Sum_probs=62.5

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc----------CC-------CEEEEEecHH--H---HHHHHH---HHHhcCCCCcEE
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA----------GA-------AKVFAIEKSD--I---AYETID---IIRKNKYDSQIE  253 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~----------g~-------~~V~gvD~s~--~---i~~a~~---~~~~~g~~~~i~  253 (319)
                      ..+.-+|+|+||.+|..++.+...          ..       -.|+--|+..  .   ....-.   .... ...--+.
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~   92 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVS   92 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEE
Confidence            334469999999999888755431          01       1667777543  1   111111   1111 1111233


Q ss_pred             EEEcCccccccCCCceeEEEeccchhhhcc------------------------------------hhhHHHHHHHHhcc
Q psy8709         254 VYHKLLEDVELPVESVDIIISEWMGYFLLF------------------------------------ETMIDSVIDARNRF  297 (319)
Q Consensus       254 ~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~------------------------------------~~~~~~~l~~~~r~  297 (319)
                      -+.+.+..--+|.++.|+++|....||+..                                    ..++..+|+...+-
T Consensus        93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E  172 (334)
T PF03492_consen   93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE  172 (334)
T ss_dssp             EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            455677666688899999999998898732                                    13467788999999


Q ss_pred             cCCCcEEEeecC
Q psy8709         298 LKPDGVVCPNRF  309 (319)
Q Consensus       298 LkpgG~li~~~~  309 (319)
                      |+|||++++...
T Consensus       173 Lv~GG~mvl~~~  184 (334)
T PF03492_consen  173 LVPGGRMVLTFL  184 (334)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             eccCcEEEEEEe
Confidence            999999996643

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.32  E-value=0.035  Score=47.28  Aligned_cols=84  Identities=30%  Similarity=0.318  Sum_probs=47.5

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccHHHHHHHHhcccc---cCCCcceeeccCCCchHHHH
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRTESYKSAILNNKS---LFNNKHVIDVGAGTGILSIF  218 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~~~~~~~i~~~l~---~~~~~~VLDiGcGtG~ls~~  218 (319)
                      +...+.+++||++|||+|+.++.++.. ++.+|+..|.++   ..+.+...+..+..   ..-.-..||.|-.   ....
T Consensus        40 ~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~---~~~~  113 (173)
T PF10294_consen   40 NPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---VLELLRRNIELNGSLLDGRVSVRPLDWGDE---LDSD  113 (173)
T ss_dssp             -GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----HHHHHHHHHHTT--------EEEE--TTS----HHHH
T ss_pred             chhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---hhHHHHHHHHhccccccccccCcEEEecCc---cccc
Confidence            466889999999999999999999988 899999999876   33344444433321   1111245666542   1122


Q ss_pred             HHH-cCCCEEEEEec
Q psy8709         219 AAQ-AGAAKVFAIEK  232 (319)
Q Consensus       219 la~-~g~~~V~gvD~  232 (319)
                      ... ..+.-|+|.|.
T Consensus       114 ~~~~~~~D~IlasDv  128 (173)
T PF10294_consen  114 LLEPHSFDVILASDV  128 (173)
T ss_dssp             HHS-SSBSEEEEES-
T ss_pred             ccccccCCEEEEecc
Confidence            222 34567888875

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG3115|consensus

Probab=96.31  E-value=0.011  Score=51.16  Aligned_cols=106  Identities=12%  Similarity=0.136  Sum_probs=64.1

Q ss_pred             cceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcC------CCCcEEEEEcCccccc---cCCCceeE
Q psy8709         203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNK------YDSQIEVYHKLLEDVE---LPVESVDI  271 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g------~~~~i~~i~~d~~~~~---~~~~~fD~  271 (319)
                      -.+.|||||.|.+.+.++.. +...+.|.++-. .-+..+++++..+      ...++.+...+.....   +..++..-
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk  141 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK  141 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence            47899999999999999985 667899999988 7777766665443      2356667666654331   11122222


Q ss_pred             EEeccchhhhcch-----hhHHHHHHHHhcccCCCcEEEeec
Q psy8709         272 IISEWMGYFLLFE-----TMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       272 Iis~~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .+...+-.++...     -.-..++.+..-+|++||.++..+
T Consensus       142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            2211111111000     012355677778999999998543

>TIGR00095 RNA methyltransferase, RsmD family

Probab=96.28  E-value=0.0057  Score=52.99  Aligned_cols=40  Identities=30%  Similarity=0.365  Sum_probs=35.4

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ..+++++||++||||.++++++..|+++++++|.+.....
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~   86 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQ   86 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence            3578999999999999999999999999999999865443

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.26  E-value=0.012  Score=50.83  Aligned_cols=39  Identities=31%  Similarity=0.411  Sum_probs=32.3

Q ss_pred             CCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|.+++..++ ....+|+++|.+......
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~   84 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAF   84 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHH
Confidence            489999999999999998875 557899999998654443

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.24  E-value=0.0051  Score=48.21  Aligned_cols=37  Identities=27%  Similarity=0.509  Sum_probs=32.2

Q ss_pred             CCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       149 ~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      |.+|||+|||+|.+.+.+++.++.+++++|+++....
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~   37 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVE   37 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHH
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHH
Confidence            4689999999999999999888999999999865433

...

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.23  E-value=0.01  Score=55.46  Aligned_cols=107  Identities=21%  Similarity=0.184  Sum_probs=66.0

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccc--ccC-CCceeEE
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV--ELP-VESVDII  272 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~-~~~fD~I  272 (319)
                      +....+++||+|.|.|.-...+-.. + ...++-++.|+.+......+..+-..........|+..-  ++| ...|+++
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~  189 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLA  189 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehh
Confidence            4455678999999988766555442 2 347788888996666665555553333333333343322  222 3567777


Q ss_pred             Eeccchhhhcc---hhhHHHHHHHHhcccCCCcEEEee
Q psy8709         273 ISEWMGYFLLF---ETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       273 is~~~~~~l~~---~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +   +.+-+.+   +..+...++.++.++.|||.|++-
T Consensus       190 i---~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv  224 (484)
T COG5459         190 I---VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV  224 (484)
T ss_pred             h---hhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence            7   4443433   333455788999999999998843

>TIGR00477 tehB tellurite resistance protein TehB

Probab=96.21  E-value=0.005  Score=53.47  Aligned_cols=40  Identities=25%  Similarity=0.361  Sum_probs=32.8

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...++.+|||+|||+|..++.+++.| ..|+++|+++....
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~   66 (195)
T TIGR00477        27 KTVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIA   66 (195)
T ss_pred             ccCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHH
Confidence            34567899999999999999999876 58999999864443

Part of a tellurite-reducing operon tehA and tehB

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.11  E-value=0.01  Score=54.38  Aligned_cols=41  Identities=24%  Similarity=0.277  Sum_probs=34.4

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ....++.+|||+|||+|.++..+++.++ +++++|+++....
T Consensus        38 l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~   78 (272)
T PRK00274         38 AGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAP   78 (272)
T ss_pred             cCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHH
Confidence            3566889999999999999999998776 8999999975433

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.06  E-value=0.033  Score=51.22  Aligned_cols=87  Identities=13%  Similarity=0.130  Sum_probs=71.0

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ..+.+.++..+...++...+|.--|.|..+..+.+..  .++++|+|.++ +++.|++.+...+  ++++++++++.++.
T Consensus         9 pVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~   86 (314)
T COG0275           9 PVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLA   86 (314)
T ss_pred             chHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHH
Confidence            3456677778888888999999999999999998853  46899999999 9999999988765  69999999987763


Q ss_pred             -----cCCCceeEEEec
Q psy8709         264 -----LPVESVDIIISE  275 (319)
Q Consensus       264 -----~~~~~fD~Iis~  275 (319)
                           ...+++|.|+.+
T Consensus        87 ~~l~~~~i~~vDGiL~D  103 (314)
T COG0275          87 EALKELGIGKVDGILLD  103 (314)
T ss_pred             HHHHhcCCCceeEEEEe
Confidence                 234578888764

>KOG1253|consensus

Probab=96.04  E-value=0.0044  Score=60.21  Aligned_cols=106  Identities=16%  Similarity=0.220  Sum_probs=86.6

Q ss_pred             CCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----cCCCceeEEE
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----LPVESVDIII  273 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----~~~~~fD~Ii  273 (319)
                      ++-+|||.=|++|.-++..++.  +...|++-|.++ .++..+++++.|+..+.++..+.|+..+-    .....||+|-
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID  188 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID  188 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence            4468999999999999988883  677999999999 99999999999988888888888886542    2247899999


Q ss_pred             eccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      .++.+       ....+|..+.+.++.||+++++...+..
T Consensus       189 LDPyG-------s~s~FLDsAvqav~~gGLL~vT~TD~aV  221 (525)
T KOG1253|consen  189 LDPYG-------SPSPFLDSAVQAVRDGGLLCVTCTDMAV  221 (525)
T ss_pred             cCCCC-------CccHHHHHHHHHhhcCCEEEEEecchHh
Confidence            77654       3356788888899999999998877653

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=95.99  E-value=0.011  Score=48.99  Aligned_cols=39  Identities=36%  Similarity=0.535  Sum_probs=31.8

Q ss_pred             CCCeEEEecCCCChhhHHHH-hcC-CceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAA-QAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa-~~g-a~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|.++...+ ..+ ..+++++|+++.....
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~   43 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEY   43 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHH
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHH
Confidence            57899999999999999999 554 7889999998665554

...

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=95.97  E-value=0.02  Score=44.94  Aligned_cols=41  Identities=32%  Similarity=0.485  Sum_probs=33.0

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPI  184 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~  184 (319)
                      ..+.++.+++|+|||+|.++..+++. +..+++++|.+....
T Consensus        15 ~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~   56 (124)
T TIGR02469        15 LRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL   56 (124)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH
Confidence            34556789999999999999998864 568999999875443

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=95.97  E-value=0.14  Score=44.95  Aligned_cols=121  Identities=13%  Similarity=0.063  Sum_probs=73.1

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHH---cCCCEEEEEecHH-HHHHHHHHHHh-----------------
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ---AGAAKVFAIEKSD-IAYETIDIIRK-----------------  245 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~---~g~~~V~gvD~s~-~i~~a~~~~~~-----------------  245 (319)
                      .++.+..+..+....+-++-|..||.|++...+.-   .....|+|-|+++ +++.|++|+..                 
T Consensus        37 sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~  116 (246)
T PF11599_consen   37 SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELY  116 (246)
T ss_dssp             HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHH
Confidence            56666777666666667999999999988765443   2356899999999 99999888631                 


Q ss_pred             ------------------------cCCCCcEEEEEcCccccc----c-CCCceeEEEeccch----hhhc--chhhHHHH
Q psy8709         246 ------------------------NKYDSQIEVYHKLLEDVE----L-PVESVDIIISEWMG----YFLL--FETMIDSV  290 (319)
Q Consensus       246 ------------------------~g~~~~i~~i~~d~~~~~----~-~~~~fD~Iis~~~~----~~l~--~~~~~~~~  290 (319)
                                              .|-.....+...|+.+..    . .....|+|+.+.++    .|-.  ..+....+
T Consensus       117 e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~m  196 (246)
T PF11599_consen  117 EQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQM  196 (246)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHH
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHH
Confidence                                    122234667777877632    1 12346999987643    3433  33457889


Q ss_pred             HHHHhcccCCCcEEEee
Q psy8709         291 IDARNRFLKPDGVVCPN  307 (319)
Q Consensus       291 l~~~~r~LkpgG~li~~  307 (319)
                      |..++.+|-+++++.++
T Consensus       197 l~~l~~vLp~~sVV~v~  213 (246)
T PF11599_consen  197 LNSLAPVLPERSVVAVS  213 (246)
T ss_dssp             HHHHHCCS-TT-EEEEE
T ss_pred             HHHHHhhCCCCcEEEEe
Confidence            99999999667777663

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.95  E-value=0.015  Score=53.98  Aligned_cols=86  Identities=15%  Similarity=0.182  Sum_probs=60.7

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---  263 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---  263 (319)
                      +.+.+++.+...++...+|.--|.|..+..+++. +..+++|+|.++ +++.+.+++...  .+++.++++++.++.   
T Consensus         8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l   85 (310)
T PF01795_consen    8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYL   85 (310)
T ss_dssp             THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHH
T ss_pred             cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHH
Confidence            3455566666778889999999999999999984 558999999999 888887766543  479999999998763   


Q ss_pred             --c-CCCceeEEEecc
Q psy8709         264 --L-PVESVDIIISEW  276 (319)
Q Consensus       264 --~-~~~~fD~Iis~~  276 (319)
                        . ...++|.|+.+.
T Consensus        86 ~~~~~~~~~dgiL~DL  101 (310)
T PF01795_consen   86 KELNGINKVDGILFDL  101 (310)
T ss_dssp             HHTTTTS-EEEEEEE-
T ss_pred             HHccCCCccCEEEEcc
Confidence              2 345899999753

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=95.93  E-value=0.014  Score=49.32  Aligned_cols=39  Identities=31%  Similarity=0.387  Sum_probs=33.2

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .....++.++||+|||+|.++..++.. +.+++++|++..
T Consensus         8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~   46 (169)
T smart00650        8 AANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPR   46 (169)
T ss_pred             hcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHH
Confidence            345667889999999999999999977 578999999854

>KOG1099|consensus

Probab=95.89  E-value=0.014  Score=51.60  Aligned_cols=92  Identities=18%  Similarity=0.256  Sum_probs=65.3

Q ss_pred             cceeeccCCCchHHHHHHHc--C------C--CEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------c
Q psy8709         203 KHVIDVGAGTGILSIFAAQA--G------A--AKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--------L  264 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~--g------~--~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------~  264 (319)
                      ++++|+.+..|.++..+.+.  .      .  .++++||+.+|.          .+ +.|.-+++|+....        +
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------PI-~GV~qlq~DIT~~stae~Ii~hf  111 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------PI-EGVIQLQGDITSASTAEAIIEHF  111 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------cc-CceEEeecccCCHhHHHHHHHHh
Confidence            68999999999999988874  1      1  139999999942          22 46778889987652        4


Q ss_pred             CCCceeEEEeccchhh--hc--ch----hhHHHHHHHHhcccCCCcEEE
Q psy8709         265 PVESVDIIISEWMGYF--LL--FE----TMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~--l~--~~----~~~~~~l~~~~r~LkpgG~li  305 (319)
                      ..++.|+|+|+..-..  ++  .+    +.+...|.-...+|||||.|+
T Consensus       112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV  160 (294)
T KOG1099|consen  112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV  160 (294)
T ss_pred             CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence            5579999999763211  11  11    224455667779999999998

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=95.85  E-value=0.018  Score=52.35  Aligned_cols=46  Identities=28%  Similarity=0.359  Sum_probs=36.7

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      ..+.......++++|||+|||+|.++...++. +.+++++|++....
T Consensus        19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~   64 (258)
T PRK14896         19 DRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLA   64 (258)
T ss_pred             HHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHH
Confidence            34444456678999999999999999999977 46899999986443

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.83  E-value=0.0067  Score=47.45  Aligned_cols=43  Identities=12%  Similarity=0.202  Sum_probs=32.9

Q ss_pred             ceeEEEeccchhhhc---chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         268 SVDIIISEWMGYFLL---FETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~---~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +||+|+|-.+..|++   +++.+..+++.+++.|+|||.|+++...
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~   46 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP   46 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence            499999988777764   4566899999999999999999977543

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK14967 putative methyltransferase; Provisional

Probab=95.81  E-value=0.017  Score=51.14  Aligned_cols=41  Identities=37%  Similarity=0.538  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...++.+|||+|||+|.+++.+++.++.+++++|+++....
T Consensus        33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~   73 (223)
T PRK14967         33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVR   73 (223)
T ss_pred             ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHH
Confidence            35678899999999999999999888779999999875544

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=95.79  E-value=0.055  Score=51.89  Aligned_cols=53  Identities=17%  Similarity=0.177  Sum_probs=40.7

Q ss_pred             EcCccccccCCCceeEEEeccchhhhcc-----------------------------------hhhHHHHHHHHhcccCC
Q psy8709         256 HKLLEDVELPVESVDIIISEWMGYFLLF-----------------------------------ETMIDSVIDARNRFLKP  300 (319)
Q Consensus       256 ~~d~~~~~~~~~~fD~Iis~~~~~~l~~-----------------------------------~~~~~~~l~~~~r~Lkp  300 (319)
                      .|.+..--+|.++.++++|....||+..                                   ..+...+|+...+-|.|
T Consensus       150 pGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvp  229 (386)
T PLN02668        150 PGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKR  229 (386)
T ss_pred             CccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3455555578899999999999898752                                   01356778888999999


Q ss_pred             CcEEEeec
Q psy8709         301 DGVVCPNR  308 (319)
Q Consensus       301 gG~li~~~  308 (319)
                      ||.+++..
T Consensus       230 GG~mvl~~  237 (386)
T PLN02668        230 GGAMFLVC  237 (386)
T ss_pred             CcEEEEEE
Confidence            99999765

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.77  E-value=0.024  Score=50.12  Aligned_cols=79  Identities=16%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             CCcceeeccCCCchH-HHH-HHHcCCCEEEEEecHH-HHHHHHHHHHhc-CCCCcEEEEEcCcccccc-----CCCceeE
Q psy8709         201 NNKHVIDVGAGTGIL-SIF-AAQAGAAKVFAIEKSD-IAYETIDIIRKN-KYDSQIEVYHKLLEDVEL-----PVESVDI  271 (319)
Q Consensus       201 ~~~~VLDiGcGtG~l-s~~-la~~g~~~V~gvD~s~-~i~~a~~~~~~~-g~~~~i~~i~~d~~~~~~-----~~~~fD~  271 (319)
                      ++-++||||.|.-.. .+. ....|. +.+|.|+++ .+..|..++..| ++...+++....-.+--+     ..+.||+
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~  156 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA  156 (292)
T ss_pred             CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence            345789999885432 111 222455 899999999 999999999888 776777776544332222     2578999


Q ss_pred             EEeccchhh
Q psy8709         272 IISEWMGYF  280 (319)
Q Consensus       272 Iis~~~~~~  280 (319)
                      ..||+++|-
T Consensus       157 tlCNPPFh~  165 (292)
T COG3129         157 TLCNPPFHD  165 (292)
T ss_pred             EecCCCcch
Confidence            999999874

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=95.74  E-value=0.01  Score=50.58  Aligned_cols=40  Identities=20%  Similarity=0.438  Sum_probs=33.6

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..+++++||+|||+|.++..++..+. +++++|+++.....
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~   56 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKE   56 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHH
Confidence            45678899999999999999998877 99999998655443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=95.69  E-value=0.02  Score=50.06  Aligned_cols=101  Identities=19%  Similarity=0.185  Sum_probs=59.1

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCC
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAA  225 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~  225 (319)
                      .++.++||+|||+|.+++.+...++.+|+++|.++.......  +.+ +.....   + +.+=+|.-  ...+.. ...-
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~--~Nl-~~~~~~---~-v~~~~~D~--~~~l~~~~~~f  122 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI--KNL-ATLKAG---N-ARVVNTNA--LSFLAQPGTPH  122 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH--HHH-HHhCCC---c-EEEEEchH--HHHHhhcCCCc
Confidence            467899999999999999876667889999999855433321  111 111111   1 22223332  222222 1223


Q ss_pred             EEEEEecH--H-HHHHHHHHHHhcCC--CCcEEEEE
Q psy8709         226 KVFAIEKS--D-IAYETIDIIRKNKY--DSQIEVYH  256 (319)
Q Consensus       226 ~V~gvD~s--~-~i~~a~~~~~~~g~--~~~i~~i~  256 (319)
                      .++-+|+.  . +.+.+.+.+...++  .+.+-++.
T Consensus       123 DlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve  158 (199)
T PRK10909        123 NVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE  158 (199)
T ss_pred             eEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence            78888877  4 66677777766543  24444444

>KOG2187|consensus

Probab=95.69  E-value=0.022  Score=55.75  Aligned_cols=113  Identities=18%  Similarity=0.209  Sum_probs=73.1

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhccc--ccCCC------cceee
Q psy8709         136 YKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNK--SLFNN------KHVID  207 (319)
Q Consensus       136 ~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l--~~~~~------~~VLD  207 (319)
                      +...+..+..+-.++.++|+-||||.+++..++ ++.+|+|+++++..+...+++..+-...  ....|      ..+++
T Consensus       371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~  449 (534)
T KOG2187|consen  371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLT  449 (534)
T ss_pred             HHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcc
Confidence            445666777888899999999999999997774 6789999999998888877776654332  11111      23344


Q ss_pred             ccCCCchHHHHHHHcCCCEEEEEecHH--HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         208 VGAGTGILSIFAAQAGAAKVFAIEKSD--IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       208 iGcGtG~ls~~la~~g~~~V~gvD~s~--~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      .-|+++.           -+.-+|++.  +-....+.+.......++.++.++..
T Consensus       450 ~~~~~~~-----------~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~  493 (534)
T KOG2187|consen  450 PCCDSET-----------LVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPH  493 (534)
T ss_pred             cCCCCCc-----------eEEEECCCcccccHHHHHHHHhccCccceEEEEcCHH
Confidence            4444332           366677776  44444454544443356666655543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=95.68  E-value=0.019  Score=52.64  Aligned_cols=45  Identities=29%  Similarity=0.395  Sum_probs=38.6

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      +.+....++.+|+++||+|||-|.+.+.+|+.=.-+|+|++++..
T Consensus        62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~  106 (283)
T COG2230          62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEE  106 (283)
T ss_pred             HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHH
Confidence            345567789999999999999999999999766788999998754

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.66  E-value=0.035  Score=52.39  Aligned_cols=102  Identities=25%  Similarity=0.228  Sum_probs=78.5

Q ss_pred             CcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccch
Q psy8709         202 NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMG  278 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~  278 (319)
                      ..+|+|.=+|+|.=++..+.. +..+|+.-|+|| ..+.+++|++.|.. .+...++.|+..+-.. ...||+|=.++.+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiDPFG  131 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDIDPFG  131 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecCCCC
Confidence            479999999999999888874 555999999999 99999999998833 4566667777655322 2689999877654


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                             .+..++..+.+.++.||++.++....
T Consensus       132 -------SPaPFlDaA~~s~~~~G~l~vTATD~  157 (380)
T COG1867         132 -------SPAPFLDAALRSVRRGGLLCVTATDT  157 (380)
T ss_pred             -------CCchHHHHHHHHhhcCCEEEEEeccc
Confidence                   23456677777888899999876554

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=95.65  E-value=0.026  Score=49.97  Aligned_cols=42  Identities=24%  Similarity=0.294  Sum_probs=33.3

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcc
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPI  184 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~  184 (319)
                      .....++++|||+|||+|.++..+++ .+ ...++++|+++...
T Consensus        40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~   83 (231)
T TIGR02752        40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML   83 (231)
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            34566789999999999999988874 44 56999999976443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=95.62  E-value=0.028  Score=50.40  Aligned_cols=52  Identities=21%  Similarity=0.420  Sum_probs=39.7

Q ss_pred             HHHHHHHhcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709         135 SYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       135 ~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~  186 (319)
                      .|++.........+|.+|||++||||-+++..+ ..|..+|+++|++......
T Consensus        38 ~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~   90 (238)
T COG2226          38 LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEV   90 (238)
T ss_pred             HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHH
Confidence            344444444445599999999999999999988 5569999999998655444

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=95.62  E-value=0.017  Score=55.34  Aligned_cols=39  Identities=21%  Similarity=0.463  Sum_probs=32.2

Q ss_pred             CCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      .+.+|||+|||+|.+++.+++.. ..+++++|.+......
T Consensus       228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~  267 (378)
T PRK15001        228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVAS  267 (378)
T ss_pred             cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            35699999999999999998665 7799999998655444

>KOG1562|consensus

Probab=95.59  E-value=0.036  Score=50.81  Aligned_cols=115  Identities=18%  Similarity=0.146  Sum_probs=80.2

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc--CC-CCcEEEEEcCcccc--ccCCCceeE
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN--KY-DSQIEVYHKLLEDV--ELPVESVDI  271 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~--g~-~~~i~~i~~d~~~~--~~~~~~fD~  271 (319)
                      ..+.++||-||.|.|...+..+++ ...++.-+|+.. .++..++....-  |+ .+++.++-||...+  ..+.++||+
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV  198 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV  198 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence            344579999999999988887775 356888999999 777777665432  33 36888999987654  244689999


Q ss_pred             EEeccchhhhcch-hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         272 IISEWMGYFLLFE-TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       272 Iis~~~~~~l~~~-~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      |+.+..-...... --.+.++.-+.+.||+||+++...-.+|+
T Consensus       199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl  241 (337)
T KOG1562|consen  199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWL  241 (337)
T ss_pred             EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehH
Confidence            9975421111111 12456778888999999999977665554

>PRK04266 fibrillarin; Provisional

Probab=95.58  E-value=0.018  Score=51.28  Aligned_cols=41  Identities=22%  Similarity=0.335  Sum_probs=34.4

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCc
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTP  183 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~  183 (319)
                      ...+.++.+|||+|||+|.++..++.. +...|+++|+++..
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~m  108 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRP  108 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHH
Confidence            456789999999999999999998854 45789999998643

>KOG2793|consensus

Probab=95.53  E-value=0.059  Score=48.53  Aligned_cols=102  Identities=18%  Similarity=0.237  Sum_probs=62.1

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHH-----hcCCCCcEEEEEcCcccc---ccCCCc-eeEE
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIR-----KNKYDSQIEVYHKLLEDV---ELPVES-VDII  272 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~-----~~g~~~~i~~i~~d~~~~---~~~~~~-fD~I  272 (319)
                      ..+||++|+|+|..++.++.....+|...|....+.....+..     .+++...+.+..-+..+.   .+-.+. ||+|
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli  166 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI  166 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence            4679999999998888888865669999998883333333322     222222444433333222   111233 9999


Q ss_pred             EeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +..-+.|..   +..+.++..+..+|..+|.+++
T Consensus       167 lasDvvy~~---~~~e~Lv~tla~ll~~~~~i~l  197 (248)
T KOG2793|consen  167 LASDVVYEE---ESFEGLVKTLAFLLAKDGTIFL  197 (248)
T ss_pred             EEeeeeecC---CcchhHHHHHHHHHhcCCeEEE
Confidence            976655443   4455566666777888885544

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.53  E-value=0.033  Score=51.10  Aligned_cols=70  Identities=19%  Similarity=0.153  Sum_probs=52.1

Q ss_pred             ceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC--CCceeEEEeccchhh
Q psy8709         204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP--VESVDIIISEWMGYF  280 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~--~~~fD~Iis~~~~~~  280 (319)
                      +++|+.||.|.++.-+.+.|...+.++|+++ .++..+.+..     .  .++.+|+.++...  ...+|+++..++...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~   74 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDFIPDIDLLTGGFPCQP   74 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhcCCCCCEEEeCCCChh
Confidence            6899999999999999999988899999999 5444333321     1  1567788776532  357999998876553

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=95.52  E-value=0.03  Score=46.08  Aligned_cols=36  Identities=33%  Similarity=0.444  Sum_probs=31.6

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ..++++|||+|||+|.+....++.|. +++++|+++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~   55 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQ   55 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHH
Confidence            56889999999999999988888877 8999999753

...

>KOG2920|consensus

Probab=95.51  E-value=0.011  Score=53.72  Aligned_cols=59  Identities=20%  Similarity=0.246  Sum_probs=37.7

Q ss_pred             hhhhhhchhHHHHHHHHHHHhc---CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecC
Q psy8709         122 IHAEMIKDTVRTESYKSAILNN---NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS  180 (319)
Q Consensus       122 ~~~~m~~d~~r~~~~~~~i~~n---~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d  180 (319)
                      .++..++-+..+......+..+   .-.+.+++|||+|||+|+-++.+.+.|+..+...|.+
T Consensus        87 vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~n  148 (282)
T KOG2920|consen   87 VYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFN  148 (282)
T ss_pred             eeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecc
Confidence            4555566555555555555433   4456777777777777777777777776666666654

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.49  E-value=0.023  Score=49.37  Aligned_cols=39  Identities=28%  Similarity=0.444  Sum_probs=32.4

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ..++.+|||+|||+|..++..++.| .+|+++|+++....
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~   66 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIA   66 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHH
Confidence            4577899999999999999998775 48999999865443

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.40  E-value=0.038  Score=48.36  Aligned_cols=45  Identities=20%  Similarity=0.292  Sum_probs=34.1

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcc
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPI  184 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~  184 (319)
                      +.......++.+|||+|||+|..+..+++. + ..+|+++|+++...
T Consensus        64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~  110 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA  110 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH
Confidence            333345568899999999999999877754 3 56899999985443

>PRK04148 hypothetical protein; Provisional

Probab=95.38  E-value=0.14  Score=41.77  Aligned_cols=95  Identities=17%  Similarity=0.155  Sum_probs=60.0

Q ss_pred             HHHhcCCCCCCCeEEEecCCCCh-hhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHH
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGI-LSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSI  217 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~-l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~  217 (319)
                      ++..+....++++++++|||+|. ++...++.| ..|.++|+++.....  ..+..       ....+-|+.--+..   
T Consensus         7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~--a~~~~-------~~~v~dDlf~p~~~---   73 (134)
T PRK04148          7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEK--AKKLG-------LNAFVDDLFNPNLE---   73 (134)
T ss_pred             HHHHhcccccCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHH--HHHhC-------CeEEECcCCCCCHH---
Confidence            34444444567899999999997 887777765 699999998763221  11111       11233344433221   


Q ss_pred             HHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC
Q psy8709         218 FAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY  248 (319)
Q Consensus       218 ~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~  248 (319)
                        .-.++.-++++=+.+ +.....+..++.+.
T Consensus        74 --~y~~a~liysirpp~el~~~~~~la~~~~~  103 (134)
T PRK04148         74 --IYKNAKLIYSIRPPRDLQPFILELAKKINV  103 (134)
T ss_pred             --HHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence              123567899998888 77777777776654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.37  E-value=0.038  Score=47.53  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=32.2

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhc--CCceEEeeecCCC
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSGT  182 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~--ga~~V~avd~d~~  182 (319)
                      ..+.++++|||+|||+|.++..++..  +..+++++|+++.
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~   68 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM   68 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence            44678999999999999998887743  3668999999874

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=95.35  E-value=0.032  Score=48.85  Aligned_cols=41  Identities=12%  Similarity=0.230  Sum_probs=33.0

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      +.++.+|||+|||+|.+....+.. +...++|+|+++.....
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~   82 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK   82 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            446789999999999998887754 67899999998654443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.30  E-value=0.039  Score=48.54  Aligned_cols=43  Identities=21%  Similarity=0.247  Sum_probs=34.0

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCCcc
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGTPI  184 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~~~  184 (319)
                      ....+.++.+|||+|||+|.++...++..  ..+|+++|.++...
T Consensus        71 ~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~  115 (215)
T TIGR00080        71 ELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA  115 (215)
T ss_pred             HHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence            33456789999999999999999888654  45799999986443

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=95.25  E-value=0.05  Score=47.99  Aligned_cols=40  Identities=35%  Similarity=0.448  Sum_probs=32.3

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++.+|||+|||+|.++...++.+. .++++|.+......
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~  100 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEE  100 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence            45788999999999999998887775 49999997654443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.24  E-value=0.042  Score=48.40  Aligned_cols=46  Identities=24%  Similarity=0.385  Sum_probs=35.7

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCc
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTP  183 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~  183 (319)
                      ..+.....+.++.+|||+|||+|.++..+++. + ..+|+++|+++..
T Consensus        66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~  113 (212)
T PRK13942         66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPEL  113 (212)
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHH
Confidence            33444456778999999999999999887755 4 4699999998643

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.24  E-value=0.041  Score=49.67  Aligned_cols=43  Identities=26%  Similarity=0.340  Sum_probs=34.0

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcc
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPI  184 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~  184 (319)
                      ......++.+|||+|||+|.++..++. .+..+++++|.++...
T Consensus        25 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i   68 (258)
T PRK01683         25 ARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML   68 (258)
T ss_pred             hhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH
Confidence            334556789999999999999988874 4578999999986433

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=95.21  E-value=0.051  Score=49.46  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=34.1

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~~  186 (319)
                      ..+.++.+|||+|||+|.++..++. .+ ...++|+|+++.....
T Consensus        69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~  113 (261)
T PLN02233         69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAV  113 (261)
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            3456789999999999999988775 45 4699999998765544

>PRK06202 hypothetical protein; Provisional

Probab=95.20  E-value=0.045  Score=48.66  Aligned_cols=38  Identities=29%  Similarity=0.368  Sum_probs=29.6

Q ss_pred             CCCCeEEEecCCCChhhHHHHhc----C-CceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQA----G-AAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~----g-a~~V~avd~d~~~~  184 (319)
                      .++.+|||+|||+|.++...+..    | ..+++|+|.++...
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l  101 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV  101 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH
Confidence            46789999999999988776642    3 35899999986543

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=95.20  E-value=0.028  Score=48.75  Aligned_cols=41  Identities=24%  Similarity=0.442  Sum_probs=32.1

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .+..++.++||+|||.|--++..|..|- .|+|+|.++....
T Consensus        26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~   66 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALE   66 (192)
T ss_dssp             CTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHH
T ss_pred             HhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHH
Confidence            3456788999999999999999999986 5999999865544

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=95.14  E-value=0.036  Score=54.43  Aligned_cols=65  Identities=43%  Similarity=0.561  Sum_probs=48.1

Q ss_pred             hhhhhhchhHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCChhhHHHHhcC-----CceEEeeecCCCcccH
Q psy8709         122 IHAEMIKDTVRTESYKSAILNNNSL--------FNNKHVIDVGAGTGILSIFAAQAG-----AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       122 ~~~~m~~d~~r~~~~~~~i~~n~~~--------~~~~~vLD~G~GsG~l~i~aa~~g-----a~~V~avd~d~~~~~~  186 (319)
                      .++.+-+|.++...|.++|......        ..++.|+|+|||+|.|...+++.+     +.+|+|++.++....+
T Consensus       152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~  229 (448)
T PF05185_consen  152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT  229 (448)
T ss_dssp             HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred             cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence            4556778999999999988754221        146899999999999998887665     7899999998765544

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=95.10  E-value=0.031  Score=49.15  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=30.4

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSG  181 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~  181 (319)
                      +.++.+|||+|||+|.++..+++. + ...|+++|+++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            467889999999999999887754 4 46999999976

>PRK11524 putative methyltransferase; Provisional

Probab=95.10  E-value=0.023  Score=52.34  Aligned_cols=58  Identities=24%  Similarity=0.214  Sum_probs=43.5

Q ss_pred             cEEEEEcCcccc--ccCCCceeEEEeccchhhhc-------------chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         251 QIEVYHKLLEDV--ELPVESVDIIISEWMGYFLL-------------FETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       251 ~i~~i~~d~~~~--~~~~~~fD~Iis~~~~~~l~-------------~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +.+++++|..+.  .++.++||+|++++++....             +...+..++.++.++|||||.+++..
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            457888998875  46678999999999864210             11224678999999999999999753

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.05  E-value=0.04  Score=49.77  Aligned_cols=41  Identities=24%  Similarity=0.350  Sum_probs=32.9

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPI  184 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~  184 (319)
                      ....++.+|||+|||+|.++...+... ..+++++|+++...
T Consensus        25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~   66 (255)
T PRK14103         25 VGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV   66 (255)
T ss_pred             CCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH
Confidence            445678999999999999998887553 56899999976443

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=94.98  E-value=0.03  Score=48.33  Aligned_cols=37  Identities=19%  Similarity=0.362  Sum_probs=30.9

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      +.++.+|||+|||.|.+--.......-..+|+|+++.
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~   47 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPD   47 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHH
Confidence            4589999999999999987777667888899998753

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=94.95  E-value=0.031  Score=50.30  Aligned_cols=51  Identities=25%  Similarity=0.394  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCc
Q psy8709         131 VRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTP  183 (319)
Q Consensus       131 ~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~  183 (319)
                      ..+++...+-+....  ..++|||+|||+|.+++++++. ...++.++|++...
T Consensus        29 ~~~DaiLL~~~~~~~--~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~   80 (248)
T COG4123          29 YGTDAILLAAFAPVP--KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEA   80 (248)
T ss_pred             cccHHHHHHhhcccc--cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHH
Confidence            344554444433333  3889999999999999999965 67999999998643

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=94.86  E-value=0.047  Score=52.55  Aligned_cols=45  Identities=27%  Similarity=0.313  Sum_probs=35.5

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      +.....+.++.+|||+|||+|.++..+++....+|+++|+++...
T Consensus       159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l  203 (383)
T PRK11705        159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ  203 (383)
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            334456778999999999999999988865455899999976433

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=94.84  E-value=0.036  Score=51.10  Aligned_cols=38  Identities=24%  Similarity=0.421  Sum_probs=31.7

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .++++|||+|||+|..++.+++.| .+|+|+|.+.....
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~  156 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLE  156 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHH
Confidence            456699999999999999999876 58999999865544

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=94.83  E-value=0.06  Score=52.87  Aligned_cols=42  Identities=19%  Similarity=0.230  Sum_probs=34.9

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ....++.+|||+|||+|.+++.++..+ .+++|+|++......
T Consensus       293 l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~  334 (443)
T PRK13168        293 LDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVER  334 (443)
T ss_pred             hcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHH
Confidence            345678899999999999999998765 689999998766554

>PRK08317 hypothetical protein; Provisional

Probab=94.77  E-value=0.063  Score=47.17  Aligned_cols=46  Identities=24%  Similarity=0.330  Sum_probs=35.6

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCc
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTP  183 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~  183 (319)
                      ..+.....+.++.+|||+|||+|.++...+.. + ..+++++|.++..
T Consensus         9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~   56 (241)
T PRK08317          9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAM   56 (241)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHH
Confidence            33444556778999999999999999888754 3 5789999987543

>TIGR00755 ksgA dimethyladenosine transferase

Probab=94.77  E-value=0.067  Score=48.35  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=35.0

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      +.......++.+|||+|||+|.++...++.+. .++++|.+....
T Consensus        21 i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~   64 (253)
T TIGR00755        21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLA   64 (253)
T ss_pred             HHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHH
Confidence            33334566889999999999999999997774 599999987543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=94.72  E-value=0.03  Score=51.53  Aligned_cols=40  Identities=28%  Similarity=0.522  Sum_probs=33.1

Q ss_pred             eEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccHHHHH
Q psy8709         151 HVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRTESYK  190 (319)
Q Consensus       151 ~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~~~~~  190 (319)
                      +|+|+|||||.+++..++.. ...|+|+|+++........+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N  153 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN  153 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH
Confidence            89999999999999999776 56999999998666554333

>PLN02244 tocopherol O-methyltransferase

Probab=94.72  E-value=0.068  Score=50.60  Aligned_cols=39  Identities=31%  Similarity=0.306  Sum_probs=32.6

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .++++|||+|||+|.++..+++....+|+++|+++....
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~  155 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAA  155 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHH
Confidence            678899999999999999988755669999999865444

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=94.69  E-value=0.062  Score=49.29  Aligned_cols=43  Identities=30%  Similarity=0.384  Sum_probs=30.3

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      .+.....+.+|.+|||+|||-|.+++.+++.-..+|+++.++.
T Consensus        53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~   95 (273)
T PF02353_consen   53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSE   95 (273)
T ss_dssp             HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-H
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCH
Confidence            4556678999999999999999999999965334799998763

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=94.68  E-value=0.056  Score=49.24  Aligned_cols=43  Identities=23%  Similarity=0.333  Sum_probs=33.7

Q ss_pred             HhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         141 LNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       141 ~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      .....+.++.+|||+|||+|..+...+.....+++++|+++..
T Consensus        45 l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~   87 (263)
T PTZ00098         45 LSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKM   87 (263)
T ss_pred             HHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHH
Confidence            3445677899999999999999887775445589999987543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=94.68  E-value=0.039  Score=48.14  Aligned_cols=39  Identities=18%  Similarity=0.263  Sum_probs=31.6

Q ss_pred             CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|.++...+.. ....++++|+++.....
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~   79 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGK   79 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHH
Confidence            5789999999999999988754 46789999998754443

>PRK05785 hypothetical protein; Provisional

Probab=94.66  E-value=0.041  Score=48.95  Aligned_cols=39  Identities=28%  Similarity=0.326  Sum_probs=31.4

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||||.++...+.....+++|+|.+......
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~   89 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM   89 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence            478999999999999988876545689999998655443

>PRK13699 putative methylase; Provisional

Probab=94.63  E-value=0.036  Score=49.47  Aligned_cols=54  Identities=19%  Similarity=0.193  Sum_probs=41.1

Q ss_pred             EEEEcCcccc--ccCCCceeEEEeccchhhh-c-----------chhhHHHHHHHHhcccCCCcEEEe
Q psy8709         253 EVYHKLLEDV--ELPVESVDIIISEWMGYFL-L-----------FETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       253 ~~i~~d~~~~--~~~~~~fD~Iis~~~~~~l-~-----------~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +++++|..++  .++++++|+|++++++..- .           ..+-...++.+++|+|||||.+++
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5778888766  6788999999999987410 0           012346788999999999999875

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=94.52  E-value=0.45  Score=43.30  Aligned_cols=124  Identities=11%  Similarity=0.102  Sum_probs=83.2

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCC--CCcEEEEEcCcccc-
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY--DSQIEVYHKLLEDV-  262 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~--~~~i~~i~~d~~~~-  262 (319)
                      +..+-+.+...+... ...|+.+|||--.-...+.......++-+|..++++.-++.+...+.  ..+.+++..|+.+. 
T Consensus        67 tr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w  145 (260)
T TIGR00027        67 TRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDW  145 (260)
T ss_pred             HHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhH
Confidence            333334444443322 34799999998766666543323478888888866666677776442  36788999998621 


Q ss_pred             -------ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         263 -------ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       263 -------~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                             .+....--+++++.+.+++ .++....+++.+.+...||+.++++..+.
T Consensus       146 ~~~L~~~gfd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       146 PAALAAAGFDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             HHHHHhCCCCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence                   1112345578888887775 44677899999999888999999987654

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=94.51  E-value=0.067  Score=50.04  Aligned_cols=39  Identities=23%  Similarity=0.344  Sum_probs=33.0

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||+|.+++.++..+ .+|+++|+++.....
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~  210 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIAC  210 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHH
Confidence            357899999999999999999866 689999998665544

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.39  E-value=0.11  Score=47.02  Aligned_cols=38  Identities=29%  Similarity=0.364  Sum_probs=31.2

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .++.+|||+|||+|.++...+..| ..|+++|+++....
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~   80 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQ   80 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHH
Confidence            356799999999999999998875 68999998765443

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=94.34  E-value=0.099  Score=46.97  Aligned_cols=37  Identities=30%  Similarity=0.470  Sum_probs=30.0

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .++.+|||+|||+|.++...+..+ ..++++|+++...
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l   77 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPML   77 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHH
Confidence            357899999999999988877655 6899999986443

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=94.33  E-value=0.042  Score=49.19  Aligned_cols=43  Identities=28%  Similarity=0.341  Sum_probs=28.4

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~~  186 (319)
                      ....++.+|||+|||||.++..+++ .+ ..+|+++|+++.....
T Consensus        43 ~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~   87 (233)
T PF01209_consen   43 LGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV   87 (233)
T ss_dssp             HT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred             cCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence            3466889999999999999998774 45 5799999998765544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.32  E-value=0.17  Score=47.47  Aligned_cols=97  Identities=20%  Similarity=0.198  Sum_probs=55.3

Q ss_pred             ccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe
Q psy8709         198 SLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS  274 (319)
Q Consensus       198 ~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis  274 (319)
                      ...++.+||-.||| .|.++..+++ .|..+|+++|.++ .++.++    +.|...-+..-..++.+.....+.+|+|+.
T Consensus       166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~~~g~~D~vid  241 (343)
T PRK09880        166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----EMGADKLVNPQNDDLDHYKAEKGYFDVSFE  241 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----HcCCcEEecCCcccHHHHhccCCCCCEEEE
Confidence            34467889888876 4555666666 4666899999998 554443    344311111111122221111235899985


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .. +    .    ...+....+.|++||.++.-
T Consensus       242 ~~-G----~----~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        242 VS-G----H----PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             CC-C----C----HHHHHHHHHHhhcCCEEEEE
Confidence            32 1    1    12445566789999998853

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.29  E-value=0.058  Score=39.87  Aligned_cols=30  Identities=37%  Similarity=0.560  Sum_probs=25.6

Q ss_pred             EEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         153 IDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ||+|||+|..+...++.+..+++++|.+..
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~   30 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEE   30 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHH
Confidence            799999999999999889999999999754

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=94.29  E-value=0.12  Score=45.80  Aligned_cols=40  Identities=40%  Similarity=0.485  Sum_probs=31.8

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      .....++.+|||+|||+|.++...++.+ ..++++|.+...
T Consensus        43 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~   82 (233)
T PRK05134         43 HAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEEN   82 (233)
T ss_pred             hccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHH
Confidence            3345688999999999999998888776 468999887543

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=94.25  E-value=0.075  Score=50.00  Aligned_cols=47  Identities=28%  Similarity=0.267  Sum_probs=36.3

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ++.....+.+++++||+|||||.+.++++..+ ..++|+|++......
T Consensus       173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~  219 (329)
T TIGR01177       173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAG  219 (329)
T ss_pred             HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHH
Confidence            33333456788999999999999999988765 579999998755443

This family is found exclusively in the Archaea.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=94.24  E-value=0.085  Score=48.95  Aligned_cols=46  Identities=28%  Similarity=0.378  Sum_probs=36.0

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .+.......++.+|||+|||+|.++..++..+ .+++++|+|.....
T Consensus        27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~   72 (294)
T PTZ00338         27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVA   72 (294)
T ss_pred             HHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHH
Confidence            34444566788999999999999999888654 57999999865444

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=94.15  E-value=0.07  Score=49.25  Aligned_cols=48  Identities=21%  Similarity=0.370  Sum_probs=37.4

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      .+..+.....+.+|+|+|||.|.+++.+++.. ..+++=+|++......
T Consensus       149 lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~  197 (300)
T COG2813         149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVES  197 (300)
T ss_pred             HHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHH
Confidence            44455565666699999999999999999776 7888889988655544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=94.14  E-value=0.12  Score=45.34  Aligned_cols=40  Identities=25%  Similarity=0.409  Sum_probs=31.9

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ......++.+|||+|||+|.++...++.. .+++++|.++.
T Consensus        72 ~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~  111 (212)
T PRK00312         72 ELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKT  111 (212)
T ss_pred             HhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHH
Confidence            33456788999999999999998777665 47999998843

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.10  E-value=0.16  Score=47.85  Aligned_cols=94  Identities=23%  Similarity=0.216  Sum_probs=60.4

Q ss_pred             cccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC-ccccccCCCceeEE
Q psy8709         197 KSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL-LEDVELPVESVDII  272 (319)
Q Consensus       197 l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d-~~~~~~~~~~fD~I  272 (319)
                      ....++++|+-+|+| .|.++..+++ .| .+|+++|.++ -.+.|++    .|-   -.++... ....+.-.+.||+|
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~----lGA---d~~i~~~~~~~~~~~~~~~d~i  233 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKK----LGA---DHVINSSDSDALEAVKEIADAI  233 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHH----hCC---cEEEEcCCchhhHHhHhhCcEE
Confidence            456778899888887 5577888888 56 6999999999 5555554    332   2334433 21111111349999


Q ss_pred             EeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +....          ...+....+.|++||.++.--
T Consensus       234 i~tv~----------~~~~~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         234 IDTVG----------PATLEPSLKALRRGGTLVLVG  259 (339)
T ss_pred             EECCC----------hhhHHHHHHHHhcCCEEEEEC
Confidence            96432          233455567899999998543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.07  E-value=0.099  Score=45.81  Aligned_cols=40  Identities=23%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .-..+.++.+||++|||||..+-..+++.. +|+++|....
T Consensus        66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~  105 (209)
T COG2518          66 QLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEE  105 (209)
T ss_pred             HHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHH
Confidence            345688999999999999999988887766 9999998743

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=94.07  E-value=0.07  Score=49.98  Aligned_cols=39  Identities=36%  Similarity=0.387  Sum_probs=32.6

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||+|.+++..++.| ..|+++|+++.....
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~  181 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAE  181 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHH
Confidence            467899999999999999999876 589999998765443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=94.01  E-value=0.093  Score=47.49  Aligned_cols=39  Identities=18%  Similarity=0.285  Sum_probs=31.5

Q ss_pred             CCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~  186 (319)
                      .+.++||+|||+|.+++.++. .+..+++++|+++.....
T Consensus        86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~  125 (251)
T TIGR03704        86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRC  125 (251)
T ss_pred             CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            345899999999999999874 456789999998766554

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=94.01  E-value=0.09  Score=50.46  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=32.8

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .+++++||++||+|.+++.++..+ ..++++|+++.....
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~  270 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIAC  270 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHH
Confidence            456899999999999999999665 689999998766554

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=93.99  E-value=0.088  Score=47.82  Aligned_cols=52  Identities=25%  Similarity=0.323  Sum_probs=37.7

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCccc
Q psy8709         134 ESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       134 ~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~  185 (319)
                      +.+...+.......++.+|||+|||+|.+++..+... ...++++|+++....
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~  146 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALA  146 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            3344433333345577899999999999999988654 788999999865443

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=93.97  E-value=0.2  Score=45.61  Aligned_cols=105  Identities=17%  Similarity=0.193  Sum_probs=75.7

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC---CCceeEE
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP---VESVDII  272 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~---~~~fD~I  272 (319)
                      ....|+.|+-+| -.-..++.++-. -+.+|..+|+++ .+....+.+++.|+ ++++.+.-|+.+. +|   ..+||++
T Consensus       149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~p-lpe~~~~kFDvf  225 (354)
T COG1568         149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNP-LPEDLKRKFDVF  225 (354)
T ss_pred             cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhccc-ChHHHHhhCCee
Confidence            344567899898 444445544442 256999999999 99999999999998 6799999998773 44   3689999


Q ss_pred             EeccchhhhcchhhHHHHHHHHhcccCCC---cEEEeecC
Q psy8709         273 ISEWMGYFLLFETMIDSVIDARNRFLKPD---GVVCPNRF  309 (319)
Q Consensus       273 is~~~~~~l~~~~~~~~~l~~~~r~Lkpg---G~li~~~~  309 (319)
                      +.+++.-    ...+..++..=...||.-   |++.++.-
T Consensus       226 iTDPpeT----i~alk~FlgRGI~tLkg~~~aGyfgiT~r  261 (354)
T COG1568         226 ITDPPET----IKALKLFLGRGIATLKGEGCAGYFGITRR  261 (354)
T ss_pred             ecCchhh----HHHHHHHHhccHHHhcCCCccceEeeeec
Confidence            9988732    245666666666667655   77776554

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=93.93  E-value=0.071  Score=48.03  Aligned_cols=41  Identities=22%  Similarity=0.344  Sum_probs=32.0

Q ss_pred             CCCCCeEEEecCCCChhhHHHHh---cCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQ---AGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~---~ga~~V~avd~d~~~~~~  186 (319)
                      ..++.+|||+|||+|.++...++   ....+++++|.++.....
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~   97 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIER   97 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence            34778999999999999887765   246799999998654443

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=93.93  E-value=0.65  Score=41.86  Aligned_cols=55  Identities=22%  Similarity=0.345  Sum_probs=42.8

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcccH--HHHHHH
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIRT--ESYKSA  192 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~~--~~~~~~  192 (319)
                      .+|....++.+|.+|++.|+|||.++...+. .| ..+|+.+|+.......  +++..+
T Consensus        84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~  142 (256)
T COG2519          84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF  142 (256)
T ss_pred             HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh
Confidence            3566677899999999999999999999884 55 5999999997654443  455544

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=93.91  E-value=0.079  Score=51.36  Aligned_cols=54  Identities=31%  Similarity=0.344  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709         131 VRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       131 ~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~  186 (319)
                      ..+..+...+...  +.++.++||+|||+|.+++..++ ....+++++|+++.....
T Consensus       236 peTE~LVe~aL~~--l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~  290 (423)
T PRK14966        236 PETEHLVEAVLAR--LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET  290 (423)
T ss_pred             ccHHHHHHHhhhc--cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            3344455544333  23567999999999999998875 457899999998655443

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=93.90  E-value=0.85  Score=41.05  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=68.4

Q ss_pred             ccccCCCcceeeccCCCchHHHHHHHc----C-CCEEEEEecHH-HHHHHH-HHHHhcCCCCcEEEEEcCcccc--ccCC
Q psy8709         196 NKSLFNNKHVIDVGAGTGILSIFAAQA----G-AAKVFAIEKSD-IAYETI-DIIRKNKYDSQIEVYHKLLEDV--ELPV  266 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~gvD~s~-~i~~a~-~~~~~~g~~~~i~~i~~d~~~~--~~~~  266 (319)
                      ......+...+|+|+|+..-+..+...    + ...++.+|+|. .+.... ..+... ..-.+.-+.+|.+.-  .+|.
T Consensus        73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-~~l~v~~l~~~~~~~La~~~~  151 (321)
T COG4301          73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY-PGLEVNALCGDYELALAELPR  151 (321)
T ss_pred             HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-CCCeEeehhhhHHHHHhcccC
Confidence            334444679999999999777766653    2 35899999999 665544 444443 223566667776532  2332


Q ss_pred             CceeEEEe-cc-chhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         267 ESVDIIIS-EW-MGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       267 ~~fD~Iis-~~-~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .+--+++. .. .++  ........++.++...|.||-++++.
T Consensus       152 ~~~Rl~~flGStlGN--~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         152 GGRRLFVFLGSTLGN--LTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             CCeEEEEEecccccC--CChHHHHHHHHHHHhcCCCcceEEEe
Confidence            22233332 21 222  23356678999999999999998854

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=93.89  E-value=0.079  Score=51.25  Aligned_cols=39  Identities=23%  Similarity=0.358  Sum_probs=33.7

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .++++|||+|||+|.+++.++..|+.+|+++|++.....
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~  257 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALD  257 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHH
Confidence            468999999999999999988878999999999865443

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=93.88  E-value=0.09  Score=49.86  Aligned_cols=39  Identities=26%  Similarity=0.465  Sum_probs=31.7

Q ss_pred             CCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      ...+|||+|||+|.+++.+++.. ..+++++|++......
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~  235 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES  235 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            34589999999999999988765 5689999998655544

>KOG1501|consensus

Probab=93.84  E-value=0.052  Score=52.25  Aligned_cols=48  Identities=33%  Similarity=0.481  Sum_probs=36.6

Q ss_pred             HHHHHHHHhcCCCCCC--CeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         134 ESYKSAILNNNSLFNN--KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       134 ~~~~~~i~~n~~~~~~--~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      ....+.|.+..+...+  -.|||+|+|||+++++|++.|+-.++|++.-.
T Consensus        50 ~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~Evfk   99 (636)
T KOG1501|consen   50 LGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFK   99 (636)
T ss_pred             HHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhc
Confidence            3445555555554333  37899999999999999999999999998753

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=93.66  E-value=0.14  Score=45.16  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCC
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGT  182 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~  182 (319)
                      ...++.+|||+|||+|.++..++..+  ..+++++|.+..
T Consensus        48 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~   87 (239)
T PRK00216         48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG   87 (239)
T ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence            34478899999999999999988766  489999998754

>PRK14968 putative methyltransferase; Provisional

Probab=93.64  E-value=0.1  Score=44.29  Aligned_cols=37  Identities=30%  Similarity=0.559  Sum_probs=31.4

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .+++++||+|||+|.++...+.. ...++++|.++...
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~   58 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAV   58 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHH
Confidence            57889999999999999998876 58899999885443

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=93.57  E-value=0.14  Score=45.11  Aligned_cols=48  Identities=23%  Similarity=0.449  Sum_probs=34.4

Q ss_pred             HHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCC
Q psy8709         135 SYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGT  182 (319)
Q Consensus       135 ~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~  182 (319)
                      .....+.....+.++.+|||+|||||..+..++.+ | ...|+++|.++.
T Consensus        59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~  108 (209)
T PF01135_consen   59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPE  108 (209)
T ss_dssp             HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHH
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHH
Confidence            33444555567899999999999999999888855 5 356999998753

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PTZ00146 fibrillarin; Provisional

Probab=93.55  E-value=0.1  Score=48.25  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=32.5

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecC
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKS  180 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d  180 (319)
                      +..+.++.+|||+|||+|.++..++.. + ...|+++|++
T Consensus       127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s  166 (293)
T PTZ00146        127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS  166 (293)
T ss_pred             eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc
Confidence            455789999999999999999998855 4 5789999987

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.53  E-value=0.16  Score=45.23  Aligned_cols=44  Identities=27%  Similarity=0.338  Sum_probs=37.9

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      .++....-..+++.+||+|+.||.++-.+.+.||+.|||+|+..
T Consensus        69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~  112 (245)
T COG1189          69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY  112 (245)
T ss_pred             HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccC
Confidence            34444455789999999999999999999999999999999864

>PRK11524 putative methyltransferase; Provisional

Probab=93.50  E-value=0.2  Score=46.12  Aligned_cols=57  Identities=21%  Similarity=0.145  Sum_probs=45.8

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK  245 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~  245 (319)
                      ..+.+.++.... .+|..|||.-||+|..+..+.+.| .+.+|+|+++ .++.|.+++..
T Consensus       195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh
Confidence            555555554443 567899999999999999888885 4999999999 99999988754

>PRK06922 hypothetical protein; Provisional

Probab=93.49  E-value=0.14  Score=52.29  Aligned_cols=42  Identities=24%  Similarity=0.495  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~  186 (319)
                      .+.++.+|||+|||+|.++...+ ......++|+|++......
T Consensus       415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~  457 (677)
T PRK06922        415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT  457 (677)
T ss_pred             hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            45578999999999999887766 4567899999998754433

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=93.44  E-value=0.087  Score=48.61  Aligned_cols=39  Identities=28%  Similarity=0.352  Sum_probs=32.1

Q ss_pred             CCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|.+++.+++.. ..+++++|+++.....
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~  160 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAV  160 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            45789999999999999999654 6799999998655444

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PHA03411 putative methyltransferase; Provisional

Probab=93.44  E-value=0.31  Score=44.70  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcc
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPI  184 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~  184 (319)
                      ...+|||+|||+|.+++.++.. +..+++++|+++...
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al  101 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA  101 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            4568999999999999888754 467999999986433

>KOG2904|consensus

Probab=93.41  E-value=0.18  Score=45.86  Aligned_cols=45  Identities=29%  Similarity=0.451  Sum_probs=36.4

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~  186 (319)
                      +|...+.+..++|+|||||-+++... .++...++|+|.+..+..-
T Consensus       142 ~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~L  187 (328)
T KOG2904|consen  142 NNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKL  187 (328)
T ss_pred             hhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHH
Confidence            44556777799999999999999876 7779999999998655443

>PHA03412 putative methyltransferase; Provisional

Probab=93.40  E-value=0.057  Score=48.32  Aligned_cols=39  Identities=23%  Similarity=0.293  Sum_probs=31.5

Q ss_pred             CCCeEEEecCCCChhhHHHHhc----CCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA----GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~----ga~~V~avd~d~~~~~~  186 (319)
                      .+.+|||+|||+|.+++.+++.    ....++++|+++.....
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~   91 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL   91 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence            3679999999999999988853    34589999999765444

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=93.40  E-value=0.11  Score=44.78  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=28.3

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ++.+|||+|||+|.++...+..+...++++|.+..
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~   47 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQD   47 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHH
Confidence            67899999999999988777655557789887643

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00740 methyltransferase, putative

Probab=93.39  E-value=0.11  Score=46.40  Aligned_cols=38  Identities=21%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             CCCCeEEEecCCCChhhHHHHhc---CCceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQA---GAAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~---ga~~V~avd~d~~~~  184 (319)
                      .++.+|||+|||+|.++...++.   ...+++++|.++...
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml   92 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV   92 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH
Confidence            47789999999999999888753   367899999976444

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=93.32  E-value=0.065  Score=46.05  Aligned_cols=59  Identities=39%  Similarity=0.581  Sum_probs=50.6

Q ss_pred             hhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         121 HIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       121 ~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .||...+.|..|...+..+|..-..    .++.|+|+|||++++.|+.. |.+|+|++.++...
T Consensus         9 ~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a   67 (252)
T COG4076           9 SYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA   67 (252)
T ss_pred             hhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHH
Confidence            3677899999999999998866543    78999999999999999988 99999999987543

>PHA01634 hypothetical protein

Probab=93.31  E-value=0.24  Score=39.98  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=53.5

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAA  225 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~  225 (319)
                      ...+++|+|+|++-|--++.-+..||+.|++++.++.      +++....++..   -.|.|=|-|.|.+..   ..|..
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~k------l~k~~een~k~---nnI~DK~v~~~eW~~---~Y~~~   93 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEK------LRKKWEEVCAY---FNICDKAVMKGEWNG---EYEDV   93 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHH------HHHHHHHHhhh---heeeeceeecccccc---cCCCc
Confidence            4689999999999999999999999999999998642      22222222222   278888888875432   34444


Q ss_pred             EEEEEecHH
Q psy8709         226 KVFAIEKSD  234 (319)
Q Consensus       226 ~V~gvD~s~  234 (319)
                      .+.-+|-..
T Consensus        94 Di~~iDCeG  102 (156)
T PHA01634         94 DIFVMDCEG  102 (156)
T ss_pred             ceEEEEccc
Confidence            566565543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=93.30  E-value=0.24  Score=43.05  Aligned_cols=37  Identities=35%  Similarity=0.537  Sum_probs=30.7

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCC--ceEEeeecCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSGT  182 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga--~~V~avd~d~~  182 (319)
                      ..++.+|||+|||+|.++...++.+.  .+++++|.++.
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~   75 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE   75 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH
Confidence            44789999999999999988886665  58999998753

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=93.17  E-value=0.47  Score=42.88  Aligned_cols=120  Identities=12%  Similarity=0.173  Sum_probs=68.0

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHH----c--CCCEEEEEecHH--------------------------
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ----A--GAAKVFAIEKSD--------------------------  234 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~----~--g~~~V~gvD~s~--------------------------  234 (319)
                      .++...+...+...-...|+|+||-.|..++.++.    .  ...++++.|.-+                          
T Consensus        60 ~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~  139 (248)
T PF05711_consen   60 DNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLA  139 (248)
T ss_dssp             HHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCT
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccc
Confidence            44555555555444557899999999987765543    2  245788887421                          


Q ss_pred             -HHHHHHHHHHhcCC-CCcEEEEEcCccccc--cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         235 -IAYETIDIIRKNKY-DSQIEVYHKLLEDVE--LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       235 -~i~~a~~~~~~~g~-~~~i~~i~~d~~~~~--~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                       ..+..++++...|+ .++++++.|.+.+.-  .|.+++-++..+.=.|     +.-...|..++..|.|||+++++...
T Consensus       140 ~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY-----esT~~aLe~lyprl~~GGiIi~DDY~  214 (248)
T PF05711_consen  140 VSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY-----ESTKDALEFLYPRLSPGGIIIFDDYG  214 (248)
T ss_dssp             HHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH-----HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             cCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch-----HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence             12223333333343 468999999986542  2345565655543222     34467789999999999999998755


Q ss_pred             c
Q psy8709         311 L  311 (319)
Q Consensus       311 ~  311 (319)
                      .
T Consensus       215 ~  215 (248)
T PF05711_consen  215 H  215 (248)
T ss_dssp             T
T ss_pred             C
Confidence            4

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=93.16  E-value=0.17  Score=45.95  Aligned_cols=45  Identities=24%  Similarity=0.332  Sum_probs=38.2

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .+.|.......++.+||++|+|.|.++...++.+++ |+++|+|..
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~   63 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRR   63 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHH
Confidence            445556667778999999999999999999998877 999999953

>TIGR00536 hemK_fam HemK family putative methylases

Probab=93.15  E-value=0.15  Score=47.02  Aligned_cols=37  Identities=27%  Similarity=0.476  Sum_probs=30.9

Q ss_pred             CeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         150 KHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       150 ~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      .+|||+|||+|.+++..+... ..+++++|++......
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~  153 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAV  153 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            689999999999999998665 5799999998655443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.12  E-value=0.21  Score=43.51  Aligned_cols=52  Identities=17%  Similarity=0.194  Sum_probs=38.2

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHH
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETI  240 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~  240 (319)
                      ..+.+.++... ..++..|||.-||+|..+..+.+.|- +.+|+|+++ ..+.|.
T Consensus       178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~  230 (231)
T PF01555_consen  178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAK  230 (231)
T ss_dssp             HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhc
Confidence            45555555444 34578999999999999999888854 899999999 777765

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.06  E-value=0.22  Score=46.87  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=33.4

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCCcc
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGTPI  184 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~~~  184 (319)
                      ......++.+|||+|||+|.++..+++..  ...|+++|.++...
T Consensus        74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l  118 (322)
T PRK13943         74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC  118 (322)
T ss_pred             HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH
Confidence            33456688999999999999998888543  34799999986443

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=93.06  E-value=0.11  Score=47.24  Aligned_cols=42  Identities=26%  Similarity=0.476  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHh-cCC-ceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQ-AGA-AKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~-~ga-~~V~avd~d~~~~~~  186 (319)
                      .+.++.+|||+|||+|...+.+++ .+. .+++++|+++.....
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~  117 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAK  117 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHH
Confidence            356899999999999998887764 454 589999997654333

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=93.03  E-value=0.43  Score=40.39  Aligned_cols=104  Identities=18%  Similarity=0.153  Sum_probs=62.7

Q ss_pred             ccCCCchHHHHHHHc-C-CCEEEEEecHH---HHHH---HHHHHHhcCCCCcEEEEEcCccccc----cCCCceeEEEec
Q psy8709         208 VGAGTGILSIFAAQA-G-AAKVFAIEKSD---IAYE---TIDIIRKNKYDSQIEVYHKLLEDVE----LPVESVDIIISE  275 (319)
Q Consensus       208 iGcGtG~ls~~la~~-g-~~~V~gvD~s~---~i~~---a~~~~~~~g~~~~i~~i~~d~~~~~----~~~~~fD~Iis~  275 (319)
                      ||=|.=.++..+++. + ...+++.-...   ..+.   +..++.......-.....-|+..+.    .....||.|+.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            555555666777774 4 55666665443   2222   2233333211111223344665553    245789999999


Q ss_pred             cchhhh----------cchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         276 WMGYFL----------LFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       276 ~~~~~l----------~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .|+-.-          .+...+..++..+.++|+++|.+.++.++-
T Consensus        83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~  128 (166)
T PF10354_consen   83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG  128 (166)
T ss_pred             CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            875431          112457889999999999999999887764

>PRK13699 putative methylase; Provisional

Probab=93.03  E-value=0.28  Score=43.71  Aligned_cols=58  Identities=19%  Similarity=0.190  Sum_probs=45.1

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN  246 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~  246 (319)
                      ..+.+.++.... .++..|||.-||+|.....+.+.|- +.+|+|+++ ..+.+.++++..
T Consensus       150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence            444455554433 4678999999999999998888865 899999999 888888877653

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=93.02  E-value=0.46  Score=38.86  Aligned_cols=43  Identities=23%  Similarity=0.337  Sum_probs=35.6

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHh-----cCCceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQ-----AGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~-----~ga~~V~avd~d~~~~~~  186 (319)
                      ....+..+|+|+|||.|.++...+.     .....|.++|.++.....
T Consensus        21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~   68 (141)
T PF13679_consen   21 GESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES   68 (141)
T ss_pred             hccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence            3456788999999999999999987     568899999999765444

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=92.89  E-value=0.071  Score=40.44  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=25.1

Q ss_pred             EEecCCCChhhHHHH-hcCCceEEeeecCCCcc
Q psy8709         153 IDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       153 LD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~  184 (319)
                      ||+|||+|.++.... .....+++++|+++...
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l   33 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML   33 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            799999999987776 55788999999998766

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=92.78  E-value=0.13  Score=44.44  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=30.2

Q ss_pred             CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcc
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPI  184 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~  184 (319)
                      ....+||+|||+|.+++..++. ....++|+|++....
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l   53 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV   53 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH
Confidence            4568999999999999888854 477899999986543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02672 methionine S-methyltransferase

Probab=92.70  E-value=0.12  Score=55.83  Aligned_cols=41  Identities=27%  Similarity=0.562  Sum_probs=34.0

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      .+++++|||+|||||.+++.+++.. ..+++++|+++.....
T Consensus       116 ~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~  157 (1082)
T PLN02672        116 IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKV  157 (1082)
T ss_pred             cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            3567899999999999999988654 6899999999866544

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=92.60  E-value=0.14  Score=39.04  Aligned_cols=34  Identities=26%  Similarity=0.539  Sum_probs=24.3

Q ss_pred             EEEecCCCChhhHHHHhc---C-CceEEeeecCCCccc
Q psy8709         152 VIDVGAGTGILSIFAAQA---G-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       152 vLD~G~GsG~l~i~aa~~---g-a~~V~avd~d~~~~~  185 (319)
                      |||+|||+|.........   + ..+++++|++.....
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~   38 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLE   38 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHH
Confidence            799999999999988855   3 389999999865443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=92.45  E-value=0.16  Score=43.74  Aligned_cols=36  Identities=33%  Similarity=0.475  Sum_probs=30.1

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .++.++||+=||||.++++|...||++|+.+|.+..
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~   76 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRK   76 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HH
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHH
Confidence            689999999999999999999999999999999754

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=92.45  E-value=0.23  Score=48.51  Aligned_cols=41  Identities=24%  Similarity=0.334  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ...++.+|||+|||+|.+++.+++. +.+|+++|++......
T Consensus       289 ~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~  329 (431)
T TIGR00479       289 ELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEK  329 (431)
T ss_pred             ccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHH
Confidence            4556789999999999999999875 4689999998655443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=92.34  E-value=0.15  Score=45.54  Aligned_cols=39  Identities=26%  Similarity=0.449  Sum_probs=31.5

Q ss_pred             CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      .+.+|||+|||+|.+++.++.. ....++++|+++.....
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~  126 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAV  126 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            4568999999999999999865 46799999998655443

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=92.30  E-value=0.17  Score=46.77  Aligned_cols=69  Identities=29%  Similarity=0.339  Sum_probs=49.4

Q ss_pred             ceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc---cCCCceeEEEeccchhh
Q psy8709         204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE---LPVESVDIIISEWMGYF  280 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---~~~~~fD~Iis~~~~~~  280 (319)
                      +++|+-||-|.++.-+.+.|...+.++|+++   .|.+..+.|-  +  ....+|+.++.   ++. .+|+++..++...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~---~a~~~y~~N~--~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~   73 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDP---DACETYKANF--P--EVICGDITEIDPSDLPK-DVDLLIGGPPCQG   73 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSH---HHHHHHHHHH--T--EEEESHGGGCHHHHHHH-T-SEEEEE---TT
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCH---HHHHhhhhcc--c--ccccccccccccccccc-cceEEEeccCCce
Confidence            6899999999999999999988999999999   3333333331  1  78889998875   443 5999998876544

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=92.17  E-value=0.68  Score=44.33  Aligned_cols=105  Identities=20%  Similarity=0.134  Sum_probs=63.1

Q ss_pred             ccccCCCcceeeccCCC-chHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc-----c-cc-C
Q psy8709         196 NKSLFNNKHVIDVGAGT-GILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED-----V-EL-P  265 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~-----~-~~-~  265 (319)
                      .....++.+||..|||. |..+..+++. |..++++++.++ ..+.+++..   +.    .++...-.+     + .+ +
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~----~vi~~~~~~~~~~~l~~~~~  251 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA----ETINFEEVDDVVEALRELTG  251 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc----EEEcCCcchHHHHHHHHHcC
Confidence            34566788999999987 7788888874 655799999998 666555431   21    222211111     1 11 2


Q ss_pred             CCceeEEEeccchhh------------hcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         266 VESVDIIISEWMGYF------------LLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~------------l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ...+|+|+....+..            +....+....+.++.+.|+|+|.++.-
T Consensus       252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  305 (386)
T cd08283         252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII  305 (386)
T ss_pred             CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence            236999986421110            011122245678888999999998843

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG0024|consensus

Probab=92.07  E-value=0.28  Score=45.71  Aligned_cols=96  Identities=17%  Similarity=0.152  Sum_probs=62.5

Q ss_pred             ccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC--cccc------ccCC
Q psy8709         198 SLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL--LEDV------ELPV  266 (319)
Q Consensus       198 ~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d--~~~~------~~~~  266 (319)
                      ....+.+||-+|+| .|.++...++ .|+++|+.+|+++ -++.|++    .|. +.+......  ...+      .+..
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga-~~~~~~~~~~~~~~~~~~v~~~~g~  240 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGA-TVTDPSSHKSSPQELAELVEKALGK  240 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCC-eEEeeccccccHHHHHHHHHhhccc
Confidence            45678899999999 6788888888 5999999999999 7777776    333 112111111  1111      1222


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ..+|+.+...-         ....++.....+++||.++.-
T Consensus       241 ~~~d~~~dCsG---------~~~~~~aai~a~r~gGt~vlv  272 (354)
T KOG0024|consen  241 KQPDVTFDCSG---------AEVTIRAAIKATRSGGTVVLV  272 (354)
T ss_pred             cCCCeEEEccC---------chHHHHHHHHHhccCCEEEEe
Confidence            45888885332         234455566788999997743

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=92.04  E-value=0.35  Score=42.42  Aligned_cols=45  Identities=27%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~  186 (319)
                      ...++.++..++|+|||.|-+-+.+| ..+.++.+|+|+.+.....
T Consensus        36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~   81 (205)
T PF08123_consen   36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDL   81 (205)
T ss_dssp             HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHH
T ss_pred             HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHH
Confidence            34567789999999999999988887 7789999999999766554

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=92.02  E-value=0.15  Score=47.59  Aligned_cols=37  Identities=27%  Similarity=0.400  Sum_probs=31.1

Q ss_pred             CeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         150 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       150 ~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      .+|||+|||+|.+++..+.. ...+++++|+++.....
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~  172 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAV  172 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            68999999999999998865 46799999998765554

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=92.00  E-value=0.33  Score=44.25  Aligned_cols=40  Identities=18%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             CCCCeEEEecCCCCh----hhHHHHhcC------CceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGI----LSIFAAQAG------AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~----l~i~aa~~g------a~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||||-    +++.++..+      ..+|+|+|++......
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~  147 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK  147 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence            356799999999996    565555432      3689999999755443

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=91.93  E-value=0.19  Score=47.21  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=29.9

Q ss_pred             CCCeEEEecCCCChhhHHH-HhcCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFA-AQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~a-a~~ga~~V~avd~d~~~~~~  186 (319)
                      .+.++||+|||+|.+..+. ++....+++|+|+++.....
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~  153 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALAS  153 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHH
Confidence            5679999999998665554 45557789999998765554

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=91.79  E-value=0.22  Score=43.73  Aligned_cols=36  Identities=31%  Similarity=0.416  Sum_probs=29.3

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCC
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGT  182 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~  182 (319)
                      ..+++|||+|||+|.++...+..+ ..+++++|.+..
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~   69 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAG   69 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHH
Confidence            456899999999999998888666 566899998753

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.60  E-value=0.31  Score=46.32  Aligned_cols=94  Identities=24%  Similarity=0.304  Sum_probs=59.3

Q ss_pred             CCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC-cc-cc-ccCC-CceeEE
Q psy8709         200 FNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL-LE-DV-ELPV-ESVDII  272 (319)
Q Consensus       200 ~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d-~~-~~-~~~~-~~fD~I  272 (319)
                      .++.+|+=+||| .|.++..+++ .|+.+|+.+|.++ -++.|++....    +.+.....+ .. .. .... ..+|++
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~v  242 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVV  242 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEE
Confidence            334489999999 6777777777 5889999999999 77777653211    111111111 10 01 1222 369999


Q ss_pred             EeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +-.. +        ....+..+.++++|||.+++
T Consensus       243 ie~~-G--------~~~~~~~ai~~~r~gG~v~~  267 (350)
T COG1063         243 IEAV-G--------SPPALDQALEALRPGGTVVV  267 (350)
T ss_pred             EECC-C--------CHHHHHHHHHHhcCCCEEEE
Confidence            8432 1        23466777889999999884

>KOG2651|consensus

Probab=91.60  E-value=0.47  Score=45.13  Aligned_cols=55  Identities=27%  Similarity=0.297  Sum_probs=39.7

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHH
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETID  241 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~  241 (319)
                      +.+.+.+-+......-..|+|+|+|.|.++.+++-...-.|.+||-|. ..+.|++
T Consensus       139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            344444444444444578999999999999999875444999999999 6666554

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=91.59  E-value=0.21  Score=36.65  Aligned_cols=33  Identities=33%  Similarity=0.537  Sum_probs=28.3

Q ss_pred             eEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         151 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       151 ~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      +++|+|||+|.++...+.....+++++|.+...
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~   33 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVA   33 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHH
Confidence            489999999999988888778899999987544

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.59  E-value=0.054  Score=45.06  Aligned_cols=50  Identities=26%  Similarity=0.265  Sum_probs=38.2

Q ss_pred             cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ..+.+++.|+|.++-+.-++.. .....+++++++.|||||++-+.-+...
T Consensus        41 ~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriAvPdl~   90 (185)
T COG4627          41 SMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIAVPDLK   90 (185)
T ss_pred             ccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence            4567789999998766555544 4456789999999999999987766543

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=91.49  E-value=0.26  Score=43.33  Aligned_cols=33  Identities=27%  Similarity=0.252  Sum_probs=26.8

Q ss_pred             CeEEEecCCCChhhHHHHhc-CCceEEeeecCCC
Q psy8709         150 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGT  182 (319)
Q Consensus       150 ~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~  182 (319)
                      ++|||+|||+|.....+++. +..+++++|+++.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~   34 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPE   34 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHH
Confidence            47999999999998888754 4678999998643

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=91.43  E-value=0.16  Score=44.74  Aligned_cols=39  Identities=18%  Similarity=0.217  Sum_probs=32.5

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||+|.-++..|..|. .|+|+|+++.....
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~   71 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQ   71 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence            3678999999999999999997664 69999998765553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=91.42  E-value=2.5  Score=41.39  Aligned_cols=94  Identities=18%  Similarity=0.171  Sum_probs=63.9

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccc------------------cCC
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKS------------------LFN  201 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~------------------~~~  201 (319)
                      +.......++.++||+=||.|.+++..| ....+|+|+|+.+..+.....+....+..+                  ..+
T Consensus       285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~  363 (432)
T COG2265         285 ALEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKP  363 (432)
T ss_pred             HHHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCC
Confidence            3333445678899999999999999999 567899999999877766554444433321                  123


Q ss_pred             Ccceeec-cCCCc-hHHHHHHHcCCCEEEEEecHH
Q psy8709         202 NKHVIDV-GAGTG-ILSIFAAQAGAAKVFAIEKSD  234 (319)
Q Consensus       202 ~~~VLDi-GcGtG-~ls~~la~~g~~~V~gvD~s~  234 (319)
                      +..|+|. .+|-+ .+...+++.+..+|+.|-.+|
T Consensus       364 d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP  398 (432)
T COG2265         364 DVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNP  398 (432)
T ss_pred             CEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCH
Confidence            3456664 45555 556666666666777777676

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=91.38  E-value=0.24  Score=42.43  Aligned_cols=50  Identities=24%  Similarity=0.275  Sum_probs=35.0

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-Cce---------EEeeecCCCcccH
Q psy8709         137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAK---------VFAIEKSGTPIRT  186 (319)
Q Consensus       137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~---------V~avd~d~~~~~~  186 (319)
                      ..++..-..+.++..+||.-||||.+.++++..+ ...         ++|.|++......
T Consensus        17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~   76 (179)
T PF01170_consen   17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRG   76 (179)
T ss_dssp             HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHH
T ss_pred             HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHH
Confidence            4445555667789999999999999999999665 333         7899998766544

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK04457 spermidine synthase; Provisional

Probab=91.20  E-value=0.86  Score=41.47  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=30.9

Q ss_pred             CCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCccc
Q psy8709         148 NNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~  185 (319)
                      ++++||++|||+|.++...+ .....+++++|+++....
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~  104 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIA  104 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence            56899999999999998776 455788999999865433

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=91.16  E-value=0.41  Score=45.35  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=29.8

Q ss_pred             CCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTP  183 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~  183 (319)
                      .++.+|||+|||+|.++...++ .+...++++|.++..
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~m  149 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ  149 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHH
Confidence            3678999999999999887764 456789999987543

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=91.06  E-value=0.23  Score=40.18  Aligned_cols=35  Identities=40%  Similarity=0.519  Sum_probs=28.7

Q ss_pred             eEEEecCCCChhhHHHHhcCC-ceEEeeecCCCccc
Q psy8709         151 HVIDVGAGTGILSIFAAQAGA-AKVFAIEKSGTPIR  185 (319)
Q Consensus       151 ~vLD~G~GsG~l~i~aa~~ga-~~V~avd~d~~~~~  185 (319)
                      ++||+|||.|.+++..++.++ .+++++|.++....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~   36 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYE   36 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence            589999999999999987775 48999998764433

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=91.01  E-value=0.38  Score=43.72  Aligned_cols=42  Identities=26%  Similarity=0.444  Sum_probs=35.3

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      .|.......++.+|+++|.|.|.++-.....+ ++++++|.|+
T Consensus        21 ~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~   62 (262)
T PF00398_consen   21 KIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDP   62 (262)
T ss_dssp             HHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSH
T ss_pred             HHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcH
Confidence            33344455589999999999999999999888 9999999985

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=90.90  E-value=0.41  Score=43.26  Aligned_cols=48  Identities=23%  Similarity=0.341  Sum_probs=34.5

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcccH
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~~  186 (319)
                      +|.....+.||.+|++.|+|||.++...++ .| ..+|+..|+...+...
T Consensus        31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~   80 (247)
T PF08704_consen   31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEK   80 (247)
T ss_dssp             HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHH
Confidence            555667899999999999999999999884 44 7899999997655443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=90.88  E-value=0.21  Score=44.23  Aligned_cols=39  Identities=18%  Similarity=0.255  Sum_probs=32.4

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||+|.-.+..|..|. .|+|+|+++.....
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~   74 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ   74 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence            3567999999999999999988665 69999998765554

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=90.87  E-value=0.36  Score=47.15  Aligned_cols=42  Identities=19%  Similarity=0.239  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      ...++.+|||+|||+|..++.++..+ ...|+++|.+..+...
T Consensus       241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~  283 (427)
T PRK10901        241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLER  283 (427)
T ss_pred             CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            45689999999999999999988665 4799999998765444

>TIGR03438 probable methyltransferase

Probab=90.83  E-value=0.57  Score=43.52  Aligned_cols=36  Identities=17%  Similarity=0.267  Sum_probs=30.4

Q ss_pred             CCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCCc
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGTP  183 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~~  183 (319)
                      ++.+|||+|||||..+.......  ..+++++|++...
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~m  100 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADA  100 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHH
Confidence            67899999999999998877554  5789999998754

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=90.75  E-value=0.28  Score=43.24  Aligned_cols=55  Identities=22%  Similarity=0.282  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709         131 VRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       131 ~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~  186 (319)
                      .|+....+.+ ....+.....|.|+|||.|..+-..+ ++....++|+|.++.....
T Consensus        14 eRtRPa~dLl-a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~   69 (257)
T COG4106          14 ERTRPARDLL-ARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAK   69 (257)
T ss_pred             hccCcHHHHH-hhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHH
Confidence            3444444433 33455677799999999999987766 7789999999988654443

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=90.75  E-value=0.4  Score=44.89  Aligned_cols=69  Identities=23%  Similarity=0.203  Sum_probs=49.4

Q ss_pred             eeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccchh
Q psy8709         205 VIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMGY  279 (319)
Q Consensus       205 VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~  279 (319)
                      |+|+.||.|.++.-+.+.|..-+.++|+++   .|.+..+.|-. +  .++.+|+.++... ...+|+++..++..
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~---~a~~ty~~N~~-~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq   70 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDK---YAQKTYEANFG-N--KVPFGDITKISPSDIPDFDILLGGFPCQ   70 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCH---HHHHHHHHhCC-C--CCCccChhhhhhhhCCCcCEEEecCCCc
Confidence            689999999999999999987788999999   33333333321 2  4566888776521 23689999877644

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=90.50  E-value=0.4  Score=41.88  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=28.8

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGT  182 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~  182 (319)
                      ..++.+|+|+-||-|.+++.+|+.+ ++.|+|.|+++.
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~  136 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD  136 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHH
Confidence            5689999999999999999999754 888999999854

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=90.37  E-value=0.35  Score=44.16  Aligned_cols=39  Identities=23%  Similarity=0.445  Sum_probs=28.8

Q ss_pred             CCCeEEEecCCCChhhHHHHhc-C---CceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA-G---AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~-g---a~~V~avd~d~~~~~~  186 (319)
                      .+.+|||+|||+|.++...+.. .   ...++|+|++......
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~  127 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY  127 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH
Confidence            4578999999999998776643 2   2378999998654443

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=90.34  E-value=0.56  Score=43.52  Aligned_cols=41  Identities=24%  Similarity=0.251  Sum_probs=32.0

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeec
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEK  179 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~  179 (319)
                      .+.......++.++||+|||+|.+++.+++.. ..+++++|.
T Consensus       140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~  181 (306)
T TIGR02716       140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL  181 (306)
T ss_pred             HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec
Confidence            34444556678999999999999999888654 567888886

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=90.30  E-value=0.95  Score=40.82  Aligned_cols=72  Identities=18%  Similarity=0.231  Sum_probs=43.9

Q ss_pred             CcceeeccCCCchHHHHHHHc---------CCCEEEEEecHH-HHHHHHHHHHhc-----CCCCcEEEEEcCccccccCC
Q psy8709         202 NKHVIDVGAGTGILSIFAAQA---------GAAKVFAIEKSD-IAYETIDIIRKN-----KYDSQIEVYHKLLEDVELPV  266 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~---------g~~~V~gvD~s~-~i~~a~~~~~~~-----g~~~~i~~i~~d~~~~~~~~  266 (319)
                      .-+|+|+|+|+|.++..+++.         ...+++-||.|+ +.+..++.+...     ....++.+ ..++.+.+   
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p---   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP---   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence            369999999999999887763         124899999999 776666666542     13345666 23443332   


Q ss_pred             CceeEEEeccch
Q psy8709         267 ESVDIIISEWMG  278 (319)
Q Consensus       267 ~~fD~Iis~~~~  278 (319)
                       ..-+|++|-.+
T Consensus        95 -~~~~iiaNE~~  105 (252)
T PF02636_consen   95 -FPGFIIANELF  105 (252)
T ss_dssp             -CCEEEEEESSG
T ss_pred             -CCEEEEEeeeh
Confidence             23455555443

; PDB: 4F3N_A 1ZKD_B.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=90.30  E-value=0.74  Score=39.71  Aligned_cols=40  Identities=33%  Similarity=0.488  Sum_probs=35.9

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .++|.++||+=+|||.++++|..-||.+++.+|.+.....
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~   80 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVK   80 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHH
Confidence            4899999999999999999999999999999999854433

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=90.11  E-value=0.67  Score=42.02  Aligned_cols=72  Identities=14%  Similarity=0.218  Sum_probs=55.2

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      .+.++...+|+|+-.|.++..+.+++- .|++||..+|.+...    ..   ..|+-...|...+.......|..+|+.+
T Consensus       208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~----dt---g~v~h~r~DGfk~~P~r~~idWmVCDmV  279 (358)
T COG2933         208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM----DT---GQVTHLREDGFKFRPTRSNIDWMVCDMV  279 (358)
T ss_pred             hhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh----cc---cceeeeeccCcccccCCCCCceEEeehh
Confidence            356788999999999999999999876 999999999533322    22   4677777777776544478999998764

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=89.94  E-value=0.77  Score=47.44  Aligned_cols=103  Identities=12%  Similarity=0.100  Sum_probs=62.0

Q ss_pred             cceeeccCCCchHHHHHHH-c-------C-----CCEEEEEecHH-HHHHHHH--------------HHHh-----cCC-
Q psy8709         203 KHVIDVGAGTGILSIFAAQ-A-------G-----AAKVFAIEKSD-IAYETID--------------IIRK-----NKY-  248 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~-~-------g-----~~~V~gvD~s~-~i~~a~~--------------~~~~-----~g~-  248 (319)
                      -+|+|+|-|+|.......+ .       +     .-+++++|..+ ..+...+              ....     .|+ 
T Consensus        59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~  138 (662)
T PRK01747         59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH  138 (662)
T ss_pred             EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence            5899999999987655442 1       1     23899999754 2212111              1111     121 


Q ss_pred             -----CC--cEEEEEcCcccccc-CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         249 -----DS--QIEVYHKLLEDVEL-PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       249 -----~~--~i~~i~~d~~~~~~-~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                           ..  ++++..||+.+.-. -...||+++.++....-..+---..+++.+.++++|||.+.
T Consensus       139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~  203 (662)
T PRK01747        139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA  203 (662)
T ss_pred             EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence                 01  45567788765421 12569999987643221222223678999999999999988

>KOG1271|consensus

Probab=89.90  E-value=0.47  Score=40.78  Aligned_cols=36  Identities=28%  Similarity=0.496  Sum_probs=30.1

Q ss_pred             eEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         151 HVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       151 ~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      +|||+|||+|.+-...++-| ...+.|+|..+.++..
T Consensus        70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L  106 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL  106 (227)
T ss_pred             ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence            99999999999999999888 5559999987654443

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=89.80  E-value=0.55  Score=39.43  Aligned_cols=98  Identities=18%  Similarity=0.127  Sum_probs=58.2

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEE-EEEcCcc-ccccCCCceeEEEeccch
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIE-VYHKLLE-DVELPVESVDIIISEWMG  278 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~-~i~~d~~-~~~~~~~~fD~Iis~~~~  278 (319)
                      +++.+-+|...-..-..+.+.|++++..+|.++ -++.-        +.+++. +...|+. +...-.++||.+.|-...
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~--------~~dr~ssi~p~df~~~~~~y~~~fD~~as~~si   73 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE--------FRDRLSSILPVDFAKNWQKYAGSFDFAASFSSI   73 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc--------cccccccccHHHHHHHHHHhhccchhhheechh
Confidence            467788888887777788888999999999887 22111        001111 1111111 111123678888764332


Q ss_pred             hhh---------cchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         279 YFL---------LFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       279 ~~l---------~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .+.         .+..+ .+.+.++.++|||||.+++..
T Consensus        74 Eh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~v  111 (177)
T PF03269_consen   74 EHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGV  111 (177)
T ss_pred             ccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEe
Confidence            111         11223 345678889999999999654

>KOG2078|consensus

Probab=89.80  E-value=0.39  Score=46.27  Aligned_cols=88  Identities=23%  Similarity=0.231  Sum_probs=65.9

Q ss_pred             CceEEeeecCCCcccH--HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcC
Q psy8709         171 AAKVFAIEKSGTPIRT--ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNK  247 (319)
Q Consensus       171 a~~V~avd~d~~~~~~--~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g  247 (319)
                      ....+-.|.....|.+  ....+.+..  -..+|..|-|+.||.|-++..++..+ +.|++-|.++ +++....+++.|.
T Consensus       219 ~~~~Fk~DfskVYWnsRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNk  295 (495)
T KOG2078|consen  219 GGERFKFDFSKVYWNSRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNK  295 (495)
T ss_pred             CCeeEEEecceEEeeccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccc
Confidence            4444555555555554  223333333  35567899999999999999999987 5999999999 9999999999888


Q ss_pred             CCCc-EEEEEcCccc
Q psy8709         248 YDSQ-IEVYHKLLED  261 (319)
Q Consensus       248 ~~~~-i~~i~~d~~~  261 (319)
                      +.+. ++++..|+..
T Consensus       296 v~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  296 VDPSAIEIFNMDAKD  310 (495)
T ss_pred             cchhheeeecccHHH
Confidence            8665 8888877644

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=89.68  E-value=0.48  Score=44.70  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      ...++++++|+||++|.++..+.+.|+ +|+|+|..+
T Consensus       208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~  243 (357)
T PRK11760        208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP  243 (357)
T ss_pred             ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence            357899999999999999999999998 999999654

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=89.58  E-value=0.42  Score=46.00  Aligned_cols=38  Identities=24%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCccc
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIR  185 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~  185 (319)
                      .+..+||+|||+|.+.+.+|+. ....++|+|++.....
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~  160 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIE  160 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHH
Confidence            4679999999999999998855 4789999999865443

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=89.36  E-value=0.59  Score=45.88  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=34.0

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhc--CCceEEeeecCCCccc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSGTPIR  185 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~--ga~~V~avd~d~~~~~  185 (319)
                      ....++.+|||+|||+|..++.++..  +..+++++|++..+..
T Consensus       246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~  289 (444)
T PRK14902        246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLK  289 (444)
T ss_pred             hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence            34567899999999999999988854  3679999999865543

>PRK10458 DNA cytosine methylase; Provisional

Probab=89.23  E-value=1.8  Score=42.79  Aligned_cols=75  Identities=19%  Similarity=0.259  Sum_probs=51.5

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcC-CCCcEEEEEcCccccccC---------------
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNK-YDSQIEVYHKLLEDVELP---------------  265 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g-~~~~i~~i~~d~~~~~~~---------------  265 (319)
                      ..+++|+-||.|.++.-+-..|...|.++|+++   .|.+..+.|- ..+....+.+|+.++...               
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~---~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~  164 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK---HAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIR  164 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechH---HHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhh
Confidence            358999999999999999888888889999999   3443343332 112344556677665321               


Q ss_pred             --CCceeEEEeccchh
Q psy8709         266 --VESVDIIISEWMGY  279 (319)
Q Consensus       266 --~~~fD~Iis~~~~~  279 (319)
                        ...+|+++..+++.
T Consensus       165 ~~~p~~DvL~gGpPCQ  180 (467)
T PRK10458        165 QHIPDHDVLLAGFPCQ  180 (467)
T ss_pred             ccCCCCCEEEEcCCCC
Confidence              13589998877654

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=89.18  E-value=2.7  Score=35.47  Aligned_cols=98  Identities=13%  Similarity=0.118  Sum_probs=64.4

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccc-ccC---CCceeEEEecc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV-ELP---VESVDIIISEW  276 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~~~---~~~fD~Iis~~  276 (319)
                      .+.+|+-|||=+-...+.-......+++-.|.+.       +....+  .+ +|+.-|.... .++   .++||+|++++
T Consensus        25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~~~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DP   94 (162)
T PF10237_consen   25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQFG--GD-EFVFYDYNEPEELPEELKGKFDVVVIDP   94 (162)
T ss_pred             CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHhcC--Cc-ceEECCCCChhhhhhhcCCCceEEEECC
Confidence            3468999998887665554223445899999998       111111  23 3444444332 111   37999999999


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ++   ..++-..++...+..++++++.++..+...
T Consensus        95 PF---l~~ec~~k~a~ti~~L~k~~~kii~~Tg~~  126 (162)
T PF10237_consen   95 PF---LSEECLTKTAETIRLLLKPGGKIILCTGEE  126 (162)
T ss_pred             CC---CCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence            96   455667777788888889999998776543

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=88.97  E-value=0.92  Score=42.99  Aligned_cols=71  Identities=20%  Similarity=0.189  Sum_probs=44.9

Q ss_pred             EEeeecCCCcccHHHHHHHHhcc---cccCCCcceeeccCCCchHHHHHHHc---------CCCEEEEEecHH-HHHHHH
Q psy8709         174 VFAIEKSGTPIRTESYKSAILNN---KSLFNNKHVIDVGAGTGILSIFAAQA---------GAAKVFAIEKSD-IAYETI  240 (319)
Q Consensus       174 V~avd~d~~~~~~~~~~~~i~~~---l~~~~~~~VLDiGcGtG~ls~~la~~---------g~~~V~gvD~s~-~i~~a~  240 (319)
                      +++++++..-  -+.+..++++.   ...+..-.++|+|+|+|.++.-+++.         ...++.-|++|+ ....-+
T Consensus        49 iTApels~lF--Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk  126 (370)
T COG1565          49 ITAPELSQLF--GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK  126 (370)
T ss_pred             eechhHHHHH--HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence            4555544211  13334444444   33444568999999999998776652         256899999999 766666


Q ss_pred             HHHHhc
Q psy8709         241 DIIRKN  246 (319)
Q Consensus       241 ~~~~~~  246 (319)
                      ++++..
T Consensus       127 ~~L~~~  132 (370)
T COG1565         127 ETLKAT  132 (370)
T ss_pred             HHHhcc
Confidence            666543

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=88.76  E-value=0.55  Score=44.73  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             CeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         150 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       150 ~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++||++||+|.+++..++.. ..|+++|.+......
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~  234 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNA  234 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHH
Confidence            469999999999999777654 699999998655443

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=88.73  E-value=0.71  Score=44.11  Aligned_cols=38  Identities=29%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCC
Q psy8709         134 ESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA  171 (319)
Q Consensus       134 ~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga  171 (319)
                      .....+|..-.++.++..++|..||||.+.|+||..++
T Consensus       177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~  214 (381)
T COG0116         177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAA  214 (381)
T ss_pred             HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhcc
Confidence            34566777778888999999999999999999998874

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=88.71  E-value=2.1  Score=42.85  Aligned_cols=101  Identities=23%  Similarity=0.207  Sum_probs=58.9

Q ss_pred             cCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC--------cccc--c--
Q psy8709         199 LFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL--------LEDV--E--  263 (319)
Q Consensus       199 ~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d--------~~~~--~--  263 (319)
                      ..++.+|+=+||| .|..+...++ .|+ .|+++|.++ .++.++    ..|- ..+.+-..+        +...  .  
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~ae----slGA-~~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVE----SMGA-EFLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH----HcCC-eEEEeccccccccccchhhhcchhHH
Confidence            3457899999999 5667777777 576 899999999 555444    3332 111110000        0000  0  


Q ss_pred             ------cC--CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         264 ------LP--VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       264 ------~~--~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                            +.  ...+|+||.....   .....+..+.+++.+.+||||+++.-.
T Consensus       236 ~~~~~~~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        236 KAEMALFAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             HHHHHHHHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCCCCEEEEEc
Confidence                  01  1469999964321   111122233488888999999988433

>KOG3924|consensus

Probab=88.70  E-value=1.6  Score=41.71  Aligned_cols=114  Identities=18%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHH-------HHhcCC-CCcEEEEEc
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDI-------IRKNKY-DSQIEVYHK  257 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~-------~~~~g~-~~~i~~i~~  257 (319)
                      +-...+.+.+...++....|+|.|.|.+..+.+. .+...=+|+++.+ ..+.+..+       .+..|. ...+..+++
T Consensus       179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g  258 (419)
T KOG3924|consen  179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG  258 (419)
T ss_pred             HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence            3344556667888889999999999999888777 4666778888766 44343322       222233 356788888


Q ss_pred             Ccccccc---CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         258 LLEDVEL---PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       258 d~~~~~~---~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      ++.+...   -....++|++|.+-    +.+.+..=+.++..-+++|-+++
T Consensus       259 sf~~~~~v~eI~~eatvi~vNN~~----Fdp~L~lr~~eil~~ck~gtrIi  305 (419)
T KOG3924|consen  259 SFLDPKRVTEIQTEATVIFVNNVA----FDPELKLRSKEILQKCKDGTRII  305 (419)
T ss_pred             ccCCHHHHHHHhhcceEEEEeccc----CCHHHHHhhHHHHhhCCCcceEe
Confidence            8866431   12567899987652    22333333446667778887766

>KOG2915|consensus

Probab=88.62  E-value=2  Score=39.25  Aligned_cols=48  Identities=25%  Similarity=0.327  Sum_probs=37.9

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~  186 (319)
                      .|..-..+.||.+|+..|+|||.++-+.++. + ..+++..|++..+...
T Consensus        96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~k  145 (314)
T KOG2915|consen   96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEK  145 (314)
T ss_pred             HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHH
Confidence            4555667889999999999999998887744 3 7899999997654433

>PRK00811 spermidine synthase; Provisional

Probab=88.61  E-value=0.53  Score=43.38  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=32.6

Q ss_pred             CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      ++++||++|||+|.++..+.+. +..+|.++|+++.....
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~  115 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEV  115 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHH
Confidence            4689999999999999988876 67899999999754443

>KOG2912|consensus

Probab=88.57  E-value=1.4  Score=41.12  Aligned_cols=75  Identities=17%  Similarity=0.092  Sum_probs=52.8

Q ss_pred             eeeccCCCchHHHHH-HHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-------cCCCceeEEEec
Q psy8709         205 VIDVGAGTGILSIFA-AQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-------LPVESVDIIISE  275 (319)
Q Consensus       205 VLDiGcGtG~ls~~l-a~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-------~~~~~fD~Iis~  275 (319)
                      =+|||.|.-.+--.+ ++...-...++|+.+ ....|..++.++++.+.+.+++.......       .++..||.+.||
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN  185 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN  185 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence            378887765443222 222234889999999 88999999999999888888876432211       123569999999


Q ss_pred             cchh
Q psy8709         276 WMGY  279 (319)
Q Consensus       276 ~~~~  279 (319)
                      ++++
T Consensus       186 PPFf  189 (419)
T KOG2912|consen  186 PPFF  189 (419)
T ss_pred             Cchh
Confidence            9865

>KOG1541|consensus

Probab=88.49  E-value=0.49  Score=41.88  Aligned_cols=38  Identities=16%  Similarity=0.425  Sum_probs=30.9

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ...-+||+|||||+-+-....-| ....++|+++.....
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~   87 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQ   87 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHH
Confidence            57799999999999988887777 778899998654443

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=88.46  E-value=1.7  Score=37.15  Aligned_cols=109  Identities=15%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             cHHHHHHHHhcccccCCCc-ceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCC--CCcEEEEEcCcc
Q psy8709         185 RTESYKSAILNNKSLFNNK-HVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKY--DSQIEVYHKLLE  260 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~-~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~--~~~i~~i~~d~~  260 (319)
                      ++..+-+.+.+.+...++. .|+.+|||--.....+... +...++-+|..++++.-++.+...+.  ..+.+++..|+.
T Consensus        61 Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~  140 (183)
T PF04072_consen   61 RTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLR  140 (183)
T ss_dssp             HHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TT
T ss_pred             HHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEecccc
Confidence            3444445555555444444 8999999998888888774 35689999998866666666655532  123567889987


Q ss_pred             ccc---------cCCCceeEEEeccchhhhcchhhHHHHHHHH
Q psy8709         261 DVE---------LPVESVDIIISEWMGYFLLFETMIDSVIDAR  294 (319)
Q Consensus       261 ~~~---------~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~  294 (319)
                      +..         +.....-+++++.+.+++.. +....+++.+
T Consensus       141 ~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~-~~~~~ll~~i  182 (183)
T PF04072_consen  141 DDSWIDALPKAGFDPDRPTLFIAEGVLMYLSP-EQVDALLRAI  182 (183)
T ss_dssp             SHHHHHHHHHCTT-TTSEEEEEEESSGGGS-H-HHHHHHHHHH
T ss_pred             chhhHHHHHHhCCCCCCCeEEEEcchhhcCCH-HHHHHHHHHh
Confidence            542         22356678888888777644 5556666544

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PRK11677 hypothetical protein; Provisional

Probab=88.37  E-value=1.2  Score=36.24  Aligned_cols=55  Identities=9%  Similarity=0.206  Sum_probs=43.2

Q ss_pred             HhhHHHHhhhhhhhhcccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8709          41 QAVTSVIVRSVILVLSVTIMSPPACSDLEEKNAEIDMRNEDIAQMRHLMQDMLNKK   96 (319)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (319)
                      -|++++|+-.+|-.+...+ .+|...+-.+++++|++.++++++||+++.+-..++
T Consensus         5 ~a~i~livG~iiG~~~~R~-~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~T   59 (134)
T PRK11677          5 YALIGLVVGIIIGAVAMRF-GNRKLRQQQALQYELEKNKAELEEYRQELVSHFARS   59 (134)
T ss_pred             HHHHHHHHHHHHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888887777777776 445557789999999999999999999987755443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=88.20  E-value=1.2  Score=41.56  Aligned_cols=108  Identities=17%  Similarity=0.168  Sum_probs=72.6

Q ss_pred             cceeeccCC-CchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709         203 KHVIDVGAG-TGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF  280 (319)
Q Consensus       203 ~~VLDiGcG-tG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~  280 (319)
                      .+|.-+|.| -|..+..++--...+|+-+|.|. -+.+.....     ..+++..-....++.....+.|++|..-.   
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v~~aDlvIgaVL---  240 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAVKKADLVIGAVL---  240 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHhhhccEEEEEEE---
Confidence            467778877 46666666654345999999998 444433222     24678877777777655578999996543   


Q ss_pred             hcchhhHHHHHHHHhcccCCCcEEE-----------eecCcceeecccc
Q psy8709         281 LLFETMIDSVIDARNRFLKPDGVVC-----------PNRFTLSLCGAYA  318 (319)
Q Consensus       281 l~~~~~~~~~l~~~~r~LkpgG~li-----------~~~~t~~~~~~~~  318 (319)
                      +.....+.-+.+++.+.+|||++++           -++.|.+-.|.|.
T Consensus       241 IpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~  289 (371)
T COG0686         241 IPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYE  289 (371)
T ss_pred             ecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCcee
Confidence            2444566677888899999999887           3355555566553

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=88.13  E-value=0.82  Score=44.65  Aligned_cols=42  Identities=19%  Similarity=0.247  Sum_probs=34.3

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~  186 (319)
                      ...++.+|||+|||+|..+..++. .+..+++++|++..+...
T Consensus       235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~  277 (426)
T TIGR00563       235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKR  277 (426)
T ss_pred             CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            456889999999999999998885 456799999998765443

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=88.03  E-value=0.72  Score=41.99  Aligned_cols=41  Identities=17%  Similarity=0.108  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~  185 (319)
                      ...++.+|||+|||+|..++.++. .+ ...|+++|++..+..
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~  110 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTK  110 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence            456889999999999999988774 43 568999999876544

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=87.91  E-value=0.52  Score=42.16  Aligned_cols=39  Identities=21%  Similarity=0.331  Sum_probs=30.2

Q ss_pred             CCCCCCeEEEecCCCChhhHHHH--hcCCceEEeeecCCCc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAA--QAGAAKVFAIEKSGTP  183 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa--~~ga~~V~avd~d~~~  183 (319)
                      ...++++||++|||+|.-++..+  ..++.+++++|+++..
T Consensus        65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~  105 (234)
T PLN02781         65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEA  105 (234)
T ss_pred             HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHH
Confidence            34578899999999998666554  3457899999998643

>TIGR00417 speE spermidine synthase

Probab=87.68  E-value=2.5  Score=38.49  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=30.2

Q ss_pred             CCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcc
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPI  184 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~  184 (319)
                      .+++||++|||+|.+...+.+.+ ..++..+|+++...
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi  109 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI  109 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH
Confidence            45699999999999988877665 78899999986543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=87.67  E-value=0.67  Score=44.27  Aligned_cols=36  Identities=19%  Similarity=0.329  Sum_probs=29.6

Q ss_pred             CeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         150 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       150 ~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++||++||+|.+++.+++. +.+|+++|.+......
T Consensus       208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~  243 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAA  243 (362)
T ss_pred             CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHH
Confidence            56999999999999977754 5799999998765544

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=87.54  E-value=1.8  Score=41.04  Aligned_cols=96  Identities=20%  Similarity=0.221  Sum_probs=55.0

Q ss_pred             cccccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc----c-ccCC
Q psy8709         195 NNKSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED----V-ELPV  266 (319)
Q Consensus       195 ~~l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~----~-~~~~  266 (319)
                      ......++.+||=.|+| .|.++..+++ .|..+|+++|.++ -.+.++    ..|..   .++...-.+    + ....
T Consensus       185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~---~~i~~~~~~~~~~i~~~~~  257 (371)
T cd08281         185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR----ELGAT---ATVNAGDPNAVEQVRELTG  257 (371)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HcCCc---eEeCCCchhHHHHHHHHhC
Confidence            33456677888888875 4555566666 4666799999988 544443    34431   122211111    1 1112


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +.+|+|+-.. +.        ...+....+.|+++|.++.
T Consensus       258 ~g~d~vid~~-G~--------~~~~~~~~~~l~~~G~iv~  288 (371)
T cd08281         258 GGVDYAFEMA-GS--------VPALETAYEITRRGGTTVT  288 (371)
T ss_pred             CCCCEEEECC-CC--------hHHHHHHHHHHhcCCEEEE
Confidence            3689998432 11        1234555678999999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=87.47  E-value=3.1  Score=38.36  Aligned_cols=93  Identities=18%  Similarity=0.210  Sum_probs=55.8

Q ss_pred             cccCCCcceeeccCC-CchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----ccCCCc
Q psy8709         197 KSLFNNKHVIDVGAG-TGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----ELPVES  268 (319)
Q Consensus       197 l~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~~~~~~  268 (319)
                      ....++.+||..|+| .|..+..+++. |. +|++++.++ ..+.++    ..+. +.  ++...-...     ..+...
T Consensus       161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~----~~g~-~~--~~~~~~~~~~~~~~~~~~~~  232 (338)
T cd08254         161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAK----ELGA-DE--VLNSLDDSPKDKKAAGLGGG  232 (338)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH----HhCC-CE--EEcCCCcCHHHHHHHhcCCC
Confidence            345667788888776 46677777774 54 799999988 554443    3343 11  111111111     123457


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +|+++....     .    ...+.++.+.|+++|.++.
T Consensus       233 ~D~vid~~g-----~----~~~~~~~~~~l~~~G~~v~  261 (338)
T cd08254         233 FDVIFDFVG-----T----QPTFEDAQKAVKPGGRIVV  261 (338)
T ss_pred             ceEEEECCC-----C----HHHHHHHHHHhhcCCEEEE
Confidence            999985321     1    2356677789999999984

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08230 glucose_DH Glucose dehydrogenase

Probab=87.37  E-value=2.3  Score=40.07  Aligned_cols=93  Identities=23%  Similarity=0.365  Sum_probs=52.3

Q ss_pred             cCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEec---HHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEE
Q psy8709         199 LFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEK---SDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIII  273 (319)
Q Consensus       199 ~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~---s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Ii  273 (319)
                      ..++.+||-+|+| .|.++..+++ .|. +|++++.   ++   .-.+.++..|. +.+.....+..+.. ....+|+|+
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~---~~~~~~~~~Ga-~~v~~~~~~~~~~~-~~~~~d~vi  243 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPD---PKADIVEELGA-TYVNSSKTPVAEVK-LVGEFDLII  243 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCH---HHHHHHHHcCC-EEecCCccchhhhh-hcCCCCEEE
Confidence            4567889989886 4566666777 465 8999986   45   22233344443 11111111111111 124689988


Q ss_pred             eccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      -..-     .    ...+....+.|++||.++.
T Consensus       244 d~~g-----~----~~~~~~~~~~l~~~G~~v~  267 (355)
T cd08230         244 EATG-----V----PPLAFEALPALAPNGVVIL  267 (355)
T ss_pred             ECcC-----C----HHHHHHHHHHccCCcEEEE
Confidence            5321     1    1245666788999999874

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=87.36  E-value=2.4  Score=39.92  Aligned_cols=94  Identities=20%  Similarity=0.169  Sum_probs=54.2

Q ss_pred             cccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----c-cCCC
Q psy8709         197 KSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----E-LPVE  267 (319)
Q Consensus       197 l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~-~~~~  267 (319)
                      ....++.+||-.|+| .|..+..+++ .|..+|+++|.++ ..+.+    +..|. +  .++...-.+.     . ....
T Consensus       172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~----~~~Ga-~--~~i~~~~~~~~~~i~~~~~~~  244 (358)
T TIGR03451       172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA----REFGA-T--HTVNSSGTDPVEAIRALTGGF  244 (358)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCC-c--eEEcCCCcCHHHHHHHHhCCC
Confidence            455678899988875 3455566666 4665799999988 54444    33443 1  1222111111     1 1223


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      .+|+|+-. .+    .    ...+....+.|++||+++.
T Consensus       245 g~d~vid~-~g----~----~~~~~~~~~~~~~~G~iv~  274 (358)
T TIGR03451       245 GADVVIDA-VG----R----PETYKQAFYARDLAGTVVL  274 (358)
T ss_pred             CCCEEEEC-CC----C----HHHHHHHHHHhccCCEEEE
Confidence            58999842 21    1    1234455678999999884

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG0821|consensus

Probab=87.23  E-value=1.1  Score=39.73  Aligned_cols=73  Identities=15%  Similarity=0.221  Sum_probs=54.7

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ++.+.+..........-|.+||.|.|..+..+.+++..+...++.++ .+.-.+-......  .+..+.++|+..+
T Consensus        37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRF  110 (326)
T ss_pred             HHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEecccccee
Confidence            45566666666666688999999999999999999988999999998 6665544433322  4677778887554

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=87.19  E-value=2.4  Score=39.31  Aligned_cols=90  Identities=26%  Similarity=0.333  Sum_probs=52.0

Q ss_pred             CCcceeeccCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC---ccccccCCCceeEEEe
Q psy8709         201 NNKHVIDVGAGT-GILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL---LEDVELPVESVDIIIS  274 (319)
Q Consensus       201 ~~~~VLDiGcGt-G~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d---~~~~~~~~~~fD~Iis  274 (319)
                      ++.+||-.|||. |..+..+++ .|..++++++.++ ..+.+    +..+. +  .++..+   ..........+|+++.
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~----~~~g~-~--~vi~~~~~~~~~~~~~~~~vd~vld  237 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVA----RAMGA-D--ETVNLARDPLAAYAADKGDFDVVFE  237 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH----HHcCC-C--EEEcCCchhhhhhhccCCCccEEEE
Confidence            678888888764 555566666 4655899999887 54433    22333 1  122211   1111112245999985


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ....         ...+....+.|+++|.++.
T Consensus       238 ~~g~---------~~~~~~~~~~L~~~G~~v~  260 (339)
T cd08232         238 ASGA---------PAALASALRVVRPGGTVVQ  260 (339)
T ss_pred             CCCC---------HHHHHHHHHHHhcCCEEEE
Confidence            3211         1235666788999999883

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>KOG0820|consensus

Probab=87.04  E-value=1.2  Score=40.56  Aligned_cols=50  Identities=30%  Similarity=0.397  Sum_probs=39.8

Q ss_pred             HHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         134 ESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       134 ~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      ....+.|+....+.+++.||.+|-|||.++.-.-..| ++|.|+++|+...
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmv   93 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMV   93 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHH
Confidence            4445666777889999999999999999998766554 6899999997543

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=86.94  E-value=1.4  Score=41.42  Aligned_cols=74  Identities=24%  Similarity=0.208  Sum_probs=54.2

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCC--C-ceeEEEeccchh
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPV--E-SVDIIISEWMGY  279 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~--~-~fD~Iis~~~~~  279 (319)
                      .+++|+-||.|.+..-+...|+.-+.++|+++   .|.+..+.|..  ...++..|+.......  . .+|+++..+++.
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~---~a~~ty~~n~~--~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ   78 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP---PAVATYKANFP--HGDIILGDIKELDGEALRKSDVDVLIGGPPCQ   78 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCH---HHHHHHHHhCC--CCceeechHhhcChhhccccCCCEEEeCCCCc
Confidence            58999999999999999999988999999999   44444444422  2456667776553221  2 799999888765


Q ss_pred             hh
Q psy8709         280 FL  281 (319)
Q Consensus       280 ~l  281 (319)
                      .+
T Consensus        79 ~F   80 (328)
T COG0270          79 DF   80 (328)
T ss_pred             ch
Confidence            43

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=86.89  E-value=0.97  Score=44.40  Aligned_cols=43  Identities=19%  Similarity=0.220  Sum_probs=34.4

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~  186 (319)
                      ....++++|||+|||+|..+..++.. + ...|+++|++..+...
T Consensus       246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~  290 (445)
T PRK14904        246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEK  290 (445)
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence            34568899999999999999877743 3 5699999999866554

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=86.84  E-value=1.4  Score=39.00  Aligned_cols=92  Identities=25%  Similarity=0.290  Sum_probs=53.8

Q ss_pred             cCCCcceeeccCCC-chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----ccCCCceeE
Q psy8709         199 LFNNKHVIDVGAGT-GILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----ELPVESVDI  271 (319)
Q Consensus       199 ~~~~~~VLDiGcGt-G~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~~~~~~fD~  271 (319)
                      ..++.+||..|+|. |.....+++....+|++++.++ ..+.++    ..+. .  .++...-...     ....+.+|+
T Consensus       132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~----~~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~  204 (271)
T cd05188         132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK----ELGA-D--HVIDYKEEDLEEELRLTGGGGADV  204 (271)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH----HhCC-c--eeccCCcCCHHHHHHHhcCCCCCE
Confidence            36778999999985 6566666664335999999988 544443    2232 1  1111111111     112357999


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ++......         ..+....+.|+++|.++.
T Consensus       205 vi~~~~~~---------~~~~~~~~~l~~~G~~v~  230 (271)
T cd05188         205 VIDAVGGP---------ETLAQALRLLRPGGRIVV  230 (271)
T ss_pred             EEECCCCH---------HHHHHHHHhcccCCEEEE
Confidence            98643210         234556678899999884

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=86.34  E-value=0.95  Score=43.60  Aligned_cols=38  Identities=24%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             CCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709         149 NKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       149 ~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~  186 (319)
                      +.++||++||+|.+++.++. .++..|+++|+++.....
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~   96 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVEL   96 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            56899999999999999874 567899999998765543

>PRK08324 short chain dehydrogenase; Validated

Probab=86.31  E-value=28  Score=36.11  Aligned_cols=73  Identities=19%  Similarity=0.142  Sum_probs=45.2

Q ss_pred             CCCcceeeccCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----c-----C
Q psy8709         200 FNNKHVIDVGAGTG---ILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----L-----P  265 (319)
Q Consensus       200 ~~~~~VLDiGcGtG---~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----~-----~  265 (319)
                      .+++++|-.|++.|   .+...+++.|. +|+.+|.++ .++.+.+.+...   .++.++..|+.+..     +     .
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~  495 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA  495 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            35678888886444   22333444566 899999988 555544433322   46788888876542     1     1


Q ss_pred             CCceeEEEecc
Q psy8709         266 VESVDIIISEW  276 (319)
Q Consensus       266 ~~~fD~Iis~~  276 (319)
                      .+.+|+||.+.
T Consensus       496 ~g~iDvvI~~A  506 (681)
T PRK08324        496 FGGVDIVVSNA  506 (681)
T ss_pred             cCCCCEEEECC
Confidence            24689998764

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=86.25  E-value=6.5  Score=35.78  Aligned_cols=65  Identities=25%  Similarity=0.391  Sum_probs=43.2

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc------CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA------GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~------g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      +.+...++|+|||.|.++..++..      +...++.||-...-.++-..+........++=+..|+.++.
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~   86 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD   86 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence            455678999999999999998884      24588999987611133333433332135666777877764

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG2920|consensus

Probab=85.81  E-value=0.6  Score=42.73  Aligned_cols=109  Identities=27%  Similarity=0.344  Sum_probs=62.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHH-HHHHHHH--------hcCCCCcEEEEEcCcccccc-CCC-
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAY-ETIDIIR--------KNKYDSQIEVYHKLLEDVEL-PVE-  267 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~-~a~~~~~--------~~g~~~~i~~i~~d~~~~~~-~~~-  267 (319)
                      ..+++|||+|||.|...+.+...+...+...|.+. .++ ....++.        .+....-..+......+..+ ..+ 
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~  194 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER  194 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence            34689999999999999999998877888888888 441 1111110        00000111222221111111 112 


Q ss_pred             -ceeEEEeccchhhhcchhhHHHH-HHHHhcccCCCcEEEeecCcc
Q psy8709         268 -SVDIIISEWMGYFLLFETMIDSV-IDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       268 -~fD~Iis~~~~~~l~~~~~~~~~-l~~~~r~LkpgG~li~~~~t~  311 (319)
                       .||+|.+.-..|-.   .....+ ......+++++|+++...-..
T Consensus       195 ~~ydlIlsSetiy~~---~~~~~~~~~~r~~l~~~D~~~~~aAK~~  237 (282)
T KOG2920|consen  195 THYDLILSSETIYSI---DSLAVLYLLHRPCLLKTDGVFYVAAKKL  237 (282)
T ss_pred             cchhhhhhhhhhhCc---chhhhhHhhhhhhcCCccchhhhhhHhh
Confidence             78888876554433   333333 556677889999887544333

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=85.80  E-value=1.3  Score=41.15  Aligned_cols=42  Identities=17%  Similarity=0.138  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~~~~~  186 (319)
                      ...++.+++|.+||.|..+...+...  ..+|+|+|.|+.....
T Consensus        16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~   59 (296)
T PRK00050         16 AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAA   59 (296)
T ss_pred             CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHH
Confidence            34578899999999999999988654  5899999999765544

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=85.42  E-value=1.2  Score=43.57  Aligned_cols=42  Identities=24%  Similarity=0.234  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~  186 (319)
                      ...++.+|||+|||+|..++.++.. + ...|+++|++..+...
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~  277 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQL  277 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            4568899999999999999888754 3 6799999998765443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=85.16  E-value=1.4  Score=43.19  Aligned_cols=43  Identities=16%  Similarity=0.315  Sum_probs=34.2

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~  186 (319)
                      ....++.+|||+|||+|..+..++.. + ..+|+++|++..+...
T Consensus       248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~  292 (434)
T PRK14901        248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKK  292 (434)
T ss_pred             hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHH
Confidence            34568899999999999999988754 3 5699999998655443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=84.92  E-value=0.9  Score=40.48  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=27.5

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      ....+-+++||+|||||+.+...-. -+.++.|+|++...
T Consensus       121 ~~~g~F~~~lDLGCGTGL~G~~lR~-~a~~ltGvDiS~nM  159 (287)
T COG4976         121 ADLGPFRRMLDLGCGTGLTGEALRD-MADRLTGVDISENM  159 (287)
T ss_pred             ccCCccceeeecccCcCcccHhHHH-HHhhccCCchhHHH
Confidence            3344468999999999998865442 24567788887543

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=84.77  E-value=3.9  Score=38.33  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=53.2

Q ss_pred             cCCCcceeeccCC-CchHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe
Q psy8709         199 LFNNKHVIDVGAG-TGILSIFAAQ--AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS  274 (319)
Q Consensus       199 ~~~~~~VLDiGcG-tG~ls~~la~--~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis  274 (319)
                      ..++.+||-+||| .|.++..+++  .|..+|+++|.++ -++.+++    .+.   ...+    .+.. ....+|+|+-
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~-~~~g~d~viD  228 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIP-EDLAVDHAFE  228 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhh-hccCCcEEEE
Confidence            4568899999986 4455555555  3566899999998 5555542    221   1111    1111 1124899984


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ..-+      ......+....++|++||.++.
T Consensus       229 ~~G~------~~~~~~~~~~~~~l~~~G~iv~  254 (341)
T cd08237         229 CVGG------RGSQSAINQIIDYIRPQGTIGL  254 (341)
T ss_pred             CCCC------CccHHHHHHHHHhCcCCcEEEE
Confidence            3211      1123456667789999999874

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
2fyt_A	340	Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev		1e-31
1f3l_A	321	Crystal Structure Of The Conserved Core Of Protein		1e-30
3q7e_A	349	Crystal Structure Of Rat Protein Arginine Methyltra		6e-29
1ori_A	343	Structure Of The Predominant Protein Arginine Methy		7e-29
1or8_A	340	Structure Of The Predominant Protein Arginine Methy		7e-29
1orh_A	353	Structure Of The Predominant Protein Arginine Methy		1e-28
1g6q_1	328	Crystal Structure Of Yeast Arginine Methyltransfera		3e-28
3r0q_C	376	A Uniquely Open Conformation Revealed In The Crysta		1e-25
4hc4_A	376	Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (		6e-24
3b3j_A	480	The 2.55 A Crystal Structure Of The Apo Catalytic D		8e-18
2y1w_A	348	Crystal Structure Of Coactivator Associated Arginin		1e-17
4ikp_A	341	Crystal Structure Of Coactivator-associated Arginin		1e-17
2v74_B	346	Crystal Structure Of Coactivator-Associated Arginin		1e-17
3b3f_A	341	The 2.2 A Crystal Structure Of The Catalytic Domain		1e-17

>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 89/130 (68%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           IRTESY+  I  N  +F +K V+DVG GTGILS+F           +++S+I Y+ +DII
Sbjct: 47  IRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDII 106
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           R NK +  I +    +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A+N++L   G 
Sbjct: 107 RLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGS 166
Query: 304 VCPNRFTLSL 313
           V P+  T+SL
Sbjct: 167 VYPDICTISL 176

>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/130 (48%), Positives = 89/130 (68%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +RTESY+  I  N  +F +K V+DVG GTGILS+F           +++S+I Y+ +DII
Sbjct: 28  VRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEILYQAMDII 87
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           R NK +  I +    +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A++++L   G 
Sbjct: 88  RLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFESMLDSVLYAKSKYLAKGGS 147
Query: 304 VCPNRFTLSL 313
           V P+  T+SL
Sbjct: 148 VYPDICTISL 157

>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 89/128 (69%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +RT +Y++++ +N+ LF +K V+DVG+GTGIL +F           IE S I+   + I+
Sbjct: 49  VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 108
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + NK D  + +    +E+VELPVE VDIIISEWMGY L +E+M+++V+ AR+++L PDG+
Sbjct: 109 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL 168
Query: 304 VCPNRFTL 311
           + P+R TL
Sbjct: 169 IFPDRATL 176

>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343

Iteration: 1
 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 89/128 (69%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +RT +Y++++ +N+ LF +K V+DVG+GTGIL +F           IE S I+   + I+
Sbjct: 43  VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 102
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + NK D  + +    +E+VELPVE VDIIISEWMGY L +E+M+++V+ AR+++L PDG+
Sbjct: 103 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL 162
Query: 304 VCPNRFTL 311
           + P+R TL
Sbjct: 163 IFPDRATL 170

>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340

Iteration: 1
 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 89/128 (69%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +RT +Y++++ +N+ LF +K V+DVG+GTGIL +F           IE S I+   + I+
Sbjct: 40  VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 99
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + NK D  + +    +E+VELPVE VDIIISEWMGY L +E+M+++V+ AR+++L PDG+
Sbjct: 100 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL 159
Query: 304 VCPNRFTL 311
           + P+R TL
Sbjct: 160 IFPDRATL 167

>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 89/128 (69%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +RT +Y++++ +N+ LF +K V+DVG+GTGIL +F           IE S I+   + I+
Sbjct: 53  VRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIV 112
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + NK D  + +    +E+VELPVE VDIIISEWMGY L +++M+++V+ AR+++L PDG+
Sbjct: 113 KANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYQSMLNTVLHARDKWLAPDGL 172
Query: 304 VCPNRFTL 311
           + P+R TL
Sbjct: 173 IFPDRATL 180

>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 53/204 (25%)
Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFXXXXXX 171
           YYF+SY+   IH EM++DTVRT SY++AI+ N  LF +K V+DVG GTGILS+F      
Sbjct: 2   YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAA---- 57
Query: 172 XXXXXIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIE 231
                  K G                     KHVI V   + I                 
Sbjct: 58  -------KHGA--------------------KHVIGVDMSSII----------------- 73
Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
             ++A E +++   N +  +I +    LEDV LP   VDIIISEWMGYFLL+E+M+D+V+
Sbjct: 74  --EMAKELVEL---NGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVL 128
Query: 292 DARNRFLKPDGVVCPNRFTLSLCG 315
            AR+ +L   G++ P++ ++ L G
Sbjct: 129 YARDHYLVEGGLIFPDKCSIHLAG 152

>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +R ++Y +A+  NK  F  K V+DVG G+GIL+I+           +E + +A     ++
Sbjct: 46  VRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALV 105
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + N  D  +EV    +ED+ LP E VD+IISEWMGYFLL E+M DSVI AR+R+LKP GV
Sbjct: 106 KANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGV 164
Query: 304 VCPNRFTLSLC 314
           + P+   + L 
Sbjct: 165 MYPSHARMWLA 175

>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376

Iteration: 1
 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +RT++Y+  IL N +    K V+DVGAGTGILSIF           +E S I  +  +++
Sbjct: 66  VRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVV 125
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           R N  + ++ V    +E VELP E VD I+SEWMGY LL E+M+ SV+ AR ++LK  G+
Sbjct: 126 RFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGL 184
Query: 304 VCP 306
           + P
Sbjct: 185 LLP 187

>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480

Iteration: 1
 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +RT +Y+ AIL N + F +K V+DVG G+GILS F           +E S +A     ++
Sbjct: 141 VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 200
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + N    +I V    +E+V LP E VDIIISE MGY L  E M++S + A+ ++LKP G 
Sbjct: 201 KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGN 258
Query: 304 VCPN 307
           + P 
Sbjct: 259 MFPT 262

>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +RT +Y+ AIL N + F +K V+DVG G+GILS F           +E S +A     ++
Sbjct: 33  VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 92
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + N    +I V    +E+V LP E VDIIISE MGY L  E M++S + A+ ++LKP G 
Sbjct: 93  KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGN 150
Query: 304 VCPN 307
           + P 
Sbjct: 151 MFPT 154

>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +RT +Y+ AIL N + F +K V+DVG G+GILS F           +E S +A     ++
Sbjct: 28  VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 87
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + N    +I V    +E+V LP E VDIIISE MGY L  E M++S + A+ ++LKP G 
Sbjct: 88  KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGN 145
Query: 304 VCPN 307
           + P 
Sbjct: 146 MFPT 149

>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +RT +Y+ AIL N + F +K V+DVG G+GILS F           +E S +A     ++
Sbjct: 24  VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 83
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + N    +I V    +E+V LP E VDIIISE MGY L  E M++S + A+ ++LKP G 
Sbjct: 84  KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGN 141
Query: 304 VCPN 307
           + P 
Sbjct: 142 MFPT 145

>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFXXXXXXXXXXXIEKSDIAYETIDII 243
           +RT +Y+ AIL N + F +K V+DVG G+GILS F           +E S +A     ++
Sbjct: 29  VRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLV 88
Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
           + N    +I V    +E+V LP E VDIIISE MGY L  E M++S + A+ ++LKP G 
Sbjct: 89  KSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGN 146
Query: 304 VCPN 307
           + P 
Sbjct: 147 MFPT 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	3e-53
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	5e-52
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	4e-49
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	6e-47
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	2e-46
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	3e-44
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	2e-31
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	1e-17
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	9e-16
3f4k_A	257	Putative methyltransferase; structural genomics, P	5e-13
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	2e-12
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	2e-11
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	4e-11
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	1e-10
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-10
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-04
2p7i_A	250	Hypothetical protein; putative methyltransferase,	3e-10
2p7i_A	250	Hypothetical protein; putative methyltransferase,	3e-04
3cc8_A	230	Putative methyltransferase; structural genomics, j	1e-09
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	4e-09
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	4e-05
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	4e-09
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	9e-07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-08
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	3e-08
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	4e-08
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	1e-07
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	2e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	2e-07
3lpm_A	259	Putative methyltransferase; structural genomics, p	2e-07
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	2e-07
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	2e-07
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	3e-05
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	3e-07
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	2e-05
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	3e-07
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	4e-07
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	5e-07
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	6e-07
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	8e-07
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	8e-07
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	9e-07
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	1e-06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-06
2esr_A	177	Methyltransferase; structural genomics, hypothetic	1e-06
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	1e-06
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-06
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	2e-06
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	5e-06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	2e-06
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	3e-06
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	8e-05
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	3e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	6e-06
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	7e-06
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	9e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	1e-05
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	1e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	1e-05
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	2e-05
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	2e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	2e-05
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	3e-05
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	4e-04
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	4e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	4e-05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	5e-05
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	5e-05
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	6e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	6e-05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	7e-05
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	1e-04
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	1e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	1e-04
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-04
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	3e-04
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	3e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	4e-04
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	4e-04
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	4e-04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	5e-04
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	6e-04
2frn_A	278	Hypothetical protein PH0793; structural genomics,	6e-04
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	6e-04
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	6e-04
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	7e-04
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	7e-04

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340

 Score =  177 bits (449), Expect = 3e-53
 Identities = 83/220 (37%), Positives = 112/220 (50%), Gaps = 53/220 (24%)

Query: 97  EEDEEGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVG 156
                G +     D  YF+SY    IH EM+KD +RTESY+  I  N             
Sbjct: 13  GLVPRGSDLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQN------------- 59

Query: 157 AGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILS 216
                                                     +F +K V+DVG GTGILS
Sbjct: 60  ----------------------------------------PHIFKDKVVLDVGCGTGILS 79

Query: 217 IFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW 276
           +FAA+AGA KV  +++S+I Y+ +DIIR NK +  I +    +E+V LPVE VD+IISEW
Sbjct: 80  MFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 139

Query: 277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGA 316
           MGYFLLFE+M+DSV+ A+N++L   G V P+  T+SL   
Sbjct: 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAV 179

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349

 Score =  174 bits (441), Expect = 5e-52
 Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 54/231 (23%)

Query: 87  HLMQDMLNKKEEDEEGENKTRRHDK-YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNS 145
           H    M   + E  E  N      K YYF+SY    IH E++KD VRT +Y++++ +N  
Sbjct: 4   HDHHHMSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHN-- 61

Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHV 205
                                                              + LF +K V
Sbjct: 62  ---------------------------------------------------RHLFKDKVV 70

Query: 206 IDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELP 265
           +DVG+GTGIL +FAA+AGA KV  IE S I+   + I++ NK D  + +    +E+VELP
Sbjct: 71  LDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP 130

Query: 266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGA 316
           VE VDIIISEWMGY L +E+M+++V+ AR+++L PDG++ P+R TL +   
Sbjct: 131 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAI 181

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328

 Score =  165 bits (419), Expect = 4e-49
 Identities = 74/204 (36%), Positives = 106/204 (51%), Gaps = 53/204 (25%)

Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA 171
           YYF+SY+   IH EM++DTVRT SY++AI+ N                            
Sbjct: 2   YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQN---------------------------- 33

Query: 172 AKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
                                    K LF +K V+DVG GTGILS+FAA+ GA  V  ++
Sbjct: 34  -------------------------KDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVD 68

Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
            S I     +++  N +  +I +    LEDV LP   VDIIISEWMGYFLL+E+M+D+V+
Sbjct: 69  MSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVL 128

Query: 292 DARNRFLKPDGVVCPNRFTLSLCG 315
            AR+ +L   G++ P++ ++ L G
Sbjct: 129 YARDHYLVEGGLIFPDKCSIHLAG 152

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score =  160 bits (407), Expect = 6e-47
 Identities = 65/206 (31%), Positives = 91/206 (44%), Gaps = 55/206 (26%)

Query: 110 DKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA 169
              YF  Y        M++D VRT +Y+ AIL N                          
Sbjct: 12  AVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQN-------------------------- 45

Query: 170 GAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFA 229
                                       + F +K V+DVG G+GILS FAAQAGA K++A
Sbjct: 46  ---------------------------HTDFKDKIVLDVGCGSGILSFFAAQAGARKIYA 78

Query: 230 IEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDS 289
           +E S +A     +++ N    +I V    +E+V LP E VDIIISE MGY L  E M++S
Sbjct: 79  VEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLES 137

Query: 290 VIDARNRFLKPDGVVCPNRFTLSLCG 315
            + A+ ++LKP G + P    + L  
Sbjct: 138 YLHAK-KYLKPSGNMFPTIGDVHLAP 162

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score =  162 bits (411), Expect = 2e-46
 Identities = 68/237 (28%), Positives = 99/237 (41%), Gaps = 56/237 (23%)

Query: 80  EDIAQMRHLMQDMLNKKEEDEEGENKTRRHDK-YYFNSYEDAHIHAEMIKDTVRTESYKS 138
            D     ++++       E      +T       YF  Y        M++D VRT +Y+ 
Sbjct: 89  HDFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQR 148

Query: 139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKS 198
           AIL N                                                      +
Sbjct: 149 AILQN-----------------------------------------------------HT 155

Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKL 258
            F +K V+DVG G+GILS FAAQAGA K++A+E S +A     +++ N    +I V    
Sbjct: 156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGK 215

Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCG 315
           +E+V LP E VDIIISE MGY L  E M++S + A+ ++LKP G + P    + L  
Sbjct: 216 VEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 270

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376

 Score =  154 bits (390), Expect = 3e-44
 Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 54/206 (26%)

Query: 110 DKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA 169
              YF +Y   +   +M+ D VR ++Y +A+  N                          
Sbjct: 25  YAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQN-------------------------- 58

Query: 170 GAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFA 229
                                      K  F  K V+DVG G+GIL+I++AQAGA KV+A
Sbjct: 59  ---------------------------KHHFEGKTVLDVGTGSGILAIWSAQAGARKVYA 91

Query: 230 IEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDS 289
           +E + +A     +++ N  D  +EV    +ED+ LP E VD+IISEWMGYFLL E+M DS
Sbjct: 92  VEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESMFDS 150

Query: 290 VIDARNRFLKPDGVVCPNRFTLSLCG 315
           VI AR+R+LKP GV+ P+   + L  
Sbjct: 151 VISARDRWLKPTGVMYPSHARMWLAP 176

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745

 Score =  123 bits (308), Expect = 2e-31
 Identities = 35/279 (12%), Positives = 84/279 (30%), Gaps = 65/279 (23%)

Query: 65  CSDLEEKNAEIDMRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRHDKYYFNSYED----- 119
            +  +       +++E    +RH ++  +N +   + GE             Y+D     
Sbjct: 308 RATTDTFKYNTSIKSEYSQALRHAVR-NVNYRSRPDVGEGSNDSTHYLNVIEYKDVLQAP 366

Query: 120 ---------AHIHAEMIKDTVRTESYKSAILN-----NNSLFNNKHVIDVGAGTGILSIF 165
                    + ++    +D ++ + Y  A++               +  +G G G +   
Sbjct: 367 LQPLSENLDSGVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTK 426

Query: 166 AAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAA 225
             ++                                                   ++   
Sbjct: 427 ILKSEREYNNTFR---------------------------------------QGQESLKV 447

Query: 226 KVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPV-----ESVDIIISEWMGYF 280
           K++ +EK+  A  T+  +    +  ++ +    +  +         E  DII+SE +G F
Sbjct: 448 KLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSF 507

Query: 281 LLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYAE 319
              E +    +D    FLKP  +  P ++T  +    + 
Sbjct: 508 GDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPIMST 545

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 80.3 bits (198), Expect = 1e-17
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYET-IDIIRKNKYDS 250
           A+    +L     + D+G GTG  ++  A     +V  ++      +      R++   +
Sbjct: 37  ALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN 96

Query: 251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP 306
           ++      ++D+    E +D+I SE   Y + FE      ++   ++LK  G +  
Sbjct: 97  RVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFE----RGLNEWRKYLKKGGYLAV 148

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 74.6 bits (183), Expect = 9e-16
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 176 AIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDI 235
            + +S   ++       +      FN K V+D+G G G   I+AA+ GA KV  I   D+
Sbjct: 19  QMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGI---DL 75

Query: 236 AYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARN 295
           +   +   ++      +    K +ED+ +  ++ ++++S      L +    D +     
Sbjct: 76  SERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA---LHYIASFDDICKKVY 132

Query: 296 RFLKPDGVV 304
             LK  G  
Sbjct: 133 INLKSSGSF 141

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 66.8 bits (163), Expect = 5e-13
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYET-IDIIRK 245
           E+ + A+     L ++  + D+G GTG  ++F A     ++  I+      E   +   K
Sbjct: 32  EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVK 91

Query: 246 NKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
                +++     ++++    E +D+I SE   Y + FE  ++      +++LK  G +
Sbjct: 92  ANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEW----SKYLKKGGFI 146

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKL 258
               ++DVG+    L I   + G      A E  +  Y+  +  +  +    +I+V    
Sbjct: 15  QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLAN 74

Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG--VVCPN 307
                   + V +I    MG  L     I  +++     L      ++ PN
Sbjct: 75  GLAAFEETDQVSVITIAGMGGRL-----IARILEEGLGKLANVERLILQPN 120

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 202 NKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKLL 259
           N+ + D+G+    L  FA +   A+   A E  D  ++     +R +    QI+V     
Sbjct: 22  NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNG 81

Query: 260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG--VVCPN 307
             V    +++D I+   MG  L     I ++++     L      ++ PN
Sbjct: 82  LAVIEKKDAIDTIVIAGMGGTL-----IRTILEEGAAKLAGVTKLILQPN 126

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 61.1 bits (148), Expect = 4e-11
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKL 258
               ++DVG+    L IF  Q G      A E  +  Y+  +  + ++   S+I+V    
Sbjct: 21  KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLAN 80

Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG--VVCPN 307
                   +++D I    MG  L     I  +++     L+     V+ PN
Sbjct: 81  GLSAFEEADNIDTITICGMGGRL-----IADILNNDIDKLQHVKTLVLQPN 126

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
              ++D+G G G    +A + GA+ V  +   D++ + +   R    D+ I      L+ 
Sbjct: 44  GLRIVDLGCGFGWFCRWAHEHGASYVLGL---DLSEKMLARARAAGPDTGITYERADLDK 100

Query: 262 VELPVESVDIIISEWMGYFLL-FETMIDSVIDARNRFLKPDGVVC 305
           + LP +S D+  S    +++     +  +V    ++ L P G   
Sbjct: 101 LHLPQDSFDLAYSSLALHYVEDVARLFRTV----HQALSPGGHFV 141

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 16/116 (13%)

Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDS 250
              L N        ++D G G G    +  +    K++ I   DI    +  +++     
Sbjct: 7   EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCI---DINVIALKEVKEK---- 58

Query: 251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVV 304
             +    L +  E+P  SVD I+         F  M D   VI    R LK DG V
Sbjct: 59  -FDSVITLSDPKEIPDNSVDFILF-----ANSFHDMDDKQHVISEVKRILKDDGRV 108

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
              L N        ++D G G G    +  +    K++ I+ +
Sbjct: 7   EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDIN 48

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 23/125 (18%)

Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYH 256
              F   +++++G+  G  +    +     +  +E S+ A        + +    I   H
Sbjct: 38  TPFFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHA----QGRLKDGITYIH 92

Query: 257 KLLEDVELPVESVDIIISEWMGYFLLFETM------IDSVIDARNRFLKPDGVV---CPN 307
              ED +LP    D I+        L   +      +  +    + +L   G +   CPN
Sbjct: 93  SRFEDAQLP-RRYDNIV--------LTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 143

Query: 308 RFTLS 312
              +S
Sbjct: 144 ANAVS 148

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 8/74 (10%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 107 RRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFA 166
           R +D+   ++    + +     D +     ++        F   +++++G+  G  +   
Sbjct: 6   RNYDQEIKDTAGHKYAY-NFDFDVMHPFMVRAFT----PFFRPGNLLELGSFKGDFTSRL 60

Query: 167 AQAGAAKVFAIEKS 180
            +     +  +E S
Sbjct: 61  QEHF-NDITCVEAS 73

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 16/122 (13%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
             K V+D+G  +G L     + G  +V  IE    A    +  ++      + +      
Sbjct: 32  EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEA---AEQAKEKLDH--VVLGDIETM 85

Query: 261 DVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVVC---PNRFTLSLCG 315
           D+    E  D +I        + E + D  +VI+    ++K +GV+    PN   +S+  
Sbjct: 86  DMPYEEEQFDCVIF-----GDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLA 140

Query: 316 AY 317
             
Sbjct: 141 PL 142

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI-IRKNKYDSQIEVYHK 257
              N   +DVG GTG +++  A     +V+AI+++  A  T ++ ++++     + +   
Sbjct: 31  PGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG 89

Query: 258 LLEDVELPVESVD-IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311
              +    +  +D  ++    G        +  ++      LKP G +      L
Sbjct: 90  DAPEALCKIPDIDIAVVGGSGG-------ELQEILRIIKDKLKPGGRIIVTAILL 137

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 126 MIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
                VR       I+       N   +DVG GTG +++  A     +V+AI++
Sbjct: 16  PTAMEVR-----CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDR 63

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVY 255
           +++     V DVG G+GIL+I A + GA  V A + SD +     +    N         
Sbjct: 56  RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQK 115

Query: 256 HKLLEDVELPVESVDIII 273
             LL DV+      D+I+
Sbjct: 116 TSLLADVDGK---FDLIV 130

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 47.6 bits (114), Expect = 9e-07
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
           +     V DVG G+GIL+I A + GA  V A 
Sbjct: 58  MVKPLTVADVGTGSGILAIAAHKLGAKSVLAT 89

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 9/118 (7%)

Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN-KYDSQIEVYHKLLED 261
            + +++G   G  +   A      +  I   D+    I    +  K  S I      +  
Sbjct: 53  SNGLEIGCAAGAFTEKLAPHCKR-LTVI---DVMPRAIGRACQRTKRWSHISWAATDILQ 108

Query: 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG---VVCPNRFTLSLCGA 316
                E  D+I+   + Y+L   T + + ID   + L P G          T    G 
Sbjct: 109 -FSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGH 165

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
            + V+D+G G G L    A  G  +   +   D     +D  R           +  L +
Sbjct: 53  PERVLDLGCGEGWLLRALADRG-IEAVGV---DGDRTLVDAARAAGAGEVHLASYAQLAE 108

Query: 262 VELPV-ESVDIIISEWMGYFLLFETM-IDSVIDARNRFLKPDGVV 304
            ++PV +  D+I +             I  ++ A    L P G +
Sbjct: 109 AKVPVGKDYDLICA-----NFALLHQDIIELLSAMRTLLVPGGAL 148

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 192 AILNNKSLFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIEKSDIAYETIDIIRK----- 245
            ++      N + VID+G G G L  I    +   ++  +   D++Y +++I ++     
Sbjct: 20  GVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGV---DVSYRSLEIAQERLDRL 76

Query: 246 ---NKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG 302
                   ++++    L   +      D           L  + + +       F +P  
Sbjct: 77  RLPRNQWERLQLIQGALTYQDKRFHGYDAATV-IEVIEHLDLSRLGAFERVLFEFAQPKI 135

Query: 303 VVC--PNR 308
           V+   PN 
Sbjct: 136 VIVTTPNI 143

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 186 TESYKSAILNNKSL---FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI 242
             +  S +L           K V D+GAGTG+LS  A   GA +V  +E    A   +D+
Sbjct: 31  PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEA---VDV 87

Query: 243 IRKN--KYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKP 300
           + +N  ++  + +V+   + +       VDI+I                ++ A     + 
Sbjct: 88  LIENLGEFKGKFKVFIGDVSEFNSR---VDIVIMNPPFGSQRKHADRPFLLKA----FEI 140

Query: 301 DGVV 304
             VV
Sbjct: 141 SDVV 144

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 133 TESYKSAILNNNSL---FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
             +  S +L           K V D+GAGTG+LS  A   GA +V  +E  
Sbjct: 31  PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVD 81

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 12/136 (8%)

Query: 181 GTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSDIAYE 238
            T  R   ++ A+   + L     V  V  G     +    +     ++  I   D   E
Sbjct: 100 ATRERHGHFRRALQ--RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGI---DYDPE 154

Query: 239 TIDI----IRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDAR 294
            +D        +    QI ++ +    ++   E  D++ S  +  +   +  +  +    
Sbjct: 155 ALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRF 213

Query: 295 NRFLKPDGVVCPNRFT 310
            + LKP G +  +  T
Sbjct: 214 WQALKPGGALVTSFLT 229

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 22/126 (17%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKLL 259
               +ID+ +G GI+ +  +    AK+  +E  +   +     +  N+ + QIE+    L
Sbjct: 49  RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 108

Query: 260 EDV--ELPVESVDIIISEWMGYFLLFET------------------MIDSVIDARNRFLK 299
           + +   +P E  DI+      YF   +T                   ++  I      LK
Sbjct: 109 KKITDLIPKERADIVTCN-PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK 167

Query: 300 PDGVVC 305
             G   
Sbjct: 168 QGGKAN 173

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 3/113 (2%)

Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDS 250
           S +L    +      +D+G G G  S++ A  G   V A +K+ ++   ++ I+  +   
Sbjct: 22  SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLD 80

Query: 251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
            +      L ++       D I+S  +  F L    I  +I    R  KP G 
Sbjct: 81  NLHTRVVDLNNLTFD-RQYDFILSTVVLMF-LEAKTIPGLIANMQRCTKPGGY 131

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 196 NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVY 255
           N      + VID G G GIL+  +   GA  V A    DI  + I+  ++N     +   
Sbjct: 46  NDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAF---DIDPDAIETAKRN--CGGVNFM 100

Query: 256 HKLLEDVELPVESV 269
              + ++    ++ 
Sbjct: 101 VADVSEISGKYDTW 114

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT-----ESYKSAILNNKSLFN 201
              + VID G G GIL+  +   GA  V A +     I T           + +   +  
Sbjct: 50  IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISG 109

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEK---SDIAYETIDIIRKNKYDSQIEVYHKL 258
                 +    G +   + +A   K F       S    +  D +R+ ++ ++ +V+ + 
Sbjct: 110 KYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRR-EFSARGDVFREE 168

Query: 259 LEDVELP 265
              + +P
Sbjct: 169 KVYITVP 175

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN 246
           L  +  V+DVG G+G +++  A+     V+AI+  D     I++ ++N
Sbjct: 33  LNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLD---GAIEVTKQN 76

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK 179
           L  +  V+DVG G+G +++  A+     V+AI+ 
Sbjct: 33  LNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDY 65

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETID 241
           P   + Y  ++        N  ++D+GAGTG+LS     +   A    +   D++ + ++
Sbjct: 26  PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLV---DMSEKMLE 82

Query: 242 IIR-KNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKP 300
           I + + + + +++         +   E  D+++S    + L  E     +       LK 
Sbjct: 83  IAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDED-KKELYKRSYSILKE 140

Query: 301 DGVV 304
            G+ 
Sbjct: 141 SGIF 144

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 15/129 (11%)

Query: 191 SAILNNKSLFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIEKSDIAYETIDIIRK---- 245
             ++      N K VID+G G G L  +        ++  +   D++Y  ++  +     
Sbjct: 19  GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGV---DVSYSVLERAKDRLKI 75

Query: 246 ----NKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPD 301
                    +I ++   L   +      D      +   L  E  + +       F +P 
Sbjct: 76  DRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQ 134

Query: 302 GVV--CPNR 308
            V+   PN+
Sbjct: 135 TVIVSTPNK 143

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 49.2 bits (117), Expect = 5e-07
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 19/152 (12%)

Query: 167 AQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAK 226
           A   AA+V+ +    T  RT  YK+ +L          V+DV  GTG+ SI   + G   
Sbjct: 23  ADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-FS 81

Query: 227 VFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVEL----------PVESVDIIISEW 276
           V ++   D + + +    K +++ + E         E             +  D +I   
Sbjct: 82  VTSV---DASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLG 138

Query: 277 --MGYFLLFETMIDSVIDA-RN--RFLKPDGV 303
               +    +        A +N    ++P G+
Sbjct: 139 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 170

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 11/106 (10%)

Query: 204 HVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
            V+DVG G G    + ++      KV+AI   D+  E ++   +      ++    L  +
Sbjct: 40  TVLDVGTGAGFYLPYLSKMVGEKGKVYAI---DVQEEMVNYAWEKVNKLGLKNVEVLKSE 96

Query: 262 VE---LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
                LP  +VD I      +  L  +     ++   R  KP   +
Sbjct: 97  ENKIPLPDNTVDFIFMA-FTFHEL--SEPLKFLEELKRVAKPFAYL 139

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 15/101 (14%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE 263
            ++DVG+GTG  +   A  G  ++  +   + A   +++ R+      +  +H  + D+ 
Sbjct: 44  VILDVGSGTGRWTGHLASLG-HQIEGL---EPATRLVELARQT--HPSVTFHHGTITDLS 97

Query: 264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
              +    +++ W     +    +   + A    ++  G +
Sbjct: 98  DSPKRWAGLLA-WYSLIHMGPGELPDALVALRMAVEDGGGL 137

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDSQIEVYHKLL 259
           +K V+D GAG  +  +        K + I   +I+   +        + + ++ +    +
Sbjct: 24  DKTVLDCGAGGDLPPLSIFVEDGYKTYGI---EISDLQLKKAENFSRENNFKLNISKGDI 80

Query: 260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
             +    ES+  + S    + +     +   ID   R LKP G+ C
Sbjct: 81  RKLPFKDESMSFVYSYGTIFHMRKND-VKEAIDEIKRVLKPGGLAC 125

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK--NKYDSQIEVYH 256
                 ++ +  G G  + F A  G  +V A+++S +    +   ++   +   +I    
Sbjct: 27  QIPQGKILCLAEGEGRNACFLASLG-YEVTAVDQSSVG---LAKAKQLAQEKGVKITTVQ 82

Query: 257 KLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGV 303
             L D ++  ++ + I+     +  L  ++   +     + LKP GV
Sbjct: 83  SNLADFDIVADAWEGIV---SIFCHLPSSLRQQLYPKVYQGLKPGGV 126

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 34/129 (26%)

Query: 198 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN---- 246
           S+FN           +D+ +G+G L+I A   G  K   IEK+   +  + +I++N    
Sbjct: 34  SIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKN---FAALKVIKENIAIT 90

Query: 247 KYDSQIEVYH----KLLEDVELPVESVDIIISEWMGYFL-------LFETMIDSVIDARN 295
           K   + EV      + LE         D++        L          + ++ +++   
Sbjct: 91  KEPEKFEVRKMDANRALEQFYEEKLQFDLV-------LLDPPYAKQEIVSQLEKMLE--R 141

Query: 296 RFLKPDGVV 304
           + L  + V+
Sbjct: 142 QLLTNEAVI 150

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
             +V++ G GTG L+     AG   V+ I   + + E   I ++ K   +  +       
Sbjct: 46  FGNVLEFGVGTGNLTNKLLLAG-RTVYGI---EPSREMRMIAKE-KLPKEFSITEGDFLS 100

Query: 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
            E+P  S+D I+S    +  L +   +  I   ++ L   G + 
Sbjct: 101 FEVP-TSIDTIVS-TYAFHHLTDDEKNVAIAKYSQLLNKGGKIV 142

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Length = 177

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 31/126 (24%)

Query: 198 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN---- 246
           ++FN          V+D+ AG+G L+I A   G +    +EK+    +   II+ N    
Sbjct: 21  AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKN---RKAQAIIQDNIIMT 77

Query: 247 KYDSQIEVYHK-LLEDVELPVESVDIIISEWMGYFL-------LFETMIDSVIDARNRFL 298
           K +++  +        ++      D++       FL            I+++  A    L
Sbjct: 78  KAENRFTLLKMEAERAIDCLTGRFDLV-------FLDPPYAKETIVATIEAL--AAKNLL 128

Query: 299 KPDGVV 304
               +V
Sbjct: 129 SEQVMV 134

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 16/113 (14%)

Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN----KYDSQIEVY 255
                 ID+G+G G LSI  A+     + A+   D +    +I  KN      + +I++ 
Sbjct: 42  ITAGTCIDIGSGPGALSIALAKQSDFSIRAL---DFSKHMNEIALKNIADANLNDRIQI- 97

Query: 256 HKLLEDVE-LPVE--SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
             +  DV  +P+E    D+I+S    +F      + +      R LK  G   
Sbjct: 98  --VQGDVHNIPIEDNYADLIVSRGSVFFW---EDVATAFREIYRILKSGGKTY 145

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 11/106 (10%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
              V+DVG G G  +   ++ G  K   +   DI+   I   ++      +      L  
Sbjct: 54  EAEVLDVGCGDGYGTYKLSRTG-YKAVGV---DISEVMIQKGKERGEGPDLSFIKGDLSS 109

Query: 262 VELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVVC 305
           +    E  + I++         E   +    ++   R LK DG  C
Sbjct: 110 LPFENEQFEAIMA-----INSLEWTEEPLRALNEIKRVLKSDGYAC 150

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 2/117 (1%)

Query: 196 NKSLFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYET-IDIIRKNKYDSQIE 253
               F  + V+D+G   G L++  A + G +++  ++       +    IR    +    
Sbjct: 41  KPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRL 100

Query: 254 VYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT 310
               L  D     E     + +   +          +   +      D  V PN   
Sbjct: 101 PPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVV 157

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 46.5 bits (109), Expect = 5e-06
 Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 101 EGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTG 160
                 ++  K+ + +Y   + +     +  R    K         F  + V+D+G   G
Sbjct: 5   PAAGFKKQQRKFQYGNYCKYYGYRNPSCEDGRLRVLKP------EWFRGRDVLDLGCNVG 58

Query: 161 ILSI-FAAQAGAAKVFAIEKSGTPIR 185
            L++  A + G +++  ++     I 
Sbjct: 59  HLTLSIACKWGPSRMVGLDIDSRLIH 84

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 17/122 (13%), Positives = 43/122 (35%), Gaps = 15/122 (12%)

Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYH 256
                 + V+D+G G G       + G  +   ++ ++     I      K++  +    
Sbjct: 37  PYFKGCRRVLDIGCGRGEFLELCKEEG-IESIGVDINEDM---IKFCEG-KFN--VVKSD 89

Query: 257 KLLEDVELPVESVDIIISEWMGYFL--LFETMIDSVIDARNRFLKPDGVV---CPNRFTL 311
            +     LP + +D ++   + +F+  L    +  ++      +K    +    PN  +L
Sbjct: 90  AIEYLKSLPDKYLDGVM---ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL 146

Query: 312 SL 313
             
Sbjct: 147 YS 148

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVY 255
           + L     V+D+G G+G+L+I A + G  K   ++   +         ++N    +    
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRN--GVRPRFL 172

Query: 256 HKLLEDVELPVESVDIII 273
              LE   LP    D+++
Sbjct: 173 EGSLEAA-LPFGPFDLLV 189

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 149 NKHVIDVGAGTGILSIFAAQAGAAKVFAI 177
              V+D+G G+G+L+I A + G  K   +
Sbjct: 121 GDKVLDLGTGSGVLAIAAEKLG-GKALGV 148

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 5/115 (4%)

Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK-NKYDS 250
             + +         +D GAG G ++        A    +E        ++  ++      
Sbjct: 84  NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHM---LEEAKRELAGMP 140

Query: 251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
             +     +E   LP  + D+I+ +W   +L     +      + + L P+G + 
Sbjct: 141 VGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQ-QALTPNGYIF 194

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 11/124 (8%)

Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEV----YHKL 258
             +ID   G G  + F +Q    +V  +   D++   ++I  K    + I          
Sbjct: 58  LPLIDFACGNGTQTKFLSQFF-PRVIGL---DVSKSALEIAAKENTAANISYRLLDGLVP 113

Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG---VVCPNRFTLSLCG 315
            +  ++  E  D  I    G+  +     + +  +    L   G   ++      +    
Sbjct: 114 EQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFN 173

Query: 316 AYAE 319
           +  E
Sbjct: 174 SLLE 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 45/269 (16%), Positives = 91/269 (33%), Gaps = 66/269 (24%)

Query: 49  RSVILVLSVTIMSPPACSDLEE------KNAEID---MRNEDIAQMRHLMQDMLNKKEED 99
           + ++ V     +    C D+++         EID   M  + ++    L   +L+K+EE 
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 100 EEGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSA---ILNNNSLFNNKHVIDVG 156
            +   +      Y F     + I  E  + ++ T  Y      + N+N +F   +V    
Sbjct: 79  VQKFVEEVLRINYKFLM---SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---- 131

Query: 157 AGTGILSIFAAQAGAAKVFAIEKSGTPIRTESY---KSAILNNKSLFNNKHVIDVG-AGT 212
                                       R + Y   + A+L  +     K+V+  G  G+
Sbjct: 132 ---------------------------SRLQPYLKLRQALLELRP---AKNVLIDGVLGS 161

Query: 213 GILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES-VD 270
           G  +  A     +     +    I +  +++   N  ++ +E+  KLL  ++    S  D
Sbjct: 162 G-KTWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 271 IIISEWMGYFLLFETMIDSVIDARNRFLK 299
              +         +  I S+     R LK
Sbjct: 219 HSSNI--------KLRIHSIQAELRRLLK 239

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 14/121 (11%)

Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKL 258
           L     ++++G G G  +     AG   V A    D + E      +        V   L
Sbjct: 41  LPAGAKILELGCGAGYQAEAMLAAG-FDVDAT---DGSPELAAEASRR---LGRPVRTML 93

Query: 259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA 318
              ++   ++ D + +      +  +  +  V+    R LKP G      F  S      
Sbjct: 94  FHQLDAI-DAYDAVWAHACLLHVPRDE-LADVLKLIWRALKPGG-----LFYASYKSGEG 146

Query: 319 E 319
           E
Sbjct: 147 E 147

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
              ++D G G G +  + ++ G   V      D+    ID  +++    +       L  
Sbjct: 47  GAKILDAGCGQGRIGGYLSKQG-HDVLGT---DLDPILIDYAKQD--FPEARWVVGDLSV 100

Query: 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
            ++     D+I+S       L E   +  +   +R L  DG   
Sbjct: 101 DQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 44.8 bits (106), Expect = 9e-06
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 10/114 (8%)

Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI-IRKNKYDSQIEVYHK 257
               + + D+G G+G +S+    AG  +   IE      E I   I       ++     
Sbjct: 53  PRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG 111

Query: 258 LLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311
                   +   + +       F+       ++ D    +L P   +  N  TL
Sbjct: 112 TAPAALADLPLPEAV-------FIGGGGS-QALYDRLWEWLAPGTRIVANAVTL 157

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 11/104 (10%)

Query: 203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV 262
             V+++ +GTG  +   +     +V A+   D + E I    ++  D+ +E   + L D 
Sbjct: 48  GDVLELASGTGYWTRHLSGLA-DRVTAL---DGSAEMIAEAGRHGLDN-VEFRQQDLFDW 102

Query: 263 ELPVESVDIIISEWMGYFLLF--ETMIDSVIDARNRFLKPDGVV 304
             P    D +   +  ++L    +   ++  ++    + P GVV
Sbjct: 103 T-PDRQWDAV---FFAHWLAHVPDDRFEAFWESVRSAVAPGGVV 142

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 11/128 (8%)

Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQ--AGAAKVFAIEKS----DIAYETI--DI 242
              L +    +   ++D G G+G L             +  ++ S      A + +   +
Sbjct: 711 EYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKL 770

Query: 243 IRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG 302
            ++        +Y   + + +  +  VDI          + E       +       P  
Sbjct: 771 NKEACNVKSATLYDGSILEFDSRLHDVDIGTC-LEVIEHMEEDQACEFGEKVLSLFHPKL 829

Query: 303 VVC--PNR 308
           ++   PN 
Sbjct: 830 LIVSTPNY 837

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK--NKYDSQIEVYH 256
           + +   V+D+G G G  S++ +  G   V + + ++ +   I  + +   K +  I    
Sbjct: 118 IISPCKVLDLGCGQGRNSLYLSLLG-YDVTSWDHNENS---IAFLNETKEKENLNISTAL 173

Query: 257 KLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
             +    +  E+ D I+S  +  FL  E  + S+I          G  
Sbjct: 174 YDINAANIQ-ENYDFIVSTVVFMFLNRER-VPSIIKNMKEHTNVGGYN 219

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDSQIEVYHKLL 259
              V+D+  G G  S      G  +V  +   DI+ + I   R+     +S +E      
Sbjct: 39  RGKVLDLACGVGGFSFLLEDYG-FEVVGV---DISEDMIRKAREYAKSRESNVEFIVGDA 94

Query: 260 EDVELPVESVDIIIS-EWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
             +    ++ D +I  + + +F   E  ++ V     R LKP G   
Sbjct: 95  RKLSFEDKTFDYVIFIDSIVHFEPLE--LNQVFKEVRRVLKPSGKFI 139

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
           N   V+D+G GTG  S+F  + G  +V  +   D + E +++ R+        V     E
Sbjct: 54  NPCRVLDLGGGTGKWSLFLQERG-FEVVLV---DPSKEMLEVAREKGVK---NVVEAKAE 106

Query: 261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           D+  P  + + +++  +G  L +    D       R L PDG++ 
Sbjct: 107 DLPFPSGAFEAVLA--LGDVLSYVENKDKAFSEIRRVLVPDGLLI 149

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 201 NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKS----DIAYETIDIIRKNKYDSQIEVY 255
               + D+GAG G   +  A     A+V   E+S    + A  ++++     + ++IEV 
Sbjct: 36  RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95

Query: 256 H-------KLLEDVELPVESVDIIIS 274
                   K   +  LP E    +I 
Sbjct: 96  EADVTLRAKARVEAGLPDEHFHHVIM 121

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 204 HVIDVGAGTGILSIFAAQAGA-AKVFAIEKSDIAYETIDIIRKNKYD---SQIEVYHKLL 259
            V++ G G G  ++  A+    A++ +I   DI+ E+++  R+N        ++     +
Sbjct: 40  KVLEAGCGIGAQTVILAKNNPDAEITSI---DISPESLEKARENTEKNGIKNVKFLQANI 96

Query: 260 EDVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVVC 305
             +     S D I   ++      E +      + +  + LKP G + 
Sbjct: 97  FSLPFEDSSFDHIFVCFV-----LEHLQSPEEALKSLKKVLKPGGTIT 139

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAY-ETIDIIRKN 246
           +     L   K V ++GAG G++SI A  AGA +V A   +D    E ++ +  N
Sbjct: 71  LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVA---TDYPDPEILNSLESN 122

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFA 176
           +     L   K V ++GAG G++SI A  AGA +V A
Sbjct: 71  LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVA 107

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Length = 201

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 36/130 (27%)

Query: 198 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN---- 246
           +LFN           +D  AG+G L   A    A KV  +E         + ++KN    
Sbjct: 43  TLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD---KTVANQLKKNLQTL 99

Query: 247 -KYDSQIEVYH----KLLEDVELPVESVDIIISEWMGYFL-------LFETMIDSVIDAR 294
                Q EV +      L+  +      D++       FL       L E  I  +    
Sbjct: 100 KCSSEQAEVINQSSLDFLKQPQNQ-PHFDVV-------FLDPPFHFNLAEQAISLL--CE 149

Query: 295 NRFLKPDGVV 304
           N +LKP+ ++
Sbjct: 150 NNWLKPNALI 159

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSD--IAYETIDIIRKNKYDSQIEVYHK 257
            K ++DVG G G  ++  AQ      ++   + S   I    +           +     
Sbjct: 37  RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKIS 96

Query: 258 LLEDVE------LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
             +D +      +  + +D+I +    ++  FE    S        L+ DG + 
Sbjct: 97  SSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSA----YANLRKDGTIA 146

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 199 LFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHK 257
              ++ + D+G G+G ++I              E S+   E I     N   S      +
Sbjct: 23  PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQ 82

Query: 258 LLEDV--ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL 311
                  ++P ++ D+I    +G  L    +  +        L   G +  N  T+
Sbjct: 83  GAPRAFDDVP-DNPDVIF---IGGGLTAPGVFAAAWKR----LPVGGRLVANAVTV 130

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 Length = 202

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 30/125 (24%)

Query: 198 SLFN-------NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYD- 249
           +LFN       +   +D  AG+G L + A    AA    IE           + KN    
Sbjct: 44  TLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMD---RAVSQQLIKNLATL 100

Query: 250 --SQIEVYHK-LLEDVELPVESVDIIISEWMGYFL-------LFETMIDSVIDARNRFLK 299
                 V +   +  +       +I+       F+       L E  I+ +    N +L 
Sbjct: 101 KAGNARVVNSNAMSFLAQKGTPHNIV-------FVDPPFRRGLLEETINLL--EDNGWLA 151

Query: 300 PDGVV 304
            + ++
Sbjct: 152 DEALI 156

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 196 NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVY 255
              L     ++ +G G   LS      G   V +++ S +      +     +  Q+   
Sbjct: 37  EPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAA--MQACYAHVPQLRWE 94

Query: 256 HKLLEDVELPVESVDIIIS 274
              +  ++ P  S D+++ 
Sbjct: 95  TMDVRKLDFPSASFDVVLE 113

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 9/104 (8%)

Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETI-DIIRKNKYDSQIEVYHKLLEDV 262
            ++D+G+G+G +    A+        I+ S +          +     ++   H      
Sbjct: 39  RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98

Query: 263 ELPVESVDIIISEWMGYFLLFETM--IDSVIDARNRFLKPDGVV 304
            +  E  D+                      +   + LKP G++
Sbjct: 99  -VANEKCDVAACVGA-----TWIAGGFAGAEELLAQSLKPGGIM 136

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 12/113 (10%)

Query: 204 HVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYE-TIDIIRKNKYDSQIEVYHKLLE 260
            V+D   G G  + F A       +VF  +  D A   T   +       ++ +     +
Sbjct: 25  TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ 84

Query: 261 DVELPV-ESVDIII-------SEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           +++  +   V  ++       S         ET I ++  A    L   G++ 
Sbjct: 85  NMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAM-ELLVTGGIIT 136

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 12/112 (10%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHK---- 257
           +  ++D+G G+G +S+  A  G   V  I   DI  E I +         +         
Sbjct: 31  DDEILDIGCGSGKISLELASKG-YSVTGI---DINSEAIRLAETAARSPGLNQKTGGKAE 86

Query: 258 -LLEDVE-LPVE--SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
             +E+   L     S D  + +     +        +I    R LKP   + 
Sbjct: 87  FKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLY 138

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSDIAYETIDIIRKNKYD 249
           +  L+   L ++  + D+GAG+  +SI A+      ++FA+E++      I    K    
Sbjct: 30  AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA 89

Query: 250 SQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF 309
             + +      +    +   D +     G       M++ +IDA +R LK +GV+  N  
Sbjct: 90  RNVTLVEAFAPEGLDDLPDPDRVFIGGSG------GMLEEIIDAVDRRLKSEGVIVLNAV 143

Query: 310 TL 311
           TL
Sbjct: 144 TL 145

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN-KYDSQIEVYHKLLE 260
           N  V+D+G+G G   ++  +   A    I   DI    +++  +    +++I      + 
Sbjct: 56  NSKVLDIGSGLGGGCMYINEKYGAHTHGI---DICSNIVNMANERVSGNNKIIFEANDIL 112

Query: 261 DVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVV 304
             E P  + D+I S      +L  ++ +   +     ++LKP G +
Sbjct: 113 TKEFPENNFDLIYSRDA---ILALSLENKNKLFQKCYKWLKPTGTL 155

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 16/105 (15%), Positives = 40/105 (38%), Gaps = 1/105 (0%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
                +D GAG G ++         +V  ++ ++            +       +   L+
Sbjct: 79  GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 138

Query: 261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           D     +S D+I  +W+   L  + + + +   +   L+P+G++ 
Sbjct: 139 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK-GSLRPNGIIV 182

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQ 251
           AI+N  +L     + D+GAGTG  S+  A  G   V+A+   + +         +    Q
Sbjct: 25  AIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAV---EPSIVMRQQAVVH---PQ 77

Query: 252 IEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           +E +    E++ LP +SVD +IS      +   + ++       R ++   +V 
Sbjct: 78  VEWFTGYAENLALPDKSVDGVIS---ILAIHHFSHLEKSFQEMQRIIRDGTIVL 128

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Length = 189

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 26/126 (20%)

Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQI 252
           I+  +       V+D+ AG+G L + A   GAA V  +E       +  +I +N     +
Sbjct: 36  IVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESD---QRSAAVIARNIEALGL 92

Query: 253 EVYHKLLEDVE-----LPVESVDIIISEWMGYFL---------LFETMIDSVIDARNRFL 298
                    V           VD++                    + ++ ++    N + 
Sbjct: 93  SGATLRRGAVAAVVAAGTTSPVDLV-------LADPPYNVDSADVDAILAAL--GTNGWT 143

Query: 299 KPDGVV 304
           +   V 
Sbjct: 144 REGTVA 149

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 12/79 (15%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY-----DSQIEVYH 256
           +  ++D+G G G++ I  A          + +  A   I + ++N       +  I V H
Sbjct: 53  DDDILDLGCGYGVIGIALADE-VKSTTMADINRRA---IKLAKENIKLNNLDNYDIRVVH 108

Query: 257 K-LLEDVELPVESVDIIIS 274
             L E+V       + II+
Sbjct: 109 SDLYENV--KDRKYNKIIT 125

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE 263
            V+D+GAG G  ++  +     +   +   D   E +++      +  +E         E
Sbjct: 24  RVLDIGAGAGHTALAFSPYV-QECIGV---DATKEMVEVASSFAQEKGVENVRFQQGTAE 79

Query: 264 -LPVE--SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
            LP    S DII      Y     + +   +    R LK DG  
Sbjct: 80  SLPFPDDSFDIITC---RYAAHHFSDVRKAVREVARVLKQDGRF 120

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
               ++DV  GTG       +        +   +++ + +   RK        ++   + 
Sbjct: 40  EASSLLDVACGTGTHLEHFTKEF-GDTAGL---ELSEDMLTHARKR--LPDATLHQGDMR 93

Query: 261 DVELPVESVDIIISEW--MGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           D  L       ++S +  +GY       + + + +    L+P GVV 
Sbjct: 94  DFRLG-RKFSAVVSMFSSVGYL-KTTEELGAAVASFAEHLEPGGVVV 138

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN--KYDSQIEVYHKL 258
                +D+  GTG L+           +A+   D++ E +            +  +  + 
Sbjct: 37  VFDDYLDLACGTGNLTENLCPKF-KNTWAV---DLSQEMLSEAENKFRSQGLKPRLACQD 92

Query: 259 LEDVELPVESVDIIISEW--MGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           + ++ +     D+I        Y ++    +     A +  LK  GV  
Sbjct: 93  ISNLNIN-RKFDLITCCLDSTNY-IIDSDDLKKYFKAVSNHLKEGGVFI 139

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN-- 246
           +   I    +    + V+D+  GTGI ++  A+ G  +V  +   D+  E + + R+   
Sbjct: 29  FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGL---DLHEEMLRVARRKAK 84

Query: 247 KYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           + + +IE     + ++       D +   +       E  +  +       LKP GV  
Sbjct: 85  ERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLE 260
               ++DV  GTG+     A +    V  +   +++ + + I R+   +    ++H  + 
Sbjct: 50  KAASLLDVACGTGMHLRHLADSF-GTVEGL---ELSADMLAIARRR--NPDAVLHHGDMR 103

Query: 261 DVELPVESVDIIISEW--MGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           D  L       +   +  +G+ L  +  +D+ ++     + PDGVV 
Sbjct: 104 DFSLG-RRFSAVTCMFSSIGH-LAGQAELDAALERFAAHVLPDGVVV 148

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 41/236 (17%), Positives = 80/236 (33%), Gaps = 23/236 (9%)

Query: 77  MRNEDIAQMRHLMQDMLNKKEEDEEGENKTRRHDKY----YFNSYEDAHIHAEMIKDTVR 132
           MR + I      ++++L+K+  +E  +   +R  +           +   +   I +   
Sbjct: 1   MRTQGIKPR---IREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYA 57

Query: 133 TESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRTESYKS 191
                  +L    +       D     G  ++    + G      + K          + 
Sbjct: 58  EVLGVKTVLRKGHIHGETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERV 117

Query: 192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI-IRKNKYDS 250
            +        ++ V+D+ AG G LS+  A  G AKV AIEK    ++ +   I  NK + 
Sbjct: 118 RMAKVAK--PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVED 175

Query: 251 QIEVYHKLLEDVE--LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
           ++  Y+    D          D I+   MGY +     I   +       K   ++
Sbjct: 176 RMSAYN---MDNRDFPGENIADRIL---MGYVVRTHEFIPKALSI----AKDGAII 221

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 17/109 (15%)

Query: 204 HVIDVGAGTGI-LSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV 262
            ++ +GA  G   S  A  A    V+AIE +       +++        I     +L D 
Sbjct: 77  KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR--ELLDACAERENIIP---ILGDA 131

Query: 263 ELP------VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
             P      VE VD+I  +            + +I     FLK  G   
Sbjct: 132 NKPQEYANIVEKVDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGM 175

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 17/111 (15%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLL 259
             H++D G G G L +         +K   I   D     +   R+       +   + L
Sbjct: 23  PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI---DSGETLLAEARELFRLLPYDS--EFL 77

Query: 260 E-DVE-LPVE-SVDIIISEWMGYFLLFETMID--SVIDARNRFLKPDGVVC 305
           E D   + +    DI I            M    +++      +K  G + 
Sbjct: 78  EGDATEIELNDKYDIAICHA-----FLLHMTTPETMLQKMIHSVKKGGKII 123

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Length = 353

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 190 KSAILNNKSLFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY 248
           K  +           V+D+  G GI S IF  +    +   +EK          +     
Sbjct: 47  KLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRS---SLYKFLNAKFE 103

Query: 249 DSQIEVYHK 257
            S +++  +
Sbjct: 104 GSPLQILKR 112

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 9/119 (7%)

Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQI 252
            L          V+D+G G G   +   +AG  + + +   DIA  +I+  R    + + 
Sbjct: 56  CLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGV---DIAEVSINDARVRARNMKR 112

Query: 253 EVYHKLL-----EDVELPVESVDIIISEW-MGYFLLFETMIDSVIDARNRFLKPDGVVC 305
                              +  D+I S++   Y       +D       R L+P G   
Sbjct: 113 RFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.97
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.9
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.9
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.9
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.89
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.86
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.79
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.78
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.74
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.72
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.71
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.71
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.7
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	99.7
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.7
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.69
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.69
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.69
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.69
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.68
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.68
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.68
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.67
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.67
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.66
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.66
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.66
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.66
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.65
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.65
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.65
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.64
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.64
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.64
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.64
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.64
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.64
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.64
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.64
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.63
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.63
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.63
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.63
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.63
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.62
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.62
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.62
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.62
3ocj_A	305	Putative exported protein; structural genomics, PS	99.62
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.62
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.62
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.61
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.61
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.61
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.61
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.61
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.61
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.6
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.6
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.6
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.6
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.6
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.6
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.59
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.59
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.59
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.59
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.59
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.58
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.58
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.58
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.58
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.58
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.58
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.58
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.57
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.57
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.57
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.57
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.57
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.57
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.57
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.57
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.56
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.56
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.56
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.56
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.56
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.56
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.56
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.55
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.55
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.55
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.55
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.55
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.55
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.55
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.54
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.54
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.54
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.54
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.54
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.54
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.54
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.53
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.53
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.53
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.53
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.53
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.53
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.53
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.52
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.52
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.52
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.52
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.52
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.52
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.51
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.51
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.51
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.51
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.5
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.5
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.5
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.5
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.5
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.49
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.49
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.49
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.49
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.49
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.49
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.49
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.49
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.49
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.49
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.48
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.48
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.48
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.48
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.48
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.48
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.48
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.47
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.47
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.47
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.47
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.46
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.46
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.46
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.46
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.46
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.46
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.45
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.45
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.45
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.45
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.45
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.45
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.45
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.45
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.44
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.44
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.44
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.44
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.44
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.43
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.43
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.43
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.43
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.43
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.43
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.43
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.43
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.42
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.42
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.42
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.42
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.42
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.41
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.41
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.41
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.41
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.4
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.4
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.4
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.4
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.4
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.39
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.39
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.39
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.39
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.39
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.39
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.39
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.39
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.38
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.38
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.38
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.38
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.37
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.37
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.36
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.36
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.35
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.35
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.35
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.35
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.34
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.34
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.34
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.34
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.33
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.33
2o07_A	304	Spermidine synthase; structural genomics, structur	99.33
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.32
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.31
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.31
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.31
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.3
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.3
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.3
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.29
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.29
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.28
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.28
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.28
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.28
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.28
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.28
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.26
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.26
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.25
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.25
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.24
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.24
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.23
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.23
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.22
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.2
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.2
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.2
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.18
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.18
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.18
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.18
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.17
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.17
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.16
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.16
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.15
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.15
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.15
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.15
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.15
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.14
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.11
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.1
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.1
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.08
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.08
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.07
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.07
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.99
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.96
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.92
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.91
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.87
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.86
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.85
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.85
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.82
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.8
3lkd_A	542	Type I restriction-modification system methyltrans	98.77
3khk_A	544	Type I restriction-modification system methylation	98.76
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.76
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.7
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.69
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.59
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.58
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.54
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.43
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.41
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.32
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.3
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.26
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.23
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.22
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.19
3ufb_A	530	Type I restriction-modification system methyltran	98.19
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.1
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.03
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.98
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.97
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.93
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.87
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.77
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.65
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.59
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.21
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.2
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.15
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.14
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	97.11
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.09
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	97.08
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	97.07
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.07
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.04
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.04
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.03
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	96.96
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.96
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	96.9
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.9
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.79
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	96.78
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.76
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	96.72
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.69
3k6r_A	278	Putative transferase PH0793; structural genomics,	96.65
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	96.63
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	96.53
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	96.53
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	96.53
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	96.52
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	96.51
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.5
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	96.5
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.5
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	96.49
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	96.48
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.47
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.45
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.41
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	96.41
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.39
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.38
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	96.36
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.36
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.34
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.33
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.32
2frn_A	278	Hypothetical protein PH0793; structural genomics,	96.3
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.3
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	96.27
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.27
1ws6_A	171	Methyltransferase; structural genomics, riken stru	96.26
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.25
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.24
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.23
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	96.23
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	96.22
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	96.21
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.2
3lpm_A	259	Putative methyltransferase; structural genomics, p	96.18
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	96.17
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	96.15
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.14
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	96.13
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.13
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	96.13
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	96.11
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	96.1
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	96.1
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.09
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.08
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	96.08
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.08
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	96.04
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	96.04
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.02
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	96.02
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.01
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	96.0
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.0
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	95.99
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	95.97
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	95.97
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	95.95
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.95
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	95.95
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	95.94
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.94
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	95.93
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.93
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	95.92
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	95.89
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	95.88
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	95.87
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	95.87
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	95.86
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	95.86
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.85
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	95.83
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	95.82
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	95.81
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.8
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	95.8
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	95.79
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	95.73
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	95.72
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	95.71
3ege_A	261	Putative methyltransferase from antibiotic biosyn	95.7
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.68
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	95.65
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	95.65
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	95.65
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	95.65
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.62
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	95.61
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.59
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.58
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	95.57
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	95.56
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.52
2p7i_A	250	Hypothetical protein; putative methyltransferase,	95.52
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	95.52
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	95.52
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	95.5
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	95.49
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	95.47
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	95.46
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	95.46
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	95.46
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.46
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	95.45
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.44
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	95.44
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	95.44
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.43
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	95.42
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	95.42
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	95.41
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	95.41
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	95.4
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	95.4
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	95.4
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	95.4
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	95.4
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	95.39
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.37
3i9f_A	170	Putative type 11 methyltransferase; structural gen	95.36
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.36
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	95.34
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	95.33
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	95.33
1xxl_A	239	YCGJ protein; structural genomics, protein structu	95.33
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	95.32
2b25_A	336	Hypothetical protein; structural genomics, methyl	95.31
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	95.29
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.27
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	95.23
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	95.23
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	95.23
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	95.22
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	95.18
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	95.18
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.18
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	95.17
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	95.12
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	95.11
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.11
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	95.09
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	95.08
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	95.07
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	95.06
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	95.06
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.02
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	95.01
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	94.99
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	94.99
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	94.96
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	94.94
2b3t_A	276	Protein methyltransferase HEMK; translation termin	94.94
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	94.93
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	94.91
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	94.89
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	94.89
2h00_A	254	Methyltransferase 10 domain containing protein; st	94.84
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.84
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	94.81
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	94.79
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	94.79
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.77
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	94.76
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	94.75
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	94.75
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	94.69
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	94.68
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	94.62
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	94.59
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	94.56
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	94.55
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	94.51
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	94.5
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	94.48
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	94.47
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	94.47
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	94.45

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.97  E-value=1.1e-31  Score=253.93  Aligned_cols=159  Identities=45%  Similarity=0.748  Sum_probs=141.1

Q ss_pred             CCCcchhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         106 TRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       106 ~~~~~~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .++.|++||++|+++++|+.|++|.+|+..|.++|..|...++|                                    
T Consensus        41 ~~~~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~------------------------------------   84 (376)
T 4hc4_A           41 KRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRG------------------------------------   84 (376)
T ss_dssp             --------CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTT------------------------------------
T ss_pred             cccchhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCC------------------------------------
Confidence            45788999999999999999999999999999999888777777                                    


Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                                       ++|||||||+|.+++++++.|+++|+|||.|++++.|+++++.|++.++|++++++++++.+|
T Consensus        85 -----------------k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp  147 (376)
T 4hc4_A           85 -----------------KTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP  147 (376)
T ss_dssp             -----------------CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred             -----------------CEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC
Confidence                             678888888888888888888889999999998899999999999999999999999999888


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                       ++||+|+|+++++++.++.++..++.+..++|||||.++|+.+++|++|+..
T Consensus       148 -e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~apie~  199 (376)
T 4hc4_A          148 -EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISD  199 (376)
T ss_dssp             -SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred             -ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEEecc
Confidence             7899999999999999999999999999999999999999999999999874

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.90  E-value=7.8e-24  Score=199.15  Aligned_cols=158  Identities=47%  Similarity=0.848  Sum_probs=133.8

Q ss_pred             CcchhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHH
Q psy8709         108 RHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTE  187 (319)
Q Consensus       108 ~~~~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~  187 (319)
                      ....+||++|+++.+|+.|+++..|+..|..++..+..+.++                                      
T Consensus        26 ~~~~~yf~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~--------------------------------------   67 (349)
T 3q7e_A           26 TSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKD--------------------------------------   67 (349)
T ss_dssp             -----------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTT--------------------------------------
T ss_pred             chHHHHHHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCC--------------------------------------
Confidence            356789999999999999999999999999988665443333                                      


Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                                     .+|||+|||+|.++..+++.|..+|+|+|+|++++.|+++++.+++.++++++.+|+++++++.+
T Consensus        68 ---------------~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  132 (349)
T 3q7e_A           68 ---------------KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVE  132 (349)
T ss_dssp             ---------------CEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSS
T ss_pred             ---------------CEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCC
Confidence                           78999999999999999999888999999999999999999999998889999999999988888


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                      +||+|+++++++++.++..+..++.++.++|||||+++|+..++++.++..
T Consensus       133 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~  183 (349)
T 3q7e_A          133 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIED  183 (349)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred             ceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEEEeeecC
Confidence            999999999988888888999999999999999999999999999988753

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.90  E-value=7.4e-24  Score=197.64  Aligned_cols=153  Identities=48%  Similarity=0.859  Sum_probs=137.6

Q ss_pred             hhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHH
Q psy8709         112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKS  191 (319)
Q Consensus       112 ~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~  191 (319)
                      +||++|+++++|..|+++..|+..|..++..+....+                                           
T Consensus         2 ~Yf~~y~~~~~~~~ml~d~~r~~~y~~ai~~~~~~~~-------------------------------------------   38 (328)
T 1g6q_1            2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFK-------------------------------------------   38 (328)
T ss_dssp             CCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-------------------------------------------
T ss_pred             chhhhhcCchHHHHHhcCHHHHHHHHHHHHhhHhhcC-------------------------------------------
Confidence            6999999999999999999999999998765543333                                           


Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI  271 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~  271 (319)
                                +.+|||+|||+|.++..+++.|..+|+|+|++++++.|+++++.+++.++++++.+|+.+++++.++||+
T Consensus        39 ----------~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~  108 (328)
T 1g6q_1           39 ----------DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDI  108 (328)
T ss_dssp             ----------TCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEE
T ss_pred             ----------CCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccE
Confidence                      3789999999999999999988789999999998899999999999988999999999998887789999


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeeccc
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAY  317 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~  317 (319)
                      |+++++++++.++..+..++.++.++|||||.++|+.+++++.++.
T Consensus       109 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~  154 (328)
T 1g6q_1          109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLE  154 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEEC
T ss_pred             EEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEec
Confidence            9999998888888889999999999999999999999999888764

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.90  E-value=2.2e-23  Score=195.36  Aligned_cols=158  Identities=52%  Similarity=0.880  Sum_probs=136.8

Q ss_pred             CCcchhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         107 RRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       107 ~~~~~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .+.+..||++|..+.+|..|+++..|+..|.+++..+....++                                     
T Consensus        23 ~~~d~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~-------------------------------------   65 (340)
T 2fyt_A           23 EDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKD-------------------------------------   65 (340)
T ss_dssp             -------CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTT-------------------------------------
T ss_pred             ccchhhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCC-------------------------------------
Confidence            4566779999999999999999999999999988766554444                                     


Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPV  266 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~  266 (319)
                                      .+|||+|||+|.++..+++.|..+|+|+|+|++++.|+++++.+++.++++++.+|+.+++++.
T Consensus        66 ----------------~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           66 ----------------KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             ----------------CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC
T ss_pred             ----------------CEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC
Confidence                            7899999999999999999877799999999988999999999998889999999999988887


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeeccc
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAY  317 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~  317 (319)
                      ++||+|+++++.+.+.++..+..++.++.++|||||.++|+.+++++.++.
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~  180 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVS  180 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEEC
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEEEec
Confidence            899999999988888888889999999999999999999999999888764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.89  E-value=9.9e-23  Score=193.47  Aligned_cols=157  Identities=44%  Similarity=0.740  Sum_probs=139.9

Q ss_pred             CcchhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHH
Q psy8709         108 RHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTE  187 (319)
Q Consensus       108 ~~~~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~  187 (319)
                      ....+||++|.++..|+.|+.+..|+..|..++..+...+++                                      
T Consensus        23 ~~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~--------------------------------------   64 (376)
T 3r0q_C           23 VDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEG--------------------------------------   64 (376)
T ss_dssp             -----CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTT--------------------------------------
T ss_pred             ccHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCC--------------------------------------
Confidence            456789999999999999999999999999988777665555                                      


Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                                     .+|||+|||+|.++..+++.|..+|+|+|+|++++.|+++++.+++.++++++++|+++++++ +
T Consensus        65 ---------------~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~  128 (376)
T 3r0q_C           65 ---------------KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-E  128 (376)
T ss_dssp             ---------------CEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-S
T ss_pred             ---------------CEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-C
Confidence                           789999999999999999988889999999998899999999999988899999999998877 8


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                      +||+|+++++++++.++..+..++.++.++|||||+++++..+++..|+..
T Consensus       129 ~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~  179 (376)
T 3r0q_C          129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKS  179 (376)
T ss_dssp             CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEECC
T ss_pred             cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEeecc
Confidence            999999999999988888899999999999999999999999999988754

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.86  E-value=1.3e-21  Score=183.84  Aligned_cols=154  Identities=40%  Similarity=0.592  Sum_probs=133.1

Q ss_pred             cchhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHH
Q psy8709         109 HDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTES  188 (319)
Q Consensus       109 ~~~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~  188 (319)
                      ..+.||++|.++..|+.|+++..|+..|..++..+....++                                       
T Consensus        11 ~~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~---------------------------------------   51 (348)
T 2y1w_A           11 SAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKD---------------------------------------   51 (348)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTT---------------------------------------
T ss_pred             cHHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCc---------------------------------------
Confidence            35679999999999999999999999999987666554444                                       


Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                                    .+|||+|||+|.++..+++.|..+|+|+|+|++++.|+++++.+++.++++++.+|+++++++ ++
T Consensus        52 --------------~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~  116 (348)
T 2y1w_A           52 --------------KIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQ  116 (348)
T ss_dssp             --------------CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SC
T ss_pred             --------------CEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-Cc
Confidence                          789999999999999999988789999999997789999999999888999999999988766 68


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeeccc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAY  317 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~  317 (319)
                      ||+|+++++++++..+. ....+..+.++|||||.++++.++++..|+.
T Consensus       117 ~D~Ivs~~~~~~~~~~~-~~~~l~~~~~~LkpgG~li~~~~~~~~~~i~  164 (348)
T 2y1w_A          117 VDIIISEPMGYMLFNER-MLESYLHAKKYLKPSGNMFPTIGDVHLAPFT  164 (348)
T ss_dssp             EEEEEECCCBTTBTTTS-HHHHHHHGGGGEEEEEEEESCEEEEEEEEEC
T ss_pred             eeEEEEeCchhcCChHH-HHHHHHHHHhhcCCCeEEEEecCcEEEEEec
Confidence            99999999877765543 4556678899999999999999999887764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.79  E-value=1.5e-19  Score=180.27  Aligned_cols=115  Identities=30%  Similarity=0.404  Sum_probs=103.1

Q ss_pred             CcceeeccCCCchHHHHHHHcC---CC--EEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAG---AA--KVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g---~~--~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ...|||+|||+|.++.++++++   ..  +|++||.|++...+++..+.|++.++|+++++|++++.+| +++|+|||++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEw  436 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSEL  436 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEc
Confidence            3579999999999966665543   33  7899999998889999999999999999999999999988 7999999999


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                      |++++.+|.++ +++....|+|||||+++|+.+++|++|+++
T Consensus       437 MG~fLl~E~ml-evL~Ardr~LKPgGimiPs~atlyiapi~~  477 (637)
T 4gqb_A          437 LGSFADNELSP-ECLDGAQHFLKDDGVSIPGEYTSFLAPISS  477 (637)
T ss_dssp             CBTTBGGGCHH-HHHHHHGGGEEEEEEEESCEEEEEEEEEEC
T ss_pred             CcccccccCCH-HHHHHHHHhcCCCcEEccccceEEEEEecC
Confidence            99999999887 689999999999999999999999999875

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.78  E-value=9.1e-19  Score=171.03  Aligned_cols=154  Identities=41%  Similarity=0.595  Sum_probs=129.1

Q ss_pred             cchhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHH
Q psy8709         109 HDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTES  188 (319)
Q Consensus       109 ~~~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~  188 (319)
                      ..+.|++.|+....+..|+.+..++..|...+..+....                                         
T Consensus       119 ~~~~~~~~y~~~~~~~~~L~d~~~t~~~~~~il~~l~~~-----------------------------------------  157 (480)
T 3b3j_A          119 SAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDF-----------------------------------------  157 (480)
T ss_dssp             -CCEEEEGGGCSCHHHHHHHHHHHHHHHHHHHHHTGGGT-----------------------------------------
T ss_pred             chhhHHHHHhhhccchhhhcChHhHHHHHHHHHHhhhhc-----------------------------------------
Confidence            344688888888888899999999999888775544332                                         


Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                                  ++.+|||+|||+|.++..+++.+..+|+|+|+|++++.|+++++.+++.++++++.+|+.+++++ ++
T Consensus       158 ------------~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~  224 (480)
T 3b3j_A          158 ------------KDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQ  224 (480)
T ss_dssp             ------------TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SC
T ss_pred             ------------CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CC
Confidence                        33789999999999999999987789999999998899999999999988999999999987766 68


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeeccc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAY  317 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~  317 (319)
                      ||+|+++++++++..+.. ...+..+.++|||||.++++..+++..|+.
T Consensus       225 fD~Ivs~~~~~~~~~e~~-~~~l~~~~~~LkpgG~li~~~~~~~~~pi~  272 (480)
T 3b3j_A          225 VDIIISEPMGYMLFNERM-LESYLHAKKYLKPSGNMFPTIGDVHLAPFT  272 (480)
T ss_dssp             EEEEECCCCHHHHTCHHH-HHHHHHGGGGEEEEEEEESCEEEEEEEEEC
T ss_pred             eEEEEEeCchHhcCcHHH-HHHHHHHHHhcCCCCEEEEEeceeeeeccC
Confidence            999999999887766554 445668899999999999999999888764

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.74  E-value=4.6e-18  Score=145.35  Aligned_cols=140  Identities=21%  Similarity=0.224  Sum_probs=111.0

Q ss_pred             hcCCceEEeeecCCCcccHHHHHHHHhccccc---CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHH
Q psy8709         168 QAGAAKVFAIEKSGTPIRTESYKSAILNNKSL---FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDII  243 (319)
Q Consensus       168 ~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~---~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~  243 (319)
                      ++..+.+.... ...++.++.+.+.+.+.+..   .++.+|||+|||+|.++..++..+..+|+|+|+|+ +++.|++++
T Consensus         9 ~~~g~~l~~~~-~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~   87 (189)
T 3p9n_A            9 VAGGRRIAVPP-RGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNI   87 (189)
T ss_dssp             TTTTCEEECCS-CCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred             ccCCcEecCCC-CCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH
Confidence            34445554444 55667777777777776654   57789999999999999988888878999999999 999999999


Q ss_pred             HhcCCCCcEEEEEcCccccc--cCCCceeEEEeccchhhhcchhhHHHHHHHHhc--ccCCCcEEEeecCcc
Q psy8709         244 RKNKYDSQIEVYHKLLEDVE--LPVESVDIIISEWMGYFLLFETMIDSVIDARNR--FLKPDGVVCPNRFTL  311 (319)
Q Consensus       244 ~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r--~LkpgG~li~~~~t~  311 (319)
                      ..+++ ++++++++|+.+..  ++.++||+|++++++++.  ......++..+.+  +|+|||++++++...
T Consensus        88 ~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A           88 EALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVD--SADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             HHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             HHcCC-CceEEEEccHHHHHhhccCCCccEEEECCCCCcc--hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            99988 78999999998764  335799999999885532  3567888999988  999999999887543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.72  E-value=5.1e-17  Score=146.18  Aligned_cols=120  Identities=17%  Similarity=0.199  Sum_probs=104.2

Q ss_pred             HHHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         187 ESYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       187 ~~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ......++..+. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.++++++..++.++++++.+|+.++++
T Consensus        31 ~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  110 (267)
T 3kkz_A           31 PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF  110 (267)
T ss_dssp             HHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC
T ss_pred             HHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC
Confidence            344445555554 667889999999999999999998767999999999 999999999999988889999999999888


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.++||+|++..+.+++    ++..+++++.++|||||++++...+
T Consensus       111 ~~~~fD~i~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          111 RNEELDLIWSEGAIYNI----GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             CTTCEEEEEESSCGGGT----CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEcCCceec----CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            78899999999887765    4678999999999999999988765

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.71  E-value=4.1e-17  Score=147.27  Aligned_cols=109  Identities=17%  Similarity=0.262  Sum_probs=94.1

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA---GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS  274 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis  274 (319)
                      ..++.+|||+|||+|.++..+++.   +..+|+|+|+|+ |++.|++++...+...+++++++|+.++++  ++||+|++
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~  145 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVL  145 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--ccccccee
Confidence            457789999999999999999885   234899999999 999999999998887899999999998765  47999999


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.+.+++.. .....+|++++++|||||.|++....
T Consensus       146 ~~~l~~~~~-~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          146 NFTLQFLEP-SERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             ESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             eeeeeecCc-hhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            988887643 55678999999999999999986543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.71  E-value=6.9e-17  Score=144.01  Aligned_cols=120  Identities=16%  Similarity=0.224  Sum_probs=103.3

Q ss_pred             HHHHHHHhccc-ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         187 ESYKSAILNNK-SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       187 ~~~~~~i~~~l-~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ......++..+ ...++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.+++++...++.++++++.+|+.++++
T Consensus        31 ~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  110 (257)
T 3f4k_A           31 PEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF  110 (257)
T ss_dssp             HHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC
Confidence            44455555555 5567789999999999999999997555999999999 999999999999987789999999999888


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.++||+|+++.+.+++    +...+++++.++|||||++++...+
T Consensus       111 ~~~~fD~v~~~~~l~~~----~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          111 QNEELDLIWSEGAIYNI----GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             CTTCEEEEEEESCSCCC----CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEecChHhhc----CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            88899999998877665    4678999999999999999988754

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.70  E-value=6.3e-17  Score=144.19  Aligned_cols=122  Identities=13%  Similarity=0.093  Sum_probs=104.5

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ......+.++..+...++.+|||+|||+|.++..+++....+|+|+|+|+ +++.+++++...++.++++++.+|+.+.+
T Consensus        20 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~   99 (256)
T 1nkv_A           20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV   99 (256)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC
Confidence            34566677777778888899999999999999999986344999999999 99999999999888779999999999887


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      + .++||+|++..+.+++   .++..+++++.++|||||.+++....
T Consensus       100 ~-~~~fD~V~~~~~~~~~---~~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          100 A-NEKCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             C-SSCEEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             c-CCCCCEEEECCChHhc---CCHHHHHHHHHHHcCCCeEEEEecCc
Confidence            6 6899999997776665   45688999999999999999987543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=99.70  E-value=7.3e-18  Score=168.00  Aligned_cols=148  Identities=18%  Similarity=0.262  Sum_probs=114.6

Q ss_pred             hhhhhhhchhHHHHHHHHHHHhcCCC-CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhccccc
Q psy8709         121 HIHAEMIKDTVRTESYKSAILNNNSL-FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSL  199 (319)
Q Consensus       121 ~~~~~m~~d~~r~~~~~~~i~~n~~~-~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~  199 (319)
                      ..++.|.+|.+|+..|.++|..+... +++                                                 .
T Consensus       377 ~tYe~fekD~vRy~~Y~~AI~~al~d~~~~-------------------------------------------------~  407 (745)
T 3ua3_A          377 GVYNTFEQDQIKYDVYGEAVVGALKDLGAD-------------------------------------------------G  407 (745)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-------------------------------------------------C
T ss_pred             HHHHHHcCChhhHHHHHHHHHHHHHHhhcc-------------------------------------------------c
Confidence            45779999999999999999876321 110                                                 0


Q ss_pred             CCCcceeeccCCCchHHHHHHHc----C----------CCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA----G----------AAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~----g----------~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      .++..|||+|||+|.++.++.++    +          ..+|+|||.+++...+.+....|++.++|+++++|++++.+|
T Consensus       408 ~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp  487 (745)
T 3ua3_A          408 RKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGI  487 (745)
T ss_dssp             CSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHH
T ss_pred             CCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccc
Confidence            11257888888888887544332    1          239999999993334444444588888999999999999874


Q ss_pred             -----CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         266 -----VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       266 -----~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                           .+++|+|||+++++++..|- ....|..+.++|||||+++|+.+++|++|+++
T Consensus       488 ~~~~~~ekVDIIVSElmGsfl~nEL-~pe~Ld~v~r~Lkp~Gi~iP~~~t~ylaPi~~  544 (745)
T 3ua3_A          488 AKDRGFEQPDIIVSELLGSFGDNEL-SPECLDGVTGFLKPTTISIPQKYTSYVKPIMS  544 (745)
T ss_dssp             HHHTTCCCCSEEEECCCBTTBGGGS-HHHHHHTTGGGSCTTCEEESCEEEEEEEEEEC
T ss_pred             cccCCCCcccEEEEeccccccchhc-cHHHHHHHHHhCCCCcEEECCccEEEEEEecC
Confidence                 48999999999999876653 45677888999999999999999999999875

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.70  E-value=4.3e-17  Score=141.15  Aligned_cols=140  Identities=19%  Similarity=0.164  Sum_probs=104.1

Q ss_pred             cCCceEEeeecCCCcccHHHHHHHHhcccccC-CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc
Q psy8709         169 AGAAKVFAIEKSGTPIRTESYKSAILNNKSLF-NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN  246 (319)
Q Consensus       169 ~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~-~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~  246 (319)
                      +....+........++..+.+.+.+.+.+... ++.+|||+|||+|.++..++..+..+|+|+|+|+ +++.|++++..+
T Consensus        20 ~~g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~   99 (201)
T 2ift_A           20 WRGRKLPVLNSEGLRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL   99 (201)
T ss_dssp             TTTCEEECC---------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             eCCcEecCCCCCCcCcCHHHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHh
Confidence            34444544444445566666666666665443 6789999999999999988887777999999999 999999999998


Q ss_pred             CCC-CcEEEEEcCcccccc--CCCc-eeEEEeccchhhhcchhhHHHHHHHH--hcccCCCcEEEeecCcce
Q psy8709         247 KYD-SQIEVYHKLLEDVEL--PVES-VDIIISEWMGYFLLFETMIDSVIDAR--NRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       247 g~~-~~i~~i~~d~~~~~~--~~~~-fD~Iis~~~~~~l~~~~~~~~~l~~~--~r~LkpgG~li~~~~t~~  312 (319)
                      ++. ++++++.+|+.+...  +.++ ||+|+++++++    ......++..+  .++|+|||.++++.++..
T Consensus       100 ~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          100 KCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH----FNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             TCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCCccceEEEECCHHHHHHhhccCCCCCEEEECCCCC----CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            874 689999999987532  3468 99999998843    25567788888  788999999998887665

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.69  E-value=3.3e-17  Score=141.98  Aligned_cols=144  Identities=15%  Similarity=0.120  Sum_probs=108.3

Q ss_pred             HHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccC-CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHH
Q psy8709         164 IFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLF-NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETID  241 (319)
Q Consensus       164 i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~-~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~  241 (319)
                      +.+..+....+...+....++..+.+.+.+++.+... ++.+|||+|||+|.++..++..+..+|+|+|+|+ +++.|++
T Consensus        16 ii~g~~~g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~   95 (202)
T 2fpo_A           16 IIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIK   95 (202)
T ss_dssp             CCSGGGTTCEEECCCC------CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             EEEEEEcCcEecCCCCCCCCCCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHH
Confidence            3344555666666555556667777777777766543 6789999999999999998887777999999999 9999999


Q ss_pred             HHHhcCCCCcEEEEEcCcccc-ccCCCceeEEEeccchhhhcchhhHHHHHHHHh--cccCCCcEEEeecCcce
Q psy8709         242 IIRKNKYDSQIEVYHKLLEDV-ELPVESVDIIISEWMGYFLLFETMIDSVIDARN--RFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       242 ~~~~~g~~~~i~~i~~d~~~~-~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~t~~  312 (319)
                      ++..+++ ++++++++|+.+. +.+.++||+|+++++++.    .....++..+.  ++|+|||+++++..+..
T Consensus        96 ~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~----~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A           96 NLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR----GLLEETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             HHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSSST----TTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             HHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCCCC----CcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence            9999988 7899999999874 444578999999988432    34556666664  46999999998877654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.69  E-value=2.4e-17  Score=139.75  Aligned_cols=138  Identities=20%  Similarity=0.154  Sum_probs=106.1

Q ss_pred             CceEEeeecCCCcccHHHHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC
Q psy8709         171 AAKVFAIEKSGTPIRTESYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY  248 (319)
Q Consensus       171 a~~V~avd~d~~~~~~~~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~  248 (319)
                      ...+........++..+.+.+.+...+. ..++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|++++..+++
T Consensus        13 ~~~~~~~~~~~~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~   92 (187)
T 2fhp_A           13 GRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE   92 (187)
T ss_dssp             TCBCCCCCCCSSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CccccCCCCCCcCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence            3333333333456667778777777764 456789999999999999998888777999999999 99999999999887


Q ss_pred             CCcEEEEEcCcccccc----CCCceeEEEeccchhhhcchhhHHHHHHHH--hcccCCCcEEEeecCcce
Q psy8709         249 DSQIEVYHKLLEDVEL----PVESVDIIISEWMGYFLLFETMIDSVIDAR--NRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       249 ~~~i~~i~~d~~~~~~----~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~--~r~LkpgG~li~~~~t~~  312 (319)
                      .++++++.+|+.+...    +.++||+|+++++++.    .....++..+  .++|+|||++++..+...
T Consensus        93 ~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A           93 PEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAK----QEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCc----hhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            6789999999977421    2578999999988442    2334555555  899999999998766543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.69  E-value=1.2e-16  Score=143.75  Aligned_cols=122  Identities=17%  Similarity=0.172  Sum_probs=106.5

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ...+.+.++..+...++.+|||+|||+|.++..+++....+|+|+|+|+ +++.+++++...++.++++++.+|+.++++
T Consensus        46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  125 (273)
T 3bus_A           46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF  125 (273)
T ss_dssp             HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC
Confidence            3566677778888888899999999999999999985345999999999 999999999998887789999999999888


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.++||+|++..+.+++   .+...+++++.++|||||++++....
T Consensus       126 ~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          126 EDASFDAVWALESLHHM---PDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             CTTCEEEEEEESCTTTS---SCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             CCCCccEEEEechhhhC---CCHHHHHHHHHHHcCCCeEEEEEEee
Confidence            87899999998877765   45688999999999999999987643

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.69  E-value=4.4e-17  Score=137.43  Aligned_cols=130  Identities=21%  Similarity=0.167  Sum_probs=97.6

Q ss_pred             cCCCcccHHHHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEE
Q psy8709         179 KSGTPIRTESYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYH  256 (319)
Q Consensus       179 ~d~~~~~~~~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~  256 (319)
                      ....++.++.+.+.+.+.+. ..++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|+++++.+++.++++++.
T Consensus         8 ~~~~rp~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~   87 (177)
T 2esr_A            8 GKITRPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK   87 (177)
T ss_dssp             ----------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC
T ss_pred             CCCCCcCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE
Confidence            33455566666777766665 567789999999999999999998777999999999 9999999999998867899999


Q ss_pred             cCcccc-ccCCCceeEEEeccchhhhcchhhHHHHHHHHh--cccCCCcEEEeecCcce
Q psy8709         257 KLLEDV-ELPVESVDIIISEWMGYFLLFETMIDSVIDARN--RFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       257 ~d~~~~-~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~t~~  312 (319)
                      +|+.+. +...++||+|+++++++.    .....++..+.  ++|+|||+++++.....
T Consensus        88 ~d~~~~~~~~~~~fD~i~~~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           88 MEAERAIDCLTGRFDLVFLDPPYAK----ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             SCHHHHHHHBCSCEEEEEECCSSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CcHHHhHHhhcCCCCEEEECCCCCc----chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            999873 333467999999987542    33455566665  99999999998776543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.68  E-value=9.8e-17  Score=138.89  Aligned_cols=119  Identities=19%  Similarity=0.279  Sum_probs=102.5

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ...+.+.+...+...++ +|||+|||+|.++..+++.+..+|+|+|+|+ +++.+++++...+..++++++.+|+.++++
T Consensus        29 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  107 (219)
T 3dlc_A           29 YPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI  107 (219)
T ss_dssp             HHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS
T ss_pred             cHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC
Confidence            34555666666665555 9999999999999999987445999999999 999999999999887799999999999888


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +.++||+|++..+.+++   .++..+++++.++|+|||.+++..
T Consensus       108 ~~~~~D~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          108 EDNYADLIVSRGSVFFW---EDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             CTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccccEEEECchHhhc---cCHHHHHHHHHHhCCCCCEEEEEe
Confidence            88899999998877766   567889999999999999999864

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.68  E-value=1.5e-16  Score=142.41  Aligned_cols=112  Identities=21%  Similarity=0.211  Sum_probs=96.8

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCcee
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVD  270 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD  270 (319)
                      .++..+...++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.+++++...+. .++.++.+|++++++++++||
T Consensus        28 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~fD  105 (260)
T 1vl5_A           28 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFH  105 (260)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecHHhCCCCCCCEE
Confidence            344445566778999999999999999999865 999999999 99999999988887 579999999999888888999


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +|++....+++   .++..++.++.++|||||++++..
T Consensus       106 ~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          106 IVTCRIAAHHF---PNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             EEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEhhhhHhc---CCHHHHHHHHHHHcCCCCEEEEEE
Confidence            99998887776   566799999999999999999853

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.68  E-value=8.2e-17  Score=139.59  Aligned_cols=109  Identities=9%  Similarity=-0.018  Sum_probs=88.7

Q ss_pred             ccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcC-----------CCCcEEEEEcCccccc
Q psy8709         196 NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNK-----------YDSQIEVYHKLLEDVE  263 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g-----------~~~~i~~i~~d~~~~~  263 (319)
                      .+...++.+|||+|||+|..+..+++.|. +|+|+|+|+ |++.|+++.....           ...+++++++|+.+++
T Consensus        17 ~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~   95 (203)
T 1pjz_A           17 SLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT   95 (203)
T ss_dssp             HHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred             hcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence            34455778999999999999999999876 999999999 9999988754310           1257999999999987


Q ss_pred             cCC-CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         264 LPV-ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       264 ~~~-~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ++. ++||+|++..+++++. ......++++++++|||||++++
T Consensus        96 ~~~~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           96 ARDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             HHHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             cccCCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence            654 6899999987776654 45677899999999999998443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.67  E-value=4.7e-16  Score=142.54  Aligned_cols=121  Identities=17%  Similarity=0.123  Sum_probs=105.1

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ....+.++..+...++.+|||+|||+|.++..+++. | .+|+|+|+|+ +++.|++++...++.++++++.+|+.++  
T Consensus        58 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--  134 (302)
T 3hem_A           58 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--  134 (302)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--
Confidence            445667777788888899999999999999999997 7 5999999999 9999999999999877999999999876  


Q ss_pred             CCCceeEEEeccchhhhcch------hhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         265 PVESVDIIISEWMGYFLLFE------TMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~------~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                       .++||+|++..+.+++...      .....+++++.++|||||++++...+.
T Consensus       135 -~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          135 -DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             -CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             -CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence             4899999999888776432      567899999999999999999876643

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.67  E-value=3.2e-16  Score=136.52  Aligned_cols=123  Identities=12%  Similarity=0.097  Sum_probs=102.7

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCC----cEEEEEcCcc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDS----QIEVYHKLLE  260 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~----~i~~i~~d~~  260 (319)
                      ....+.+...+...++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.+++++..+++..    +++++.+|+.
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~   94 (217)
T 3jwh_A           15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT   94 (217)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence            4455666666666778899999999999999999964 46999999999 9999999998887754    8999999998


Q ss_pred             ccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       261 ~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ..+.+.++||+|++..+.+++ .......+++++.++|||||++++....
T Consensus        95 ~~~~~~~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~~~  143 (217)
T 3jwh_A           95 YQDKRFHGYDAATVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTPNI  143 (217)
T ss_dssp             SCCGGGCSCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred             cccccCCCcCEEeeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEccCc
Confidence            777666899999998888776 3356689999999999999988865543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.66  E-value=2.1e-16  Score=137.35  Aligned_cols=118  Identities=16%  Similarity=0.130  Sum_probs=100.5

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+...+...+...++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++....   .+++++.+|+.+.+ +
T Consensus        37 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~-~  111 (216)
T 3ofk_A           37 ERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFS-T  111 (216)
T ss_dssp             HHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCC-C
T ss_pred             HHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCC-C
Confidence            35555565566777778999999999999999999865 999999999 999999887654   38999999999887 5


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .++||+|+++.+.+++.....+..++.++.++|||||.+++++.
T Consensus       112 ~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          112 AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            68999999999888887666778899999999999999998653

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.66  E-value=4.4e-16  Score=135.74  Aligned_cols=123  Identities=15%  Similarity=0.176  Sum_probs=101.3

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCC----cEEEEEcCcc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDS----QIEVYHKLLE  260 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~----~i~~i~~d~~  260 (319)
                      ....+.+...+...++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.+++++..+++..    +++++.+|+.
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~   94 (219)
T 3jwg_A           15 QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV   94 (219)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence            4445566666666677899999999999999999864 36999999999 9999999988777654    8999999998


Q ss_pred             ccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       261 ~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ..+.+.++||+|++..+.+++ .......+++++.++|||||+++.....
T Consensus        95 ~~~~~~~~fD~V~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~~i~~~~~  143 (219)
T 3jwg_A           95 YRDKRFSGYDAATVIEVIEHL-DENRLQAFEKVLFEFTRPQTVIVSTPNK  143 (219)
T ss_dssp             SCCGGGTTCSEEEEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred             ccccccCCCCEEEEHHHHHhC-CHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence            777767899999998887776 3345689999999999999977755443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.66  E-value=3e-16  Score=143.17  Aligned_cols=120  Identities=18%  Similarity=0.119  Sum_probs=104.1

Q ss_pred             HHHHHHHhccc----ccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         187 ESYKSAILNNK----SLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       187 ~~~~~~i~~~l----~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      ....+.++..+    ...++.+|||+|||+|.++..+++. +. +|+|+|+|+ +++.++++....++.++++++.+|+.
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~  142 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL  142 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcc
Confidence            45556666666    6678889999999999999999986 55 999999999 99999999988888789999999999


Q ss_pred             ccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       261 ~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +++++.++||+|++..+.+++   .++..+++++.++|||||++++....
T Consensus       143 ~~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          143 EIPCEDNSYDFIWSQDAFLHS---PDKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             SCSSCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cCCCCCCCEeEEEecchhhhc---CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            988888899999998877766   44789999999999999999987543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.66  E-value=4.7e-16  Score=143.33  Aligned_cols=117  Identities=15%  Similarity=0.132  Sum_probs=102.0

Q ss_pred             HHHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709         189 YKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV  266 (319)
Q Consensus       189 ~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~  266 (319)
                      ..+.++..+. ..++.+|||+|||+|.++..+++....+|+|+|+++ +++.|++++..+++.++++++.+|+.+++++.
T Consensus       104 ~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  183 (312)
T 3vc1_A          104 QAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK  183 (312)
T ss_dssp             HHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred             HHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence            3456677776 777889999999999999999987234999999999 99999999999998779999999999988888


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ++||+|++..+.+++   + +..+++++.++|||||++++...
T Consensus       184 ~~fD~V~~~~~l~~~---~-~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          184 GAVTASWNNESTMYV---D-LHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             TCEEEEEEESCGGGS---C-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEeEEEECCchhhC---C-HHHHHHHHHHHcCCCcEEEEEEc
Confidence            899999998887766   2 78999999999999999997653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.65  E-value=4.6e-16  Score=138.60  Aligned_cols=114  Identities=23%  Similarity=0.305  Sum_probs=98.2

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      ...+...+...++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.++++..    ..+++++.+|+.+++++.++
T Consensus        33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~  108 (253)
T 3g5l_A           33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDA  108 (253)
T ss_dssp             HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTC
T ss_pred             HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCC
Confidence            445666667777899999999999999999998777999999999 9998887764    36899999999998887889


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ||+|++..+.+++   .++..+++++.++|||||.++++..+
T Consensus       109 fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~  147 (253)
T 3g5l_A          109 YNVVLSSLALHYI---ASFDDICKKVYINLKSSGSFIFSVEH  147 (253)
T ss_dssp             EEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9999998877766   56789999999999999999987544

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.65  E-value=1.2e-15  Score=132.37  Aligned_cols=120  Identities=15%  Similarity=0.148  Sum_probs=100.8

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      ......+...++..+...++.+|||+|||+|.++..+++. ..+|+|+|+++ +++.|+++++.+++.++++++.+|+.+
T Consensus        37 ~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  115 (204)
T 3njr_A           37 QITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA  115 (204)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG
T ss_pred             CCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh
Confidence            3445667777778888888899999999999999999998 55999999999 999999999999986689999999988


Q ss_pred             cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .....++||+|+++...       ... ++.++.++|||||+++++.++.
T Consensus       116 ~~~~~~~~D~v~~~~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~  157 (204)
T 3njr_A          116 ALADLPLPEAVFIGGGG-------SQA-LYDRLWEWLAPGTRIVANAVTL  157 (204)
T ss_dssp             GGTTSCCCSEEEECSCC-------CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred             hcccCCCCCEEEECCcc-------cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence            43333689999986632       344 8999999999999999987754

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.65  E-value=2.1e-15  Score=137.71  Aligned_cols=105  Identities=13%  Similarity=0.141  Sum_probs=86.8

Q ss_pred             cCCCcceeeccCCCchHH-HHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         199 LFNNKHVIDVGAGTGILS-IFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls-~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ..++.+|||||||+|.++ ..+++....+|+|+|+++ +++.|+++++..|+ ++++++++|+.+++  .++||+|++..
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~~a  196 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMVAA  196 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEECT
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEECC
Confidence            345589999999998765 555664455999999999 99999999999888 89999999998865  57999999754


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      .      ..+...+++++.++|||||++++......
T Consensus       197 ~------~~d~~~~l~el~r~LkPGG~Lvv~~~~~~  226 (298)
T 3fpf_A          197 L------AEPKRRVFRNIHRYVDTETRIIYRTYTGM  226 (298)
T ss_dssp             T------CSCHHHHHHHHHHHCCTTCEEEEEECCGG
T ss_pred             C------ccCHHHHHHHHHHHcCCCcEEEEEcCcch
Confidence            3      15678899999999999999998765443

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.64  E-value=9.8e-16  Score=139.18  Aligned_cols=112  Identities=15%  Similarity=0.136  Sum_probs=97.7

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc-CCCceeEEEecc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL-PVESVDIIISEW  276 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~-~~~~fD~Iis~~  276 (319)
                      ..++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|+++....+...+++++.+|+.+.++ +.++||+|++..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            356789999999999999998888777999999999 999999999888876789999999998876 568999999987


Q ss_pred             chhhh-cchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         277 MGYFL-LFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       277 ~~~~l-~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.++. .+......+++++.++|+|||.+++..++
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            76653 45677899999999999999999987655

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.64  E-value=5e-16  Score=135.12  Aligned_cols=116  Identities=21%  Similarity=0.286  Sum_probs=99.6

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      +.++..+...++.+|||+|||+|.++..+++.+  ..+|+|+|+|+ +++.+++++...++ .+++++.+|+.+++++.+
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~  105 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-KNVEVLKSEENKIPLPDN  105 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECBTTBCSSCSS
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEecccccCCCCCC
Confidence            345555566778899999999999999999864  45999999999 99999999988887 489999999999888888


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +||+|++..+.+++   .+...+++++.++|+|||.+++....
T Consensus       106 ~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          106 TVDFIFMAFTFHEL---SEPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             CEEEEEEESCGGGC---SSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CeeEEEeehhhhhc---CCHHHHHHHHHHHhCCCeEEEEEEec
Confidence            99999998887766   46788999999999999999987543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.64  E-value=6.5e-16  Score=136.84  Aligned_cols=114  Identities=15%  Similarity=0.264  Sum_probs=98.5

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV  269 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f  269 (319)
                      ..++..+...++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.+++++..++. .+++++.+|+++++++.++|
T Consensus        11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~f   88 (239)
T 1xxl_A           11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSF   88 (239)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTCE
T ss_pred             chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCC-CCeEEEecccccCCCCCCcE
Confidence            3444556677889999999999999999998865 999999999 99999999988887 58999999999988887899


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      |+|++..+.+++   .++..++.++.++|||||++++...
T Consensus        89 D~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           89 DIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             EEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEECCchhhc---cCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            999998777665   4678899999999999999998643

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.64  E-value=1.1e-15  Score=137.87  Aligned_cols=119  Identities=16%  Similarity=0.223  Sum_probs=102.4

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      +.+.+.+.......++.+|||+|||+|.++..+++.+ ..+|+|+|+++ +++.+++++...+. .+++++.+|+.++++
T Consensus        23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~  101 (276)
T 3mgg_A           23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPF  101 (276)
T ss_dssp             CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGCCS
T ss_pred             HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEEcccccCCC
Confidence            4455566666667788999999999999999999863 56999999999 99999999998887 589999999999888


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +.++||+|++..+.+++   .+...+++++.++|||||++++...
T Consensus       102 ~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          102 EDSSFDHIFVCFVLEHL---QSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             CTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCeeEEEEechhhhc---CCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            88899999998887766   4567899999999999999998654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.64  E-value=7.8e-16  Score=140.02  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=103.1

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC---CcEEEEEcCcc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD---SQIEVYHKLLE  260 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~---~~i~~i~~d~~  260 (319)
                      ..+.+.+.+...+...++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|+++....+..   .++.+..+|+.
T Consensus        41 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~  119 (293)
T 3thr_A           41 RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL  119 (293)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred             hHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence            4466677777777777788999999999999999999876 999999999 999998877544321   46889999998


Q ss_pred             ccc---cCCCceeEEEec-cchhhhcc----hhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         261 DVE---LPVESVDIIISE-WMGYFLLF----ETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       261 ~~~---~~~~~fD~Iis~-~~~~~l~~----~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +++   ++.++||+|++. .+++++..    ......+++++.++|||||+++++..+
T Consensus       120 ~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          120 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             GHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             hCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            877   677899999997 56666644    455899999999999999999987654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.64  E-value=6.1e-16  Score=138.12  Aligned_cols=120  Identities=20%  Similarity=0.247  Sum_probs=101.9

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      .....+.++..+...++.+|||+|||+|.++..+++....+|+|+|+|+ +++.++++....   .+++++.+|+.+.++
T Consensus        40 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~  116 (266)
T 3ujc_A           40 GLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEF  116 (266)
T ss_dssp             HHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCC
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCC
Confidence            4555677788888888899999999999999999986234999999999 999888766544   689999999999888


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +.++||+|++..+.+++. ..++..+++++.++|||||.+++...
T Consensus       117 ~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          117 PENNFDLIYSRDAILALS-LENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             CTTCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCcEEEEeHHHHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            889999999988777653 36788999999999999999998764

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.64  E-value=9.7e-16  Score=137.55  Aligned_cols=106  Identities=16%  Similarity=0.003  Sum_probs=87.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh----------cC------CCCcEEEEEcCcccc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK----------NK------YDSQIEVYHKLLEDV  262 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~----------~g------~~~~i~~i~~d~~~~  262 (319)
                      .++.+|||+|||+|..+..+++.|. +|+|+|+|+ +++.|++....          .+      ...+++++++|+.++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4568999999999999999999987 999999999 99998765431          00      125899999999998


Q ss_pred             ccCC-CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         263 ELPV-ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       263 ~~~~-~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +.+. ++||+|++..+++++. ......+++++.++|||||++++.
T Consensus       146 ~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          146 PRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             GGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEE
Confidence            7654 7999999987777664 456788999999999999999643

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.64  E-value=1.1e-15  Score=138.69  Aligned_cols=105  Identities=21%  Similarity=0.269  Sum_probs=93.2

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEEEeccchh
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDIIISEWMGY  279 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~Iis~~~~~  279 (319)
                      +.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|++++...++.++++++.+|+.+++ ++.++||+|++..+.+
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  147 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE  147 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred             CCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence            57999999999999999999865 999999999 99999999999888789999999999887 6678999999988877


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++   .++..+++++.++|||||++++...+
T Consensus       148 ~~---~~~~~~l~~~~~~LkpgG~l~~~~~~  175 (285)
T 4htf_A          148 WV---ADPRSVLQTLWSVLRPGGVLSLMFYN  175 (285)
T ss_dssp             GC---SCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cc---cCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence            66   45688999999999999999987653

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.63  E-value=1.9e-15  Score=129.04  Aligned_cols=111  Identities=22%  Similarity=0.259  Sum_probs=94.5

Q ss_pred             HhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI  271 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~  271 (319)
                      +...+...++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.+++++..++. .+++++.+|+.+.++ .++||+
T Consensus        24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~D~  100 (199)
T 2xvm_A           24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTF-DRQYDF  100 (199)
T ss_dssp             HHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCC-CCCEEE
T ss_pred             HHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCC-CCCceE
Confidence            33444555678999999999999999999865 999999999 99999999988877 579999999998877 689999


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      |++..+.+++. ......+++++.++|+|||.+++.
T Consensus       101 v~~~~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~  135 (199)
T 2xvm_A          101 ILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIV  135 (199)
T ss_dssp             EEEESCGGGSC-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEE
Confidence            99988877753 357789999999999999997753

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.63  E-value=1.8e-15  Score=137.30  Aligned_cols=120  Identities=21%  Similarity=0.175  Sum_probs=103.1

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ....+.++..+...++.+|||+|||+|.++..+++ .+. +|+|+|+|+ +++.+++++...+..++++++.+|+.+++ 
T Consensus        50 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-  127 (287)
T 1kpg_A           50 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-  127 (287)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-
T ss_pred             HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-
Confidence            55667778888888889999999999999999985 565 999999999 99999999998888789999999997654 


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                        ++||+|++..+.+++.. ..+..+++++.++|||||.+++...+.
T Consensus       128 --~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          128 --EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             --CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             --CCeeEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence              78999999887776533 567889999999999999999876543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.63  E-value=1.2e-15  Score=129.40  Aligned_cols=110  Identities=16%  Similarity=0.097  Sum_probs=88.4

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEEEecc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDIIISEW  276 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~Iis~~  276 (319)
                      ..++.+|||+|||+|.++..+++. ..+|+|+|+|+ +++.|+++++.+++ ++++++.++...+. ++.++||+|+++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~   97 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNL   97 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence            346789999999999999999998 55999999999 99999999999888 78999998887753 3457899999874


Q ss_pred             chhh------hcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         277 MGYF------LLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       277 ~~~~------l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .+..      .........++.++.++|||||.+++...+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            2211      012345667899999999999999976543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.63  E-value=2.6e-15  Score=129.56  Aligned_cols=119  Identities=23%  Similarity=0.287  Sum_probs=101.7

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ..+.+...++..+...++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.+++++..+++ ++++++.+|+.+.
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  102 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEG  102 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhh
Confidence            456677778888888888999999999999999999974 56999999999 99999999998888 7899999999765


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ....++||+|+++...+      ....+++++.++|+|||++++...+
T Consensus       103 ~~~~~~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          103 LDDLPDPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             CTTSCCCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             hhcCCCCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecc
Confidence            44447899999877542      5678999999999999999987654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.63  E-value=1.4e-15  Score=127.82  Aligned_cols=119  Identities=13%  Similarity=0.114  Sum_probs=98.5

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      ...+.+...++..+...++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.+++++..++..+++ ++.+|..+
T Consensus         8 ~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~   86 (178)
T 3hm2_A            8 LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR   86 (178)
T ss_dssp             SHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred             ccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence            455677788888888888899999999999999999986 456999999999 999999999999886688 88888854


Q ss_pred             cccCC--CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         262 VELPV--ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       262 ~~~~~--~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                       .++.  ++||+|+++...++       ..+++++.++|+|||++++...+.
T Consensus        87 -~~~~~~~~~D~i~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~  130 (178)
T 3hm2_A           87 -AFDDVPDNPDVIFIGGGLTA-------PGVFAAAWKRLPVGGRLVANAVTV  130 (178)
T ss_dssp             -GGGGCCSCCSEEEECC-TTC-------TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred             -hhhccCCCCCEEEECCcccH-------HHHHHHHHHhcCCCCEEEEEeecc
Confidence             3333  78999998776543       568889999999999999877653

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.62  E-value=1.5e-15  Score=133.93  Aligned_cols=119  Identities=14%  Similarity=0.169  Sum_probs=98.9

Q ss_pred             HHHHHHhcccccC--CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         188 SYKSAILNNKSLF--NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       188 ~~~~~i~~~l~~~--~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      .+.+.+...+...  ++.+|||+|||+|.++..+++.+. +++|+|+|+ +++.++++....+.  +++++.+|+.+.++
T Consensus        22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~   98 (246)
T 1y8c_A           22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCc
Confidence            3444444444332  668999999999999999999865 899999999 99999999887765  78999999998877


Q ss_pred             CCCceeEEEecc-chhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         265 PVESVDIIISEW-MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       265 ~~~~fD~Iis~~-~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      + ++||+|++.. +.+++.....+..+++++.++|+|||.++++..+
T Consensus        99 ~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (246)
T 1y8c_A           99 N-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             S-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             c-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            7 8999999987 7777766678899999999999999999986543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.62  E-value=1.1e-15  Score=135.93  Aligned_cols=118  Identities=15%  Similarity=0.173  Sum_probs=99.2

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV  266 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~  266 (319)
                      .....++..+...++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.++++....   .+++++.+|+.+++++.
T Consensus        80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~  156 (254)
T 1xtp_A           80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCS
T ss_pred             HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCC
Confidence            33455566666667889999999999999999887666899999999 999998877554   57999999999988777


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ++||+|++..+.+++.. ..+..+++++.++|||||++++...
T Consensus       157 ~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          157 NTYDLIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             SCEEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCeEEEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence            89999999888776533 5678999999999999999998764

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.62  E-value=4.8e-16  Score=139.95  Aligned_cols=108  Identities=19%  Similarity=0.229  Sum_probs=90.0

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      +.+.+++....+  .+.+|||+|||+|.++..+++.+. +|+|+|+|+ |++.|++       ..+++++++++++++++
T Consensus        27 ~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~~~~   96 (257)
T 4hg2_A           27 RALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDTGLP   96 (257)
T ss_dssp             HHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCC-------CTTEEEEECCTTCCCCC
T ss_pred             HHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhh-------cCCceeehhhhhhhccc
Confidence            556666665543  346899999999999999999865 999999999 8876642       25899999999999999


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +++||+|++..++||+    +.+.++.++.|+|||||+|++..
T Consensus        97 ~~sfD~v~~~~~~h~~----~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A           97 PASVDVAIAAQAMHWF----DLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             SSCEEEEEECSCCTTC----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcccEEEEeeehhHh----hHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999999998887775    35678999999999999998644

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.62  E-value=2.3e-15  Score=137.73  Aligned_cols=115  Identities=15%  Similarity=0.177  Sum_probs=96.3

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHhc-CCCCcEEEEEcCcccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ--AGAAKVFAIEKSD-IAYETIDIIRKN-KYDSQIEVYHKLLEDV  262 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~--~g~~~V~gvD~s~-~i~~a~~~~~~~-g~~~~i~~i~~d~~~~  262 (319)
                      ..+.+.+..... .++.+|||+|||+|.++..+++  .+..+|+|+|+|+ +++.|++++... +...+++++++|++++
T Consensus        23 ~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~  101 (299)
T 3g5t_A           23 SDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF  101 (299)
T ss_dssp             HHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC
T ss_pred             HHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC
Confidence            344455544433 4678999999999999999997  3567999999999 999999998886 4457999999999998


Q ss_pred             ccCC------CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         263 ELPV------ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       263 ~~~~------~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +++.      ++||+|++..+.+++    ++..++.++.++|+|||.+++
T Consensus       102 ~~~~~~~~~~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          102 KFLGADSVDKQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             GGGCTTTTTSSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred             CccccccccCCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence            8776      799999998887776    678899999999999999987

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.62  E-value=1.1e-15  Score=140.39  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=97.7

Q ss_pred             ccCCCcceeeccCCCchHHHHHH--HcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAA--QAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS  274 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la--~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis  274 (319)
                      ...++.+|||+|||+|.++..++  ..+..+|+|+|+|+ +++.+++++...+..++++++.+|+.+++++ ++||+|++
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~  193 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTS  193 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEE
Confidence            34567899999999999999885  34566999999999 9999999999988877899999999998877 89999999


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.+.+++........+++++.++|||||+++++..+
T Consensus       194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            988887766666677999999999999999987643

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.62  E-value=1.8e-15  Score=135.88  Aligned_cols=112  Identities=21%  Similarity=0.280  Sum_probs=93.2

Q ss_pred             cccC-CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEE
Q psy8709         197 KSLF-NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDII  272 (319)
Q Consensus       197 l~~~-~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~I  272 (319)
                      .... ++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|++++..+++.++++++++|+.+..  ++.++||+|
T Consensus        44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I  123 (259)
T 3lpm_A           44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV  123 (259)
T ss_dssp             CCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred             hcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence            3455 6789999999999999999998666999999999 99999999999999888999999998875  446899999


Q ss_pred             Eeccchhhhcc-----------------hhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         273 ISEWMGYFLLF-----------------ETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       273 is~~~~~~l~~-----------------~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ++|++++....                 ...+..++..+.++|+|||++++..
T Consensus       124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  176 (259)
T 3lpm_A          124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH  176 (259)
T ss_dssp             EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence            99988654300                 1345789999999999999999854

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.62  E-value=1.3e-15  Score=139.24  Aligned_cols=111  Identities=14%  Similarity=0.224  Sum_probs=90.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCC-----------------------------
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKY-----------------------------  248 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~-----------------------------  248 (319)
                      .++.+|||||||+|.++..+++. +..+|+|+|+++ +++.|++++...+.                             
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            36789999999999999999985 566999999999 99999987665432                             


Q ss_pred             ----------------------------CCcEEEEEcCccccc-----cCCCceeEEEeccchhhhc---chhhHHHHHH
Q psy8709         249 ----------------------------DSQIEVYHKLLEDVE-----LPVESVDIIISEWMGYFLL---FETMIDSVID  292 (319)
Q Consensus       249 ----------------------------~~~i~~i~~d~~~~~-----~~~~~fD~Iis~~~~~~l~---~~~~~~~~l~  292 (319)
                                                  +.+++|+++|+....     +..++||+|+|..+.+|++   ....+..+++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                        258999999997644     3568999999998887764   5567899999


Q ss_pred             HHhcccCCCcEEEeecCc
Q psy8709         293 ARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       293 ~~~r~LkpgG~li~~~~t  310 (319)
                      +++++|+|||+|++....
T Consensus       205 ~~~~~LkpGG~lil~~~~  222 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQP  222 (292)
T ss_dssp             HHHHHEEEEEEEEEECCC
T ss_pred             HHHHHhCCCcEEEEecCC
Confidence            999999999999987544

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.61  E-value=4.4e-15  Score=136.91  Aligned_cols=120  Identities=17%  Similarity=0.105  Sum_probs=103.7

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ....+.++..+...++.+|||+|||+|.++..+++. +. +|+|+|+|+ +++.+++++...++.++++++.+|+.+++ 
T Consensus        76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-  153 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-  153 (318)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-
Confidence            556677778888888899999999999999999986 65 999999999 99999999998888778999999998764 


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                        ++||+|++..+++++.. .++..+++++.++|||||.+++...+.
T Consensus       154 --~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          154 --EPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             --CCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             --CCcCEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence              78999999888776533 567899999999999999999876543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.61  E-value=3.4e-15  Score=130.26  Aligned_cols=118  Identities=16%  Similarity=0.215  Sum_probs=97.8

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      +.+.+.+...+.  ++.+|||+|||+|.++..+++.+. +++|+|+|+ +++.++++...++  .+++++.+|+.+.+++
T Consensus        26 ~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~  100 (227)
T 1ve3_A           26 ETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFE  100 (227)
T ss_dssp             HHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSC
T ss_pred             HHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCC
Confidence            445555555543  367999999999999999999866 999999999 9999999988776  5899999999988777


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .++||+|+++.+.++ .+......+++++.++|+|||.+++...+
T Consensus       101 ~~~~D~v~~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          101 DKTFDYVIFIDSIVH-FEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             TTCEEEEEEESCGGG-CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEcCchHh-CCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            789999999877433 34467789999999999999999977654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.61  E-value=4e-15  Score=132.27  Aligned_cols=116  Identities=16%  Similarity=0.251  Sum_probs=94.7

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV  269 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f  269 (319)
                      ..++......++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++....+.  +++++.+|+.+.+++ ++|
T Consensus        31 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~f  106 (252)
T 1wzn_A           31 EEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEF  106 (252)
T ss_dssp             HHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCE
T ss_pred             HHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC-CCc
Confidence            3334444445668999999999999999999865 999999999 99999999888765  799999999987765 689


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      |+|++...............+++++.++|+|||.++++..+
T Consensus       107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            99998643333345567889999999999999999987654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.61  E-value=3.3e-15  Score=131.30  Aligned_cols=118  Identities=19%  Similarity=0.254  Sum_probs=96.0

Q ss_pred             HHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         188 SYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       188 ~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      .+.+.+...+. ..++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.+++++...+   +++++.+|+.+.++
T Consensus        30 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~  106 (234)
T 3dtn_A           30 DFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF  106 (234)
T ss_dssp             HHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC
T ss_pred             HHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC
Confidence            33345555554 456789999999999999999986 356999999999 9999988875543   89999999999887


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      + ++||+|++..+.+++ .......+++++.++|||||.+++....
T Consensus       107 ~-~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~  150 (234)
T 3dtn_A          107 E-EKYDMVVSALSIHHL-EDEDKKELYKRSYSILKESGIFINADLV  150 (234)
T ss_dssp             C-SCEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             C-CCceEEEEeCccccC-CHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            7 899999999888776 3344557999999999999999987644

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.61  E-value=3.8e-15  Score=132.84  Aligned_cols=104  Identities=20%  Similarity=0.262  Sum_probs=90.5

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ...++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.+++++ .. ...+++++.+|+.+++++.++||+|++..
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~~-~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  112 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-AG-VDRKVQVVQADARAIPLPDESVHGVIVVH  112 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-TT-SCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-hc-cCCceEEEEcccccCCCCCCCeeEEEECC
Confidence            456678999999999999999999854 999999999 999999887 32 33689999999998888778999999988


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +.+++   .+...++.++.++|+|||.+++.
T Consensus       113 ~l~~~---~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          113 LWHLV---PDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             CGGGC---TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhc---CCHHHHHHHHHHHCCCCcEEEEE
Confidence            87776   46788999999999999999986

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.61  E-value=1.9e-15  Score=139.23  Aligned_cols=110  Identities=12%  Similarity=0.095  Sum_probs=86.2

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCC-----cEEEEEcCc------ccc--ccCC
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDS-----QIEVYHKLL------EDV--ELPV  266 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~-----~i~~i~~d~------~~~--~~~~  266 (319)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+ |++.|+++....+...     ++++.+.++      +++  +++.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            4679999999999877666666666999999999 9999999887655311     367888887      333  2455


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++||+|+|..+.|++........++++++++|||||+|++++++
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~  171 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD  171 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            79999999887776544345689999999999999999987764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.60  E-value=3e-15  Score=131.03  Aligned_cols=109  Identities=17%  Similarity=0.183  Sum_probs=95.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC----CCcEEEEEcCccccccCCCceeEEEe
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY----DSQIEVYHKLLEDVELPVESVDIIIS  274 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~----~~~i~~i~~d~~~~~~~~~~fD~Iis  274 (319)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.+++++...+.    ..++.++.+|+..++++.++||+|++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            3568999999999999999999865 999999999 99999998877765    24689999999998887889999999


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ..+.+++........+++++.++|+|||++++...
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            88888776656666899999999999999998754

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.60  E-value=3.7e-15  Score=135.31  Aligned_cols=106  Identities=18%  Similarity=0.209  Sum_probs=93.0

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      +...++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.+++++..++.  +++++.+|+.+.+. .++||+|+++
T Consensus       116 ~~~~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~~  191 (286)
T 3m70_A          116 AKIISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVST  191 (286)
T ss_dssp             HHHSCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEEC
T ss_pred             hhccCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEEc
Confidence            3344678999999999999999999976 999999999 99999999998887  89999999998776 5899999999


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .+++++. ......+++++.++|+|||.+++.
T Consensus       192 ~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          192 VVFMFLN-RERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             SSGGGSC-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cchhhCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9888763 466789999999999999997753

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.60  E-value=5.1e-15  Score=125.44  Aligned_cols=120  Identities=18%  Similarity=0.200  Sum_probs=100.3

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCC-cEEEEEcCccccccC
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDS-QIEVYHKLLEDVELP  265 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~-~i~~i~~d~~~~~~~  265 (319)
                      ...+.++..+...++.+|||+|||+|.++..+++. ..+++|+|+++ +++.+++++..++..+ +++++.+|+.+. .+
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~  116 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VK  116 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CT
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-cc
Confidence            45666666777778889999999999999999988 55999999999 9999999999888743 499999999874 34


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .++||+|++++++++  .......+++++.++|+|||.+++...+.
T Consensus       117 ~~~~D~v~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          117 DRKYNKIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             TSCEEEEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             cCCceEEEECCCccc--chhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            578999999887653  23567889999999999999999887654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.60  E-value=1.3e-15  Score=134.68  Aligned_cols=109  Identities=22%  Similarity=0.233  Sum_probs=89.1

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEe-
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIIS-  274 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis-  274 (319)
                      ..++.+|||+|||+|.++..+++.+..+|+|+|+|+ |++.|+++....+  .+++++.+|+.++  ++++++||+|++ 
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d  135 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence            346689999999999999999887666999999999 9999999887766  5899999999988  777789999998 


Q ss_pred             ccch-hhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         275 EWMG-YFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       275 ~~~~-~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .... ....+......++++++++|||||+|++...
T Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            3321 1112334566889999999999999996544

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.60  E-value=3.5e-15  Score=128.85  Aligned_cols=119  Identities=17%  Similarity=0.202  Sum_probs=97.2

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+...+  .++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.++++...   ..+++++.+|+.+++++
T Consensus        30 ~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~~  104 (215)
T 2pxx_A           30 SSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDFP  104 (215)
T ss_dssp             HHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCSC
T ss_pred             HHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCCC
Confidence            34555555543  55689999999999999999998766999999999 99999887654   25899999999988877


Q ss_pred             CCceeEEEeccchhhhc------------chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         266 VESVDIIISEWMGYFLL------------FETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~------------~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .++||+|+++.+++++.            +......+++++.++|+|||.+++....
T Consensus       105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            78999999988776553            2356789999999999999999976654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.60  E-value=3e-15  Score=129.12  Aligned_cols=108  Identities=25%  Similarity=0.370  Sum_probs=90.0

Q ss_pred             cCCCcceeeccCCCchHHH-HHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         199 LFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~-~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ..++.+|||+|||+|.++. .+++.+. +|+|+|+|+ +++.+++++...+  .+++++.+|+.+.+++.++||+|++..
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~   97 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYG   97 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcC
Confidence            4456899999999999854 4445554 999999999 9999999887766  378999999999888778999999987


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.+++. ......+++++.++|||||.++++..+
T Consensus        98 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           98 TIFHMR-KNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             CGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            766653 467889999999999999999987654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.59  E-value=4e-15  Score=127.46  Aligned_cols=112  Identities=12%  Similarity=0.125  Sum_probs=92.5

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEEE
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDIII  273 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~Ii  273 (319)
                      ...++.+|||+|||+|.++..+++.  +..+|+|+|+++ +++.|++++..+++.++++++.+|+.++. ...++||+|+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            3456789999999999999999986  456999999999 99999999999888779999999998875 4457899999


Q ss_pred             eccchh------hhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         274 SEWMGY------FLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       274 s~~~~~------~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ++.++.      ..........++.++.++|||||++++...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            986541      112233556799999999999999997753

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.59  E-value=2.7e-15  Score=137.22  Aligned_cols=121  Identities=14%  Similarity=0.085  Sum_probs=95.6

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC--CcEEEEEcCccccccC
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD--SQIEVYHKLLEDVELP  265 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~--~~i~~i~~d~~~~~~~  265 (319)
                      ....++..+...+ .+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|++++...+..  .+++++++|+.++++ 
T Consensus        71 ~~~~~~~~~~~~~-~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-  147 (299)
T 3g2m_A           71 EAREFATRTGPVS-GPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-  147 (299)
T ss_dssp             HHHHHHHHHCCCC-SCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-
T ss_pred             HHHHHHHhhCCCC-CcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-
Confidence            3444444444333 4999999999999999999865 899999999 999999998876632  589999999999877 


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      .++||+|++.....+.........+++++.++|||||+|+++..+..
T Consensus       148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence            48999999653323334445678999999999999999998776543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.59  E-value=2.5e-15  Score=133.06  Aligned_cols=120  Identities=14%  Similarity=0.180  Sum_probs=95.2

Q ss_pred             HHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         188 SYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       188 ~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      .+.+.+...+. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.++++....+. .++.++.+|+.+++++
T Consensus        65 ~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~  143 (241)
T 2ex4_A           65 KFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPE  143 (241)
T ss_dssp             HHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCC
T ss_pred             HHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC-ceEEEEEcChhhcCCC
Confidence            33344443332 235789999999999999998887666999999999 99999988876642 5799999999988877


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .++||+|++..+.+++.. .....+++++.++|+|||++++...
T Consensus       144 ~~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          144 PDSYDVIWIQWVIGHLTD-QHLAEFLRRCKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             SSCEEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCEEEEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            678999999887776533 3467899999999999999998654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.59  E-value=1.3e-15  Score=137.12  Aligned_cols=111  Identities=15%  Similarity=0.135  Sum_probs=88.8

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC----------------------------
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY----------------------------  248 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~----------------------------  248 (319)
                      ...++.+|||+|||+|.++..++..++.+|+|+|+|+ |++.|+++++.+..                            
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            4556789999999999998887777777899999999 99999987765421                            


Q ss_pred             CCcEE-EEEcCcccc-cc---CCCceeEEEeccchhhh-cchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         249 DSQIE-VYHKLLEDV-EL---PVESVDIIISEWMGYFL-LFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       249 ~~~i~-~i~~d~~~~-~~---~~~~fD~Iis~~~~~~l-~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ..++. ++.+|+.+. ++   ..++||+|++..+.+++ .+.+++..++++++++|||||+|+++.
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            01344 889999874 22   24689999999888875 344677889999999999999999875

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.59  E-value=7.7e-15  Score=130.70  Aligned_cols=113  Identities=15%  Similarity=0.150  Sum_probs=96.0

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ......++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.++++      ..+++++.+|+.+++ 
T Consensus        19 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~-   91 (259)
T 2p35_A           19 TRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK-   91 (259)
T ss_dssp             GHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC-
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC-
Confidence            444556777777778899999999999999999886 345999999999 99888876      257899999999887 


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +.++||+|+++.+.+++   .+...++.++.++|+|||.+++...
T Consensus        92 ~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           92 PAQKADLLYANAVFQWV---PDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             CSSCEEEEEEESCGGGS---TTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             ccCCcCEEEEeCchhhC---CCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            66899999998887776   5678999999999999999998764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.58  E-value=3.8e-15  Score=131.31  Aligned_cols=112  Identities=18%  Similarity=0.248  Sum_probs=93.3

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCcee
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVD  270 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD  270 (319)
                      .+...+...++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.++++...    .+++++.+|+.+.+++.++||
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD  109 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFD  109 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEE
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCce
Confidence            3444555567789999999999999999998766999999999 88888765432    479999999998887778999


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +|++..+.+++   .+...+++++.++|+|||.+++...+
T Consensus       110 ~v~~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          110 LAYSSLALHYV---EDVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             EEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEecccccc---chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            99998776665   46789999999999999999987643

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.58  E-value=6.3e-15  Score=135.72  Aligned_cols=110  Identities=15%  Similarity=0.094  Sum_probs=92.7

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcC------CCCcEEEEEcCccccc----cC--CC
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNK------YDSQIEVYHKLLEDVE----LP--VE  267 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g------~~~~i~~i~~d~~~~~----~~--~~  267 (319)
                      ++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.++++....+      ...+++++++|+.+.+    ++  .+
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            5679999999999999999987667999999999 9999998876542      2257999999998875    43  35


Q ss_pred             ceeEEEeccchhhh-cchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         268 SVDIIISEWMGYFL-LFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       268 ~fD~Iis~~~~~~l-~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +||+|++..+.||+ .+......++.++.++|||||.+++++..
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            89999999888877 56677889999999999999999987664

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.58  E-value=2.6e-15  Score=130.64  Aligned_cols=109  Identities=22%  Similarity=0.259  Sum_probs=89.6

Q ss_pred             HhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI  271 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~  271 (319)
                      ++..+...++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.++++..     .+++++.+|+.+++++ ++||+
T Consensus        37 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~  109 (220)
T 3hnr_A           37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDT  109 (220)
T ss_dssp             HHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSE
T ss_pred             HHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEE
Confidence            33334445678999999999999999999865 999999999 9988887653     4789999999998877 89999


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      |++..+.+++.. .....+++++.++|||||.+++...
T Consensus       110 v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~  146 (220)
T 3hnr_A          110 IVSTYAFHHLTD-DEKNVAIAKYSQLLNKGGKIVFADT  146 (220)
T ss_dssp             EEEESCGGGSCH-HHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEECcchhcCCh-HHHHHHHHHHHHhcCCCCEEEEEec
Confidence            999888777633 2334589999999999999998753

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.58  E-value=2e-15  Score=133.92  Aligned_cols=107  Identities=22%  Similarity=0.244  Sum_probs=88.9

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEecc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIISEW  276 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis~~  276 (319)
                      .+|.+|||||||+|..+..+++.+..+|+|||+|+ +++.|+++....+  .++.++.+++.+.  .++.++||.|+.+.
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~FD~i~~D~  136 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccccCCceEEEee
Confidence            46789999999999999999987656999999999 9999999887766  4789999998765  46678999998764


Q ss_pred             c--hhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         277 M--GYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       277 ~--~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +  .+.+.+..+...++.++.|+|||||+|++..
T Consensus       137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            3  2334455678899999999999999998753

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.58  E-value=9.8e-16  Score=127.70  Aligned_cols=123  Identities=13%  Similarity=0.078  Sum_probs=95.5

Q ss_pred             CcccHHHHHHHHhcccccC--CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC
Q psy8709         182 TPIRTESYKSAILNNKSLF--NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL  258 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~--~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d  258 (319)
                      .++..+.+.+.+...+...  ++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.+++++..+++  +++++++|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d   96 (171)
T 1ws6_A           20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALP   96 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSC
T ss_pred             CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEecc
Confidence            4555667777776665542  678999999999999999999876 599999999 99999999988877  89999999


Q ss_pred             cccc-c-cC--CCceeEEEeccchhhhcchhhHHHHHHHHh--cccCCCcEEEeecCcce
Q psy8709         259 LEDV-E-LP--VESVDIIISEWMGYFLLFETMIDSVIDARN--RFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       259 ~~~~-~-~~--~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~t~~  312 (319)
                      +.+. + .+  .++||+|+++++++ -    ....++..+.  ++|+|||.+++++.+..
T Consensus        97 ~~~~~~~~~~~~~~~D~i~~~~~~~-~----~~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A           97 VEVFLPEAKAQGERFTVAFMAPPYA-M----DLAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCTT-S----CTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             HHHHHHhhhccCCceEEEEECCCCc-h----hHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            9774 2 11  24799999998755 2    2233444444  99999999998876543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.58  E-value=3.9e-15  Score=131.24  Aligned_cols=101  Identities=14%  Similarity=0.129  Sum_probs=86.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|+++...     +++++.+|+.+. .+.++||+|++..+.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~~~fD~v~~~~~l  113 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLPRRYDNIVLTHVL  113 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCSSCEEEEEEESCG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcCCcccEEEEhhHH
Confidence            4667999999999999999999866 899999999 99888876532     799999999887 456899999998877


Q ss_pred             hhhcchhhHHHHHHHHh-cccCCCcEEEeecCc
Q psy8709         279 YFLLFETMIDSVIDARN-RFLKPDGVVCPNRFT  310 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~-r~LkpgG~li~~~~t  310 (319)
                      +++   .++..+++++. ++|||||++++...+
T Consensus       114 ~~~---~~~~~~l~~~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A          114 EHI---DDPVALLKRINDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             GGC---SSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             Hhh---cCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            766   45689999999 999999999987654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.58  E-value=9.9e-15  Score=123.43  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=101.4

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      +..+.+...++..+...++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.+++++..++...++.++.+|+.+ 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-   93 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-   93 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-
Confidence            5567778888888888888999999999999999999987 6999999999 999999999988876789999999877 


Q ss_pred             ccCC-CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         263 ELPV-ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       263 ~~~~-~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .++. ++||+|++..+.+      .+..++..+.++|+|||.+++..++
T Consensus        94 ~~~~~~~~D~v~~~~~~~------~~~~~l~~~~~~l~~gG~l~~~~~~  136 (192)
T 1l3i_A           94 ALCKIPDIDIAVVGGSGG------ELQEILRIIKDKLKPGGRIIVTAIL  136 (192)
T ss_dssp             HHTTSCCEEEEEESCCTT------CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             hcccCCCCCEEEECCchH------HHHHHHHHHHHhcCCCcEEEEEecC
Confidence            3332 5899999876542      3478899999999999999987654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.57  E-value=2e-15  Score=135.55  Aligned_cols=116  Identities=27%  Similarity=0.359  Sum_probs=95.9

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      ......+.+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+ +++.++++       .+++++.+|+++
T Consensus        16 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~~~~d~~~   87 (261)
T 3ege_A           16 RVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVH-------PQVEWFTGYAEN   87 (261)
T ss_dssp             BCCCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCC-------TTEEEECCCTTS
T ss_pred             ccccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhc-------cCCEEEECchhh
Confidence            33445677778888877888999999999999999999865 4999999999 77765432       289999999999


Q ss_pred             cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++++.++||+|++..+.+++   .++..+++++.++|| ||.+++....
T Consensus        88 ~~~~~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           88 LALPDKSVDGVISILAIHHF---SHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             CCSCTTCBSEEEEESCGGGC---SSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             CCCCCCCEeEEEEcchHhhc---cCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            88888899999998877666   677899999999999 9977755443

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.57  E-value=6.6e-15  Score=133.82  Aligned_cols=104  Identities=24%  Similarity=0.206  Sum_probs=90.4

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|+++++.+++.++++++++|+.+... .++||+|+++++.
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~  202 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV  202 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCch
Confidence            45789999999999999999998766899999999 999999999999997779999999998765 5789999998763


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ..       ..++.++.++|+|||++++..++.
T Consensus       203 ~~-------~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          203 RT-------HEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             SG-------GGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             hH-------HHHHHHHHHHCCCCeEEEEEEeec
Confidence            22       456778889999999999877763

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.57  E-value=1.1e-14  Score=126.09  Aligned_cols=114  Identities=13%  Similarity=0.084  Sum_probs=95.6

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ...+...+...+...++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.+++++...+. .+++++.+|+.+...
T Consensus        62 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~  139 (210)
T 3lbf_A           62 QPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDL-HNVSTRHGDGWQGWQ  139 (210)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCG
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCC-CceEEEECCcccCCc
Confidence            34556666777777888999999999999999999984 5999999999 99999999998887 489999999988665


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.++||+|+++...+++..         .+.++|||||++++...+
T Consensus       140 ~~~~~D~i~~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          140 ARAPFDAIIVTAAPPEIPT---------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GGCCEEEEEESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred             cCCCccEEEEccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence            5679999999876655432         467899999999987765

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.57  E-value=7.4e-15  Score=127.16  Aligned_cols=104  Identities=17%  Similarity=0.135  Sum_probs=88.3

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.+++    .+. .+++++.+|+.+. ++.++||+|++..+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~~~~D~v~~~~~  116 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPDRQWDAVFFAHW  116 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCSSCEEEEEEESC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCCCceeEEEEech
Confidence            45667999999999999999999865 999999999 8888876    444 6899999999988 66789999999888


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .+++.. .....+++++.++|+|||.+++...+
T Consensus       117 l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          117 LAHVPD-DRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhcCCH-HHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            777633 44688999999999999999987654

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.57  E-value=1.2e-14  Score=122.03  Aligned_cols=117  Identities=21%  Similarity=0.248  Sum_probs=99.9

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      ++..+.+.+.+...+...++.+|||+|||+|.++..+++ +..+++|+|+++ +++.+++++..+++ ++++++.+|+.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~   94 (183)
T 2yxd_A           17 PITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED   94 (183)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH
T ss_pred             CcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc
Confidence            455677788888888888889999999999999999999 566999999999 99999999999887 689999999987


Q ss_pred             cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                       +++.++||+|+++.+       .....++.++.++  |||.+++..++.
T Consensus        95 -~~~~~~~D~i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~~~~~  134 (183)
T 2yxd_A           95 -VLDKLEFNKAFIGGT-------KNIEKIIEILDKK--KINHIVANTIVL  134 (183)
T ss_dssp             -HGGGCCCSEEEECSC-------SCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred             -cccCCCCcEEEECCc-------ccHHHHHHHHhhC--CCCEEEEEeccc
Confidence             566578999998776       3457788888888  999999887543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.57  E-value=1.2e-14  Score=127.45  Aligned_cols=108  Identities=19%  Similarity=0.192  Sum_probs=88.2

Q ss_pred             cCCCcceeeccCC-CchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-ccCCCceeEEEec
Q psy8709         199 LFNNKHVIDVGAG-TGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-ELPVESVDIIISE  275 (319)
Q Consensus       199 ~~~~~~VLDiGcG-tG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~~~~~~fD~Iis~  275 (319)
                      ..++.+|||+||| +|.++..+++....+|+|+|+++ +++.|++++..++.  +++++.+|+... +++.++||+|+++
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~n  130 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSA  130 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEEC
Confidence            4567899999999 99999999987445999999999 99999999999887  899999997544 3455899999999


Q ss_pred             cchhhhcc----------------hhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         276 WMGYFLLF----------------ETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       276 ~~~~~l~~----------------~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ++++....                ...+..++.++.++|||||++++..
T Consensus       131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (230)
T 3evz_A          131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL  179 (230)
T ss_dssp             CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            88654321                1224789999999999999999754

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.57  E-value=4.6e-15  Score=127.60  Aligned_cols=101  Identities=14%  Similarity=0.149  Sum_probs=87.9

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF  280 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~  280 (319)
                      +.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++.      .+++++.+|+.+++++.++||+|++..+.++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  114 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH  114 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTT
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhc
Confidence            68999999999999999999866 999999999 998888762      4789999999998888889999999887776


Q ss_pred             hcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         281 LLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       281 l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +. ..++..+++++.++|+|||.+++....
T Consensus       115 ~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~  143 (203)
T 3h2b_A          115 MG-PGELPDALVALRMAVEDGGGLLMSFFS  143 (203)
T ss_dssp             CC-TTTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CC-HHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            53 347789999999999999999987643

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.57  E-value=5.1e-15  Score=130.43  Aligned_cols=105  Identities=14%  Similarity=0.091  Sum_probs=90.0

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF  280 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~  280 (319)
                      +.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++....+...+++++.+|+.+.+. .++||+|++..+.++
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-TELFDLIFDYVFFCA  144 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC-SSCEEEEEEESSTTT
T ss_pred             CCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC-CCCeeEEEEChhhhc
Confidence            35999999999999999988655 899999999 999999998776555789999999998764 469999999888776


Q ss_pred             hcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         281 LLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       281 l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +. ......+++++.++|||||++++...
T Consensus       145 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          145 IE-PEMRPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             SC-GGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CC-HHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence            63 35788999999999999999997544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.56  E-value=6.6e-15  Score=132.52  Aligned_cols=114  Identities=18%  Similarity=0.113  Sum_probs=91.8

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHh---cCCCCcEEEEEcCccccc-------c
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRK---NKYDSQIEVYHKLLEDVE-------L  264 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~---~g~~~~i~~i~~d~~~~~-------~  264 (319)
                      +...++.+|||+|||+|.++..+++.. ..+|+|+|+++ +++.|++++..   +++.++++++++|+.+..       +
T Consensus        32 ~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~  111 (260)
T 2ozv_A           32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL  111 (260)
T ss_dssp             CCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC
T ss_pred             hcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc
Confidence            345567899999999999999999864 46999999999 99999999988   888778999999998872       4


Q ss_pred             CCCceeEEEeccchhhhc---------------chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         265 PVESVDIIISEWMGYFLL---------------FETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~---------------~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.++||+|+++++++...               ....+..+++.+.++|||||.+++....
T Consensus       112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  172 (260)
T 2ozv_A          112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP  172 (260)
T ss_dssp             CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence            567899999998765431               1123678999999999999999875543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.56  E-value=1.7e-14  Score=131.09  Aligned_cols=117  Identities=20%  Similarity=0.280  Sum_probs=97.4

Q ss_pred             HHHHHHhccc-ccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         188 SYKSAILNNK-SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       188 ~~~~~i~~~l-~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      .+...+...+ ...++.+|||+|||+|.++..+++. + ..+|+|+|+|+ +++.+++++...+.  +++++.+|+.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~   85 (284)
T 3gu3_A            8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE   85 (284)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC
T ss_pred             HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcC
Confidence            3444444443 5667789999999999999999986 3 36999999999 99999999887664  8999999999887


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++ ++||+|++..+.+++   .+...+++++.++|||||++++....
T Consensus        86 ~~-~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           86 LN-DKYDIAICHAFLLHM---TTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             CS-SCEEEEEEESCGGGC---SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cC-CCeeEEEECChhhcC---CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            75 699999998877665   56679999999999999999977665

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.56  E-value=1.5e-14  Score=127.41  Aligned_cols=117  Identities=20%  Similarity=0.326  Sum_probs=97.1

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+...+.  ++.+|||+|||+|.++..+++.  .+|+|+|+|+ +++.|+++....+  .+++++.+|+.+.+++
T Consensus        21 ~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~   94 (243)
T 3d2l_A           21 PEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP   94 (243)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS
T ss_pred             HHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC
Confidence            345555555543  4579999999999999999887  5999999999 9999999988766  4789999999988776


Q ss_pred             CCceeEEEecc-chhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         266 VESVDIIISEW-MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       266 ~~~fD~Iis~~-~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                       ++||+|++.. +.+++........+++++.++|+|||.++++..+
T Consensus        95 -~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A           95 -EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             -SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence             7899999875 6666666678889999999999999999986543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.56  E-value=1.8e-14  Score=123.69  Aligned_cols=103  Identities=19%  Similarity=0.273  Sum_probs=89.0

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY  279 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~  279 (319)
                      ++ +|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++....+.  ++.++.+|+.+.+++.++||+|++... +
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~-~  104 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIFC-H  104 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEECC-C
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEhh-c
Confidence            45 999999999999999999866 999999999 99999999887765  799999999988877789999998532 2


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                        ........++.++.++|+|||.+++....
T Consensus       105 --~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A          105 --LPSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             --CCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             --CCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence              24467889999999999999999987644

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.56  E-value=7.9e-15  Score=129.30  Aligned_cols=102  Identities=18%  Similarity=0.226  Sum_probs=88.0

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY  279 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~  279 (319)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.++++.    ...+++++.+|+.+++++.++||+|++..+.+
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  127 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINSLE  127 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESCTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcChHh
Confidence            567999999999999999999865 999999999 888877653    23689999999999888889999999987766


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++   .+...+++++.++|+|||++++....
T Consensus       128 ~~---~~~~~~l~~~~~~L~pgG~l~i~~~~  155 (242)
T 3l8d_A          128 WT---EEPLRALNEIKRVLKSDGYACIAILG  155 (242)
T ss_dssp             SS---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hc---cCHHHHHHHHHHHhCCCeEEEEEEcC
Confidence            65   56678999999999999999987643

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.56  E-value=1e-14  Score=130.72  Aligned_cols=100  Identities=19%  Similarity=0.176  Sum_probs=87.6

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc-ch
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW-MG  278 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~-~~  278 (319)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|+++.      .+++++.+|+.++++ .++||+|++.. +.
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l  121 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRN------PDAVLHHGDMRDFSL-GRRFSAVTCMFSSI  121 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHC------TTSEEEECCTTTCCC-SCCEEEEEECTTGG
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC------CCCEEEECChHHCCc-cCCcCEEEEcCchh
Confidence            457999999999999999999865 999999999 998888764      278999999998877 58999999987 77


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +++........+++++.++|||||.++++.
T Consensus       122 ~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          122 GHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             GGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             hhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            777666788899999999999999999974

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.56  E-value=1.8e-14  Score=136.72  Aligned_cols=123  Identities=18%  Similarity=0.189  Sum_probs=101.1

Q ss_pred             cHHHHHHHHhccc--ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         185 RTESYKSAILNNK--SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       185 ~~~~~~~~i~~~l--~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      .++.+.+.+...+  ...++.+|||+|||+|.++..+++.+. +|+++|+|+ +++.+++++..+++  +++++.+|+.+
T Consensus       215 ~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~  291 (381)
T 3dmg_A          215 ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDE  291 (381)
T ss_dssp             HHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTT
T ss_pred             HHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhh
Confidence            3455566665544  234667999999999999999999865 999999999 99999999999887  48999999998


Q ss_pred             cccCCCceeEEEeccchhhhc--chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         262 VELPVESVDIIISEWMGYFLL--FETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ...+.++||+|++++++++..  .......++.++.++|+|||.+++....
T Consensus       292 ~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          292 ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence            776668999999999877522  1356789999999999999999987554

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.55  E-value=1.3e-14  Score=128.58  Aligned_cols=103  Identities=16%  Similarity=0.139  Sum_probs=87.8

Q ss_pred             CCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC---CCceeEEEe
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP---VESVDIIIS  274 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~---~~~fD~Iis  274 (319)
                      .++.+|||+|||+|.++..++. .+..+|+|+|+|+ +++.+++++..+++ .+++++++|+.+++.+   .++||+|++
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEeccHHHhcccccccCCccEEEE
Confidence            4678999999999999999986 3456999999999 99999999998888 4699999999887653   478999998


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ..+       ..+..++..+.++|+|||.+++....
T Consensus       148 ~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~  176 (240)
T 1xdz_A          148 RAV-------ARLSVLSELCLPLVKKNGLFVALKAA  176 (240)
T ss_dssp             ECC-------SCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             ecc-------CCHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            653       45688999999999999999986543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.55  E-value=2.1e-14  Score=124.95  Aligned_cols=108  Identities=14%  Similarity=0.159  Sum_probs=89.4

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEEEecc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDIIISEW  276 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~~  276 (319)
                      ++.+|||+|||+|.++..+++. +..+++|+|+|+ +++.|++++..+++ .+++++.+|+.+++  ++.++||+|+++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~~  119 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNF  119 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence            4579999999999999999885 456999999999 99999999998888 78999999998876  6667899999987


Q ss_pred             chhhhcch-----hhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         277 MGYFLLFE-----TMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       277 ~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +..+....     .....++.++.++|+|||.+++.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            64332110     0236789999999999999998764

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.55  E-value=9.8e-15  Score=129.10  Aligned_cols=114  Identities=12%  Similarity=0.122  Sum_probs=92.4

Q ss_pred             HHHHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-
Q psy8709         186 TESYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-  262 (319)
Q Consensus       186 ~~~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-  262 (319)
                      .+.+.+.+...+. ..++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++         ++++.+|+.+. 
T Consensus        25 ~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~   94 (240)
T 3dli_A           25 RELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYL   94 (240)
T ss_dssp             HHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHh
Confidence            3455555555554 34568999999999999999999866 899999999 88877643         78889998875 


Q ss_pred             -ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         263 -ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       263 -~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                       +++.++||+|++..+.+++. ...+..+++++.++|||||+++++..+
T Consensus        95 ~~~~~~~fD~i~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A           95 KSLPDKYLDGVMISHFVEHLD-PERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             HTSCTTCBSEEEEESCGGGSC-GGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             hhcCCCCeeEEEECCchhhCC-cHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence             66778999999988887764 356789999999999999999987654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.55  E-value=1.4e-14  Score=125.32  Aligned_cols=101  Identities=19%  Similarity=0.236  Sum_probs=86.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++.       ++.++.+|+.+++ +.++||+|++..+.
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~l  112 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAVWAHACL  112 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEEEECSCG
T ss_pred             CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEEEecCch
Confidence            3567999999999999999999865 999999999 999988876       4567889998887 66899999998887


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +++. .+.+..+++++.++|||||++++....
T Consensus       113 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          113 LHVP-RDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             GGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhcC-HHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            7764 357789999999999999999987543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.55  E-value=4e-14  Score=128.16  Aligned_cols=125  Identities=14%  Similarity=0.087  Sum_probs=101.2

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      ++.++.+.+.+++.+. .++.+|||+|||+|.++..+++ .+..+|+|+|+|+ +++.+++++..+++ .+++++++|+.
T Consensus        92 r~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~v~~~~~d~~  169 (276)
T 2b3t_A           92 RPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWF  169 (276)
T ss_dssp             CTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTT
T ss_pred             CchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEEcchh
Confidence            4556777788877765 5667999999999999999986 4566999999999 99999999998887 47999999998


Q ss_pred             ccccCCCceeEEEeccchhhhcc----------------------hhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         261 DVELPVESVDIIISEWMGYFLLF----------------------ETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       261 ~~~~~~~~fD~Iis~~~~~~l~~----------------------~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +. ++.++||+|+++++++....                      ...+..++..+.++|+|||++++....
T Consensus       170 ~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~  240 (276)
T 2b3t_A          170 SA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW  240 (276)
T ss_dssp             GG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred             hh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            74 33578999999977543211                      135678999999999999999987543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.55  E-value=1.4e-14  Score=137.50  Aligned_cols=108  Identities=21%  Similarity=0.289  Sum_probs=92.2

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhc-----C-C-CCcEEEEEcCcccc------
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKN-----K-Y-DSQIEVYHKLLEDV------  262 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~-----g-~-~~~i~~i~~d~~~~------  262 (319)
                      ..++.+|||+|||+|.++..+++.  +..+|+|+|+|+ +++.|++++..+     | . ..+++++.+|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            456789999999999999999885  355999999999 999999887654     3 2 25899999999987      


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +++.++||+|+++.+.+++   .++..+++++.++|||||++++...
T Consensus       161 ~~~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLS---TNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEccchhcC---CCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            7777899999999887776   4578999999999999999998753

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.55  E-value=2.4e-14  Score=125.35  Aligned_cols=111  Identities=14%  Similarity=0.212  Sum_probs=89.2

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-c-cC----CC
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-E-LP----VE  267 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~-~~----~~  267 (319)
                      +...++.+|||+|||+|..+..+++.  ...+|+++|+++ +++.|+++++..++.++++++.+|+.+. + ++    .+
T Consensus        54 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~  133 (221)
T 3u81_A           54 IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVD  133 (221)
T ss_dssp             HHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCC
T ss_pred             HHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCC
Confidence            33446689999999999999999984  256999999999 9999999999999877899999998653 2 22    16


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +||+|+++...+..   .....++..+ ++|+|||+++++.+..
T Consensus       134 ~fD~V~~d~~~~~~---~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          134 TLDMVFLDHWKDRY---LPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             CCSEEEECSCGGGH---HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             ceEEEEEcCCcccc---hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence            89999987654432   3344667777 9999999999987764

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.54  E-value=9.4e-16  Score=135.69  Aligned_cols=103  Identities=16%  Similarity=0.008  Sum_probs=87.6

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY  279 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~  279 (319)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+|+ +++.|++++..+++.++++++++|+.+.+ +.++||+|+++++++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence            67899999999999999999987 5999999999 99999999999988678999999998876 457999999998877


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +..   .....+.++.++|+|||.+++..
T Consensus       156 ~~~---~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          156 GPD---YATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             SGG---GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             Ccc---hhhhHHHHHHhhcCCcceeHHHH
Confidence            653   22335667788889998877664

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.54  E-value=2e-14  Score=136.21  Aligned_cols=118  Identities=13%  Similarity=0.213  Sum_probs=96.1

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHH-------HhcCC-CCcEEEEE
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDII-------RKNKY-DSQIEVYH  256 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~-------~~~g~-~~~i~~i~  256 (319)
                      ......++..+...++.+|||+|||+|.++..++. .+..+|+|||+++ +++.|++++       +.+|+ ..+++|++
T Consensus       159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~  238 (438)
T 3uwp_A          159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  238 (438)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            55667777778888999999999999999999886 5666799999999 998888754       34455 36899999


Q ss_pred             cCccccccCC--CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         257 KLLEDVELPV--ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       257 ~d~~~~~~~~--~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +|+.+.+++.  ..||+|+++.+.+    ..++...|.++.+.|||||+|+...
T Consensus       239 GD~~~lp~~d~~~~aDVVf~Nn~~F----~pdl~~aL~Ei~RvLKPGGrIVssE  288 (438)
T 3uwp_A          239 GDFLSEEWRERIANTSVIFVNNFAF----GPEVDHQLKERFANMKEGGRIVSSK  288 (438)
T ss_dssp             CCTTSHHHHHHHHTCSEEEECCTTC----CHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred             CcccCCccccccCCccEEEEccccc----CchHHHHHHHHHHcCCCCcEEEEee
Confidence            9999887643  4799999987642    2567788899999999999999653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.54  E-value=2.3e-14  Score=123.59  Aligned_cols=100  Identities=26%  Similarity=0.283  Sum_probs=87.2

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.|++++..++.. +++++.+|+.+..  .++||+|+++.+.
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~~~fD~i~~~~~~  135 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLADV--DGKFDLIVANILA  135 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTTC--CSCEEEEEEESCH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeccccccC--CCCceEEEECCcH
Confidence            46689999999999999999998777999999999 999999999998884 4999999997643  4799999998765


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ++      +..+++++.++|+|||++++..
T Consensus       136 ~~------~~~~l~~~~~~L~~gG~l~~~~  159 (205)
T 3grz_A          136 EI------LLDLIPQLDSHLNEDGQVIFSG  159 (205)
T ss_dssp             HH------HHHHGGGSGGGEEEEEEEEEEE
T ss_pred             HH------HHHHHHHHHHhcCCCCEEEEEe
Confidence            43      4788999999999999999864

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.54  E-value=1.3e-14  Score=127.36  Aligned_cols=108  Identities=13%  Similarity=0.094  Sum_probs=87.4

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-c--cCCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-E--LPVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~--~~~~~fD~Iis~  275 (319)
                      ++.+|||||||+|.++..+++. +...|+|+|+|+ +++.|++++..+++ .++.++.+|+.++ +  ++.++||.|+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l-~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL-SNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC-SSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            4579999999999999999985 456899999999 99999999998888 5799999999875 2  567899999987


Q ss_pred             cchhhhcchhh-----HHHHHHHHhcccCCCcEEEeecC
Q psy8709         276 WMGYFLLFETM-----IDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       276 ~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .+..|......     ...++.++.++|||||++++.+.
T Consensus       113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            54333211111     13589999999999999998764

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.54  E-value=2.8e-14  Score=122.96  Aligned_cols=114  Identities=17%  Similarity=0.181  Sum_probs=91.4

Q ss_pred             HHHHHHHhcccccC---CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         187 ESYKSAILNNKSLF---NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       187 ~~~~~~i~~~l~~~---~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      +.+.+.++..+...   ++.+|||+|||+|.++..++.. +..+++|+|+|+ +++.+++++..+++. +++++.+|+.+
T Consensus        48 ~~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  126 (207)
T 1jsx_A           48 EMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEE  126 (207)
T ss_dssp             CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTT
T ss_pred             HHHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhh
Confidence            33444444443322   4689999999999999999985 556999999999 999999999988874 59999999988


Q ss_pred             cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .. +.++||+|+++..       ..+..++..+.++|+|||.+++...
T Consensus       127 ~~-~~~~~D~i~~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          127 FP-SEPPFDGVISRAF-------ASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             SC-CCSCEEEEECSCS-------SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             CC-ccCCcCEEEEecc-------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            65 4478999998653       3457899999999999999998754

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.54  E-value=1.2e-14  Score=131.50  Aligned_cols=106  Identities=18%  Similarity=0.231  Sum_probs=88.9

Q ss_pred             HhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI  271 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~  271 (319)
                      +++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+ +++.++++.      .+++++.+|+.+++++ ++||+
T Consensus        49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~-~~fD~  120 (279)
T 3ccf_A           49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVD-KPLDA  120 (279)
T ss_dssp             HHHHHCCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCS-SCEEE
T ss_pred             HHHHhCCCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcC-CCcCE
Confidence            3344455677899999999999999999954 5999999999 999887654      4688999999988764 79999


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      |++..+.+++   .++..++.++.++|||||++++...
T Consensus       121 v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          121 VFSNAMLHWV---KEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             EEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcchhhhC---cCHHHHHHHHHHhcCCCcEEEEEec
Confidence            9998887776   4677899999999999999998654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.54  E-value=2.4e-14  Score=135.65  Aligned_cols=120  Identities=12%  Similarity=0.072  Sum_probs=96.7

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCC--cEEEEEcCccccc
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDS--QIEVYHKLLEDVE  263 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~--~i~~i~~d~~~~~  263 (319)
                      .-.+.++..+...++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.+++++..+++.+  +++++.+|+.+ .
T Consensus       209 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~  287 (375)
T 4dcm_A          209 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-G  287 (375)
T ss_dssp             HHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-T
T ss_pred             HHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-c
Confidence            344566777777777899999999999999999964 56999999999 9999999999988643  68899999987 4


Q ss_pred             cCCCceeEEEeccchhhhc--chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         264 LPVESVDIIISEWMGYFLL--FETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ++.++||+|++++++|...  .......++.++.++|||||.+++..
T Consensus       288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            5567999999999876421  12344578999999999999999854

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.53  E-value=2.9e-14  Score=125.92  Aligned_cols=118  Identities=14%  Similarity=0.187  Sum_probs=94.8

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--  263 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--  263 (319)
                      ...+.+...+...++.+|||+|||+|..+..+++. +..+|+++|+++ +++.|+++++..++.++++++.+|+.+..  
T Consensus        58 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (232)
T 3ntv_A           58 LTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN  137 (232)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH
T ss_pred             HHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence            33444444445556789999999999999999984 356999999999 99999999999998779999999997752  


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ...++||+|+++..      ......+++.+.++|+|||+++++...+
T Consensus       138 ~~~~~fD~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~d~~~~  179 (232)
T 3ntv_A          138 VNDKVYDMIFIDAA------KAQSKKFFEIYTPLLKHQGLVITDNVLY  179 (232)
T ss_dssp             HTTSCEEEEEEETT------SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred             hccCCccEEEEcCc------HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence            22578999997643      2446779999999999999999865433

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.53  E-value=3.6e-14  Score=133.16  Aligned_cols=126  Identities=16%  Similarity=0.057  Sum_probs=105.5

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      ..+.+...++......++.+|||+|||+|.++..++..+  ..+++|+|+++ +++.|+++++..|+. +++++++|+.+
T Consensus       187 l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~  265 (354)
T 3tma_A          187 LTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARH  265 (354)
T ss_dssp             CCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGG
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhh
Confidence            346677777777888888999999999999999999853  46999999999 999999999999986 89999999999


Q ss_pred             cccCCCceeEEEeccchhhhcc-----hhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         262 VELPVESVDIIISEWMGYFLLF-----ETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~-----~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ++.+.+.||+|++|+++.....     ......++..+.++|+|||.+++.+++.
T Consensus       266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            8877678999999988653222     1234788999999999999999887764

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.53  E-value=6.5e-15  Score=123.08  Aligned_cols=101  Identities=21%  Similarity=0.198  Sum_probs=86.0

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      +...++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.++++      .++++++.+|   .+++.++||+|++.
T Consensus        13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~D~v~~~   82 (170)
T 3i9f_A           13 IFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSVDFILFA   82 (170)
T ss_dssp             HHSSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCEEEEEEE
T ss_pred             cCcCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCceEEEEEc
Confidence            4456778999999999999999999865 999999999 88888876      2588999998   55667899999998


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .+.+++   .+...+++++.++|||||++++....
T Consensus        83 ~~l~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           83 NSFHDM---DDKQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             SCSTTC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cchhcc---cCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            877665   46789999999999999999987544

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.53  E-value=2.8e-14  Score=125.48  Aligned_cols=122  Identities=13%  Similarity=0.215  Sum_probs=97.0

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCcc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLE  260 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~  260 (319)
                      ....+...+....+..++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|+++++..++. ++++++.+|+.
T Consensus        40 ~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~  119 (221)
T 3dr5_A           40 MTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPL  119 (221)
T ss_dssp             HHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHH
T ss_pred             HHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHH
Confidence            34455555555444444559999999999999999984 2 56999999999 999999999999987 79999999987


Q ss_pred             ccc--cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         261 DVE--LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       261 ~~~--~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      +..  ++.++||+|+++...      .....+++.+.++|+|||+++++...+.
T Consensus       120 ~~l~~~~~~~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~dn~~~~  167 (221)
T 3dr5_A          120 DVMSRLANDSYQLVFGQVSP------MDLKALVDAAWPLLRRGGALVLADALLD  167 (221)
T ss_dssp             HHGGGSCTTCEEEEEECCCT------TTHHHHHHHHHHHEEEEEEEEETTTTGG
T ss_pred             HHHHHhcCCCcCeEEEcCcH------HHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            753  335799999987532      3456789999999999999999876653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.53  E-value=1.8e-14  Score=124.67  Aligned_cols=98  Identities=19%  Similarity=0.236  Sum_probs=84.2

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY  279 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~  279 (319)
                      ++.+|||+|||+|.++..+   +..+++|+|+|+ +++.++++.      .+++++.+|+.+++++.++||+|++..+.+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  106 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFTTLE  106 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEESCTT
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcChhh
Confidence            6789999999999998877   445999999999 988888765      468899999999888778999999987766


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++   .++..+++++.++|||||.+++....
T Consensus       107 ~~---~~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A          107 FV---EDVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             TC---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hc---CCHHHHHHHHHHHcCCCCEEEEEecC
Confidence            65   46789999999999999999987644

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.53  E-value=2.7e-14  Score=128.50  Aligned_cols=121  Identities=12%  Similarity=0.131  Sum_probs=97.6

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CC-CEEEEEecHH-------HHHHHHHHHHhcCCCCcEEEEEc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GA-AKVFAIEKSD-------IAYETIDIIRKNKYDSQIEVYHK  257 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s~-------~i~~a~~~~~~~g~~~~i~~i~~  257 (319)
                      ......++..+...++.+|||+|||+|.++..+++. |. .+|+|+|+|+       +++.+++++...++.++++++.+
T Consensus        29 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~  108 (275)
T 3bkx_A           29 TAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN  108 (275)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECS
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEEC
Confidence            445566667777788899999999999999999986 33 6999999997       68999999988887778999999


Q ss_pred             C---ccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         258 L---LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       258 d---~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      |   ....+++.++||+|++..+.+++..   ...+++.+.++++|||++++...+
T Consensus       109 d~~~~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          109 TNLSDDLGPIADQHFDRVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             CCTTTCCGGGTTCCCSEEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             ChhhhccCCCCCCCEEEEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEEec
Confidence            8   4445566789999999888777643   345777777788889999986544

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.53  E-value=2.2e-15  Score=129.96  Aligned_cols=124  Identities=15%  Similarity=-0.043  Sum_probs=81.5

Q ss_pred             cccHHHHHHHHhccccc-CCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709         183 PIRTESYKSAILNNKSL-FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL  259 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~  259 (319)
                      ++.++.+.+.+++.+.. .++.+|||+|||+|.++..+++.+ ..+++|+|+++ +++.+++++..++.  +++++++|+
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~   88 (215)
T 4dzr_A           11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADG   88 (215)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHH
T ss_pred             CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcch
Confidence            34557777788777765 677899999999999999999964 44999999999 99999999888776  789999999


Q ss_pred             cccccCC-----CceeEEEeccchhhhcch-----------------------hhHHHHHHHHhcccCCCcE-EEeecC
Q psy8709         260 EDVELPV-----ESVDIIISEWMGYFLLFE-----------------------TMIDSVIDARNRFLKPDGV-VCPNRF  309 (319)
Q Consensus       260 ~~~~~~~-----~~fD~Iis~~~~~~l~~~-----------------------~~~~~~l~~~~r~LkpgG~-li~~~~  309 (319)
                      .+ +++.     ++||+|+++++++.....                       ..+..+++++.++|||||+ +++...
T Consensus        89 ~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A           89 IE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             HH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             Hh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            87 4444     799999999876432110                       1127888999999999999 666543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.52  E-value=3.2e-14  Score=124.13  Aligned_cols=108  Identities=10%  Similarity=0.130  Sum_probs=87.8

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEEEecc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDIIISEW  276 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~~  276 (319)
                      ++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++ .+++++.+|+.+++  ++.++||.|+++.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            4578999999999999999885 456999999999 99999999998887 68999999998865  5667899998765


Q ss_pred             chhhhcch-----hhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         277 MGYFLLFE-----TMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       277 ~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +..|....     -....++.++.++|||||.+++.+.
T Consensus       117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td  154 (213)
T 2fca_A          117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  154 (213)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence            43322110     0136789999999999999998763

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.52  E-value=2.7e-14  Score=128.65  Aligned_cols=116  Identities=13%  Similarity=0.068  Sum_probs=87.3

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      ..+.++..+...++.+|||+|||+|.++..+++.+. +|+|+|+|+ |++.|++++..+.  ....+...+........+
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~~~~~~~~  109 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAEIPKELAG  109 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSCCCGGGTT
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccccccccCC
Confidence            455666777788889999999999999999999875 999999999 9999998876541  122222222200111246


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +||+|+++.+.+++.. .....++.++.++| |||+++++..
T Consensus       110 ~fD~Vv~~~~l~~~~~-~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          110 HFDFVLNDRLINRFTT-EEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             CCSEEEEESCGGGSCH-HHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             CccEEEEhhhhHhCCH-HHHHHHHHHHHHhC-cCcEEEEEec
Confidence            8999999888776543 56778999999999 9999998754

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.52  E-value=4.3e-14  Score=126.51  Aligned_cols=103  Identities=11%  Similarity=0.050  Sum_probs=87.7

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC---CCceeEEE
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP---VESVDIII  273 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~---~~~fD~Ii  273 (319)
                      ..++.+|||+|||+|..+..++.. +..+|+++|+++ +++.++++++.+++ .+++++++|++++...   .++||+|+
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l-~~v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL-KGARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CceEEEECcHHHhhcccccCCCceEEE
Confidence            345689999999999999999885 567999999999 99999999999998 4699999999887642   37899999


Q ss_pred             eccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +..+       ..+..++..+.++|||||++++-.+
T Consensus       157 s~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          157 ARAV-------APLCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             EESS-------CCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             ECCc-------CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            8654       3457889999999999999987544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.52  E-value=1.9e-14  Score=128.27  Aligned_cols=123  Identities=9%  Similarity=-0.008  Sum_probs=93.7

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHhc---CCCCc---------
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA---GAAKVFAIEKSD-IAYETIDIIRKN---KYDSQ---------  251 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s~-~i~~a~~~~~~~---g~~~~---------  251 (319)
                      .+.+.++..+...++.+|||+|||+|.++..+++.   +..+|+|+|+|+ +++.|++++..+   ++..+         
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~  117 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE  117 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence            45555555554446679999999999999998875   345899999999 999999888765   44222         


Q ss_pred             ----------------EE-------------EEEcCcccccc-----CCCceeEEEeccchhhhcc------hhhHHHHH
Q psy8709         252 ----------------IE-------------VYHKLLEDVEL-----PVESVDIIISEWMGYFLLF------ETMIDSVI  291 (319)
Q Consensus       252 ----------------i~-------------~i~~d~~~~~~-----~~~~fD~Iis~~~~~~l~~------~~~~~~~l  291 (319)
                                      ++             ++++|+.+...     +..+||+|++++++.....      ......++
T Consensus       118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l  197 (250)
T 1o9g_A          118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLL  197 (250)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHH
T ss_pred             hcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHH
Confidence                            66             99999887432     3348999999987654432      35677899


Q ss_pred             HHHhcccCCCcEEEeecCc
Q psy8709         292 DARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       292 ~~~~r~LkpgG~li~~~~t  310 (319)
                      .++.++|+|||++++...+
T Consensus       198 ~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          198 RSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             HHHHHHSCTTCEEEEEESS
T ss_pred             HHHHHhcCCCcEEEEeCcc
Confidence            9999999999999985433

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.52  E-value=6.3e-14  Score=127.83  Aligned_cols=127  Identities=18%  Similarity=0.106  Sum_probs=100.8

Q ss_pred             CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      .++.++.+.+.+++.+...++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|++++..+++.++++++++|+.
T Consensus       104 pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~  183 (284)
T 1nv8_A          104 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL  183 (284)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred             cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcch
Confidence            34566778888777665556679999999999999999887556999999999 99999999999998767999999998


Q ss_pred             ccccCCCce---eEEEeccchhhhc--------chhh--------HHHHHHHHh-cccCCCcEEEeecCc
Q psy8709         261 DVELPVESV---DIIISEWMGYFLL--------FETM--------IDSVIDARN-RFLKPDGVVCPNRFT  310 (319)
Q Consensus       261 ~~~~~~~~f---D~Iis~~~~~~l~--------~~~~--------~~~~l~~~~-r~LkpgG~li~~~~t  310 (319)
                      +. ++ ++|   |+|++|+++....        ++..        ...+++++. +.|+|||.+++....
T Consensus       184 ~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~  251 (284)
T 1nv8_A          184 EP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  251 (284)
T ss_dssp             GG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             hh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            73 33 478   9999997754221        1111        126789999 999999999987654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.52  E-value=2.6e-14  Score=133.19  Aligned_cols=121  Identities=16%  Similarity=0.029  Sum_probs=95.0

Q ss_pred             HHHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCC-cEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDS-QIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~-~i~~i~~d~~~~~  263 (319)
                      ....+++...+. ..++.+|||+|||+|.++..+++.+. +|+++|+|+ +++.|++++..+++.+ +++++++|+.+..
T Consensus       138 ~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l  216 (332)
T 2igt_A          138 IVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI  216 (332)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHH
Confidence            334444444443 34567999999999999999999877 999999999 9999999999998855 5999999998753


Q ss_pred             cC----CCceeEEEeccchhhhc-------chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         264 LP----VESVDIIISEWMGYFLL-------FETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       264 ~~----~~~fD~Iis~~~~~~l~-------~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ..    .++||+|+++++.+...       ....+..++..+.++|+|||++++..
T Consensus       217 ~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          217 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             HHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            21    46899999998754321       23467889999999999999966543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.51  E-value=6e-14  Score=123.23  Aligned_cols=102  Identities=16%  Similarity=0.179  Sum_probs=86.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe-ccc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS-EWM  277 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis-~~~  277 (319)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++.      .+++++.+|+.+.++ .++||+|+| ...
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~~D~v~~~~~~  110 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-GRKFSAVVSMFSS  110 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-SSCEEEEEECTTG
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-CCCCcEEEEcCch
Confidence            4568999999999999999999765 999999999 998887753      468999999998776 478999995 436


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .+++........+++++.++|+|||.++++..
T Consensus       111 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A          111 VGYLKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             GGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             HhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            66666667788999999999999999998754

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.51  E-value=8.1e-14  Score=121.51  Aligned_cols=103  Identities=20%  Similarity=0.231  Sum_probs=81.6

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc----ccCCCcee
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV----ELPVESVD  270 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~----~~~~~~fD  270 (319)
                      +...++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.+.+..+..   .++.++.+|+...    +++ ++||
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~-~~fD  128 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIV-EKVD  128 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTC-CCEE
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccc-ccee
Confidence            44567789999999999999998885 446999999999 887777766543   4788999998764    334 7899


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +|+++..     .......++.+++++|||||++++..
T Consensus       129 ~V~~~~~-----~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          129 LIYQDIA-----QKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecc-----ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            9999742     22345566899999999999999873

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.51  E-value=6.1e-14  Score=123.51  Aligned_cols=110  Identities=22%  Similarity=0.252  Sum_probs=89.3

Q ss_pred             HHHHH---hcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc--
Q psy8709         189 YKSAI---LNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED--  261 (319)
Q Consensus       189 ~~~~i---~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~--  261 (319)
                      +...+   +..+...++.+|||+|||+|.++..+++. |..+|+|+|+|+ +++.++++++.+   .++.++.+|+.+  
T Consensus        59 ~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~  135 (230)
T 1fbn_A           59 LAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQ  135 (230)
T ss_dssp             HHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGG
T ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcc
Confidence            33566   55566677889999999999999999986 557999999999 999998887654   689999999987  


Q ss_pred             --cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         262 --VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       262 --~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                        .+++ ++||+|+.+.     ........++.++.++|||||++++.
T Consensus       136 ~~~~~~-~~~D~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          136 EYANIV-EKVDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             GGTTTS-CCEEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccC-ccEEEEEEec-----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence              5555 7899999442     22234577899999999999999985

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.51  E-value=6.1e-14  Score=133.30  Aligned_cols=114  Identities=16%  Similarity=0.132  Sum_probs=94.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCC-cEEEEEcCccccc--c--CCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDS-QIEVYHKLLEDVE--L--PVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~-~i~~i~~d~~~~~--~--~~~~fD~Ii  273 (319)
                      .++.+|||+|||+|.++..+++.++.+|+|+|+|+ +++.|+++++.+++.+ +++++++|+.+..  .  ...+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            46789999999999999999998777999999999 9999999999999865 8999999997642  1  235899999


Q ss_pred             eccchhh------hcchhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         274 SEWMGYF------LLFETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       274 s~~~~~~------l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ++++.+.      ......+..++..+.++|+|||++++++++..+
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~  336 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM  336 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence            9987631      112344667888999999999999999887654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.50  E-value=1e-13  Score=123.78  Aligned_cols=109  Identities=13%  Similarity=0.185  Sum_probs=90.5

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-cc-C-CCceeE
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-EL-P-VESVDI  271 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~~-~-~~~fD~  271 (319)
                      ...++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+. +. . .++||+
T Consensus        60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~  139 (248)
T 3tfw_A           60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL  139 (248)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred             hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence            3446689999999999999999985 3 56999999999 9999999999999977999999999763 22 1 248999


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      |+++..      ......++.++.++|||||+++++.+...
T Consensus       140 V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~  174 (248)
T 3tfw_A          140 IFIDAD------KPNNPHYLRWALRYSRPGTLIIGDNVVRD  174 (248)
T ss_dssp             EEECSC------GGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred             EEECCc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence            998653      24556789999999999999998876543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.50  E-value=4.3e-14  Score=128.13  Aligned_cols=116  Identities=15%  Similarity=0.073  Sum_probs=94.3

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc----CCCce
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL----PVESV  269 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~----~~~~f  269 (319)
                      +...++.+|||+|||+|..+..+++.  +..+|+|+|+++ +++.++++++..++ .+++++.+|+.++..    +.++|
T Consensus        79 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~~f  157 (274)
T 3ajd_A           79 LNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV-LNTIIINADMRKYKDYLLKNEIFF  157 (274)
T ss_dssp             HCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC-CcEEEEeCChHhcchhhhhccccC
Confidence            34567789999999999999999883  447999999999 99999999999988 489999999987654    24789


Q ss_pred             eEEEeccchhhhc---------------chhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         270 DIIISEWMGYFLL---------------FETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       270 D~Iis~~~~~~l~---------------~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      |+|+++++...+.               .......++..+.++|||||.+++++|++..
T Consensus       158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~  216 (274)
T 3ajd_A          158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEV  216 (274)
T ss_dssp             EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCT
T ss_pred             CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCh
Confidence            9999986543221               0133578899999999999999999998753

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.50  E-value=4.8e-14  Score=128.26  Aligned_cols=108  Identities=12%  Similarity=0.123  Sum_probs=82.3

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc-----------------CCC------------
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN-----------------KYD------------  249 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~-----------------g~~------------  249 (319)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+ |++.|+++++..                 +..            
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            36689999999999966555554455999999999 999988765432                 100            


Q ss_pred             CcEEEEEcCccc-cc-----cCCCceeEEEeccchhhhcc-hhhHHHHHHHHhcccCCCcEEEee
Q psy8709         250 SQIEVYHKLLED-VE-----LPVESVDIIISEWMGYFLLF-ETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       250 ~~i~~i~~d~~~-~~-----~~~~~fD~Iis~~~~~~l~~-~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ..+.++.+|+.+ .+     ++.++||+|+++.+++++.. ..++..+++++.++|||||+|++.
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            025677889877 44     33457999999988877543 357889999999999999999986

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.50  E-value=6.9e-14  Score=122.71  Aligned_cols=114  Identities=15%  Similarity=0.096  Sum_probs=92.8

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ....+...+...+...++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.++++....+   +++++.+|+.+..
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~  129 (231)
T 1vbf_A           54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGY  129 (231)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCC
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccccc
Confidence            345566677777777788899999999999999999986 6999999999 9999999887665   7999999998733


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .+.++||+|++..+.+++.         .++.++|+|||++++...+.
T Consensus       130 ~~~~~fD~v~~~~~~~~~~---------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          130 EEEKPYDRVVVWATAPTLL---------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GGGCCEEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEECSS
T ss_pred             ccCCCccEEEECCcHHHHH---------HHHHHHcCCCcEEEEEEcCC
Confidence            3357899999987765542         35778999999999876653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.50  E-value=5.9e-14  Score=125.73  Aligned_cols=110  Identities=21%  Similarity=0.258  Sum_probs=87.0

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      .+.+...+.  ++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++..     .+  ++.+|+.+++++.++
T Consensus        45 ~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~~~~~~  114 (260)
T 2avn_A           45 GSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLPFPSGA  114 (260)
T ss_dssp             HHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCCSCTTC
T ss_pred             HHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCCCCCCC
Confidence            334443333  668999999999999999999865 999999999 9988887643     12  889999988887789


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ||+|++.....++.  .++..+++++.++|||||.+++...+.
T Consensus       115 fD~v~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          115 FEAVLALGDVLSYV--ENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             EEEEEECSSHHHHC--SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             EEEEEEcchhhhcc--ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            99999875433332  237899999999999999999876554

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.49  E-value=2.1e-13  Score=120.20  Aligned_cols=107  Identities=17%  Similarity=0.205  Sum_probs=87.1

Q ss_pred             hcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc---ccCCC
Q psy8709         194 LNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV---ELPVE  267 (319)
Q Consensus       194 ~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~---~~~~~  267 (319)
                      +..+...++.+|||+|||+|.++..+++.  +..+|+|+|+|+ +++.+.++++.+   .+++++.+|+.+.   +.+.+
T Consensus        70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~  146 (233)
T 2ipx_A           70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIA  146 (233)
T ss_dssp             CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCC
T ss_pred             HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCC
Confidence            44556777889999999999999999986  346999999999 888888888776   5899999999873   34457


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +||+|+++.+     .......++.++.++|||||+++++.
T Consensus       147 ~~D~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~~  182 (233)
T 2ipx_A          147 MVDVIFADVA-----QPDQTRIVALNAHTFLRNGGHFVISI  182 (233)
T ss_dssp             CEEEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence            8999999765     22344567888999999999999853

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.49  E-value=6.4e-14  Score=122.41  Aligned_cols=108  Identities=18%  Similarity=0.184  Sum_probs=89.6

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCC----Cc
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPV----ES  268 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~----~~  268 (319)
                      ...++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.++++++..++.++++++.+|+.+..  ++.    ++
T Consensus        61 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (225)
T 3tr6_A           61 KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQ  140 (225)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred             HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence            3445689999999999999999985 3 56999999999 99999999999998778999999996542  211    68


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ||+|+++..      ......++..+.++|+|||+++++...+
T Consensus       141 fD~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~  177 (225)
T 3tr6_A          141 YDLIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVLR  177 (225)
T ss_dssp             EEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             ccEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            999997654      2456778999999999999999876654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.49  E-value=7e-14  Score=129.35  Aligned_cols=117  Identities=15%  Similarity=0.091  Sum_probs=94.5

Q ss_pred             ccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEE
Q psy8709         196 NKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDII  272 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~I  272 (319)
                      .+...++.+|||+|||+|..+..+++.  +..+|+|+|+++ +++.++++++.+++ .+++++++|+.+++...++||+|
T Consensus       113 ~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~-~~v~~~~~D~~~~~~~~~~fD~I  191 (315)
T 1ixk_A          113 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVEFDKI  191 (315)
T ss_dssp             HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGGGCCCEEEE
T ss_pred             HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CeEEEEECChhhcccccccCCEE
Confidence            345667889999999999999999984  346999999999 99999999999888 47999999998876545789999


Q ss_pred             Eeccchhhh---cch----------------hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         273 ISEWMGYFL---LFE----------------TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       273 is~~~~~~l---~~~----------------~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      +++++....   ...                .....++.++.++|||||++++++|++..
T Consensus       192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~  251 (315)
T 1ixk_A          192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  251 (315)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence            997653211   110                11258899999999999999999998753

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.49  E-value=5.9e-14  Score=125.22  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=89.4

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC----------------------------
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY----------------------------  248 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~----------------------------  248 (319)
                      ...++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.+++++...+.                            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            4456689999999999999998887666999999999 99999888765421                            


Q ss_pred             CCcE-EEEEcCcccccc-CC---CceeEEEeccchhhhc-chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         249 DSQI-EVYHKLLEDVEL-PV---ESVDIIISEWMGYFLL-FETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       249 ~~~i-~~i~~d~~~~~~-~~---~~fD~Iis~~~~~~l~-~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ..++ .++.+|+.+... +.   ++||+|++..+.+++. +...+..++.++.++|||||++++..
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            0127 899999987643 44   7899999988776443 34578899999999999999999865

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.49  E-value=9.4e-14  Score=122.31  Aligned_cols=117  Identities=16%  Similarity=0.224  Sum_probs=94.6

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-cc
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-EL  264 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~~  264 (319)
                      .....+...+...++.+|||+|||+|..+..+++. +..+|+++|+++ +++.|++++...+..++++++.+|+.+. +.
T Consensus        41 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  120 (233)
T 2gpy_A           41 LGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK  120 (233)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH
T ss_pred             HHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence            33444444445556789999999999999999985 356999999999 9999999999988877899999999874 32


Q ss_pred             C--CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         265 P--VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       265 ~--~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .  .++||+|+++...      .....++..+.++|+|||+++++...
T Consensus       121 ~~~~~~fD~I~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          121 LELYPLFDVLFIDAAK------GQYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             HTTSCCEEEEEEEGGG------SCHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             cccCCCccEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            2  4789999987652      35678899999999999999998543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.49  E-value=1.1e-13  Score=120.73  Aligned_cols=109  Identities=17%  Similarity=0.245  Sum_probs=90.0

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cC---CCce
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LP---VESV  269 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~---~~~f  269 (319)
                      ...++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+..  ++   .++|
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f  134 (223)
T 3duw_A           55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF  134 (223)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred             HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence            3456689999999999999999986 2 45999999999 99999999999998778999999997642  11   1579


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      |+|+++...      .....++..+.++|+|||+++++.....
T Consensus       135 D~v~~d~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~~  171 (223)
T 3duw_A          135 DFIFIDADK------QNNPAYFEWALKLSRPGTVIIGDNVVRE  171 (223)
T ss_dssp             SEEEECSCG------GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred             CEEEEcCCc------HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            999987652      3456889999999999999998766543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.49  E-value=8.9e-14  Score=128.61  Aligned_cols=115  Identities=15%  Similarity=0.013  Sum_probs=95.0

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ..+...++..+...++.+|||+|||+|.++..+++.+  ..+|+|+|+|+ +++.|++++..+++ .+++++.+|+.+..
T Consensus        61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~-~~v~~~~~d~~~~~  139 (317)
T 1dl5_A           61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGV  139 (317)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEECChhhcc
Confidence            4556667777777888999999999999999999863  25799999999 99999999999888 45999999998855


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .+.++||+|++..+.+++.         ..+.+.|||||+++++..+.
T Consensus       140 ~~~~~fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          140 PEFSPYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             GGGCCEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEBCBG
T ss_pred             ccCCCeEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEECCC
Confidence            4457899999988766542         45678999999999886654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.49  E-value=1.1e-13  Score=117.13  Aligned_cols=103  Identities=17%  Similarity=0.169  Sum_probs=86.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec-cc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE-WM  277 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~-~~  277 (319)
                      .++.+|||+|||+|.++..+++.+. +++|+|+++ +++.++++.      .+++++.+|+.+.+++.++||+|+++ ..
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i~~~~~~  117 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGNV  117 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEEEECCCC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEEEECCcH
Confidence            4568999999999999999999865 999999999 888887654      35889999999887777899999997 45


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .+++ ..+....++.++.++|+|||.+++...+
T Consensus       118 ~~~~-~~~~~~~~l~~~~~~l~~~G~l~~~~~~  149 (195)
T 3cgg_A          118 MGFL-AEDGREPALANIHRALGADGRAVIGFGA  149 (195)
T ss_dssp             GGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             Hhhc-ChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            5443 4466789999999999999999986543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.49  E-value=1e-13  Score=120.26  Aligned_cols=115  Identities=19%  Similarity=0.124  Sum_probs=92.4

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ...+...+...+...++.+|||+|||+|.++..+++.+.  .+|+++|+++ +++.+++++...+. .+++++.+|+...
T Consensus        62 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  140 (215)
T 2yxe_A           62 AIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-DNVIVIVGDGTLG  140 (215)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEESCGGGC
T ss_pred             cHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccC
Confidence            345556666667777889999999999999999998642  6999999999 99999999988877 5699999998653


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ....++||+|++....+++.         .++.++|||||.+++...+
T Consensus       141 ~~~~~~fD~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          141 YEPLAPYDRIYTTAAGPKIP---------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             CGGGCCEEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred             CCCCCCeeEEEECCchHHHH---------HHHHHHcCCCcEEEEEECC
Confidence            33257899999987765442         3678899999999987654

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.49  E-value=8.2e-14  Score=126.50  Aligned_cols=124  Identities=20%  Similarity=0.196  Sum_probs=96.5

Q ss_pred             EEeeecCCCcccHHHH--HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCC
Q psy8709         174 VFAIEKSGTPIRTESY--KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDS  250 (319)
Q Consensus       174 V~avd~d~~~~~~~~~--~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~  250 (319)
                      .+.+|.....+.....  ...+.+.  ..++.+|||+|||+|.+++.+++.|.++|+++|+++ +++.+++|++.|++.+
T Consensus        98 ~~~~D~~k~~f~~~~~~er~ri~~~--~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~  175 (278)
T 3k6r_A           98 KYKLDVAKIMFSPANVKERVRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVED  175 (278)
T ss_dssp             EEEEETTTSCCCGGGHHHHHHHHHH--CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTT
T ss_pred             EEEEeccceEEcCCcHHHHHHHHHh--cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            3455555555554333  2333332  356789999999999999999999888999999999 9999999999999999


Q ss_pred             cEEEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       251 ~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +++++++|+.++.. .+.||.|+++.+...       ..++..+.++|||||.+.+.
T Consensus       176 ~v~~~~~D~~~~~~-~~~~D~Vi~~~p~~~-------~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          176 RMSAYNMDNRDFPG-ENIADRILMGYVVRT-------HEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             TEEEECSCTTTCCC-CSCEEEEEECCCSSG-------GGGHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEeCcHHHhcc-ccCCCEEEECCCCcH-------HHHHHHHHHHcCCCCEEEEE
Confidence            99999999988754 478999999876432       23556667899999998653

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.48  E-value=9.1e-14  Score=123.86  Aligned_cols=113  Identities=20%  Similarity=0.339  Sum_probs=95.0

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ....+...+...++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|+++++.+++.++++++.+|+.+. ++
T Consensus        81 ~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~  159 (255)
T 3mb5_A           81 DAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IE  159 (255)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CC
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cC
Confidence            3446666777888899999999999999999986 4 56999999999 9999999999999866799999999865 56


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .++||+|+++++        ....++.++.++|+|||.+++...+
T Consensus       160 ~~~~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~  196 (255)
T 3mb5_A          160 EENVDHVILDLP--------QPERVVEHAAKALKPGGFFVAYTPC  196 (255)
T ss_dssp             CCSEEEEEECSS--------CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             CCCcCEEEECCC--------CHHHHHHHHHHHcCCCCEEEEEECC
Confidence            678999998654        2246788899999999999976543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.48  E-value=8.9e-14  Score=124.67  Aligned_cols=111  Identities=20%  Similarity=0.310  Sum_probs=90.7

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      +....+.+...  ..++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.+++++..++..  ++++.+|+.+. +
T Consensus       107 t~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~  180 (254)
T 2nxc_A          107 TRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-L  180 (254)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-G
T ss_pred             HHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-C
Confidence            33444444433  35678999999999999999999877 999999999 999999999998873  89999998763 4


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +.++||+|+++.+.+      .+..++..+.++|+|||+++++.
T Consensus       181 ~~~~fD~Vv~n~~~~------~~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          181 PFGPFDLLVANLYAE------LHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             GGCCEEEEEEECCHH------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCCEEEECCcHH------HHHHHHHHHHHHcCCCCEEEEEe
Confidence            457899999986543      35688999999999999999864

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.48  E-value=1.5e-13  Score=121.25  Aligned_cols=105  Identities=18%  Similarity=0.151  Sum_probs=90.2

Q ss_pred             CCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      .++.+|+|+|||+|.++..+++.+ ..+|+|+|+++ +++.|+++++.+++.++++++.+|..+...+.++||+|+...+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            356899999999999999999975 56899999999 9999999999999988999999999886655447999887666


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +.     ..+..++....+.|+++|+|+.+..
T Consensus       100 Gg-----~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A          100 GG-----RLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             CH-----HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ch-----HHHHHHHHHHHHHhCcCCEEEEECC
Confidence            43     4467889999999999999997764

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.48  E-value=1.6e-13  Score=120.83  Aligned_cols=105  Identities=15%  Similarity=0.095  Sum_probs=88.3

Q ss_pred             CCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+++ +++.|+++++.+++.++++++.+|..+.-.+.++||+|+...+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~   93 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM   93 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence            356799999999999999999975 56899999999 9999999999999988899999999653222236999997666


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +.     ..+..++......|+|+|+|+++..
T Consensus        94 Gg-----~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           94 GG-----RLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             CH-----HHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             Ch-----HHHHHHHHHHHHHhCCCCEEEEECC
Confidence            43     3467899999999999999998765

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.48  E-value=1.1e-13  Score=129.32  Aligned_cols=119  Identities=18%  Similarity=0.134  Sum_probs=95.6

Q ss_pred             HHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA-AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ...+.+++.+...++.+|||+|||+|.++..+++.+. .+|+++|+|+ +++.+++++..++.  .++++.+|+.+..  
T Consensus       183 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~~--  258 (343)
T 2pjd_A          183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSEV--  258 (343)
T ss_dssp             HHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTC--
T ss_pred             HHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEccccccc--
Confidence            3455666666555667999999999999999998753 4999999999 99999999998887  3677889987643  


Q ss_pred             CCceeEEEeccchhhhc--chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         266 VESVDIIISEWMGYFLL--FETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .++||+|++++++|+..  .......+++++.++|||||.+++....
T Consensus       259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            57899999998876421  2356789999999999999999976543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.48  E-value=1.9e-13  Score=123.88  Aligned_cols=104  Identities=27%  Similarity=0.275  Sum_probs=88.2

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ..++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|+++++.+++ .++.++.+|+.+.+. .++||+|++++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l-~~~~~~~~d~~~~~~-~~~~D~Vi~d~  194 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL-NNVIPILADNRDVEL-KDVADRVIMGY  194 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC-SSEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEECChHHcCc-cCCceEEEECC
Confidence            556789999999999999999986 456999999999 99999999999998 578999999988733 46899999987


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +.       ....++..+.+.|+|||+++++....
T Consensus       195 p~-------~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          195 VH-------KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             CS-------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cc-------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            74       33457788889999999999776543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.48  E-value=1.6e-13  Score=139.11  Aligned_cols=123  Identities=10%  Similarity=0.065  Sum_probs=101.4

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHhc------CCCCcEEEEE
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSD-IAYETIDIIRKN------KYDSQIEVYH  256 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~gvD~s~-~i~~a~~~~~~~------g~~~~i~~i~  256 (319)
                      .....+++++.+...++.+|||+|||+|.++..+++.+.  .+|+|+|+|+ +++.|++++...      +. .++++++
T Consensus       706 ~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiq  784 (950)
T 3htx_A          706 SKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYD  784 (950)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEE
T ss_pred             HHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEE
Confidence            355566677777667889999999999999999999762  5999999999 999998876532      44 5899999


Q ss_pred             cCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         257 KLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       257 ~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +|+.+++++.++||+|++..+.+++.. .....+++++.++|||| .+++++++.
T Consensus       785 GDa~dLp~~d~sFDlVV~~eVLeHL~d-p~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          785 GSILEFDSRLHDVDIGTCLEVIEHMEE-DQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             SCTTSCCTTSCSCCEEEEESCGGGSCH-HHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             CchHhCCcccCCeeEEEEeCchhhCCh-HHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            999999888889999999888777643 44567999999999999 777776654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.47  E-value=1.5e-13  Score=121.84  Aligned_cols=110  Identities=12%  Similarity=0.105  Sum_probs=83.7

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHh------cCCCCcEEEEEcCccc-cc--cCCCc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRK------NKYDSQIEVYHKLLED-VE--LPVES  268 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~------~g~~~~i~~i~~d~~~-~~--~~~~~  268 (319)
                      .++.+|||||||+|.++..+++. +...|+|+|+|+ +++.|+++++.      .+. .++.++.+|+.+ ++  ++.++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTC
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcC
Confidence            34568999999999999999985 456999999999 99999887654      344 689999999987 54  66789


Q ss_pred             eeEEEeccchhhhcc--hh---hHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         269 VDIIISEWMGYFLLF--ET---MIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       269 fD~Iis~~~~~~l~~--~~---~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ||.|+++.+..|...  ..   ....++.++.++|||||.|++.+..
T Consensus       124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            999997654333211  00   0147899999999999999987653

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.47  E-value=4.5e-14  Score=122.69  Aligned_cols=111  Identities=19%  Similarity=0.225  Sum_probs=87.9

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc---cc
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV---EL  264 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~---~~  264 (319)
                      ....++..+...++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++       .++.+..+++.++   +.
T Consensus        40 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~  111 (227)
T 3e8s_A           40 TDQAILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKV  111 (227)
T ss_dssp             HHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCS
T ss_pred             ccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccc
Confidence            334455555556678999999999999999999865 999999999 88888765       3567888888776   33


Q ss_pred             C-CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         265 P-VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       265 ~-~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      + ..+||+|++..+.+    ..++..+++++.++|||||++++.....
T Consensus       112 ~~~~~fD~v~~~~~l~----~~~~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A          112 PVGKDYDLICANFALL----HQDIIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             CCCCCEEEEEEESCCC----SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             ccCCCccEEEECchhh----hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            3 34599999987765    2566789999999999999999876543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.47  E-value=2e-13  Score=121.35  Aligned_cols=105  Identities=21%  Similarity=0.187  Sum_probs=89.8

Q ss_pred             CCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+++ +++.|+++++.+++.+++++..+|..+...+.++||+|++..+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence            356799999999999999999975 55899999999 9999999999999988899999999876554346999987665


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +.     ..+..++.+..+.|+++|+|+++..
T Consensus       100 Gg-----~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A          100 GG-----TLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             CH-----HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ch-----HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            43     4567889999999999999998764

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.47  E-value=3.5e-14  Score=126.71  Aligned_cols=122  Identities=11%  Similarity=0.063  Sum_probs=85.7

Q ss_pred             cHHHHHHHHhcccccC--CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         185 RTESYKSAILNNKSLF--NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~--~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      ....+...++..+...  ++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++.++++++++|+.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  126 (254)
T 2h00_A           47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK  126 (254)
T ss_dssp             HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence            3455555666555432  5679999999999999888874 346999999999 99999999999998777999999987


Q ss_pred             cc---ccCC---CceeEEEeccchhhhcch------------hhHHHHHHHHhcccCCCcEEEe
Q psy8709         261 DV---ELPV---ESVDIIISEWMGYFLLFE------------TMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       261 ~~---~~~~---~~fD~Iis~~~~~~l~~~------------~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +.   +++.   ++||+|+++++++....+            .....++.++.++|||||.+.+
T Consensus       127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          127 TLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             CSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             hhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            62   3332   589999999887643200            0122456777888888887653

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.46  E-value=8.1e-14  Score=118.88  Aligned_cols=112  Identities=15%  Similarity=0.077  Sum_probs=89.7

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      -+.+...+...+  .+..+|||+|||+|.++..++.. +..+|+|+|+|+ |++.+++++..+|...++++  .|.... 
T Consensus        36 ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-  110 (200)
T 3fzg_A           36 LNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-  110 (200)
T ss_dssp             HHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-
T ss_pred             HHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-
Confidence            366666666665  34679999999999999999884 445999999999 99999999999998667777  555544 


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      .+.++||+|++..+.|++   +..+..+..+.+.|+|||++|
T Consensus       111 ~~~~~~DvVLa~k~LHlL---~~~~~al~~v~~~L~pggvfI  149 (200)
T 3fzg_A          111 VYKGTYDVVFLLKMLPVL---KQQDVNILDFLQLFHTQNFVI  149 (200)
T ss_dssp             HTTSEEEEEEEETCHHHH---HHTTCCHHHHHHTCEEEEEEE
T ss_pred             CCCCCcChhhHhhHHHhh---hhhHHHHHHHHHHhCCCCEEE
Confidence            345889999998888887   444556668999999999766

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.46  E-value=2.4e-14  Score=124.61  Aligned_cols=111  Identities=13%  Similarity=0.018  Sum_probs=82.9

Q ss_pred             ccccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHH----hcCCCCcEEEEEcCccccccCCCce
Q psy8709         196 NKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIR----KNKYDSQIEVYHKLLEDVELPVESV  269 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~----~~g~~~~i~~i~~d~~~~~~~~~~f  269 (319)
                      .+...++.+|||+|||+|.++..+++.. ..+|+|+|+|+ |++.+.+.++    ..+. ++++++++|+.+++++.+. 
T Consensus        22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-   99 (218)
T 3mq2_A           22 QLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-   99 (218)
T ss_dssp             HHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-
T ss_pred             HhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-
Confidence            3345677899999999999999999963 56999999999 8886544433    3444 5899999999998877666 


Q ss_pred             eEEEeccchhhhc--chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         270 DIIISEWMGYFLL--FETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       270 D~Iis~~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      |.|+.........  +..+...+++++.++|||||.++++.
T Consensus       100 d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          100 GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence            7777433222111  22334789999999999999999854

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.46  E-value=1.1e-13  Score=131.78  Aligned_cols=114  Identities=20%  Similarity=0.130  Sum_probs=95.7

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc----CCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL----PVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~----~~~~fD~Iis~  275 (319)
                      ++.+|||+|||+|.++..+++.|..+|+|+|+++ +++.|++++..+++.++++++.+|+.+...    +.++||+|+++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d  296 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  296 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence            6789999999999999999998777999999999 999999999999986589999999977532    24689999999


Q ss_pred             cchhhhc------chhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         276 WMGYFLL------FETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       276 ~~~~~l~------~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                      ++.+...      .......++..+.++|+|||.+++.+|+....
T Consensus       297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~  341 (396)
T 2as0_A          297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD  341 (396)
T ss_dssp             CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCC
Confidence            8753211      12456788999999999999999998876543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.46  E-value=2.3e-13  Score=129.70  Aligned_cols=115  Identities=16%  Similarity=0.096  Sum_probs=96.3

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC-CCcEEEEEcCcccccc----CCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY-DSQIEVYHKLLEDVEL----PVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~-~~~i~~i~~d~~~~~~----~~~~fD~Ii  273 (319)
                      .++.+|||+|||+|.++..+++.|+.+|+|+|+++ +++.|+++++.+++ .++++++.+|+.+...    ..++||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            46789999999999999999998877999999999 99999999999998 6689999999987532    146899999


Q ss_pred             eccchhhh------cchhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         274 SEWMGYFL------LFETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       274 s~~~~~~l------~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                      ++++.+..      .....+..++..+.+.|+|||++++++++..+.
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  345 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT  345 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC
Confidence            99875321      112457788999999999999999998876543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.46  E-value=1.6e-13  Score=125.10  Aligned_cols=105  Identities=11%  Similarity=0.152  Sum_probs=79.8

Q ss_pred             CCCcceeeccCCCchHHHHHH----H-cCCCEE--EEEecHH-HHHHHHHHHHhc-CCCCcEE--EEEcCccccc-----
Q psy8709         200 FNNKHVIDVGAGTGILSIFAA----Q-AGAAKV--FAIEKSD-IAYETIDIIRKN-KYDSQIE--VYHKLLEDVE-----  263 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la----~-~g~~~V--~gvD~s~-~i~~a~~~~~~~-g~~~~i~--~i~~d~~~~~-----  263 (319)
                      .++.+|||||||+|.++..++    . .+...|  +|+|+|+ |++.|++++... ++ .++.  +..+++++++     
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcc
Confidence            456799999999997765332    2 233444  9999999 999999988754 33 4454  4566665543     


Q ss_pred             -cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         264 -LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       264 -~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                       +++++||+|++..+.|++   .++..++++++++|||||++++..
T Consensus       130 ~~~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TTCCCCEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCCceeEEEEeeeeeec---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence             356899999998888877   667899999999999999999753

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.46  E-value=4.2e-14  Score=125.96  Aligned_cols=108  Identities=16%  Similarity=0.179  Sum_probs=90.1

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC------CCc
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP------VES  268 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~------~~~  268 (319)
                      ...++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|+.+....      .++
T Consensus        57 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~  136 (242)
T 3r3h_A           57 RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQ  136 (242)
T ss_dssp             HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred             hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence            3445689999999999999999984 2 56999999999 9999999999999978999999999765321      378


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ||+|+++..      ......+++.+.++|+|||+++++...+
T Consensus       137 fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~  173 (242)
T 3r3h_A          137 FDFIFIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFW  173 (242)
T ss_dssp             EEEEEEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred             EeEEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence            999998654      2456678999999999999999876554

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.45  E-value=4.7e-13  Score=121.69  Aligned_cols=120  Identities=20%  Similarity=0.243  Sum_probs=90.6

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEec-HH-HHHHHHHHH-----HhcCCC----CcEE
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK-SD-IAYETIDII-----RKNKYD----SQIE  253 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~-s~-~i~~a~~~~-----~~~g~~----~~i~  253 (319)
                      .+..+.+++.......++.+|||+|||+|.++..+++.+..+|+|+|+ ++ +++.+++++     +.+++.    ++++
T Consensus        63 ~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~  142 (281)
T 3bzb_A           63 GARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPK  142 (281)
T ss_dssp             HHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCE
T ss_pred             HHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeE
Confidence            456677777777666778899999999999999999987779999999 79 999999999     555543    4788


Q ss_pred             EEEcCcccc--cc----CCCceeEEEeccchhhhcchhhHHHHHHHHhcccC---C--CcEEEee
Q psy8709         254 VYHKLLEDV--EL----PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLK---P--DGVVCPN  307 (319)
Q Consensus       254 ~i~~d~~~~--~~----~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~Lk---p--gG~li~~  307 (319)
                      +...+..+.  .+    +.++||+|++..+.++   ......++..+.++|+   |  ||.+++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~---~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          143 VVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF---HQAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             EEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC---GGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             EEEecCCCccHHHHhhccCCCCCEEEEeCcccC---hHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence            886665432  11    3578999998555443   3678889999999999   9  9976653

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=8.4e-14  Score=123.24  Aligned_cols=105  Identities=12%  Similarity=-0.031  Sum_probs=86.6

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC-----CceeEE
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV-----ESVDII  272 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~-----~~fD~I  272 (319)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++..    ..+++++++|+.+.+.+.     ..||+|
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v  128 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANI  128 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEE
Confidence            45668999999999999999999876 999999999 9999987762    248999999998865431     249999


Q ss_pred             EeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +++.+.+++.. .....+++++.++|||||++++...
T Consensus       129 ~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          129 YMRTGFHHIPV-EKRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             EEESSSTTSCG-GGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             EEcchhhcCCH-HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99988877633 5678999999999999999776543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.45  E-value=1.7e-13  Score=118.65  Aligned_cols=105  Identities=16%  Similarity=0.153  Sum_probs=87.0

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-ccCCCceeEEEec
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-ELPVESVDIIISE  275 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~~~~~~fD~Iis~  275 (319)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|+.+. +...+ ||+|+++
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~  133 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD  133 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence            35579999999999999999985 3 46999999999 9999999999888877899999999764 33335 9999986


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ..      ......+++++.++|+|||+++++...+
T Consensus       134 ~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~  163 (210)
T 3c3p_A          134 CD------VFNGADVLERMNRCLAKNALLIAVNALR  163 (210)
T ss_dssp             TT------TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred             CC------hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence            42      1456788999999999999999876543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.45  E-value=1.7e-13  Score=124.11  Aligned_cols=110  Identities=15%  Similarity=0.210  Sum_probs=89.5

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhc-CCCCcEEEEEcCccccccCCC
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKN-KYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~-g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      .+...+...++.+|||+|||+|.++..+++.  +..+|+|+|+++ +++.+++++..+ +. ++++++.+|+.+ .++.+
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~~~~~  178 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-FISDQ  178 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-CCCSC
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-cCcCC
Confidence            4555667778889999999999999999986  356999999999 999999999887 75 689999999987 45567


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +||+|+++.+        ....+++++.++|||||++++..++.
T Consensus       179 ~fD~Vi~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          179 MYDAVIADIP--------DPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             CEEEEEECCS--------CGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             CccEEEEcCc--------CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            8999998543        23578889999999999999887764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.45  E-value=2.6e-13  Score=120.73  Aligned_cols=112  Identities=23%  Similarity=0.246  Sum_probs=94.0

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhc-CCCCcEEEEEcCccccccCC
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKN-KYDSQIEVYHKLLEDVELPV  266 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~-g~~~~i~~i~~d~~~~~~~~  266 (319)
                      ..++..+...++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.+++++..+ + .++++++.+|+.+.+++.
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~  164 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEE  164 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCT
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCC
Confidence            45666667788899999999999999999986 4 56999999999 999999999887 7 478999999999876776


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ++||+|++++.        ....++.++.++|+|||.+++...+.
T Consensus       165 ~~~D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          165 AAYDGVALDLM--------EPWKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             TCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             CCcCEEEECCc--------CHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            78999998543        23467888999999999999876553

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.45  E-value=4.3e-13  Score=121.66  Aligned_cols=107  Identities=17%  Similarity=0.210  Sum_probs=87.4

Q ss_pred             CCcceeeccCCC---chHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----------c
Q psy8709         201 NNKHVIDVGAGT---GILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----------L  264 (319)
Q Consensus       201 ~~~~VLDiGcGt---G~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----------~  264 (319)
                      ...+|||+|||+   |.++..+.+. +..+|+++|+|+ |++.|++++...   .+++++.+|+.+..           +
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~  153 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMI  153 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccC
Confidence            347999999999   9887766663 446999999999 999999887432   58999999997632           3


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +..+||+|+++.++|++..+ ....+++++.+.|+|||+|+++..+.
T Consensus       154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            33589999999988887554 68899999999999999999887653

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.45  E-value=1.6e-13  Score=121.44  Aligned_cols=113  Identities=13%  Similarity=0.175  Sum_probs=90.0

Q ss_pred             HHHHHHHh---cccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         187 ESYKSAIL---NNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       187 ~~~~~~i~---~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      .++...++   ..+.+.+|.+|||+|||+|.++..+++.  +.++|+|+|+++ |++.+++++...   .++..+.+|..
T Consensus        60 sklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~  136 (233)
T 4df3_A           60 SKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDAR  136 (233)
T ss_dssp             CHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTT
T ss_pred             hHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEecc
Confidence            34444554   3467899999999999999999999984  457999999999 999998876554   57888988886


Q ss_pred             cc---ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         261 DV---ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       261 ~~---~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ..   +...+++|+|++....+     .....++.++.+.|||||.+++.
T Consensus       137 ~p~~~~~~~~~vDvVf~d~~~~-----~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          137 FPEKYRHLVEGVDGLYADVAQP-----EQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             CGGGGTTTCCCEEEEEECCCCT-----THHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccccccccceEEEEEEeccCC-----hhHHHHHHHHHHhccCCCEEEEE
Confidence            54   34467899999865422     45678899999999999999875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.45  E-value=5.6e-13  Score=123.71  Aligned_cols=114  Identities=15%  Similarity=-0.000  Sum_probs=93.9

Q ss_pred             HhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCcee
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVD  270 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD  270 (319)
                      +...++..+..+|||+|||+|.++..+++. +..+++++|+ + +++.+++++...++.++++++.+|+. .++|. +||
T Consensus       161 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D  237 (332)
T 3i53_A          161 IAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAG  237 (332)
T ss_dssp             GGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCS
T ss_pred             HHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCc
Confidence            344445555679999999999999999884 5569999999 7 99999999998888789999999997 35554 899


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +|++..+.|++.. +....+++++++.|+|||++++....
T Consensus       238 ~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~  276 (332)
T 3i53_A          238 GYVLSAVLHDWDD-LSAVAILRRCAEAAGSGGVVLVIEAV  276 (332)
T ss_dssp             EEEEESCGGGSCH-HHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             EEEEehhhccCCH-HHHHHHHHHHHHhcCCCCEEEEEeec
Confidence            9999888776533 44688999999999999999976543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.44  E-value=7.3e-13  Score=122.64  Aligned_cols=117  Identities=15%  Similarity=0.159  Sum_probs=95.6

Q ss_pred             HHhccccc--CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         192 AILNNKSL--FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       192 ~i~~~l~~--~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      .++..++.  .++.+|||+|||+|.++..+++. +..+++++|++.+++.+++++...++.++++++.+|+.+.+++ +.
T Consensus       154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~  232 (335)
T 2r3s_A          154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYG-ND  232 (335)
T ss_dssp             HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCC-SC
T ss_pred             HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CC
Confidence            44444555  66789999999999999999885 4559999999998999999998888877899999999887666 34


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ||+|++..+.|++ .......+++++.+.|+|||++++....
T Consensus       233 ~D~v~~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          233 YDLVLLPNFLHHF-DVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             EEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CcEEEEcchhccC-CHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence            9999997776654 3355678999999999999988865543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.44  E-value=4.8e-13  Score=117.15  Aligned_cols=113  Identities=25%  Similarity=0.288  Sum_probs=88.8

Q ss_pred             HHHHHHH---hcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         187 ESYKSAI---LNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       187 ~~~~~~i---~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      ..+...+   +..+...++.+|||+|||+|.++..+++. + ..+|+|+|+++ +++.+.++++.+   .+++++.+|+.
T Consensus        56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~  132 (227)
T 1g8a_A           56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDAT  132 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTT
T ss_pred             hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCC
Confidence            4445666   44455777889999999999999999985 3 36999999999 999998887655   58999999998


Q ss_pred             ccc---cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         261 DVE---LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       261 ~~~---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +..   ...++||+|+++.+     .......++.++.++|||||.+++.
T Consensus       133 ~~~~~~~~~~~~D~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          133 KPEEYRALVPKVDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CGGGGTTTCCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcchhhcccCCceEEEECCC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            742   12368999998765     2233445699999999999999986

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.44  E-value=3.7e-13  Score=117.70  Aligned_cols=113  Identities=21%  Similarity=0.202  Sum_probs=88.8

Q ss_pred             HHHHhcccc--cCCCcceeeccCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHhcCC----CCcEEEEEcCcc
Q psy8709         190 KSAILNNKS--LFNNKHVIDVGAGTGILSIFAAQA-GA-AKVFAIEKSD-IAYETIDIIRKNKY----DSQIEVYHKLLE  260 (319)
Q Consensus       190 ~~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s~-~i~~a~~~~~~~g~----~~~i~~i~~d~~  260 (319)
                      ...++..+.  ..++.+|||+|||+|.++..+++. +. .+|+++|+++ +++.+++++...+.    .++++++.+|+.
T Consensus        64 ~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  143 (226)
T 1i1n_A           64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  143 (226)
T ss_dssp             HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             HHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcc
Confidence            334444443  567789999999999999999885 33 5999999999 99999999887654    368999999998


Q ss_pred             ccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       261 ~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ....+.++||+|+++.+.+.         ++.++.++|||||+++++.++.
T Consensus       144 ~~~~~~~~fD~i~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          144 MGYAEEAPYDAIHVGAAAPV---------VPQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             GCCGGGCCEEEEEECSBBSS---------CCHHHHHTEEEEEEEEEEESCT
T ss_pred             cCcccCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEecC
Confidence            66555578999998776432         2356788999999999987764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.44  E-value=4.7e-13  Score=128.52  Aligned_cols=117  Identities=16%  Similarity=0.153  Sum_probs=92.2

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHH-------HHHHHhcCCC-CcEEEEE
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYET-------IDIIRKNKYD-SQIEVYH  256 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a-------~~~~~~~g~~-~~i~~i~  256 (319)
                      ..+...++..+...++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|       ++++...|+. .+++++.
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~  307 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  307 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence            345556666677778899999999999999999984 667899999999 99888       8888888853 6899999


Q ss_pred             cCcccc--cc--CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         257 KLLEDV--EL--PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       257 ~d~~~~--~~--~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +|....  ++  ..++||+|+++...+    ...+..+|.++.+.|||||.+++.
T Consensus       308 gD~~~~~~~~~~~~~~FDvIvvn~~l~----~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          308 KKSFVDNNRVAELIPQCDVILVNNFLF----DEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCTTC----CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cCccccccccccccCCCCEEEEeCccc----cccHHHHHHHHHHhCCCCeEEEEe
Confidence            764421  11  236899999865431    256778899999999999999976

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.44  E-value=2.4e-13  Score=118.30  Aligned_cols=106  Identities=22%  Similarity=0.218  Sum_probs=85.2

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc--cccCCCc
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED--VELPVES  268 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~--~~~~~~~  268 (319)
                      .+...+. .++.+|||+|||+|.++..+++.+ .+++|+|+++ +++.++++.        .+++.+|+.+  .+++.++
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~   93 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQ   93 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTC
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCc
Confidence            4444444 567899999999999999999986 6999999999 877776432        2688899876  4556689


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ||+|++..+.+++   .+...++.++.++|+|||.++++..+
T Consensus        94 fD~v~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           94 FDCVIFGDVLEHL---FDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             EEEEEEESCGGGS---SCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             cCEEEECChhhhc---CCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            9999998777665   45578999999999999999987644

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.43  E-value=1.4e-12  Score=123.07  Aligned_cols=117  Identities=13%  Similarity=0.141  Sum_probs=96.5

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      ...+...++..+..+|||+|||+|.++..+++. +..+++++|+ + +++.+++++...++.++++++.+|+. .++|. 
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-  267 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-  267 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-
Confidence            345555566667789999999999999999885 4569999999 7 99999999999888889999999998 45554 


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .||+|++..+.|++. ......+++++++.|+|||++++....
T Consensus       268 ~~D~v~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~  309 (369)
T 3gwz_A          268 GADVYLIKHVLHDWD-DDDVVRILRRIATAMKPDSRLLVIDNL  309 (369)
T ss_dssp             SCSEEEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred             CceEEEhhhhhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            899999988877653 344568999999999999999976543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.43  E-value=5.5e-13  Score=125.57  Aligned_cols=107  Identities=15%  Similarity=0.069  Sum_probs=90.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEec
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIISE  275 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis~  275 (319)
                      ....+|||||||+|.++..+++. +..+++++|+ + +++.|++++...++.++++++.+|+.+.  ++| ++||+|++.
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~  255 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS  255 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence            35579999999999999999884 4569999999 7 9999999998888778999999999886  355 789999998


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .+.|++. .+....+++++++.|+|||++++...
T Consensus       256 ~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (363)
T 3dp7_A          256 QFLDCFS-EEEVISILTRVAQSIGKDSKVYIMET  288 (363)
T ss_dssp             SCSTTSC-HHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             chhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEee
Confidence            8776543 35567899999999999999987553

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.43  E-value=9.6e-13  Score=123.87  Aligned_cols=115  Identities=17%  Similarity=0.114  Sum_probs=94.0

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      +.++..+...++.+|||+|||+|.++..+++. +..+++++|+ + +++.+++++...++.++++++.+|+.+ +++ ..
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~  248 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VT  248 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CC
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC-CC
Confidence            34445556667789999999999999999985 3459999999 8 999999999988887799999999976 445 34


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ||+|++..+.|++.. .....+++++.+.|+|||++++...
T Consensus       249 ~D~v~~~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          249 ADVVLLSFVLLNWSD-EDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEEeccccCCCH-HHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999888776532 3446899999999999999887654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.43  E-value=2.6e-13  Score=138.08  Aligned_cols=111  Identities=14%  Similarity=0.086  Sum_probs=95.3

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCcccc-ccCCCceeEEEeccc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDV-ELPVESVDIIISEWM  277 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~-~~~~~~fD~Iis~~~  277 (319)
                      ++++|||+|||+|.++..++..|+.+|+++|+|+ +++.|+++++.+++. ++++++++|+.+. +...++||+|+++++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP  618 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP  618 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence            5789999999999999999998888899999999 999999999999986 5899999999874 333478999999987


Q ss_pred             hhh--------hcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         278 GYF--------LLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       278 ~~~--------l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .+.        +........++..+.++|+|||+++++++..
T Consensus       619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence            532        1223567888999999999999999998873

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.43  E-value=3.4e-13  Score=119.05  Aligned_cols=115  Identities=15%  Similarity=0.132  Sum_probs=90.7

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ...+...+++.+...++.+|||+|||+|.++..+++.+..+|+++|+++ +++.|++++...++ .+++++.+|+. .++
T Consensus        76 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~-~~~  153 (235)
T 1jg1_A           76 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGS-KGF  153 (235)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGG-GCC
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEECCcc-cCC
Confidence            3455566666667778889999999999999999986326999999999 99999999998887 46999999983 333


Q ss_pred             CC-CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         265 PV-ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       265 ~~-~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +. .+||+|++....+++.         .++.+.|+|||++++...+.
T Consensus       154 ~~~~~fD~Ii~~~~~~~~~---------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          154 PPKAPYDVIIVTAGAPKIP---------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             GGGCCEEEEEECSBBSSCC---------HHHHHTEEEEEEEEEEECSS
T ss_pred             CCCCCccEEEECCcHHHHH---------HHHHHhcCCCcEEEEEEecC
Confidence            33 4599999887654432         25678999999999877653

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.43  E-value=3.8e-13  Score=121.43  Aligned_cols=115  Identities=25%  Similarity=0.295  Sum_probs=95.0

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhc-C-CCCcEEEEEcCccccc
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKN-K-YDSQIEVYHKLLEDVE  263 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~-g-~~~~i~~i~~d~~~~~  263 (319)
                      ....++..+...++.+|||+|||+|.++..+++.  +..+|+++|+++ +++.|++++..+ + +.++++++.+|+.+.+
T Consensus        87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            4456666677788899999999999999999984  356999999999 999999998877 4 4478999999999887


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ++.++||+|+++..        ....++.++.++|+|||.+++...+.
T Consensus       167 ~~~~~~D~v~~~~~--------~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          167 LPDGSVDRAVLDML--------APWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             CCTTCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CCCCceeEEEECCc--------CHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            76788999998543        22367888999999999999877653

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.43  E-value=2.3e-13  Score=121.50  Aligned_cols=107  Identities=20%  Similarity=0.191  Sum_probs=88.7

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-c-c-----CCCc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-E-L-----PVES  268 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~-~-----~~~~  268 (319)
                      ..++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|+.+. + +     +.++
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            345679999999999999999985 3 46999999999 9999999999998877899999998764 2 2     1478


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ||+|+++..      ......++..+.++|+|||+++++...+
T Consensus       157 fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~  193 (247)
T 1sui_A          157 YDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_dssp             BSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred             EEEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence            999998653      1346788999999999999999876443

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.43  E-value=3e-13  Score=119.63  Aligned_cols=114  Identities=17%  Similarity=0.188  Sum_probs=90.9

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-c-c--
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-E-L--  264 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~-~--  264 (319)
                      .+...+...++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|++++...+..++++++.+|+.+. + +  
T Consensus        51 ~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  130 (239)
T 2hnk_A           51 FLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLID  130 (239)
T ss_dssp             HHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHh
Confidence            3333344556789999999999999999986 3 46999999999 9999999999988866799999998653 1 1  


Q ss_pred             -----------C-C-CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         265 -----------P-V-ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       265 -----------~-~-~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                                 + . ++||+|+++..      ......++..+.++|+|||+++++...+
T Consensus       131 ~~~~~~~~~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~  184 (239)
T 2hnk_A          131 SKSAPSWASDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADNVLW  184 (239)
T ss_dssp             CSSCCGGGTTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             hcccccccccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence                       1 1 68999998743      2455688999999999999999876543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.42  E-value=7e-13  Score=123.88  Aligned_cols=116  Identities=15%  Similarity=0.188  Sum_probs=96.2

Q ss_pred             HHhcccccCC-CcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCC
Q psy8709         192 AILNNKSLFN-NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVE  267 (319)
Q Consensus       192 ~i~~~l~~~~-~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~  267 (319)
                      .++..++..+ +.+|||+|||+|.++..+++. +..+++++|+..+++.+++++...++.++++++.+|+.+.+  .+ +
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~  247 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG-G  247 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT-C
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC-C
Confidence            4555566666 789999999999999999885 45699999993399999999998888788999999998876  44 6


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .||+|++..+.|++ .......+++++++.|+|||++++...
T Consensus       248 ~~D~v~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (352)
T 3mcz_A          248 AADVVMLNDCLHYF-DAREAREVIGHAAGLVKPGGALLILTM  288 (352)
T ss_dssp             CEEEEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CccEEEEecccccC-CHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            79999998887765 334568999999999999999987653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.42  E-value=1.2e-13  Score=121.19  Aligned_cols=90  Identities=18%  Similarity=0.110  Sum_probs=76.5

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc-cccccC-CCceeEEEecc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL-EDVELP-VESVDIIISEW  276 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~-~~~~~~-~~~fD~Iis~~  276 (319)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.++++      ..+++++++|+ ..++++ .++||+|+++.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~  119 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLGAPFGLIVSRR  119 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEEEEES
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCCCCEEEEEeCC
Confidence            4568999999999999999999865 999999999 99988876      25799999999 556666 78999999862


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                               ++..++.++.++|||||.++
T Consensus       120 ---------~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          120 ---------GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             ---------CCSGGGGGHHHHEEEEEEEE
T ss_pred             ---------CHHHHHHHHHHHcCCCcEEE
Confidence                     34567788899999999998

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.42  E-value=6.9e-13  Score=117.30  Aligned_cols=110  Identities=16%  Similarity=0.179  Sum_probs=92.0

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCcee
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVD  270 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD  270 (319)
                      .+...+...++.+|||+|||+|.++..+++. ..+|+++|+++ +++.|+++...+++.++++++.+|+.+...+.++||
T Consensus        82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  160 (248)
T 2yvl_A           82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFH  160 (248)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBS
T ss_pred             HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCccc
Confidence            4455556678889999999999999999988 56999999999 999999999988887789999999987543557899


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +|+++..        ....++.++.++|+|||.+++...+
T Consensus       161 ~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          161 AAFVDVR--------EPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             EEEECSS--------CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             EEEECCc--------CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            9998643        2345678889999999999987764

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.42  E-value=1.4e-12  Score=122.36  Aligned_cols=115  Identities=13%  Similarity=0.072  Sum_probs=95.1

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      .+.++..+...++.+|||+|||+|.++..+++. +..+++++|+ + +++.+++++...++.++++++.+|+.+.+++  
T Consensus       179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--  255 (359)
T 1x19_A          179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--  255 (359)
T ss_dssp             HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC--
T ss_pred             HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC--
Confidence            344555566677789999999999999999985 4559999999 8 9999999999888877899999999887655  


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .+|+|++..+.|++. .+....+++++.+.|+|||++++..
T Consensus       256 ~~D~v~~~~vlh~~~-d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          256 EADAVLFCRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             CCSEEEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCEEEEechhccCC-HHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            349999988777653 2457899999999999999997654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.42  E-value=3.8e-13  Score=121.67  Aligned_cols=112  Identities=23%  Similarity=0.203  Sum_probs=93.4

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      ..++..+...++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|+.+. ++.+
T Consensus       102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~  180 (277)
T 1o54_A          102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEK  180 (277)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCC
T ss_pred             HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCC
Confidence            34555566778889999999999999999986 4 56999999999 9999999999888767899999999876 5557


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +||+|+++++        ....++.++.++|+|||.+++..++.
T Consensus       181 ~~D~V~~~~~--------~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (277)
T 1o54_A          181 DVDALFLDVP--------DPWNYIDKCWEALKGGGRFATVCPTT  216 (277)
T ss_dssp             SEEEEEECCS--------CGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             ccCEEEECCc--------CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            8999998653        22467888899999999999877653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.41  E-value=6.4e-13  Score=117.77  Aligned_cols=108  Identities=20%  Similarity=0.166  Sum_probs=89.7

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-c-c-----CCCc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-E-L-----PVES  268 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~-~-----~~~~  268 (319)
                      ..++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|+.+. + +     +.++
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            345679999999999999999985 3 56999999999 9999999999999877899999998764 1 2     1478


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ||+|+++..      ......+++.+.++|+|||+++++.+.+.
T Consensus       148 fD~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~~~~~  185 (237)
T 3c3y_A          148 YDFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDNTLWG  185 (237)
T ss_dssp             EEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECTTGG
T ss_pred             cCEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEecCCcC
Confidence            999998643      24567889999999999999999876543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.41  E-value=1.8e-13  Score=115.13  Aligned_cols=97  Identities=16%  Similarity=0.074  Sum_probs=76.5

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||+|||+|.++..+++.+  +|+|+|+|+ +++.          ..+++++++|+.+ +++.++||+|++++++
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~   88 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQESVDVVVFNPPY   88 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCGGGCSEEEECCCC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----------ccCCeEEECChhh-hcccCCCCEEEECCCC
Confidence            456799999999999999999987  999999999 7765          2578999999987 4555899999999887


Q ss_pred             hhhcch------hhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         279 YFLLFE------TMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       279 ~~l~~~------~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++....      .....++.++.+.| |||.+++....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~  125 (170)
T 3q87_B           89 VPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE  125 (170)
T ss_dssp             BTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred             ccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence            753221      12345677777777 99999986543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.41  E-value=9.5e-13  Score=124.51  Aligned_cols=119  Identities=17%  Similarity=0.082  Sum_probs=94.9

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA-AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      .+.+...++... ..++.+|||+|||+|.++..++..+. .+|+|+|+++ +++.|++++..+|+.++++++++|+.+++
T Consensus       203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~  281 (373)
T 3tm4_A          203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS  281 (373)
T ss_dssp             CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG
T ss_pred             cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence            456666666666 67788999999999999999999754 4899999999 99999999999998789999999999988


Q ss_pred             cCCCceeEEEeccchhhhcc-----hhhHHHHHHHHhcccCCCcEEEe
Q psy8709         264 LPVESVDIIISEWMGYFLLF-----ETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~-----~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      .+.++||+|++|+++.....     ......+++.+.++| +|+.+++
T Consensus       282 ~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          282 QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            77789999999988553221     122477888999988 4433333

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.41  E-value=5.1e-13  Score=116.89  Aligned_cols=103  Identities=19%  Similarity=0.216  Sum_probs=84.4

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHhcCC----CCcEEEEEcCccccc---
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQAG------AAKVFAIEKSD-IAYETIDIIRKNKY----DSQIEVYHKLLEDVE---  263 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~g------~~~V~gvD~s~-~i~~a~~~~~~~g~----~~~i~~i~~d~~~~~---  263 (319)
                      ...++.+|||+|||+|.++..+++..      ..+|+++|+++ +++.|++++...++    ..+++++.+|+.+..   
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  156 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE  156 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence            35667899999999999999999863      25999999999 99999999988773    368999999998754   


Q ss_pred             -cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         264 -LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       264 -~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                       .+.++||+|+++...+.         ++..+.++|+|||++++...
T Consensus       157 ~~~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          157 KKELGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEEE
T ss_pred             CccCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEc
Confidence             44578999998876543         23667889999999997754

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.40  E-value=8.8e-13  Score=122.70  Aligned_cols=113  Identities=17%  Similarity=0.275  Sum_probs=86.5

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHhcC----------CCCcEEEEE
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GA-AKVFAIEKSD-IAYETIDIIRKNK----------YDSQIEVYH  256 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s~-~i~~a~~~~~~~g----------~~~~i~~i~  256 (319)
                      ...++..+...++.+|||+|||+|.++..+++. |. .+|+|+|+++ +++.|++++...+          ...+++++.
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            444555567778899999999999999999986 54 7999999999 9999999987532          236899999


Q ss_pred             cCcccc--ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         257 KLLEDV--ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       257 ~d~~~~--~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +|+.+.  +++.++||+|+++....        ..++.++.++|+|||.+++...+
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~~~~~--------~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALDMLNP--------HVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             SCTTCCC-------EEEEEECSSST--------TTTHHHHGGGEEEEEEEEEEESS
T ss_pred             CChHHcccccCCCCeeEEEECCCCH--------HHHHHHHHHhcCCCcEEEEEeCC
Confidence            999876  44556899999875432        22678899999999999965543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.40  E-value=5.2e-13  Score=116.90  Aligned_cols=107  Identities=19%  Similarity=0.231  Sum_probs=88.7

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCC----Cc
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPV----ES  268 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~----~~  268 (319)
                      ...++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|++++..+++.++++++.+|+.+.  .++.    ++
T Consensus        66 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~  145 (229)
T 2avd_A           66 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT  145 (229)
T ss_dssp             HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence            3456689999999999999999985 3 56999999999 9999999999998878999999998654  2221    68


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ||+|+++..      ......++..+.++|+|||+++++...
T Consensus       146 ~D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          146 FDVAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             EEEEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             ccEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            999998764      244567899999999999999987654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.40  E-value=1.2e-12  Score=122.23  Aligned_cols=101  Identities=22%  Similarity=0.222  Sum_probs=87.4

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||+|||+|.++.. ++ +..+|+|+|+|+ +++.++++++.+++.++++++++|+.+..   ++||+|+++++.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~  268 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK  268 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence            4678999999999999999 87 577999999999 99999999999998778999999998765   789999998764


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      +.       ..++..+.++|+|||.+++..++..
T Consensus       269 ~~-------~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          269 FA-------HKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             TG-------GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             hH-------HHHHHHHHHHcCCCCEEEEEEeecC
Confidence            32       2677888899999999998776543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.40  E-value=1.9e-12  Score=114.55  Aligned_cols=114  Identities=19%  Similarity=0.191  Sum_probs=85.0

Q ss_pred             HHHHHHHHhccc---ccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709         186 TESYKSAILNNK---SLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL  259 (319)
Q Consensus       186 ~~~~~~~i~~~l---~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~  259 (319)
                      ...+...++..+   .+.++.+|||+|||+|.++..+++.  +.++|+|+|+++ +++...+..+..   .++.++.+|+
T Consensus        58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da  134 (232)
T 3id6_C           58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADA  134 (232)
T ss_dssp             TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCT
T ss_pred             HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEccc
Confidence            345555555554   4788999999999999999999884  356999999999 876666555543   5899999999


Q ss_pred             ccccc---CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         260 EDVEL---PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       260 ~~~~~---~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .....   ..++||+|+++.+.     ......++..+.++|||||+|+++
T Consensus       135 ~~~~~~~~~~~~~D~I~~d~a~-----~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          135 RFPQSYKSVVENVDVLYVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             TCGGGTTTTCCCEEEEEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhhccccceEEEEecCCC-----hhHHHHHHHHHHHhCCCCeEEEEE
Confidence            76431   13689999998653     123334455666799999999977

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.40  E-value=9.5e-13  Score=116.18  Aligned_cols=108  Identities=12%  Similarity=0.110  Sum_probs=88.9

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc----ccCC--Cce
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV----ELPV--ESV  269 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~----~~~~--~~f  269 (319)
                      ..++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+.    +.+.  ++|
T Consensus        70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF  149 (232)
T ss_dssp             HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred             hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            345679999999999999999985 3 45999999999 9999999999888877899999998653    1222  689


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      |+|+++..      ......++.++.++|+|||+++++...+.
T Consensus       150 D~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  186 (232)
T 3cbg_A          150 DLIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWH  186 (232)
T ss_dssp             EEEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred             CEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence            99998654      14567889999999999999999876654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.39  E-value=5.9e-13  Score=126.29  Aligned_cols=112  Identities=15%  Similarity=0.121  Sum_probs=93.3

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc----CCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL----PVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~----~~~~fD~Iis~  275 (319)
                      ++.+|||+|||+|.++..+++. ..+|+|+|+++ +++.|++++..+++. +++++.+|+.+...    ..++||+|+++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            6789999999999999999988 66999999999 999999999999984 59999999987632    14689999999


Q ss_pred             cchhhhc------chhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         276 WMGYFLL------FETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       276 ~~~~~l~------~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                      ++.+...      .......++..+.++|+|||++++++++....
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  331 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT  331 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC
Confidence            8753321      12456778999999999999999998876543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.39  E-value=2.1e-12  Score=121.04  Aligned_cols=115  Identities=17%  Similarity=0.210  Sum_probs=93.3

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV  269 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f  269 (319)
                      .+++.+...++.+|||+|||+|.++..+++. +..+++++|+ + +++.+++++...++.++++++.+|+.+ +++ ..|
T Consensus       174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~  250 (360)
T 1tw3_A          174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKA  250 (360)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCE
T ss_pred             HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC-CCc
Confidence            3444555667789999999999999999885 3459999999 8 999999999988887799999999976 445 359


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      |+|++..+.|++. ......+++++.+.|+|||++++....
T Consensus       251 D~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          251 DAIILSFVLLNWP-DHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cEEEEcccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            9999988776643 244568999999999999999876543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.39  E-value=1.2e-12  Score=116.52  Aligned_cols=108  Identities=16%  Similarity=0.144  Sum_probs=83.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhc--------CCCCcEEEEEcCccc-cc--cCC
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKN--------KYDSQIEVYHKLLED-VE--LPV  266 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~--------g~~~~i~~i~~d~~~-~~--~~~  266 (319)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.+++++..+        ++ .++.++.+|+.+ ++  ++.
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhccc
Confidence            456799999999999999999865 45899999999 999999988765        66 589999999987 44  556


Q ss_pred             CceeEEEeccchhhhcch-----hhHHHHHHHHhcccCCCcEEEeec
Q psy8709         267 ESVDIIISEWMGYFLLFE-----TMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +.+|.|+...+..+....     .....++.++.++|+|||.|++.+
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            789999865432211000     001478999999999999999854

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.39  E-value=5.4e-13  Score=121.68  Aligned_cols=115  Identities=17%  Similarity=0.202  Sum_probs=91.3

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ...+.+.+...+...++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.+++++...+..++++++.+|+.+.++
T Consensus        13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~   91 (285)
T 1zq9_A           13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL   91 (285)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc
Confidence            356677777777778888999999999999999999865 999999999 999999988777665689999999988766


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHH--------------HH--hcccCCCcEEE
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVID--------------AR--NRFLKPDGVVC  305 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~--------------~~--~r~LkpgG~li  305 (319)
                      +  +||+|+++.++++..  +.+..++.              ++  +++|+|||.++
T Consensus        92 ~--~fD~vv~nlpy~~~~--~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           92 P--FFDTCVANLPYQISS--PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             C--CCSEEEEECCGGGHH--HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             h--hhcEEEEecCcccch--HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            5  799999998877541  12223332              11  35899999874

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.39  E-value=1.8e-12  Score=123.43  Aligned_cols=110  Identities=14%  Similarity=0.078  Sum_probs=88.6

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEEEeccch
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDIIISEWMG  278 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~Iis~~~~  278 (319)
                      ++.+|||+|||+|.++..+++.|.. |+++|+|+ +++.|+++++.+++..  .+.++|+.+.. ...+.||+|+++++.
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~dpP~  290 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLLDPPT  290 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEECCCc
Confidence            4789999999999999999998774 99999999 9999999999999853  46689987752 112449999999875


Q ss_pred             hhhc------chhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         279 YFLL------FETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       279 ~~l~------~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      +.-.      .......++..+.++|+|||.+++.+|+...
T Consensus       291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~  331 (393)
T 4dmg_A          291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL  331 (393)
T ss_dssp             CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence            2211      1234578899999999999999988887654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.39  E-value=4e-13  Score=123.21  Aligned_cols=113  Identities=17%  Similarity=0.104  Sum_probs=85.4

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHh--cCC-CCcEEEEEcCcccc-ccCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRK--NKY-DSQIEVYHKLLEDV-ELPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~--~g~-~~~i~~i~~d~~~~-~~~~~~fD~Ii  273 (319)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..  +++ .++++++.+|+.+. +...++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            34579999999999999999987 567999999999 99999988754  233 36899999998764 33347899999


Q ss_pred             eccchhhhcchh--hHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         274 SEWMGYFLLFET--MIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       274 s~~~~~~l~~~~--~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ++.+..+.....  ....+++.+.++|+|||+++++.++.+
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~  209 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF  209 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcc
Confidence            976543221111  126789999999999999999877643

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.39  E-value=9.3e-14  Score=132.90  Aligned_cols=116  Identities=16%  Similarity=0.247  Sum_probs=90.3

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEE-EEEcCcccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIE-VYHKLLEDVEL  264 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~-~i~~d~~~~~~  264 (319)
                      ..+.+.++..+...++.+|||+|||+|.++..+++.+. +|+|+|+|+ +++.|+++    +...... +...+...+++
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~  167 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRR  167 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhccc
Confidence            45566677777777888999999999999999999876 999999999 88877754    3321111 22344444555


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.++||+|++..+++++   .++..++++++++|||||+++++...
T Consensus       168 ~~~~fD~I~~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          168 TEGPANVIYAANTLCHI---PYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             HHCCEEEEEEESCGGGC---TTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEECChHHhc---CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            66899999998887776   57889999999999999999987543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.39  E-value=1.8e-12  Score=125.63  Aligned_cols=120  Identities=13%  Similarity=0.094  Sum_probs=95.6

Q ss_pred             HhcccccCCCcceeeccCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCC
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GA-AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVE  267 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~  267 (319)
                      +...+...++.+|||+|||+|..+..++.. +. .+|+++|+++ +++.++++++..|+ .+++++++|+.+.+  ++.+
T Consensus       251 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~  329 (450)
T 2yxl_A          251 ASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPEIIGEE  329 (450)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCCSSSSCSS
T ss_pred             HHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhcchhhccC
Confidence            344456677889999999999999999984 33 6999999999 99999999999888 57999999998875  4446


Q ss_pred             ceeEEEeccchhhh---cch---------hh-------HHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         268 SVDIIISEWMGYFL---LFE---------TM-------IDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       268 ~fD~Iis~~~~~~l---~~~---------~~-------~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      +||+|+++++....   ...         ..       ...++..+.++|||||.+++++|++.-
T Consensus       330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~  394 (450)
T 2yxl_A          330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK  394 (450)
T ss_dssp             CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            89999986543211   111         11       167899999999999999999998763

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.38  E-value=5.7e-13  Score=116.16  Aligned_cols=93  Identities=19%  Similarity=0.225  Sum_probs=79.7

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF  280 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~  280 (319)
                      +.+|||+|||+|.++..+++.     +|+|+|+ +++.++++        +++++.+|+.+++++.++||+|++..+.++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  114 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF  114 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence            689999999999999887654     9999999 88887764        578999999988877789999999887766


Q ss_pred             hcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         281 LLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       281 l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +   .++..+++++.++|+|||.+++....
T Consensus       115 ~---~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A          115 V---DDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             S---SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             c---cCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence            5   55688999999999999999987543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.38  E-value=1.1e-12  Score=121.70  Aligned_cols=116  Identities=18%  Similarity=0.124  Sum_probs=93.8

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      ...+...++..+ .+|||+|||+|.++..+++. +..+++++|+ + +++.+++++...++.++++++.+|+.+ +++ +
T Consensus       157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~  232 (334)
T 2ip2_A          157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-S  232 (334)
T ss_dssp             HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-S
T ss_pred             HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-C
Confidence            344444455555 89999999999999999885 4569999999 8 999999988777766789999999987 555 6


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +||+|++..+.|++ .......+++++++.|+|||++++....
T Consensus       233 ~~D~v~~~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          233 NGDIYLLSRIIGDL-DEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             SCSEEEEESCGGGC-CHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CCCEEEEchhccCC-CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            79999998877654 2345568999999999999999977543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.38  E-value=4.3e-13  Score=118.16  Aligned_cols=106  Identities=15%  Similarity=0.042  Sum_probs=80.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecH-H-HHHHH---HHHHHhcCCCCcEEEEEcCccccccC-CCceeEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKS-D-IAYET---IDIIRKNKYDSQIEVYHKLLEDVELP-VESVDII  272 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~-~i~~a---~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~I  272 (319)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+| + |++.|   ++++...++ .++.++.+|+++++.. .+.+|.|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~~~~d~v~~i  101 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPFELKNIADSI  101 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCGGGTTCEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhhhccCeEEEE
Confidence            35679999999999999999863 45589999999 6 77666   766667777 5899999999987532 2667877


Q ss_pred             Eeccchhhhc--chhhHHHHHHHHhcccCCCcEEEe
Q psy8709         273 ISEWMGYFLL--FETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       273 is~~~~~~l~--~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +++.+.....  .......++.+++++|||||.+++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            7765433210  011235689999999999999998

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.38  E-value=8.7e-13  Score=127.80  Aligned_cols=115  Identities=13%  Similarity=0.062  Sum_probs=92.9

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEE
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDII  272 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~I  272 (319)
                      +...++.+|||+|||+|..+..+++.  +..+|+|+|+++ +++.++++++..|+.  +.++++|+.++. ...++||+|
T Consensus        97 L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~I  174 (464)
T 3m6w_A           97 LDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRV  174 (464)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEE
T ss_pred             cCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEE
Confidence            34567789999999999999999974  336999999999 999999999999984  999999998765 234789999


Q ss_pred             Eeccchhhhc------------ch-------hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         273 ISEWMGYFLL------------FE-------TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       273 is~~~~~~l~------------~~-------~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ++++++....            ..       .....++..+.++|||||+|++++|++..
T Consensus       175 l~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~  234 (464)
T 3m6w_A          175 LLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP  234 (464)
T ss_dssp             EEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             EECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence            9876532110            00       12377899999999999999999999763

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.37  E-value=1.3e-12  Score=127.32  Aligned_cols=111  Identities=19%  Similarity=0.087  Sum_probs=91.2

Q ss_pred             CCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc-CCCceeEEEecc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL-PVESVDIIISEW  276 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~-~~~~fD~Iis~~  276 (319)
                      ++.+|||+|||+|..+..+++.  +...|+|+|+++ +++.++++++..|+ .++.++++|+..+.. ..++||.|++++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-~nv~~~~~D~~~~~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-SNVALTHFDGRVFGAAVPEMFDAILLDA  195 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHhhhhccccCCEEEECC
Confidence            7789999999999999999984  346999999999 99999999999888 579999999988753 347899999976


Q ss_pred             chhhh---c-ch---------------hhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         277 MGYFL---L-FE---------------TMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       277 ~~~~l---~-~~---------------~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ++...   . ..               .....+|.++.++|||||+|++++|++.
T Consensus       196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred             CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence            53211   0 00               1135789999999999999999999975

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.37  E-value=1.2e-12  Score=126.63  Aligned_cols=116  Identities=16%  Similarity=0.005  Sum_probs=93.5

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEE
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDII  272 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~I  272 (319)
                      +...++.+|||+|||+|..+..++..  +..+|+++|+++ +++.++++++..|+ .++.++++|+.++. ...++||+|
T Consensus       101 L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~-~nv~v~~~Da~~l~~~~~~~FD~I  179 (456)
T 3m4x_A          101 AAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV-SNAIVTNHAPAELVPHFSGFFDRI  179 (456)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC-SSEEEECCCHHHHHHHHTTCEEEE
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhhhccccCCEE
Confidence            34567789999999999999999874  346999999999 99999999999998 57999999998764 234789999


Q ss_pred             Eeccchhhhc----ch---------------hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         273 ISEWMGYFLL----FE---------------TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       273 is~~~~~~l~----~~---------------~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ++++++....    +.               .....+|..+.++|||||+|++++||+..
T Consensus       180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  239 (456)
T 3m4x_A          180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP  239 (456)
T ss_dssp             EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred             EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence            9987632110    00               12247899999999999999999999863

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.36  E-value=2.5e-12  Score=121.61  Aligned_cols=105  Identities=14%  Similarity=0.154  Sum_probs=88.0

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc-ccc-CCCceeEEEec
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGA-AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED-VEL-PVESVDIIISE  275 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~-~~~-~~~~fD~Iis~  275 (319)
                      .++.+|||+| |+|.++..++..+. .+|+|+|+++ +++.|++++..+|+. +++++.+|+.+ ++. ..++||+|+++
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEEC
Confidence            4578999999 99999999998754 7999999999 999999999998885 89999999988 542 23689999999


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCc-EEEeecCc
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDG-VVCPNRFT  310 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG-~li~~~~t  310 (319)
                      ++++..    ....++.++.+.|+||| .++++.++
T Consensus       249 ~p~~~~----~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          249 PPETLE----AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CCSSHH----HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             CCCchH----HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            875543    25889999999999999 44666554

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.36  E-value=1e-12  Score=122.48  Aligned_cols=114  Identities=19%  Similarity=0.194  Sum_probs=88.3

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc--CC-CCcEEEEEcCcccc--ccCCCceeEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN--KY-DSQIEVYHKLLEDV--ELPVESVDII  272 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~--g~-~~~i~~i~~d~~~~--~~~~~~fD~I  272 (319)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++...  ++ .++++++.+|+.+.  ..+.++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            45679999999999999999986 457999999999 999999887642  33 35899999998765  2345789999


Q ss_pred             Eeccchhhhcchh-hHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         273 ISEWMGYFLLFET-MIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       273 is~~~~~~l~~~~-~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      +++....+..... ....+++.+.++|+|||+++++..+.+.
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~  240 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWL  240 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccc
Confidence            9976532211111 1468999999999999999998655544

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.35  E-value=9e-13  Score=121.28  Aligned_cols=111  Identities=14%  Similarity=0.150  Sum_probs=84.7

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHh---cCCCCcEEEEEcCcccccc--CCCceeEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRK---NKYDSQIEVYHKLLEDVEL--PVESVDII  272 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~---~g~~~~i~~i~~d~~~~~~--~~~~fD~I  272 (319)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++ +++.+++++..   .....+++++.+|+.+...  +.++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            45679999999999999999986 457999999999 99999987632   2223689999999987653  35789999


Q ss_pred             EeccchhhhcchhhH--HHHHHHHhcccCCCcEEEeecCcc
Q psy8709         273 ISEWMGYFLLFETMI--DSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       273 is~~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +++.+.+... ...+  ..+++.+.++|||||++++...+.
T Consensus       174 i~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  213 (304)
T 3bwc_A          174 IIDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQGESI  213 (304)
T ss_dssp             EEECC----------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             EECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            9987654321 1112  578999999999999999876543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.35  E-value=1.1e-12  Score=114.94  Aligned_cols=113  Identities=14%  Similarity=0.098  Sum_probs=86.9

Q ss_pred             HHHHHHhccc--ccCCCcceeeccCCCchHHHHHHHc-CC------CEEEEEecHH-HHHHHHHHHHhcCC----CCcEE
Q psy8709         188 SYKSAILNNK--SLFNNKHVIDVGAGTGILSIFAAQA-GA------AKVFAIEKSD-IAYETIDIIRKNKY----DSQIE  253 (319)
Q Consensus       188 ~~~~~i~~~l--~~~~~~~VLDiGcGtG~ls~~la~~-g~------~~V~gvD~s~-~i~~a~~~~~~~g~----~~~i~  253 (319)
                      .+...++..+  ...++.+|||+|||+|.++..+++. +.      .+|+++|+++ +++.+++++...+.    ..+++
T Consensus        69 ~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~  148 (227)
T 1r18_A           69 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL  148 (227)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceE
Confidence            3344444444  3566789999999999999999884 42      5999999999 99999998877651    25899


Q ss_pred             EEEcCccccccCC-CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         254 VYHKLLEDVELPV-ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       254 ~i~~d~~~~~~~~-~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++.+|+.+ .++. ++||+|++....+++         +.++.++|||||++++....
T Consensus       149 ~~~~d~~~-~~~~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          149 IVEGDGRK-GYPPNAPYNAIHVGAAAPDT---------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             EEESCGGG-CCGGGCSEEEEEECSCBSSC---------CHHHHHTEEEEEEEEEEESC
T ss_pred             EEECCccc-CCCcCCCccEEEECCchHHH---------HHHHHHHhcCCCEEEEEEec
Confidence            99999987 3333 789999988765543         25678899999999987654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.35  E-value=4.2e-12  Score=109.35  Aligned_cols=101  Identities=24%  Similarity=0.154  Sum_probs=82.6

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ...++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.+++++..+++  +++++.+|+.+++   ++||+|++++
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~  120 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMNP  120 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEECC
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---CCCCEEEEcC
Confidence            3456789999999999999999998777999999999 99999999988876  7999999998853   4899999999


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +++.... .....+++.+.+.|  ||.++.
T Consensus       121 p~~~~~~-~~~~~~l~~~~~~l--~~~~~~  147 (207)
T 1wy7_A          121 PFGSQRK-HADRPFLLKAFEIS--DVVYSI  147 (207)
T ss_dssp             CCSSSST-TTTHHHHHHHHHHC--SEEEEE
T ss_pred             CCccccC-CchHHHHHHHHHhc--CcEEEE
Confidence            8765433 33456778888887  554443

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.34  E-value=5.9e-13  Score=121.15  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=85.0

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc--CC--------CCcEEEEEcCccccccCCCc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN--KY--------DSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~--g~--------~~~i~~i~~d~~~~~~~~~~  268 (319)
                      .++.+|||+|||+|.++..+++.+..+|+++|+++ +++.|++++ ..  ++        .++++++.+|+.+.....++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            45679999999999999999988767999999999 999999887 33  22        46899999998654211478


Q ss_pred             eeEEEeccchhhhcchhh--HHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         269 VDIIISEWMGYFLLFETM--IDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ||+|+++.+.++-. ...  ...+++.+.++|+|||+++++..+.
T Consensus       153 fD~Ii~d~~~~~~~-~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~  196 (281)
T 1mjf_A          153 FDVIIADSTDPVGP-AKVLFSEEFYRYVYDALNNPGIYVTQAGSV  196 (281)
T ss_dssp             EEEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             eeEEEECCCCCCCc-chhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            99999987643211 111  2678999999999999999986543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.34  E-value=4e-12  Score=115.29  Aligned_cols=108  Identities=21%  Similarity=0.241  Sum_probs=82.7

Q ss_pred             CCcceeeccCCCch----HHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHHh-----------------------cC
Q psy8709         201 NNKHVIDVGAGTGI----LSIFAAQA-G----AAKVFAIEKSD-IAYETIDIIRK-----------------------NK  247 (319)
Q Consensus       201 ~~~~VLDiGcGtG~----ls~~la~~-g----~~~V~gvD~s~-~i~~a~~~~~~-----------------------~g  247 (319)
                      ++.+|+|+|||||.    +++.+++. +    ..+|+|+|+|+ +++.|++.+..                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34799999999998    66666664 3    23899999999 99999876410                       00


Q ss_pred             -------CCCcEEEEEcCccccccC-CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         248 -------YDSQIEVYHKLLEDVELP-VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       248 -------~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                             +..++.|.++|+.+.+++ .++||+|+|..+.+++. .+...+++..+++.|+|||+|++.+.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEEEec
Confidence                   013699999999886554 47899999977666653 35568999999999999999998554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.34  E-value=7.5e-13  Score=122.78  Aligned_cols=112  Identities=19%  Similarity=0.202  Sum_probs=86.4

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHh--cCC-CCcEEEEEcCcccc-ccCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRK--NKY-DSQIEVYHKLLEDV-ELPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~--~g~-~~~i~~i~~d~~~~-~~~~~~fD~Ii  273 (319)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..  +++ .++++++.+|+.+. +...++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            34579999999999999999986 567999999999 99999988765  233 36899999998764 22347899999


Q ss_pred             eccchhhhcchhhH-HHHHHHHhcccCCCcEEEeecCcc
Q psy8709         274 SEWMGYFLLFETMI-DSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       274 s~~~~~~l~~~~~~-~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ++....+-...... ..+++.+.+.|+|||++++...+.
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  233 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL  233 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            97643221111111 688999999999999999976554

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.34  E-value=3e-12  Score=123.28  Aligned_cols=121  Identities=14%  Similarity=0.079  Sum_probs=95.9

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCC
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPV  266 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~  266 (319)
                      ..+...+...++.+|||+|||+|..+..+++.. ..+|+|+|+++ +++.++++++..|.  +++++.+|+.+.+  ++.
T Consensus       236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~  313 (429)
T 1sqg_A          236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGE  313 (429)
T ss_dssp             HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTT
T ss_pred             HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhccc
Confidence            334444566788899999999999999999853 36999999999 99999999998887  4789999998775  455


Q ss_pred             CceeEEEeccchhhh---cc---------hhh-------HHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         267 ESVDIIISEWMGYFL---LF---------ETM-------IDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l---~~---------~~~-------~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ++||+|++++++...   ..         ..+       ...++..+.++|||||++++++|++..
T Consensus       314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~  379 (429)
T 1sqg_A          314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  379 (429)
T ss_dssp             CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence            789999987653221   11         111       257899999999999999999999863

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.33  E-value=1e-12  Score=121.49  Aligned_cols=113  Identities=15%  Similarity=0.161  Sum_probs=84.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc--CC-CCcEEEEEcCcccc-ccCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN--KY-DSQIEVYHKLLEDV-ELPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~--g~-~~~i~~i~~d~~~~-~~~~~~fD~Ii  273 (319)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++...  ++ .++++++.+|+.+. +.+.++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            34579999999999999999986 457999999999 999999987643  33 46899999998764 33457899999


Q ss_pred             eccchhhhcchhhH-HHHHHHHhcccCCCcEEEeecCcce
Q psy8709         274 SEWMGYFLLFETMI-DSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       274 s~~~~~~l~~~~~~-~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ++...+.-...... ..+++.+.++|+|||+++++..+.+
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~  226 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW  226 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcc
Confidence            98754321111112 6889999999999999999875543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.33  E-value=8.3e-13  Score=117.10  Aligned_cols=98  Identities=9%  Similarity=0.037  Sum_probs=78.0

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc---ccCC-Cce
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-----GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV---ELPV-ESV  269 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-----g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~---~~~~-~~f  269 (319)
                      .++.+|||+|||+|..+..+++.     +..+|+|+|+++ +++.|+      +...+++++++|+.+.   +... .+|
T Consensus        80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~f  153 (236)
T 2bm8_A           80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAH  153 (236)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCC
Confidence            35679999999999999999885     346999999999 877765      1236899999999874   4333 379


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhc-ccCCCcEEEeecC
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNR-FLKPDGVVCPNRF  309 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r-~LkpgG~li~~~~  309 (319)
                      |+|+++.. |     .....++.++.+ +|||||+++++..
T Consensus       154 D~I~~d~~-~-----~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          154 PLIFIDNA-H-----ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SEEEEESS-C-----SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CEEEECCc-h-----HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            99998654 2     245778999997 9999999998754

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.33  E-value=1.4e-12  Score=120.03  Aligned_cols=113  Identities=18%  Similarity=0.158  Sum_probs=85.3

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHh--cCC-CCcEEEEEcCcccc-ccCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRK--NKY-DSQIEVYHKLLEDV-ELPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~--~g~-~~~i~~i~~d~~~~-~~~~~~fD~Ii  273 (319)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..  +++ .++++++.+|+.+. +...++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            45679999999999999999986 457999999999 99999988765  333 46899999998763 33457899999


Q ss_pred             eccchhhhcch-hhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         274 SEWMGYFLLFE-TMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       274 s~~~~~~l~~~-~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ++...+..... .....+++.+.++|+|||+++++..+.+
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~  213 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW  213 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcc
Confidence            98764321111 1135689999999999999998875543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.32  E-value=2e-12  Score=117.31  Aligned_cols=111  Identities=15%  Similarity=0.114  Sum_probs=86.6

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHh--cCC-CCcEEEEEcCcccc-ccCCCceeEEEe
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRK--NKY-DSQIEVYHKLLEDV-ELPVESVDIIIS  274 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~--~g~-~~~i~~i~~d~~~~-~~~~~~fD~Iis  274 (319)
                      ++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..  +++ .++++++.+|+.+. +...++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            4579999999999999999987 667999999999 99999988754  233 36899999998764 333478999999


Q ss_pred             ccchhhhcchh-hHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         275 EWMGYFLLFET-MIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       275 ~~~~~~l~~~~-~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +.+.++..... ....+++.+.+.|+|||+++++..+.
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~  192 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP  192 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            87643211100 12578899999999999999987654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.31  E-value=2e-12  Score=107.32  Aligned_cols=100  Identities=15%  Similarity=0.244  Sum_probs=78.8

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------cCCCc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--------LPVES  268 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------~~~~~  268 (319)
                      ..++.+|||+|||+|.++..+++. + ..+++|+|+++++.          . .+++++.+|+.+.+        ++.++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----------~-~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----------I-VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----------C-TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----------c-CcEEEEEcccccchhhhhhhccCCCCc
Confidence            556789999999999999999886 4 36999999998211          1 57999999998876        66679


Q ss_pred             eeEEEeccchhhhcch--h------hHHHHHHHHhcccCCCcEEEeecC
Q psy8709         269 VDIIISEWMGYFLLFE--T------MIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~--~------~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ||+|+++.+.++....  .      ....++.++.++|+|||.+++...
T Consensus        89 ~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999998776554321  1      126889999999999999997543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.31  E-value=2.4e-12  Score=118.98  Aligned_cols=112  Identities=14%  Similarity=0.108  Sum_probs=87.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHh--cC-C-CCcEEEEEcCcccc-ccCCCceeEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRK--NK-Y-DSQIEVYHKLLEDV-ELPVESVDII  272 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~--~g-~-~~~i~~i~~d~~~~-~~~~~~fD~I  272 (319)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++..  .+ + .++++++.+|+.+. +...++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            34579999999999999999986 467999999999 99999988754  22 2 36899999999774 3345789999


Q ss_pred             Eeccchhh-hcc-hhh--HHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         273 ISEWMGYF-LLF-ETM--IDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       273 is~~~~~~-l~~-~~~--~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +++...++ ... ...  ...+++.+.++|+|||+++++..+.
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  198 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI  198 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCc
Confidence            99876443 001 111  3688999999999999999876543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.31  E-value=2.9e-12  Score=114.91  Aligned_cols=95  Identities=20%  Similarity=0.231  Sum_probs=78.3

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|+++.      .++.++.+|+.+++++.++||+|++...
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~  157 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA  157 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence            45679999999999999999986 345999999999 988887653      4678999999988887789999998543


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .          .++.++.++|||||.+++....
T Consensus       158 ~----------~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          158 P----------CKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             C----------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred             h----------hhHHHHHHhcCCCcEEEEEEcC
Confidence            1          2468889999999999976543

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.30  E-value=3.2e-12  Score=119.53  Aligned_cols=112  Identities=12%  Similarity=0.111  Sum_probs=86.0

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCcee
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVD  270 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD  270 (319)
                      .++..++..++.+|||||||+|.++..+++. +..+++++|+++++.  +++....+..++++++.+|+. .+.|  +||
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D  249 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HAD  249 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CCS
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCCCCeEEEecCCC-CCCC--CCc
Confidence            4555566677889999999999999999884 455899999977443  323333455578999999997 3445  899


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +|++..+.|++. ......+|+++++.|||||++++...
T Consensus       250 ~v~~~~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          250 VHVLKRILHNWG-DEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             EEEEESCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             EEEEehhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            999988877653 24457899999999999999987654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.30  E-value=6.9e-12  Score=107.59  Aligned_cols=96  Identities=17%  Similarity=0.062  Sum_probs=73.8

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ...++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.+++++.      +++++.+|+.+++   ++||+|++++
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~---~~~D~v~~~~  118 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNP  118 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECC
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---CCeeEEEECC
Confidence            3446789999999999999999998777899999999 9998887653      6899999998853   6899999999


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      ++++... .....+++++.+.+  |+.++
T Consensus       119 p~~~~~~-~~~~~~l~~~~~~~--g~~~~  144 (200)
T 1ne2_A          119 PFGSVVK-HSDRAFIDKAFETS--MWIYS  144 (200)
T ss_dssp             CC--------CHHHHHHHHHHE--EEEEE
T ss_pred             CchhccC-chhHHHHHHHHHhc--CcEEE
Confidence            9877643 22346788888888  44333

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.30  E-value=3.1e-12  Score=116.50  Aligned_cols=112  Identities=16%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcC--C-CCcEEEEEcCccccc-cCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNK--Y-DSQIEVYHKLLEDVE-LPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g--~-~~~i~~i~~d~~~~~-~~~~~fD~Ii  273 (319)
                      .++.+|||+|||+|.++..+++. +..+|+++|+++ +++.|++++...+  + .++++++.+|+.+.. ...++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            45679999999999999999986 457999999999 9999998875432  1 368999999997642 2247899999


Q ss_pred             eccchhhhcchhhH--HHHHHHHhcccCCCcEEEeecCcce
Q psy8709         274 SEWMGYFLLFETMI--DSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       274 s~~~~~~l~~~~~~--~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ++...++. ....+  ..+++.+.+.|+|||+++++..+.+
T Consensus       157 ~d~~~~~~-~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~  196 (283)
T 2i7c_A          157 VDSSDPIG-PAETLFNQNFYEKIYNALKPNGYCVAQCESLW  196 (283)
T ss_dssp             EECCCTTT-GGGGGSSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EcCCCCCC-cchhhhHHHHHHHHHHhcCCCcEEEEECCCcc
Confidence            97654322 11222  6899999999999999999876544

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.29  E-value=2.1e-12  Score=118.53  Aligned_cols=112  Identities=19%  Similarity=0.229  Sum_probs=85.8

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+...+...++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.+++++..++. ++++++.+|+.+.++ 
T Consensus        28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~-  104 (299)
T 2h1r_A           28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF-  104 (299)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC-
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc-
Confidence            4566667777777788899999999999999999985 4999999999 99999999887776 689999999988765 


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHH---------------HHHhcccCCCcEE
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVI---------------DARNRFLKPDGVV  304 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l---------------~~~~r~LkpgG~l  304 (319)
                       ++||+|+++.++++.  ...+..++               +.+.|+++++|..
T Consensus       105 -~~~D~Vv~n~py~~~--~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~~  155 (299)
T 2h1r_A          105 -PKFDVCTANIPYKIS--SPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGDS  155 (299)
T ss_dssp             -CCCSEEEEECCGGGH--HHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTST
T ss_pred             -ccCCEEEEcCCcccc--cHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCCc
Confidence             489999999887754  22334444               3466888888853

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.29  E-value=3.9e-12  Score=117.33  Aligned_cols=106  Identities=14%  Similarity=0.159  Sum_probs=83.6

Q ss_pred             cceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEEEeccch
Q psy8709         203 KHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDIIISEWMG  278 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~~~~  278 (319)
                      .+|||||||+|.++..+++ .+..+|++||+++ +++.|++++.... ..+++++.+|+.++.  .+.++||+|+++...
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            3899999999999999998 5555999999999 9999998875432 368999999997752  345789999997643


Q ss_pred             hhhcchh-hHHHHHHHHhcccCCCcEEEeecC
Q psy8709         279 YFLLFET-MIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       279 ~~l~~~~-~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +...... ....+++.++++|+|||+|+++..
T Consensus       170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            3211111 126789999999999999998765

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.28  E-value=6.7e-12  Score=113.31  Aligned_cols=123  Identities=12%  Similarity=0.086  Sum_probs=89.6

Q ss_pred             HHHHHHhccccc-CCCcceeeccCCC--chHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         188 SYKSAILNNKSL-FNNKHVIDVGAGT--GILSIFAAQ--AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       188 ~~~~~i~~~l~~-~~~~~VLDiGcGt--G~ls~~la~--~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      .+.......+.. ....+|||+|||+  +..+..+++  .+..+|+++|.|+ |+..|++++...+. .+++++++|+.+
T Consensus        64 ~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~~~  142 (277)
T 3giw_A           64 DWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADMLD  142 (277)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCTTC
T ss_pred             HHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEecccC
Confidence            344444444432 2336899999997  334444443  3556999999999 99999988865432 579999999987


Q ss_pred             ccc----C--CCcee-----EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         262 VEL----P--VESVD-----IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       262 ~~~----~--~~~fD-----~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ...    +  .+.||     .|+++.++||+.....+..+++++.+.|+|||+|++++.+.
T Consensus       143 ~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          143 PASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             HHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             hhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            521    1  23455     58889999998776667899999999999999999987654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.28  E-value=6.2e-12  Score=107.65  Aligned_cols=99  Identities=16%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-C--CCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc------------
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-G--AAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE------------  263 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g--~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~------------  263 (319)
                      ..++.+|||+|||+|.++..+++. +  ..+|+|+|+|++.          .. .+++++++|+.+.+            
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CC-CCceEEEccccchhhhhhcccccccc
Confidence            456789999999999999999985 4  4699999999921          12 57899999998765            


Q ss_pred             -------------cCCCceeEEEeccchhhhcc--hh------hHHHHHHHHhcccCCCcEEEeec
Q psy8709         264 -------------LPVESVDIIISEWMGYFLLF--ET------MIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       264 -------------~~~~~fD~Iis~~~~~~l~~--~~------~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                                   ++.++||+|+++.+.++...  .+      ....++.++.++|||||.+++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A           89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                         45578999999876544211  01      12357899999999999999754

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.28  E-value=1.4e-11  Score=118.79  Aligned_cols=116  Identities=18%  Similarity=0.163  Sum_probs=93.0

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-  262 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-  262 (319)
                      .++.+.+.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+ +++.|+++++.+++ .+++|+.+|+.+. 
T Consensus       270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~f~~~d~~~~l  347 (433)
T 1uwv_A          270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDV  347 (433)
T ss_dssp             HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEECCHHHHh
Confidence            35677778877777777889999999999999999998 45999999999 99999999999988 4899999999873 


Q ss_pred             ---ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         263 ---ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       263 ---~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                         +++.++||+|+++++....   .   .+++.+. .++|+++++++..
T Consensus       348 ~~~~~~~~~fD~Vv~dPPr~g~---~---~~~~~l~-~~~p~~ivyvsc~  390 (433)
T 1uwv_A          348 TKQPWAKNGFDKVLLDPARAGA---A---GVMQQII-KLEPIRIVYVSCN  390 (433)
T ss_dssp             SSSGGGTTCCSEEEECCCTTCC---H---HHHHHHH-HHCCSEEEEEESC
T ss_pred             hhhhhhcCCCCEEEECCCCccH---H---HHHHHHH-hcCCCeEEEEECC
Confidence               3445689999999886432   1   2344433 3789998887654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.28  E-value=7.4e-13  Score=119.57  Aligned_cols=113  Identities=13%  Similarity=0.126  Sum_probs=76.9

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHH-HHhcCCCCcEEEE--EcCccccccCCCc
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI-IRKNKYDSQIEVY--HKLLEDVELPVES  268 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~-~~~~g~~~~i~~i--~~d~~~~~~~~~~  268 (319)
                      .+.+.....++.+|||+|||+|.++..+++.  .+|+|+|+++|+..+.+. ........++.++  ++|+.+++  .++
T Consensus        65 ~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~  140 (265)
T 2oxt_A           65 WMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VER  140 (265)
T ss_dssp             HHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCC
T ss_pred             HHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCC
Confidence            3333344567789999999999999999988  589999999942222111 0000111268899  89998765  578


Q ss_pred             eeEEEeccchhhhcch-hh-H--HHHHHHHhcccCCCc--EEEeecC
Q psy8709         269 VDIIISEWMGYFLLFE-TM-I--DSVIDARNRFLKPDG--VVCPNRF  309 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~-~~-~--~~~l~~~~r~LkpgG--~li~~~~  309 (319)
                      ||+|+|+.. +..... .+ .  ..+|..+.++|||||  .|++...
T Consensus       141 fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~  186 (265)
T 2oxt_A          141 TDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL  186 (265)
T ss_dssp             CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             CcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence            999999876 332211 11 1  137899999999999  8887543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.28  E-value=2.1e-12  Score=117.83  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=75.3

Q ss_pred             Hhccccc-CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEE-EcCccccc---cCC
Q psy8709         193 ILNNKSL-FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVY-HKLLEDVE---LPV  266 (319)
Q Consensus       193 i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i-~~d~~~~~---~~~  266 (319)
                      ++..+.. .++.+|||+|||||.++..+++.|+.+|+|+|+|+ |++.+.+.   .   .++... ..++..+.   ++.
T Consensus        76 ~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~---~rv~~~~~~ni~~l~~~~l~~  149 (291)
T 3hp7_A           76 ALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D---DRVRSMEQYNFRYAEPVDFTE  149 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C---TTEEEECSCCGGGCCGGGCTT
T ss_pred             HHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C---cccceecccCceecchhhCCC
Confidence            3344433 45679999999999999999999888999999999 98875432   1   234332 33444433   344


Q ss_pred             CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         267 ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .+||+|+++..++.      +..+|.++.++|+|||.+++-
T Consensus       150 ~~fD~v~~d~sf~s------l~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          150 GLPSFASIDVSFIS------LNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             CCCSEEEECCSSSC------GGGTHHHHHHHSCTTCEEEEE
T ss_pred             CCCCEEEEEeeHhh------HHHHHHHHHHHcCcCCEEEEE
Confidence            46999999876543      367899999999999999875

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.28  E-value=1.1e-11  Score=117.73  Aligned_cols=126  Identities=12%  Similarity=0.022  Sum_probs=100.4

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCC---------------------------------------
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA---------------------------------------  224 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~---------------------------------------  224 (319)
                      +..+.+...++......++..|||++||+|.+++.++..+.                                       
T Consensus       178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  257 (385)
T 3ldu_A          178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK  257 (385)
T ss_dssp             CCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence            34577888888888888889999999999999998887531                                       


Q ss_pred             CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh-hcchhhHHHHHHHHhcccCC--
Q psy8709         225 AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF-LLFETMIDSVIDARNRFLKP--  300 (319)
Q Consensus       225 ~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~-l~~~~~~~~~l~~~~r~Lkp--  300 (319)
                      .+|+|+|+++ +++.|++++..+|+.+++++.++|+.+++.+ ++||+|++|+++.. +.....+..+.+.+.+.|++  
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~  336 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK  336 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence            3799999999 9999999999999977899999999988765 68999999998542 22234566677777667765  


Q ss_pred             CcEEEeecCc
Q psy8709         301 DGVVCPNRFT  310 (319)
Q Consensus       301 gG~li~~~~t  310 (319)
                      ||.+++-+..
T Consensus       337 g~~~~iit~~  346 (385)
T 3ldu_A          337 NWSYYLITSY  346 (385)
T ss_dssp             SCEEEEEESC
T ss_pred             CCEEEEEECC
Confidence            7777654443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.26  E-value=1.6e-11  Score=116.84  Aligned_cols=125  Identities=12%  Similarity=0.022  Sum_probs=98.5

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCC---------------------------------------
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA---------------------------------------  224 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~---------------------------------------  224 (319)
                      +-.+.+...++......++..|||++||+|.+++.++..+.                                       
T Consensus       184 pl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  263 (393)
T 3k0b_A          184 PIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP  263 (393)
T ss_dssp             SCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence            33577888888888888889999999999999998887422                                       


Q ss_pred             CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh-cchhhHHHHHHHHhcccCC--
Q psy8709         225 AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL-LFETMIDSVIDARNRFLKP--  300 (319)
Q Consensus       225 ~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l-~~~~~~~~~l~~~~r~Lkp--  300 (319)
                      .+|+|+|+++ +++.|++++..+|+.++++++++|+.+++.+ .+||+|++|+++..- .....+..+...+.+.||+  
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~  342 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMP  342 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCC
Confidence            3599999999 9999999999999977899999999988765 589999999986422 1224455566666666655  


Q ss_pred             CcEEEeecC
Q psy8709         301 DGVVCPNRF  309 (319)
Q Consensus       301 gG~li~~~~  309 (319)
                      ||.+++-+.
T Consensus       343 g~~~~iit~  351 (393)
T 3k0b_A          343 TWSVYVLTS  351 (393)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEEC
Confidence            877765444

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.26  E-value=8.6e-12  Score=107.02  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=73.9

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc--------C---CC
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVEL--------P---VE  267 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~--------~---~~  267 (319)
                      ..++.+|||+|||+|.++..+++. ..+|+|+|++++          ... .+++++++|+.+...        +   .+
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~----------~~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEM----------EEI-AGVRFIRCDIFKETIFDDIDRALREEGIE   90 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCC----------CCC-TTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccc----------ccC-CCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence            456789999999999999999998 559999999982          112 579999999987542        1   14


Q ss_pred             ceeEEEeccchhhhc--------chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         268 SVDIIISEWMGYFLL--------FETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~--------~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +||+|+|+++.....        .......++..+.++|||||.|++..
T Consensus        91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A           91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            899999976422111        11234678899999999999998644

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.25  E-value=9.5e-12  Score=117.61  Aligned_cols=108  Identities=14%  Similarity=0.181  Sum_probs=81.6

Q ss_pred             HHHHHHhcccccCCCcceeeccCC------CchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC
Q psy8709         188 SYKSAILNNKSLFNNKHVIDVGAG------TGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL  258 (319)
Q Consensus       188 ~~~~~i~~~l~~~~~~~VLDiGcG------tG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d  258 (319)
                      .+.+.++..+. .++.+|||||||      +|..+..+++.  +..+|+|+|+|+ |.        .  ...+++++++|
T Consensus       204 ~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~--~~~rI~fv~GD  272 (419)
T 3sso_A          204 PHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V--DELRIRTIQGD  272 (419)
T ss_dssp             HHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G--CBTTEEEEECC
T ss_pred             HHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h--cCCCcEEEEec
Confidence            34444444443 245799999999      77777766653  556999999999 72        1  22689999999


Q ss_pred             ccccccC------CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         259 LEDVELP------VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       259 ~~~~~~~------~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.++++.      .++||+|+++... +   ..+...+|++++++|||||+++++...
T Consensus       273 a~dlpf~~~l~~~d~sFDlVisdgsH-~---~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          273 QNDAEFLDRIARRYGPFDIVIDDGSH-I---NAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             TTCHHHHHHHHHHHCCEEEEEECSCC-C---HHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             ccccchhhhhhcccCCccEEEECCcc-c---chhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            9987665      5899999997653 2   256788999999999999999987654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.25  E-value=3.6e-11  Score=114.00  Aligned_cols=126  Identities=16%  Similarity=0.116  Sum_probs=101.3

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCC---------------------------------------
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA---------------------------------------  224 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~---------------------------------------  224 (319)
                      +-.+.+...++......++..+||.+||+|.+++.++..+.                                       
T Consensus       177 pl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  256 (384)
T 3ldg_A          177 PIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ  256 (384)
T ss_dssp             CCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence            34577888888888888889999999999999998887422                                       


Q ss_pred             CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhhh-cchhhHHHHHHHHhcccCC--
Q psy8709         225 AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFL-LFETMIDSVIDARNRFLKP--  300 (319)
Q Consensus       225 ~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l-~~~~~~~~~l~~~~r~Lkp--  300 (319)
                      .+|+|+|+++ +++.|++|+..+|+.+.++++++|+.+++.+ .+||+|++|+++..- ..+..+..+...+.+.||+  
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~  335 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLK  335 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCT
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCC
Confidence            3599999999 9999999999999988899999999998765 589999999986532 2335566777777767765  


Q ss_pred             CcEEEeecCc
Q psy8709         301 DGVVCPNRFT  310 (319)
Q Consensus       301 gG~li~~~~t  310 (319)
                      ||.+++-+..
T Consensus       336 g~~~~iit~~  345 (384)
T 3ldg_A          336 TWSQFILTND  345 (384)
T ss_dssp             TSEEEEEESC
T ss_pred             CcEEEEEECC
Confidence            8877755443

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.24  E-value=1.2e-11  Score=105.41  Aligned_cols=100  Identities=22%  Similarity=0.251  Sum_probs=74.3

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-CC---------CEEEEEecHHHHHHHHHHHHhcCCCCcEEEE-EcCccccc----
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-GA---------AKVFAIEKSDIAYETIDIIRKNKYDSQIEVY-HKLLEDVE----  263 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g~---------~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i-~~d~~~~~----  263 (319)
                      ..++.+|||+|||+|.++..+++. +.         .+|+|+|++++          ... .+++++ .+|+.+..    
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----------~~~-~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----------FPL-EGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----------CCC-TTCEEECSCCTTSHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----------ccC-CCCeEEEeccCCCHHHHHH
Confidence            456789999999999999999986 54         69999999992          112 468888 88887643    


Q ss_pred             ----cCCCceeEEEeccchhhhcch-hh-------HHHHHHHHhcccCCCcEEEeecC
Q psy8709         264 ----LPVESVDIIISEWMGYFLLFE-TM-------IDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       264 ----~~~~~fD~Iis~~~~~~l~~~-~~-------~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                          ++.++||+|+++...++..+. .+       ...++.++.++|||||.+++...
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence                234589999996643321111 11       25789999999999999998754

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.24  E-value=7.4e-11  Score=108.73  Aligned_cols=115  Identities=15%  Similarity=0.022  Sum_probs=89.8

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC---Ccee
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV---ESVD  270 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~---~~fD  270 (319)
                      +...++.+|||+|||+|..+..+++.  +..+|+++|+++ +++.++++++..|+ .+++++++|+.++....   .+||
T Consensus        98 l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~fD  176 (309)
T 2b9e_A           98 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVH  176 (309)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             hCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCccccccCCCC
Confidence            34567789999999999999999884  456999999999 99999999999988 67999999998765321   5799


Q ss_pred             EEEeccchhhh----cc----------hhh-------HHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         271 IIISEWMGYFL----LF----------ETM-------IDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       271 ~Iis~~~~~~l----~~----------~~~-------~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      .|+++++....    .+          ...       ...+|..+.++|+ ||+++.++|++..
T Consensus       177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~  239 (309)
T 2b9e_A          177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ  239 (309)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG
T ss_pred             EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh
Confidence            99987653211    00          011       2357888888887 9999999999863

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.23  E-value=4e-11  Score=115.23  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=86.6

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      +.+.+.+..   ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+ +++.|++++..+++ . ++++.+|+.++.. 
T Consensus       279 e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl-~-v~~~~~d~~~~~~-  351 (425)
T 2jjq_A          279 VNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNV-D-AEFEVASDREVSV-  351 (425)
T ss_dssp             HHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTC-C-EEEEECCTTTCCC-
T ss_pred             HHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCC-c-EEEEECChHHcCc-
Confidence            455555555   4567899999999999999999974 4999999999 99999999999988 3 9999999988643 


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                       .+||+|+++++...+     ...++..+. .|+|||+++++...
T Consensus       352 -~~fD~Vv~dPPr~g~-----~~~~~~~l~-~l~p~givyvsc~p  389 (425)
T 2jjq_A          352 -KGFDTVIVDPPRAGL-----HPRLVKRLN-REKPGVIVYVSCNP  389 (425)
T ss_dssp             -TTCSEEEECCCTTCS-----CHHHHHHHH-HHCCSEEEEEESCH
T ss_pred             -cCCCEEEEcCCccch-----HHHHHHHHH-hcCCCcEEEEECCh
Confidence             389999999874321     123444443 48999999988653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.23  E-value=8.7e-12  Score=124.18  Aligned_cols=102  Identities=19%  Similarity=0.156  Sum_probs=81.1

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEeccc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIISEWM  277 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis~~~  277 (319)
                      ++.+|||||||+|.++..+++.|+ .|+|||+++ +++.|+..+...+. -++.+.+++++++  ..+.++||+|+|..+
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~  143 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLAIGLSV  143 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEEEECcc
Confidence            346999999999999999999987 999999999 99999999888774 3799999999987  345678999999888


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      .+++.+...... +..+.+.|+++|..+
T Consensus       144 ~ehv~~~~~~~~-~~~~~~tl~~~~~~~  170 (569)
T 4azs_A          144 FHHIVHLHGIDE-VKRLLSRLADVTQAV  170 (569)
T ss_dssp             HHHHHHHHCHHH-HHHHHHHHHHHSSEE
T ss_pred             hhcCCCHHHHHH-HHHHHHHhcccccee
Confidence            888754333222 234555667766654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.22  E-value=2.5e-11  Score=113.39  Aligned_cols=110  Identities=15%  Similarity=0.089  Sum_probs=86.2

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCC------CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGA------AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI  271 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~------~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~  271 (319)
                      ..++.+|||+|||+|.++..+++...      .+++|+|+++ +++.|+.++..++.  ++.++.+|..... +.++||+
T Consensus       128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-~~~~fD~  204 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LVDPVDV  204 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CCCCEEE
T ss_pred             CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-ccCCccE
Confidence            34567999999999999998887521      5899999999 99999999888776  6889999987643 3478999


Q ss_pred             EEeccchhhhcchh---------------hHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         272 IISEWMGYFLLFET---------------MIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       272 Iis~~~~~~l~~~~---------------~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      |++|+++.+.....               ....++..+.+.|+|||++++..+.-
T Consensus       205 Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          205 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             EEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            99999865432211               11258999999999999998776543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.20  E-value=9.5e-12  Score=107.74  Aligned_cols=88  Identities=24%  Similarity=0.221  Sum_probs=73.7

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY  279 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~  279 (319)
                      .++.+|||+|||+|.++..++    .+|+|+|+++.               +++++.+|+.+++++.++||+|++..+.|
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  126 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM  126 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence            456899999999999987772    58999999982               56788999998888778999999977664


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +    .+...++.++.++|+|||.+++....
T Consensus       127 ~----~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          127 G----TNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             S----SCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             c----cCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence            2    56789999999999999999986543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.20  E-value=4.3e-11  Score=112.82  Aligned_cols=110  Identities=16%  Similarity=0.181  Sum_probs=84.9

Q ss_pred             HHHHhcccc-cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         190 KSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       190 ~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      ...++..++ ..+..+|||||||+|.++..+++. +..+++++|+..+++.+++       .++++++.+|+.+ ++|..
T Consensus       191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p~~  262 (368)
T 3reo_A          191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA-------FSGVEHLGGDMFD-GVPKG  262 (368)
T ss_dssp             HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-------CTTEEEEECCTTT-CCCCC
T ss_pred             HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh-------cCCCEEEecCCCC-CCCCC
Confidence            344555554 566789999999999999999884 5569999999337665542       1589999999987 66643


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                        |+|++..+.|++.. .....+|+++++.|+|||++++....
T Consensus       263 --D~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          263 --DAIFIKWICHDWSD-EHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             --SEEEEESCGGGBCH-HHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             --CEEEEechhhcCCH-HHHHHHHHHHHHHcCCCCEEEEEEec
Confidence              99999888776533 55678999999999999999876543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.20  E-value=2.8e-12  Score=113.56  Aligned_cols=97  Identities=19%  Similarity=0.188  Sum_probs=64.6

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEE-cCcccc---ccCCCceeEEE
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYH-KLLEDV---ELPVESVDIII  273 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~-~d~~~~---~~~~~~fD~Ii  273 (319)
                      ..++.+|||+|||+|.++..+++.|..+|+|+|+|+ |++.++++..      ++.... .++...   .++...||.+.
T Consensus        35 ~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~~  108 (232)
T 3opn_A           35 EINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLADFEQGRPSFTS  108 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGGCCSCCCSEEE
T ss_pred             CCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhHcCcCCCCEEE
Confidence            345679999999999999999999877999999999 9888765322      222211 112111   11111244444


Q ss_pred             eccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ++.++..+      ..++.++.++|||||.+++.
T Consensus       109 ~D~v~~~l------~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          109 IDVSFISL------DLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             ECCSSSCG------GGTHHHHHHHSCTTCEEEEE
T ss_pred             EEEEhhhH------HHHHHHHHHhccCCCEEEEE
Confidence            44332221      56889999999999999984

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.18  E-value=8.6e-13  Score=117.49  Aligned_cols=117  Identities=17%  Similarity=0.232  Sum_probs=89.0

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.+++++.   ..++++++.+|+.+++++
T Consensus        15 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~   90 (245)
T 1yub_A           15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcc
Confidence            4455666677777788899999999999999999986 6999999999 8888776654   136899999999988776


Q ss_pred             C-CceeEEEeccchhhhcchhhHHHH----------H----HHHhcccCCCcEEEeecCc
Q psy8709         266 V-ESVDIIISEWMGYFLLFETMIDSV----------I----DARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       266 ~-~~fD~Iis~~~~~~l~~~~~~~~~----------l----~~~~r~LkpgG~li~~~~t  310 (319)
                      . ++| .|++|++++..  ......+          +    +.+.++|+|||.+++....
T Consensus        91 ~~~~f-~vv~n~Py~~~--~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~  147 (245)
T 1yub_A           91 NKQRY-KIVGNIPYHLS--TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHT  147 (245)
T ss_dssp             CSSEE-EEEEECCSSSC--HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTT
T ss_pred             cCCCc-EEEEeCCcccc--HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhee
Confidence            3 678 78888876532  1222222          2    5688999999998765543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.18  E-value=6.1e-11  Score=105.57  Aligned_cols=113  Identities=18%  Similarity=0.266  Sum_probs=86.6

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ...+.+.+...+...++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.+++++...   ++++++++|+.++++
T Consensus        15 d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~   90 (244)
T 1qam_A           15 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKF   90 (244)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCC
T ss_pred             CHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCc
Confidence            46677888888888888999999999999999999986 5999999999 999998877532   589999999999877


Q ss_pred             CC-CceeEEEeccchhhhcchhhHHHHH--------------HHHhcccCCCcEEE
Q psy8709         265 PV-ESVDIIISEWMGYFLLFETMIDSVI--------------DARNRFLKPDGVVC  305 (319)
Q Consensus       265 ~~-~~fD~Iis~~~~~~l~~~~~~~~~l--------------~~~~r~LkpgG~li  305 (319)
                      +. ..| .|++|.+++..  ...+..++              +.+.|+++|+|.+.
T Consensus        91 ~~~~~~-~vv~nlPy~~~--~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~  143 (244)
T 1qam_A           91 PKNQSY-KIFGNIPYNIS--TDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA  143 (244)
T ss_dssp             CSSCCC-EEEEECCGGGH--HHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred             ccCCCe-EEEEeCCcccC--HHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence            63 355 67888876532  12222332              33677888887654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.18  E-value=4.3e-12  Score=115.21  Aligned_cols=114  Identities=14%  Similarity=0.148  Sum_probs=78.1

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HhcCCCCcEEEE--EcCccccccCCC
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDII-RKNKYDSQIEVY--HKLLEDVELPVE  267 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~-~~~g~~~~i~~i--~~d~~~~~~~~~  267 (319)
                      .++.+.....++.+|||+|||+|.++..+++.  .+|+|+|+++|+..+.+.. .......++.++  ++|+.+++  .+
T Consensus        72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~  147 (276)
T 2wa2_A           72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PF  147 (276)
T ss_dssp             HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CC
T ss_pred             HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CC
Confidence            34444444567889999999999999999998  5899999999422221110 001111278999  89998765  57


Q ss_pred             ceeEEEeccchhhhcch-hh-H--HHHHHHHhcccCCCc--EEEeecC
Q psy8709         268 SVDIIISEWMGYFLLFE-TM-I--DSVIDARNRFLKPDG--VVCPNRF  309 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~-~~-~--~~~l~~~~r~LkpgG--~li~~~~  309 (319)
                      +||+|+|+.. ++.... .+ .  ..+|..+.++|||||  .|++...
T Consensus       148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~  194 (276)
T 2wa2_A          148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL  194 (276)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence            8999999876 332111 11 1  137899999999999  8887543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.18  E-value=3.7e-11  Score=113.35  Aligned_cols=113  Identities=12%  Similarity=0.046  Sum_probs=87.5

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--  263 (319)
                      +.+..++++.+... +.+|||+|||+|.++..+++. ..+|+|+|+++ +++.|+++++.+++ ++++++.+|+.+..  
T Consensus       200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~  276 (369)
T 3bt7_A          200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQA  276 (369)
T ss_dssp             HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHH
T ss_pred             HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHH
Confidence            66667777666544 468999999999999998885 56999999999 99999999999998 68999999997752  


Q ss_pred             cCC--------------CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         264 LPV--------------ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       264 ~~~--------------~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +..              .+||+|+.+++...+         ..++.+.|+++|.+++.+|+.
T Consensus       277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~---------~~~~~~~l~~~g~ivyvsc~p  329 (369)
T 3bt7_A          277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGL---------DSETEKMVQAYPRILYISCNP  329 (369)
T ss_dssp             HSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC---------CHHHHHHHTTSSEEEEEESCH
T ss_pred             HhhccccccccccccccCCCCEEEECcCcccc---------HHHHHHHHhCCCEEEEEECCH
Confidence            221              379999999875321         123344566888888777764

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.17  E-value=2.6e-11  Score=115.79  Aligned_cols=117  Identities=14%  Similarity=0.019  Sum_probs=89.3

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      +...+.+.+...+...++.+|||+|||+|.++..+++.  +..+++|+|+++ +++.|          .+++++++|+.+
T Consensus        23 TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~   92 (421)
T 2ih2_A           23 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLL   92 (421)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGG
T ss_pred             CCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhh
Confidence            34666777777766556679999999999999999884  456999999999 76555          478999999987


Q ss_pred             cccCCCceeEEEeccchhhhcc---------hh-----------------hHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         262 VELPVESVDIIISEWMGYFLLF---------ET-----------------MIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~---------~~-----------------~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ... .++||+|++|+++.....         ..                 ....++..+.++|+|||.+++..+.-+
T Consensus        93 ~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~  168 (421)
T 2ih2_A           93 WEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATW  168 (421)
T ss_dssp             CCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             cCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHH
Confidence            653 368999999988654322         11                 122678899999999999987766543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.17  E-value=6.4e-11  Score=111.53  Aligned_cols=109  Identities=16%  Similarity=0.148  Sum_probs=84.5

Q ss_pred             HHHhcccc-cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         191 SAILNNKS-LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       191 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      ..++..+. ..+..+|||||||+|.++..+++. +..+++++|+..+++.+++       .++++++.+|+.+ ++|.. 
T Consensus       190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~-  260 (364)
T 3p9c_A          190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ-------FPGVTHVGGDMFK-EVPSG-  260 (364)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-------CTTEEEEECCTTT-CCCCC-
T ss_pred             HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh-------cCCeEEEeCCcCC-CCCCC-
Confidence            34444444 556789999999999999999884 5569999999447665542       1589999999987 66643 


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                       |+|++..+.|++. .+....+|+++++.|+|||++++....
T Consensus       261 -D~v~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          261 -DTILMKWILHDWS-DQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             -SEEEEESCGGGSC-HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             -CEEEehHHhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence             9999988877653 356678999999999999999876543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.16  E-value=1.7e-10  Score=101.90  Aligned_cols=115  Identities=16%  Similarity=0.151  Sum_probs=89.0

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      +.+...++..   .+..+|||+|||+|.++..+.  +...|+|+|+++ +++.+++++..++.  +..+..+|....+++
T Consensus        94 d~fY~~i~~~---~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~  166 (253)
T 3frh_A           94 DTLYDFIFSA---ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPA  166 (253)
T ss_dssp             HHHHHHHTSS---CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCC
T ss_pred             HHHHHHHhcC---CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCC
Confidence            4556666665   456799999999999999887  667999999999 99999999988874  789999999887766


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                       ++||+|++.-+.|++.+... ...+ ++.+.|+++|+++ +..|-.
T Consensus       167 -~~~DvvLllk~lh~LE~q~~-~~~~-~ll~aL~~~~vvV-sfPtks  209 (253)
T 3frh_A          167 -EAGDLALIFKLLPLLEREQA-GSAM-ALLQSLNTPRMAV-SFPTRS  209 (253)
T ss_dssp             -CBCSEEEEESCHHHHHHHST-THHH-HHHHHCBCSEEEE-EEECC-
T ss_pred             -CCcchHHHHHHHHHhhhhch-hhHH-HHHHHhcCCCEEE-EcChHH
Confidence             69999999888888755433 2333 6666899987554 444333

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.16  E-value=8e-11  Score=107.72  Aligned_cols=91  Identities=18%  Similarity=0.250  Sum_probs=79.1

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ...+.+.+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++...   ++++++++|+.++++
T Consensus        35 d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~  110 (295)
T 3gru_A           35 DKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDL  110 (295)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCG
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCc
Confidence            35677788888888888999999999999999999984 5999999999 999999888732   589999999999888


Q ss_pred             CCCceeEEEeccchhh
Q psy8709         265 PVESVDIIISEWMGYF  280 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~  280 (319)
                      +..+||.|++|.+++.
T Consensus       111 ~~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A          111 NKLDFNKVVANLPYQI  126 (295)
T ss_dssp             GGSCCSEEEEECCGGG
T ss_pred             ccCCccEEEEeCcccc
Confidence            7678999999988764

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.15  E-value=8.8e-11  Score=104.67  Aligned_cols=112  Identities=10%  Similarity=0.011  Sum_probs=90.2

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      +.+...++..+.  +..+|||+|||+|.++..++.. +..+|+++|+++ +++.+++++..+|.  +..+...|...-+.
T Consensus       120 D~fY~~i~~~i~--~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p  195 (281)
T 3lcv_B          120 DEFYRELFRHLP--RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRL  195 (281)
T ss_dssp             HHHHHHHGGGSC--CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCC
T ss_pred             HHHHHHHHhccC--CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCC
Confidence            566677776663  3579999999999999998885 778999999999 99999999999987  47888899877654


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      + ++||+++++-+.+++..+.. ...+ ++...|+|+|+++
T Consensus       196 ~-~~~DvaL~lkti~~Le~q~k-g~g~-~ll~aL~~~~vvV  233 (281)
T 3lcv_B          196 D-EPADVTLLLKTLPCLETQQR-GSGW-EVIDIVNSPNIVV  233 (281)
T ss_dssp             C-SCCSEEEETTCHHHHHHHST-THHH-HHHHHSSCSEEEE
T ss_pred             C-CCcchHHHHHHHHHhhhhhh-HHHH-HHHHHhCCCCEEE
Confidence            4 88999999988888744322 2333 7888999998765

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.15  E-value=5.2e-11  Score=112.26  Aligned_cols=107  Identities=17%  Similarity=0.111  Sum_probs=82.9

Q ss_pred             HHHhcccc-cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         191 SAILNNKS-LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       191 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      ..++..++ ..++.+|||+|||+|.++..+++. +..+++++|+ + +++.+++      . .+++++.+|+.+ ++|. 
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~~-  267 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA-SVPQ-  267 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT-CCCC-
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc-CCCC-
Confidence            34444444 556789999999999999999985 3558999999 6 7766543      2 469999999987 5653 


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                       ||+|++..+.|++.. .....+++++++.|+|||++++...
T Consensus       268 -~D~v~~~~~lh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e~  307 (372)
T 1fp1_D          268 -GDAMILKAVCHNWSD-EKCIEFLSNCHKALSPNGKVIIVEF  307 (372)
T ss_dssp             -EEEEEEESSGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CCEEEEecccccCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence             999999888776532 3345899999999999999997643

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.15  E-value=2.3e-10  Score=107.27  Aligned_cols=115  Identities=14%  Similarity=0.131  Sum_probs=90.8

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV  269 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f  269 (319)
                      ..++...+.....+|+|||||+|.++..+++. +..+++..|..++++.|++++...+ .++++++.+|+.+.+.  ..+
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~--~~~  245 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL--PEA  245 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC---CCSEEEEESCTTTSCC--CCC
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc-cCceeeecCccccCCC--CCc
Confidence            44555566677789999999999999999884 5668999998668888888776554 4899999999976544  458


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      |++++..+.|.+. .+....+|+++++.|+|||.+++...
T Consensus       246 D~~~~~~vlh~~~-d~~~~~iL~~~~~al~pgg~lli~e~  284 (353)
T 4a6d_A          246 DLYILARVLHDWA-DGKCSHLLERIYHTCKPGGGILVIES  284 (353)
T ss_dssp             SEEEEESSGGGSC-HHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             eEEEeeeecccCC-HHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence            9999988877653 35567899999999999999886543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.15  E-value=4.1e-11  Score=115.80  Aligned_cols=125  Identities=11%  Similarity=-0.007  Sum_probs=96.3

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--------------CCCEEEEEecHH-HHHHHHHHHHhcCCC
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--------------GAAKVFAIEKSD-IAYETIDIIRKNKYD  249 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--------------g~~~V~gvD~s~-~i~~a~~~~~~~g~~  249 (319)
                      +...+.+.+.+.+...++.+|||+|||+|.+...+++.              ...+++|+|+++ ++..|+.++..+|..
T Consensus       155 TP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          155 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            34566777777777777889999999999999888763              234799999999 999999998888874


Q ss_pred             C-cEEEEEcCccccccCCCceeEEEeccchhhhcchh--------------hHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         250 S-QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFET--------------MIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       250 ~-~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~--------------~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      . ++.+.++|....+.. ++||+|++|+++.......              ....++..+.++|+|||++++-.++
T Consensus       235 ~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          235 TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            3 678899998776544 5899999999875432111              1236889999999999998765543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.15  E-value=2e-11  Score=112.34  Aligned_cols=106  Identities=11%  Similarity=0.093  Sum_probs=74.0

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEec----HH-HHHHHHHHHHhcCCCCcEEEEEc-CccccccCCCcee
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK----SD-IAYETIDIIRKNKYDSQIEVYHK-LLEDVELPVESVD  270 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~----s~-~i~~a~~~~~~~g~~~~i~~i~~-d~~~~~~~~~~fD  270 (319)
                      ....++.+|||+|||+|.++..+++.  .+|+|+|+    ++ +++.+.  .+..+ .++++++.+ |+.+++  .++||
T Consensus        78 ~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--~~~fD  150 (305)
T 2p41_A           78 NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--PERCD  150 (305)
T ss_dssp             TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--cCCCC
Confidence            33456789999999999999999998  48999999    44 332110  11111 157999999 887654  46899


Q ss_pred             EEEeccchh---hhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         271 IIISEWMGY---FLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       271 ~Iis~~~~~---~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +|+|+.+.+   +.........+|..+.++|||||.|++...
T Consensus       151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~  192 (305)
T 2p41_A          151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL  192 (305)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            999987643   221111112578889999999999997543

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.14  E-value=1.4e-11  Score=110.95  Aligned_cols=99  Identities=18%  Similarity=0.071  Sum_probs=79.3

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh--cCC-CCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK--NKY-DSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~--~g~-~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      .+++|||+|||+|.++..+++.+ .+|+++|+++ +++.|++++..  .++ .++++++.+|..+..   ++||+|+++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~  147 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ  147 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC
Confidence            45799999999999999998886 8999999999 99988876532  111 358999999998754   7899999874


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .        +...+++.+.+.|+|||++++...+.
T Consensus       148 ~--------dp~~~~~~~~~~L~pgG~lv~~~~~~  174 (262)
T 2cmg_A          148 E--------PDIHRIDGLKRMLKEDGVFISVAKHP  174 (262)
T ss_dssp             C--------CCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             C--------ChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            2        12248999999999999999875443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.11  E-value=8.6e-11  Score=111.53  Aligned_cols=103  Identities=15%  Similarity=-0.001  Sum_probs=84.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCc-EEEEEcCcccccc--CCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQ-IEVYHKLLEDVEL--PVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~-i~~i~~d~~~~~~--~~~~fD~Ii  273 (319)
                      .++.+|||++||+|.+++.++..  |+.+|+++|+++ .++.+++|++.|++.++ ++++++|+.++..  ..++||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            35689999999999999999984  557999999999 99999999999999666 9999999876532  135799999


Q ss_pred             eccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +++.+       ....++..+.+.|+|||++++++.
T Consensus       131 lDP~g-------~~~~~l~~a~~~Lk~gGll~~t~t  159 (392)
T 3axs_A          131 LDPFG-------TPVPFIESVALSMKRGGILSLTAT  159 (392)
T ss_dssp             ECCSS-------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ECCCc-------CHHHHHHHHHHHhCCCCEEEEEec
Confidence            99831       123577788889999998887763

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.10  E-value=9.8e-11  Score=110.84  Aligned_cols=100  Identities=21%  Similarity=0.107  Sum_probs=83.0

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc---------------CCCCcEEEEEcCccccc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN---------------KYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~---------------g~~~~i~~i~~d~~~~~  263 (319)
                      ++.+|||+|||+|.++..++.. +..+|+++|+++ +++.+++|++.+               ++ .+++++++|+....
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl-~~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE-KTIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS-SEEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC-CceEEEcCcHHHHH
Confidence            6789999999999999999986 667899999999 999999999998               77 34999999997753


Q ss_pred             c-CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         264 L-PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       264 ~-~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      . ..++||+|+.++++.       ...++..+.+.|+|||+++++.
T Consensus       126 ~~~~~~fD~I~lDP~~~-------~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          126 AERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhccCCCCEEEeCCCCC-------HHHHHHHHHHhcCCCCEEEEEe
Confidence            2 135799999887532       2467788888999999888764

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.08  E-value=2.3e-10  Score=102.59  Aligned_cols=89  Identities=9%  Similarity=0.160  Sum_probs=75.4

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.+++++..   .++++++++|+.+++++
T Consensus        15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~   90 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFS   90 (255)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHH
Confidence            5667778888888888999999999999999999986 5999999999 99999988765   26899999999988764


Q ss_pred             C----CceeEEEeccchhh
Q psy8709         266 V----ESVDIIISEWMGYF  280 (319)
Q Consensus       266 ~----~~fD~Iis~~~~~~  280 (319)
                      .    ++|| |++|.+++.
T Consensus        91 ~~~~~~~~~-vv~NlPY~i  108 (255)
T 3tqs_A           91 SVKTDKPLR-VVGNLPYNI  108 (255)
T ss_dssp             GSCCSSCEE-EEEECCHHH
T ss_pred             HhccCCCeE-EEecCCccc
Confidence            2    4688 888988653

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.08  E-value=2e-10  Score=107.37  Aligned_cols=101  Identities=11%  Similarity=0.133  Sum_probs=80.1

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      ...++.+|||+|||+|.++..+++. +..+++++|+ + +++.+++      . .+++++.+|+.+ ++|  .||+|++.
T Consensus       185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~p--~~D~v~~~  253 (352)
T 1fp2_A          185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFT-SIP--NADAVLLK  253 (352)
T ss_dssp             HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred             ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-CCcEEEeccccC-CCC--CccEEEee
Confidence            3455689999999999999999985 4569999999 7 8776653      2 459999999976 555  39999998


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCC---CcEEEeecCc
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKP---DGVVCPNRFT  310 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~Lkp---gG~li~~~~t  310 (319)
                      .+.|++.. .....+++++++.|||   ||++++....
T Consensus       254 ~~lh~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          254 YILHNWTD-KDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             SCGGGSCH-HHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             hhhccCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence            88776532 3445899999999999   9999876543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.07  E-value=3.3e-10  Score=102.41  Aligned_cols=99  Identities=17%  Similarity=0.183  Sum_probs=80.3

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+.+.+...++ +|||+|||+|.++..+++.+ .+|+|+|+++ +++.+++++..    .+++++++|+.+++++
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~  106 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWE  106 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGG
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChh
Confidence            5677778888888888 99999999999999999986 5999999999 99999887652    5899999999988765


Q ss_pred             C-CceeEEEeccchhhhcchhhHHHHHHH
Q psy8709         266 V-ESVDIIISEWMGYFLLFETMIDSVIDA  293 (319)
Q Consensus       266 ~-~~fD~Iis~~~~~~l~~~~~~~~~l~~  293 (319)
                      . ..+|.|++|.+++.  ..+.+.+++..
T Consensus       107 ~~~~~~~iv~NlPy~i--ss~il~~ll~~  133 (271)
T 3fut_A          107 EVPQGSLLVANLPYHI--ATPLVTRLLKT  133 (271)
T ss_dssp             GSCTTEEEEEEECSSC--CHHHHHHHHHH
T ss_pred             hccCccEEEecCcccc--cHHHHHHHhcC
Confidence            3 36899999988653  23445555554

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.07  E-value=6.3e-11  Score=99.44  Aligned_cols=90  Identities=14%  Similarity=0.111  Sum_probs=73.4

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc---CCCceeEE
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL---PVESVDII  272 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~---~~~~fD~I  272 (319)
                      +...++.+|||+|||.               +++|+|+ |++.|+++..     .+++++.+|+.++++   +.++||+|
T Consensus         8 ~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~V   67 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDII   67 (176)
T ss_dssp             TTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred             cCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeEE
Confidence            4566789999999996               2399999 9999987753     248899999998876   67899999


Q ss_pred             EeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ++....+++.  .+...++++++++|||||++++..
T Consensus        68 ~~~~~l~~~~--~~~~~~l~~~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           68 LSGLVPGSTT--LHSAEILAEIARILRPGGCLFLKE  101 (176)
T ss_dssp             EECCSTTCCC--CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECChhhhcc--cCHHHHHHHHHHHCCCCEEEEEEc
Confidence            9987776651  335789999999999999999854

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.99  E-value=1.4e-09  Score=110.65  Aligned_cols=127  Identities=13%  Similarity=-0.009  Sum_probs=97.1

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC----------------------------------------
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG----------------------------------------  223 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g----------------------------------------  223 (319)
                      +..+.+...++......++..|||.+||+|.+++.++..+                                        
T Consensus       173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~  252 (703)
T 3v97_A          173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL  252 (703)
T ss_dssp             SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence            4457888888888888888999999999999998877631                                        


Q ss_pred             ---CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC--CCceeEEEeccchhhh-cchhhHHHHHHH---
Q psy8709         224 ---AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP--VESVDIIISEWMGYFL-LFETMIDSVIDA---  293 (319)
Q Consensus       224 ---~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~--~~~fD~Iis~~~~~~l-~~~~~~~~~l~~---  293 (319)
                         ..+++|+|+++ +++.|+.|+..+|+.+.+++.++|+.++..+  .++||+|++|+++..- .....+..+.+.   
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~  332 (703)
T 3v97_A          253 AEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR  332 (703)
T ss_dssp             HHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred             ccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence               14799999999 9999999999999977899999999887544  2389999999986421 222344444444   


Q ss_pred             HhcccCCCcEEEeecCc
Q psy8709         294 RNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       294 ~~r~LkpgG~li~~~~t  310 (319)
                      +.+.+.|||.+++-+..
T Consensus       333 ~lk~~~~g~~~~ilt~~  349 (703)
T 3v97_A          333 IMKNQFGGWNLSLFSAS  349 (703)
T ss_dssp             HHHHHCTTCEEEEEESC
T ss_pred             HHHhhCCCCeEEEEeCC
Confidence            44455689998865544

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.96  E-value=6e-10  Score=104.36  Aligned_cols=100  Identities=14%  Similarity=0.179  Sum_probs=79.0

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      ..+..+|||||||+|.++..+++. +..+++++|++.+++.+++      . .+++++.+|+.+ ++|  .||+|++..+
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~~--~~D~v~~~~v  260 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------N-ENLNFVGGDMFK-SIP--SADAVLLKWV  260 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------C-SSEEEEECCTTT-CCC--CCSEEEEESC
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------C-CCcEEEeCccCC-CCC--CceEEEEccc
Confidence            345679999999999999999985 4558999999447665542      2 469999999987 555  4999999888


Q ss_pred             hhhhcchhhHHHHHHHHhcccCC---CcEEEeecC
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKP---DGVVCPNRF  309 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li~~~~  309 (319)
                      .|++.. .....+++++++.|+|   ||++++...
T Consensus       261 lh~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          261 LHDWND-EQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             GGGSCH-HHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             ccCCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            776533 3455999999999999   999887544

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.92  E-value=1.7e-09  Score=106.92  Aligned_cols=127  Identities=10%  Similarity=-0.084  Sum_probs=95.1

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc----C---------------CCEEEEEecHH-HHHHHHHHH
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA----G---------------AAKVFAIEKSD-IAYETIDII  243 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~----g---------------~~~V~gvD~s~-~i~~a~~~~  243 (319)
                      .+...+.+.+...+...++.+|+|.+||+|.+...+++.    +               ...++|+|+++ ++..|+.++
T Consensus       152 yTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl  231 (541)
T 2ar0_A          152 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC  231 (541)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHH
Confidence            344566677777777777889999999999998877753    1               13799999999 999999998


Q ss_pred             HhcCCCC----cEEEEEcCccccc-cCCCceeEEEeccchhhhcc-----------hhhHHHHHHHHhcccCCCcEEEee
Q psy8709         244 RKNKYDS----QIEVYHKLLEDVE-LPVESVDIIISEWMGYFLLF-----------ETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       244 ~~~g~~~----~i~~i~~d~~~~~-~~~~~fD~Iis~~~~~~l~~-----------~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ..++...    ++.+.++|....+ .+.++||+|++|+++.....           ......++..+.+.|+|||++.+-
T Consensus       232 ~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V  311 (541)
T 2ar0_A          232 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV  311 (541)
T ss_dssp             HTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence            8888743    2788899986543 33468999999998654321           111236888999999999998765


Q ss_pred             cCc
Q psy8709         308 RFT  310 (319)
Q Consensus       308 ~~t  310 (319)
                      .++
T Consensus       312 ~p~  314 (541)
T 2ar0_A          312 VPD  314 (541)
T ss_dssp             EEH
T ss_pred             ecC
Confidence            543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.91  E-value=1.6e-09  Score=98.79  Aligned_cols=98  Identities=18%  Similarity=0.130  Sum_probs=71.8

Q ss_pred             cccccCCCcceeeccCCC------chHHHHHHH-cC-CCEEEEEecHHHHHHHHHHHHhcCCCCcEEE-EEcCccccccC
Q psy8709         195 NNKSLFNNKHVIDVGAGT------GILSIFAAQ-AG-AAKVFAIEKSDIAYETIDIIRKNKYDSQIEV-YHKLLEDVELP  265 (319)
Q Consensus       195 ~~l~~~~~~~VLDiGcGt------G~ls~~la~-~g-~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~-i~~d~~~~~~~  265 (319)
                      ..+...++.+|||+|||+      |.  ..+++ .+ ..+|+|+|+++.            + .++++ +++|+.+.+++
T Consensus        57 ~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------------v-~~v~~~i~gD~~~~~~~  121 (290)
T 2xyq_A           57 LTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------------V-SDADSTLIGDCATVHTA  121 (290)
T ss_dssp             SCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------------B-CSSSEEEESCGGGCCCS
T ss_pred             hhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------------C-CCCEEEEECccccCCcc
Confidence            345667788999999954      66  33444 44 469999999993            1 36788 99999887655


Q ss_pred             CCceeEEEeccchhhh--------cchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         266 VESVDIIISEWMGYFL--------LFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l--------~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                       ++||+|+|+...++.        ........+++++.++|||||.|++..
T Consensus       122 -~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          122 -NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             -SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence             789999997542211        112345689999999999999999854

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.87  E-value=2e-09  Score=96.68  Aligned_cols=82  Identities=20%  Similarity=0.094  Sum_probs=62.7

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-H-------HHHHHHHHHhcCCCCcEEEEEcCcccc-c-cCC-
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-I-------AYETIDIIRKNKYDSQIEVYHKLLEDV-E-LPV-  266 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~-------i~~a~~~~~~~g~~~~i~~i~~d~~~~-~-~~~-  266 (319)
                      ...++.+|||+|||+|.++..+++.+. +|+|+|+++ +       ++.|+++++.+++.++++++++|+.++ + ++. 
T Consensus        80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           80 NHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             TGGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             CcCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            444568999999999999999999865 899999998 3       344555555556545699999999875 2 333 


Q ss_pred             -CceeEEEeccchhh
Q psy8709         267 -ESVDIIISEWMGYF  280 (319)
Q Consensus       267 -~~fD~Iis~~~~~~  280 (319)
                       ++||+|++++++..
T Consensus       159 ~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          159 QGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HCCCSEEEECCCC--
T ss_pred             CCCccEEEECCCCCC
Confidence             68999999987654

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.86  E-value=3.7e-09  Score=95.91  Aligned_cols=89  Identities=13%  Similarity=0.054  Sum_probs=71.9

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCC---EEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAA---KVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~---~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ..+.+.+++.+...++.+|||||||+|.++..+++.+..   +|+|+|+++ +++.++++.     ..+++++++|+.++
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF  102 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence            566777777788888899999999999999999987542   299999999 999998873     26899999999988


Q ss_pred             ccCCC------ceeEEEeccchhh
Q psy8709         263 ELPVE------SVDIIISEWMGYF  280 (319)
Q Consensus       263 ~~~~~------~fD~Iis~~~~~~  280 (319)
                      +++.-      ....|++|.+++.
T Consensus       103 ~~~~~~~~~~~~~~~vv~NlPY~i  126 (279)
T 3uzu_A          103 DFGSIARPGDEPSLRIIGNLPYNI  126 (279)
T ss_dssp             CGGGGSCSSSSCCEEEEEECCHHH
T ss_pred             ChhHhcccccCCceEEEEccCccc
Confidence            76521      3457889988653

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.85  E-value=2.5e-09  Score=95.44  Aligned_cols=88  Identities=19%  Similarity=0.252  Sum_probs=72.9

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL  264 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~  264 (319)
                      ...+.+.+.+.+...++.+|||+|||+|.++..+++.+..+|+|+|+++ +++.++++    + ..+++++++|+.++++
T Consensus        16 d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~   90 (249)
T 3ftd_A           16 SEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPF   90 (249)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCG
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCCh
Confidence            3567778888888888899999999999999999998767999999999 88888765    1 2589999999998876


Q ss_pred             CC--CceeEEEeccchh
Q psy8709         265 PV--ESVDIIISEWMGY  279 (319)
Q Consensus       265 ~~--~~fD~Iis~~~~~  279 (319)
                      +.  +.+ .|++|.+++
T Consensus        91 ~~~~~~~-~vv~NlPy~  106 (249)
T 3ftd_A           91 CSLGKEL-KVVGNLPYN  106 (249)
T ss_dssp             GGSCSSE-EEEEECCTT
T ss_pred             hHccCCc-EEEEECchh
Confidence            53  234 788888865

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.85  E-value=3.3e-09  Score=97.26  Aligned_cols=87  Identities=13%  Similarity=0.213  Sum_probs=70.9

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--c
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--L  264 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~  264 (319)
                      +.+.+++.+...++.+|||+|||+|.++..+++. +..+|+|+|.|+ +++.|++++..++  .+++++++|+.+++  +
T Consensus        14 Ll~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l   91 (301)
T 1m6y_A           14 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLL   91 (301)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHH
Confidence            3444555556677889999999999999999986 356999999999 9999999988876  58999999998764  2


Q ss_pred             C---CCceeEEEeccc
Q psy8709         265 P---VESVDIIISEWM  277 (319)
Q Consensus       265 ~---~~~fD~Iis~~~  277 (319)
                      +   ..+||.|++++.
T Consensus        92 ~~~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           92 KTLGIEKVDGILMDLG  107 (301)
T ss_dssp             HHTTCSCEEEEEEECS
T ss_pred             HhcCCCCCCEEEEcCc
Confidence            2   157999998764

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.82  E-value=2.5e-08  Score=86.03  Aligned_cols=99  Identities=10%  Similarity=0.073  Sum_probs=77.3

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC--CCcEEEEEcCcccc---------------
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY--DSQIEVYHKLLEDV---------------  262 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~--~~~i~~i~~d~~~~---------------  262 (319)
                      +.++|||+||  |+-+..+++...++|+++|.++ ..+.|+++++..|+  .++++++.+|+.+.               
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            4579999998  5777788875356999999999 99999999999998  78999999996542               


Q ss_pred             c--------c-CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         263 E--------L-PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       263 ~--------~-~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +        . ..++||+|+.+.-..        ...+..+.++|+|||+++++..
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~~l~~l~~GG~Iv~DNv  155 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALATAFSITRPVTLLFDDY  155 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHHHHHHCSSCEEEEETTG
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHHHHHhcCCCeEEEEeCC
Confidence            1        1 136899999876311        2444556689999999998764

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.80  E-value=2.7e-09  Score=95.45  Aligned_cols=87  Identities=9%  Similarity=0.060  Sum_probs=68.5

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCE--EEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAK--VFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~--V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ..+.+.+.+.+...++.+|||+|||+|.++. +.+ + .+  |+|+|+++ +++.+++++...   ++++++++|+.+++
T Consensus         7 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~   80 (252)
T 1qyr_A            7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFN   80 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCC
Confidence            4566677777777788899999999999999 655 3 36  99999999 998888765432   58999999999876


Q ss_pred             cCC-----CceeEEEeccchh
Q psy8709         264 LPV-----ESVDIIISEWMGY  279 (319)
Q Consensus       264 ~~~-----~~fD~Iis~~~~~  279 (319)
                      ++.     +..+.|++|.+++
T Consensus        81 ~~~~~~~~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           81 FGELAEKMGQPLRVFGNLPYN  101 (252)
T ss_dssp             HHHHHHHHTSCEEEEEECCTT
T ss_pred             HHHhhcccCCceEEEECCCCC
Confidence            542     2357999998854

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.77  E-value=2.2e-08  Score=98.87  Aligned_cols=126  Identities=10%  Similarity=-0.102  Sum_probs=93.0

Q ss_pred             cHHHHHHHHhcccc----cCCCcceeeccCCCchHHHHHHHc----CCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEE
Q psy8709         185 RTESYKSAILNNKS----LFNNKHVIDVGAGTGILSIFAAQA----GAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEV  254 (319)
Q Consensus       185 ~~~~~~~~i~~~l~----~~~~~~VLDiGcGtG~ls~~la~~----g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~  254 (319)
                      +...+.+.+...+.    ..++.+|+|.+||+|.+...+++.    +...++|+|+++ ++..|+.++..+|.. +++.+
T Consensus       201 TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I  280 (542)
T 3lkd_A          201 TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFL  280 (542)
T ss_dssp             CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccce
Confidence            34555555555554    456779999999999998887774    346899999999 999999998888875 47899


Q ss_pred             EEcCcccc--c-cCCCceeEEEeccchhhhcc-h------------------h-hHHHHHHHHhcccC-CCcEEEeecCc
Q psy8709         255 YHKLLEDV--E-LPVESVDIIISEWMGYFLLF-E------------------T-MIDSVIDARNRFLK-PDGVVCPNRFT  310 (319)
Q Consensus       255 i~~d~~~~--~-~~~~~fD~Iis~~~~~~l~~-~------------------~-~~~~~l~~~~r~Lk-pgG~li~~~~t  310 (319)
                      .++|....  + .+..+||+|++|+|+..-.. .                  . .--.++..+.+.|+ |||++.+-.+.
T Consensus       281 ~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~  360 (542)
T 3lkd_A          281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH  360 (542)
T ss_dssp             EESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred             EecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence            99998765  2 34578999999998642110 0                  0 01247889999999 99998654444

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.76  E-value=7.6e-09  Score=102.23  Aligned_cols=126  Identities=11%  Similarity=-0.055  Sum_probs=91.5

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--------C--------CCEEEEEecHH-HHHHHHHHHHh
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--------G--------AAKVFAIEKSD-IAYETIDIIRK  245 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--------g--------~~~V~gvD~s~-~i~~a~~~~~~  245 (319)
                      -.+...+.+.+...+...++ +|+|.+||+|.+...+++.        .        ...++|+|+++ ++..|+.++..
T Consensus       227 fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l  305 (544)
T 3khk_A          227 YYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI  305 (544)
T ss_dssp             TCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH
Confidence            34456677777777665554 9999999999998776542        0        34899999999 99999999988


Q ss_pred             cCCCCcEEEEEcCccccc-cCCCceeEEEeccchhhh-------------------------cchh-hHHHHHHHHhccc
Q psy8709         246 NKYDSQIEVYHKLLEDVE-LPVESVDIIISEWMGYFL-------------------------LFET-MIDSVIDARNRFL  298 (319)
Q Consensus       246 ~g~~~~i~~i~~d~~~~~-~~~~~fD~Iis~~~~~~l-------------------------~~~~-~~~~~l~~~~r~L  298 (319)
                      +|+..++.+.++|....+ .+..+||+|++|+|+..-                         .... .--.++..+.+.|
T Consensus       306 ~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~L  385 (544)
T 3khk_A          306 RGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHL  385 (544)
T ss_dssp             TTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTE
T ss_pred             hCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHh
Confidence            888666555788875543 345789999999987531                         0000 1125788899999


Q ss_pred             CCCcEEEeecC
Q psy8709         299 KPDGVVCPNRF  309 (319)
Q Consensus       299 kpgG~li~~~~  309 (319)
                      +|||++.+-.+
T Consensus       386 k~gGr~aiVlP  396 (544)
T 3khk_A          386 APTGSMALLLA  396 (544)
T ss_dssp             EEEEEEEEEEE
T ss_pred             ccCceEEEEec
Confidence            99999765543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.76  E-value=7e-09  Score=98.76  Aligned_cols=78  Identities=18%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc--CCCCcEEEEEcCcccc-cc-CCCceeEEEec
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN--KYDSQIEVYHKLLEDV-EL-PVESVDIIISE  275 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~--g~~~~i~~i~~d~~~~-~~-~~~~fD~Iis~  275 (319)
                      ++.+|||+|||+|..+..+++.+. +|+++|+++ +++.|+++++.+  |+ ++++++++|+.+. +. +.++||+|+++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            368999999999999999998865 999999999 999999999988  77 7899999999875 21 23589999999


Q ss_pred             cchhh
Q psy8709         276 WMGYF  280 (319)
Q Consensus       276 ~~~~~  280 (319)
                      ++...
T Consensus       171 PPrr~  175 (410)
T 3ll7_A          171 PARRS  175 (410)
T ss_dssp             CEEC-
T ss_pred             CCCcC
Confidence            87543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.70  E-value=1.1e-08  Score=91.62  Aligned_cols=86  Identities=15%  Similarity=0.189  Sum_probs=65.3

Q ss_pred             HhcccccCCC--cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc-------C-CCCcEEEEEcCccc
Q psy8709         193 ILNNKSLFNN--KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN-------K-YDSQIEVYHKLLED  261 (319)
Q Consensus       193 i~~~l~~~~~--~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~-------g-~~~~i~~i~~d~~~  261 (319)
                      +.+.+...++  .+|||+|||+|..+..+++.|. +|+++|.++ ++..++++++..       + +..+++++++|..+
T Consensus        78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~  156 (258)
T 2oyr_A           78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT  156 (258)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred             HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence            3334445556  8999999999999999999876 799999999 776666654321       2 22579999999987


Q ss_pred             c-c-cCCCceeEEEeccchhh
Q psy8709         262 V-E-LPVESVDIIISEWMGYF  280 (319)
Q Consensus       262 ~-~-~~~~~fD~Iis~~~~~~  280 (319)
                      + + ++ ++||+|++++++..
T Consensus       157 ~L~~~~-~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          157 ALTDIT-PRPQVVYLDPMFPH  176 (258)
T ss_dssp             HSTTCS-SCCSEEEECCCCCC
T ss_pred             HHHhCc-ccCCEEEEcCCCCC
Confidence            5 2 33 47999999998754

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.69  E-value=4.3e-08  Score=91.83  Aligned_cols=117  Identities=19%  Similarity=0.091  Sum_probs=91.3

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCC-----CcEEEEEcCccccc-cCCCc
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYD-----SQIEVYHKLLEDVE-LPVES  268 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~-----~~i~~i~~d~~~~~-~~~~~  268 (319)
                      +...+|.+|||+++|.|.-+..++..+ ...|+++|+++ -+...+++++..+..     .++.+...|...+. ...+.
T Consensus       144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~  223 (359)
T 4fzv_A          144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT  223 (359)
T ss_dssp             HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred             hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence            467788999999999999999998864 35799999999 888888888876542     57889999987764 34478


Q ss_pred             eeEEEeccchhh----hcc----------h-------hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         269 VDIIISEWMGYF----LLF----------E-------TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       269 fD~Iis~~~~~~----l~~----------~-------~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ||.|+.+.+...    ...          .       .....+|..+.++|||||+|+.++||+..
T Consensus       224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~  289 (359)
T 4fzv_A          224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH  289 (359)
T ss_dssp             EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred             CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence            999998765321    110          1       11356788999999999999999999863

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.59  E-value=1.1e-07  Score=86.53  Aligned_cols=114  Identities=16%  Similarity=0.180  Sum_probs=85.7

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc--C--CCCcEEEEEcCccccc-cCCCceeEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN--K--YDSQIEVYHKLLEDVE-LPVESVDII  272 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~--g--~~~~i~~i~~d~~~~~-~~~~~fD~I  272 (319)
                      .+.++||-||.|.|..+..+++. +..+|+.+|+++ +++.+++.+...  +  -.++++++.+|....- ...++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            44579999999999999999996 567999999999 999998876431  1  1368999999998763 345789999


Q ss_pred             Eeccchhhhcchh-hHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         273 ISEWMGYFLLFET-MIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       273 is~~~~~~l~~~~-~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      |.+..-..-.... .-..+++.+++.|+|||+++....+.++
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~  203 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFL  203 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSS
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCccc
Confidence            9875321110100 1246789999999999999987666554

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.58  E-value=8.4e-08  Score=85.90  Aligned_cols=117  Identities=14%  Similarity=0.121  Sum_probs=76.2

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      ..+.+...+.++.+|||+|||+|.++..++.. +...++|+|++. +...... ....+  .++..+.++++...++.++
T Consensus        64 ~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~g--~~ii~~~~~~dv~~l~~~~  140 (277)
T 3evf_A           64 RWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSLG--WNIITFKDKTDIHRLEPVK  140 (277)
T ss_dssp             HHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBTT--GGGEEEECSCCTTTSCCCC
T ss_pred             HHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcCC--CCeEEEeccceehhcCCCC
Confidence            33434455677789999999999999998875 667888888884 2100000 00011  1455567776555667789


Q ss_pred             eeEEEeccchh---hhcchhhHHHHHHHHhcccCCC-cEEEeecCc
Q psy8709         269 VDIIISEWMGY---FLLFETMIDSVIDARNRFLKPD-GVVCPNRFT  310 (319)
Q Consensus       269 fD~Iis~~~~~---~l~~~~~~~~~l~~~~r~Lkpg-G~li~~~~t  310 (319)
                      ||+|+|+.+.+   ..........++..+.++|+|| |.|++....
T Consensus       141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            99999987443   1111112223578889999999 999986544

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.54  E-value=1.5e-07  Score=95.69  Aligned_cols=114  Identities=8%  Similarity=-0.033  Sum_probs=78.4

Q ss_pred             CCCcceeeccCCCchHHHHHHHcC----CCEEEEEecHH-HHHHH--HHHHHhcCCC---CcEEEEEcCccccc-cCCCc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAG----AAKVFAIEKSD-IAYET--IDIIRKNKYD---SQIEVYHKLLEDVE-LPVES  268 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g----~~~V~gvD~s~-~i~~a--~~~~~~~g~~---~~i~~i~~d~~~~~-~~~~~  268 (319)
                      .++.+|||.|||+|.+...+++..    ..+++|+|+++ ++..|  +.++..+++.   ....+...|+.... .+..+
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k  399 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN  399 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence            356799999999999999988752    24799999999 88888  5444442221   22355566665532 23468


Q ss_pred             eeEEEeccchhhhcc-h-------------------------hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         269 VDIIISEWMGYFLLF-E-------------------------TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       269 fD~Iis~~~~~~l~~-~-------------------------~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ||+|++|+|+..... .                         .....++..+.++|+|||++.+-.++-++
T Consensus       400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~L  470 (878)
T 3s1s_A          400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYL  470 (878)
T ss_dssp             EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHH
T ss_pred             CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHh
Confidence            999999998732110 0                         11345788889999999998876655444

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.43  E-value=9e-07  Score=80.14  Aligned_cols=106  Identities=11%  Similarity=0.103  Sum_probs=82.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHc------CCCEEEEEecH--------------------------H-HHHHHHHHHHhc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA------GAAKVFAIEKS--------------------------D-IAYETIDIIRKN  246 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~------g~~~V~gvD~s--------------------------~-~i~~a~~~~~~~  246 (319)
                      ...+.|||+|+..|..+..++..      ...+|+++|..                          + .++.++++++..
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            44579999999999988887652      25689999953                          1 356788999999


Q ss_pred             CCC-CcEEEEEcCccccc--cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         247 KYD-SQIEVYHKLLEDVE--LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       247 g~~-~~i~~i~~d~~~~~--~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      |+. ++++++.|++.+.-  ++.++||+|+.+.-.+     ......|..+...|+|||+++++...
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y-----~~~~~~Le~~~p~L~pGGiIv~DD~~  246 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY-----ESTWDTLTNLYPKVSVGGYVIVDDYM  246 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH-----HHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc-----ccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence            984 89999999997642  3446899999876321     33456788999999999999998763

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.41  E-value=1.4e-06  Score=81.97  Aligned_cols=108  Identities=11%  Similarity=0.073  Sum_probs=71.9

Q ss_pred             CcceeeccCCCchHHHHHHHc----------------CCCEEEEEecHH-HHHHHHHHHHhcC-----------C--C-C
Q psy8709         202 NKHVIDVGAGTGILSIFAAQA----------------GAAKVFAIEKSD-IAYETIDIIRKNK-----------Y--D-S  250 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~----------------g~~~V~gvD~s~-~i~~a~~~~~~~g-----------~--~-~  250 (319)
                      ..+|+|+|||+|.++..+...                +.-+|+..|+.. .....-+.+....           .  . -
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            478999999999998876221                223677777766 4333333322210           0  0 0


Q ss_pred             cEEEEEcCccccccCCCceeEEEeccchhhhcch-----------------------------------hhHHHHHHHHh
Q psy8709         251 QIEVYHKLLEDVELPVESVDIIISEWMGYFLLFE-----------------------------------TMIDSVIDARN  295 (319)
Q Consensus       251 ~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~-----------------------------------~~~~~~l~~~~  295 (319)
                      -+.-+.+.+..-.+|.++||+|+|+..+||+...                                   .++..+|+.++
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1222334444445788999999999999998621                                   15677899999


Q ss_pred             cccCCCcEEEeecC
Q psy8709         296 RFLKPDGVVCPNRF  309 (319)
Q Consensus       296 r~LkpgG~li~~~~  309 (319)
                      +.|+|||+++++..
T Consensus       213 ~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          213 AEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHEEEEEEEEEEEE
T ss_pred             HHhCCCCEEEEEEe
Confidence            99999999997654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.32  E-value=1.7e-07  Score=84.01  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      ...+.+...+.++.+|||+|||.|.++..+++ .+...|+|+|++. +...+...   .....++..+..++....++..
T Consensus        79 L~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~---~~~g~~ii~~~~~~dv~~l~~~  155 (282)
T 3gcz_A           79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR---TTLGWNLIRFKDKTDVFNMEVI  155 (282)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC---CBTTGGGEEEECSCCGGGSCCC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc---ccCCCceEEeeCCcchhhcCCC
Confidence            33444444667888999999999999999886 5777899999986 32111100   0011244444444443445668


Q ss_pred             ceeEEEeccchh----hhcchhhHHHHHHHHhcccCCC--cEEEeecCc
Q psy8709         268 SVDIIISEWMGY----FLLFETMIDSVIDARNRFLKPD--GVVCPNRFT  310 (319)
Q Consensus       268 ~fD~Iis~~~~~----~l~~~~~~~~~l~~~~r~Lkpg--G~li~~~~t  310 (319)
                      ++|+|+|+.+-+    .. .......+|.-+.++|+||  |.|++-...
T Consensus       156 ~~DvVLSDmApnsG~~~~-D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          156 PGDTLLCDIGESSPSIAV-EEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             CCSEEEECCCCCCSCHHH-HHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             CcCEEEecCccCCCChHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            999999986544    11 1111223577788999999  999865443

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.30  E-value=7.6e-07  Score=83.49  Aligned_cols=112  Identities=16%  Similarity=0.137  Sum_probs=81.6

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc---CC----CCcEEEEEcCccccc----cCCCc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN---KY----DSQIEVYHKLLEDVE----LPVES  268 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~---g~----~~~i~~i~~d~~~~~----~~~~~  268 (319)
                      +.++||-+|.|.|.....+.+.+..+|+.+|+++ +++.+++.+...   .+    .++++++.+|....-    -..++
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            4579999999999999999998778999999999 999998865321   11    246899999986542    13468


Q ss_pred             eeEEEeccchhhh-------cchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         269 VDIIISEWMGYFL-------LFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       269 fD~Iis~~~~~~l-------~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ||+||.+..-...       ...---..+++.+++.|+|||+++....+.+
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~  335 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVN  335 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETT
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCc
Confidence            9999987421100       0011235788999999999999987654443

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.26  E-value=2.4e-06  Score=79.82  Aligned_cols=72  Identities=13%  Similarity=0.161  Sum_probs=59.2

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      +.+|.++||+||++|.++..+++.|. +|+|||+.+|-...    ...   ++|+++.+|+.....+..+||+|+|+...
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l----~~~---~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSL----MDT---GQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHH----HTT---TCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhh----ccC---CCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            56789999999999999999999976 99999988733222    122   58999999998887776789999998764

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.23  E-value=1.6e-06  Score=77.47  Aligned_cols=106  Identities=15%  Similarity=0.129  Sum_probs=69.4

Q ss_pred             CCcceeeccCCCchHHHHHHHc-------CC------CEEEEEecHH----HHH-----------HHHHHHHhc------
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-------GA------AKVFAIEKSD----IAY-----------ETIDIIRKN------  246 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-------g~------~~V~gvD~s~----~i~-----------~a~~~~~~~------  246 (319)
                      +..+|||+|+|+|..+..+++.       +.      .+++++|..+    .+.           .+++++...      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3469999999999988775542       21      4899999754    222           445555431      


Q ss_pred             ----CC---CCcEEEEEcCcccc-c-cCC---CceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         247 ----KY---DSQIEVYHKLLEDV-E-LPV---ESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       247 ----g~---~~~i~~i~~d~~~~-~-~~~---~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                          .+   ..+++++.+|+.+. + .+.   ..||+|+.++....-.++---..++..+.++|+|||+|+.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                01   14788999998774 2 221   2799999875321111111135789999999999999984

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.22  E-value=1.7e-06  Score=81.55  Aligned_cols=108  Identities=12%  Similarity=0.056  Sum_probs=69.5

Q ss_pred             CcceeeccCCCchHHHHHHHc------------------CCCEEEEEecHH--H------HHHHHHHH-HhcCCCCcEEE
Q psy8709         202 NKHVIDVGAGTGILSIFAAQA------------------GAAKVFAIEKSD--I------AYETIDII-RKNKYDSQIEV  254 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~------------------g~~~V~gvD~s~--~------i~~a~~~~-~~~g~~~~i~~  254 (319)
                      ..+|+|+||++|..+..+...                  +.-+|+..|+..  .      +....+.+ +..|...+..|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            368999999999998866553                  123677777662  1      11111111 22222112345


Q ss_pred             EEcCc---cccccCCCceeEEEeccchhhhcchh------------------------------------hHHHHHHHHh
Q psy8709         255 YHKLL---EDVELPVESVDIIISEWMGYFLLFET------------------------------------MIDSVIDARN  295 (319)
Q Consensus       255 i~~d~---~~~~~~~~~fD~Iis~~~~~~l~~~~------------------------------------~~~~~l~~~~  295 (319)
                      +.+..   ..-.+|.+++|+|+|+..+||+...+                                    ++..+|+.+.
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55443   33467889999999999999975322                                    2334588889


Q ss_pred             cccCCCcEEEeecC
Q psy8709         296 RFLKPDGVVCPNRF  309 (319)
Q Consensus       296 r~LkpgG~li~~~~  309 (319)
                      +.|+|||+++++..
T Consensus       213 ~eL~pGG~mvl~~~  226 (384)
T 2efj_A          213 EELISRGRMLLTFI  226 (384)
T ss_dssp             HHEEEEEEEEEEEE
T ss_pred             HHhccCCeEEEEEe
Confidence            99999999997754

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.19  E-value=3e-06  Score=76.29  Aligned_cols=82  Identities=13%  Similarity=0.140  Sum_probs=65.8

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----  263 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----  263 (319)
                      +.+.+++.+...++..+||.+||.|..+..+++. ..+|+|+|.++ +++.|++ +..    ++++++++++.++.    
T Consensus        10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A           10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHH
Confidence            3444555556677889999999999999999998 45999999999 8888887 533    58999999998874    


Q ss_pred             -cCCCceeEEEecc
Q psy8709         264 -LPVESVDIIISEW  276 (319)
Q Consensus       264 -~~~~~fD~Iis~~  276 (319)
                       ...++||.|+++.
T Consensus        84 ~~g~~~vDgIL~DL   97 (285)
T 1wg8_A           84 ALGVERVDGILADL   97 (285)
T ss_dssp             HTTCSCEEEEEEEC
T ss_pred             HcCCCCcCEEEeCC
Confidence             2235799999864

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.19  E-value=6.9e-06  Score=80.86  Aligned_cols=98  Identities=13%  Similarity=0.012  Sum_probs=74.7

Q ss_pred             CCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc----C----------CCEEEEEecHH-HHHHHHHHHHh
Q psy8709         181 GTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA----G----------AAKVFAIEKSD-IAYETIDIIRK  245 (319)
Q Consensus       181 ~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~----g----------~~~V~gvD~s~-~i~~a~~~~~~  245 (319)
                      +.-.+...+.+.+...+...++.+|+|..||+|.+...+.+.    .          ...++|+|+++ +...|+-++-.
T Consensus       197 GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l  276 (530)
T 3ufb_A          197 GEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL  276 (530)
T ss_dssp             CCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH
T ss_pred             ceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh
Confidence            344555778888888888888899999999999998776542    1          23699999999 88888888877


Q ss_pred             cCCCCcEEEEEcCcccccc----CCCceeEEEeccchh
Q psy8709         246 NKYDSQIEVYHKLLEDVEL----PVESVDIIISEWMGY  279 (319)
Q Consensus       246 ~g~~~~i~~i~~d~~~~~~----~~~~fD~Iis~~~~~  279 (319)
                      +|. +...+..+|....+.    +..+||+|++|+|+.
T Consensus       277 hg~-~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~  313 (530)
T 3ufb_A          277 HGL-EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFG  313 (530)
T ss_dssp             HTC-SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSS
T ss_pred             cCC-ccccccccccccCchhhhcccccceEEEecCCCC
Confidence            777 345677777755432    235799999999874

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.10  E-value=1.7e-05  Score=69.19  Aligned_cols=119  Identities=15%  Similarity=0.114  Sum_probs=77.2

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEc-Cc
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHK-LL  259 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~-d~  259 (319)
                      +.+.......+.+...+.++.+|||+||++|.++..++. .+..+|+|+|+-. -.+. -...+..|. +.++|+.+ |+
T Consensus        60 rSRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gw-n~v~fk~gvDv  137 (267)
T 3p8z_A           60 VSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGW-NIVKLMSGKDV  137 (267)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTT-TSEEEECSCCG
T ss_pred             cchHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCc-CceEEEeccce
Confidence            334444444555555677888999999999999998877 5777999999987 1100 001122344 67999999 98


Q ss_pred             cccccCCCceeEEEeccchhhhcch---hhHHHHHHHHhcccCCCcEEEe
Q psy8709         260 EDVELPVESVDIIISEWMGYFLLFE---TMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       260 ~~~~~~~~~fD~Iis~~~~~~l~~~---~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ..++.  .++|.|+|+..-..-..+   ..--.+|.-+.++|++ |.|++
T Consensus       138 ~~~~~--~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          138 FYLPP--EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             GGCCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             eecCC--ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence            65543  679999997532111111   1112367777899999 66654

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.03  E-value=3.7e-06  Score=78.63  Aligned_cols=109  Identities=12%  Similarity=0.125  Sum_probs=75.2

Q ss_pred             CCcceeeccCCCchHHHHHHHc-----------------CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEE---EcCc
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-----------------GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVY---HKLL  259 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-----------------g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i---~~d~  259 (319)
                      ...+|+|+||++|..+..+...                 +.-+|+..|+.. ....+.+.+.......+..|+   .+.+
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3468999999999877644332                 123788899888 666555554321100122343   3445


Q ss_pred             cccccCCCceeEEEeccchhhhcc------------------------------hhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         260 EDVELPVESVDIIISEWMGYFLLF------------------------------ETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       260 ~~~~~~~~~fD~Iis~~~~~~l~~------------------------------~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ..-.+|.+++|+|+|+...||+..                              ..++..+|+.+.+.|+|||+++++..
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            445688899999999999999753                              12466779999999999999997654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.98  E-value=5.9e-06  Score=73.03  Aligned_cols=115  Identities=12%  Similarity=0.094  Sum_probs=68.3

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CC----CEEEEEe--cHHHHHHHHHHHHhcCCCCcEEEE
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GA----AKVFAIE--KSDIAYETIDIIRKNKYDSQIEVY  255 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~----~~V~gvD--~s~~i~~a~~~~~~~g~~~~i~~i  255 (319)
                      +.+......+|.+..-+.++.+|||+||+.|.++..+++. +.    ..++|+|  +.|+..      ...|. .-++|+
T Consensus        55 RSRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~------~~~Gv-~~i~~~  127 (269)
T 2px2_A           55 VSRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM------QSYGW-NIVTMK  127 (269)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC------CSTTG-GGEEEE
T ss_pred             ccHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc------cCCCc-eEEEee
Confidence            3344333444444445677899999999999999999885 22    2455555  222000      00111 223555


Q ss_pred             Ec-CccccccCCCceeEEEeccch---hhhcchhhHHHHHHHHhcccCCCc-EEEe
Q psy8709         256 HK-LLEDVELPVESVDIIISEWMG---YFLLFETMIDSVIDARNRFLKPDG-VVCP  306 (319)
Q Consensus       256 ~~-d~~~~~~~~~~fD~Iis~~~~---~~l~~~~~~~~~l~~~~r~LkpgG-~li~  306 (319)
                      .+ |+.++.  ..++|+|+|+..-   +..........+|.-+.++|+||| .|++
T Consensus       128 ~G~Df~~~~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv  181 (269)
T 2px2_A          128 SGVDVFYKP--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI  181 (269)
T ss_dssp             CSCCGGGSC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             ccCCccCCC--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence            57 997743  4689999997632   221111111126777779999999 7775

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.97  E-value=1.8e-05  Score=71.43  Aligned_cols=109  Identities=17%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      +.++.+|||+||++|.++..+++. +...|+|+|+.. +...... .  .....++......+....++.+++|+|+|+.
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~--~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~  155 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-M--QTLGWNIVKFKDKSNVFTMPTEPSDTLLCDI  155 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-C--CBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-c--cccCCceEEeecCceeeecCCCCcCEEeecC
Confidence            457789999999999999999984 677899999975 2100000 0  0001133333333333345557899999976


Q ss_pred             chh---hhcchhhHHHHHHHHhcccCCC-cEEEeecCc
Q psy8709         277 MGY---FLLFETMIDSVIDARNRFLKPD-GVVCPNRFT  310 (319)
Q Consensus       277 ~~~---~l~~~~~~~~~l~~~~r~Lkpg-G~li~~~~t  310 (319)
                      .-+   +.........+|.-+.++|+|| |.|++-...
T Consensus       156 APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          156 GESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            544   1111112234577788999999 999975443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.93  E-value=2.7e-05  Score=70.00  Aligned_cols=120  Identities=15%  Similarity=0.128  Sum_probs=75.8

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEc-Cccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHK-LLED  261 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~-d~~~  261 (319)
                      +.......+.+...+.++.+|||+||++|.++..++. .|+.+|+|+|+.. -.+.- ...+..+. .-+.++.+ |+..
T Consensus        78 R~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~~  155 (321)
T 3lkz_A           78 RGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVFY  155 (321)
T ss_dssp             THHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTTS
T ss_pred             hHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHhh
Confidence            3333444555556677888999999999999997777 5777999999987 11000 00011122 35788887 8766


Q ss_pred             cccCCCceeEEEeccchhhhcch---hhHHHHHHHHhcccCCC-cEEEeec
Q psy8709         262 VELPVESVDIIISEWMGYFLLFE---TMIDSVIDARNRFLKPD-GVVCPNR  308 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~~---~~~~~~l~~~~r~Lkpg-G~li~~~  308 (319)
                      ++.  .++|+|+|+..-..-...   ..--.+|.-+.++|++| |-|++-.
T Consensus       156 l~~--~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KV  204 (321)
T 3lkz_A          156 RPS--ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKV  204 (321)
T ss_dssp             SCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCC--CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEE
Confidence            553  679999997531110111   11123677778999998 8777533

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.87  E-value=1.6e-05  Score=64.48  Aligned_cols=72  Identities=13%  Similarity=0.162  Sum_probs=53.1

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCc-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTG-ILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG-~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      +.+.+.+.+...  ++.+|||||||.| ..+..+++ .|. .|+++|+++ .+.                +++.|+.+..
T Consensus        23 e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~   83 (153)
T 2k4m_A           23 NDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPR   83 (153)
T ss_dssp             HHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCC
T ss_pred             HHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCc
Confidence            456666655542  3469999999999 69999997 776 899999999 322                8889987744


Q ss_pred             cCC-CceeEEEe-ccc
Q psy8709         264 LPV-ESVDIIIS-EWM  277 (319)
Q Consensus       264 ~~~-~~fD~Iis-~~~  277 (319)
                      +.. +.||+|.+ +++
T Consensus        84 ~~~Y~~~DLIYsirPP   99 (153)
T 2k4m_A           84 MEIYRGAALIYSIRPP   99 (153)
T ss_dssp             HHHHTTEEEEEEESCC
T ss_pred             ccccCCcCEEEEcCCC
Confidence            321 48999975 443

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.77  E-value=4.3e-06  Score=75.32  Aligned_cols=149  Identities=13%  Similarity=0.089  Sum_probs=94.9

Q ss_pred             CCCCCeEEEecCCCChhhHHH---HhcC-----CceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFA---AQAG-----AAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSI  217 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~a---a~~g-----a~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~  217 (319)
                      --++-+++|--+|.|...+..   .+.|     -.++... ..+.+..-..+.+.+..    .++..+||+-+|+|.+++
T Consensus        33 K~kp~~~iDTHAG~G~Y~L~~~~a~ktgE~~~GI~rl~~~-~~~~p~~l~~yf~~l~~----~n~~~~LDlfaGSGaLgi  107 (283)
T 2oo3_A           33 KDKPLFYLETHSGRGIYDLKDKQSLKTEEYKEGINPVWLD-RENLPSLFLEYISVIKQ----INLNSTLSYYPGSPYFAI  107 (283)
T ss_dssp             SSSCCEEEESCCTTSEEETTCC----CCGGGGTHHHHHHT-GGGSCGGGHHHHHHHHH----HSSSSSCCEEECHHHHHH
T ss_pred             CCCCeEEEEcCCCcCccCCCChHHhhcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHH----hcCCCceeEeCCcHHHHH
Confidence            346779999999999887632   2333     1111110 01122222334444433    345689999999999999


Q ss_pred             HHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-c---cCCCceeEEEeccchhhhcchhhHHHHHH
Q psy8709         218 FAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-E---LPVESVDIIISEWMGYFLLFETMIDSVID  292 (319)
Q Consensus       218 ~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~  292 (319)
                      .+.+. ..+++.+|.++ .++..+++++.   ..++++++.|.... .   .+..+||+|+.++++..   .....+++.
T Consensus       108 EaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~---k~~~~~vl~  180 (283)
T 2oo3_A          108 NQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYER---KEEYKEIPY  180 (283)
T ss_dssp             HHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCS---TTHHHHHHH
T ss_pred             HHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCC---CcHHHHHHH
Confidence            99995 47999999999 65555555543   36899999997542 1   23457999999998642   134555555


Q ss_pred             HHhc--ccCCCcEEEe
Q psy8709         293 ARNR--FLKPDGVVCP  306 (319)
Q Consensus       293 ~~~r--~LkpgG~li~  306 (319)
                      .+.+  .+.|+|++++
T Consensus       181 ~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          181 AIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             HHHHHHHHCTTSEEEE
T ss_pred             HHHHhCccCCCeEEEE
Confidence            4443  5568888764

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.65  E-value=0.00011  Score=66.70  Aligned_cols=58  Identities=24%  Similarity=0.223  Sum_probs=48.8

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN  246 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~  246 (319)
                      ..+.+.++.... .++..|||++||+|.++..+++.|. +++|+|+++ +++.|++++...
T Consensus       222 ~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          222 LELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            456666665554 5678999999999999999999875 999999999 999999988764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.59  E-value=5.3e-05  Score=71.31  Aligned_cols=30  Identities=70%  Similarity=1.057  Sum_probs=28.2

Q ss_pred             EEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         153 IDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ||+|||+|+++++||+.||++|+|+|.++.
T Consensus        88 LDvG~GtGiLs~~Aa~aGA~~V~ave~s~~  117 (376)
T 4hc4_A           88 LDVGAGTGILSIFCAQAGARRVYAVEASAI  117 (376)
T ss_dssp             EEETCTTSHHHHHHHHTTCSEEEEEECSTT
T ss_pred             EEeCCCccHHHHHHHHhCCCEEEEEeChHH
Confidence            899999999999999999999999998753

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.21  E-value=0.00062  Score=61.23  Aligned_cols=95  Identities=17%  Similarity=0.102  Sum_probs=63.3

Q ss_pred             cccCCCcceeeccC------CCchHHHHHHHcCC--CEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         197 KSLFNNKHVIDVGA------GTGILSIFAAQAGA--AKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       197 l~~~~~~~VLDiGc------GtG~ls~~la~~g~--~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      +..+.+.+|||+|+      ..|.  ..+.+.+.  ..|+++|+.++.          .. .. .++++|....... .+
T Consensus       105 ~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~----------sd-a~-~~IqGD~~~~~~~-~k  169 (344)
T 3r24_A          105 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV----------SD-AD-STLIGDCATVHTA-NK  169 (344)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB----------CS-SS-EEEESCGGGEEES-SC
T ss_pred             EeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccc----------cC-CC-eEEEccccccccC-CC
Confidence            44567889999997      4555  33444333  399999999921          01 12 4599998765543 78


Q ss_pred             eeEEEeccc----hhhhc----chhhHHHHHHHHhcccCCCcEEEe
Q psy8709         269 VDIIISEWM----GYFLL----FETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       269 fD~Iis~~~----~~~l~----~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ||+|+|+..    ++.-.    .....+.++.-+.+.|+|||.|++
T Consensus       170 ~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvV  215 (344)
T 3r24_A          170 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV  215 (344)
T ss_dssp             EEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence            999999753    22000    112456677788899999999984

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.20  E-value=0.00065  Score=59.43  Aligned_cols=42  Identities=26%  Similarity=0.369  Sum_probs=36.4

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ...++++|||+|||+|.++..+++.|+.+|+|+|+++.....
T Consensus        34 ~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~   75 (232)
T 3opn_A           34 LEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAW   75 (232)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCH
T ss_pred             CCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHH
Confidence            345678999999999999999998898899999999876664

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.15  E-value=0.00073  Score=62.19  Aligned_cols=83  Identities=16%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--  263 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--  263 (319)
                      +.+.++..+...++..++|..||.|..+..+++.  +.++|+|+|.++ +++.++ ++    ..++++++++++.++.  
T Consensus        45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~  119 (347)
T 3tka_A           45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEY  119 (347)
T ss_dssp             TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHH
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHH
Confidence            3445555666778899999999999999999985  356999999999 877773 32    2368999999998873  


Q ss_pred             cC---C-CceeEEEecc
Q psy8709         264 LP---V-ESVDIIISEW  276 (319)
Q Consensus       264 ~~---~-~~fD~Iis~~  276 (319)
                      ++   . +++|.|+.+.
T Consensus       120 L~~~g~~~~vDgILfDL  136 (347)
T 3tka_A          120 VAERDLIGKIDGILLDL  136 (347)
T ss_dssp             HHHTTCTTCEEEEEEEC
T ss_pred             HHhcCCCCcccEEEECC
Confidence            11   1 3699999864

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.14  E-value=0.00021  Score=64.00  Aligned_cols=55  Identities=29%  Similarity=0.414  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         131 VRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       131 ~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .+...+...+.......++.+|||+|||+|.++...+..|+ +++++|+++.....
T Consensus        40 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~   94 (293)
T 3thr_A           40 SRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKY   94 (293)
T ss_dssp             CBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             chHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence            34455555555444455789999999999999999998876 99999998655443

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=97.11  E-value=0.00039  Score=60.67  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=36.4

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccHH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRTE  187 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~~  187 (319)
                      ..++.+|||+|||+|.+++.+++.+ +.+|+|+|+++.+....
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A   55 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSA   55 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence            3478899999999999999999888 77999999998766653

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.09  E-value=0.00087  Score=60.74  Aligned_cols=41  Identities=27%  Similarity=0.343  Sum_probs=35.9

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..+++++||+|||||.++..+++.|+.+|+|+|++......
T Consensus        83 ~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~  123 (291)
T 3hp7_A           83 SVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVW  123 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCH
T ss_pred             CccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            45788999999999999999988899999999998765543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=97.08  E-value=0.00043  Score=61.14  Aligned_cols=42  Identities=24%  Similarity=0.383  Sum_probs=36.4

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccHH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRTE  187 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~~  187 (319)
                      ..++.+|||+|||+|.+++.+++.+ +.+|+|+|+++.+....
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A   61 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSA   61 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence            3478899999999999999999888 67899999998766653

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=97.07  E-value=0.00059  Score=59.73  Aligned_cols=42  Identities=26%  Similarity=0.374  Sum_probs=36.5

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccHH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRTE  187 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~~  187 (319)
                      ..++.+|+|+|||+|.+++.+++.+ +.+|+|+|+++.+....
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A   61 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSA   61 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence            3478899999999999999999888 77899999998766653

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.07  E-value=0.0009  Score=59.44  Aligned_cols=60  Identities=17%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY  248 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~  248 (319)
                      ..+.+.++.... .++..|||..||+|..+..+.+.|. +++|+|+++ .++.++++++.+++
T Consensus       199 ~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence            455555555543 5678999999999999999999865 999999999 99999999887653

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.04  E-value=0.0007  Score=60.76  Aligned_cols=51  Identities=29%  Similarity=0.408  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeec-CCCc
Q psy8709         133 TESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK-SGTP  183 (319)
Q Consensus       133 ~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~-d~~~  183 (319)
                      +.....++.......++++|||+|||+|.+++.+++.|+.+|+++|+ ++..
T Consensus        64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~  115 (281)
T 3bzb_A           64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEI  115 (281)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHH
T ss_pred             HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHH
Confidence            33445555556666789999999999999999999988889999999 6543

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.04  E-value=0.00085  Score=62.44  Aligned_cols=74  Identities=16%  Similarity=0.144  Sum_probs=57.8

Q ss_pred             HHHHHHHHhcccccCC------CcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEc
Q psy8709         186 TESYKSAILNNKSLFN------NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHK  257 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~------~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~  257 (319)
                      ...+.+.|.+.+.+.+      +..|||||.|.|.+|..+++. ..++|+++|+++ ++...++.. .   .++++++.+
T Consensus        37 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~  112 (353)
T 1i4w_A           37 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKR  112 (353)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECS
T ss_pred             CHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEEC
Confidence            3566667776666543      578999999999999999985 356999999999 877776655 2   268999999


Q ss_pred             Cccccc
Q psy8709         258 LLEDVE  263 (319)
Q Consensus       258 d~~~~~  263 (319)
                      |+..+.
T Consensus       113 D~l~~~  118 (353)
T 1i4w_A          113 DPYDWS  118 (353)
T ss_dssp             CTTCHH
T ss_pred             Cccchh
Confidence            996653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.03  E-value=0.00055  Score=61.57  Aligned_cols=37  Identities=24%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ..+.++++|||+|||+|.++..+++.  .+|+|+|+++.
T Consensus        78 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m  114 (276)
T 2wa2_A           78 GGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTL  114 (276)
T ss_dssp             TSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECC
T ss_pred             CCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchh
Confidence            44568899999999999999999877  68999999874

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=96.96  E-value=0.0013  Score=57.50  Aligned_cols=44  Identities=39%  Similarity=0.551  Sum_probs=36.6

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .+.......++++|||+|||+|.++..+++.+...++++|+++.
T Consensus        35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~   78 (253)
T 3g5l_A           35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSER   78 (253)
T ss_dssp             HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH
T ss_pred             HHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHH
Confidence            34445556689999999999999999999888879999999753

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.96  E-value=0.02  Score=48.06  Aligned_cols=106  Identities=16%  Similarity=0.180  Sum_probs=62.0

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccHH--HHHHHHhcccc--------c----CCCcceee
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRTE--SYKSAILNNKS--------L----FNNKHVID  207 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~~--~~~~~i~~~l~--------~----~~~~~VLD  207 (319)
                      .....++.+|||+|||+|.+++.+++.+ ..+++++|+++......  +....-...+.        .    ..-..|+.
T Consensus        35 ~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~  114 (204)
T 3e05_A           35 KLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFI  114 (204)
T ss_dssp             HTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEE
T ss_pred             HcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEE
Confidence            3466789999999999999999999776 78999999987655442  22211111111        0    11123332


Q ss_pred             ccCCCc--hHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHhcCC
Q psy8709         208 VGAGTG--ILSIFAAQ--AGAAKVFAIEKSD-IAYETIDIIRKNKY  248 (319)
Q Consensus       208 iGcGtG--~ls~~la~--~g~~~V~gvD~s~-~i~~a~~~~~~~g~  248 (319)
                      -++...  .+...+.+  .+.+.++..+... ..+...+.++..|+
T Consensus       115 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          115 GGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY  160 (204)
T ss_dssp             SCCTTCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             CCCCcCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence            222211  11122222  2344677776665 66677777778876

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=96.90  E-value=0.00062  Score=60.33  Aligned_cols=41  Identities=17%  Similarity=0.260  Sum_probs=35.4

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...++++|||+|||+|++++.++..|+.+|+|+|+++....
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~   92 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNRE   92 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHH
Confidence            45688999999999999999888889889999999865444

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.90  E-value=0.0017  Score=57.39  Aligned_cols=40  Identities=28%  Similarity=0.531  Sum_probs=35.1

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++++|||+|||+|.+++.+++.|+ +++++|+++.....
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~  157 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQ  157 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHH
Confidence            45789999999999999999999888 99999998766554

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.79  E-value=0.0012  Score=55.06  Aligned_cols=40  Identities=30%  Similarity=0.408  Sum_probs=34.5

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++++|||+|||+|.+++.++..++.+|+++|+++.....
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~   82 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAV   82 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHH
Confidence            5789999999999999998888888999999998654443

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=96.78  E-value=0.00092  Score=60.97  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=29.2

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeec
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEK  179 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~  179 (319)
                      ..+.++++|||+|||+|.++..+++.  ..|+++|+
T Consensus        78 ~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~  111 (305)
T 2p41_A           78 NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKG  111 (305)
T ss_dssp             TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEE
T ss_pred             CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEec
Confidence            33557899999999999999999977  58999998

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.76  E-value=0.0013  Score=54.49  Aligned_cols=41  Identities=24%  Similarity=0.335  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .+.++.+|||+|||+|.+++.+++. +.+|+++|+++.....
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~   59 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGK   59 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHH
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHH
Confidence            3568899999999999999999977 7899999998655443

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=96.72  E-value=0.0015  Score=57.72  Aligned_cols=44  Identities=27%  Similarity=0.367  Sum_probs=37.0

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      +.......++.+|||+|||+|.++..++..++.+++++|++...
T Consensus        23 iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~   66 (249)
T 3ftd_A           23 IAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREM   66 (249)
T ss_dssp             HHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHH
T ss_pred             HHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHH
Confidence            34445567889999999999999999998888999999998643

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.69  E-value=0.0016  Score=53.64  Aligned_cols=40  Identities=33%  Similarity=0.429  Sum_probs=34.3

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ..++++|||+|||+|.+++.+++.+..+++++|+++....
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~   68 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQA   68 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHH
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHH
Confidence            5678899999999999999998878889999999854433

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=96.65  E-value=0.0018  Score=58.31  Aligned_cols=41  Identities=39%  Similarity=0.388  Sum_probs=35.8

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..+|++|||+|||+|.+++.+++.|+.+|+++|+++.....
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~  163 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF  163 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHH
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence            45899999999999999999999999999999998654443

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=96.63  E-value=0.0025  Score=54.22  Aligned_cols=42  Identities=21%  Similarity=0.303  Sum_probs=35.4

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ....++.+|||+|||+|.+++.+++. +.+|+++|+++.....
T Consensus        51 l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~   92 (204)
T 3njr_A           51 LAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIEN   92 (204)
T ss_dssp             HCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHH
T ss_pred             cCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHH
Confidence            35668899999999999999999987 7789999998755443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=96.53  E-value=0.0019  Score=54.85  Aligned_cols=39  Identities=28%  Similarity=0.224  Sum_probs=33.3

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|.+++.++..++..|+++|+++.....
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~   91 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQ   91 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHH
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHH
Confidence            678999999999999998887788899999998654443

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=96.53  E-value=0.002  Score=53.08  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=31.4

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .++++|||+|||+|.+++.+++.+  +++|+|+++...
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~   57 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRAL   57 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHH
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHH
Confidence            467899999999999999999888  999999986443

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.53  E-value=0.0057  Score=52.03  Aligned_cols=50  Identities=22%  Similarity=0.377  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         132 RTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       132 r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      +...+...+.....  ++.+|||+|||+|.++..++..+. +++++|+++...
T Consensus        24 ~~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~   73 (227)
T 1ve3_A           24 RIETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMI   73 (227)
T ss_dssp             HHHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHH
Confidence            34444454544433  488999999999999999988877 899999985443

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=96.52  E-value=0.0025  Score=54.62  Aligned_cols=39  Identities=26%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTP  183 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~  183 (319)
                      .+.++.+|||+|||+|.++..++.. +..+|+|+|+++..
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~   93 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKP   93 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHH
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHH
Confidence            4568899999999999999887754 46799999998653

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=96.51  E-value=0.0027  Score=53.61  Aligned_cols=41  Identities=37%  Similarity=0.469  Sum_probs=35.1

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...++++|||+|||+|.+++.+++.|+..++++|+++....
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~   86 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVD   86 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHH
Confidence            45678999999999999999999888889999999865443

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.50  E-value=0.0039  Score=51.38  Aligned_cols=41  Identities=29%  Similarity=0.435  Sum_probs=34.8

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++++|||+|||+|.+++.+++.++.+++++|+++.....
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~   82 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKV   82 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence            46889999999999999998888888899999998654433

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=96.50  E-value=0.0039  Score=50.99  Aligned_cols=40  Identities=30%  Similarity=0.457  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...++.+|||+|||+|.++..+++ +..+++++|+++....
T Consensus        32 ~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~   71 (183)
T 2yxd_A           32 NLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIE   71 (183)
T ss_dssp             CCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHH
Confidence            456888999999999999999998 8889999999865443

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.50  E-value=0.012  Score=54.15  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=83.1

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcC-----------------
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNK-----------------  247 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g-----------------  247 (319)
                      +..+-+.+...+...+...|+.+|||.......+... +...++-||..++++.-++.+...+                 
T Consensus        82 t~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~  161 (334)
T 1rjd_A           82 TVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSP  161 (334)
T ss_dssp             HHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTT
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccc
Confidence            3333333333333244579999999999999888874 4458889998667666666666542                 


Q ss_pred             ---CCCcEEEEEcCcccccc---------CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE-eec
Q psy8709         248 ---YDSQIEVYHKLLEDVEL---------PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC-PNR  308 (319)
Q Consensus       248 ---~~~~i~~i~~d~~~~~~---------~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li-~~~  308 (319)
                         ..++.+++..|+.+...         ......+++++.+..++.. +....+++.+.... |+|.++ ++.
T Consensus       162 ~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~-~~~~~ll~~ia~~~-~~~~~v~~e~  233 (334)
T 1rjd_A          162 FLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHN-NESQLLINTIMSKF-SHGLWISYDP  233 (334)
T ss_dssp             EEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH-HHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred             cccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCH-HHHHHHHHHHHhhC-CCcEEEEEec
Confidence               13689999999987421         2246789999998887644 66788888888876 666654 544

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=96.49  E-value=0.0041  Score=54.57  Aligned_cols=46  Identities=24%  Similarity=0.322  Sum_probs=37.2

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      ..+.......++.+|||+|||+|.++..++..+ .+++++|++....
T Consensus        20 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~   65 (244)
T 1qam_A           20 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLC   65 (244)
T ss_dssp             HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHH
T ss_pred             HHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHH
Confidence            344455566788999999999999999999777 7899999986443

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=96.48  E-value=0.0024  Score=57.52  Aligned_cols=41  Identities=22%  Similarity=0.451  Sum_probs=34.5

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~  185 (319)
                      .++++++|||+|||+|.+++.++. +++.+++|+|++.....
T Consensus        43 ~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~   84 (292)
T 3g07_A           43 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIH   84 (292)
T ss_dssp             GGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHH
T ss_pred             hhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            456899999999999999999885 57889999999865443

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.47  E-value=0.0036  Score=55.77  Aligned_cols=42  Identities=24%  Similarity=0.187  Sum_probs=34.6

Q ss_pred             HhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         141 LNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       141 ~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      .....+.++.+|||+|||+|.+++.+++.|+ +|+++|+++..
T Consensus        38 l~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~m   79 (261)
T 3iv6_A           38 IFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRM   79 (261)
T ss_dssp             HHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHH
T ss_pred             HHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHH
Confidence            3345677899999999999999999998764 89999987543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.45  E-value=0.0022  Score=54.48  Aligned_cols=41  Identities=15%  Similarity=0.130  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .+.++.+|||+|||+|..+...++.|. .|+|+|+++.....
T Consensus        19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~   59 (203)
T 1pjz_A           19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVER   59 (203)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHH
T ss_pred             ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            345788999999999999999888765 89999998665544

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.41  E-value=0.0041  Score=54.76  Aligned_cols=41  Identities=12%  Similarity=0.229  Sum_probs=34.0

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      ..++.+|||+|||+|..++.++.. +..+|+++|++......
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~  119 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAF  119 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            356889999999999999998865 57899999998655443

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=96.41  E-value=0.0025  Score=54.10  Aligned_cols=39  Identities=26%  Similarity=0.208  Sum_probs=33.3

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|.+++.++..++.+|+++|+++.....
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~   92 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQ   92 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHH
Confidence            678999999999999998887788899999998654443

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.39  E-value=0.0043  Score=50.71  Aligned_cols=42  Identities=17%  Similarity=0.191  Sum_probs=34.6

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCccc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIR  185 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~  185 (319)
                      ....++.+|||+|||+|.+++.+++. +..+++++|+++....
T Consensus        21 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~   63 (178)
T 3hm2_A           21 LAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRE   63 (178)
T ss_dssp             HCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHH
T ss_pred             hcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence            35678899999999999999998855 5789999999865443

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.38  E-value=0.0044  Score=52.08  Aligned_cols=40  Identities=30%  Similarity=0.404  Sum_probs=30.9

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||+|.+++.+++.+ ..+++++|+++.....
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~   69 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAV   69 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            688999999999999999999776 6699999998765443

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.36  E-value=0.0037  Score=55.46  Aligned_cols=42  Identities=12%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .....++.+|||+|||+|.++...+..+ .+|+++|++.....
T Consensus        24 ~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~   65 (255)
T 3tqs_A           24 AIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVA   65 (255)
T ss_dssp             HHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHH
T ss_pred             hcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHH
Confidence            3456688999999999999999999876 78999999865443

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.36  E-value=0.0089  Score=56.03  Aligned_cols=72  Identities=24%  Similarity=0.077  Sum_probs=55.6

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc--------CCCceeEEE
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL--------PVESVDIII  273 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~--------~~~~fD~Ii  273 (319)
                      .+++|+.||.|.++.-+.+.|...+.++|+++ .++..+    .|-  .+..++.+|+.++..        ....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~----~N~--~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHA----INF--PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHH----HHC--TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHH----HhC--CCCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            57999999999999999999987889999999 444333    332  356788999987631        236799999


Q ss_pred             eccchhh
Q psy8709         274 SEWMGYF  280 (319)
Q Consensus       274 s~~~~~~  280 (319)
                      ..+++..
T Consensus        77 ggpPCQ~   83 (376)
T 3g7u_A           77 GGPPCQG   83 (376)
T ss_dssp             ECCCCCT
T ss_pred             ecCCCCC
Confidence            8887543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.34  E-value=0.0035  Score=52.70  Aligned_cols=41  Identities=32%  Similarity=0.421  Sum_probs=34.6

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...++++|||+|||+|.+++.++..+..+++++|+++....
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~   88 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIE   88 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHH
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHH
Confidence            34578899999999999999999888889999999864433

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.33  E-value=0.0046  Score=53.87  Aligned_cols=43  Identities=26%  Similarity=0.359  Sum_probs=35.7

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      -..+.++.+|||+|||+|.++..+++.+..+++++|+++....
T Consensus        41 l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~   83 (257)
T 3f4k_A           41 INELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIE   83 (257)
T ss_dssp             SCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHH
T ss_pred             HhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHH
Confidence            3456788899999999999999999877669999999865443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.32  E-value=0.014  Score=55.30  Aligned_cols=45  Identities=18%  Similarity=0.441  Sum_probs=36.9

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~  186 (319)
                      ....+.++.+|||+|||+|.+.+.++ ..++.+++|+|+++.....
T Consensus       167 ~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lel  212 (438)
T 3uwp_A          167 DEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKY  212 (438)
T ss_dssp             HHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            33467799999999999999999988 5677789999998755443

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=96.30  E-value=0.0026  Score=56.92  Aligned_cols=41  Identities=39%  Similarity=0.388  Sum_probs=35.4

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++++|||+|||+|.+++.+++.++.+|+++|+++.....
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~  163 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF  163 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHH
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            34689999999999999999999987799999998765544

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.30  E-value=0.0042  Score=54.35  Aligned_cols=41  Identities=10%  Similarity=0.279  Sum_probs=35.0

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCC
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGT  182 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~  182 (319)
                      .+..+.||.+|||+|||+|.++..+++ .| ..+|+|+|+++.
T Consensus        71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~  113 (233)
T 4df3_A           71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPR  113 (233)
T ss_dssp             SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHH
T ss_pred             hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHH
Confidence            356689999999999999999999884 46 789999999754

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.27  E-value=0.012  Score=50.95  Aligned_cols=44  Identities=23%  Similarity=0.399  Sum_probs=34.2

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ......++.+|||+|||+|.++...++.| ..++++|+++.....
T Consensus        35 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~   78 (252)
T 1wzn_A           35 KEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRV   78 (252)
T ss_dssp             HHTCSSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHH
T ss_pred             HHhcccCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHH
Confidence            33344577899999999999999998875 489999998654433

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.27  E-value=0.05  Score=49.55  Aligned_cols=107  Identities=8%  Similarity=0.062  Sum_probs=79.4

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcC--CCCcEEEEEcCccccc---------cCCCceeE
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNK--YDSQIEVYHKLLEDVE---------LPVESVDI  271 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g--~~~~i~~i~~d~~~~~---------~~~~~fD~  271 (319)
                      ..|+++|||--.....+......+++-+|....+...++.+...+  ...+.+++..|+.+ .         +....--+
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~  182 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSARTA  182 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCEE
Confidence            479999999877655554322358999996448888888887543  24678899999876 2         11234567


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ++++.+.+++.. +....+++.+...+.||+.++++..+.
T Consensus       183 ~i~Egvl~Yl~~-~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          183 WLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             EEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             EEEechHhhCCH-HHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence            778888888765 577889999999999999999998764

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=96.26  E-value=0.0036  Score=50.72  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=32.4

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ++++|||+|||+|.++..+++.++. ++++|+++.....
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~   78 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRL   78 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHH
Confidence            6789999999999999999988876 9999998654433

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.25  E-value=0.0074  Score=50.21  Aligned_cols=37  Identities=30%  Similarity=0.318  Sum_probs=32.0

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhc-CC---------ceEEeeecCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQA-GA---------AKVFAIEKSGT  182 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~-ga---------~~V~avd~d~~  182 (319)
                      +.++.+|||+|||+|.++..+++. ++         .+++++|+++.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            567899999999999999998865 65         79999999874

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.24  E-value=0.0045  Score=52.17  Aligned_cols=39  Identities=38%  Similarity=0.550  Sum_probs=33.8

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .++++|||+|||+|.++..+++.+..+++++|+++....
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~   97 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMT   97 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            478899999999999999999888889999999865433

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.23  E-value=0.0062  Score=50.05  Aligned_cols=41  Identities=29%  Similarity=0.402  Sum_probs=34.6

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ....++.+|||+|||+|.++..+++.+ .+++++|.++....
T Consensus        29 ~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~   69 (192)
T 1l3i_A           29 AEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAIS   69 (192)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHH
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHH
Confidence            356788999999999999999999877 89999999764443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=96.23  E-value=0.0061  Score=55.23  Aligned_cols=48  Identities=27%  Similarity=0.387  Sum_probs=38.6

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..+.......++.+|||+|||+|.++..++.. +.+|+++|++......
T Consensus        40 ~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~   87 (295)
T 3gru_A           40 NKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPY   87 (295)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHH
T ss_pred             HHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHH
Confidence            33444456778999999999999999999877 5799999999765544

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=96.22  E-value=0.0072  Score=50.93  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=32.1

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      +.++.+|||+|||+|.++..+++. ...|+|+|+++.
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~   58 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEM   58 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccc
Confidence            457899999999999999999977 779999999864

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=96.21  E-value=0.0044  Score=55.47  Aligned_cols=41  Identities=37%  Similarity=0.407  Sum_probs=34.1

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ....++ +|||+|||+|.++...+..+ .+|+++|++......
T Consensus        43 ~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~   83 (271)
T 3fut_A           43 ARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPV   83 (271)
T ss_dssp             HCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHH
T ss_pred             cCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHH
Confidence            356678 99999999999999999877 689999998765443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.20  E-value=0.0066  Score=52.37  Aligned_cols=40  Identities=20%  Similarity=0.278  Sum_probs=33.5

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCC
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGT  182 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~  182 (319)
                      ...+.++.+|||+|||+|.++..+++. |..+|+++|+++.
T Consensus        69 ~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~  109 (230)
T 1fbn_A           69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPR  109 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHH
T ss_pred             ccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHH
Confidence            344568899999999999999988865 6789999999854

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=96.18  E-value=0.005  Score=54.19  Aligned_cols=42  Identities=21%  Similarity=0.352  Sum_probs=35.4

Q ss_pred             CCC-CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         145 SLF-NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~-~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ... ++.+|||+|||+|.+++.+++.+...++++|+++.....
T Consensus        45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~   87 (259)
T 3lpm_A           45 YLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADM   87 (259)
T ss_dssp             CCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHH
T ss_pred             cCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHH
Confidence            344 789999999999999999998887799999998655444

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=96.17  E-value=0.0037  Score=54.31  Aligned_cols=39  Identities=23%  Similarity=0.264  Sum_probs=32.0

Q ss_pred             CCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCccc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIR  185 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~  185 (319)
                      .++.+|||+|||+|.+++..+.. ...+|+++|+++....
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~  108 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRIT  108 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence            46789999999999999998854 4678999999864433

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=96.15  E-value=0.0069  Score=53.27  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=35.3

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .+.++.+|||+|||+|.++..+++.+..+++++|+++....
T Consensus        43 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~   83 (267)
T 3kkz_A           43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFID   83 (267)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHH
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHH
Confidence            46789999999999999999999888889999999865443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.14  E-value=0.0084  Score=52.13  Aligned_cols=46  Identities=15%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             HhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         141 LNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       141 ~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .....+.++.+|||+|||+|.++...+.....+++++|+++.....
T Consensus        29 ~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~   74 (256)
T 1nkv_A           29 GRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQ   74 (256)
T ss_dssp             HHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence            3344577899999999999999998886545689999997654433

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=96.13  E-value=0.0098  Score=50.31  Aligned_cols=46  Identities=11%  Similarity=0.038  Sum_probs=35.9

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         136 YKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       136 ~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      +...+.......++.+|||+|||+|.++...+..+ .+++++|+++.
T Consensus        39 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~   84 (216)
T 3ofk_A           39 HTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPR   84 (216)
T ss_dssp             HHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHH
T ss_pred             HHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHH
Confidence            33444444556688999999999999999998776 58999999754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.13  E-value=0.0087  Score=52.62  Aligned_cols=49  Identities=22%  Similarity=0.308  Sum_probs=38.3

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...+.....+.++.+|||+|||+|.++..+++....+++++|+++....
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~   98 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVN   98 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            3444455567789999999999999999988655689999999865443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=96.13  E-value=0.0059  Score=57.35  Aligned_cols=41  Identities=20%  Similarity=0.172  Sum_probs=36.3

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTE  187 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~  187 (319)
                      .++++|||+|||+|.+++.+++.|+.+|+++|+++......
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A  251 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALS  251 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHH
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            57889999999999999999998999999999997765553

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=96.11  E-value=0.0077  Score=57.52  Aligned_cols=47  Identities=23%  Similarity=0.312  Sum_probs=37.9

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~  186 (319)
                      +.....+.++.+|||+|||+|.+++.+++ .++.+++|+|++......
T Consensus       234 ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~  281 (433)
T 1u2z_A          234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDL  281 (433)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            33445677899999999999999999986 577899999998765443

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=96.10  E-value=0.0024  Score=63.12  Aligned_cols=79  Identities=18%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHH-HcCCCE
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAA-QAGAAK  226 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la-~~g~~~  226 (319)
                      .+-+|||+|||.|+++...|+.|+ .|+|+|..+..+........-       .+..=++.=||+-.-..... ...+.-
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~-------~~~~~~~~~~~~~~~~~~~~~~~~fD~  137 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEE-------NPDFAAEFRVGRIEEVIAALEEGEFDL  137 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHT-------STTSEEEEEECCHHHHHHHCCTTSCSE
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHh-------cCCCceEEEECCHHHHhhhccCCCccE
Confidence            456899999999999999999987 599999986554443322211       11112355555542211111 123567


Q ss_pred             EEEEecHH
Q psy8709         227 VFAIEKSD  234 (319)
Q Consensus       227 V~gvD~s~  234 (319)
                      |++.+.-+
T Consensus       138 v~~~e~~e  145 (569)
T 4azs_A          138 AIGLSVFH  145 (569)
T ss_dssp             EEEESCHH
T ss_pred             EEECcchh
Confidence            88887665

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=96.10  E-value=0.0054  Score=52.13  Aligned_cols=37  Identities=24%  Similarity=0.348  Sum_probs=31.6

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTP  183 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~  183 (319)
                      .++++|||+|||+|.++..+++.+ ...++++|+++..
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~   65 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRS   65 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHH
Confidence            467899999999999999998765 5799999998543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.09  E-value=0.0046  Score=54.12  Aligned_cols=41  Identities=24%  Similarity=0.322  Sum_probs=34.8

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ....++.+|||+|||+|.++..++..+ .+++++|++.....
T Consensus        25 ~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~   65 (245)
T 1yub_A           25 LNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFN   65 (245)
T ss_dssp             CCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSS
T ss_pred             cCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHH
Confidence            456688999999999999999999776 78999999875543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.08  E-value=0.0058  Score=53.96  Aligned_cols=39  Identities=26%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||+|..+...++.|. .|+|+|+++.....
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~  105 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIRE  105 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence            4788999999999999999998876 89999998665443

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=96.08  E-value=0.0087  Score=50.05  Aligned_cols=37  Identities=24%  Similarity=0.322  Sum_probs=31.6

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhc-C--CceEEeeecCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQA-G--AAKVFAIEKSGT  182 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~-g--a~~V~avd~d~~  182 (319)
                      +.++.+|||+|||+|.++..+++. +  ..+++|+|+++.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~   59 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM   59 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence            457889999999999999998854 4  589999999874

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.08  E-value=0.0069  Score=50.92  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=33.0

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .++.+|||+|||+|.++..+++.+...++++|+++...
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~   78 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVV   78 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHH
Confidence            57889999999999999999988877999999975443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=96.04  E-value=0.005  Score=52.40  Aligned_cols=40  Identities=23%  Similarity=0.320  Sum_probs=33.9

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCccc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~  185 (319)
                      ..++.+|||+|||+|.++..+++.. ..+++++|+++....
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~   65 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRME   65 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGH
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            4578899999999999999988665 789999999875444

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=96.04  E-value=0.0053  Score=52.17  Aligned_cols=39  Identities=15%  Similarity=0.220  Sum_probs=31.5

Q ss_pred             CCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCccc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIR  185 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~  185 (319)
                      .+..+|||+|||+|.+++..+.. ...+++|+|++.....
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~le   87 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIA   87 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHH
Confidence            46889999999999999999866 2349999999854433

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.02  E-value=0.011  Score=52.94  Aligned_cols=46  Identities=20%  Similarity=0.240  Sum_probs=36.8

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcc
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPI  184 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~  184 (319)
                      ..+.....+.++.+|||+|||+|.++..+++. | .+++++|+++...
T Consensus        62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~  108 (302)
T 3hem_A           62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQY  108 (302)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHH
T ss_pred             HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHH
Confidence            33445556778999999999999999999866 6 7899999975443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=96.02  E-value=0.005  Score=55.35  Aligned_cols=43  Identities=19%  Similarity=0.189  Sum_probs=34.7

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCc---eEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAA---KVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~---~V~avd~d~~~~~~  186 (319)
                      ....++.+|||+|||+|.++...+..+..   +|+++|++......
T Consensus        38 ~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~   83 (279)
T 3uzu_A           38 IRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGR   83 (279)
T ss_dssp             HCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHH
T ss_pred             cCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHH
Confidence            35668899999999999999999877644   49999998655444

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.01  E-value=0.0054  Score=55.46  Aligned_cols=62  Identities=19%  Similarity=0.166  Sum_probs=45.6

Q ss_pred             CcEEEEEcCcccc--ccCCCceeEEEeccchhhhc-----------------chhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         250 SQIEVYHKLLEDV--ELPVESVDIIISEWMGYFLL-----------------FETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       250 ~~i~~i~~d~~~~--~~~~~~fD~Iis~~~~~~l~-----------------~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .+++++++|..+.  .++.++||+|++++++....                 ....+..++.++.++|||||.+++....
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d   99 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD   99 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence            4678999999874  25568999999999875221                 0112456788999999999999987664


Q ss_pred             c
Q psy8709         311 L  311 (319)
Q Consensus       311 ~  311 (319)
                      .
T Consensus       100 ~  100 (297)
T 2zig_A          100 V  100 (297)
T ss_dssp             E
T ss_pred             C
Confidence            3

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=96.00  E-value=0.015  Score=46.80  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCC
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSG  181 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~  181 (319)
                      ...++.+|||+|||+|.++..+++. | ..+++++|+++
T Consensus        19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~   57 (180)
T 1ej0_A           19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc
Confidence            3567889999999999999998865 6 48999999986

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.00  E-value=0.0032  Score=58.31  Aligned_cols=72  Identities=18%  Similarity=0.102  Sum_probs=53.0

Q ss_pred             cceeeccCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc---CCCceeEEEecc
Q psy8709         203 KHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL---PVESVDIIISEW  276 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~---~~~~fD~Iis~~  276 (319)
                      .+|+|+.||.|.++..+.+.|  +..|.++|+++ .++..+.+.      ....++.+|+.++..   +...+|+|+.++
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~------~~~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc------cccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            589999999999999999988  55899999999 555554443      234577899987642   212699999988


Q ss_pred             chhh
Q psy8709         277 MGYF  280 (319)
Q Consensus       277 ~~~~  280 (319)
                      +...
T Consensus        77 PCq~   80 (343)
T 1g55_A           77 PCQP   80 (343)
T ss_dssp             C---
T ss_pred             CCcc
Confidence            7543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=95.99  E-value=0.012  Score=50.88  Aligned_cols=43  Identities=16%  Similarity=0.123  Sum_probs=34.8

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      +.......++.+|||+|||+|.++...+..+...++++|+++.
T Consensus        85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~  127 (254)
T 1xtp_A           85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH  127 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH
T ss_pred             HHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHH
Confidence            3344455678999999999999999988777778999998743

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=95.97  E-value=0.0078  Score=50.96  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=29.9

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .++.+|||+|||+|.++...+..+. +++++|+++.
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~   85 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRT   85 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHH
Confidence            4668999999999999999987754 7999999743

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.97  E-value=0.0045  Score=53.90  Aligned_cols=36  Identities=22%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .+|.+|||+|||+|..+...++.+..+++++|+++.
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~   94 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDG   94 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHH
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHH
Confidence            578999999999999999998888788999999853

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=95.95  E-value=0.012  Score=49.63  Aligned_cols=41  Identities=20%  Similarity=0.320  Sum_probs=34.2

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      ......++.+|||+|||+|.++...++. ..+++++|+++..
T Consensus        71 ~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~  111 (210)
T 3lbf_A           71 ELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGL  111 (210)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHH
T ss_pred             HhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHH
Confidence            3345678999999999999999999877 6799999998543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.95  E-value=0.01  Score=50.94  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=32.9

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      ....++++|||+|||+|.++..+++.+..+++++|+++
T Consensus        39 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~   76 (243)
T 3bkw_A           39 LPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSE   76 (243)
T ss_dssp             SCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH
T ss_pred             ccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCH
Confidence            44568899999999999999999888777999999874

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.95  E-value=0.0055  Score=52.99  Aligned_cols=37  Identities=22%  Similarity=0.236  Sum_probs=32.4

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      .++.+|||+|||+|.++...+..+..+++++|+++..
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~   95 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGV   95 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHH
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHH
Confidence            4788999999999999999988887799999998543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=95.94  E-value=0.0065  Score=50.73  Aligned_cols=41  Identities=22%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhc--CCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~--ga~~V~avd~d~~~~~~  186 (319)
                      ..++.+|||+|||+|.++..+++.  +..+++++|+++.....
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~   62 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIAN   62 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            457889999999999999998855  35699999998654443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.94  E-value=0.012  Score=50.49  Aligned_cols=40  Identities=23%  Similarity=0.444  Sum_probs=33.8

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ......++.+|||+|||+|.++...+..+ .+++++|+++.
T Consensus        64 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~  103 (231)
T 1vbf_A           64 DELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEK  103 (231)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHH
T ss_pred             HhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHH
Confidence            33456788999999999999999999877 79999999754

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=95.93  E-value=0.007  Score=51.44  Aligned_cols=38  Identities=26%  Similarity=0.386  Sum_probs=32.1

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~  184 (319)
                      .++++|||+|||+|.++..++..+ ..+++++|+++...
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~   66 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVL   66 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHH
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHH
Confidence            467899999999999999998766 47999999985443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.93  E-value=0.013  Score=48.12  Aligned_cols=42  Identities=17%  Similarity=0.327  Sum_probs=34.4

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ....++.+|||+|||+|.++..+++. ...++++|+++.....
T Consensus        48 ~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~   89 (194)
T 1dus_A           48 VVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKL   89 (194)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHH
T ss_pred             cccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHH
Confidence            34558899999999999999999877 7799999998654433

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=95.92  E-value=0.012  Score=52.13  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=32.1

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhc-C--CceEEeeecCCCccc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQA-G--AAKVFAIEKSGTPIR  185 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~-g--a~~V~avd~d~~~~~  185 (319)
                      +.++.+|||+|||+|.+++.+++. +  ..+++|+|+++....
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~  110 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIE  110 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHH
Confidence            568999999999999999988854 2  458999999865433

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=95.89  E-value=0.015  Score=51.66  Aligned_cols=47  Identities=21%  Similarity=0.225  Sum_probs=36.7

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcc
Q psy8709         137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~  184 (319)
                      ...+.....+.++.+|||+|||+|.++..++ ..|. +++++|+++...
T Consensus        53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~  100 (287)
T 1kpg_A           53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQA  100 (287)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHH
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHH
Confidence            3445555667789999999999999999888 5555 999999875433

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=95.88  E-value=0.015  Score=49.88  Aligned_cols=38  Identities=32%  Similarity=0.440  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCC
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGT  182 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~  182 (319)
                      ...++.+|||+|||+|.++...+... ..+++++|+++.
T Consensus        41 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~   79 (234)
T 3dtn_A           41 VDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEK   79 (234)
T ss_dssp             CSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             cCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHH
Confidence            35678999999999999999988664 789999999753

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=95.87  E-value=0.0072  Score=52.31  Aligned_cols=38  Identities=18%  Similarity=0.143  Sum_probs=31.5

Q ss_pred             CCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~  184 (319)
                      .++.+|||+|||+|.++..+++ .....|+|+|+++...
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~m   61 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENL   61 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGG
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence            4788999999999999998885 4577899999985443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=95.87  E-value=0.0067  Score=52.41  Aligned_cols=37  Identities=32%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .++.+|||+|||+|.+++.+++.+ .+|+++|+++...
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~  113 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKI  113 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHH
T ss_pred             cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHH
Confidence            378999999999999999999887 8999999985433

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=95.86  E-value=0.011  Score=52.03  Aligned_cols=38  Identities=18%  Similarity=0.312  Sum_probs=32.7

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||+|.+++...  ++..+++.|++......
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~  141 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDV  141 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHH
Confidence            568899999999999999887  99999999998654443

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=95.86  E-value=0.0088  Score=51.75  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ...++.+|||+|||+|.++...++.+. +++++|+++.
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~   89 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKS   89 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHH
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHH
Confidence            356889999999999999999998877 8999999753

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.85  E-value=0.0083  Score=51.39  Aligned_cols=41  Identities=22%  Similarity=0.303  Sum_probs=34.7

Q ss_pred             CCCCCeEEEecCC-CChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAG-TGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~G-sG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++.+|||+||| +|.+++.+++....+++++|+++.....
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~   94 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEY   94 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHH
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence            4588999999999 9999999987757899999998655444

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=95.83  E-value=0.0072  Score=52.69  Aligned_cols=39  Identities=15%  Similarity=0.347  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      ...++++|||+|||+|.+++..+..+...++++|+++..
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~   91 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQN   91 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHH
Confidence            456889999999999999999888887899999997543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=95.82  E-value=0.0077  Score=52.53  Aligned_cols=40  Identities=20%  Similarity=0.206  Sum_probs=33.5

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCccc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~  185 (319)
                      ..++.+|||+|||+|.+++.++..+ ...++|+|++.....
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~   87 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTN   87 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHH
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHH
Confidence            4577899999999999999999877 458999999865443

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=95.81  E-value=0.013  Score=52.70  Aligned_cols=44  Identities=27%  Similarity=0.408  Sum_probs=35.1

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      +.......++.+|||+|||+|.++...+..+ .+++++|+++...
T Consensus        20 i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~   63 (285)
T 1zq9_A           20 IIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLV   63 (285)
T ss_dssp             HHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHH
Confidence            3334456788999999999999999998775 4899999985443

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.80  E-value=0.014  Score=53.71  Aligned_cols=72  Identities=17%  Similarity=0.108  Sum_probs=53.8

Q ss_pred             CcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccchh
Q psy8709         202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMGY  279 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~  279 (319)
                      +.+++|+.||.|.++..+.+.|+..+.++|+++ .++..+.+...     ..   .+|+.++... ...+|+|+..+++.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~-----~~---~~Di~~~~~~~~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE-----KP---EGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC-----CC---BSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC-----CC---cCCHHHcCHhhCCCCCEEEECCCCC
Confidence            368999999999999999999998899999999 65555555421     11   6888776421 23699999987765


Q ss_pred             hh
Q psy8709         280 FL  281 (319)
Q Consensus       280 ~l  281 (319)
                      .+
T Consensus        83 ~f   84 (327)
T 2c7p_A           83 AF   84 (327)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=95.80  E-value=0.01  Score=55.59  Aligned_cols=48  Identities=17%  Similarity=0.341  Sum_probs=38.3

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      .+.......++.+|||+|||+|.+++.+++.+ ..+|+++|++......
T Consensus       213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~  261 (375)
T 4dcm_A          213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVAS  261 (375)
T ss_dssp             HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred             HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHH
Confidence            34445555677899999999999999999776 7899999998655444

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=95.79  E-value=0.011  Score=52.15  Aligned_cols=51  Identities=16%  Similarity=0.328  Sum_probs=40.1

Q ss_pred             HHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCccc
Q psy8709         135 SYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       135 ~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~  185 (319)
                      .+...+.....+.++.+|||+|||+|.++..+++.+ ..+++++|+++....
T Consensus        24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~   75 (276)
T 3mgg_A           24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLE   75 (276)
T ss_dssp             HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHH
T ss_pred             HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence            344555566667789999999999999999988765 689999999865443

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=95.73  E-value=0.0079  Score=56.74  Aligned_cols=38  Identities=26%  Similarity=0.333  Sum_probs=33.6

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ++++|||+|||+|.+++.++..|+. |+++|+++.....
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~  251 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGV  251 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHH
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHH
Confidence            5999999999999999999998888 9999998765444

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=95.72  E-value=0.011  Score=53.66  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=30.8

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|......+..+...|+|+|++......
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~   86 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIAR   86 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHH
Confidence            578999999999976554455566789999999776655

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=95.71  E-value=0.017  Score=50.72  Aligned_cols=40  Identities=23%  Similarity=0.405  Sum_probs=33.8

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhc-CC-ceEEeeecCCC
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQA-GA-AKVFAIEKSGT  182 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~-ga-~~V~avd~d~~  182 (319)
                      ...+.++++|||+|||+|.++..++.. |+ .+++++|+++.
T Consensus        38 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~   79 (275)
T 3bkx_A           38 AWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASP   79 (275)
T ss_dssp             HHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCT
T ss_pred             HcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCcc
Confidence            345678999999999999999998865 54 79999999875

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=95.70  E-value=0.014  Score=51.32  Aligned_cols=39  Identities=38%  Similarity=0.428  Sum_probs=32.5

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      ......++.+|||+|||+|.++...+..+ .+++++|+++
T Consensus        28 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~   66 (261)
T 3ege_A           28 NLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSI   66 (261)
T ss_dssp             HHHCCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCH
T ss_pred             HHhCCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCH
Confidence            33345688999999999999999998854 6899999975

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.68  E-value=0.02  Score=54.14  Aligned_cols=63  Identities=19%  Similarity=0.184  Sum_probs=49.8

Q ss_pred             ccCCCcceeeccCCCchHHHHHH-Hc-C-CCEEEEEecHH-HHHHHHHHHHh--cCCC-CcEEEEEcCcc
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAA-QA-G-AAKVFAIEKSD-IAYETIDIIRK--NKYD-SQIEVYHKLLE  260 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la-~~-g-~~~V~gvD~s~-~i~~a~~~~~~--~g~~-~~i~~i~~d~~  260 (319)
                      ...++..++|+||+.|..+..++ +. + .++|+++|+++ ..+..++++..  |+.. ++++++..-+.
T Consensus       223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            35677899999999999999887 43 3 36999999999 99999999887  4333 67887765443

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=95.65  E-value=0.015  Score=50.64  Aligned_cols=44  Identities=25%  Similarity=0.399  Sum_probs=35.2

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .+.......++.+|||+|||+|.++..++.....+++++|+++.
T Consensus        46 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~   89 (266)
T 3ujc_A           46 KILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSN   89 (266)
T ss_dssp             HHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHH
Confidence            34445567789999999999999999988654578999999753

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=95.65  E-value=0.015  Score=49.18  Aligned_cols=43  Identities=21%  Similarity=0.248  Sum_probs=34.4

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhcCC--ceEEeeecCCCccc
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQAGA--AKVFAIEKSGTPIR  185 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~ga--~~V~avd~d~~~~~  185 (319)
                      .....++.+|||+|||+|.++..+++.+.  .+++++|.++....
T Consensus        72 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~  116 (215)
T 2yxe_A           72 LLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAE  116 (215)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHH
T ss_pred             hhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence            34567889999999999999999886653  79999998764433

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=95.65  E-value=0.012  Score=52.46  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=32.2

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ..+.++++|||+|||+|.++..+++.  .+|+|+|+++.
T Consensus        70 ~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m  106 (265)
T 2oxt_A           70 GYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTL  106 (265)
T ss_dssp             TSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECC
T ss_pred             CCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchh
Confidence            44568899999999999999998877  78999999874

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=95.65  E-value=0.011  Score=52.29  Aligned_cols=36  Identities=14%  Similarity=0.195  Sum_probs=29.3

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCce--EEeeecCCC
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAK--VFAIEKSGT  182 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~--V~avd~d~~  182 (319)
                      ....++.+|||+|||+|.++. +++ + .+  |+++|+++.
T Consensus        17 ~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~   54 (252)
T 1qyr_A           17 INPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRD   54 (252)
T ss_dssp             HCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHH
T ss_pred             cCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHH
Confidence            345688899999999999999 665 3 45  999999854

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=95.62  E-value=0.013  Score=51.23  Aligned_cols=40  Identities=20%  Similarity=0.289  Sum_probs=33.7

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTP  183 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~  183 (319)
                      ..+.++.+|||+|||+|..+..++. .+ ...|+|+|+++..
T Consensus        72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~  113 (232)
T 3id6_C           72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRV  113 (232)
T ss_dssp             CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHH
T ss_pred             cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHH
Confidence            4578999999999999999988874 45 7799999997653

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=95.61  E-value=0.0041  Score=52.34  Aligned_cols=38  Identities=26%  Similarity=0.440  Sum_probs=31.7

Q ss_pred             CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCccc
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIR  185 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~  185 (319)
                      ++.+|||+|||+|.+++..+.. +..+++++|+++....
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~  103 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVR  103 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            6789999999999999998864 5789999999864433

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.59  E-value=0.0095  Score=51.23  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=30.1

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .++.+|||+|||+|.++...+..+. +++++|+++.
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~   86 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEV   86 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHH
Confidence            3788999999999999999988754 8999998743

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.58  E-value=0.014  Score=54.09  Aligned_cols=98  Identities=16%  Similarity=0.201  Sum_probs=63.0

Q ss_pred             HhcccccCCCcceeeccCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----cc
Q psy8709         193 ILNNKSLFNNKHVIDVGAGT-GILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----EL  264 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGt-G~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~~  264 (319)
                      +.......++.+||-+|+|. |.++..+++ .|+.+|+++|.++ .++.++    ..|. +  .++..+-.++     ..
T Consensus       182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa-~--~vi~~~~~~~~~~~~~~  254 (371)
T 1f8f_A          182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK----QLGA-T--HVINSKTQDPVAAIKEI  254 (371)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----HHTC-S--EEEETTTSCHHHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCC-C--EEecCCccCHHHHHHHh
Confidence            33556778889999999875 777777777 4776899999988 555543    3343 2  2232221111     11


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ..+.+|+|+-....         ...+....+.|+|+|+++.
T Consensus       255 ~~gg~D~vid~~g~---------~~~~~~~~~~l~~~G~iv~  287 (371)
T 1f8f_A          255 TDGGVNFALESTGS---------PEILKQGVDALGILGKIAV  287 (371)
T ss_dssp             TTSCEEEEEECSCC---------HHHHHHHHHTEEEEEEEEE
T ss_pred             cCCCCcEEEECCCC---------HHHHHHHHHHHhcCCEEEE
Confidence            22379999854321         2345677789999999884

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=95.57  E-value=0.013  Score=50.43  Aligned_cols=40  Identities=23%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCC
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGT  182 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~  182 (319)
                      ...+.++.+|||+|||+|.++..+++. | ..+++++|+++.
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~  113 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR  113 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHH
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHH
Confidence            345668899999999999999998855 4 579999998754

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=95.56  E-value=0.019  Score=48.36  Aligned_cols=37  Identities=19%  Similarity=0.247  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ...++.+|||+|||+|.++..++..+ .+++++|+++.
T Consensus        43 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~   79 (218)
T 3ou2_A           43 AGNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAE   79 (218)
T ss_dssp             TTTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHH
T ss_pred             cCCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHH
Confidence            35677899999999999999988775 48999999753

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.52  E-value=0.017  Score=47.81  Aligned_cols=40  Identities=28%  Similarity=0.433  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...++.+|||+|||+|.++...+..+ .+++++|+++....
T Consensus        29 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~   68 (199)
T 2xvm_A           29 KVVKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIA   68 (199)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHH
T ss_pred             hccCCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHH
Confidence            34578899999999999999988775 48999999865433

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=95.52  E-value=0.012  Score=50.47  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=30.8

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ..++.+|||+|||+|.++...+..+. .++++|+++.
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~   75 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEE   75 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHH
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHH
Confidence            35788999999999999999988775 7999998754

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=95.52  E-value=0.014  Score=52.80  Aligned_cols=42  Identities=26%  Similarity=0.396  Sum_probs=34.3

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ....++.+|||+|||+|.++..++.. +.+|+++|+++.....
T Consensus        38 ~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~   79 (299)
T 2h1r_A           38 AKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISE   79 (299)
T ss_dssp             HCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHH
T ss_pred             cCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHH
Confidence            34568899999999999999999876 4689999998654433

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=95.52  E-value=0.01  Score=54.75  Aligned_cols=29  Identities=62%  Similarity=1.016  Sum_probs=27.2

Q ss_pred             EEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         153 IDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      ||+|||+|.+++.+++.|+.+|+++|+++
T Consensus        69 LDiGcGtG~ls~~la~~g~~~v~gvD~s~   97 (340)
T 2fyt_A           69 LDVGCGTGILSMFAAKAGAKKVLGVDQSE   97 (340)
T ss_dssp             EEETCTTSHHHHHHHHTTCSEEEEEESST
T ss_pred             EEeeccCcHHHHHHHHcCCCEEEEEChHH
Confidence            79999999999999998988999999985

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=95.50  E-value=0.01  Score=54.41  Aligned_cols=30  Identities=57%  Similarity=0.926  Sum_probs=28.3

Q ss_pred             EEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         152 VIDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       152 vLD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      |||+|||+|.+++.+++.|+.+|+++|.++
T Consensus        42 VLDiGcGtG~ls~~la~~g~~~v~~vD~s~   71 (328)
T 1g6q_1           42 VLDVGCGTGILSMFAAKHGAKHVIGVDMSS   71 (328)
T ss_dssp             EEEETCTTSHHHHHHHHTCCSEEEEEESST
T ss_pred             EEEecCccHHHHHHHHHCCCCEEEEEChHH
Confidence            899999999999999998989999999983

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=95.49  E-value=0.025  Score=51.02  Aligned_cols=47  Identities=19%  Similarity=0.196  Sum_probs=36.7

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcc
Q psy8709         137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPI  184 (319)
Q Consensus       137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~  184 (319)
                      ...+.......++.+|||+|||+|.++..+++. |. +++++|+++...
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~  126 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQH  126 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHH
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHH
Confidence            344555566778999999999999999988865 54 899999975443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=95.47  E-value=0.013  Score=49.93  Aligned_cols=39  Identities=28%  Similarity=0.262  Sum_probs=32.1

Q ss_pred             CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|.+++..++. ....++|+|++......
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~   77 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVT   77 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHH
Confidence            5679999999999999998865 47899999998655443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=95.46  E-value=0.011  Score=52.61  Aligned_cols=41  Identities=34%  Similarity=0.353  Sum_probs=34.6

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      +.++++|||+|||+|.+++.+++. ++.+|+++|+++.....
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~  158 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHY  158 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHH
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            568899999999999999999976 57899999998655443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=95.46  E-value=0.014  Score=49.52  Aligned_cols=39  Identities=18%  Similarity=0.277  Sum_probs=32.4

Q ss_pred             CCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|.+++.+++.. ...++|+|+++.....
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~   80 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSY   80 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHH
Confidence            57899999999999999988654 6799999998655443

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=95.46  E-value=0.012  Score=54.13  Aligned_cols=39  Identities=31%  Similarity=0.301  Sum_probs=33.3

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++++|||+|||+|.+++.+++.|+ +|+++|+++.....
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~  190 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGW  190 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence            3678999999999999999999888 99999998655443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.46  E-value=0.014  Score=50.15  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=31.4

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .++.+|||+|||+|.++..+++.+ .+++++|+++...
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~   83 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELL   83 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHH
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHH
Confidence            478899999999999999999875 5899999975433

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=95.45  E-value=0.016  Score=51.18  Aligned_cols=40  Identities=25%  Similarity=0.207  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPI  184 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~  184 (319)
                      ...++.+|||+|||+|.+++.+++.. ...++++|+++...
T Consensus        33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~   73 (260)
T 2ozv_A           33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMA   73 (260)
T ss_dssp             CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHH
T ss_pred             cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHH
Confidence            45578899999999999999998665 68999999986443

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.44  E-value=0.018  Score=51.11  Aligned_cols=103  Identities=9%  Similarity=0.077  Sum_probs=70.5

Q ss_pred             cceeeccCCCchHHHHHHHc--------CCCEEEEEecHH-HH------------------------HHHHHHHH-----
Q psy8709         203 KHVIDVGAGTGILSIFAAQA--------GAAKVFAIEKSD-IA------------------------YETIDIIR-----  244 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~--------g~~~V~gvD~s~-~i------------------------~~a~~~~~-----  244 (319)
                      ..|+|+|+-.|..+..++..        ...+|+++|.-+ +-                        +...+.++     
T Consensus        71 G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~  150 (257)
T 3tos_A           71 GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECS  150 (257)
T ss_dssp             SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTT
T ss_pred             CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhh
Confidence            68999999999888776542        247999999222 11                        11122211     


Q ss_pred             -hcCC-CCcEEEEEcCccccc------cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         245 -KNKY-DSQIEVYHKLLEDVE------LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       245 -~~g~-~~~i~~i~~d~~~~~------~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                       ..+. .++++++.|++.+.-      .+.++||+++.+.-.|     ......+..+...|+|||+++++...
T Consensus       151 ~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y-----~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          151 DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY-----EPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH-----HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc-----chHHHHHHHHHHHhCCCcEEEEcCCC
Confidence             2343 478999999997642      2445799999876321     33456788889999999999999864

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=95.44  E-value=0.015  Score=51.57  Aligned_cols=40  Identities=20%  Similarity=0.341  Sum_probs=34.0

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      +.++.+|||+|||+|.++...++.+...++++|+++....
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~  101 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIN  101 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHH
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            4578899999999999999888888789999999865443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=95.44  E-value=0.012  Score=55.43  Aligned_cols=40  Identities=23%  Similarity=0.344  Sum_probs=34.9

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++++|||+|||+|.+++.++..|+.+|+++|+++.....
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~  258 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDI  258 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            4789999999999999999999888999999998654443

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.43  E-value=0.029  Score=52.76  Aligned_cols=46  Identities=17%  Similarity=0.303  Sum_probs=36.4

Q ss_pred             HHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         135 SYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       135 ~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      .+...+.......++.+|||+|||+|.+....+..|. .++++|.+.
T Consensus        94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~  139 (416)
T 4e2x_A           94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSS  139 (416)
T ss_dssp             HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCH
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCH
Confidence            3444455555566889999999999999999888765 899999974

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=95.42  E-value=0.01  Score=59.34  Aligned_cols=66  Identities=26%  Similarity=0.342  Sum_probs=50.4

Q ss_pred             hhhhhhchhHHHHHHHHHHHh--------cCCCCCCCeEEEecCCCChhhHHHHhcCCc-----eEEeeecCCCcccHH
Q psy8709         122 IHAEMIKDTVRTESYKSAILN--------NNSLFNNKHVIDVGAGTGILSIFAAQAGAA-----KVFAIEKSGTPIRTE  187 (319)
Q Consensus       122 ~~~~m~~d~~r~~~~~~~i~~--------n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~-----~V~avd~d~~~~~~~  187 (319)
                      .++..-+|.+|+..|.++|..        +...+.++.|+|+|||+|.|..++.+.+++     +|||+|.++....+.
T Consensus       323 tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~  401 (637)
T 4gqb_A          323 TYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTL  401 (637)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHH
T ss_pred             hhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH
Confidence            456667899999999999974        445667789999999999996555554433     789999987555443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=95.42  E-value=0.02  Score=48.90  Aligned_cols=39  Identities=26%  Similarity=0.370  Sum_probs=32.3

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCC
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGT  182 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~  182 (319)
                      ..+.++.+|||+|||+|.++..+++. | ..+++++|+++.
T Consensus        69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~  109 (227)
T 1g8a_A           69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPR  109 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHH
T ss_pred             cCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHH
Confidence            34668899999999999999998854 5 479999998753

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=95.41  E-value=0.019  Score=48.17  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=30.9

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      ..++ +|||+|||+|.++...++....+++++|+++...
T Consensus        42 ~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~   79 (219)
T 3dlc_A           42 ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMN   79 (219)
T ss_dssp             CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHH
T ss_pred             CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHH
Confidence            3344 9999999999999999877667999999875433

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=95.41  E-value=0.024  Score=49.25  Aligned_cols=47  Identities=21%  Similarity=0.434  Sum_probs=37.8

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~  186 (319)
                      +.......++.+|||+|||+|.++..++.. + ..+++++|+++.....
T Consensus        85 i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~  133 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKL  133 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHH
Confidence            344456778999999999999999999866 6 7899999998654443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=95.40  E-value=0.021  Score=49.00  Aligned_cols=38  Identities=24%  Similarity=0.387  Sum_probs=31.2

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++++|||+|||+|.++..+++.  ..++++|+++.....
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~   69 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEI   69 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHH
Confidence            35789999999999999988876  799999998654433

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=95.40  E-value=0.011  Score=55.12  Aligned_cols=41  Identities=22%  Similarity=0.244  Sum_probs=35.3

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCC-ceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGA-AKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga-~~V~avd~d~~~~~~  186 (319)
                      +.++.+|||+|||+|.+++.++..+. ..++|+|+++.....
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~  256 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIG  256 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHH
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence            56889999999999999999998875 489999998765554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=95.40  E-value=0.016  Score=48.81  Aligned_cols=37  Identities=24%  Similarity=0.283  Sum_probs=31.1

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      +.++.+|||+|||+|.++...++.+. .++++|+++..
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~   77 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPEL   77 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHH
Confidence            44788999999999999999987754 89999997543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=95.40  E-value=0.011  Score=55.30  Aligned_cols=28  Identities=61%  Similarity=1.051  Sum_probs=26.9

Q ss_pred             EEecCCCChhhHHHHhcCCceEEeeecC
Q psy8709         153 IDVGAGTGILSIFAAQAGAAKVFAIEKS  180 (319)
Q Consensus       153 LD~G~GsG~l~i~aa~~ga~~V~avd~d  180 (319)
                      ||+|||+|.+++.+++.|+.+|+++|.+
T Consensus        68 LDlGcGtG~ls~~la~~g~~~V~gvD~s   95 (376)
T 3r0q_C           68 LDVGTGSGILAIWSAQAGARKVYAVEAT   95 (376)
T ss_dssp             EEESCTTTHHHHHHHHTTCSEEEEEESS
T ss_pred             EEeccCcCHHHHHHHhcCCCEEEEEccH
Confidence            7999999999999999999999999998

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=95.40  E-value=0.0075  Score=53.81  Aligned_cols=38  Identities=13%  Similarity=0.270  Sum_probs=30.9

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .++.+|||+|||+|.+.+.++..+...|+++|+++...
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l  107 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR  107 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHH
Confidence            47889999999999977767666667999999975443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=95.39  E-value=0.011  Score=54.59  Aligned_cols=29  Identities=66%  Similarity=0.971  Sum_probs=27.3

Q ss_pred             EEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         153 IDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      ||+|||+|.+++.+++.|+.+|+|+|+++
T Consensus        71 LDvGcG~G~~~~~la~~g~~~v~gvD~s~   99 (349)
T 3q7e_A           71 LDVGSGTGILCMFAAKAGARKVIGIECSS   99 (349)
T ss_dssp             EEESCTTSHHHHHHHHTTCSEEEEEECST
T ss_pred             EEEeccchHHHHHHHHCCCCEEEEECcHH
Confidence            89999999999999998999999999984

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.37  E-value=0.0039  Score=71.51  Aligned_cols=101  Identities=11%  Similarity=0.016  Sum_probs=50.0

Q ss_pred             CCcceeeccCCCchHHHHHHHc-C-----CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-ccCCCceeEE
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-G-----AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-ELPVESVDII  272 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g-----~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~~~~~~fD~I  272 (319)
                      +..+||++|.|+|..+..+.+. +     ..+++..|+|+ ..+.+++.++..    .+..-..|..+. .+....||+|
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCEE
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeEE
Confidence            4579999999999876655442 1     34789999998 777777665442    222211122221 1234679999


Q ss_pred             EeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      |+....|.   ..++...+.+++++|||||++++..
T Consensus      1316 ia~~vl~~---t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1316 VCNCALAT---LGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             EEECC-----------------------CCEEEEEE
T ss_pred             EEcccccc---cccHHHHHHHHHHhcCCCcEEEEEe
Confidence            97665443   3567788999999999999988754

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=95.36  E-value=0.01  Score=48.24  Aligned_cols=36  Identities=17%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ..++.+|||+|||+|.++...++.+. +++++|+++.
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~   50 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVI   50 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHH
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHH
Confidence            45788999999999999999998775 9999998754

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.36  E-value=0.018  Score=50.21  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...++.+|||+|||+|.++...+..++ +++++|+++....
T Consensus        34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~   73 (260)
T 1vl5_A           34 ALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILK   73 (260)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHH
T ss_pred             CCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHH
Confidence            345889999999999999999987765 9999999764443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=95.34  E-value=0.014  Score=50.29  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=32.7

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      ...++.+|||+|||+|.++..+++.++.+++++|+++..
T Consensus        88 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~  126 (235)
T 1jg1_A           88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPEL  126 (235)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHH
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHH
Confidence            567889999999999999999886654889999987543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=95.33  E-value=0.018  Score=50.14  Aligned_cols=39  Identities=13%  Similarity=0.278  Sum_probs=32.6

Q ss_pred             CCCeEEEecCCCChhhHHHHhc----C-CceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA----G-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~----g-a~~V~avd~d~~~~~~  186 (319)
                      ++++|||+|||+|..+...++.    + ..+|+++|+++.....
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~  124 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI  124 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHH
Confidence            5689999999999999998865    3 6899999999865443

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=95.33  E-value=0.015  Score=50.61  Aligned_cols=40  Identities=18%  Similarity=0.180  Sum_probs=32.9

Q ss_pred             CCCCeEEEecCCCChhhHHHHhc---CCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQA---GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~---ga~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||+|.+++.++..   +..+++|+|+++.....
T Consensus        50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~   92 (250)
T 1o9g_A           50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLEL   92 (250)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHH
Confidence            46789999999999999998865   46789999998765544

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=95.33  E-value=0.016  Score=50.03  Aligned_cols=41  Identities=15%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ....++.+|||+|||+|.++...+..+. .++++|+++....
T Consensus        17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~   57 (239)
T 1xxl_A           17 AECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVE   57 (239)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHH
T ss_pred             hCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHH
Confidence            3567899999999999999999987764 8999999764443

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=95.32  E-value=0.013  Score=54.16  Aligned_cols=29  Identities=66%  Similarity=1.038  Sum_probs=27.3

Q ss_pred             EEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         153 IDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      ||+|||+|.+++.+++.|+.+|+++|.++
T Consensus        55 LDiGcGtG~ls~~la~~g~~~V~~vD~s~   83 (348)
T 2y1w_A           55 LDVGCGSGILSFFAAQAGARKIYAVEAST   83 (348)
T ss_dssp             EEETCTTSHHHHHHHHTTCSEEEEEECST
T ss_pred             EEcCCCccHHHHHHHhCCCCEEEEECCHH
Confidence            79999999999999998989999999985

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=95.31  E-value=0.018  Score=52.66  Aligned_cols=42  Identities=24%  Similarity=0.465  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhc-CC-ceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQA-GA-AKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~-ga-~~V~avd~d~~~~~~  186 (319)
                      .+.++.+|||+|||+|.+++.+++. |+ .+++++|+++.....
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~  145 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDL  145 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHH
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Confidence            5678999999999999999999875 65 899999998755444

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=95.29  E-value=0.03  Score=48.26  Aligned_cols=36  Identities=17%  Similarity=0.136  Sum_probs=31.5

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      ++.+|||+|||+|.++...+..+...++++|+++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~  114 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDF  114 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHH
Confidence            688999999999999999887777799999987543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.27  E-value=0.016  Score=51.47  Aligned_cols=38  Identities=24%  Similarity=0.411  Sum_probs=32.3

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .++.+|||+|||+|.++..++..|. .++++|+++....
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~  156 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIA  156 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHH
Confidence            3788999999999999999998866 8999999865443

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=95.23  E-value=0.026  Score=50.86  Aligned_cols=46  Identities=15%  Similarity=0.237  Sum_probs=35.7

Q ss_pred             HHhcCC-CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         140 ILNNNS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       140 i~~n~~-~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      +..... +.++.+|||+|||+|.++..+++....+++++|+++....
T Consensus       108 l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~  154 (312)
T 3vc1_A          108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQAD  154 (312)
T ss_dssp             HHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHH
T ss_pred             HHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            444444 7789999999999999999988663467999999765443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=95.23  E-value=0.017  Score=49.68  Aligned_cols=39  Identities=15%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             CCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|.+++..++.. ...++|+|++......
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~   73 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA   73 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHH
Confidence            57799999999999999988654 6789999998654433

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=95.23  E-value=0.014  Score=53.88  Aligned_cols=50  Identities=20%  Similarity=0.208  Sum_probs=39.6

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCCcccH
Q psy8709         137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~~~~~  186 (319)
                      ..++.....+.++.++||+|||+|.+.++++..+  ...++|+|+++.....
T Consensus       192 a~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~  243 (354)
T 3tma_A          192 AQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGL  243 (354)
T ss_dssp             HHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHH
T ss_pred             HHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHH
Confidence            3344445567789999999999999999999754  5899999998765554

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=95.22  E-value=0.036  Score=48.49  Aligned_cols=36  Identities=33%  Similarity=0.552  Sum_probs=30.7

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      ++.+|||+|||+|.++...+..+ ..++++|+++...
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l   89 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEML   89 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHH
Confidence            78899999999999999988775 4799999875443

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=95.18  E-value=0.022  Score=49.10  Aligned_cols=36  Identities=17%  Similarity=0.411  Sum_probs=30.4

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      +.++++|||+|||+|.++..++..+. +++++|+++.
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~   74 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINED   74 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHH
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHH
Confidence            45779999999999999998887765 6899998753

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=95.18  E-value=0.016  Score=51.30  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=29.1

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .+.+|||+|||+|.++...+..+ .+|+|+|.+..
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~   72 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEA   72 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHH
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHH
Confidence            45789999999999999998877 57999998753

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.18  E-value=0.02  Score=48.66  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=30.3

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .++.+|||+|||+|.++..++..+. +++++|+++.
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~   63 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSE   63 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHH
Confidence            4788999999999999999988754 8999999754

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=95.17  E-value=0.032  Score=52.39  Aligned_cols=39  Identities=13%  Similarity=0.122  Sum_probs=32.7

Q ss_pred             CCCCeEEEecCCCChhhHHHHhc--CCceEEeeecCCCccc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSGTPIR  185 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~--ga~~V~avd~d~~~~~  185 (319)
                      .++.+|||+|||+|.+.+.+++.  ....++|+|+++....
T Consensus        38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~   78 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD   78 (421)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC
T ss_pred             CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence            45679999999999999999854  4689999999986654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=95.12  E-value=0.014  Score=52.28  Aligned_cols=39  Identities=31%  Similarity=0.486  Sum_probs=32.6

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|.+++.+++.+..+++++|+++.....
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~  161 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEI  161 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHH
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            567999999999999999886677899999998655444

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=95.11  E-value=0.015  Score=49.20  Aligned_cols=42  Identities=26%  Similarity=0.417  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~~~~~  186 (319)
                      ...++.+|||+|||+|.++..+++.+  ..+++++|.++.....
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~   77 (219)
T 3dh0_A           34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNY   77 (219)
T ss_dssp             TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence            45678899999999999999988664  5699999997654433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.11  E-value=0.015  Score=52.66  Aligned_cols=150  Identities=16%  Similarity=0.074  Sum_probs=79.9

Q ss_pred             HHHhhhcccccccCCCCCCCcchhhHhhhhhHhHhhHHHHhhhhhhhhcccccCCccccchHHHHHHHHHHHHHHHHHHH
Q psy8709           8 QCVASRLDSMDMHADSDDNDASVKDCYQRNWYKQAVTSVIVRSVILVLSVTIMSPPACSDLEEKNAEIDMRNEDIAQMRH   87 (319)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   87 (319)
                      |-++++|.+|+-+.++.+    |..-|+|+=.  -+  +|        ...-...+...+..-..+.++.+...+.++-.
T Consensus        11 ~~~~~~l~~~~~~~~~~~----~~~~~~~~~~--l~--~~--------~~~~~v~~~~~~~vl~~~~~~~l~~~~~~~y~   74 (298)
T 3fpf_A           11 KRIASRLEGMNYHFDEMD----TSGVMPLLDE--IE--EI--------AHDSTIDFESAKHILDDAEMNHALSLIRKFYV   74 (298)
T ss_dssp             HHHHHHHGGGTTCGGGCC----TTTTHHHHHH--HH--HH--------HTCTTSCHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcccc----HHHHHHHHHH--HH--Hh--------cccCCcCHHHHHHHhcChhHHHHHHHHHHHHH
Confidence            457889999988877755    4444443211  00  00        00000111112222223344555666666666


Q ss_pred             HHHHHhhhccccccccccCCCcchhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhh-HHH
Q psy8709          88 LMQDMLNKKEEDEEGENKTRRHDKYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILS-IFA  166 (319)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~-i~a  166 (319)
                      ....++...|...-...   +..-..+..+..|..+..+.+.+.     .     -..+.++++|||+|||+|.++ +.+
T Consensus        75 ~~~~~~E~~wa~~l~~~---~~p~~~l~~fpy~~~~~~l~~~E~-----~-----la~l~~g~rVLDIGcG~G~~ta~~l  141 (298)
T 3fpf_A           75 NLGMKLEMEKAQEVIES---DSPWETLRSFYFYPRYLELLKNEA-----A-----LGRFRRGERAVFIGGGPLPLTGILL  141 (298)
T ss_dssp             HHHHHHHHHHHHHHHHC---SSHHHHHHTSTTHHHHHHHHHHHH-----H-----HTTCCTTCEEEEECCCSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc---CChHHhhccCCCcccHHHHHHHHH-----H-----HcCCCCcCEEEEECCCccHHHHHHH
Confidence            66666655554422211   111223343444433333333221     1     146789999999999998765 556


Q ss_pred             HhcCCceEEeeecCCCcccH
Q psy8709         167 AQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       167 a~~ga~~V~avd~d~~~~~~  186 (319)
                      ++....+|+++|+++.....
T Consensus       142 A~~~ga~V~gIDis~~~l~~  161 (298)
T 3fpf_A          142 SHVYGMRVNVVEIEPDIAEL  161 (298)
T ss_dssp             HHTTCCEEEEEESSHHHHHH
T ss_pred             HHccCCEEEEEECCHHHHHH
Confidence            76656789999998765554

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=95.09  E-value=0.045  Score=49.71  Aligned_cols=103  Identities=13%  Similarity=0.054  Sum_probs=61.0

Q ss_pred             cceeeccCCCchHHHHHH----H-cCCC--EEEEEecHH---------HHHH-HHHHHHhc----CCCCcEEEEEcCccc
Q psy8709         203 KHVIDVGAGTGILSIFAA----Q-AGAA--KVFAIEKSD---------IAYE-TIDIIRKN----KYDSQIEVYHKLLED  261 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la----~-~g~~--~V~gvD~s~---------~i~~-a~~~~~~~----g~~~~i~~i~~d~~~  261 (319)
                      -+|||+|-|||.......    + .+..  +++.+|..+         .... ........    +-.-..++..+|+.+
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            589999999998654332    2 2222  567777422         0111 11122211    111245678889866


Q ss_pred             cc--cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         262 VE--LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       262 ~~--~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      .-  ++..+||+|+.++...--.++---..+++.++++++|||.+.
T Consensus       178 ~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la  223 (308)
T 3vyw_A          178 RIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV  223 (308)
T ss_dssp             HGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred             HHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence            42  344579999987643322222223678999999999999987

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=95.08  E-value=0.051  Score=47.11  Aligned_cols=39  Identities=15%  Similarity=0.298  Sum_probs=32.3

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      ....++.+|||+|||+|.++...+..+ .+++++|+++..
T Consensus        35 ~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~   73 (263)
T 2yqz_A           35 HPKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAM   73 (263)
T ss_dssp             CCSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHH
T ss_pred             cCCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHH
Confidence            345678999999999999999988775 689999987543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=95.07  E-value=0.025  Score=48.74  Aligned_cols=43  Identities=26%  Similarity=0.410  Sum_probs=35.6

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .....++.+|||+|||+|.+++.+++. +.+++++|+++.....
T Consensus        86 ~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~  128 (248)
T 2yvl_A           86 KLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKT  128 (248)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHH
T ss_pred             hcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHH
Confidence            345678999999999999999999877 7899999998654443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=95.06  E-value=0.017  Score=54.26  Aligned_cols=39  Identities=44%  Similarity=0.475  Sum_probs=34.4

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ++++|||+|||+|.+++.++..|+.+|+++|+++.....
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~  255 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIET  255 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            789999999999999999998888999999998654443

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=95.06  E-value=0.018  Score=49.43  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=31.4

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .++.+|||+|||+|.++...++.+ .+++++|+++....
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~   73 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLS   73 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHH
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHH
Confidence            378899999999999999988776 47999998754433

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.02  E-value=0.07  Score=48.48  Aligned_cols=72  Identities=17%  Similarity=0.106  Sum_probs=54.0

Q ss_pred             ceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccchhhh
Q psy8709         204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMGYFL  281 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~~l  281 (319)
                      +|+|+-||.|.++.-+.+.|..-+.++|+++   .|.+..+.|.   .-.++.+|+.++... ...+|+++..++...+
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~---~a~~ty~~N~---~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~f   74 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDK---SIWKTYESNH---SAKLIKGDISKISSDEFPKCDGIIGGPPSQSW   74 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCT---TTHHHHHHHC---CSEEEESCGGGCCGGGSCCCSEEECCCCGGGT
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCH---HHHHHHHHHC---CCCcccCChhhCCHhhCCcccEEEecCCCCCc
Confidence            6899999999999999999998899999999   3333333332   135788999887432 2479999988876543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=95.01  E-value=0.016  Score=51.58  Aligned_cols=39  Identities=10%  Similarity=0.013  Sum_probs=32.8

Q ss_pred             CCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCccc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIR  185 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~  185 (319)
                      .+..+|||+|||+|.+++..+.. +...++++|++.....
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le  170 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVG  170 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHH
Confidence            45779999999999999998866 6999999999854433

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=94.99  E-value=0.029  Score=50.93  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=34.4

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhcC--CceEEeeecCCCcc
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSGTPI  184 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~g--a~~V~avd~d~~~~  184 (319)
                      ......++.+|||+|||+|.++..+++.+  ..+|+++|+++...
T Consensus        69 ~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~  113 (317)
T 1dl5_A           69 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC  113 (317)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH
T ss_pred             HhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHH
Confidence            33456789999999999999999988665  36799999985444

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=94.99  E-value=0.023  Score=53.33  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=29.2

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCC
Q psy8709         136 YKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA  171 (319)
Q Consensus       136 ~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga  171 (319)
                      +..++.....+.++.++||++||||.+.++++..++
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~  218 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGI  218 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHT
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHh
Confidence            445555666778899999999999999999997653

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=94.96  E-value=0.021  Score=49.66  Aligned_cols=40  Identities=15%  Similarity=0.122  Sum_probs=32.1

Q ss_pred             CCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||+|.+++..++. ....++|+|++......
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~   85 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDY   85 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHH
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHH
Confidence            35678999999999999998865 46789999998655443

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=94.94  E-value=0.031  Score=48.47  Aligned_cols=45  Identities=27%  Similarity=0.363  Sum_probs=36.4

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~  186 (319)
                      ....+.++.+|||+|||+|.++..+++. + ..+++++|.++.....
T Consensus        90 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~  136 (258)
T 2pwy_A           90 TLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQ  136 (258)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            3445778999999999999999998866 6 6899999997654443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=94.94  E-value=0.042  Score=48.60  Aligned_cols=40  Identities=18%  Similarity=0.406  Sum_probs=32.9

Q ss_pred             CCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||+|.+++.++ ..+..+++++|+++.....
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~  148 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSL  148 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHH
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            467899999999999999988 4567899999998654443

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=94.93  E-value=0.029  Score=49.64  Aligned_cols=46  Identities=30%  Similarity=0.425  Sum_probs=36.9

Q ss_pred             HhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709         141 LNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       141 ~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~  186 (319)
                      .....+.++.+|||+|||+|.+++.+++. + ..+++++|+++.....
T Consensus       105 ~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~  152 (277)
T 1o54_A          105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKL  152 (277)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHH
T ss_pred             HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence            33456778999999999999999999866 6 6899999997654443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=94.91  E-value=0.028  Score=47.97  Aligned_cols=41  Identities=27%  Similarity=0.401  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCC------ceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGA------AKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga------~~V~avd~d~~~~~  185 (319)
                      .+.++.+|||+|||+|.++..+++...      .+++++|+++....
T Consensus        77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~  123 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVN  123 (227)
T ss_dssp             TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHH
T ss_pred             hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHH
Confidence            456889999999999999999886643      69999999764443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=94.89  E-value=0.046  Score=48.51  Aligned_cols=42  Identities=21%  Similarity=0.335  Sum_probs=34.1

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCccc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~  185 (319)
                      ....++.+|||+|||+|.++...+.. + +.+++++|+++....
T Consensus        18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~   61 (284)
T 3gu3_A           18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA   61 (284)
T ss_dssp             SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHH
T ss_pred             hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH
Confidence            35668899999999999999998855 4 579999999865443

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=94.89  E-value=0.024  Score=50.66  Aligned_cols=40  Identities=30%  Similarity=0.398  Sum_probs=33.2

Q ss_pred             CCCCeEEEecCCCChhhHHHHh--cCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQ--AGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~--~ga~~V~avd~d~~~~~~  186 (319)
                      .++.+|||+|||+|.++...++  .+..+++++|+++.....
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~   76 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKT   76 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHH
Confidence            3789999999999999999885  368899999998654443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=94.84  E-value=0.015  Score=50.66  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=31.4

Q ss_pred             CCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      ++.+|||+|||+|.+++.++.. ...+++++|+++.....
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~  104 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNY  104 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            5789999999999999887754 46899999998654443

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.84  E-value=0.031  Score=51.28  Aligned_cols=72  Identities=11%  Similarity=0.034  Sum_probs=52.4

Q ss_pred             cceeeccCCCchHHHHHHHcCC--CEE-EEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---cCCCceeEEEec
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGA--AKV-FAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---LPVESVDIIISE  275 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~--~~V-~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---~~~~~fD~Iis~  275 (319)
                      .+++|+.||.|.++.-+.+.|.  ..| .++|+++ ..+.-+.|..     ..  ++.+|+.++.   ++...+|+++..
T Consensus        11 ~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~-----~~--~~~~DI~~~~~~~i~~~~~Dil~gg   83 (327)
T 3qv2_A           11 VNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK-----EE--VQVKNLDSISIKQIESLNCNTWFMS   83 (327)
T ss_dssp             EEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC-----CC--CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred             CEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC-----CC--cccCChhhcCHHHhccCCCCEEEec
Confidence            5899999999999999999884  577 8999999 5444444331     12  5678888774   222369999988


Q ss_pred             cchhhh
Q psy8709         276 WMGYFL  281 (319)
Q Consensus       276 ~~~~~l  281 (319)
                      ++...+
T Consensus        84 pPCQ~f   89 (327)
T 3qv2_A           84 PPCQPY   89 (327)
T ss_dssp             CCCTTC
T ss_pred             CCccCc
Confidence            775544

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=94.81  E-value=0.024  Score=47.48  Aligned_cols=41  Identities=24%  Similarity=0.309  Sum_probs=29.7

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++.+|||+|||+|.++.........+++++|.++.....
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~   61 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKK   61 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHH
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            34688999999999998554433334589999998654443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=94.79  E-value=0.028  Score=53.56  Aligned_cols=41  Identities=22%  Similarity=0.293  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ...++.+|||+|||+|.+++.++.. +.+|+|+|+++.....
T Consensus       283 ~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~  323 (433)
T 1uwv_A          283 DVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEK  323 (433)
T ss_dssp             TCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHH
T ss_pred             cCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHH
Confidence            4567889999999999999999977 6799999998765554

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=94.79  E-value=0.02  Score=52.65  Aligned_cols=38  Identities=34%  Similarity=0.424  Sum_probs=32.9

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .++++|||+|||+|.+++. ++ ++.+|+++|+++.....
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~  231 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIEL  231 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHH
Confidence            4789999999999999999 88 89999999998654443

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.77  E-value=0.021  Score=52.30  Aligned_cols=64  Identities=19%  Similarity=0.137  Sum_probs=0.0

Q ss_pred             CCcEEEEEcCcccc--ccCCCceeEEEeccchhhh-----------cchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         249 DSQIEVYHKLLEDV--ELPVESVDIIISEWMGYFL-----------LFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       249 ~~~i~~i~~d~~~~--~~~~~~fD~Iis~~~~~~l-----------~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      .....++++|..+.  .++.++||+|++++++...           .....+...+.++.++|+|||.+++.....+
T Consensus        12 ~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~   88 (323)
T 1boo_A           12 TSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAY   88 (323)
T ss_dssp             CSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCE
T ss_pred             cCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEe

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=94.76  E-value=0.02  Score=50.70  Aligned_cols=36  Identities=31%  Similarity=0.251  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      ...++.+|||+|||+|.+++.++..| .+|+++|+++
T Consensus        80 ~~~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~  115 (258)
T 2r6z_A           80 NHTAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHP  115 (258)
T ss_dssp             TGGGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCH
T ss_pred             CcCCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECCh
Confidence            34567899999999999999999876 5899999986

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=94.75  E-value=0.022  Score=47.52  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=28.9

Q ss_pred             CCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         149 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       149 ~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      +.+|||+|||+|.++...+..|. +++++|+++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~   74 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATR   74 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHH
Confidence            78999999999999999887755 8999998754

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=94.75  E-value=0.045  Score=46.72  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=30.5

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      .++.+|||+|||+|.++...++.+. +++++|+++..
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~   74 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDM   74 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHH
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHH
Confidence            4778999999999999999887765 89999987543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=94.69  E-value=0.028  Score=52.72  Aligned_cols=40  Identities=30%  Similarity=0.500  Sum_probs=33.3

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++.+|||+|||+|.+++.+++.++ +|+++|++......
T Consensus       231 ~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~  270 (381)
T 3dmg_A          231 GVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLS  270 (381)
T ss_dssp             TTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHH
T ss_pred             CCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence            45788999999999999999998864 99999998654443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=94.68  E-value=0.033  Score=49.22  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=31.6

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      ...++.+|||+|||+|.++..++. ....++++|+++..
T Consensus        54 ~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~   91 (279)
T 3ccf_A           54 NPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATM   91 (279)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHH
Confidence            346788999999999999999888 45689999987543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=94.62  E-value=0.032  Score=47.17  Aligned_cols=34  Identities=35%  Similarity=0.467  Sum_probs=29.7

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ++.+|||+|||+|.++...+..+ .+++++|+++.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~   78 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSRE   78 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHH
Confidence            78899999999999999988775 58999998754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=94.59  E-value=0.079  Score=44.38  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=27.7

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      ++.+|||+|||+|.++...   +..+++++|+++..
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~   68 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAM   68 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHH
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHH
Confidence            8899999999999988776   55589999987543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=94.56  E-value=0.035  Score=48.11  Aligned_cols=43  Identities=16%  Similarity=0.221  Sum_probs=33.9

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcc
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPI  184 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~  184 (319)
                      ......++.+|||+|||+|.++..++.. ....++++|+++...
T Consensus        27 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~   70 (259)
T 2p35_A           27 AQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDML   70 (259)
T ss_dssp             TTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHH
T ss_pred             HhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            3345568899999999999999988855 467899999875443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=94.55  E-value=0.039  Score=49.09  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=32.9

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      .+.++.+|||+|||+|.++..+++....+++++|+++....
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~  119 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNK  119 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHH
Confidence            56788999999999999999888652348999999765433

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=94.51  E-value=0.038  Score=48.91  Aligned_cols=47  Identities=21%  Similarity=0.415  Sum_probs=34.8

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhc--CCceEEeeecCCCccc
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSGTPIR  185 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~--ga~~V~avd~d~~~~~  185 (319)
                      .+.......++.+|||+|||+|.++..+++.  ...+++++|+++....
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~  149 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLK  149 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHH
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHH
Confidence            3444456778999999999999999998865  3689999999764443

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=94.50  E-value=0.031  Score=48.80  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=29.5

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ++.+|||+|||+|.++...++.+. .++++|+++.
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~   83 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSAD   83 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHH
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHH
Confidence            568999999999999999988764 7999998753

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=94.48  E-value=0.034  Score=46.34  Aligned_cols=36  Identities=22%  Similarity=0.354  Sum_probs=29.8

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .++ +|||+|||+|.++..+++.+. +++++|+++...
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~   64 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGL   64 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHH
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHH
Confidence            355 999999999999999887764 899999875443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=94.47  E-value=0.06  Score=47.40  Aligned_cols=46  Identities=24%  Similarity=0.510  Sum_probs=36.8

Q ss_pred             HhcCCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcccH
Q psy8709         141 LNNNSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       141 ~~n~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~~  186 (319)
                      .....+.++.+|||+|||+|.++..++. .+ ..+++++|+++.....
T Consensus        92 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~  139 (280)
T 1i9g_A           92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEH  139 (280)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             HHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            3345577899999999999999999886 45 6899999998655443

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=94.47  E-value=0.037  Score=47.69  Aligned_cols=38  Identities=29%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~  184 (319)
                      .++++|||+|||+|..++..+... ..+++++|+++...
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~  108 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMI  108 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHH
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            367899999999999999998754 78999999986443

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=94.45  E-value=0.027  Score=51.27  Aligned_cols=42  Identities=24%  Similarity=0.289  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhc--CCceEEeeecCCCcccH
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~--ga~~V~avd~d~~~~~~  186 (319)
                      ...++.+|||+|||+|..++.++..  +...|+++|++..+...
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~  142 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLAS  142 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence            3568999999999999999998853  46899999998765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	319
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	3e-30
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-29
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	6e-29
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	2e-07
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	0.001
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	2e-07
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	1e-04
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	9e-07
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	1e-06
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-04
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	2e-06
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	3e-06
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	5e-04
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	2e-05
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	2e-05
d2esra1	152	c.66.1.46 (A:28-179) Putative methyltransferase SP	6e-05
d1i4wa_	322	c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake	2e-04
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	2e-04
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	3e-04
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	7e-04
d2py6a1	395	c.66.1.56 (A:14-408) Methyltransferase FkbM {Methy	8e-04
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	9e-04
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.001
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.001
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	0.001
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	0.001
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	0.002
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.004
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.004

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  114 bits (286), Expect = 3e-30
 Identities = 64/133 (48%), Positives = 98/133 (73%)

Query: 183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDI 242
            +RT +Y++++ +N+ LF +K V+DVG+GTGIL +FAA+AGA KV  IE S I+   + I
Sbjct: 15  EVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKI 74

Query: 243 IRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG 302
           ++ NK D  + +    +E+VELPVE VDIIISEWMGY L +E+M+++V+ AR+++L PDG
Sbjct: 75  VKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDG 134

Query: 303 VVCPNRFTLSLCG 315
           ++ P+R TL +  
Sbjct: 135 LIFPDRATLYVTA 147

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 2e-29
 Identities = 80/203 (39%), Positives = 108/203 (53%), Gaps = 53/203 (26%)

Query: 114 FNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAK 173
           F+SY    IH EM+KD +RTESY+  I  N                              
Sbjct: 1   FSSYGHYGIHEEMLKDKIRTESYRDFIYQN------------------------------ 30

Query: 174 VFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 233
                                    +F +K V+DVG GTGILS+FAA+AGA KV  +++S
Sbjct: 31  -----------------------PHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS 67

Query: 234 DIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDA 293
           +I Y+ +DIIR NK +  I +    +E+V LPVE VD+IISEWMGYFLLFE+M+DSV+ A
Sbjct: 68  EILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYA 127

Query: 294 RNRFLKPDGVVCPNRFTLSLCGA 316
           +N++L   G V P+  T+SL   
Sbjct: 128 KNKYLAKGGSVYPDICTISLVAV 150

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (278), Expect = 6e-29
 Identities = 74/204 (36%), Positives = 106/204 (51%), Gaps = 53/204 (25%)

Query: 112 YYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGA 171
           YYF+SY+   IH EM++DTVRT SY++AI+ N                            
Sbjct: 2   YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQN---------------------------- 33

Query: 172 AKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIE 231
                                    K LF +K V+DVG GTGILS+FAA+ GA  V  ++
Sbjct: 34  -------------------------KDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVD 68

Query: 232 KSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVI 291
            S I     +++  N +  +I +    LEDV LP   VDIIISEWMGYFLL+E+M+D+V+
Sbjct: 69  MSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVL 128

Query: 292 DARNRFLKPDGVVCPNRFTLSLCG 315
            AR+ +L   G++ P++ ++ L G
Sbjct: 129 YARDHYLVEGGLIFPDKCSIHLAG 152

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 9/124 (7%)

Query: 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY 248
           +  A L          V+D+G G G   +   +AG  + + +   DIA  +I+  R    
Sbjct: 12  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGV---DIAEVSINDARVRAR 68

Query: 249 DSQIEVYHKLL------EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG 302
           + +                ++L  E   I       Y       +D       R L+P G
Sbjct: 69  NMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGG 128

Query: 303 VVCP 306
               
Sbjct: 129 YFIM 132

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 136 YKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI 184
           +  A L          V+D+G G G   +   +AG  + + ++ +   I
Sbjct: 12  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI 60

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 11/146 (7%)

Query: 171 AAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGA---AKV 227
           AA+V+ +    T  RT  YK+ +L          V+DV  GTG+ SI   + G    +  
Sbjct: 26  AARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVD 85

Query: 228 FAIEKSDIAYETIDIIRKNKYDSQIEVYHK---LLEDVELPVESVDIIISEWMGYFLLF- 283
            + +    A +     RK     +  +       L+      +  D +I     +  L  
Sbjct: 86  ASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPD 145

Query: 284 ----ETMIDSVIDARNRFLKPDGVVC 305
               ++     +      ++P G++ 
Sbjct: 146 SKGDQSEHRLALKNIASMVRPGGLLV 171

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 110 DKYYFNSYEDAHIHAEMIKDT-VRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQ 168
           D+Y       A +    I DT  RT  YK+ +L          V+DV  GTG+ SI   +
Sbjct: 19  DQYADGEA--ARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVE 76

Query: 169 AGA 171
            G 
Sbjct: 77  EGF 79

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETI-DIIRKNKYDSQIEVYHKLL 259
            ++ V+D+ AG G LS+  A  G AKV AIEK    ++ + + I  NK + ++  Y+   
Sbjct: 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN 166

Query: 260 EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
            D      +  I+    MGY +     I   +       K   ++
Sbjct: 167 RDFPGENIADRIL----MGYVVRTHEFIPKAL----SIAKDGAII 203

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 6/135 (4%)

Query: 173 KVFAIEKSGTPIR---TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFA 229
           ++F I +S   I    TE   + +     +     ++D+G+G+G +    A+        
Sbjct: 2   RIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTG 61

Query: 230 IEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDS 289
           I+ S +         +    S+   +        +  E  D+       +          
Sbjct: 62  IDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIA---GGFAG 118

Query: 290 VIDARNRFLKPDGVV 304
             +   + LKP G++
Sbjct: 119 AEELLAQSLKPGGIM 133

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 114 FNSYEDAH-IHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAA 172
           F   E  H IH    ++          +     +     ++D+G+G+G +    A+    
Sbjct: 4   FTISESEHRIHNPFTEEKYA------TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGI 57

Query: 173 KVFAIEKS 180
               I+ S
Sbjct: 58  TGTGIDMS 65

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 202 NKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLED 261
              V+D+GAG G  ++  +     +   ++ +    E      + K    +       E 
Sbjct: 17  EHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 75

Query: 262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           +  P +S DII      Y     + +   +    R LK DG   
Sbjct: 76  LPFPDDSFDII---TCRYAAHHFSDVRKAVREVARVLKQDGRFL 116

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQI 252
           ++   +L  N+ V+DV  G G ++   A     KV A    D+  + + + R     +  
Sbjct: 7   LMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAF---DLTEDILKVARAFIEGNGH 62

Query: 253 EVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           +    +  D E    + +                  S +    R LK  G + 
Sbjct: 63  QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL 115

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKS 180
           ++   +L  N+ V+DV  G G ++   A     KV A + +
Sbjct: 7   LMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLT 46

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 187 ESYKSAILNNKSLFN-NKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDII 243
           + Y S ++N         H++D G G G L +         +K   I+  +        +
Sbjct: 12  DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL 71

Query: 244 RKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG- 302
            +        +            +  DI I      FLL  T  ++++      +K  G 
Sbjct: 72  FRLLPYDSEFLEGD--ATEIELNDKYDIAIC---HAFLLHMTTPETMLQKMIHSVKKGGK 126

Query: 303 --VVCPNRFT 310
                P+  +
Sbjct: 127 IICFEPHWIS 136

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 14/119 (11%), Positives = 34/119 (28%), Gaps = 11/119 (9%)

Query: 197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYH 256
              F   +++++G+  G  +    +     +  +E S+ A        K+        + 
Sbjct: 16  TPFFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKDGITYIHSRFE 74

Query: 257 KLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDG---VVCPNRFTLS 312
                                      +  +  +    + +L   G   +VCPN   +S
Sbjct: 75  D-------AQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS 126

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 5/118 (4%)

Query: 190 KSAILNN-KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY 248
           + AI N     FN   V+D+ AG+G L+I A   G +    +EK+  A   I        
Sbjct: 2   RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK 61

Query: 249 DSQIEVYHKLL--EDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVV 304
                   K+     ++      D++  +           I+++       L    +V
Sbjct: 62  AENRFTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAA--KNLLSEQVMV 117

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 4/66 (6%)

Query: 193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAK-VFAIEKSDIAYETIDIIRKNKYDSQ 251
           +           V+D+  G GI S         +    +EK          +      S 
Sbjct: 35  LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRS---SLYKFLNAKFEGSP 91

Query: 252 IEVYHK 257
           +++  +
Sbjct: 92  LQILKR 97

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 23/139 (16%)

Query: 198 SLFNNKHVIDVGAGTGILSI-FAAQAGAAKVFAIEKSDIAYETIDIIRKN-KYDSQIEVY 255
           ++ N K V+D  + TGI  I FA +  A +V+    +DI+ +  +++++N   +   E+ 
Sbjct: 42  NILNPKIVLDALSATGIRGIRFALETPAEEVWL---NDISEDAYELMKRNVMLNFDGELR 98

Query: 256 HKLLEDVELPVESVDIIISEWMGYFLLFETMIDSV-----------IDARNRFLKPDGVV 304
                 +    +++ I   +              +           +D   R  K  G++
Sbjct: 99  ESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGIL 158

Query: 305 C----PNRFTLSLCGAYAE 319
                       LCGA+  
Sbjct: 159 GVTATDGA---PLCGAHPR 174

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 6/126 (4%)

Query: 186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRK 245
               +  I+       N   +DVG GTG +++  A             +    T   +++
Sbjct: 18  AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQR 77

Query: 246 NKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           +     + +      +    +  +DI +    G        +  ++      LKP G + 
Sbjct: 78  HGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG------ELQEILRIIKDKLKPGGRII 131

Query: 306 PNRFTL 311
                L
Sbjct: 132 VTAILL 137

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 3/117 (2%)

Query: 189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY 248
           +   I    +    + V+D+  GTGI ++  A+    +V  ++  +          K + 
Sbjct: 29  FVEEIFKEDAKREVRRVLDLACGTGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERN 87

Query: 249 DSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
                +   +LE         D +   +       E  +  +       LKP GV  
Sbjct: 88  LKIEFLQGDVLEIA--FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} Length = 395

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 28/215 (13%), Positives = 64/215 (29%), Gaps = 23/215 (10%)

Query: 56  SVTIMSPPACSDLEEKNAEIDMRN--EDIAQMRHLMQDMLNKKEEDEEGENKTRRHDKYY 113
           +V         D    +   D+         +   + D  + +                 
Sbjct: 132 AVRAFGLQGNVDYRVDDWGADIVRNIPAFQTLAQRLADDYSVQTLY----------AVLN 181

Query: 114 FNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQA---G 170
           F+   +   + E+ +    T  ++S +L  +   +++ ++D GA  G             
Sbjct: 182 FHLTCEPEYYHEVERP-YSTLYFRSGLLRFS---DSEKMVDCGASIGESLAGLIGVTKGK 237

Query: 171 AAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAG--TGILSIFAAQAGAAKVF 228
             +V+ IE     ++T         + +  +   V   GAG  T  +           V 
Sbjct: 238 FERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENTIRVPFNHEGGHGGFVK 297

Query: 229 AIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE 263
             +      + ID+   +        + K+  D+E
Sbjct: 298 PADADHEPADLIDVRPIDDIIDDAPTFIKM--DIE 330

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.0 bits (88), Expect = 9e-04
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 23/125 (18%)

Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG--AAKVFAIEKSDIAYETIDIIRKNKY 248
           + I++   +F    V++ GAG+G L++   +A   A +V + E+     +  +  R+N  
Sbjct: 86  AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA---DHAEHARRNVS 142

Query: 249 D------SQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMID--SVIDARNRFLKP 300
                      +    L D ELP  SVD               M+    V+DA +R L  
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELPDGSVDRA----------VLDMLAPWEVLDAVSRLLVA 192

Query: 301 DGVVC 305
            GV+ 
Sbjct: 193 GGVLM 197

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 14/124 (11%), Positives = 37/124 (29%), Gaps = 4/124 (3%)

Query: 184 IRTESYKSAILN--NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETID 241
           +  + +   I+    ++       +D+  GTG L+                 ++  E  +
Sbjct: 18  VDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAEN 77

Query: 242 IIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPD 301
             R      ++        ++ +  +   I        +++    +     A +  LK  
Sbjct: 78  KFRSQGLKPRLACQDI--SNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135

Query: 302 GVVC 305
           GV  
Sbjct: 136 GVFI 139

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 115 NSYED-AHIHAEMIKDTVRTESYKSAILN--NNSLFNNKHVIDVGAGTGILSIFAAQAGA 171
           N Y   AHI+ ++I+  V  + +   I+     +       +D+  GTG L+        
Sbjct: 1   NCYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK 60

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN 246
              + VID G G GIL+  +   GA  V A +    A   I+  ++N
Sbjct: 47  IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDA---IETAKRN 90

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKNKY 248
           S I+    L     +++VG G+G +S +   A  G   +  +E+ +   +         Y
Sbjct: 75  SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 134

Query: 249 DSQIEVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
           D       +      +  +  D +I++    +   + +           +KP  V  
Sbjct: 135 DIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIA--------SMMKPGSVAT 183

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKN-KYD 249
           S +L    +      +D+G G G  S++ A       + +   D    ++  + +    +
Sbjct: 20  SDVLAAAKVVAPGRTLDLGCGNGRNSLYLAA----NGYDVTAWDKNPASMANLERIKAAE 75

Query: 250 SQIEVYHKLLEDVELPVE-SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC 305
               +   L++   L  +   D I+S  +  FL  +T+   +I    R  KP G   
Sbjct: 76  GLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPG-LIANMQRCTKPGGYNL 131

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 10/123 (8%)

Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSDIAYETIDIIRKNKYD 249
           + +++   + ++   +D+G+G G + +  A A      + +EK+DI  +        ++ 
Sbjct: 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAK-YAETMDREFR 199

Query: 250 SQIEVYHKLLEDVELPVESVDIIISE--------WMGYFLLFETMIDSVIDARNRFLKPD 301
             ++ Y K   +  L                          F   +D  +  R   +K  
Sbjct: 200 KWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEG 259

Query: 302 GVV 304
           G +
Sbjct: 260 GRI 262

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 18/128 (14%)

Query: 191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKN--K 247
           S +     L      +D+G+G G   + AA   G A  F  E  D   +  D+      +
Sbjct: 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMD---DASDLTILQYEE 262

Query: 248 YDSQIEVYHKLLEDVELPV-------ESVDIIISE----WMGYFLLFETMIDSVIDARNR 296
              + ++Y   L +VE  +         V  +I +     +  FL  E + +  ++   +
Sbjct: 263 LKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDL-NKKVEKILQ 321

Query: 297 FLKPDGVV 304
             K    +
Sbjct: 322 TAKVGCKI 329

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.94
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.93
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.93
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.81
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.8
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.8
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.79
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.78
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.76
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.74
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.74
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.74
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.72
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.7
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.7
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.69
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.68
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.68
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.67
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.67
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.67
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.66
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.64
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.63
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.62
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.61
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.6
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.6
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.6
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.59
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.59
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.57
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.57
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.55
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.55
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.54
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.54
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.53
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.53
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.52
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.5
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.5
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.47
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.46
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.46
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.46
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.45
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.45
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.45
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.45
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.44
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.43
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.43
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.43
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.42
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.39
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.39
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.37
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.34
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.32
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.3
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.28
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.25
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.25
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.22
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.16
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.15
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.11
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.09
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.93
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.91
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.81
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.81
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.8
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.78
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.77
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.73
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.72
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.66
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.64
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.63
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.63
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.63
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.63
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.61
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.53
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.51
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.48
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.48
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.48
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.4
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.4
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.36
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.31
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.26
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.25
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.91
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.76
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.75
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.71
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.64
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.63
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.56
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.56
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.54
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.49
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.39
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.36
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.31
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.31
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.28
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.27
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.17
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.17
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.14
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.1
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	96.92
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	96.86
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	96.86
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.86
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.84
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.8
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.75
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.71
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.69
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.69
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.67
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	96.63
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.61
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.6
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	96.56
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.56
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	96.56
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.55
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	96.53
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	96.53
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.52
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.38
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.38
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.3
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.22
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.21
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.18
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.16
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	96.16
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	96.16
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.15
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.12
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	96.09
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	96.08
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	96.08
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.06
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	96.05
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.03
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.99
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	95.97
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	95.93
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	95.7
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.66
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	95.66
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	95.66
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.61
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.58
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.32
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	95.28
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.25
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	95.22
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.21
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.2
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	95.18
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.93
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	94.88
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	94.86
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	94.82
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	94.7
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	94.65
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	94.59
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	94.52
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.42
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.14
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	94.02
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	94.01
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.95
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	93.93
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.91
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.78
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	93.78
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.72
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	93.7
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.59
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.58
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.36
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	93.09
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	93.07
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	93.01
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	92.95
d2h00a1	250	Methyltransferase 10 domain containing protein MET	92.83
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	92.73
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.52
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	92.04
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	92.01
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	91.79
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	91.67
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	91.49
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.4
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	91.0
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.42
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.32
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	90.16
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	90.16
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.14
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	89.72
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	89.24
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	89.23
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.19
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	88.56
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	88.46
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.02
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	86.83
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	86.61
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	86.49
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	85.15
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	82.84
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	82.75
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	82.63
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	82.43
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	81.94
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	81.67
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	81.6
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	81.59
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	81.07
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	80.96
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	80.95
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	80.83
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	80.16
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	80.06
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	80.05
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	80.01

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.1e-27  Score=217.50  Aligned_cols=155  Identities=47%  Similarity=0.848  Sum_probs=142.6

Q ss_pred             hhhhhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHH
Q psy8709         111 KYYFNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYK  190 (319)
Q Consensus       111 ~~yf~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~  190 (319)
                      +.||++|+++.+|+.|++|..|+..|.++|..+...+++                                         
T Consensus         1 d~yf~~y~~~~~h~~ml~D~~r~~~y~~aI~~~~~~~~~-----------------------------------------   39 (328)
T d1g6q1_           1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKD-----------------------------------------   39 (328)
T ss_dssp             CCCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTT-----------------------------------------
T ss_pred             CCcchhhcCchHHHHHhCCHHHHHHHHHHHHhccccCCc-----------------------------------------
Confidence            369999999999999999999999999998776655555                                         


Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCcee
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVD  270 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD  270 (319)
                                  ++|||+|||+|.+++.+++.|+.+|+|+|.|+++..|+++.+.++..++++++++++.+++++.++||
T Consensus        40 ------------~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D  107 (328)
T d1g6q1_          40 ------------KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVD  107 (328)
T ss_dssp             ------------CEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEE
T ss_pred             ------------CEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCccccee
Confidence                        78889999999999989998888999999999778899999999998999999999999999889999


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                      +|+++++++++.++..+..++.++.++|||||+++|+.++++++|+..
T Consensus       108 ~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~  155 (328)
T d1g6q1_         108 IIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLED  155 (328)
T ss_dssp             EEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred             EEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccC
Confidence            999999999999999999999999999999999999999999999864

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.7e-26  Score=206.64  Aligned_cols=152  Identities=53%  Similarity=0.890  Sum_probs=137.4

Q ss_pred             hhhccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHH
Q psy8709         114 FNSYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAI  193 (319)
Q Consensus       114 f~~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i  193 (319)
                      |++|+++++|+.|++|..|+..|.++|..+...+++                                            
T Consensus         1 ~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~--------------------------------------------   36 (311)
T d2fyta1           1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKD--------------------------------------------   36 (311)
T ss_dssp             CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTT--------------------------------------------
T ss_pred             CCCcccchHHHHHhCCHHHHHHHHHHHHhccccCCc--------------------------------------------
Confidence            788999999999999999999999999888777676                                            


Q ss_pred             hcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEE
Q psy8709         194 LNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIII  273 (319)
Q Consensus       194 ~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Ii  273 (319)
                               ++|||||||+|.+++.+++.|+.+|+|+|.|+....+.+....++..++++++++++.+++.+.++||+|+
T Consensus        37 ---------~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Iv  107 (311)
T d2fyta1          37 ---------KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVII  107 (311)
T ss_dssp             ---------CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred             ---------CEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEE
Confidence                     68888888888888888888888999999999334577777888888999999999999998888999999


Q ss_pred             eccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         274 SEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       274 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                      ++++++++..+..++.++..+.++|||||+++|+.+++++.|+..
T Consensus       108 se~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v~~  152 (311)
T d2fyta1         108 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSD  152 (311)
T ss_dssp             ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred             EeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEecC
Confidence            999999999988999999999999999999999999999998853

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=3e-26  Score=210.57  Aligned_cols=150  Identities=49%  Similarity=0.840  Sum_probs=136.3

Q ss_pred             hccchhhhhhhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhc
Q psy8709         116 SYEDAHIHAEMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILN  195 (319)
Q Consensus       116 ~y~~~~~~~~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~  195 (319)
                      ||+++++|+.|++|.+|+..|.++|..|...+++                                              
T Consensus         1 ~y~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~----------------------------------------------   34 (316)
T d1oria_           1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKD----------------------------------------------   34 (316)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTT----------------------------------------------
T ss_pred             CCccchHHHHHhCCHHHHHHHHHHHHhccccCCc----------------------------------------------
Confidence            5899999999999999999999999877665555                                              


Q ss_pred             ccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         196 NKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                             ++|||+|||+|.+++.+++.|+.+|+|+|.|++...+.++++.+++.++++++++++.+++++.++||+|+++
T Consensus        35 -------~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~  107 (316)
T d1oria_          35 -------KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISE  107 (316)
T ss_dssp             -------CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred             -------CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeee
Confidence                   7888888999988888888888899999999955677888899999899999999999999888999999999


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceeecccc
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLCGAYA  318 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~~~~~  318 (319)
                      ++++++.++..++.++..+.++|||||.++|+.+++|++|+..
T Consensus       108 ~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~  150 (316)
T d1oria_         108 WMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIED  150 (316)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred             eeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecC
Confidence            9999999999999999999999999999999999999999853

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=3.4e-20  Score=162.13  Aligned_cols=114  Identities=15%  Similarity=0.254  Sum_probs=103.0

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      ..+.+++..++.++.+|||+|||+|.++..+++.+. +|+|+|+|+ |++.|++++..+++ +++.++++|+++++++++
T Consensus         4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~   81 (234)
T d1xxla_           4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDD   81 (234)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTT
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccc-cccccccccccccccccc
Confidence            345677788899999999999999999999999864 999999999 99999999999888 689999999999999999


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +||+|+|..+.+++   .++..+++++.++|||||++++.
T Consensus        82 ~fD~v~~~~~l~~~---~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          82 SFDIITCRYAAHHF---SDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             CEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceeeeeceeecc---cCHHHHHHHHHHeeCCCcEEEEE
Confidence            99999998887765   56789999999999999998875

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.80  E-value=5.9e-20  Score=159.65  Aligned_cols=112  Identities=21%  Similarity=0.211  Sum_probs=99.9

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCcee
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVD  270 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD  270 (319)
                      .+++..++.++.+|||||||+|.++..+++.+. +|+|+|+|+ |++.|++++...+. ++++++++|+++++++.++||
T Consensus         6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccc-ccccccccccccccccccccc
Confidence            456667888889999999999999999999875 999999999 99999999998887 789999999999998889999


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +|+|..+.+++   .++..++++++++|||||++++..
T Consensus        84 ~v~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          84 IVTCRIAAHHF---PNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccccc---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence            99998887776   567899999999999999999754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=9.4e-20  Score=160.47  Aligned_cols=123  Identities=13%  Similarity=0.099  Sum_probs=107.8

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      +.+....+.+...+.+.++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++....|+.++++++.+|+.++
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            445667778889999999999999999999999999885335999999999 9999999999999988999999999987


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                       .++++||+|+|..+.+++   .++..++++++++|||||+++++...
T Consensus        96 -~~~~~fD~v~~~~~~~~~---~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_          96 -VANEKCDVAACVGATWIA---GGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             -CCSSCEEEEEEESCGGGT---SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             -cccCceeEEEEEehhhcc---CCHHHHHHHHHHHcCcCcEEEEEecc
Confidence             456899999998877766   46788999999999999999987543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.79  E-value=2.2e-19  Score=161.36  Aligned_cols=120  Identities=18%  Similarity=0.110  Sum_probs=105.3

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      +.+.+.+....++.++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++....|+.++++++++|+.+++++
T Consensus        53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~  132 (282)
T d2o57a1          53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE  132 (282)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccccc
Confidence            445566666678889999999999999999999886334999999999 9999999999999988999999999999999


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .++||+|++..+++++   +++..+++++.++|||||++++...
T Consensus       133 ~~sfD~V~~~~~l~h~---~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         133 DNSYDFIWSQDAFLHS---PDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             TTCEEEEEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchhhccchhhhc---cCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            8999999998877666   5678899999999999999997643

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=4.3e-19  Score=156.02  Aligned_cols=119  Identities=16%  Similarity=0.249  Sum_probs=99.2

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      +...++......++++|||+|||+|.++..+++.|. +|+|+|+|+ |++.|++++..++.  +++++++|+++++++ +
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~-~  104 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-N  104 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-S
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--cchheehhhhhcccc-c
Confidence            344455555666778999999999999999999976 999999999 99999999988776  799999999999887 6


Q ss_pred             ceeEEEecc-chhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         268 SVDIIISEW-MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       268 ~fD~Iis~~-~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      +||+|+|.. ++++ .+.+++..+|++++++|||||+++++..+++
T Consensus       105 ~fD~I~~~~~~~~~-~~~~~~~~~L~~~~~~LkpgG~lii~~~~~~  149 (251)
T d1wzna1         105 EFDAVTMFFSTIMY-FDEEDLRKLFSKVAEALKPGGVFITDFPCWF  149 (251)
T ss_dssp             CEEEEEECSSGGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEC--
T ss_pred             ccchHhhhhhhhhc-CChHHHHHHHHHHHHHcCCCcEEEEEeccch
Confidence            899999864 4444 4556788999999999999999999876543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=1.3e-18  Score=150.01  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=94.4

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+ |++.|+++....+.  ++.++.+|+.+++++.++||+|+|..+.
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~~~~fD~I~~~~~l  112 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDKTFDYVIFIDSI  112 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc--cccccccccccccccCcCceEEEEecch
Confidence            3567999999999999999999865 999999999 99999999887764  6788999999999988999999998888


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +++.. .++..+++++.++|||||++++...+
T Consensus       113 ~~~~~-~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         113 VHFEP-LELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             GGCCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhCCh-hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            87643 56788999999999999999987655

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.74  E-value=2.2e-18  Score=151.48  Aligned_cols=108  Identities=15%  Similarity=0.174  Sum_probs=93.7

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec-cc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE-WM  277 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~-~~  277 (319)
                      .++++|||+|||+|.++..+++.|. +|+|+|+|+ |++.|+++....+.  +++++++|+.+++++ ++||+|+|. .+
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~i~~~~~~  111 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDS  111 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTG
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc--cceeeccchhhhccc-ccccccceeeee
Confidence            3457899999999999999999976 999999999 99999999888776  799999999998765 789999984 45


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .+++.+..++..++++++++|||||.|+++..+.
T Consensus       112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  145 (246)
T d1y8ca_         112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             eeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence            5666677889999999999999999999865543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=3.1e-18  Score=144.75  Aligned_cols=121  Identities=17%  Similarity=0.214  Sum_probs=107.1

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ++.++++..++..+.+.++.+|||+|||+|.+++.+++.+ .+|+|+|+++ +++.|+++++.+++.++++++++|+.+.
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~   94 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA   94 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc
Confidence            5678999999999999999999999999999999999874 5999999999 9999999999999988999999999888


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ..+.+.||.|+++...+      ....++..+.+.|||||++++...+.
T Consensus        95 ~~~~~~~D~v~~~~~~~------~~~~~~~~~~~~LkpgG~lvi~~~~~  137 (186)
T d1l3ia_          95 LCKIPDIDIAVVGGSGG------ELQEILRIIKDKLKPGGRIIVTAILL  137 (186)
T ss_dssp             HTTSCCEEEEEESCCTT------CHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             ccccCCcCEEEEeCccc------cchHHHHHHHHHhCcCCEEEEEeecc
Confidence            77778999999876532      34678999999999999998876543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.74  E-value=6.2e-18  Score=149.41  Aligned_cols=111  Identities=15%  Similarity=0.133  Sum_probs=96.3

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccccc-CCCceeEEEecc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVEL-PVESVDIIISEW  276 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~-~~~~fD~Iis~~  276 (319)
                      ..++.+|||+|||+|..+..+++.+.++|+|+|+|+ |++.|+++....+...++.++++|+...++ ..++||+|+|..
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            456789999999999999999998888999999999 999999999888777799999999976654 357899999988


Q ss_pred             chhhh-cchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         277 MGYFL-LFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       277 ~~~~l-~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +.|+. ..+..+..++.++.++|||||+|+++..
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            77665 4567789999999999999999997654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.3e-18  Score=147.00  Aligned_cols=110  Identities=15%  Similarity=0.182  Sum_probs=94.4

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      ....++.+|||+|||+|.++..++..+..+|+|+|+|+ |++.|++++...+. .+++++++|+++++++.++||+|++.
T Consensus        56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~  134 (222)
T d2ex4a1          56 PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQ  134 (222)
T ss_dssp             --CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             cCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-cccccccccccccccccccccccccc
Confidence            44566689999999999999988776667999999999 99999999887766 67899999999998888999999998


Q ss_pred             cchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         276 WMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       276 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .+.+++.. +.+..++++++++|||||.+++..
T Consensus       135 ~~l~h~~~-~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         135 WVIGHLTD-QHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             SCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchh-hhhhhHHHHHHHhcCCcceEEEEE
Confidence            88887644 456789999999999999999764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.70  E-value=4.2e-17  Score=138.75  Aligned_cols=107  Identities=21%  Similarity=0.230  Sum_probs=93.5

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      ..++.+|||+|||+|..+..+++.|. +|+|+|+|+ +++.++++....++ +++++...|+.+..++ ++||+|++..+
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~-~~fD~I~~~~~  104 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFD-GEYDFILSTVV  104 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCC-CCEEEEEEESC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccc-cchhhhheeccccccc-ccccEEEEeee
Confidence            33446999999999999999999977 999999999 99999999998888 6899999999988764 78999999888


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ++++.. .....+++++.++|+|||++++...
T Consensus       105 ~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         105 MMFLEA-QTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             GGGSCT-THHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eecCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            887644 5678999999999999999987543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=5e-17  Score=145.97  Aligned_cols=122  Identities=16%  Similarity=0.092  Sum_probs=105.6

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ...+..+.+++.+.+.++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++..++..++.+...|..+++
T Consensus        36 AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~  115 (280)
T d2fk8a1          36 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA  115 (280)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc
Confidence            34667888999999999999999999999999999886334999999999 99999999999999888999888876543


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                         ++||.|++..++.++.. .....+++++.++|||||++++++.+
T Consensus       116 ---~~fD~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         116 ---EPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             ---CCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ---cchhhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEEee
Confidence               68999999988877644 56789999999999999999987643

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.69  E-value=7.5e-17  Score=136.95  Aligned_cols=115  Identities=17%  Similarity=0.219  Sum_probs=97.0

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCccccccCCC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~~~~~~  267 (319)
                      .+.+++.+...++++|||+|||+|.++..+++.+ .+|+++|+|+ +++.++++++.+++. .+++++.+|+.+ .++++
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~  118 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDR  118 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTS
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccC
Confidence            3456667778888999999999999999998875 4999999999 999999999998875 369999999977 45668


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +||+|++++++|..  ......+++.+.++|+|||.+++..
T Consensus       119 ~fD~Ii~~~p~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~  157 (194)
T d1dusa_         119 KYNKIITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             CEEEEEECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceEEEEcccEEec--chhhhhHHHHHHHhcCcCcEEEEEE
Confidence            99999999987642  3456789999999999999987643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.68  E-value=7.5e-17  Score=139.80  Aligned_cols=109  Identities=17%  Similarity=0.256  Sum_probs=93.0

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEe
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA---GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIIS  274 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis  274 (319)
                      ..++.+|||+|||+|..+..+++.   +..+|+|+|+|+ |++.|+++++..+...++++..+|+.+.+  .+.+|+|++
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~  114 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVIL  114 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEE
Confidence            346689999999999999999873   456999999999 99999999998887788999999987654  468999999


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ....+++ +.++..++|+++++.|||||.+++...+
T Consensus       115 ~~~l~~~-~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         115 NFTLQFL-PPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             ESCGGGS-CGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eeecccc-ChhhHHHHHHHHHHhCCCCceeeccccc
Confidence            8888775 4467789999999999999999987544

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=2.5e-17  Score=143.56  Aligned_cols=100  Identities=22%  Similarity=0.319  Sum_probs=83.9

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec-cch
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE-WMG  278 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~-~~~  278 (319)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|+++.    .   ..++.++++++++++++||+|+|. .+.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~~~~~  113 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPSGAFEAVLALGDVL  113 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCTTCEEEEEECSSHH
T ss_pred             CCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccc----c---cccccccccccccccccccceeeecchh
Confidence            457999999999999999999876 999999999 998887642    2   136789999999988999999985 466


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +++   .++..+|+++.++|||||+++++..+.
T Consensus       114 ~~~---~d~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         114 SYV---ENKDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             HHC---SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             hhh---hhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence            665   566789999999999999999886543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=1.9e-16  Score=142.76  Aligned_cols=124  Identities=17%  Similarity=0.072  Sum_probs=106.4

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      ....+..+.+++.+.+.+|.+|||||||+|.++..+++ .|+ +|+|+++|+ .++.+++.+...++.+++++...|.. 
T Consensus        44 ~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~-  121 (291)
T d1kpia_          44 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-  121 (291)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG-
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc-
Confidence            34477788899999999999999999999999999887 465 999999999 99999999999999889999888864 


Q ss_pred             cccCCCceeEEEeccchhhhcc------hhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         262 VELPVESVDIIISEWMGYFLLF------ETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~------~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                        .++++||.|+|..++.++..      ...++.+++++.++|||||++++++.++
T Consensus       122 --~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         122 --EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             --GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred             --ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence              34578999999888766543      2467899999999999999999887653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.67  E-value=4.8e-17  Score=136.78  Aligned_cols=115  Identities=9%  Similarity=-0.010  Sum_probs=93.7

Q ss_pred             HhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC-----------CCcEEEEEcCcc
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY-----------DSQIEVYHKLLE  260 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~-----------~~~i~~i~~d~~  260 (319)
                      ....+...++.+|||+|||+|..+..+++.|. +|+|+|+|+ |++.|+++++..+.           ...++++.+|+.
T Consensus        12 ~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          12 YWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            34556788899999999999999999999987 999999999 99999988865432           134578888887


Q ss_pred             cccc-CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         261 DVEL-PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       261 ~~~~-~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +++. +...||+|++..+++++.. .....+++.+.++|||||.+++...
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~~~  139 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLITL  139 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             ccccccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEEEc
Confidence            7653 3468999999888877544 5678899999999999999876543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.67  E-value=8.6e-17  Score=142.43  Aligned_cols=115  Identities=16%  Similarity=0.197  Sum_probs=96.5

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      .+.++..+...+..+|||+|||+|.++..++..+..+|+++|+|+ |++.|+++....   .+++++++++++++++.++
T Consensus        82 s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~  158 (254)
T d1xtpa_          82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNT  158 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSC
T ss_pred             HHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCc
Confidence            345555666677789999999999999988775566999999999 999998776433   5689999999999888889


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ||+|++.++++++.. .++..+|+++++.|+|||++++..
T Consensus       159 fD~I~~~~vl~hl~d-~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         159 YDLIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceEEeeccccccch-hhhHHHHHHHHHhcCCCcEEEEEe
Confidence            999999999888644 456789999999999999999754

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=2.6e-16  Score=141.42  Aligned_cols=122  Identities=20%  Similarity=0.175  Sum_probs=107.1

Q ss_pred             ccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         184 IRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       184 ~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      ....+..+.+...+.+.+|.+|||||||+|.++..+++ .|+ +|+|+++|+ .++.|++++...|+.+++++..+|..+
T Consensus        45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (285)
T d1kpga_          45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ  123 (285)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc
Confidence            34477789999999999999999999999999999888 464 999999999 999999999999999999999999876


Q ss_pred             cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++   ++||.|++..++.++.+ .....+++++.++|||||++++.+.+
T Consensus       124 ~~---~~fD~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         124 FD---EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             CC---CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             cc---ccccceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            54   68999999888776644 55678999999999999999987765

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.64  E-value=3.6e-16  Score=140.29  Aligned_cols=117  Identities=20%  Similarity=0.289  Sum_probs=97.1

Q ss_pred             HHHHHHHhccc-ccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         187 ESYKSAILNNK-SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       187 ~~~~~~i~~~l-~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      +.+.+++.+.+ ...++.+|||+|||+|.++..+++. + ..+|+|+|+|+ +++.|+++....+.  +++++++|+.++
T Consensus        12 ~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~   89 (281)
T d2gh1a1          12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI   89 (281)
T ss_dssp             HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTC
T ss_pred             HHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccc
Confidence            34455555543 4566789999999999999999884 3 35899999999 99999999988765  799999999998


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +++ ++||+|+|..+++++   +++..+++++.+.|||||.+++...
T Consensus        90 ~~~-~~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          90 ELN-DKYDIAICHAFLLHM---TTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             CCS-SCEEEEEEESCGGGC---SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccc-CCceEEEEehhhhcC---CCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            876 689999999887776   5677899999999999999987554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=2.9e-16  Score=138.80  Aligned_cols=115  Identities=18%  Similarity=0.282  Sum_probs=93.1

Q ss_pred             CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      ..++++-+.+.+....  .++++|||+|||+|.+++.+++.|. +|+|+|+|+ +++.|+++++.+++  +++++++|+.
T Consensus       103 ~H~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~  177 (254)
T d2nxca1         103 HHETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLE  177 (254)
T ss_dssp             CSHHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHH
T ss_pred             ccchhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC--ceeEEecccc
Confidence            3445555556655443  4678999999999999999999875 899999999 99999999999998  4678899987


Q ss_pred             ccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         261 DVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       261 ~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +. ++.++||+|+++...      ..+..++..+.++|||||+++++.
T Consensus       178 ~~-~~~~~fD~V~ani~~------~~l~~l~~~~~~~LkpGG~lilSg  218 (254)
T d2nxca1         178 AA-LPFGPFDLLVANLYA------ELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             HH-GGGCCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cc-ccccccchhhhcccc------ccHHHHHHHHHHhcCCCcEEEEEe
Confidence            64 455799999997643      345678889999999999999763

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.62  E-value=3.7e-16  Score=135.48  Aligned_cols=102  Identities=16%  Similarity=0.189  Sum_probs=86.3

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      ..++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.|+++.     .+++.++.+++++++++ ++||+|++..+
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~~-~~fD~I~~~~v   90 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQLP-RRYDNIVLTHV   90 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCCS-SCEEEEEEESC
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccc-----ccccccccccccccccc-cccccccccce
Confidence            34567999999999999999998876 899999999 999887653     24799999999988765 79999999888


Q ss_pred             hhhhcchhhHHHHHHHHh-cccCCCcEEEeecCc
Q psy8709         278 GYFLLFETMIDSVIDARN-RFLKPDGVVCPNRFT  310 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~-r~LkpgG~li~~~~t  310 (319)
                      ++++   .++..++.++. ++|+|||.++++.++
T Consensus        91 leh~---~d~~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          91 LEHI---DDPVALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             GGGC---SSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             eEec---CCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence            7766   56778888887 899999999987643

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1e-15  Score=133.03  Aligned_cols=122  Identities=13%  Similarity=-0.026  Sum_probs=97.9

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcC----------------CC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNK----------------YD  249 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g----------------~~  249 (319)
                      ..+.+.+...+...++.+|||+|||+|..+..+++.|. +|+|||+|+ +++.|++.....+                ..
T Consensus        31 ~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (229)
T d2bzga1          31 QLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSS  109 (229)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecC
Confidence            34455555556677888999999999999999999988 999999999 9998887654321                12


Q ss_pred             CcEEEEEcCccccc-cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         250 SQIEVYHKLLEDVE-LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       250 ~~i~~i~~d~~~~~-~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .+++++++|+.+++ ...+.||+|+...+++++.. +....+++++.++|||||++++.+..
T Consensus       110 ~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         110 GNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             SSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             CcEEEEEcchhhccccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            57899999998875 44578999999888777654 66789999999999999998866544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.60  E-value=8.8e-16  Score=125.42  Aligned_cols=115  Identities=23%  Similarity=0.200  Sum_probs=92.6

Q ss_pred             HHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-ccCCCc
Q psy8709         192 AILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-ELPVES  268 (319)
Q Consensus       192 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~~~~~~  268 (319)
                      .+.+.++ ..++.+|||+|||+|.+++.++.+|+.+|+++|.++ +++.+++++..++..++++++++|+... +...++
T Consensus         4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~   83 (152)
T d2esra1           4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR   83 (152)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred             HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccc
Confidence            3444433 246789999999999999999999999999999999 9999999999999988999999998774 345689


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHH--hcccCCCcEEEeecCc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDAR--NRFLKPDGVVCPNRFT  310 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~--~r~LkpgG~li~~~~t  310 (319)
                      ||+|+++||+..    ......+..+  .++|+|||.+++++..
T Consensus        84 fDiIf~DPPy~~----~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          84 FDLVFLDPPYAK----ETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             EEEEEECCSSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             cceeEechhhcc----chHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            999999998653    2333444433  4689999999987654

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.60  E-value=7e-16  Score=129.77  Aligned_cols=140  Identities=20%  Similarity=0.175  Sum_probs=115.8

Q ss_pred             HHhcCCceEEeeecCCCcccHHHHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHH
Q psy8709         166 AAQAGAAKVFAIEKSGTPIRTESYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDII  243 (319)
Q Consensus       166 aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~  243 (319)
                      +++++.+.+..++...++++++.+++.+++.+. ...+.+|||++||+|.++..++.+|+.+|+++|.++ +++.+++++
T Consensus         5 ~G~~kg~~l~~~~~~~~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~   84 (182)
T d2fhpa1           5 SGEYGGRRLKALDGDNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENI   84 (182)
T ss_dssp             SSTTTTCBCCCCCCCSSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH
T ss_pred             ccccCCCEecCCCCCCcCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHh
Confidence            345667788777878899999999999999876 457889999999999999999999999999999999 999999999


Q ss_pred             HhcCCCCcEEEEEcCccccc----cCCCceeEEEeccchhhhcchhhHHHHHHHH--hcccCCCcEEEeecC
Q psy8709         244 RKNKYDSQIEVYHKLLEDVE----LPVESVDIIISEWMGYFLLFETMIDSVIDAR--NRFLKPDGVVCPNRF  309 (319)
Q Consensus       244 ~~~g~~~~i~~i~~d~~~~~----~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~--~r~LkpgG~li~~~~  309 (319)
                      +..+..++++++++|+...-    ....+||+|+++||+..    ......+..+  ..+|+|+|++++++.
T Consensus        85 ~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~----~~~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1          85 AITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAK----QEIVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             HHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hhhhcccccccccccchhhhhhhcccCCCcceEEechhhhh----hHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            98888789999999987641    23468999999999643    2334455554  358999999998654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=9.5e-16  Score=129.06  Aligned_cols=142  Identities=15%  Similarity=0.138  Sum_probs=112.0

Q ss_pred             hHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccc-cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHH
Q psy8709         163 SIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETI  240 (319)
Q Consensus       163 ~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~  240 (319)
                      -+.+++++.+.+..++....+++++.+++.+++.+. ...+.+|||++||+|.+++.++.+|+.+|+.||.++ .++.++
T Consensus         4 rIi~G~~kg~~l~~~~~~~~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k   83 (183)
T d2fpoa1           4 RIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLI   83 (183)
T ss_dssp             ECCSGGGTTCEEECCCC------CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred             EEEecccCCCEecCCCCCCcCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHH
Confidence            345667888999999888899999999999998875 357789999999999999999999999999999999 999999


Q ss_pred             HHHHhcCCCCcEEEEEcCcccc-ccCCCceeEEEeccchhhhcchhhHHHHHHHHh--cccCCCcEEEeecC
Q psy8709         241 DIIRKNKYDSQIEVYHKLLEDV-ELPVESVDIIISEWMGYFLLFETMIDSVIDARN--RFLKPDGVVCPNRF  309 (319)
Q Consensus       241 ~~~~~~g~~~~i~~i~~d~~~~-~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~  309 (319)
                      +++...+. .++.++.+|+... .....+||+|++++|+..    .....++..+.  .+|+|+|++++++.
T Consensus        84 ~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~----~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1          84 KNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR----GLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             HHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSSST----TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             HHHhhccc-cceeeeeecccccccccccccCEEEEcCcccc----chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            99998877 6789999998765 234578999999998543    23444444443  57999999998653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2.2e-15  Score=135.53  Aligned_cols=124  Identities=17%  Similarity=0.196  Sum_probs=93.9

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC---CcEEEEEcCccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD---SQIEVYHKLLED  261 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~---~~i~~i~~d~~~  261 (319)
                      .+...+++...++..++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|+++....+..   ....+...++..
T Consensus        41 ~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          41 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            345566677777777778999999999999999999976 999999999 999999988776542   233455555543


Q ss_pred             cc---cCCCceeEEEecc-chhhhcc----hhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         262 VE---LPVESVDIIISEW-MGYFLLF----ETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       262 ~~---~~~~~fD~Iis~~-~~~~l~~----~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ..   .+.++||.|+|.+ .+.++..    ..+...+|+++.++|||||+|+++..+
T Consensus       120 ~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             HHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            32   2347899999743 4444432    356788999999999999999997643

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=8.7e-16  Score=131.01  Aligned_cols=96  Identities=19%  Similarity=0.216  Sum_probs=81.5

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccch
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMG  278 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~  278 (319)
                      .++.+|||||||+|.++..+.     +++|+|+|+ +++.+++        .++.++++|++++++++++||+|+|..+.
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~--------~~~~~~~~d~~~l~~~~~~fD~I~~~~~l  101 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARK--------RGVFVLKGTAENLPLKDESFDFALMVTTI  101 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHH--------TTCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhcccccc--------ccccccccccccccccccccccccccccc
Confidence            345689999999999887763     578999999 8888765        25789999999999988999999998887


Q ss_pred             hhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         279 YFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       279 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +++   +++..+++++.++|+|||.+++.....
T Consensus       102 ~h~---~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_         102 CFV---DDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             GGS---SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccc---cccccchhhhhhcCCCCceEEEEecCC
Confidence            776   567899999999999999999876543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.57  E-value=1.5e-14  Score=127.44  Aligned_cols=115  Identities=17%  Similarity=0.190  Sum_probs=94.8

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCcee
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVD  270 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD  270 (319)
                      .+...++....++|||||||+|.++..+++. +..+++++|++++++.+++++...++.++++++.+|+.+. .+ .+||
T Consensus        71 ~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~-~~~D  148 (253)
T d1tw3a2          71 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP-RKAD  148 (253)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS-SCEE
T ss_pred             HHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-cc-cchh
Confidence            4445556666789999999999999999985 5569999998559999999999999989999999998763 33 5799


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +|++..+.|++.. +...++|+++++.|||||++++...
T Consensus       149 ~v~~~~vlh~~~d-~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         149 AIILSFVLLNWPD-HDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             EEEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             heeeccccccCCc-hhhHHHHHHHHHhcCCCcEEEEEec
Confidence            9999888776533 4567899999999999999987544

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.57  E-value=3.5e-15  Score=131.37  Aligned_cols=111  Identities=15%  Similarity=0.204  Sum_probs=91.1

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCc
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      .++..+.+.+|.+|||+|||+|.++..+++.  +.++|+++|.++ +++.|+++++..+...++++..+|+.+. ++++.
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~  154 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQM  154 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCC
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccce
Confidence            5677788999999999999999999999984  456999999999 9999999999887778999999999876 45688


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      ||.|+++.+.        +..++..+.+.|||||++++..+++
T Consensus       155 fD~V~ld~p~--------p~~~l~~~~~~LKpGG~lv~~~P~i  189 (250)
T d1yb2a1         155 YDAVIADIPD--------PWNHVQKIASMMKPGSVATFYLPNF  189 (250)
T ss_dssp             EEEEEECCSC--------GGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             eeeeeecCCc--------hHHHHHHHHHhcCCCceEEEEeCCc
Confidence            9999986542        2356888999999999999765553

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.4e-15  Score=129.13  Aligned_cols=107  Identities=22%  Similarity=0.244  Sum_probs=87.3

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEecc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIISEW  276 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis~~  276 (319)
                      .++++|||||||+|..+..+++.+..+|+|||+|+ +++.|+++....+  .++.++.+++...  .++.++||.|+.+.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD~  129 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT  129 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeecc
Confidence            46789999999999999999997666999999999 9999999877655  4788888887654  46678999998654


Q ss_pred             c--hhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         277 M--GYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       277 ~--~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .  .+.+.+..+...++++++|+|||||+|++..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            2  3334455678889999999999999998643

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=1e-14  Score=125.62  Aligned_cols=110  Identities=16%  Similarity=0.072  Sum_probs=91.9

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ..+...+++.+.+.++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|+++++..+. .++.++.+|..+..
T Consensus        61 P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~  139 (213)
T d1dl5a1          61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCC
T ss_pred             chhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHcc
Confidence            456667788889999999999999999999999884 3 45899999999 99999999999888 78999999998876


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ...++||+|++....+.+     +    .++.+.|||||++++
T Consensus       140 ~~~~~fD~I~~~~~~~~~-----p----~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         140 PEFSPYDVIFVTVGVDEV-----P----ETWFTQLKEGGRVIV  173 (213)
T ss_dssp             GGGCCEEEEEECSBBSCC-----C----HHHHHHEEEEEEEEE
T ss_pred             ccccchhhhhhhccHHHh-----H----HHHHHhcCCCcEEEE
Confidence            666789999998765433     1    234567999999986

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2.6e-14  Score=127.32  Aligned_cols=126  Identities=15%  Similarity=0.118  Sum_probs=102.3

Q ss_pred             CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc
Q psy8709         182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL  259 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~  259 (319)
                      .++.++.+.+..+..... ++.+|||+|||+|..+..++. .+..+|+++|+|+ +++.|++|++.+++ .+++++++|+
T Consensus        90 PRpeTE~lv~~~l~~~~~-~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~  167 (274)
T d2b3ta1          90 PRPDTECLVEQALARLPE-QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDW  167 (274)
T ss_dssp             CCTTHHHHHHHHHHHSCS-SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCST
T ss_pred             cccchhhhhhhHhhhhcc-cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeeccc
Confidence            557778888888776543 346899999999999999887 5677999999999 99999999999998 6799999998


Q ss_pred             cccccCCCceeEEEeccchhhh----------cc------------hhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         260 EDVELPVESVDIIISEWMGYFL----------LF------------ETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       260 ~~~~~~~~~fD~Iis~~~~~~l----------~~------------~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .+ +++..+||+|+||+++...          .+            ...+..++..+.++|+|||.+++....
T Consensus       168 ~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~  239 (274)
T d2b3ta1         168 FS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW  239 (274)
T ss_dssp             TG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred             cc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            76 3455799999999986321          01            123677899999999999999987543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=6.5e-15  Score=130.48  Aligned_cols=117  Identities=25%  Similarity=0.296  Sum_probs=98.7

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhc--CCCCcEEEEEcCccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKN--KYDSQIEVYHKLLED  261 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~--g~~~~i~~i~~d~~~  261 (319)
                      ..-...++..+.+.+|.+|||+|||+|.++..+++.  +.++|+++|+++ +++.|+++++..  +..+++.++++|+.+
T Consensus        82 pkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~  161 (264)
T d1i9ga_          82 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  161 (264)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             hHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence            444567788889999999999999999999999995  456999999999 999999998764  445799999999998


Q ss_pred             cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         262 VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       262 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .++++++||.|+.+.+        ++..++.++.++|||||.+++-.+++
T Consensus       162 ~~~~~~~fDaV~ldlp--------~P~~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         162 SELPDGSVDRAVLDML--------APWEVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             CCCCTTCEEEEEEESS--------CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             ccccCCCcceEEEecC--------CHHHHHHHHHhccCCCCEEEEEeCcc
Confidence            8888899999997543        33467888999999999998766554

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=2e-14  Score=131.33  Aligned_cols=126  Identities=19%  Similarity=0.120  Sum_probs=101.9

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc---
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV---  262 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~---  262 (319)
                      .....++.+.+  .++++|||+|||+|.++..++..|+++|+++|+|+ +++.++++++.||+.++++++++|+.+.   
T Consensus       133 r~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~  210 (324)
T d2as0a2         133 RENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEK  210 (324)
T ss_dssp             HHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH
T ss_pred             hhHHHHHHhhc--CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHH
Confidence            44444554433  46789999999999999999999888999999999 9999999999999988999999998764   


Q ss_pred             -ccCCCceeEEEeccchhhhcc------hhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         263 -ELPVESVDIIISEWMGYFLLF------ETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       263 -~~~~~~fD~Iis~~~~~~l~~------~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                       .....+||+|+++++......      ......++..+.++|+|||+|+.++|+..+.
T Consensus       211 ~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~  269 (324)
T d2as0a2         211 LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD  269 (324)
T ss_dssp             HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC
T ss_pred             HHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCC
Confidence             223578999999987543221      2245678899999999999999999987653

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=3.3e-15  Score=124.32  Aligned_cols=138  Identities=10%  Similarity=0.084  Sum_probs=102.8

Q ss_pred             HhcCCceEEeeecCCCcccHHHHHHHHhcccc--cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHH
Q psy8709         167 AQAGAAKVFAIEKSGTPIRTESYKSAILNNKS--LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDII  243 (319)
Q Consensus       167 a~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~  243 (319)
                      +++..+++....  ..+++++.+++.+.+.+.  ..++.+|||+|||+|.++..++..|+ +++++|.++ +++.+++++
T Consensus         7 g~~kg~~l~~~~--~~Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~   83 (171)
T d1ws6a1           7 GKARGVALKVPA--SARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENV   83 (171)
T ss_dssp             GGGTTCEECCCT--TCCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHH
T ss_pred             ccccCCEeCCCC--CCCCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHH
Confidence            456666665543  468888888888877754  35778999999999999999999987 899999999 999999999


Q ss_pred             HhcCCCCcEEEEEcCccc--cccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         244 RKNKYDSQIEVYHKLLED--VELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       244 ~~~g~~~~i~~i~~d~~~--~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +.+++..++....+|...  .....++||+|++++|+.. .....+..++.  ..+|+|||++++++..
T Consensus        84 ~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~-~~~~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1          84 RRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAM-DLAALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             HHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTTS-CTTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             HhhccccceeeeehhcccccccccCCccceeEEcccccc-CHHHHHHHHHH--cCCcCCCeEEEEEecC
Confidence            999986666555554321  1234578999999998653 22233444443  3689999999987643

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.52  E-value=2.2e-14  Score=123.09  Aligned_cols=105  Identities=20%  Similarity=0.192  Sum_probs=85.8

Q ss_pred             ccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCC---Ccee
Q psy8709         196 NKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPV---ESVD  270 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~---~~fD  270 (319)
                      .+++.++.+|||+|||+|..+..+++. +.++|+|+|+|+ |++.++++++..   +++.++.+|+.....+.   ..+|
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~vd  127 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVD  127 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEE
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccccccccceEE
Confidence            467889999999999999999999984 667999999999 999999988775   48999999998765432   4566


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      +|+++.     .+......++.++.++|||||++++..
T Consensus       128 ~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         128 LIYQDI-----AQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEecc-----cChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            666542     233567789999999999999998754

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.7e-14  Score=128.28  Aligned_cols=95  Identities=20%  Similarity=0.213  Sum_probs=79.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      .++.+|||+|||+|.++..+++.+ ...++|+|+|+ +++.|++..      .+++++++|+.++++++++||+|++...
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~  156 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA  156 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEeecCC
Confidence            455799999999999999999863 45999999999 998887642      4789999999999999999999998654


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .++          +.++.|+|||||++++....
T Consensus       157 ~~~----------~~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         157 PCK----------AEELARVVKPGGWVITATPG  179 (268)
T ss_dssp             CCC----------HHHHHHHEEEEEEEEEEEEC
T ss_pred             HHH----------HHHHHHHhCCCcEEEEEeeC
Confidence            322          46788999999999987653

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.50  E-value=3.6e-14  Score=121.25  Aligned_cols=105  Identities=10%  Similarity=0.127  Sum_probs=88.0

Q ss_pred             cceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEEEeccch
Q psy8709         203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDIIISEWMG  278 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~~~~  278 (319)
                      ..|||||||+|..+..+|+. +...++|+|+++ ++..|.+++...++ +|+.++.+|+..+.  ++.+++|.|++..+.
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhcccccccc
Confidence            57999999999999999884 667999999999 99999999999998 69999999998764  677899999987665


Q ss_pred             hhhcchhh-----HHHHHHHHhcccCCCcEEEeec
Q psy8709         279 YFLLFETM-----IDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       279 ~~l~~~~~-----~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .|......     ...++..++++|||||.|++.+
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            55322111     2578999999999999998754

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.47  E-value=1.8e-13  Score=120.79  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=94.8

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCcee
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVD  270 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD  270 (319)
                      .++...+.....+|||||||+|.++..+++. +..+++++|++++++.+++++...+..+++.++.+|..+ +.| ..||
T Consensus        72 ~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D  149 (256)
T d1qzza2          72 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTAD  149 (256)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEE
T ss_pred             HHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccch
Confidence            4444556666689999999999999999985 556999999966889999999999998999999999876 444 4699


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +|++..++|.+. .+....+|+++++.|||||++++...
T Consensus       150 ~v~~~~vLh~~~-d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         150 VVLLSFVLLNWS-DEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             EEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhccccccccC-cHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            999988877653 35567889999999999999886543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=8.9e-14  Score=123.08  Aligned_cols=101  Identities=25%  Similarity=0.222  Sum_probs=85.9

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      ..++.+|||+|||+|.++..+++.|.++|+++|+++ +++.++++++.|++.++++++++|+.++.. .+.||.|+++.+
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p  183 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV  183 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC
Confidence            356899999999999999999998877999999999 999999999999998899999999988754 478999998876


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .+.       ..++..+.+.|+|||.+.+.
T Consensus       184 ~~~-------~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         184 VRT-------HEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             SSG-------GGGHHHHHHHEEEEEEEEEE
T ss_pred             Cch-------HHHHHHHHhhcCCCCEEEEE
Confidence            432       23455667789999998643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.2e-14  Score=124.75  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=83.5

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCc--------------------------
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQ--------------------------  251 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~--------------------------  251 (319)
                      ..++.+|||+|||+|.++..++..+..+|+|+|+|+ +++.|+++++..+....                          
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            345679999999999998888877677899999999 99999999876543210                          


Q ss_pred             --E-EEEEcCc----cccccCCCceeEEEeccchhhhc-chhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         252 --I-EVYHKLL----EDVELPVESVDIIISEWMGYFLL-FETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       252 --i-~~i~~d~----~~~~~~~~~fD~Iis~~~~~~l~-~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                        + .....+.    ...+.+.++||+|++..+.+++. ..+++..+++++.++|||||++++...
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~  194 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  194 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence              0 1111111    11245568999999988877764 345788999999999999999997653

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=4.7e-14  Score=128.51  Aligned_cols=113  Identities=17%  Similarity=0.158  Sum_probs=93.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc----ccCCCceeEEEe
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV----ELPVESVDIIIS  274 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~----~~~~~~fD~Iis  274 (319)
                      .++++|||++||+|.++..++.. ..+|+++|.|+ +++.|+++++.||+ ++++++++|+.+.    ....++||+|++
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            46789999999999999988864 56999999999 99999999999999 6899999998764    234578999999


Q ss_pred             ccchhhhcc------hhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         275 EWMGYFLLF------ETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       275 ~~~~~~l~~------~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                      +++......      ......++..+.++|+|||.++.++|+..+.
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~  267 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT  267 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccC
Confidence            987543221      2345678899999999999999999986543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=6.6e-14  Score=124.32  Aligned_cols=115  Identities=22%  Similarity=0.175  Sum_probs=96.6

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ..-...++..+++.++.+|||+|||+|.++..+++.  +.++|+++|+++ +++.|+++++..++.+++.+..+|+... 
T Consensus        89 pkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-  167 (266)
T d1o54a_          89 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-  167 (266)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-
T ss_pred             hHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-
Confidence            344567788889999999999999999999999985  356999999999 9999999999999888999999997553 


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      ++...||.|+...+        ++..++.++.++|||||.+++..++
T Consensus       168 ~~~~~~D~V~~d~p--------~p~~~l~~~~~~LKpGG~lv~~~P~  206 (266)
T d1o54a_         168 FDEKDVDALFLDVP--------DPWNYIDKCWEALKGGGRFATVCPT  206 (266)
T ss_dssp             CSCCSEEEEEECCS--------CGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             ccccceeeeEecCC--------CHHHHHHHHHhhcCCCCEEEEEeCc
Confidence            45578999986543        3456789999999999999876554

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.45  E-value=1.1e-13  Score=120.21  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=87.4

Q ss_pred             HHHHHHHh---cccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy8709         187 ESYKSAIL---NNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED  261 (319)
Q Consensus       187 ~~~~~~i~---~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~  261 (319)
                      .++...+.   +.+++.++.+|||+|||+|..+..+++. +.+.|+|+|+|+ |++.+.+++...   +++..+.+|...
T Consensus        57 sklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~  133 (230)
T d1g8sa_          57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANK  133 (230)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTC
T ss_pred             cHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeecc
Confidence            34444444   4567889999999999999999999995 456999999999 999998876554   577888888876


Q ss_pred             cc-cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         262 VE-LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       262 ~~-~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .. +....+|++++....   .+......++.++.+.|||||.+++..
T Consensus       134 ~~~~~~~~~~v~~i~~~~---~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         134 PQEYANIVEKVDVIYEDV---AQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             GGGGTTTCCCEEEEEECC---CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccccccceeEEeeccc---cchHHHHHHHHHHHHhcccCceEEEEe
Confidence            54 333455555432222   333677889999999999999988753

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.3e-13  Score=119.46  Aligned_cols=112  Identities=21%  Similarity=0.230  Sum_probs=88.9

Q ss_pred             HHHHHHHhccc--ccCCCcceeeccCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHhcCC----CCcEEEEEc
Q psy8709         187 ESYKSAILNNK--SLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSD-IAYETIDIIRKNKY----DSQIEVYHK  257 (319)
Q Consensus       187 ~~~~~~i~~~l--~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~-~i~~a~~~~~~~g~----~~~i~~i~~  257 (319)
                      ..+...+++.+  ...++.+|||+|||+|+.+..+++. + ..+|+++|.++ +++.|+++++..++    ..++.++.+
T Consensus        60 P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g  139 (224)
T d1i1na_          60 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG  139 (224)
T ss_dssp             HHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred             hHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe
Confidence            34455666665  6688899999999999999999884 3 56999999999 99999999887654    258999999


Q ss_pred             CccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         258 LLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       258 d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      |......+..+||+|++......+         ..++.+.|||||++++-
T Consensus       140 D~~~~~~~~~~fD~I~~~~~~~~i---------p~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         140 DGRMGYAEEAPYDAIHVGAAAPVV---------PQALIDQLKPGGRLILP  180 (224)
T ss_dssp             CGGGCCGGGCCEEEEEECSBBSSC---------CHHHHHTEEEEEEEEEE
T ss_pred             ecccccchhhhhhhhhhhcchhhc---------CHHHHhhcCCCcEEEEE
Confidence            998877777899999987764432         12456789999999863

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=6.6e-14  Score=117.58  Aligned_cols=143  Identities=20%  Similarity=0.186  Sum_probs=106.8

Q ss_pred             HHHHhcCCceEEeeecCCCcccHHHHHHHHhccccc-CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHH
Q psy8709         164 IFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSL-FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETID  241 (319)
Q Consensus       164 i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~  241 (319)
                      +.+++++.+.+..+.....+++++.+++.+++.+.. ..+.+|||+.||||.++..++.+|+.+|+.||.+. .+...++
T Consensus         5 Ii~G~~kg~~l~~~~~~~~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~   84 (183)
T d2ifta1           5 IIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKK   84 (183)
T ss_dssp             CCSSTTTTCEEECC---------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred             EEccccCCCEecCCCCCCcCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhh
Confidence            445577888898888888999999999999999864 47789999999999999999999999999999999 9999999


Q ss_pred             HHHhcCCCC-cEEEEEcCccccc---cCCCceeEEEeccchhhhcchhhHHHHHHHHh--cccCCCcEEEeecCc
Q psy8709         242 IIRKNKYDS-QIEVYHKLLEDVE---LPVESVDIIISEWMGYFLLFETMIDSVIDARN--RFLKPDGVVCPNRFT  310 (319)
Q Consensus       242 ~~~~~g~~~-~i~~i~~d~~~~~---~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~--r~LkpgG~li~~~~t  310 (319)
                      +++..+... ...++..|+.+..   ....+||+|+++||+..    .....++..+.  .+|+++|++++++..
T Consensus        85 Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~----~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1          85 NLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHF----NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             HHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSS----CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             HHhhhcccccccccccccccccccccccCCcccEEEechhHhh----hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            999887643 5777777765432   23457999999999653    33445555553  589999999987543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.44  E-value=2.7e-13  Score=115.71  Aligned_cols=105  Identities=13%  Similarity=0.162  Sum_probs=87.8

Q ss_pred             cceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--cCCCceeEEEeccch
Q psy8709         203 KHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--LPVESVDIIISEWMG  278 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~~~~~fD~Iis~~~~  278 (319)
                      ..|||||||+|.++..+|+. +...++|+|+++ ++..|.+.+...++ .|+.++.+|+.++.  ++..++|.|+++.+.
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhcccccc
Confidence            57999999999999999884 677999999999 99999999999988 78999999998764  677899999987765


Q ss_pred             hhhcchh-----hHHHHHHHHhcccCCCcEEEeec
Q psy8709         279 YFLLFET-----MIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       279 ~~l~~~~-----~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .|.....     ....++..+.++|||||.|++.+
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            5432111     12678999999999999998765

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.43  E-value=1.4e-13  Score=125.25  Aligned_cols=115  Identities=16%  Similarity=0.134  Sum_probs=95.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCcccc----ccCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDV----ELPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~----~~~~~~fD~Ii  273 (319)
                      .++++|||++||+|.++..++..|+.+|+++|+|+ +++.++++++.|++. .+++++.+|+.+.    ....++||+||
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii  222 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  222 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence            35789999999999999999998888999999999 999999999999984 5899999999664    22346899999


Q ss_pred             eccchhhh------cchhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         274 SEWMGYFL------LFETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       274 s~~~~~~l------~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                      ++++.+.-      ........++..+.++|+|||+|++++|+..+.
T Consensus       223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~  269 (317)
T d2b78a2         223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT  269 (317)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred             EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC
Confidence            99874321      112356788999999999999999999986553

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.43  E-value=2.3e-13  Score=117.67  Aligned_cols=107  Identities=15%  Similarity=0.138  Sum_probs=85.6

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+...+++.+.+.++.+|||||||+|+++..+++.+ .+|+++|.++ +++.|+++....   .++.++.+|......+
T Consensus        56 p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~  131 (224)
T d1vbfa_          56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEE  131 (224)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGG
T ss_pred             hhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc---cccccccCchhhcchh
Confidence            4455567788889999999999999999999999975 5999999999 999998876543   6899999998775545


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      .++||.|++......+     +    ..+.+.|||||+|++
T Consensus       132 ~~pfD~Iiv~~a~~~i-----p----~~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         132 EKPYDRVVVWATAPTL-----L----CKPYEQLKEGGIMIL  163 (224)
T ss_dssp             GCCEEEEEESSBBSSC-----C----HHHHHTEEEEEEEEE
T ss_pred             hhhHHHHHhhcchhhh-----h----HHHHHhcCCCCEEEE
Confidence            5789999987654322     1    234568999999986

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.6e-13  Score=125.53  Aligned_cols=117  Identities=14%  Similarity=0.215  Sum_probs=93.4

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhc-------CC-CCcEEEEE
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKN-------KY-DSQIEVYH  256 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~-------g~-~~~i~~i~  256 (319)
                      ......+++.+.+.++.+|||+|||+|.++..+++ .++.+++|||+++ +++.|.+..+..       |. ..++++++
T Consensus       137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~  216 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  216 (328)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence            45667778888899999999999999999998887 4677999999999 999888765542       22 25899999


Q ss_pred             cCccccccCCCc--eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         257 KLLEDVELPVES--VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       257 ~d~~~~~~~~~~--fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +|+.+.++.+..  .|+|+++...+    ...+...+.++.+.|||||+++..
T Consensus       217 gd~~~~~~~~~~~~advi~~~~~~f----~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         217 GDFLSEEWRERIANTSVIFVNNFAF----GPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             CCTTSHHHHHHHHHCSEEEECCTTT----CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             CcccccccccccCcceEEEEcceec----chHHHHHHHHHHHhCCCCcEEEEe
Confidence            999988765433  57888765432    266788899999999999999854

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.4e-13  Score=121.04  Aligned_cols=107  Identities=11%  Similarity=0.117  Sum_probs=80.7

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-----C--CCEEEEEecHH-HHHHHHHHHHhcCCCCcEE--EEEcCcccc------c
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-----G--AAKVFAIEKSD-IAYETIDIIRKNKYDSQIE--VYHKLLEDV------E  263 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-----g--~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~--~i~~d~~~~------~  263 (319)
                      .+..+|||||||+|.++..+++.     +  ..+++|+|+|+ |++.+++.+.......++.  +...++++.      +
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK  118 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence            33448999999999998776552     1  23689999999 9999999886654334444  445554432      3


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .+.++||+|++..+.|++   .++..++++++++|+|||.+++...
T Consensus       119 ~~~~~fD~I~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         119 KELQKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             SSCCCEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCceeEEEEccceecC---CCHHHHHHHHHhhCCCCCEEEEEEe
Confidence            456899999998887776   5678999999999999999987643

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.39  E-value=4.5e-13  Score=115.09  Aligned_cols=111  Identities=15%  Similarity=0.126  Sum_probs=91.4

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+...+++.+.+.++.+|||||||+|+.+..+++.-..+|+++|.++ +++.|+++++..+. +++.++++|......+
T Consensus        64 P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~  142 (215)
T d1jg1a_          64 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPP  142 (215)
T ss_dssp             HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGG
T ss_pred             hhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCcc
Confidence            456667788889999999999999999999999985224899999999 99999999999998 7999999999886666


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ..+||.|++......+     +..    +.+.|+|||+++.-
T Consensus       143 ~~pfD~Iiv~~a~~~i-----p~~----l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         143 KAPYDVIIVTAGAPKI-----PEP----LIEQLKIGGKLIIP  175 (215)
T ss_dssp             GCCEEEEEECSBBSSC-----CHH----HHHTEEEEEEEEEE
T ss_pred             cCcceeEEeecccccC-----CHH----HHHhcCCCCEEEEE
Confidence            6899999987654322     223    34579999999853

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.9e-13  Score=120.67  Aligned_cols=114  Identities=16%  Similarity=0.248  Sum_probs=89.6

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhc----------CCCCcEEEEE
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKN----------KYDSQIEVYH  256 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~----------g~~~~i~~i~  256 (319)
                      ...++..+.+.+|.+|||+|||+|.++..+++.  +.++|+++|+++ +++.|+++++..          +..+++.+.+
T Consensus        87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~  166 (324)
T d2b25a1          87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  166 (324)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence            446777889999999999999999999999984  456999999999 999999998753          3457899999


Q ss_pred             cCccccc--cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         257 KLLEDVE--LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       257 ~d~~~~~--~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +|+.+..  ++...||.|+.+.+.        +..++.++.++|||||+|++-.+++
T Consensus       167 ~di~~~~~~~~~~~fD~V~LD~p~--------P~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         167 KDISGATEDIKSLTFDAVALDMLN--------PHVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             SCTTCCC-------EEEEEECSSS--------TTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             cchhhcccccCCCCcceEeecCcC--------HHHHHHHHHHhccCCCEEEEEeCCH
Confidence            9998763  445789999976542        2346888999999999998655443

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=5.6e-13  Score=115.48  Aligned_cols=114  Identities=22%  Similarity=0.236  Sum_probs=89.4

Q ss_pred             HHHHHHHh---cccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         187 ESYKSAIL---NNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       187 ~~~~~~i~---~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      .++...++   ..+.+.+|.+|||+|||+|.++..+++.  +.++|+|+|+++ +++.++++++..   .++..+..|..
T Consensus        56 SKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~  132 (227)
T d1g8aa_          56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDAT  132 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTT
T ss_pred             cHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECC
Confidence            44445554   4567899999999999999999999995  356999999999 999999887654   46777788775


Q ss_pred             cc---ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         261 DV---ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       261 ~~---~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ..   ......+|+|+++..     +......++.++.+.|||||++++..
T Consensus       133 ~~~~~~~~~~~vD~i~~d~~-----~~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         133 KPEEYRALVPKVDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             CGGGGTTTCCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccccccccceEEEEEEcc-----ccchHHHHHHHHHHhcccCCeEEEEE
Confidence            44   234578999987643     22567789999999999999998753

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=2.7e-12  Score=113.76  Aligned_cols=129  Identities=19%  Similarity=0.137  Sum_probs=100.4

Q ss_pred             CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy8709         182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLE  260 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~  260 (319)
                      .++.++.+.+.+++.....+..+++|+|||+|..+..+++.+..+|+++|+|+ .++.|++|++.++..+++.+..+++.
T Consensus        91 PRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~  170 (271)
T d1nv8a_          91 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL  170 (271)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred             chhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccc
Confidence            56777888888888776666678999999999999999887778999999999 99999999999999889999999987


Q ss_pred             cccc-CCCceeEEEeccchhhh--------cchh---------hHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         261 DVEL-PVESVDIIISEWMGYFL--------LFET---------MIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       261 ~~~~-~~~~fD~Iis~~~~~~l--------~~~~---------~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      +... ..++||+|+||+++---        .+++         .+.-+-+-+.++|+|||.+++....
T Consensus       171 ~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~  238 (271)
T d1nv8a_         171 EPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  238 (271)
T ss_dssp             GGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             cccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence            6532 23689999999985311        0111         1122222245789999999987654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.5e-12  Score=115.18  Aligned_cols=111  Identities=12%  Similarity=0.098  Sum_probs=81.4

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCC--------------------------
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDS--------------------------  250 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~--------------------------  250 (319)
                      ...++.++||+|||+|.++...+.....+|+|+|+|+ |++.+++.++..+..-                          
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            3445789999999999888666655466999999999 9999988775432110                          


Q ss_pred             ---cEEEEEcCcccc------ccCCCceeEEEeccchhhhcc-hhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         251 ---QIEVYHKLLEDV------ELPVESVDIIISEWMGYFLLF-ETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       251 ---~i~~i~~d~~~~------~~~~~~fD~Iis~~~~~~l~~-~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                         ...++..|+...      ..+.++||+|++..+.+++.. ...+..+++++.++|||||+|++..
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~  198 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  198 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence               113344555332      233468999999888877753 3568899999999999999998644

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.30  E-value=2e-12  Score=116.44  Aligned_cols=115  Identities=16%  Similarity=0.107  Sum_probs=91.5

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCC-cEEEEEcCccccc----cCCCceeEE
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDS-QIEVYHKLLEDVE----LPVESVDII  272 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~-~i~~i~~d~~~~~----~~~~~fD~I  272 (319)
                      ..++.+|||++||+|.++..++..|+ +|++||.|+ +++.|++|+..|++.+ +++++++|+.++-    ....+||+|
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            34568999999999999999999887 899999999 9999999999999864 6999999997652    234789999


Q ss_pred             Eeccchhhhc-------chhhHHHHHHHHhcccCCCcE-EEeecCcceee
Q psy8709         273 ISEWMGYFLL-------FETMIDSVIDARNRFLKPDGV-VCPNRFTLSLC  314 (319)
Q Consensus       273 is~~~~~~l~-------~~~~~~~~l~~~~r~LkpgG~-li~~~~t~~~~  314 (319)
                      |++++.+...       .+..+..++..+.++|+|||. ++.+.++..++
T Consensus       209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s  258 (309)
T d2igta1         209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRAS  258 (309)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSC
T ss_pred             EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCC
Confidence            9998854321       134566778888999999986 44555555443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=8.9e-12  Score=105.84  Aligned_cols=81  Identities=27%  Similarity=0.248  Sum_probs=69.6

Q ss_pred             cccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEE
Q psy8709         195 NNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIII  273 (319)
Q Consensus       195 ~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Ii  273 (319)
                      .......|++|||+|||+|.++..++..|+.+|+|+|+++ +++.++++++.++.  +..++.+|+..+.   ++||+|+
T Consensus        40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~~---~~fD~Vi  114 (201)
T d1wy7a1          40 YSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVI  114 (201)
T ss_dssp             HHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEE
T ss_pred             HhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhhC---CcCcEEE
Confidence            3355567889999999999999999999888999999999 99999999988775  6889999987653   6899999


Q ss_pred             eccchhh
Q psy8709         274 SEWMGYF  280 (319)
Q Consensus       274 s~~~~~~  280 (319)
                      +|+++..
T Consensus       115 ~nPP~~~  121 (201)
T d1wy7a1         115 MNPPFGS  121 (201)
T ss_dssp             ECCCCSS
T ss_pred             EcCcccc
Confidence            9998643

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.25  E-value=7.5e-12  Score=105.77  Aligned_cols=74  Identities=19%  Similarity=0.139  Sum_probs=63.0

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEec
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISE  275 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~  275 (319)
                      .....|++|||+|||+|.++..++..|+.+|+|+|+++ +++.|++++      .++.++++|+.+++   ++||+|++|
T Consensus        44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l~---~~fD~Vi~N  114 (197)
T d1ne2a_          44 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEIS---GKYDTWIMN  114 (197)
T ss_dssp             HTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGCC---CCEEEEEEC
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhcC---CcceEEEeC
Confidence            44556899999999999999999999888999999999 888887764      46789999997754   689999999


Q ss_pred             cchh
Q psy8709         276 WMGY  279 (319)
Q Consensus       276 ~~~~  279 (319)
                      +++.
T Consensus       115 PPfg  118 (197)
T d1ne2a_         115 PPFG  118 (197)
T ss_dssp             CCC-
T ss_pred             cccc
Confidence            9864

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=1.1e-11  Score=115.67  Aligned_cols=117  Identities=21%  Similarity=0.235  Sum_probs=86.5

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcC-------C-CCcEEE-E
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNK-------Y-DSQIEV-Y  255 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g-------~-~~~i~~-i  255 (319)
                      ..+...+++.+.+.++.+|||+|||+|.++..++. .|+++++|||+++ +++.|+++.+..+       . ...+.+ .
T Consensus       202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            44566778888999999999999999999999887 4777999999999 9999998776531       1 122333 3


Q ss_pred             EcCcccccc---CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         256 HKLLEDVEL---PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       256 ~~d~~~~~~---~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .++..+.+.   ....+|+|+++..    .+...+...|.++.+.|||||+++..
T Consensus       282 ~~~f~~~~~~d~~~~~adVV~inn~----~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         282 KKSFVDNNRVAELIPQCDVILVNNF----LFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCT----TCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eechhhccccccccccceEEEEecc----cCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            444433221   1246788887643    23367889999999999999999864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=1.4e-11  Score=106.33  Aligned_cols=109  Identities=15%  Similarity=0.116  Sum_probs=83.8

Q ss_pred             HHHHHHhccc--ccCCCcceeeccCCCchHHHHHHHc----C---CCEEEEEecHH-HHHHHHHHHHhc-----CCCCcE
Q psy8709         188 SYKSAILNNK--SLFNNKHVIDVGAGTGILSIFAAQA----G---AAKVFAIEKSD-IAYETIDIIRKN-----KYDSQI  252 (319)
Q Consensus       188 ~~~~~i~~~l--~~~~~~~VLDiGcGtG~ls~~la~~----g---~~~V~gvD~s~-~i~~a~~~~~~~-----g~~~~i  252 (319)
                      .+...+++.+  .+.++.+|||||||+|+.+..+++.    |   ..+|+++|.++ +++.|++++...     +. .++
T Consensus        65 ~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~-~nv  143 (223)
T d1r18a_          65 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-GQL  143 (223)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-TSE
T ss_pred             hhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc-cEE
Confidence            3445566665  6778899999999999999888874    2   24899999999 999998886543     23 589


Q ss_pred             EEEEcCccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         253 EVYHKLLEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       253 ~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      .++.+|..+...+..+||.|++......+     +.    .+.+.|||||++++
T Consensus       144 ~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~-----p~----~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         144 LIVEGDGRKGYPPNAPYNAIHVGAAAPDT-----PT----ELINQLASGGRLIV  188 (223)
T ss_dssp             EEEESCGGGCCGGGCSEEEEEECSCBSSC-----CH----HHHHTEEEEEEEEE
T ss_pred             EEEecccccccccccceeeEEEEeechhc-----hH----HHHHhcCCCcEEEE
Confidence            99999998876666899999987654322     12    34579999999985

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=4.7e-11  Score=102.23  Aligned_cols=115  Identities=13%  Similarity=0.202  Sum_probs=88.0

Q ss_pred             HHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----  263 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----  263 (319)
                      .+...+...+.++|||+|||+|..+..+++.  ..++|+++|.++ +++.|+++++..|+.++++++.||..+.-     
T Consensus        47 lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~  126 (214)
T d2cl5a1          47 IMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK  126 (214)
T ss_dssp             HHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHH
T ss_pred             HHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhh
Confidence            3333344445589999999999999999984  346999999999 99999999999999889999999987641     


Q ss_pred             -cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         264 -LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       264 -~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                       ...++||+|+.+.-...    ......+.+..++|+|||+++++..-
T Consensus       127 ~~~~~~~D~ifiD~~~~~----~~~~~~l~~~~~lLkpGGvIv~Ddvl  170 (214)
T d2cl5a1         127 KYDVDTLDMVFLDHWKDR----YLPDTLLLEKCGLLRKGTVLLADNVI  170 (214)
T ss_dssp             HSCCCCEEEEEECSCGGG----HHHHHHHHHHTTCEEEEEEEEESCCC
T ss_pred             cccccccceeeecccccc----cccHHHHHHHhCccCCCcEEEEeCcC
Confidence             23468999997642111    11223466778999999999987643

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=9.6e-11  Score=102.63  Aligned_cols=105  Identities=13%  Similarity=0.075  Sum_probs=81.3

Q ss_pred             CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc------cCCCceeEE
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE------LPVESVDII  272 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~------~~~~~fD~I  272 (319)
                      +..++||+|||+|..+..++.. +..+++|+|+++ +++.|+++++.+++.+++.+++.+.....      ...++||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            3458999999999999888874 456999999999 99999999999999999999987654432      234689999


Q ss_pred             Eeccchhhhcch--------------------------------hhHHHHHHHHhcccCCCcEEE
Q psy8709         273 ISEWMGYFLLFE--------------------------------TMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       273 is~~~~~~l~~~--------------------------------~~~~~~l~~~~r~LkpgG~li  305 (319)
                      +||++++....+                                ..+.+++++..+++++.|.+.
T Consensus       141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t  205 (250)
T d2h00a1         141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYS  205 (250)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEE
T ss_pred             EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEE
Confidence            999998742100                                125556777778888888874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=1.9e-10  Score=96.72  Aligned_cols=118  Identities=14%  Similarity=0.207  Sum_probs=91.8

Q ss_pred             HHHHHhcccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---
Q psy8709         189 YKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---  263 (319)
Q Consensus       189 ~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---  263 (319)
                      +.+.+++.+...++..+||++||+|..+..+++. +..+|+|+|.++ +++.|+++++..+  +++.++++++.++.   
T Consensus        11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLL   88 (192)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHH
Confidence            3445556667788899999999999999998884 567999999999 9999999887754  58999999987753   


Q ss_pred             --cCCCceeEEEeccch--hhh----cchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         264 --LPVESVDIIISEWMG--YFL----LFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       264 --~~~~~fD~Iis~~~~--~~l----~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                        +..++||.|+.+...  +.+    .........|..+.++|+|||.+++-+
T Consensus        89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence              345799999876321  111    122456788999999999999998543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.4e-10  Score=98.05  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=92.3

Q ss_pred             HHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----
Q psy8709         191 SAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----  263 (319)
Q Consensus       191 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----  263 (319)
                      +.+.......+.++|||+|||+|+-+..+++.  ..++++++|.++ ..+.|+++++..|+.++++++.+++.+..    
T Consensus        49 ~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~  128 (219)
T d2avda1          49 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL  128 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhh
Confidence            33333444455689999999999999999984  356999999999 99999999999999999999999986541    


Q ss_pred             --cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         264 --LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       264 --~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                        ...++||+|+.+.-      .......+..+.++|+|||+++++..-+.
T Consensus       129 ~~~~~~~fD~ifiD~d------k~~y~~~~~~~~~lL~~GGvii~Dn~l~~  173 (219)
T d2avda1         129 AAGEAGTFDVAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWR  173 (219)
T ss_dssp             HTTCTTCEEEEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred             hhcccCCccEEEEeCC------HHHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence              22468999997542      23456677888899999999999877554

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.93  E-value=1e-09  Score=94.43  Aligned_cols=108  Identities=19%  Similarity=0.175  Sum_probs=88.4

Q ss_pred             ccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--c-----CCC
Q psy8709         198 SLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--L-----PVE  267 (319)
Q Consensus       198 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--~-----~~~  267 (319)
                      ...+.++|||+|+++|+-+..+++.  ..++++.+|.++ ..+.|+++++..|+.++++++.+++.+.-  +     ..+
T Consensus        56 ~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~  135 (227)
T d1susa1          56 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG  135 (227)
T ss_dssp             HHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred             HhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCC
Confidence            3344589999999999999999973  356999999999 99999999999999999999999997652  1     246


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      +||+|+.+.-      .......+..+.++|+|||.++++..-+
T Consensus       136 ~fD~iFiDa~------k~~y~~~~e~~~~ll~~gGiii~DNvl~  173 (227)
T d1susa1         136 SYDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNTLW  173 (227)
T ss_dssp             CBSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEETTTG
T ss_pred             ceeEEEeccc------hhhhHHHHHHHHhhcCCCcEEEEccCCC
Confidence            8999997642      1345677888889999999999986643

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.91  E-value=1.8e-09  Score=93.41  Aligned_cols=90  Identities=18%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      +.+.+.+++.+...++.+|||||||+|.+|..+++.+. +|+++|+++ +++.++++....   ++++++++|+.+++++
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~   82 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFP   82 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCC
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhcccc
Confidence            56778888888889999999999999999999999854 999999999 888777655332   6899999999998877


Q ss_pred             CCceeEEEeccchhh
Q psy8709         266 VESVDIIISEWMGYF  280 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~  280 (319)
                      ......|++|.+++-
T Consensus        83 ~~~~~~vv~NLPYnI   97 (235)
T d1qama_          83 KNQSYKIFGNIPYNI   97 (235)
T ss_dssp             SSCCCEEEEECCGGG
T ss_pred             ccccceeeeeehhhh
Confidence            555567889988763

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=1.1e-08  Score=93.62  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=90.5

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE  263 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~  263 (319)
                      ..+.+.+.+.+.+...++.+|||+.||+|.++..+++.+ ++|+|+|.++ +++.|+++++.|++ .+++++.++.++..
T Consensus       196 ~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~~~~~~~~~  273 (358)
T d1uwva2         196 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDV  273 (358)
T ss_dssp             HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCC
T ss_pred             hhhHHHHHHHHhhccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhccc-ccceeeecchhhhh
Confidence            347788888888888888999999999999999999874 5999999999 99999999999999 79999999987642


Q ss_pred             ----cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         264 ----LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       264 ----~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                          ....++|+|+.+++-..+      .+++..+.+ ++|.-++|++.
T Consensus       274 ~~~~~~~~~~d~vilDPPR~G~------~~~~~~l~~-~~~~~ivYVSC  315 (358)
T d1uwva2         274 TKQPWAKNGFDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYVSC  315 (358)
T ss_dssp             SSSGGGTTCCSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEEES
T ss_pred             hhhhhhhccCceEEeCCCCccH------HHHHHHHHH-cCCCEEEEEeC
Confidence                224679999999975443      223444433 35665666653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=3.8e-09  Score=95.55  Aligned_cols=118  Identities=14%  Similarity=0.064  Sum_probs=83.5

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHc------CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA------GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~------g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ...+.......++.+|||.+||+|.+...+.+.      ...+++|+|+++ ++..|+.++..++.  ...+..+|....
T Consensus       106 ~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~  183 (328)
T d2f8la1         106 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLAN  183 (328)
T ss_dssp             HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSC
T ss_pred             HHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhccccccc
Confidence            333333445566779999999999998887642      223799999999 99989888877665  566777776554


Q ss_pred             ccCCCceeEEEeccchhhhcch---------------hhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         263 ELPVESVDIIISEWMGYFLLFE---------------TMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~---------------~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      . +..+||+|++|+|+......               .....++..+.+.|+|||++++-.+.
T Consensus       184 ~-~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         184 L-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             C-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             c-ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence            3 34789999999986422111               11334688899999999987654433

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.80  E-value=2.3e-09  Score=94.92  Aligned_cols=114  Identities=14%  Similarity=0.086  Sum_probs=85.7

Q ss_pred             cCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc---------CCCCcEEEEEcCccccccCCCc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN---------KYDSQIEVYHKLLEDVELPVES  268 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~---------g~~~~i~~i~~d~~~~~~~~~~  268 (319)
                      ..+.++||.+|+|.|..+..+.+.+..+|+.+|+++ +++.|++....+         ...++++++.+|+...--..++
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            345579999999999999998888778999999999 999988765322         2347899999999765334578


Q ss_pred             eeEEEeccchhhhcchhh--HHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         269 VDIIISEWMGYFLLFETM--IDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ||+|+++.....- ....  -.++++.+++.|+|||+++.+..+.+.
T Consensus       150 yDvIi~D~~~~~~-~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~  195 (276)
T d1mjfa_         150 FDVIIADSTDPVG-PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYL  195 (276)
T ss_dssp             EEEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEEEEETTT
T ss_pred             CCEEEEeCCCCCC-CcccccCHHHHHhhHhhcCCCceEEEecCCcch
Confidence            9999987643211 1111  157899999999999999987655443

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.78  E-value=2.4e-08  Score=86.71  Aligned_cols=109  Identities=17%  Similarity=0.114  Sum_probs=83.7

Q ss_pred             HHHHhcccc-cCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         190 KSAILNNKS-LFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       190 ~~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      .+.+.+... .....+|||||||+|.++..+++ .+..+++..|+.+.++       ..+..++++++.+|+.+ +.|  
T Consensus        69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~ri~~~~gd~~~-~~p--  138 (244)
T d1fp1d2          69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE-------NAPPLSGIEHVGGDMFA-SVP--  138 (244)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCCTTEEEEECCTTT-CCC--
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhh-------ccCCCCCeEEecCCccc-ccc--
Confidence            344555555 34557999999999999999988 4667999999977432       34445899999999875 334  


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ..|++++..+.|.. .++....+|+++++.|+|||.+++...
T Consensus       139 ~~D~~~l~~vLh~~-~de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         139 QGDAMILKAVCHNW-SDEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             CEEEEEEESSGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cceEEEEehhhhhC-CHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            56999988887775 445678899999999999999887654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=2.1e-08  Score=84.84  Aligned_cols=102  Identities=16%  Similarity=0.167  Sum_probs=86.0

Q ss_pred             cCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEecc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEW  276 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~  276 (319)
                      ..++.+++|+|+|.|.-++.++- .+..+++.+|.+. -+...++.....++ .+++++++++++... ..+||+|++-.
T Consensus        63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~-~~~fD~V~sRA  140 (207)
T d1jsxa_          63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFPS-EPPFDGVISRA  140 (207)
T ss_dssp             GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSCC-CSCEEEEECSC
T ss_pred             hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhcc-ccccceehhhh
Confidence            34557999999999999999887 4667999999999 88888888888888 689999999998753 36899999876


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      +       ..+..++.-+.+++++||.+++-..
T Consensus       141 ~-------~~~~~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         141 F-------ASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             S-------SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             h-------cCHHHHHHHHHHhcCCCcEEEEECC
Confidence            5       4567888999999999999986543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.73  E-value=4.1e-10  Score=98.12  Aligned_cols=90  Identities=17%  Similarity=0.263  Sum_probs=74.6

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+++.+...++.+|||||||+|.+|..+++.+. +|++||+++ +++.++++..   ..++++++++|+.+++++
T Consensus        15 ~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~~~~   90 (245)
T d1yuba_          15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCC
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhh---hccchhhhhhhhhccccc
Confidence            44566777888888889999999999999999999854 999999999 7766654432   236899999999999988


Q ss_pred             CCceeEEEeccchhh
Q psy8709         266 VESVDIIISEWMGYF  280 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~  280 (319)
                      ...++.|++|.+++.
T Consensus        91 ~~~~~~vv~NLPY~I  105 (245)
T d1yuba_          91 NKQRYKIVGNIPYHL  105 (245)
T ss_dssp             CSSEEEEEEECCSSS
T ss_pred             cceeeeEeeeeehhh
Confidence            788889999988653

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.72  E-value=3.2e-08  Score=88.97  Aligned_cols=116  Identities=15%  Similarity=0.080  Sum_probs=93.0

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEE
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIII  273 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Ii  273 (319)
                      +...++.+|||++||.|.-+..++..  +...++++|.++ -+....++++..|. .++.+...|...++.....||.|+
T Consensus       112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~~~~~~~fD~IL  190 (313)
T d1ixka_         112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVEFDKIL  190 (313)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGGGCCCEEEEE
T ss_pred             ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hccccccccccccccccccccEEE
Confidence            45678899999999999998888873  345899999999 99999999999888 678888888877766568899999


Q ss_pred             eccchhhhc------------ch-------hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         274 SEWMGYFLL------------FE-------TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       274 s~~~~~~l~------------~~-------~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      .+.+.....            ..       ....++|..+.++|||||+++.++||++-
T Consensus       191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~  249 (313)
T d1ixka_         191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  249 (313)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence            876543221            11       12456788999999999999999999864

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.66  E-value=3.4e-08  Score=83.50  Aligned_cols=117  Identities=15%  Similarity=0.025  Sum_probs=84.8

Q ss_pred             HHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy8709         186 TESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV  262 (319)
Q Consensus       186 ~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~  262 (319)
                      ...+.+.+.+.+...++.+|||.|||+|.+...+.+.  ....++|+|+++ .+.          +..+..++.++....
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----------~~~~~~~~~~~~~~~   73 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----------LPPWAEGILADFLLW   73 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----------CCTTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----------hcccceeeeeehhcc
Confidence            3567778888888888999999999999998877763  345899999999 321          224567888888765


Q ss_pred             ccCCCceeEEEeccchhhhcc--------------------------hhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         263 ELPVESVDIIISEWMGYFLLF--------------------------ETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~--------------------------~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      .. ...||+|++++++.....                          ......++..+.+.|+|||++.+-.+.-++
T Consensus        74 ~~-~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l  149 (223)
T d2ih2a1          74 EP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWL  149 (223)
T ss_dssp             CC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGG
T ss_pred             cc-ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeec
Confidence            53 478999999987532110                          001345677888999999998766554444

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.64  E-value=1.4e-08  Score=90.35  Aligned_cols=113  Identities=17%  Similarity=0.075  Sum_probs=83.7

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcC---CCCcEEEEEcCccccc-cCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNK---YDSQIEVYHKLLEDVE-LPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g---~~~~i~~i~~d~~~~~-~~~~~fD~Ii  273 (319)
                      ...++||-+|.|.|..+..+.+. +..+|+++|+++ +++.+++.+..+.   -.++++++.+|+...- -..++||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            34579999999999999999986 467999999999 9999988654321   1379999999987653 2346899999


Q ss_pred             eccchhhhcchhh--HHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         274 SEWMGYFLLFETM--IDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       274 s~~~~~~l~~~~~--~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ++...........  -.++++.+++.|+|||+++....+.+
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~  208 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF  208 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence            8754321111111  25789999999999999998876654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.63  E-value=1.6e-08  Score=90.88  Aligned_cols=113  Identities=13%  Similarity=0.041  Sum_probs=83.9

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc--C--CCCcEEEEEcCccccc-cCCCceeEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN--K--YDSQIEVYHKLLEDVE-LPVESVDII  272 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~--g--~~~~i~~i~~d~~~~~-~~~~~fD~I  272 (319)
                      ...++||.+|.|.|..+..+.+. +..+|+++|+++ +++.+++.+...  +  -.++++++.+|+.+.- ...++||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            44579999999999999999886 567999999999 999998876431  1  2368999999998752 234689999


Q ss_pred             Eeccchhhhcc--hhh--HHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         273 ISEWMGYFLLF--ETM--IDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       273 is~~~~~~l~~--~~~--~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      +++..-.+...  ...  -..+++.+.+.|+|||+++....+.+
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~  199 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMIL  199 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEEC
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcc
Confidence            97653211100  011  25788999999999999998665443

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=4.3e-08  Score=86.91  Aligned_cols=117  Identities=14%  Similarity=0.062  Sum_probs=88.3

Q ss_pred             ccccCCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-cCCCceeEE
Q psy8709         196 NKSLFNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-LPVESVDII  272 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-~~~~~fD~I  272 (319)
                      .+...++.+|||+++|.|.-+..++.. ....|+++|.++ -+...+++++..|. .++.....+..... ...+.||.|
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~-~~~~~~~~~~~~~~~~~~~~fd~I  175 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQFDRI  175 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             ccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc-cceeeeccccccchhcccccccEE
Confidence            345677899999999999999998885 346899999999 89999999999998 45555554443222 234689999


Q ss_pred             Eeccchhhhc------------ch-------hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         273 ISEWMGYFLL------------FE-------TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       273 is~~~~~~l~------------~~-------~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      +.+.+.....            .+       .....+|..+.++|||||+++.++||+..
T Consensus       176 L~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~  235 (284)
T d1sqga2         176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  235 (284)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             EEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence            9876542211            11       12456799999999999999999999864

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.63  E-value=2e-07  Score=80.64  Aligned_cols=95  Identities=12%  Similarity=0.156  Sum_probs=75.0

Q ss_pred             CcceeeccCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709         202 NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF  280 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~  280 (319)
                      ..+|||||||+|.++..+++. +..+++..|..+.++       ..+..++++++.+|+.+. .  ..+|++++..++|.
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~rv~~~~gD~f~~-~--p~aD~~~l~~vLHd  150 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVE-------NLSGSNNLTYVGGDMFTS-I--PNADAVLLKYILHN  150 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCBTTEEEEECCTTTC-C--CCCSEEEEESCGGG
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHH-------hCcccCceEEEecCcccC-C--CCCcEEEEEeeccc
Confidence            368999999999999998884 667999999987433       334558999999999763 3  36899998888776


Q ss_pred             hcchhhHHHHHHHHhcccCCC---cEEEee
Q psy8709         281 LLFETMIDSVIDARNRFLKPD---GVVCPN  307 (319)
Q Consensus       281 l~~~~~~~~~l~~~~r~Lkpg---G~li~~  307 (319)
                      + .++...++|+++++.|+||   |++++.
T Consensus       151 w-~d~~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         151 W-TDKDCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             S-CHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             C-ChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence            5 3456678999999999998   556544

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.5e-08  Score=86.39  Aligned_cols=91  Identities=20%  Similarity=0.248  Sum_probs=76.9

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+.+.+...++..|||||+|+|.+|..+++.+. +|+++|+++ +++...+.........+++++.+|+....++
T Consensus         7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~   85 (278)
T d1zq9a1           7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   85 (278)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence            45667777778888889999999999999999999864 999999999 9888888887766667999999999887765


Q ss_pred             CCceeEEEeccchhh
Q psy8709         266 VESVDIIISEWMGYF  280 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~  280 (319)
                        .++.||+|.+++.
T Consensus        86 --~~~~vV~NLPY~I   98 (278)
T d1zq9a1          86 --FFDTCVANLPYQI   98 (278)
T ss_dssp             --CCSEEEEECCGGG
T ss_pred             --hhhhhhcchHHHH
Confidence              4578999988753

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.61  E-value=1.2e-07  Score=79.23  Aligned_cols=109  Identities=21%  Similarity=0.224  Sum_probs=72.9

Q ss_pred             CCcceeeccCCCch----HHHHHHHc-C----CCEEEEEecHH-HHHHHHHHH--------------Hh----cCCC---
Q psy8709         201 NNKHVIDVGAGTGI----LSIFAAQA-G----AAKVFAIEKSD-IAYETIDII--------------RK----NKYD---  249 (319)
Q Consensus       201 ~~~~VLDiGcGtG~----ls~~la~~-g----~~~V~gvD~s~-~i~~a~~~~--------------~~----~g~~---  249 (319)
                      +.-+|+++|||+|.    +++.+.+. .    .-+++|+|+++ +++.|++..              ..    .+..   
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            34599999999996    44444442 1    12799999999 998887421              00    0000   


Q ss_pred             ---------CcEEEEEcCccccc-cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         250 ---------SQIEVYHKLLEDVE-LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       250 ---------~~i~~i~~d~~~~~-~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                               ..+.+...+..... .+.++||+|+|-.++.++ ..+...++++.+++.|+|||+|++...-
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-~~~~~~~vl~~l~~~L~pGG~L~lG~sE  173 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGHSE  173 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-CHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence                     12344444444332 334789999997776664 4466789999999999999999976543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.8e-07  Score=81.94  Aligned_cols=115  Identities=14%  Similarity=0.013  Sum_probs=86.8

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC---CCcee
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP---VESVD  270 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~---~~~fD  270 (319)
                      +...++.+|||++||.|.-+..++..  +...|+++|+++ -+...+++++..|. .++.+...|...+...   .++||
T Consensus        90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~~d~~~~~~~~~~~~~fD  168 (293)
T d2b9ea1          90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVH  168 (293)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEE
T ss_pred             cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeeehhhhhhcccccccceee
Confidence            34567889999999999998888773  456999999999 89999999999998 6899999998776422   25799


Q ss_pred             EEEeccchhhhc--------------c-------hhhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         271 IIISEWMGYFLL--------------F-------ETMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       271 ~Iis~~~~~~l~--------------~-------~~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      .|+.+.+.....              .       ......++..+. .|+|||.++.++||+..
T Consensus       169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~  231 (293)
T d2b9ea1         169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQ  231 (293)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCG
T ss_pred             EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCCh
Confidence            999887532210              0       001233555565 47999999999999863

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.53  E-value=6.8e-08  Score=85.81  Aligned_cols=114  Identities=18%  Similarity=0.146  Sum_probs=85.6

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc---CCCCcEEEEEcCccccc--cCCCceeEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN---KYDSQIEVYHKLLEDVE--LPVESVDII  272 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~---g~~~~i~~i~~d~~~~~--~~~~~fD~I  272 (319)
                      .+.++||-+|.|.|..+..+.+. +..+++.+|+++ +++.+++....+   ...++++++.+|....-  .+.++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            34579999999999999999996 567999999999 999998865322   22479999999987653  334689999


Q ss_pred             Eeccchhhhcch-hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         273 ISEWMGYFLLFE-TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       273 is~~~~~~l~~~-~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      +.+.....-... -.-..+++.+++.|+|||+++.+..+.+.
T Consensus       159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~  200 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWL  200 (290)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred             EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHH
Confidence            986542211110 11256899999999999999988776543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.51  E-value=2.2e-07  Score=79.90  Aligned_cols=102  Identities=16%  Similarity=0.139  Sum_probs=84.8

Q ss_pred             CCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC---CCceeEEEe
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP---VESVDIIIS  274 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~---~~~fD~Iis  274 (319)
                      ....+++|+|+|.|.-++.++- .+..+++.+|.+. -+...+......++ .++.++++.++++...   .++||+|++
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhccccccccccceEEEE
Confidence            3457899999999999999887 5677999999999 88888888888888 6899999999876422   368999998


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      -.+       ..+..++.-+..++++||.+++--.
T Consensus       148 RAv-------a~l~~ll~~~~~~l~~~g~~i~~KG  175 (239)
T d1xdza_         148 RAV-------ARLSVLSELCLPLVKKNGLFVALKA  175 (239)
T ss_dssp             ECC-------SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             hhh-------hCHHHHHHHHhhhcccCCEEEEECC
Confidence            765       5667889999999999999986543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.48  E-value=1.1e-07  Score=83.71  Aligned_cols=113  Identities=14%  Similarity=0.050  Sum_probs=85.0

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc---CCCCcEEEEEcCccccc-cCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN---KYDSQIEVYHKLLEDVE-LPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~---g~~~~i~~i~~d~~~~~-~~~~~fD~Ii  273 (319)
                      .+.++||-+|.|.|..+..+.+. +..+|+.+|+++ +++.|++....+   --.++++++.+|+...- ...++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            34579999999999999999986 567999999999 999998876432   12468999999987652 3357899999


Q ss_pred             eccchhhhcchh-hHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         274 SEWMGYFLLFET-MIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       274 s~~~~~~l~~~~-~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      .+.....-.... .-.++++.+.+.|+|||+++.+..+.+
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~  193 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPW  193 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcc
Confidence            875432111100 135788999999999999998776544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=7.5e-08  Score=85.30  Aligned_cols=113  Identities=17%  Similarity=0.127  Sum_probs=83.1

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhc---CCCCcEEEEEcCccccc-cCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKN---KYDSQIEVYHKLLEDVE-LPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~---g~~~~i~~i~~d~~~~~-~~~~~fD~Ii  273 (319)
                      ...++||-+|.|.|..+..+.+. +..+++.+|+++ +++.|++.+..+   --.++++++.+|+...- ...++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            34579999999999999999986 577999999999 999998876432   12479999999987652 2347899999


Q ss_pred             eccchhhhcchh-hHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         274 SEWMGYFLLFET-MIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       274 s~~~~~~l~~~~-~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      ++.....-.... .-.++++.+++.|+|||+++.+..+.+
T Consensus       157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~  196 (285)
T d2o07a1         157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW  196 (285)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchh
Confidence            875422111101 123678999999999999998765543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.48  E-value=7.1e-08  Score=86.28  Aligned_cols=114  Identities=16%  Similarity=0.115  Sum_probs=83.0

Q ss_pred             CCCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcC---CCCcEEEEEcCccccc-cCCCceeEEE
Q psy8709         200 FNNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNK---YDSQIEVYHKLLEDVE-LPVESVDIII  273 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g---~~~~i~~i~~d~~~~~-~~~~~fD~Ii  273 (319)
                      ...++||-+|.|.|..+..+.+. +..+|+.+|+++ +++.+++.+..+.   -.++++++.+|+...- ...++||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            34579999999999999999996 457999999999 9999988764321   1368999999987652 2347899999


Q ss_pred             eccchhhhcch-hhHHHHHHHHhcccCCCcEEEeecCccee
Q psy8709         274 SEWMGYFLLFE-TMIDSVIDARNRFLKPDGVVCPNRFTLSL  313 (319)
Q Consensus       274 s~~~~~~l~~~-~~~~~~l~~~~r~LkpgG~li~~~~t~~~  313 (319)
                      ++.....-... -.-..+++.+++.|+|||+++....+.+.
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~  225 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWL  225 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEECCCTTT
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHH
Confidence            87542211110 11356789999999999999988766554

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.40  E-value=4.5e-07  Score=78.27  Aligned_cols=107  Identities=17%  Similarity=0.163  Sum_probs=77.6

Q ss_pred             HHhcccccC-CCcceeeccCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccCCCce
Q psy8709         192 AILNNKSLF-NNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESV  269 (319)
Q Consensus       192 ~i~~~l~~~-~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~f  269 (319)
                      .++...... ...+|||||||+|.++..+++ .+..++++.|+.+.++       .....++++++.+|+.+ +.|.  .
T Consensus        71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~r~~~~~~d~~~-~~P~--a  140 (243)
T d1kyza2          71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIE-------DAPSYPGVEHVGGDMFV-SIPK--A  140 (243)
T ss_dssp             HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTT-------TCCCCTTEEEEECCTTT-CCCC--C
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhh-------hcccCCceEEecccccc-cCCC--c
Confidence            344444433 346899999999999999998 4667999999987332       23344789999999976 3443  4


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      |.++...+.|.. ..+....+|+++++.|+|||.+++...
T Consensus       141 d~~~l~~vlh~~-~d~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         141 DAVFMKWICHDW-SDEHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             SCEECSSSSTTS-CHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             ceEEEEEEeecC-CHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence            556655555543 446678899999999999999887644

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.40  E-value=8.5e-07  Score=73.16  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=84.4

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----  263 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----  263 (319)
                      .+.+++.+...++..++|..+|.|..+..+.+.+ .+|+|+|.++ ++..+.+.     ..+++.+++++..++.     
T Consensus         7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~   80 (182)
T d1wg8a2           7 YQEALDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAA   80 (182)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHH
Confidence            3445566677888999999999999999999974 5999999999 77776543     2368999999988763     


Q ss_pred             cCCCceeEEEeccch--hhhcc----hhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         264 LPVESVDIIISEWMG--YFLLF----ETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~--~~l~~----~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      ...+.+|.|+.+.-.  +.+..    ...+...|.....+|+|||.+++-..
T Consensus        81 ~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          81 LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            334789999986411  11111    12355678888999999999886543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.36  E-value=4.4e-07  Score=84.66  Aligned_cols=126  Identities=12%  Similarity=0.013  Sum_probs=92.6

Q ss_pred             cccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc----C----------CCEEEEEecHH-HHHHHHHHHHhcC
Q psy8709         183 PIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA----G----------AAKVFAIEKSD-IAYETIDIIRKNK  247 (319)
Q Consensus       183 ~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~----g----------~~~V~gvD~s~-~i~~a~~~~~~~g  247 (319)
                      -.+...+.+.+.+.+...++.+|+|..||+|.+...+.+.    .          ...++|+|+++ +...|.-++..++
T Consensus       144 f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g  223 (425)
T d2okca1         144 YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG  223 (425)
T ss_dssp             GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred             hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC
Confidence            3445778888888888888899999999999998877663    1          12599999999 8888888777776


Q ss_pred             CC-CcEEEEEcCccccccCCCceeEEEeccchhhhcc--------------hhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         248 YD-SQIEVYHKLLEDVELPVESVDIIISEWMGYFLLF--------------ETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       248 ~~-~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~l~~--------------~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      .. ....+..+|..... +..+||+|++|+|+.....              ...-..++..+.+.|+|||++.+-.+
T Consensus       224 ~~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         224 IGTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             CCSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence            53 34566777776543 3478999999998742110              11234588889999999998775443

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=2e-07  Score=81.04  Aligned_cols=90  Identities=9%  Similarity=0.064  Sum_probs=68.9

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP  265 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~  265 (319)
                      ..+.+.+.+.+...++..|||||||+|.+|..+++.+. +|+++|+++ +++..++...   ..++++++.+|+.++.++
T Consensus         7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~~~~   82 (252)
T d1qyra_           7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGCCHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhhccc
Confidence            45667777778888889999999999999999999854 999999999 7766654322   236899999999887543


Q ss_pred             C-----CceeEEEeccchhh
Q psy8709         266 V-----ESVDIIISEWMGYF  280 (319)
Q Consensus       266 ~-----~~fD~Iis~~~~~~  280 (319)
                      .     +.--.|++|.+++.
T Consensus        83 ~~~~~~~~~~~vvgNlPY~I  102 (252)
T d1qyra_          83 ELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             HHHHHHTSCEEEEEECCTTT
T ss_pred             ccccccCCCeEEEecchHHH
Confidence            1     22236778888664

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.26  E-value=1e-06  Score=80.74  Aligned_cols=106  Identities=20%  Similarity=0.092  Sum_probs=82.0

Q ss_pred             cCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCC--------------cEEEEEcCcccc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDS--------------QIEVYHKLLEDV  262 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~--------------~i~~i~~d~~~~  262 (319)
                      ..++.+|||..||+|..++..+. .|..+|++.|+|+ .++.+++|++.|+...              .+.+.+.|+...
T Consensus        43 ~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~  122 (375)
T d2dula1          43 ILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL  122 (375)
T ss_dssp             HHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred             HhCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh
Confidence            34568999999999999997655 6778999999999 9999999999987632              356666666544


Q ss_pred             cc-CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcc
Q psy8709         263 EL-PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTL  311 (319)
Q Consensus       263 ~~-~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~  311 (319)
                      .. ..+.||+|..++.+       ....++..+.+.++.||.+.++....
T Consensus       123 ~~~~~~~fDvIDiDPfG-------s~~pfldsAi~a~~~~Gll~vTaTD~  165 (375)
T d2dula1         123 MAERHRYFHFIDLDPFG-------SPMEFLDTALRSAKRRGILGVTATDG  165 (375)
T ss_dssp             HHHSTTCEEEEEECCSS-------CCHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             hHhhcCcCCcccCCCCC-------CcHHHHHHHHHHhccCCEEEEEecCc
Confidence            22 23679999998853       23457788888899999999876543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=1.6e-06  Score=71.32  Aligned_cols=97  Identities=14%  Similarity=0.237  Sum_probs=71.8

Q ss_pred             cCCCcceeeccCCCchHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc--------cCCCc
Q psy8709         199 LFNNKHVIDVGAGTGILSIFAAQA--GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE--------LPVES  268 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------~~~~~  268 (319)
                      ..++.+|||+||+.|.++..+.+.  ....++++|+.++          ... +++.++++|+.+..        ....+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------DPI-VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------CCC-TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------ccc-CCceEeecccccchhhhhhhhhccCcc
Confidence            356789999999999999988873  4579999999882          223 68899999987642        23468


Q ss_pred             eeEEEeccchhhhcc--------hhhHHHHHHHHhcccCCCcEEEe
Q psy8709         269 VDIIISEWMGYFLLF--------ETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       269 fD~Iis~~~~~~l~~--------~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +|+|+|+.+......        .......+.-+.++|++||.|+.
T Consensus        89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~  134 (180)
T d1ej0a_          89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV  134 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence            999999875433211        12244557777899999999984

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=8.9e-06  Score=77.61  Aligned_cols=128  Identities=10%  Similarity=-0.087  Sum_probs=87.6

Q ss_pred             CcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc----C---------------CCEEEEEecHH-HHHHHHH
Q psy8709         182 TPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA----G---------------AAKVFAIEKSD-IAYETID  241 (319)
Q Consensus       182 ~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~----g---------------~~~V~gvD~s~-~i~~a~~  241 (319)
                      .-.+...+.+.+...+...++.+|+|..||+|.+...+.+.    .               ...++|+|+++ +...|.-
T Consensus       145 qfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~  224 (524)
T d2ar0a1         145 QYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM  224 (524)
T ss_dssp             CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHH
T ss_pred             hhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHH
Confidence            34455778888888888888899999999999998776552    1               12589999999 8888887


Q ss_pred             HHHhcCCCCc----EEEEEcCccccc-cCCCceeEEEeccchhhhcc-----------hhhHHHHHHHHhcccCCCcEEE
Q psy8709         242 IIRKNKYDSQ----IEVYHKLLEDVE-LPVESVDIIISEWMGYFLLF-----------ETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       242 ~~~~~g~~~~----i~~i~~d~~~~~-~~~~~fD~Iis~~~~~~l~~-----------~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      ++-.++...+    -.+..++..... ....+||+|++|+|+..-..           ...--.++..+.+.|+|||++.
T Consensus       225 nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~a  304 (524)
T d2ar0a1         225 NCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA  304 (524)
T ss_dssp             HHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEE
Confidence            7776665322    123333333221 23468999999998742111           1112347888999999999977


Q ss_pred             eecC
Q psy8709         306 PNRF  309 (319)
Q Consensus       306 ~~~~  309 (319)
                      +-.+
T Consensus       305 iIlP  308 (524)
T d2ar0a1         305 VVVP  308 (524)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5544

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.76  E-value=8.5e-06  Score=67.81  Aligned_cols=40  Identities=33%  Similarity=0.428  Sum_probs=35.9

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      ..++|++|||+|||||.+++.++..|+++|+++|+++...
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~   84 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI   84 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHH
Confidence            4578999999999999999999999999999999986543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.75  E-value=8.1e-05  Score=58.88  Aligned_cols=96  Identities=19%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHc-C
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQA-G  223 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g  223 (319)
                      ..++|++|||++||||.++++|+..|+++|+++|.++.......-  .+ .......   -..+=+|.-  ...+... +
T Consensus        11 ~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~--n~-~~~~~~~---~~~ii~~D~--~~~l~~~~~   82 (152)
T d2esra1          11 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD--NI-IMTKAEN---RFTLLKMEA--ERAIDCLTG   82 (152)
T ss_dssp             SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH--HH-HTTTCGG---GEEEECSCH--HHHHHHBCS
T ss_pred             hhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhh--hh-hhccccc---chhhhcccc--ccccccccc
Confidence            357899999999999999999999999999999998654433111  11 1112111   123333332  2223232 2


Q ss_pred             CCEEEEEec--HH-HHHHHHHHHHhcCC
Q psy8709         224 AAKVFAIEK--SD-IAYETIDIIRKNKY  248 (319)
Q Consensus       224 ~~~V~gvD~--s~-~i~~a~~~~~~~g~  248 (319)
                      .-.++-+|+  .. ......+.+...++
T Consensus        83 ~fDiIf~DPPy~~~~~~~~l~~i~~~~~  110 (152)
T d2esra1          83 RFDLVFLDPPYAKETIVATIEALAAKNL  110 (152)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTC
T ss_pred             ccceeEechhhccchHHHHHHHHHHCCC
Confidence            236788886  34 55666666665543

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.71  E-value=2.6e-05  Score=67.00  Aligned_cols=76  Identities=17%  Similarity=0.139  Sum_probs=58.1

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHH---HhcC-----CCCcEEEEEcCccccc-cCCCceeEE
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDII---RKNK-----YDSQIEVYHKLLEDVE-LPVESVDII  272 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~---~~~g-----~~~~i~~i~~d~~~~~-~~~~~fD~I  272 (319)
                      .+|||.-||.|..+..++..|+ +|+++|.++ +.....+.+   ..+.     ...+++++++|..++- -..++||+|
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI  168 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence            4899999999999999999986 899999999 554444433   3321     1248999999986653 224679999


Q ss_pred             Eeccchh
Q psy8709         273 ISEWMGY  279 (319)
Q Consensus       273 is~~~~~  279 (319)
                      +.++|+.
T Consensus       169 YlDPMFp  175 (250)
T d2oyra1         169 YLDPMFP  175 (250)
T ss_dssp             EECCCCC
T ss_pred             EECCCCc
Confidence            9999974

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.64  E-value=1.5e-05  Score=67.97  Aligned_cols=99  Identities=11%  Similarity=0.041  Sum_probs=65.3

Q ss_pred             CCcceeeccCCCchHHHHHHH----c-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----cCCCcee
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQ----A-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----LPVESVD  270 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~----~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----~~~~~fD  270 (319)
                      ++++|||+|++.|.-+..++.    . ..++++|+|+.+ .....      ....++++++.+|..+..    +....+|
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~------~~~~~~I~~i~gDs~~~~~~~~l~~~~~d  153 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP------ASDMENITLHQGDCSDLTTFEHLREMAHP  153 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC------GGGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh------hccccceeeeecccccHHHHHHHHhcCCC
Confidence            457999999999987766654    1 356999999976 22111      112368999999976542    2334688


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCc
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFT  310 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t  310 (319)
                      .|+.+..+.   .+..+..+  ...++|+|||++++....
T Consensus       154 lIfID~~H~---~~~v~~~~--~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         154 LIFIDNAHA---NTFNIMKW--AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             EEEEESSCS---SHHHHHHH--HHHHTCCTTCEEEECSCH
T ss_pred             EEEEcCCcc---hHHHHHHH--HHhcccCcCCEEEEEcCC
Confidence            888765421   22333333  345799999999987653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.63  E-value=2.6e-05  Score=63.84  Aligned_cols=56  Identities=27%  Similarity=0.254  Sum_probs=44.8

Q ss_pred             hhhchhHHHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         125 EMIKDTVRTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       125 ~m~~d~~r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .+++.++|..-...     ....++.+|||+|||+|.+++.+++.+ .+|+++|+++.....
T Consensus        15 ~~t~~eir~~il~~-----l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~   70 (186)
T d1l3ia_          15 GPTAMEVRCLIMCL-----AEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAIST   70 (186)
T ss_dssp             CCCCHHHHHHHHHH-----HCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHH
T ss_pred             CCChHHHHHHHHHh-----cCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHH
Confidence            47888887655544     467799999999999999999998764 589999998765544

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.56  E-value=5.9e-05  Score=62.68  Aligned_cols=43  Identities=35%  Similarity=0.424  Sum_probs=37.4

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ....+|++|||+|||||.+++.++..|+.+|+++|+++.....
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~   84 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV   84 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHH
Confidence            4567899999999999999999999999999999999654443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.56  E-value=4e-05  Score=66.17  Aligned_cols=43  Identities=26%  Similarity=0.478  Sum_probs=36.7

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESY  189 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~  189 (319)
                      ..++++|||+|||+|.+++.+++.|+ +|+|+|+++......+-
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~  160 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHH
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHH
Confidence            46899999999999999999999885 69999999877766443

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.54  E-value=2.2e-05  Score=67.05  Aligned_cols=115  Identities=14%  Similarity=0.163  Sum_probs=67.6

Q ss_pred             HHHHhcccccCCCcceeeccCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         190 KSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       190 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      ..++.+.....++.+|+|+|||.|.++..++... ...|.|+++-- ..+.-. .....+. +-+++...+.. ...+.+
T Consensus        55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~-~~~~~~~-ni~~~~~~~dv-~~l~~~  131 (257)
T d2p41a1          55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPI-PMSTYGW-NLVRLQSGVDV-FFIPPE  131 (257)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCSTTG-GGEEEECSCCT-TTSCCC
T ss_pred             HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCc-ccccccc-ccccchhhhhH-HhcCCC
Confidence            3445555566777899999999999999999863 34777877742 100000 0011111 23344433322 224457


Q ss_pred             ceeEEEeccchh---hhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         268 SVDIIISEWMGY---FLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       268 ~fD~Iis~~~~~---~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ..|+|+|+..-.   ........-.++.-+.++|+|||.|++=
T Consensus       132 ~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         132 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            899999985311   1111122335677888999999988753

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.49  E-value=0.00029  Score=60.22  Aligned_cols=159  Identities=9%  Similarity=0.014  Sum_probs=95.1

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchH
Q psy8709         136 YKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGIL  215 (319)
Q Consensus       136 ~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~l  215 (319)
                      +..++ +-..+..+..++|..||||.+.++|+.......-+......   .+.+..+-......     +.+-    +..
T Consensus        39 l~~al-~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~---fe~w~~~~~~~w~~-----l~~~----a~~  105 (249)
T d1o9ga_          39 FQRAL-ARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDV---DPAPLELAAKNLAL-----LSPA----GLT  105 (249)
T ss_dssp             HHHHH-HTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEES---CHHHHHHHHHHHHT-----TSHH----HHH
T ss_pred             HHHHh-hhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchh---hhcccccCHHHHHH-----HHHH----HHH
Confidence            33344 44556677789999999999999999887655555433211   12222111111100     0000    000


Q ss_pred             HHHHHHcCCCEEEEEecHH-HHHHH---HHHHHhcCCCCcEEEEEcCcccccc-----CCCceeEEEeccchhhhcc---
Q psy8709         216 SIFAAQAGAAKVFAIEKSD-IAYET---IDIIRKNKYDSQIEVYHKLLEDVEL-----PVESVDIIISEWMGYFLLF---  283 (319)
Q Consensus       216 s~~la~~g~~~V~gvD~s~-~i~~a---~~~~~~~g~~~~i~~i~~d~~~~~~-----~~~~fD~Iis~~~~~~l~~---  283 (319)
                      ...-.......++|.|+++ +++.|   ++++...|+...+++...|+.+...     +....++||+|+++---..   
T Consensus       106 ~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~  185 (249)
T d1o9ga_         106 ARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG  185 (249)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS
T ss_pred             HHhccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccc
Confidence            0000000112577899999 88887   4688889998999999999865431     2356799999998654332   


Q ss_pred             ---hhhHHHHHHHHhcccCCCcEEEee
Q psy8709         284 ---ETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       284 ---~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                         ...+..+...+.+.+.....++++
T Consensus       186 ~~~~~~~~~~~~~l~~~~p~~s~~~it  212 (249)
T d1o9ga_         186 QVPGQPVAGLLRSLASALPAHAVIAVT  212 (249)
T ss_dssp             CCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             cchHHHHHHHHHHHHccCCCCcEEEEe
Confidence               134667777788888665555554

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.39  E-value=0.00016  Score=59.77  Aligned_cols=50  Identities=22%  Similarity=0.388  Sum_probs=36.8

Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         133 TESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       133 ~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...+...+...  +.++.+|||+|||+|.++...++.+. +++|+|++.....
T Consensus        24 ~~~~~~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~   73 (226)
T d1ve3a1          24 IETLEPLLMKY--MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIR   73 (226)
T ss_dssp             HHHHHHHHHHS--CCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             HHHHHHHHHHh--cCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchh
Confidence            33444444443  34778999999999999999998865 7999998754433

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.36  E-value=0.00024  Score=59.99  Aligned_cols=49  Identities=22%  Similarity=0.424  Sum_probs=38.3

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         136 YKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       136 ~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      +...+.......++++|||+|||+|.+++..++.|+ .++|+|.++....
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~   77 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLR   77 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccc
Confidence            334444455566788999999999999999999886 7999999865443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=5.2e-05  Score=66.32  Aligned_cols=54  Identities=30%  Similarity=0.428  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         132 RTESYKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       132 r~~~~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      |...+...+.......++++|||+|||+|.+++..++.|. .|+|+|.++.....
T Consensus        40 r~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~   93 (292)
T d1xvaa_          40 RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKY   93 (292)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             hHHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHH
Confidence            3444444444444445678999999999999999998875 79999998765543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=9.3e-05  Score=65.63  Aligned_cols=31  Identities=61%  Similarity=0.906  Sum_probs=28.7

Q ss_pred             EEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         153 IDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      ||+|||+|.+++++++.||++|+++|.++..
T Consensus        38 LDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~   68 (316)
T d1oria_          38 LDVGSGTGILCMFAAKAGARKVIGIECSSIS   68 (316)
T ss_dssp             EEETCTTSHHHHHHHHTTCSEEEEEECSTTH
T ss_pred             EEEecCCcHHHHHHHHhCCCEEEEEcCcHHH
Confidence            8999999999999999999999999987654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.28  E-value=8.7e-05  Score=60.00  Aligned_cols=45  Identities=13%  Similarity=0.104  Sum_probs=37.0

Q ss_pred             HhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         141 LNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       141 ~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      +....+.++.+|||+|||+|..++..|+.| ..|+|+|++......
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~G-~~V~gvD~S~~~i~~   57 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVER   57 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHH
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHcC-CceEeecccHHHHHH
Confidence            334567799999999999999999999887 589999998654444

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=9.7e-05  Score=65.26  Aligned_cols=32  Identities=56%  Similarity=0.884  Sum_probs=29.3

Q ss_pred             EEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         153 IDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      ||+|||+|.+++++|+.|+.+|+++|.++...
T Consensus        40 LDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~   71 (311)
T d2fyta1          40 LDVGCGTGILSMFAAKAGAKKVLGVDQSEILY   71 (311)
T ss_dssp             EEETCTTSHHHHHHHHTTCSEEEEEESSTHHH
T ss_pred             EEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH
Confidence            79999999999999999999999999987543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.17  E-value=0.00019  Score=60.30  Aligned_cols=47  Identities=13%  Similarity=0.283  Sum_probs=38.6

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ++.....+.++.+|||+|||+|.++..+++.+ .+++|+|++......
T Consensus         7 ~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~   53 (234)
T d1xxla_           7 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEV   53 (234)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhh
Confidence            44455678999999999999999999999877 579999998755433

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00036  Score=58.39  Aligned_cols=39  Identities=33%  Similarity=0.519  Sum_probs=32.9

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ..++.+|||+|||+|.++...++.|+ +|+|+|.++....
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~   78 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLE   78 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHH
T ss_pred             cCCCCEEEEECCCCchhcccccccce-EEEEeeccccccc
Confidence            34778999999999999999998875 7999999865443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00016  Score=64.41  Aligned_cols=30  Identities=53%  Similarity=0.882  Sum_probs=28.2

Q ss_pred             EEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         153 IDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       153 LD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ||+|||+|.+++++++.|+++|+++|.++.
T Consensus        43 LDlGcGtG~ls~~aa~~Ga~~V~avd~s~~   72 (328)
T d1g6q1_          43 LDVGCGTGILSMFAAKHGAKHVIGVDMSSI   72 (328)
T ss_dssp             EEETCTTSHHHHHHHHTCCSEEEEEESSTH
T ss_pred             EEeCCCCCHHHHHHHHhCCCEEEEEeCCHH
Confidence            799999999999999999999999998853

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00028  Score=59.76  Aligned_cols=49  Identities=14%  Similarity=0.118  Sum_probs=38.8

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...+.....+.++++|||+|||+|.++..+++..+.+|+|+|.++....
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~   70 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTA   70 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhh
Confidence            3445566788999999999999999999887654468999999755443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00026  Score=59.95  Aligned_cols=41  Identities=17%  Similarity=0.260  Sum_probs=34.7

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...++++|||+|||+|.+++..+..++..|+|+|+++....
T Consensus        48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~   88 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNRE   88 (257)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHH
T ss_pred             cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHH
Confidence            45688999999999999998888888889999999865433

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.86  E-value=0.00041  Score=58.65  Aligned_cols=41  Identities=20%  Similarity=0.254  Sum_probs=35.3

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCc
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTP  183 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~  183 (319)
                      +..+.+|.+|||+|||+|..+..++..+ ...|+|+|+++..
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~  110 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRI  110 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHH
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHH
Confidence            5668899999999999999999988765 7799999998543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.86  E-value=0.00068  Score=55.31  Aligned_cols=46  Identities=17%  Similarity=0.341  Sum_probs=36.4

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      +..+....++++|||+|||+|.+++.+++.+ .+++++|+++.....
T Consensus        44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~   89 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKL   89 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHH
T ss_pred             HHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchh
Confidence            3445567789999999999999999998754 589999998544433

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.86  E-value=0.00051  Score=57.12  Aligned_cols=44  Identities=23%  Similarity=0.368  Sum_probs=36.7

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHh-cCCceEEeeecCCCcccH
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~-~ga~~V~avd~d~~~~~~  186 (319)
                      +..+.||.+|||+|||+|..+..++. .+..+|+|+|+++.....
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~   95 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEK   95 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHH
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHH
Confidence            56788999999999999999988885 467799999998755543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00069  Score=60.09  Aligned_cols=72  Identities=17%  Similarity=0.142  Sum_probs=53.7

Q ss_pred             HHHHHHHhcccccC------CCcceeeccCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcC
Q psy8709         187 ESYKSAILNNKSLF------NNKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKL  258 (319)
Q Consensus       187 ~~~~~~i~~~l~~~------~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d  258 (319)
                      ..+.+.+++.+...      .+.+|||+|+|.|.+|..+.+. +..+|+++|+++ +.+...+...    .++++++++|
T Consensus        23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D   98 (322)
T d1i4wa_          23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRD   98 (322)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSC
T ss_pred             HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCc
Confidence            45555565554432      4568999999999999999986 456999999999 7777665432    2578999999


Q ss_pred             cccc
Q psy8709         259 LEDV  262 (319)
Q Consensus       259 ~~~~  262 (319)
                      +..+
T Consensus        99 ~l~~  102 (322)
T d1i4wa_          99 PYDW  102 (322)
T ss_dssp             TTCH
T ss_pred             hhhc
Confidence            8654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.80  E-value=0.00054  Score=57.84  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++++|||+|||+|.++...++.|. +++|+|.++.....
T Consensus        35 ~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~   74 (246)
T d1y8ca_          35 NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSE   74 (246)
T ss_dssp             TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHH
T ss_pred             CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhh
Confidence            34678999999999999999999886 79999998765443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.75  E-value=0.00066  Score=54.77  Aligned_cols=99  Identities=18%  Similarity=0.162  Sum_probs=61.6

Q ss_pred             HHhcccccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc---c---
Q psy8709         192 AILNNKSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED---V---  262 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~---~---  262 (319)
                      .+.+..+..++.+||-+|+| .|.+...+++ .|+.+|+++|.++ .++.++    +.|. +  .++...-.+   .   
T Consensus        19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~----~lGa-~--~vi~~~~~~~~~~~~~   91 (182)
T d1vj0a2          19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIGA-D--LTLNRRETSVEERRKA   91 (182)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTTC-S--EEEETTTSCHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccc----cccc-e--EEEeccccchHHHHHH
Confidence            34444566788999999998 4677777777 4777999999999 555554    3443 1  222221111   1   


Q ss_pred             --c-cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         263 --E-LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       263 --~-~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                        . .....+|+|+-...     .    ...+....+.|+|||+++.
T Consensus        92 i~~~~~~~g~Dvvid~vG-----~----~~~~~~a~~~l~~~G~iv~  129 (182)
T d1vj0a2          92 IMDITHGRGADFILEATG-----D----SRALLEGSELLRRGGFYSV  129 (182)
T ss_dssp             HHHHTTTSCEEEEEECSS-----C----TTHHHHHHHHEEEEEEEEE
T ss_pred             HHHhhCCCCceEEeecCC-----c----hhHHHHHHHHhcCCCEEEE
Confidence              1 11246999985321     1    1234556679999999873

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.71  E-value=0.00065  Score=56.43  Aligned_cols=42  Identities=26%  Similarity=0.308  Sum_probs=35.2

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..+.++++|||+|||+|.++...++.++ +++|+|+++.....
T Consensus        11 ~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~   52 (231)
T d1vl5a_          11 AALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKV   52 (231)
T ss_dssp             HTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHH
T ss_pred             cCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhh
Confidence            4678899999999999999999998874 79999998655443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00052  Score=57.52  Aligned_cols=45  Identities=18%  Similarity=0.031  Sum_probs=36.4

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .+.......++.+|||+|||+|..+...|+.|. .|+|+|+++..+
T Consensus        36 ~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai   80 (229)
T d2bzga1          36 HLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGI   80 (229)
T ss_dssp             HHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHH
T ss_pred             HHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHH
Confidence            333334566889999999999999999999887 799999986544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.69  E-value=0.001  Score=57.32  Aligned_cols=51  Identities=16%  Similarity=0.167  Sum_probs=39.2

Q ss_pred             HHHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         136 YKSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       136 ~~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ....+.....+.++.+|||+|||+|.++..+++.....|+|+|+++.....
T Consensus        55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~  105 (282)
T d2o57a1          55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKR  105 (282)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhh
Confidence            334455566788999999999999999988886544589999998755443

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.001  Score=60.84  Aligned_cols=47  Identities=23%  Similarity=0.335  Sum_probs=40.0

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~  186 (319)
                      +....++.+++++||+|||+|.+.+.+| ..|..+++|+|+++.....
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~  255 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDL  255 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHH
T ss_pred             HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            4455678999999999999999999887 6788899999999866655

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=96.63  E-value=0.00062  Score=57.84  Aligned_cols=41  Identities=20%  Similarity=0.333  Sum_probs=35.2

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++++|||+|||+|......++.|...++|+|+++.....
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~   62 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIND   62 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHH
Confidence            45789999999999999888888898899999998765544

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.61  E-value=0.0048  Score=49.16  Aligned_cols=100  Identities=17%  Similarity=0.185  Sum_probs=64.3

Q ss_pred             HHhcccccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----c
Q psy8709         192 AILNNKSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----E  263 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~  263 (319)
                      .+.+..+..++.+||-+||| .|.++..+++ .|...|+.+|.++ -++.++    +.|. +  +++..+-++.     .
T Consensus        19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~----~~Ga-~--~~i~~~~~~~~~~i~~   91 (174)
T d1f8fa2          19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK----QLGA-T--HVINSKTQDPVAAIKE   91 (174)
T ss_dssp             HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----HHTC-S--EEEETTTSCHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH----HcCC-e--EEEeCCCcCHHHHHHH
Confidence            44556677888999999997 3455566666 5888899999999 555554    3443 1  3343332222     1


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +..+.||+|+-...     .    ...++...++++|+|.+++-
T Consensus        92 ~t~gg~D~vid~~G-----~----~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          92 ITDGGVNFALESTG-----S----PEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             HTTSCEEEEEECSC-----C----HHHHHHHHHTEEEEEEEEEC
T ss_pred             HcCCCCcEEEEcCC-----c----HHHHHHHHhcccCceEEEEE
Confidence            23457999984321     1    23456677899999998853

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.60  E-value=0.00017  Score=59.40  Aligned_cols=105  Identities=15%  Similarity=0.039  Sum_probs=66.0

Q ss_pred             ccccCCCcceeeccCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----c-cCC
Q psy8709         196 NKSLFNNKHVIDVGAGT-GILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----E-LPV  266 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcGt-G~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~-~~~  266 (319)
                      .....++.+||-+|||. |.++..+++ .+..+|+++|.++ .++.|+    +.|.   ..++...-.++     . ...
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~----~~Ga---~~~~~~~~~~~~~~i~~~t~g   92 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK----AQGF---EIADLSLDTPLHEQIAALLGE   92 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTC---EEEETTSSSCHHHHHHHHHSS
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh----hccc---cEEEeCCCcCHHHHHHHHhCC
Confidence            45677889999999996 666777776 5788999999999 555554    4443   12222211111     0 123


Q ss_pred             CceeEEEeccch------hhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         267 ESVDIIISEWMG------YFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       267 ~~fD~Iis~~~~------~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ..+|+++-..-.      +...........++.+.+.++|||.+++-
T Consensus        93 ~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          93 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            569999843211      11111122346788889999999998754

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00083  Score=54.51  Aligned_cols=93  Identities=22%  Similarity=0.257  Sum_probs=56.9

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcC-CC
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAG-AA  225 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~  225 (319)
                      .++.+|||++||||.++++|+..|+.+|+.+|.+......  +.+.+. ..... ...++   ++.  ....+...+ .-
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~--~k~N~~-~~~~~-~~~ii---~~d--~~~~l~~~~~~f  112 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQ--LIKNLA-TLKAG-NARVV---NSN--AMSFLAQKGTPH  112 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHH--HHHHHH-HTTCC-SEEEE---CSC--HHHHHSSCCCCE
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhH--HHHHHh-hcccc-ceeee---eec--cccccccccccc
Confidence            5788999999999999999999999999999998544433  222221 11111 12222   332  222232222 23


Q ss_pred             EEEEEecH--H-HHHHHHHHHHhcCC
Q psy8709         226 KVFAIEKS--D-IAYETIDIIRKNKY  248 (319)
Q Consensus       226 ~V~gvD~s--~-~i~~a~~~~~~~g~  248 (319)
                      .++-+|+.  . ..+.....+..+++
T Consensus       113 DlIf~DPPY~~~~~~~~l~~l~~~~~  138 (183)
T d2fpoa1         113 NIVFVDPPFRRGLLEETINLLEDNGW  138 (183)
T ss_dssp             EEEEECCSSSTTTHHHHHHHHHHTTC
T ss_pred             CEEEEcCccccchHHHHHHHHHHCCC
Confidence            78888863  3 55666666666544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.56  E-value=0.0011  Score=57.43  Aligned_cols=45  Identities=20%  Similarity=0.189  Sum_probs=37.0

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      .+.....+.+|.+|||+|||.|.++..+++..+..|++++++...
T Consensus        43 ~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q   87 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQ   87 (280)
T ss_dssp             HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHH
T ss_pred             HHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHH
Confidence            455667889999999999999999998886544589999987544

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.56  E-value=0.00078  Score=57.91  Aligned_cols=41  Identities=39%  Similarity=0.388  Sum_probs=35.7

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..+|.+|||+|||+|.+++.+++.|+.+|+++|+++.....
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~  145 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF  145 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHH
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHH
Confidence            45899999999999999999999998899999998754443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.55  E-value=0.0006  Score=54.89  Aligned_cols=96  Identities=16%  Similarity=0.273  Sum_probs=61.6

Q ss_pred             cccccCCCcceeeccCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----c-cC
Q psy8709         195 NNKSLFNNKHVIDVGAGT-GILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----E-LP  265 (319)
Q Consensus       195 ~~l~~~~~~~VLDiGcGt-G~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~-~~  265 (319)
                      ...+..++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.++    +.|..   +++.-.-++.     . ..
T Consensus        21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~----~lGa~---~~i~~~~~~~~~~v~~~t~   93 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK----FYGAT---DILNYKNGHIEDQVMKLTN   93 (174)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH----HHTCS---EEECGGGSCHHHHHHHHTT
T ss_pred             HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH----hhCcc---ccccccchhHHHHHHHHhh
Confidence            345677889999999985 788888888 4777899999999 555554    34431   2222221111     1 12


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ...+|+||-....         ...+....++++|+|.+++
T Consensus        94 g~G~D~vid~~g~---------~~~~~~a~~~~~~~G~iv~  125 (174)
T d1jqba2          94 GKGVDRVIMAGGG---------SETLSQAVKMVKPGGIISN  125 (174)
T ss_dssp             TSCEEEEEECSSC---------TTHHHHHHHHEEEEEEEEE
T ss_pred             ccCcceEEEccCC---------HHHHHHHHHHHhcCCEEEE
Confidence            2469999854321         1234556678999999985

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.53  E-value=0.002  Score=52.11  Aligned_cols=41  Identities=29%  Similarity=0.438  Sum_probs=36.0

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      ...++.+|||+.||||.++++++..||..|+.+|.+.....
T Consensus        38 ~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~   78 (182)
T d2fhpa1          38 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALK   78 (182)
T ss_dssp             SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             HhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999854433

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=96.53  E-value=0.0023  Score=51.15  Aligned_cols=40  Identities=25%  Similarity=0.318  Sum_probs=32.7

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      +.++.+|||++||+|.++++++..|+ ++.++|.++.....
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~   78 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRL   78 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHH
T ss_pred             ccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhh
Confidence            45788999999999999999999887 56688887554443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.002  Score=53.41  Aligned_cols=41  Identities=20%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhc---CCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQA---GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~---ga~~V~avd~d~~~~~~  186 (319)
                      ..++.+|||+|||+|.++..+++.   ...+++|+|.++.....
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~   80 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER   80 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHH
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHH
Confidence            458889999999999999988753   46799999998654443

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.38  E-value=0.0042  Score=55.55  Aligned_cols=107  Identities=14%  Similarity=0.150  Sum_probs=67.4

Q ss_pred             CcceeeccCCCchHHHHHHHc-----------------CCCEEEEEecHH-HHHHHHHHHHhcC-CCCc--EEEEEcCcc
Q psy8709         202 NKHVIDVGAGTGILSIFAAQA-----------------GAAKVFAIEKSD-IAYETIDIIRKNK-YDSQ--IEVYHKLLE  260 (319)
Q Consensus       202 ~~~VLDiGcGtG~ls~~la~~-----------------g~~~V~gvD~s~-~i~~a~~~~~~~g-~~~~--i~~i~~d~~  260 (319)
                      .-+|.|+||.+|..++.+...                 +.-+|+--|+.. =....-+.+.... ...+  +.-+.|.+.
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence            358999999999887432211                 111455556544 1112222221111 1111  233456666


Q ss_pred             ccccCCCceeEEEeccchhhhcc------------------------------hhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         261 DVELPVESVDIIISEWMGYFLLF------------------------------ETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       261 ~~~~~~~~fD~Iis~~~~~~l~~------------------------------~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      .--+|.++.++++|....||+..                              ..++..+|+...+-|+|||++++..
T Consensus       132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            65688899999999999999731                              2367789999999999999999754

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0011  Score=55.63  Aligned_cols=37  Identities=22%  Similarity=0.236  Sum_probs=32.5

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      .+|++|||+|||+|..+...++.++.+++++|+++..
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~   88 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGV   88 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHH
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHH
Confidence            4788999999999999999998887889999998543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0027  Score=50.38  Aligned_cols=97  Identities=18%  Similarity=0.148  Sum_probs=60.5

Q ss_pred             ccccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc--------c
Q psy8709         196 NKSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE--------L  264 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~--------~  264 (319)
                      ..+..++.+||=+||| .|.++..+++ .|+.+|+++|.++ -++.|    ++.|. +.  ++..+-++..        .
T Consensus        21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a----~~~Ga-~~--~~~~~~~~~~~~~~~~~~~   93 (171)
T d1pl8a2          21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA----KEIGA-DL--VLQISKESPQEIARKVEGQ   93 (171)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH----HHTTC-SE--EEECSSCCHHHHHHHHHHH
T ss_pred             HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHH----HHhCC-cc--ccccccccccccccccccc
Confidence            3466778899999998 4455566666 5777999999999 55544    44454 22  2222211110        1


Q ss_pred             CCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         265 PVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       265 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ....+|+|+-...     .    ...+....+++++||++++--
T Consensus        94 ~g~g~Dvvid~~G-----~----~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2          94 LGCKPEVTIECTG-----A----EASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             HTSCCSEEEECSC-----C----HHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCceEEEeccC-----C----chhHHHHHHHhcCCCEEEEEe
Confidence            1257899885332     1    235666778999999988543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.22  E-value=0.0022  Score=53.88  Aligned_cols=42  Identities=26%  Similarity=0.373  Sum_probs=35.7

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCc
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTP  183 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~  183 (319)
                      .+..+.||.+|||+|||+|..+..+++ .| ...|+|+|+++..
T Consensus        67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~  110 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRV  110 (227)
T ss_dssp             CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHH
T ss_pred             cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHH
Confidence            456788999999999999999999884 46 7899999998543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0032  Score=55.65  Aligned_cols=47  Identities=17%  Similarity=0.460  Sum_probs=39.3

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccH
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~  186 (319)
                      +.....+.++.+|||+|||+|.+.+.+| ..++.+++|+|+++.....
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~  190 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKY  190 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHH
T ss_pred             HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence            4455678899999999999999999887 5678899999999766554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.18  E-value=0.0023  Score=55.09  Aligned_cols=48  Identities=31%  Similarity=0.419  Sum_probs=39.7

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~  186 (319)
                      +|.....+.+|.+|||+|||+|.++..+|+. + ..+|+++|+++.....
T Consensus        94 ~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~  143 (266)
T d1o54a_          94 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKL  143 (266)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHH
T ss_pred             HHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence            4556678999999999999999999999854 4 6799999998755444

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.16  E-value=0.01  Score=46.63  Aligned_cols=96  Identities=17%  Similarity=0.150  Sum_probs=59.8

Q ss_pred             ccccCCCcceeeccCC-CchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc-c--------c
Q psy8709         196 NKSLFNNKHVIDVGAG-TGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED-V--------E  263 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~-~--------~  263 (319)
                      ..+..++.+||-+||| .|.++..+++. |. +|+++|.++ -++.++    +.+.  ...+......+ .        .
T Consensus        21 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~----~~ga--~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          21 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAK----NCGA--DVTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH----HTTC--SEEEECCTTTSCHHHHHHHHHH
T ss_pred             HhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHH----HcCC--cEEEeccccccccchhhhhhhc
Confidence            3456778899999998 66777777774 55 999999999 555544    3443  22222211111 1        0


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .....+|+|+-...     .    ...+....++|+|+|.++.-
T Consensus        94 ~~g~g~D~vid~~g-----~----~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          94 AIGDLPNVTIDCSG-----N----EKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             HSSSCCSEEEECSC-----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred             ccccCCceeeecCC-----C----hHHHHHHHHHHhcCCceEEE
Confidence            11256899984321     1    23456667899999999854

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0024  Score=54.60  Aligned_cols=41  Identities=12%  Similarity=0.235  Sum_probs=33.6

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      .....++++||+|||+|.+++..+..+..+|+++|.++...
T Consensus        50 ~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i   90 (263)
T d2g72a1          50 TGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNR   90 (263)
T ss_dssp             TSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHH
T ss_pred             CCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHH
Confidence            46678999999999999998777766667999999975433

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.16  E-value=0.0024  Score=54.36  Aligned_cols=47  Identities=19%  Similarity=0.371  Sum_probs=35.5

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCccc
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~  185 (319)
                      +|.....+.||.+|||+|||+|.+++..++. + ..+|+++|.+.....
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~  124 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLK  124 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHH
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHH
Confidence            4556678899999999999999999998854 5 679999999854433

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.15  E-value=0.003  Score=50.59  Aligned_cols=99  Identities=17%  Similarity=0.163  Sum_probs=64.0

Q ss_pred             HhcccccCCCcceeeccCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc-c------
Q psy8709         193 ILNNKSLFNNKHVIDVGAGT-GILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED-V------  262 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGt-G~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~-~------  262 (319)
                      +.+.....++.+||=+|||. |.++..+++ .|+..|+.+|.++ -++.+    ++.|..   .++...-.+ .      
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a----~~~Ga~---~~i~~~~~~~~~~~~~~   92 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA----KALGAT---DCLNPRELDKPVQDVIT   92 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH----HHTTCS---EEECGGGCSSCHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHH----HHhCCC---cccCCccchhhhhhhHh
Confidence            34455677889999999995 888888888 5888999999999 44444    445542   222211111 1      


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCC-cEEEee
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPD-GVVCPN  307 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~~  307 (319)
                      ......+|+++-..-         .+..+....+.++|| |.+++-
T Consensus        93 ~~~~~G~d~vie~~G---------~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          93 ELTAGGVDYSLDCAG---------TAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             HHHTSCBSEEEESSC---------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             hhhcCCCcEEEEecc---------cchHHHHHHHHhhcCCeEEEec
Confidence            112367999984321         134567777899996 898843

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.003  Score=50.28  Aligned_cols=98  Identities=22%  Similarity=0.318  Sum_probs=62.0

Q ss_pred             HHhcccccCCCcceeeccC--CCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccc------
Q psy8709         192 AILNNKSLFNNKHVIDVGA--GTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV------  262 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~------  262 (319)
                      .+....+..++.+||-.|+  |.|.++..+++. |+ +|++++.++   ...+.+++.|..   .++.-.-.++      
T Consensus        19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~---~~~~~~~~~Ga~---~vi~~~~~~~~~~i~~   91 (174)
T d1yb5a2          19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTE---EGQKIVLQNGAH---EVFNHREVNYIDKIKK   91 (174)
T ss_dssp             HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSH---HHHHHHHHTTCS---EEEETTSTTHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccc---cccccccccCcc---cccccccccHHHHhhh
Confidence            3445566778899999996  366777788884 55 899998888   223344455652   2232221111      


Q ss_pred             ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         263 ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       263 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ......+|+|+....          ...+....+.|+|+|.++.
T Consensus        92 ~t~~~g~d~v~d~~g----------~~~~~~~~~~l~~~G~iv~  125 (174)
T d1yb5a2          92 YVGEKGIDIIIEMLA----------NVNLSKDLSLLSHGGRVIV  125 (174)
T ss_dssp             HHCTTCEEEEEESCH----------HHHHHHHHHHEEEEEEEEE
T ss_pred             hhccCCceEEeeccc----------HHHHHHHHhccCCCCEEEE
Confidence            123467999996432          1245666789999999884

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0019  Score=53.58  Aligned_cols=41  Identities=15%  Similarity=0.108  Sum_probs=32.5

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      ....++.+|||+|||+|.++...+..++.+|+++|+++...
T Consensus        56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l   96 (222)
T d2ex4a1          56 PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL   96 (222)
T ss_dssp             --CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHH
T ss_pred             cCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHh
Confidence            34567789999999999999887766778999999875443

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=96.08  E-value=0.0021  Score=53.40  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=31.0

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .+++++|||+|||+|.++...++.|. +|+|+|.++.
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~   53 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEE   53 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHH
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHH
Confidence            46788999999999999999988774 6999998753

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.08  E-value=0.0046  Score=51.12  Aligned_cols=45  Identities=22%  Similarity=0.328  Sum_probs=36.4

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCcc
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPI  184 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~  184 (319)
                      +.....+.++.+|||+|||+|.++..+++ .| ...|+++|+++...
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~  113 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC  113 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHH
T ss_pred             HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhH
Confidence            44556788999999999999999988885 45 67899999885433

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.06  E-value=0.003  Score=51.26  Aligned_cols=40  Identities=25%  Similarity=0.426  Sum_probs=32.2

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ...+++|||+|||+|..+...++.|. +|+|+|++......
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~   67 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMAN   67 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHH
Confidence            33556999999999999999998875 79999998654443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=96.05  E-value=0.0046  Score=51.69  Aligned_cols=45  Identities=22%  Similarity=0.422  Sum_probs=36.4

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCccc
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~  185 (319)
                      +.....+.++.+|||+|||+|.++..+++++ .+|+++|.++....
T Consensus        62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~  106 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYN  106 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHH
T ss_pred             HHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHH
Confidence            3445678899999999999999999988875 68999998754433

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.03  E-value=0.0033  Score=54.75  Aligned_cols=44  Identities=20%  Similarity=0.253  Sum_probs=36.0

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCc
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTP  183 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~  183 (319)
                      .+.....+.+|.+|||+|||.|.+++.++ +.| ..|+|++++...
T Consensus        52 ~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q   96 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQ   96 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHH
T ss_pred             HHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHH
Confidence            45566789999999999999999999877 555 488999988654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.00066  Score=54.11  Aligned_cols=96  Identities=17%  Similarity=0.166  Sum_probs=59.6

Q ss_pred             cccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEc-Ccccc-ccCCCceeE
Q psy8709         197 KSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHK-LLEDV-ELPVESVDI  271 (319)
Q Consensus       197 l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~-d~~~~-~~~~~~fD~  271 (319)
                      ....++.+||-+|+| .|.++..+++ .|+ +|+++|.++ .++.+++    .|. +  .++.. +-.+. ....+.||+
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~----lGa-~--~~i~~~~~~~~~~~~~~~~d~   94 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGA-D--HYIATLEEGDWGEKYFDTFDL   94 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTC-S--EEEEGGGTSCHHHHSCSCEEE
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhc----cCC-c--EEeeccchHHHHHhhhcccce
Confidence            466788999999998 6777777777 465 899999999 6666553    443 2  22222 11111 122367999


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      |+.......   .    ..+....+.|+|+|++++-
T Consensus        95 vi~~~~~~~---~----~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          95 IVVCASSLT---D----IDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             EEECCSCST---T----CCTTTGGGGEEEEEEEEEC
T ss_pred             EEEEecCCc---c----chHHHHHHHhhccceEEEe
Confidence            885321110   0    0123456799999998843

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.97  E-value=0.0038  Score=53.55  Aligned_cols=107  Identities=19%  Similarity=0.306  Sum_probs=64.3

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH--HHHHHHHh---ccc----------ccC
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT--ESYKSAIL---NNK----------SLF  200 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~--~~~~~~i~---~~l----------~~~  200 (319)
                      ..|.....+.||.+|||+|||+|.+++..|+. | ..+|+++|++......  +++.....   .+.          ...
T Consensus        86 s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~  165 (264)
T d1i9ga_          86 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP  165 (264)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred             HHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc
Confidence            34555677899999999999999999998854 6 6799999998655444  33333211   111          011


Q ss_pred             CC---cceeeccCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHH
Q psy8709         201 NN---KHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIR  244 (319)
Q Consensus       201 ~~---~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~  244 (319)
                      .+   ..+||+..-.-.+.....- .+.+.+....++- .+....+.++
T Consensus       166 ~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~  214 (264)
T d1i9ga_         166 DGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALR  214 (264)
T ss_dssp             TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHH
Confidence            11   2467776555444332222 2333566655555 5555555564

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.93  E-value=0.0039  Score=54.11  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=36.8

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCc
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTP  183 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~  183 (319)
                      +.+.....+.+|.+|||+|||.|.+++.+++.-+.+|.++.+++..
T Consensus        52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q   97 (285)
T d1kpga_          52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQ   97 (285)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHH
T ss_pred             HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHH
Confidence            4455667899999999999999999998764434699999987543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=95.70  E-value=0.0062  Score=52.37  Aligned_cols=50  Identities=24%  Similarity=0.381  Sum_probs=36.6

Q ss_pred             HHHHHHhc-CCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCccc
Q psy8709         136 YKSAILNN-NSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       136 ~~~~i~~n-~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~  185 (319)
                      |..++... ..+.++.+|||+|||+|.++...+.. + ...++|+|+++....
T Consensus        14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~   66 (281)
T d2gh1a1          14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA   66 (281)
T ss_dssp             HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHH
T ss_pred             HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhh
Confidence            34444333 34567889999999999999998864 4 578999999865443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.66  E-value=0.005  Score=48.42  Aligned_cols=94  Identities=18%  Similarity=0.108  Sum_probs=57.5

Q ss_pred             ccccCCCcceeeccCC-CchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----ccCCCc
Q psy8709         196 NKSLFNNKHVIDVGAG-TGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----ELPVES  268 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcG-tG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~~~~~~  268 (319)
                      .....++.+||=+|+| .|.++..+++....+|+++|.++ -++.+    ++.|. +  .++...-++.     ....+.
T Consensus        22 ~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a----~~~Ga-~--~~i~~~~~~~~~~~~~~~~g~   94 (166)
T d1llua2          22 QTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELA----RKLGA-S--LTVNARQEDPVEAIQRDIGGA   94 (166)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHTTC-S--EEEETTTSCHHHHHHHHHSSE
T ss_pred             HhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhh----hccCc-c--ccccccchhHHHHHHHhhcCC
Confidence            3466778899999987 56667777774235999999998 55444    44554 2  2333222221     111234


Q ss_pred             eeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         269 VDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       269 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      ++.|++...          ...+....+.|+|||++++
T Consensus        95 ~~~i~~~~~----------~~~~~~~~~~l~~~G~iv~  122 (166)
T d1llua2          95 HGVLVTAVS----------NSAFGQAIGMARRGGTIAL  122 (166)
T ss_dssp             EEEEECCSC----------HHHHHHHHTTEEEEEEEEE
T ss_pred             ccccccccc----------chHHHHHHHHhcCCcEEEE
Confidence            555554322          2345667789999999885

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0057  Score=51.02  Aligned_cols=41  Identities=32%  Similarity=0.563  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHh-cC-CceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQ-AG-AAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~-~g-a~~V~avd~d~~~~~  185 (319)
                      .+.+|.+|||+|||+|..+..+++ .| ..+|+++|.+.....
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~  115 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVD  115 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHH
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHH
Confidence            578999999999999999887775 45 779999999865443

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0049  Score=54.42  Aligned_cols=48  Identities=25%  Similarity=0.425  Sum_probs=38.8

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhc-C-CceEEeeecCCCcccH
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQA-G-AAKVFAIEKSGTPIRT  186 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~-g-a~~V~avd~d~~~~~~  186 (319)
                      .|.....+.+|.+|||+|||+|.+++.+|+. | ..+|+++|++......
T Consensus        89 ~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~  138 (324)
T d2b25a1          89 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDL  138 (324)
T ss_dssp             HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHH
Confidence            4445567899999999999999999998854 5 6799999998655443

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.61  E-value=0.0048  Score=54.42  Aligned_cols=41  Identities=41%  Similarity=0.446  Sum_probs=35.5

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++++|||++||+|.+++.++..|+.+|+++|+++.....
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~  183 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIET  183 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHH
Confidence            45799999999999999999999999999999998654333

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.58  E-value=0.0069  Score=48.31  Aligned_cols=48  Identities=19%  Similarity=0.315  Sum_probs=36.1

Q ss_pred             HhcccccCCCcceeeccCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHH
Q psy8709         193 ILNNKSLFNNKHVIDVGAGT-GILSIFAAQ-AGAAKVFAIEKSD-IAYETI  240 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGt-G~ls~~la~-~g~~~V~gvD~s~-~i~~a~  240 (319)
                      +.+..+..++.+||=+|||. |.++..+++ .|..+|+++|.++ -++.++
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~   69 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI   69 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence            44556778889999999984 455566666 5888999999999 555554

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.32  E-value=0.011  Score=46.77  Aligned_cols=93  Identities=16%  Similarity=0.135  Sum_probs=59.3

Q ss_pred             cCCCcceeeccCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----cCCCcee
Q psy8709         199 LFNNKHVIDVGAGT-GILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----LPVESVD  270 (319)
Q Consensus       199 ~~~~~~VLDiGcGt-G~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----~~~~~fD  270 (319)
                      ..++.+||-+|+|. |.++..+++ .|...|+++|.++ -++.++    +.+. +  +++..+-+...     .....+|
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~----~~ga-~--~~i~~~~~~~~~~~~~~~~~g~d  102 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE----RLGA-D--HVVDARRDPVKQVMELTRGRGVN  102 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH----HTTC-S--EEEETTSCHHHHHHHHTTTCCEE
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh----hccc-c--eeecCcccHHHHHHHhhCCCCce
Confidence            46778999999984 455566666 5888999999998 444443    4443 2  33433322111     1235699


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      +|+-....         ...+....+.|++||++++-
T Consensus       103 ~vid~~g~---------~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         103 VAMDFVGS---------QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             EEEESSCC---------HHHHHHGGGGEEEEEEEEEC
T ss_pred             EEEEecCc---------chHHHHHHHHHhCCCEEEEE
Confidence            99854321         23467778899999999853

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=95.28  E-value=0.014  Score=48.90  Aligned_cols=45  Identities=24%  Similarity=0.339  Sum_probs=37.6

Q ss_pred             HHHHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         137 KSAILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       137 ~~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      ...|.......++++||++|||+|.++...+..+ .+++++|+|..
T Consensus        10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~   54 (235)
T d1qama_          10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHK   54 (235)
T ss_dssp             HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHH
T ss_pred             HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccc
Confidence            3445566778899999999999999999999765 68999999853

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.25  E-value=0.0064  Score=47.95  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=61.1

Q ss_pred             ccccCCCcceeeccCC--CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc------cC
Q psy8709         196 NKSLFNNKHVIDVGAG--TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE------LP  265 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcG--tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~------~~  265 (319)
                      ..+..++.+||=+||+  .|.++..+++ .|...|+++|.++ -.+.++    +.|. +  .++..+-.+..      ..
T Consensus        22 ~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~----~~Ga-~--~~i~~~~~~~~~~~~~~~~   94 (170)
T d1jvba2          22 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK----RAGA-D--YVINASMQDPLAEIRRITE   94 (170)
T ss_dssp             HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH----HHTC-S--EEEETTTSCHHHHHHHHTT
T ss_pred             HhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH----HcCC-c--eeeccCCcCHHHHHHHHhh
Confidence            3567788899999973  5566666666 5778999999999 544444    4453 1  23333332221      12


Q ss_pred             CCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         266 VESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       266 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .+.||+|+.....         ...+....+.++|||.++.-
T Consensus        95 ~~~~d~vid~~g~---------~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          95 SKGVDAVIDLNNS---------EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             TSCEEEEEESCCC---------HHHHTTGGGGEEEEEEEEEC
T ss_pred             cccchhhhccccc---------chHHHhhhhhcccCCEEEEe
Confidence            3569999864321         23456667899999998844

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=95.22  E-value=0.11  Score=44.75  Aligned_cols=109  Identities=8%  Similarity=0.043  Sum_probs=77.7

Q ss_pred             cceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCC--CCcEEEEEcCccccc--------cCCCceeEE
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKY--DSQIEVYHKLLEDVE--------LPVESVDII  272 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~--~~~i~~i~~d~~~~~--------~~~~~fD~I  272 (319)
                      ..|+.+|||--.-...+...+..+++-+|..++++.-++.+...+.  ..+..++..|+.+..        +..+.--++
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl~  170 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTAW  170 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEEE
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEEE
Confidence            4566799998776655533344588899987777777777877654  346677888776421        122445677


Q ss_pred             EeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         273 ISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       273 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      +++.+.+++. ++....+++.+.....||+.++++..+..
T Consensus       171 i~EGvl~YL~-~~~~~~ll~~i~~~~~~GS~l~~d~~~~~  209 (297)
T d2uyoa1         171 LAEGLLMYLP-ATAQDGLFTEIGGLSAVGSRIAVETSPLH  209 (297)
T ss_dssp             EECSCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred             EEccccccCC-HHHHHHHHHHHHHhCCCCCEEEEEecccc
Confidence            7888877764 46789999999999999999999876543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.21  E-value=0.0087  Score=47.80  Aligned_cols=50  Identities=16%  Similarity=0.345  Sum_probs=37.0

Q ss_pred             HhcccccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q psy8709         193 ILNNKSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDI  242 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~  242 (319)
                      +.+..+..++.+|+=+||| .|.++..+++ .|+.+|+++|.++ -++.|++.
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            4445567788999999998 4455666666 5778999999999 66666543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.20  E-value=0.016  Score=48.19  Aligned_cols=56  Identities=18%  Similarity=0.237  Sum_probs=46.3

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIR  244 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~  244 (319)
                      ..+.+.++.... .+|..|||.-||+|..+..+.+.| .+.+|+|+++ .++.|++++.
T Consensus       199 ~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence            455666665554 567899999999999999988886 5999999999 9999998875

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=95.18  E-value=0.013  Score=51.43  Aligned_cols=41  Identities=20%  Similarity=0.153  Sum_probs=36.4

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..+|++|||+.||+|.+++.++..|++.|+++|++......
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~  182 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRAL  182 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHH
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHH
Confidence            55899999999999999999999999999999998765444

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.93  E-value=0.009  Score=46.74  Aligned_cols=94  Identities=17%  Similarity=0.119  Sum_probs=55.0

Q ss_pred             cccCCCcceeeccCCC-chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-----ccCCCce
Q psy8709         197 KSLFNNKHVIDVGAGT-GILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-----ELPVESV  269 (319)
Q Consensus       197 l~~~~~~~VLDiGcGt-G~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-----~~~~~~f  269 (319)
                      ....++.+||=.|+|. |.+...+++....+|+++|.++ -++.    ++..|..   .++...-.+.     ....+.+
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~----~k~~Ga~---~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLEL----AKELGAD---LVVNPLKEDAAKFMKEKVGGVH   95 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHH----HHHTTCS---EEECTTTSCHHHHHHHHHSSEE
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhh----hhhcCcc---eecccccchhhhhcccccCCCc
Confidence            4566788999999984 5555666664334899999999 5444    4445541   1222111111     1122445


Q ss_pred             eEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         270 DIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       270 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      |+|++...          ...+....+.|+|||.+++-
T Consensus        96 ~~v~~~~~----------~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          96 AAVVTAVS----------KPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             EEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             eEEeecCC----------HHHHHHHHHHhccCCceEec
Confidence            55543221          23456677789999999854

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.88  E-value=0.0078  Score=49.90  Aligned_cols=43  Identities=21%  Similarity=0.397  Sum_probs=35.2

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      +.....+.++.+||++|||||..+..++++-...|+++|.++.
T Consensus        70 ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~  112 (215)
T d1jg1a_          70 MLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPE  112 (215)
T ss_dssp             HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHH
T ss_pred             HHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHH
Confidence            3445578899999999999999999988664477999998843

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.012  Score=50.51  Aligned_cols=41  Identities=17%  Similarity=0.430  Sum_probs=33.4

Q ss_pred             CCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccHHH
Q psy8709         148 NNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRTES  188 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~~~  188 (319)
                      .+.+|||+|||||.+++..+ ......++++|+++.......
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~  149 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ  149 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH
T ss_pred             cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH
Confidence            45679999999999999987 455889999999876655533

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=94.82  E-value=0.011  Score=47.46  Aligned_cols=36  Identities=31%  Similarity=0.273  Sum_probs=33.3

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .++.+|||+-||||.++++|...||..++.+|.+..
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~   77 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKT   77 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHH
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccc
Confidence            477899999999999999999999999999999854

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.013  Score=49.92  Aligned_cols=38  Identities=26%  Similarity=0.359  Sum_probs=31.4

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCCCcc
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSGTPI  184 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~~~~  184 (319)
                      .++.+|||+|||+|.++...+..+ ...++|+|++....
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~  121 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI  121 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhh
Confidence            467899999999999998888665 67899999986443

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=94.65  E-value=0.016  Score=48.89  Aligned_cols=40  Identities=18%  Similarity=0.103  Sum_probs=32.1

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .....++.+|||+|||+|.++...+..+...|.++|.+..
T Consensus        88 ~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~  127 (254)
T d1xtpa_          88 SLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH  127 (254)
T ss_dssp             TSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH
T ss_pred             hCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHH
Confidence            3445677899999999999998877666679999998744

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=94.59  E-value=0.012  Score=47.54  Aligned_cols=31  Identities=19%  Similarity=0.355  Sum_probs=23.8

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .++.+|||+|||+|.+....+     .++|+|.++.
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~   65 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSER   65 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHH
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChh
Confidence            456789999999999877664     3578887643

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=94.52  E-value=0.011  Score=49.92  Aligned_cols=44  Identities=25%  Similarity=0.360  Sum_probs=36.2

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcc
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPI  184 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~  184 (319)
                      |.......++++||++|||+|.++...++.+ .+++++|+|....
T Consensus        21 Iv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~   64 (245)
T d1yuba_          21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLF   64 (245)
T ss_dssp             HHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSS
T ss_pred             HHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccch
Confidence            3444567789999999999999999988774 6899999997543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.42  E-value=0.037  Score=47.43  Aligned_cols=72  Identities=17%  Similarity=0.095  Sum_probs=53.3

Q ss_pred             ceeeccCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccchhhh
Q psy8709         204 HVIDVGAGTGILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMGYFL  281 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~~~l  281 (319)
                      +|+|+-||.|.++.-+.+.|...+.++|+++   .|.+..+.|-   .-.++.+|+.++... ...+|+++..++...+
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~---~a~~~~~~N~---~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~f   74 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDK---SIWKTYESNH---SAKLIKGDISKISSDEFPKCDGIIGGPPCQSW   74 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCH---HHHHHHHHHC---CSEEEESCTTTSCGGGSCCCSEEEECCCCTTT
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCH---HHHHHHHHHC---CCCCccCChhhCCHhHcccccEEeeccccccc
Confidence            6899999999999988888987888999999   3444333332   135678999887432 3479999988766543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.14  E-value=0.023  Score=48.72  Aligned_cols=57  Identities=11%  Similarity=0.065  Sum_probs=45.9

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHh
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRK  245 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~  245 (319)
                      ..+.++++... ..++..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|.+++..
T Consensus       237 ~~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         237 AKLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             THHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred             hHHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence            45666666554 34678999999999999999988864 999999999 88888877654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=94.02  E-value=0.037  Score=46.35  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             hcCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecC
Q psy8709         142 NNNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKS  180 (319)
Q Consensus       142 ~n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d  180 (319)
                      ....+.+.++|||+|||+|.++...++.. ..+++++|..
T Consensus        74 ~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~  113 (253)
T d1tw3a2          74 AAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMA  113 (253)
T ss_dssp             HHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECT
T ss_pred             hhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCH
Confidence            34456677899999999999999988554 6778888863

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=94.01  E-value=0.013  Score=51.47  Aligned_cols=39  Identities=26%  Similarity=0.406  Sum_probs=32.7

Q ss_pred             CCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         147 FNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       147 ~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      .+|++|||++||+|.+++.++. |+++|+++|++......
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~  182 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRR  182 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHH
T ss_pred             hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHH
Confidence            4799999999999999998875 77899999998654333

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.95  E-value=0.041  Score=46.19  Aligned_cols=58  Identities=16%  Similarity=0.145  Sum_probs=48.1

Q ss_pred             HHHHHHHhcccccCCCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc
Q psy8709         187 ESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN  246 (319)
Q Consensus       187 ~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~  246 (319)
                      ..+.+.++.... .++..|||.-||+|..+..+.+.| .+.+|+|+++ ..+.|.+++...
T Consensus       194 ~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         194 AAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence            566666666553 577899999999999999988885 4999999999 999999888754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.93  E-value=0.017  Score=47.95  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=31.6

Q ss_pred             CCCCCCeEEEecCCCChhhHHHHhc-C------CceEEeeecCCCc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAAQA-G------AAKVFAIEKSGTP  183 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa~~-g------a~~V~avd~d~~~  183 (319)
                      .+.++.+||++|||||.++..++++ |      ..+|+++|.+...
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l  122 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAEL  122 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHH
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHH
Confidence            5779999999999999998887754 2      2479999987543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.91  E-value=0.032  Score=44.10  Aligned_cols=97  Identities=20%  Similarity=0.282  Sum_probs=59.3

Q ss_pred             HhcccccCCCcceeeccC--CCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc------
Q psy8709         193 ILNNKSLFNNKHVIDVGA--GTGILSIFAAQA-GAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE------  263 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~------  263 (319)
                      +....+..++.+||=.|+  |.|.++..+++. |. +++++.-++   .-.+.++..|. +  .++...-.++.      
T Consensus        17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~---~~~~~l~~~Ga-~--~vi~~~~~~~~~~v~~~   89 (183)
T d1pqwa_          17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSD---AKREMLSRLGV-E--YVGDSRSVDFADEILEL   89 (183)
T ss_dssp             HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSH---HHHHHHHTTCC-S--EEEETTCSTHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeeccc---ccccccccccc-c--ccccCCccCHHHHHHHH
Confidence            345556778889998773  366777777774 55 888877766   22344555665 2  22332222221      


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      .....||+|+.....          ..+..+.++|+|+|+++.
T Consensus        90 t~~~g~d~v~d~~g~----------~~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_          90 TDGYGVDVVLNSLAG----------EAIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             TTTCCEEEEEECCCT----------HHHHHHHHTEEEEEEEEE
T ss_pred             hCCCCEEEEEecccc----------hHHHHHHHHhcCCCEEEE
Confidence            123679999964321          234556689999999885

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.048  Score=42.62  Aligned_cols=95  Identities=25%  Similarity=0.227  Sum_probs=58.2

Q ss_pred             ccccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc-ccCCCceeE
Q psy8709         196 NKSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV-ELPVESVDI  271 (319)
Q Consensus       196 ~l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~-~~~~~~fD~  271 (319)
                      ..+..++.+||=+|+| .|.++..+++ .|+ +++++|.++ -.+.+    ++.|. +  .++...-.+. ....+.+|+
T Consensus        25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a----~~lGa-d--~~i~~~~~~~~~~~~~~~D~   96 (168)
T d1uufa2          25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAA----KALGA-D--EVVNSRNADEMAAHLKSFDF   96 (168)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHH----HHHTC-S--EEEETTCHHHHHTTTTCEEE
T ss_pred             HhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHH----hccCC-c--EEEECchhhHHHHhcCCCce
Confidence            3567788999999987 5667777777 455 777898888 44444    34443 2  2333222211 122357999


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ++-....     .    ..+....+.|+|+|++++-
T Consensus        97 vid~~g~-----~----~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          97 ILNTVAA-----P----HNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             EEECCSS-----C----CCHHHHHTTEEEEEEEEEC
T ss_pred             eeeeeec-----c----hhHHHHHHHHhcCCEEEEe
Confidence            9853221     1    1234556799999998854

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.78  E-value=0.027  Score=49.07  Aligned_cols=40  Identities=30%  Similarity=0.283  Sum_probs=33.4

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~  186 (319)
                      ..++++|||+.||||.+++.++..|+ +|+++|.+......
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~  169 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGW  169 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHH
Confidence            34688999999999999999999888 79999987554443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.72  E-value=0.062  Score=43.42  Aligned_cols=47  Identities=9%  Similarity=0.061  Sum_probs=35.2

Q ss_pred             HHHHhcCCCCCCCeEEEecCCCChhhHHHH-hc-CCceEEeeecCCCcc
Q psy8709         138 SAILNNNSLFNNKHVIDVGAGTGILSIFAA-QA-GAAKVFAIEKSGTPI  184 (319)
Q Consensus       138 ~~i~~n~~~~~~~~vLD~G~GsG~l~i~aa-~~-ga~~V~avd~d~~~~  184 (319)
                      +++.......++.+|||.+||+|.+.+.+. .. ....++++|+++...
T Consensus         9 ~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~   57 (223)
T d2ih2a1           9 DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL   57 (223)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC
T ss_pred             HHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH
Confidence            344444556688999999999998876665 33 477899999987643

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.70  E-value=0.1  Score=42.36  Aligned_cols=38  Identities=29%  Similarity=0.249  Sum_probs=30.2

Q ss_pred             CCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         149 NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       149 ~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      +..|||+|||+|...+..|+. ....++|+|+.......
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~   68 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVT   68 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHH
Confidence            347999999999999888754 58889999997554443

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.59  E-value=0.019  Score=48.42  Aligned_cols=58  Identities=19%  Similarity=0.100  Sum_probs=43.5

Q ss_pred             EEEEEcCcccc--ccCCCceeEEEeccchhhh--------cchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         252 IEVYHKLLEDV--ELPVESVDIIISEWMGYFL--------LFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       252 i~~i~~d~~~~--~~~~~~fD~Iis~~~~~~l--------~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                      -.++.+|..+.  .+|++++|+|++++++..-        .+.......+.++.|+|||||.+++...
T Consensus         5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            35777887665  5788999999999986421        1124467788999999999999987543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.58  E-value=0.065  Score=41.88  Aligned_cols=98  Identities=17%  Similarity=0.135  Sum_probs=59.8

Q ss_pred             HHhcccccCCCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc-cc-c----
Q psy8709         192 AILNNKSLFNNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL-ED-V----  262 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~-~~-~----  262 (319)
                      .+.+..+..++.+||=.||| .|.++..+++ .|...|+++|.++ -.+.++    +.|..   .++..+- .+ .    
T Consensus        19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak----~lGa~---~~i~~~~~~~~~~~~~   91 (176)
T d2fzwa2          19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK----EFGAT---ECINPQDFSKPIQEVL   91 (176)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HHTCS---EEECGGGCSSCHHHHH
T ss_pred             HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH----HhCCc---EEEeCCchhhHHHHHH
Confidence            34455677889999999987 4455566666 5888999999998 554444    44432   1222211 11 1    


Q ss_pred             -ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         263 -ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       263 -~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                       ......+|+|+-..-.         ...++....++++||.++
T Consensus        92 ~~~~~~g~D~vid~~G~---------~~~~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2          92 IEMTDGGVDYSFECIGN---------VKVMRAALEACHKGWGVS  126 (176)
T ss_dssp             HHHTTSCBSEEEECSCC---------HHHHHHHHHTBCTTTCEE
T ss_pred             HHHcCCCCcEeeecCCC---------HHHHHHHHHhhcCCceeE
Confidence             1123579999954321         234566677889987655

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.36  E-value=0.11  Score=40.84  Aligned_cols=99  Identities=14%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             HHhcccccCCCcceeeccCCC--chHHHHHHHcCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccc------c
Q psy8709         192 AILNNKSLFNNKHVIDVGAGT--GILSIFAAQAGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDV------E  263 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~------~  263 (319)
                      .+.+..+..++++||=.|++.  |..+..+++....+|+++.-++   ...+.++..|. +  +++..+-++.      .
T Consensus        20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~---~~~~~~~~~Ga-~--~vi~~~~~~~~~~~~~~   93 (182)
T d1v3va2          20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD---EKIAYLKQIGF-D--AAFNYKTVNSLEEALKK   93 (182)
T ss_dssp             HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH---HHHHHHHHTTC-S--EEEETTSCSCHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCH---HHHHHHHhhhh-h--hhcccccccHHHHHHHH
Confidence            344556677889999888754  5667777775345999999888   23344455554 2  2232222221      1


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      .....+|+|+-..-          ...+....+.|+|+|.++.
T Consensus        94 ~~~~Gvd~v~D~vG----------~~~~~~~~~~l~~~G~~v~  126 (182)
T d1v3va2          94 ASPDGYDCYFDNVG----------GEFLNTVLSQMKDFGKIAI  126 (182)
T ss_dssp             HCTTCEEEEEESSC----------HHHHHHHGGGEEEEEEEEE
T ss_pred             hhcCCCceeEEecC----------chhhhhhhhhccCCCeEEe
Confidence            12367999985321          2356778899999999885

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=93.09  E-value=0.034  Score=47.55  Aligned_cols=43  Identities=28%  Similarity=0.429  Sum_probs=35.3

Q ss_pred             CCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHH
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYK  190 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~  190 (319)
                      ...+++|+|||+|.+++.+++....+|+++|+++.+......+
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~N  152 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKN  152 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHH
T ss_pred             cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHH
Confidence            3568999999999999999988888999999987665554333

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.046  Score=46.15  Aligned_cols=41  Identities=15%  Similarity=0.214  Sum_probs=33.9

Q ss_pred             HHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCC
Q psy8709         140 ILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSG  181 (319)
Q Consensus       140 i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~  181 (319)
                      |.......+++.||++|+|+|.++...++.+ .+++++|+|.
T Consensus        13 Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~   53 (252)
T d1qyra_          13 IVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDR   53 (252)
T ss_dssp             HHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCH
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEecc
Confidence            3334456789999999999999999998765 6799999984

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.07  Score=45.61  Aligned_cols=43  Identities=28%  Similarity=0.420  Sum_probs=36.0

Q ss_pred             HHHhcCCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCC
Q psy8709         139 AILNNNSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGT  182 (319)
Q Consensus       139 ~i~~n~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~  182 (319)
                      .|.......++++||++|+|.|.++...++.+ .+++++|+|..
T Consensus        12 kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~   54 (278)
T d1zq9a1          12 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPR   54 (278)
T ss_dssp             HHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHH
T ss_pred             HHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccc
Confidence            34445567789999999999999999999876 58999999854

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=92.95  E-value=0.076  Score=45.77  Aligned_cols=72  Identities=17%  Similarity=0.080  Sum_probs=52.9

Q ss_pred             CCcceeeccCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccC-CCceeEEEeccch
Q psy8709         201 NNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELP-VESVDIIISEWMG  278 (319)
Q Consensus       201 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~-~~~fD~Iis~~~~  278 (319)
                      .+.+|||+-||-|.++..+.+.|...+.++|+++ .++.-+.|..     +   ..++|+.++... ...+|+++..++.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~-----~---~~~~Di~~~~~~~~~~~Dll~ggpPC   81 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG-----E---KPEGDITQVNEKTIPDHDILCAGFPC   81 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS-----C---CCBSCGGGSCGGGSCCCSEEEEECCC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC-----C---CCcCchhcCchhhcceeeeeeccccc
Confidence            3479999999999999999999987888899999 5555444431     1   125788776432 2479999988765


Q ss_pred             hh
Q psy8709         279 YF  280 (319)
Q Consensus       279 ~~  280 (319)
                      ..
T Consensus        82 q~   83 (327)
T d2c7pa1          82 QA   83 (327)
T ss_dssp             TT
T ss_pred             ch
Confidence            43

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.036  Score=46.66  Aligned_cols=42  Identities=14%  Similarity=0.135  Sum_probs=33.5

Q ss_pred             CCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCcccHHHH
Q psy8709         148 NNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIRTESY  189 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~~~~~  189 (319)
                      +..++||+|||+|.+++..+ +....+++|+|+++........
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~  103 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK  103 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHH
Confidence            45689999999999999877 5558899999998766555333

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.73  E-value=0.013  Score=46.42  Aligned_cols=93  Identities=14%  Similarity=0.131  Sum_probs=56.0

Q ss_pred             ccccCCCcceeeccC-C-CchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeE
Q psy8709         196 NKSLFNNKHVIDVGA-G-TGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDI  271 (319)
Q Consensus       196 ~l~~~~~~~VLDiGc-G-tG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~  271 (319)
                      ..+..++++||=.|+ | .|.+...+++. |. +|++++.++ -.+.+    ++.|.. .+ +-..+..........+|+
T Consensus        22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~----~~lGa~-~~-i~~~~~~~~~~~~~g~D~   94 (171)
T d1iz0a2          22 RAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALP----LALGAE-EA-ATYAEVPERAKAWGGLDL   94 (171)
T ss_dssp             HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHH----HHTTCS-EE-EEGGGHHHHHHHTTSEEE
T ss_pred             HhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccc----cccccc-ee-eehhhhhhhhhccccccc
Confidence            356778899998885 3 45677777774 55 899999887 44443    445542 22 111111111112357999


Q ss_pred             EEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         272 IISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       272 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      |+- ..+      +.    +....+.|+|+|.++.
T Consensus        95 v~d-~~G------~~----~~~~~~~l~~~G~~v~  118 (171)
T d1iz0a2          95 VLE-VRG------KE----VEESLGLLAHGGRLVY  118 (171)
T ss_dssp             EEE-CSC------TT----HHHHHTTEEEEEEEEE
T ss_pred             ccc-ccc------hh----HHHHHHHHhcCCcEEE
Confidence            985 222      11    3456679999999884

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.053  Score=42.62  Aligned_cols=97  Identities=14%  Similarity=0.109  Sum_probs=60.2

Q ss_pred             HhcccccCCCcceeeccCC--CchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc------
Q psy8709         193 ILNNKSLFNNKHVIDVGAG--TGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE------  263 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcG--tG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~------  263 (319)
                      +.+..+..++++||=.|+|  .|.+...+++....+|++++.++ -.+.++    +.|- +  +++..+-+++.      
T Consensus        20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~----~lGa-~--~vi~~~~~d~~~~v~~~   92 (179)
T d1qora2          20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL----KAGA-W--QVINYREEDLVERLKEI   92 (179)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----HHTC-S--EEEETTTSCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH----hcCC-e--EEEECCCCCHHHHHHHH
Confidence            3445567788899888666  56777788885334999999999 554443    4454 2  23332222221      


Q ss_pred             cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         264 LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       264 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      .....+|+|+.....      +    .+....+.++|+|.++.
T Consensus        93 t~g~g~d~v~d~~g~------~----~~~~~~~~l~~~G~~v~  125 (179)
T d1qora2          93 TGGKKVRVVYDSVGR------D----TWERSLDCLQRRGLMVS  125 (179)
T ss_dssp             TTTCCEEEEEECSCG------G----GHHHHHHTEEEEEEEEE
T ss_pred             hCCCCeEEEEeCccH------H----HHHHHHHHHhcCCeeee
Confidence            123679998864321      1    23455679999998764

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=92.04  E-value=0.034  Score=46.04  Aligned_cols=56  Identities=16%  Similarity=0.049  Sum_probs=40.9

Q ss_pred             EEEEcCcccc--ccCCCceeEEEeccchhhhc-----------chhhHHHHHHHHhcccCCCcEEEeec
Q psy8709         253 EVYHKLLEDV--ELPVESVDIIISEWMGYFLL-----------FETMIDSVIDARNRFLKPDGVVCPNR  308 (319)
Q Consensus       253 ~~i~~d~~~~--~~~~~~fD~Iis~~~~~~l~-----------~~~~~~~~l~~~~r~LkpgG~li~~~  308 (319)
                      ++++||..++  .+|++++|+|++++++..-.           ........+.++.|+|+|||.+++..
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence            3678888764  47789999999999863210           11235568899999999999887543

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.06  Score=46.50  Aligned_cols=74  Identities=18%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             cceeeccCCCchHHHHHHHcCCC--EEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc---CCCceeEEEeccc
Q psy8709         203 KHVIDVGAGTGILSIFAAQAGAA--KVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVEL---PVESVDIIISEWM  277 (319)
Q Consensus       203 ~~VLDiGcGtG~ls~~la~~g~~--~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~---~~~~fD~Iis~~~  277 (319)
                      .+|+|+.||.|.++.-+.+.|..  -+.++|+++   .|.+..+.|-  +...++.+|+.++..   +...+|+++..++
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~---~a~~~~~~n~--~~~~~~~~di~~~~~~~~~~~~~Dll~ggpP   77 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNT---VANEVYKYNF--PHTQLLAKTIEGITLEEFDRLSFDMILMSPP   77 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCH---HHHHHHHHHC--TTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCH---HHHHHHHHHC--CCCCcccCchhhCCHhHcCCCCccEEEeecc
Confidence            57999999999999888777763  478999999   3333333332  345677788887642   2246899998877


Q ss_pred             hhhh
Q psy8709         278 GYFL  281 (319)
Q Consensus       278 ~~~l  281 (319)
                      ...+
T Consensus        78 Cq~f   81 (343)
T d1g55a_          78 CQPF   81 (343)
T ss_dssp             ----
T ss_pred             cccc
Confidence            5543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=91.79  E-value=0.05  Score=46.44  Aligned_cols=62  Identities=18%  Similarity=0.130  Sum_probs=46.6

Q ss_pred             cEEEEEcCcccc--ccCCCceeEEEeccchhhh-----------cchhhHHHHHHHHhcccCCCcEEEeecCcce
Q psy8709         251 QIEVYHKLLEDV--ELPVESVDIIISEWMGYFL-----------LFETMIDSVIDARNRFLKPDGVVCPNRFTLS  312 (319)
Q Consensus       251 ~i~~i~~d~~~~--~~~~~~fD~Iis~~~~~~l-----------~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~  312 (319)
                      +-++++||..+.  .++++++|+|+.++++...           .....+...+.+++++|+|+|.+++.....+
T Consensus        12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~   86 (320)
T d1booa_          12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAY   86 (320)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCE
T ss_pred             CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchh
Confidence            447899998764  4678999999999986421           0123367789999999999999998766554

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.24  Score=39.09  Aligned_cols=94  Identities=11%  Similarity=0.123  Sum_probs=56.9

Q ss_pred             ccCCC--cceeecc--CCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHhcCCCCcEEEEEcCccccc-----cCCC
Q psy8709         198 SLFNN--KHVIDVG--AGTGILSIFAAQ-AGAAKVFAIEKSDIAYETIDIIRKNKYDSQIEVYHKLLEDVE-----LPVE  267 (319)
Q Consensus       198 ~~~~~--~~VLDiG--cGtG~ls~~la~-~g~~~V~gvD~s~~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----~~~~  267 (319)
                      +..++  ++||-.|  .|.|..+..+++ .|+..|+++..++  +...+..+..|..   .++...-+++.     ...+
T Consensus        25 ~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~--e~~~~l~~~~gad---~vi~~~~~~~~~~~~~~~~~   99 (187)
T d1vj1a2          25 HISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQ--EKCLFLTSELGFD---AAVNYKTGNVAEQLREACPG   99 (187)
T ss_dssp             CCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSH--HHHHHHHHHSCCS---EEEETTSSCHHHHHHHHCTT
T ss_pred             CCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchH--HHHhhhhhcccce---EEeeccchhHHHHHHHHhcc
Confidence            34444  6788876  468899999999 5777888877766  0112223344432   23333322221     1235


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      .+|+|+-...          ...+....+.|+|+|+++.
T Consensus       100 GvDvv~D~vG----------g~~~~~~~~~l~~~G~iv~  128 (187)
T d1vj1a2         100 GVDVYFDNVG----------GDISNTVISQMNENSHIIL  128 (187)
T ss_dssp             CEEEEEESSC----------HHHHHHHHTTEEEEEEEEE
T ss_pred             CceEEEecCC----------chhHHHHhhhccccccEEE
Confidence            7999985332          1345677889999999984

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.49  E-value=0.096  Score=42.52  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=30.3

Q ss_pred             CCeEEEecCCCChhhHHHHhc-CCceEEeeecCCCcccH
Q psy8709         149 NKHVIDVGAGTGILSIFAAQA-GAAKVFAIEKSGTPIRT  186 (319)
Q Consensus       149 ~~~vLD~G~GsG~l~i~aa~~-ga~~V~avd~d~~~~~~  186 (319)
                      ...+||+|||+|-..+..|+. ....+.|+|+.......
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~   70 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSY   70 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHH
Confidence            347999999999999988855 58889999998654443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.40  E-value=0.038  Score=43.65  Aligned_cols=96  Identities=17%  Similarity=0.132  Sum_probs=60.9

Q ss_pred             CCcceeeccCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccc
Q psy8709         201 NNKHVIDVGAG-TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWM  277 (319)
Q Consensus       201 ~~~~VLDiGcG-tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~  277 (319)
                      ++.+|+-+|+| .|..+...+. .|+ +|+.+|.+. .+++......     .+++....+-+.+.......|+||....
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~~~aDivI~aal  104 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAVAEADLLIGAVL  104 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhhccCcEEEEeee
Confidence            45799999999 4566666666 455 999999999 6665554432     3455555554444322356899997543


Q ss_pred             hhhhcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         278 GYFLLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       278 ~~~l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                      .   .....+.-+-+++.+.+|||.+++
T Consensus       105 i---pG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         105 V---PGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             C---TTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             c---CCcccCeeecHHHHhhcCCCcEEE
Confidence            2   121222223456677889999888

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=91.00  E-value=0.15  Score=42.58  Aligned_cols=38  Identities=24%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             cCCCCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecC
Q psy8709         143 NNSLFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKS  180 (319)
Q Consensus       143 n~~~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d  180 (319)
                      ...+...++|||+|||+|.+....++.- ..+++++|+.
T Consensus        76 ~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp  114 (256)
T d1qzza2          76 AYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA  114 (256)
T ss_dssp             TSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred             cCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecCh
Confidence            3445566899999999999999988554 5678888863

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.37  Score=40.10  Aligned_cols=76  Identities=22%  Similarity=0.246  Sum_probs=58.4

Q ss_pred             CCCcceeeccCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----------cC
Q psy8709         200 FNNKHVIDVGAGTGI---LSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----------LP  265 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----------~~  265 (319)
                      .+++++|-.|++.|.   ++..+++.|+ +|+.++.++ .++.+.+.++..+...++.++..|+.+..          -.
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            456899999988873   4556667787 899999999 88888888887776668899999997642          11


Q ss_pred             CCceeEEEecc
Q psy8709         266 VESVDIIISEW  276 (319)
Q Consensus       266 ~~~fD~Iis~~  276 (319)
                      .+..|++|.+.
T Consensus        87 ~g~iD~lVnnA   97 (257)
T d1xg5a_          87 HSGVDICINNA   97 (257)
T ss_dssp             HCCCSEEEECC
T ss_pred             cCCCCEEEecc
Confidence            25799999765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.32  E-value=0.44  Score=36.59  Aligned_cols=90  Identities=13%  Similarity=0.122  Sum_probs=53.5

Q ss_pred             ceeeccCC--CchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchh
Q psy8709         204 HVIDVGAG--TGILSIFAAQAGA-AKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGY  279 (319)
Q Consensus       204 ~VLDiGcG--tG~ls~~la~~g~-~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~  279 (319)
                      +|+=+|||  .|.++..+.+.|. .+|+|+|.++ .++.+.    +.+..+   ....+....  .....|+|+...+. 
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~----~~~~~~---~~~~~~~~~--~~~~~dlIila~p~-   72 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID---EGTTSIAKV--EDFSPDFVMLSSPV-   72 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS---EEESCGGGG--GGTCCSEEEECSCH-
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH----Hhhcch---hhhhhhhhh--hccccccccccCCc-
Confidence            57778998  3355666666653 5899999999 555544    344311   111222211  22357888865432 


Q ss_pred             hhcchhhHHHHHHHHhcccCCCcEEEeecC
Q psy8709         280 FLLFETMIDSVIDARNRFLKPDGVVCPNRF  309 (319)
Q Consensus       280 ~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  309 (319)
                           .....++.++...++++.. +.+.+
T Consensus        73 -----~~~~~vl~~l~~~~~~~~i-i~d~~   96 (171)
T d2g5ca2          73 -----RTFREIAKKLSYILSEDAT-VTDQG   96 (171)
T ss_dssp             -----HHHHHHHHHHHHHSCTTCE-EEECC
T ss_pred             -----hhhhhhhhhhhcccccccc-ccccc
Confidence                 4566778888888887754 44443

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.28  Score=41.03  Aligned_cols=34  Identities=15%  Similarity=0.288  Sum_probs=22.2

Q ss_pred             CCCeEEEecCCCChhhHHHHh-----cCC--ceEEeeecCC
Q psy8709         148 NNKHVIDVGAGTGILSIFAAQ-----AGA--AKVFAIEKSG  181 (319)
Q Consensus       148 ~~~~vLD~G~GsG~l~i~aa~-----~ga--~~V~avd~d~  181 (319)
                      +..+|||+|||+|.++...+.     .+.  ..++++|.+.
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~   80 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSA   80 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcH
Confidence            334799999999998765542     222  2456776543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.16  E-value=0.22  Score=39.25  Aligned_cols=100  Identities=11%  Similarity=0.009  Sum_probs=58.0

Q ss_pred             HhcccccCCCcceeeccCC--CchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCC
Q psy8709         193 ILNNKSLFNNKHVIDVGAG--TGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVE  267 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcG--tG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~  267 (319)
                      +.......++.+||--|++  .|.++..+++....+|+++--++ -.+.++    ..|-...+. ...+..+.  ....+
T Consensus        23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~----~lGa~~vi~-~~~~~~~~~~~~~~~   97 (176)
T d1xa0a2          23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR----VLGAKEVLA-REDVMAERIRPLDKQ   97 (176)
T ss_dssp             HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH----HTTCSEEEE-CC---------CCSC
T ss_pred             HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH----hcccceeee-cchhHHHHHHHhhcc
Confidence            4444556667889988864  55777888875344899998887 544444    444421111 11111111  12346


Q ss_pred             ceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         268 SVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       268 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .||+|+-...+      .    .+....+.|+|||+++.-
T Consensus        98 gvD~vid~vgg------~----~~~~~l~~l~~~Griv~~  127 (176)
T d1xa0a2          98 RWAAAVDPVGG------R----TLATVLSRMRYGGAVAVS  127 (176)
T ss_dssp             CEEEEEECSTT------T----THHHHHHTEEEEEEEEEC
T ss_pred             CcCEEEEcCCc------h----hHHHHHHHhCCCceEEEe
Confidence            89998854322      1    245566799999999843

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.14  E-value=0.84  Score=34.74  Aligned_cols=84  Identities=14%  Similarity=0.141  Sum_probs=52.1

Q ss_pred             ceeeccCC--CchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCCceeEEEeccchhh
Q psy8709         204 HVIDVGAG--TGILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVESVDIIISEWMGYF  280 (319)
Q Consensus       204 ~VLDiGcG--tG~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~~fD~Iis~~~~~~  280 (319)
                      +|.=||+|  .+.++..+.+.|. +|++.|.++ .++.+.    +.+.-+   ....+.+.    ....|+|+...+   
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~----~~~~~~---~~~~~~~~----~~~~DiIilavp---   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAV----ERQLVD---EAGQDLSL----LQTAKIIFLCTP---   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH----HTTSCS---EEESCGGG----GTTCSEEEECSC---
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHH----Hhhccc---eeeeeccc----ccccccccccCc---
Confidence            45667777  3345566666776 999999998 555443    344312   11222222    246788886433   


Q ss_pred             hcchhhHHHHHHHHhcccCCCcEEE
Q psy8709         281 LLFETMIDSVIDARNRFLKPDGVVC  305 (319)
Q Consensus       281 l~~~~~~~~~l~~~~r~LkpgG~li  305 (319)
                         ......+++++...|+++-+++
T Consensus        67 ---~~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          67 ---IQLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             ---HHHHHHHHHHHGGGSCTTCEEE
T ss_pred             ---Hhhhhhhhhhhhhhccccccee
Confidence               2556788899998888887554

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=89.72  E-value=0.41  Score=37.70  Aligned_cols=104  Identities=10%  Similarity=0.048  Sum_probs=57.6

Q ss_pred             HHhcccccCCCcceeeccCC---CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc---
Q psy8709         192 AILNNKSLFNNKHVIDVGAG---TGILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE---  263 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcG---tG~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~---  263 (319)
                      .+.......++.+||=+.+|   .|..+..+++ .|+ +|+++--++ ..+...+.+++.|-...+..-..+..++.   
T Consensus        19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v   97 (189)
T d1gu7a2          19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTI   97 (189)
T ss_dssp             HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHH
Confidence            44455677788888877444   3556667777 466 777764333 44455556666665221111111222110   


Q ss_pred             -----cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         264 -----LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       264 -----~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                           .....+|+|+-..-.          ..+....+.|+|+|+++.
T Consensus        98 ~~~~~~~g~~vdvv~D~vg~----------~~~~~~~~~l~~~G~~v~  135 (189)
T d1gu7a2          98 KEWIKQSGGEAKLALNCVGG----------KSSTGIARKLNNNGLMLT  135 (189)
T ss_dssp             HHHHHHHTCCEEEEEESSCH----------HHHHHHHHTSCTTCEEEE
T ss_pred             HHHHhhccCCceEEEECCCc----------chhhhhhhhhcCCcEEEE
Confidence                 113569999843211          123455679999999884

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.24  E-value=0.18  Score=40.43  Aligned_cols=41  Identities=17%  Similarity=0.243  Sum_probs=33.1

Q ss_pred             CCCCCCeEEEecCCCChhhHHHH-hcCCceEEeeecCCCccc
Q psy8709         145 SLFNNKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSGTPIR  185 (319)
Q Consensus       145 ~~~~~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~~~~~  185 (319)
                      ...++..++|++||+|..+.... .....+++|+|.++....
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~   61 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLR   61 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHH
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHH
Confidence            45789999999999999987766 456778999999865443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=89.23  E-value=2.4  Score=36.38  Aligned_cols=48  Identities=19%  Similarity=0.218  Sum_probs=38.1

Q ss_pred             CCCCCCCeEEEecCCCChhhHHHHhcCCceEEeeecCCCcccHHHHHHH
Q psy8709         144 NSLFNNKHVIDVGAGTGILSIFAAQAGAAKVFAIEKSGTPIRTESYKSA  192 (319)
Q Consensus       144 ~~~~~~~~vLD~G~GsG~l~i~aa~~ga~~V~avd~d~~~~~~~~~~~~  192 (319)
                      ....++.+|||+-||+|.+++.+++ .+++|+|+|.+.........+..
T Consensus       208 ~~~~~~~~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~na~  255 (358)
T d1uwva2         208 LDVQPEDRVLDLFCGMGNFTLPLAT-QAASVVGVEGVPALVEKGQQNAR  255 (358)
T ss_dssp             HTCCTTCEEEEESCTTTTTHHHHHT-TSSEEEEEESCHHHHHHHHHHHH
T ss_pred             hccCCCceEEEecccccccchhccc-cccEEEeccCcHHHHHHHHHhHH
Confidence            3466788999999999999999886 45799999998877666444433

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.19  E-value=0.66  Score=35.82  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=56.6

Q ss_pred             HHhcccccCCCcceeeccCCCc-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEE-cCcccc-----
Q psy8709         192 AILNNKSLFNNKHVIDVGAGTG-ILSIFAAQ-AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYH-KLLEDV-----  262 (319)
Q Consensus       192 ~i~~~l~~~~~~~VLDiGcGtG-~ls~~la~-~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~-~d~~~~-----  262 (319)
                      .+.+.....++.+||=+|+|.+ .+...+++ .+..+|+++|.++ -.+.++    +.|..   .++. .+..+.     
T Consensus        19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~----~~Ga~---~~i~~~~~~~~~~~~~   91 (176)
T d2jhfa2          19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK----EVGAT---ECVNPQDYKKPIQEVL   91 (176)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS---EEECGGGCSSCHHHHH
T ss_pred             HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH----HhCCe---eEEecCCchhHHHHHH
Confidence            3455567888999999999744 33344444 5778999999999 555443    44432   1222 122111     


Q ss_pred             -ccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCC-cEEEe
Q psy8709         263 -ELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPD-GVVCP  306 (319)
Q Consensus       263 -~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~li~  306 (319)
                       ....+.+|+|+-....         ...+......++++ |.+++
T Consensus        92 ~~~~~~G~D~vid~~G~---------~~~~~~a~~~~~~~~g~~~~  128 (176)
T d2jhfa2          92 TEMSNGGVDFSFEVIGR---------LDTMVTALSCCQEAYGVSVI  128 (176)
T ss_dssp             HHHTTSCBSEEEECSCC---------HHHHHHHHHHBCTTTCEEEE
T ss_pred             HHHhcCCCCEEEecCCc---------hhHHHHHHHHHhcCCcceEE
Confidence             1223579999854321         12334445566665 55553

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=88.56  E-value=0.5  Score=42.11  Aligned_cols=52  Identities=15%  Similarity=0.169  Sum_probs=41.7

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHhcCC
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA---GAAKVFAIEKSD-IAYETIDIIRKNKY  248 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s~-~i~~a~~~~~~~g~  248 (319)
                      ....++..++|+|+-.|..+..++..   ...+|+++|+++ ..+..+++++.+..
T Consensus       208 ~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         208 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            34566789999999999988776652   246999999999 88888888887654

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.46  E-value=1.5  Score=37.79  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=77.0

Q ss_pred             cHHHHHHHHhcccccCCCcceeeccCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHhcC----------------
Q psy8709         185 RTESYKSAILNNKSLFNNKHVIDVGAGTGILSIFAAQ-AGAAKVFAIEKSDIAYETIDIIRKNK----------------  247 (319)
Q Consensus       185 ~~~~~~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s~~i~~a~~~~~~~g----------------  247 (319)
                      ++..+...+...+...+...|+-+|||.-.....+.. .+...++=+|..+.++.-.+.++++.                
T Consensus        80 Rt~~id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~  159 (328)
T d1rjda_          80 RTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKS  159 (328)
T ss_dssp             HHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCT
T ss_pred             HHHHHHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccc
Confidence            3444444444444445556899999999888777765 44447888888884443333333210                


Q ss_pred             ----CCCcEEEEEcCccccc---------cCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         248 ----YDSQIEVYHKLLEDVE---------LPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       248 ----~~~~i~~i~~d~~~~~---------~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                          ..++.+++..|+.+..         +.....-+++++.+..++.. +....+++.+.+....++.++.+
T Consensus       160 ~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~-~~~~~li~~~~~~f~~~~~i~YE  231 (328)
T d1rjda_         160 PFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHN-NESQLLINTIMSKFSHGLWISYD  231 (328)
T ss_dssp             TEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH-HHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             cccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCH-HHHHHHHHHHHHhCCCceEEEec
Confidence                1256788888887652         12234558888888777644 66788888888877665555443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.02  E-value=1.4  Score=36.04  Aligned_cols=75  Identities=16%  Similarity=0.150  Sum_probs=56.5

Q ss_pred             CCCcceeeccCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----------cC
Q psy8709         200 FNNKHVIDVGAGTG---ILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----------LP  265 (319)
Q Consensus       200 ~~~~~VLDiGcGtG---~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----------~~  265 (319)
                      ..|+++|--|++.|   .++..+++.|. +|+.+|.++ -++...+.+...+  .++..+.+|+.+..          -.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            35678888898887   45667777887 899999999 7777777777655  47899999997752          12


Q ss_pred             CCceeEEEeccc
Q psy8709         266 VESVDIIISEWM  277 (319)
Q Consensus       266 ~~~fD~Iis~~~  277 (319)
                      .+..|+++.+..
T Consensus        82 ~g~idilinnag   93 (244)
T d1yb1a_          82 IGDVSILVNNAG   93 (244)
T ss_dssp             TCCCSEEEECCC
T ss_pred             cCCCceeEeecc
Confidence            367899987653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.83  E-value=1.8  Score=35.77  Aligned_cols=74  Identities=26%  Similarity=0.297  Sum_probs=53.2

Q ss_pred             CCCcceeeccCCCch---HHHHHHHcCCCEEEEEecH-H-HHHHHHHHHHhcCCCCcEEEEEcCccccc----------c
Q psy8709         200 FNNKHVIDVGAGTGI---LSIFAAQAGAAKVFAIEKS-D-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----------L  264 (319)
Q Consensus       200 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----------~  264 (319)
                      .+|+++|-.|++.|.   ++..+++.|+ +|+.++.+ + .++.+.+.++..+.  ++.++..|+.+..          -
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence            456899999988773   5666777777 88888876 3 66777777777664  7889999987642          1


Q ss_pred             CCCceeEEEecc
Q psy8709         265 PVESVDIIISEW  276 (319)
Q Consensus       265 ~~~~fD~Iis~~  276 (319)
                      ..+..|+++.+.
T Consensus        93 ~~g~idilV~na  104 (272)
T d1g0oa_          93 IFGKLDIVCSNS  104 (272)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCCCcccccc
Confidence            125789998765

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.61  E-value=1.1  Score=37.31  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=66.1

Q ss_pred             Ccce-eeccCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----------cCC
Q psy8709         202 NKHV-IDVGAGTGI---LSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----------LPV  266 (319)
Q Consensus       202 ~~~V-LDiGcGtG~---ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----------~~~  266 (319)
                      |++| |--|++.|+   ++..+++.+..+|+.++.++ -++.+.+.++..+.  ++.++..|+.+..          -..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            4666 455665553   23445555445999999998 88888888877663  6889999997752          112


Q ss_pred             CceeEEEeccchhhh--cc---hhh-----------HHHHHHHHhcccCCCcEEEee
Q psy8709         267 ESVDIIISEWMGYFL--LF---ETM-----------IDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       267 ~~fD~Iis~~~~~~l--~~---~~~-----------~~~~l~~~~r~LkpgG~li~~  307 (319)
                      ++.|++|.|.-....  ..   ...           ...+.+.+...|+++|.++..
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            589999987532111  00   011           123466667888889987743

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.49  E-value=1.8  Score=35.52  Aligned_cols=74  Identities=22%  Similarity=0.230  Sum_probs=52.5

Q ss_pred             CCCcceeeccCCCc---hHHHHHHHcCCCEEEE-EecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----------c
Q psy8709         200 FNNKHVIDVGAGTG---ILSIFAAQAGAAKVFA-IEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----------L  264 (319)
Q Consensus       200 ~~~~~VLDiGcGtG---~ls~~la~~g~~~V~g-vD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----------~  264 (319)
                      ..|+++|-.|++.|   ..+..+++.|+ +|+. ...++ .++.+.+.++..|.  ++.++..|+.+..          .
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence            45788998887766   45566777787 5654 45566 77777788877764  7889999987642          1


Q ss_pred             CCCceeEEEecc
Q psy8709         265 PVESVDIIISEW  276 (319)
Q Consensus       265 ~~~~fD~Iis~~  276 (319)
                      ..+..|++|.+.
T Consensus        81 ~~g~idilinna   92 (259)
T d1ja9a_          81 HFGGLDFVMSNS   92 (259)
T ss_dssp             HHSCEEEEECCC
T ss_pred             HcCCCcEEEecc
Confidence            125799999875

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=85.15  E-value=1.4  Score=38.32  Aligned_cols=77  Identities=18%  Similarity=0.207  Sum_probs=45.0

Q ss_pred             cccCCCcceeeccCCCchHHHHHHHc--------CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccccCCC
Q psy8709         197 KSLFNNKHVIDVGAGTGILSIFAAQA--------GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVELPVE  267 (319)
Q Consensus       197 l~~~~~~~VLDiGcGtG~ls~~la~~--------g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~~~~~  267 (319)
                      +...+..+|+|+|+|+|.++.-+.+.        -..+++-+|.|+ +.+...+.++.  . .+++++ .+++.++   .
T Consensus        75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--~-~~i~w~-~~~~~~~---~  147 (365)
T d1zkda1          75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--I-RNIHWH-DSFEDVP---E  147 (365)
T ss_dssp             TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--C-SSEEEE-SSGGGSC---C
T ss_pred             hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--c-ccceec-cChhhcc---c
Confidence            34444568999999999998766552        123689999999 54444444332  2 345543 3343332   1


Q ss_pred             ceeEEEeccchhh
Q psy8709         268 SVDIIISEWMGYF  280 (319)
Q Consensus       268 ~fD~Iis~~~~~~  280 (319)
                      ..-+|++|-.+..
T Consensus       148 ~~g~iiaNE~fDA  160 (365)
T d1zkda1         148 GPAVILANEYFDV  160 (365)
T ss_dssp             SSEEEEEESSGGG
T ss_pred             CCeEEEecccCcc
Confidence            2256666654443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=82.84  E-value=1.7  Score=35.77  Aligned_cols=75  Identities=16%  Similarity=0.180  Sum_probs=55.2

Q ss_pred             CCcceeeccCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----------cCC
Q psy8709         201 NNKHVIDVGAGTGI---LSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----------LPV  266 (319)
Q Consensus       201 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----------~~~  266 (319)
                      +++++|--|++.|.   ++..+++.|+ +|+.+|.++ .++.+.+.+...+...++..+..|+.+..          -..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            46788888988773   4667777887 899999998 77777766665555468889999987642          012


Q ss_pred             CceeEEEecc
Q psy8709         267 ESVDIIISEW  276 (319)
Q Consensus       267 ~~fD~Iis~~  276 (319)
                      ++.|++|.|.
T Consensus        82 G~iDiLVnnA   91 (258)
T d1iy8a_          82 GRIDGFFNNA   91 (258)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            5799999764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.75  E-value=1.4  Score=34.54  Aligned_cols=74  Identities=15%  Similarity=0.113  Sum_probs=48.2

Q ss_pred             cCCCcceeeccCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccc---cccCCCceeE
Q psy8709         199 LFNNKHVIDVGAGTG---ILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLED---VELPVESVDI  271 (319)
Q Consensus       199 ~~~~~~VLDiGcGtG---~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~---~~~~~~~fD~  271 (319)
                      ..+++++|=.|++.|   .++..+++.|. +|+.++.++ .++.+.+.+..+.   ++.+...|+.+   +.-..+..|+
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~iDi   95 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAVKGAHF   95 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHTTTCSE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHhcCcCe
Confidence            456789999997766   34556667776 899999998 7666666655542   23344444433   2222357899


Q ss_pred             EEecc
Q psy8709         272 IISEW  276 (319)
Q Consensus       272 Iis~~  276 (319)
                      +|.+.
T Consensus        96 lin~A  100 (191)
T d1luaa1          96 VFTAG  100 (191)
T ss_dssp             EEECC
T ss_pred             eeecC
Confidence            99764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.63  E-value=2  Score=35.60  Aligned_cols=76  Identities=28%  Similarity=0.330  Sum_probs=56.6

Q ss_pred             CCCcceeeccCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCC-CcEEEEEcCccccc----------c
Q psy8709         200 FNNKHVIDVGAGTG---ILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYD-SQIEVYHKLLEDVE----------L  264 (319)
Q Consensus       200 ~~~~~VLDiGcGtG---~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~-~~i~~i~~d~~~~~----------~  264 (319)
                      .+++++|-.|++.|   .++..+++.|+ +|+.+|.++ .++.+.+.+...+.. .++.++.+|+.+..          .
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            45688898998877   44566777777 999999999 888888888776543 57899999987642          1


Q ss_pred             CCCceeEEEecc
Q psy8709         265 PVESVDIIISEW  276 (319)
Q Consensus       265 ~~~~fD~Iis~~  276 (319)
                      ..+..|++|.+.
T Consensus        82 ~~g~iDilvnnA   93 (272)
T d1xkqa_          82 QFGKIDVLVNNA   93 (272)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCceEEEeCC
Confidence            125789999763

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.43  E-value=2.2  Score=33.45  Aligned_cols=103  Identities=19%  Similarity=0.300  Sum_probs=66.4

Q ss_pred             cceeeccCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhc-------CCC--------------CcEEEEEcC
Q psy8709         203 KHVIDVGAGT--GILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKN-------KYD--------------SQIEVYHKL  258 (319)
Q Consensus       203 ~~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~-------g~~--------------~~i~~i~~d  258 (319)
                      ++|--+|+|+  ..++..++..|. .|+.+|.++ .++.+.+.+...       +..              .++.+.. |
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST-D   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-C
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-h
Confidence            5777788873  234456666777 999999999 888877665432       221              1122211 1


Q ss_pred             ccccccCCCceeEEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEeecCcceee
Q psy8709         259 LEDVELPVESVDIIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCPNRFTLSLC  314 (319)
Q Consensus       259 ~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~t~~~~  314 (319)
                      ..+   .....|+|+-..+    ...+...+++.++.++++|+-+|.-++.++.+.
T Consensus        83 ~~~---a~~~ad~ViEav~----E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~  131 (192)
T d1f0ya2          83 AAS---VVHSTDLVVEAIV----ENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT  131 (192)
T ss_dssp             HHH---HTTSCSEEEECCC----SCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH
T ss_pred             hHh---hhcccceehhhcc----cchhHHHHHHHHHhhhcccCceeeccCcccccc
Confidence            111   1245788886543    333567889999999999999888777766543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=81.94  E-value=0.52  Score=40.45  Aligned_cols=45  Identities=13%  Similarity=0.047  Sum_probs=32.9

Q ss_pred             CCCCCeEEEecCCCChhhHHHHh-c-----CCceEEeeecCCCcccHHHHH
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQ-A-----GAAKVFAIEKSGTPIRTESYK  190 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~-~-----ga~~V~avd~d~~~~~~~~~~  190 (319)
                      ..++.+|+|.+||+|.+.+.+.. +     ....++|+|+++.........
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~  165 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVG  165 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHH
Confidence            34678999999999999888752 2     244799999987655544443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=81.67  E-value=2.1  Score=35.25  Aligned_cols=73  Identities=16%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             CCcceeeccCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc-----------cC
Q psy8709         201 NNKHVIDVGAGTG---ILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE-----------LP  265 (319)
Q Consensus       201 ~~~~VLDiGcGtG---~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~-----------~~  265 (319)
                      +++++|-.|+..|   .++..+++.|. +|+.++.++ -++.+.+.++..+  .++.++..|+.+..           ..
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            5688999998877   34556677777 999999999 8888888887766  47888899987642           11


Q ss_pred             CCceeEEEecc
Q psy8709         266 VESVDIIISEW  276 (319)
Q Consensus       266 ~~~fD~Iis~~  276 (319)
                      .+..|+++.+.
T Consensus        82 ~g~idilinna   92 (258)
T d1ae1a_          82 DGKLNILVNNA   92 (258)
T ss_dssp             TSCCCEEEECC
T ss_pred             CCCcEEEeccc
Confidence            25688988754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=81.60  E-value=2.2  Score=35.10  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=54.7

Q ss_pred             CCcceeeccCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----------cCC
Q psy8709         201 NNKHVIDVGAGTGI---LSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----------LPV  266 (319)
Q Consensus       201 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----------~~~  266 (319)
                      +++++|--|++.|.   ++..+++.|+ +|+.+|.++ .++.+.+.++..+  .++..+..|+.+..          -..
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            56888888887773   4566777787 899999999 8888888777765  47889999987642          012


Q ss_pred             CceeEEEecc
Q psy8709         267 ESVDIIISEW  276 (319)
Q Consensus       267 ~~fD~Iis~~  276 (319)
                      +..|++|.+.
T Consensus        81 g~iDilVnna   90 (260)
T d1zema1          81 GKIDFLFNNA   90 (260)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCeehhhh
Confidence            5799999764

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=81.59  E-value=1.9  Score=35.19  Aligned_cols=42  Identities=26%  Similarity=0.327  Sum_probs=30.8

Q ss_pred             HHhcCCCCC-CCeEEEecCCCChhhHHHH-hcCCceEEeeecCC
Q psy8709         140 ILNNNSLFN-NKHVIDVGAGTGILSIFAA-QAGAAKVFAIEKSG  181 (319)
Q Consensus       140 i~~n~~~~~-~~~vLD~G~GsG~l~i~aa-~~ga~~V~avd~d~  181 (319)
                      +.......+ .++|+|+|||+|.+.+..+ .+..-+++..|...
T Consensus        72 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~  115 (243)
T d1kyza2          72 ILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH  115 (243)
T ss_dssp             HHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT
T ss_pred             HHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH
Confidence            334444444 5789999999999999988 44466788888754

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=81.07  E-value=0.82  Score=36.81  Aligned_cols=36  Identities=25%  Similarity=0.423  Sum_probs=30.1

Q ss_pred             CCCCCeEEEecCCCChhhHHHHhcC-CceEEeeecCC
Q psy8709         146 LFNNKHVIDVGAGTGILSIFAAQAG-AAKVFAIEKSG  181 (319)
Q Consensus       146 ~~~~~~vLD~G~GsG~l~i~aa~~g-a~~V~avd~d~  181 (319)
                      .+++++++|+|+|.|+=|+..|... ..+++.+|...
T Consensus        63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~   99 (207)
T d1jsxa_          63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLG   99 (207)
T ss_dssp             GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCH
T ss_pred             hhcCCceeeeeccCCceeeehhhhcccceEEEEecch
Confidence            3467899999999999999999665 67899998763

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=80.96  E-value=0.88  Score=34.90  Aligned_cols=48  Identities=17%  Similarity=0.225  Sum_probs=34.1

Q ss_pred             HhcccccCCCcceeeccCCCchH-HHHHHH-cCCCEEEEEecHH-HHHHHH
Q psy8709         193 ILNNKSLFNNKHVIDVGAGTGIL-SIFAAQ-AGAAKVFAIEKSD-IAYETI  240 (319)
Q Consensus       193 i~~~l~~~~~~~VLDiGcGtG~l-s~~la~-~g~~~V~gvD~s~-~i~~a~  240 (319)
                      +.+.....++.+|+=+|+|.+.+ +..+++ .+...|+++|.++ -++.++
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~   70 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK   70 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence            34555678889999999987544 333444 6778999999999 554443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.95  E-value=3.3  Score=29.93  Aligned_cols=62  Identities=18%  Similarity=0.200  Sum_probs=39.9

Q ss_pred             ceeeccCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----cCCCceeEEEe
Q psy8709         204 HVIDVGAGTGILSIFAAQ----AGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----LPVESVDIIIS  274 (319)
Q Consensus       204 ~VLDiGcGtG~ls~~la~----~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----~~~~~fD~Iis  274 (319)
                      +|+=+|+  |.++..+++    .|. .|+.+|.++ .++.+.+.   .    .+.++.||..+..    ...+..|.+++
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~---~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhh---h----hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            4555555  656555554    455 899999999 66554432   1    3568899987653    23467888886


Q ss_pred             c
Q psy8709         275 E  275 (319)
Q Consensus       275 ~  275 (319)
                      .
T Consensus        72 ~   72 (132)
T d1lssa_          72 V   72 (132)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.83  E-value=1.7  Score=35.69  Aligned_cols=75  Identities=16%  Similarity=0.128  Sum_probs=53.1

Q ss_pred             CCcceeeccCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCccccc----------cCC
Q psy8709         201 NNKHVIDVGAGTG---ILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDVE----------LPV  266 (319)
Q Consensus       201 ~~~~VLDiGcGtG---~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~~----------~~~  266 (319)
                      +|+++|=-|++.|   .++..+++.|+ +|+.+|.++ -++.+.+.+.......++.++..|+.+..          -..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            4678888888776   33455666776 899999998 77666666655433468899999997652          012


Q ss_pred             CceeEEEecc
Q psy8709         267 ESVDIIISEW  276 (319)
Q Consensus       267 ~~fD~Iis~~  276 (319)
                      ++.|++|.+.
T Consensus        81 G~iDilVnnA   90 (254)
T d2gdza1          81 GRLDILVNNA   90 (254)
T ss_dssp             SCCCEEEECC
T ss_pred             CCcCeecccc
Confidence            5799999775

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=80.16  E-value=2.1  Score=32.55  Aligned_cols=98  Identities=17%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             cceeeccCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc---cccccCCCceeEEEecc
Q psy8709         203 KHVIDVGAGTG--ILSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL---EDVELPVESVDIIISEW  276 (319)
Q Consensus       203 ~~VLDiGcGtG--~ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~---~~~~~~~~~fD~Iis~~  276 (319)
                      ++|-=+|+|.-  .++..+++.|. +|+.+|.++ .++...+.-................   .+..-.....|+|+...
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            56777888844  34556667776 999999998 5544432210000000011111110   00110114689998643


Q ss_pred             chhhhcchhhHHHHHHHHhcccCCCcEEEee
Q psy8709         277 MGYFLLFETMIDSVIDARNRFLKPDGVVCPN  307 (319)
Q Consensus       277 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  307 (319)
                      .-      .....++.++..+|+++-.++..
T Consensus        81 ~~------~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          81 PA------IHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             CG------GGHHHHHHHHGGGCCTTCEEEES
T ss_pred             ch------hHHHHHHHHhhhccCCCCEEEEe
Confidence            22      34577889999999998876643

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=80.06  E-value=0.73  Score=35.69  Aligned_cols=92  Identities=15%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             ccCCCcceeeccC--CCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCc-cc-c-ccCCCcee
Q psy8709         198 SLFNNKHVIDVGA--GTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLL-ED-V-ELPVESVD  270 (319)
Q Consensus       198 ~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~-~~-~-~~~~~~fD  270 (319)
                      ...++.+||--|+  |-|.++..+++. |+ +|+++.-++ -.+.+    +..|. +.+ +...+. .+ . ....+.+|
T Consensus        20 ~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~----~~lGa-d~v-i~~~~~~~~~~~~~~~~gvd   92 (167)
T d1tt7a2          20 LSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYL----KQLGA-SEV-ISREDVYDGTLKALSKQQWQ   92 (167)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHH----HHHTC-SEE-EEHHHHCSSCCCSSCCCCEE
T ss_pred             CCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHH----Hhhcc-cce-EeccchhchhhhcccCCCce
Confidence            3444567876664  356777788884 65 899999887 44444    34454 222 111111 11 1 12236799


Q ss_pred             EEEeccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         271 IIISEWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       271 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      +|+-..-+          ..+.+..+.|+|+|+++.
T Consensus        93 ~vid~vgg----------~~~~~~~~~l~~~G~iv~  118 (167)
T d1tt7a2          93 GAVDPVGG----------KQLASLLSKIQYGGSVAV  118 (167)
T ss_dssp             EEEESCCT----------HHHHHHHTTEEEEEEEEE
T ss_pred             EEEecCcH----------HHHHHHHHHhccCceEEE
Confidence            99854321          345667789999999884

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=80.05  E-value=1.1  Score=34.88  Aligned_cols=88  Identities=17%  Similarity=0.137  Sum_probs=51.6

Q ss_pred             CCcceeeccC--CCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHhcCCCCcEEEEEcCcccc--ccCCCceeEEEe
Q psy8709         201 NNKHVIDVGA--GTGILSIFAAQA-GAAKVFAIEKSD-IAYETIDIIRKNKYDSQIEVYHKLLEDV--ELPVESVDIIIS  274 (319)
Q Consensus       201 ~~~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s~-~i~~a~~~~~~~g~~~~i~~i~~d~~~~--~~~~~~fD~Iis  274 (319)
                      ++.+||-.|+  |.|..+..+++. |+ +|+++.-++ ..+.++    ..|-   -.++.-+-.+.  .+....+|.|+-
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~----~lGa---d~vi~~~~~~~~~~l~~~~~~~vvD  102 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLK----SLGA---SRVLPRDEFAESRPLEKQVWAGAID  102 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHH----HHTE---EEEEEGGGSSSCCSSCCCCEEEEEE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHH----hhcc---ccccccccHHHHHHHHhhcCCeeEE
Confidence            3346776553  355677778774 55 899988888 444443    3343   22333332222  233456888863


Q ss_pred             ccchhhhcchhhHHHHHHHHhcccCCCcEEEe
Q psy8709         275 EWMGYFLLFETMIDSVIDARNRFLKPDGVVCP  306 (319)
Q Consensus       275 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  306 (319)
                      . ++         ...+....+.|+++|+++.
T Consensus       103 ~-Vg---------g~~~~~~l~~l~~~Griv~  124 (177)
T d1o89a2         103 T-VG---------DKVLAKVLAQMNYGGCVAA  124 (177)
T ss_dssp             S-SC---------HHHHHHHHHTEEEEEEEEE
T ss_pred             E-cc---------hHHHHHHHHHhccccceEe
Confidence            2 21         1245667789999999984

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.01  E-value=2.6  Score=34.82  Aligned_cols=75  Identities=23%  Similarity=0.290  Sum_probs=55.8

Q ss_pred             CCcceeeccCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHhcCC-CCcEEEEEcCccccc----------cC
Q psy8709         201 NNKHVIDVGAGTGI---LSIFAAQAGAAKVFAIEKSD-IAYETIDIIRKNKY-DSQIEVYHKLLEDVE----------LP  265 (319)
Q Consensus       201 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s~-~i~~a~~~~~~~g~-~~~i~~i~~d~~~~~----------~~  265 (319)
                      +++++|--|++.|.   .+..+++.|+ +|+.+|.++ -++.+.+.+...+. ..++.++.+|+.+..          ..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            46888888988773   4556677777 899999998 78887777776654 357899999987652          01


Q ss_pred             CCceeEEEecc
Q psy8709         266 VESVDIIISEW  276 (319)
Q Consensus       266 ~~~fD~Iis~~  276 (319)
                      .++.|+++.+.
T Consensus        82 ~G~iDilVnnA   92 (274)
T d1xhla_          82 FGKIDILVNNA   92 (274)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCceEEEeec
Confidence            25789999864