Psyllid ID: psy871

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHcccccccccccccHHHHHHHcccccEEcEEEEEEEEccccHHHHHHHcccccccccccccccccEEEEEEEEccEEEEEEEcccccccHHHHHHHHHHccccccccEEEEEEEcccHHHHHHHHHHHHHcccccccccccEEEEEccccccccccHHHHHHHHcccccccccccccccccccccEEEEEccccccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHcccccEEEEEEcccccccEEEEEEEcEEEEEEcccccHHHHHHHHcccccEEEEEEHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHHcccHHHccccEEEEEEcccccccccHHHHHHHccHHccccccccccHHHcccccEEEEEEEEEcccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMlkddrlaqpvptlhpilgyLGLWTKSGKLLFLGLDNAGKTTLLHMlkddrlaqpvptlhptrrvwkdyfpaVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQClltdeslascpvlilgnkidkhgaasEEEIRQYFGLyglttgkvatprsemsgrpieLFMCSVLMRQGYGDGFRWLANYID
Flexible Loop (DISEMBL)
MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSElqclltdeslasSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLyglttgkvatprsemsgrPIELFMCSVLMRQGYGDGFRWLANYID
Low Complexity Region (SEG)
MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID
Disordered region (IsUnstruct)
*FQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTS***********LQCLLTDESLASSIVFLVDT************LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATP****SGRPIELFMCSVLMRQGYGDGFRWLANYI*
Disordered Region (DISOPRED)
MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID
Disordered Region (DISEMBL)
MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR*********LQCLLTDESLASSIVFLVDTSD**********LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID
Disordered Region (DISPRO)
MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
Q23445	193	GTP-binding protein SAR1	yes	N/A	0.763	0.984	0.477	3e-55
Q9CQC9	198	GTP-binding protein SAR1b	yes	N/A	0.767	0.964	0.476	2e-54
Q5PYH3	198	GTP-binding protein SAR1b	yes	N/A	0.767	0.964	0.472	5e-54
Q5HZY2	198	GTP-binding protein SAR1b	yes	N/A	0.767	0.964	0.476	5e-54
Q9Y6B6	198	GTP-binding protein SAR1b	yes	N/A	0.767	0.964	0.472	6e-54
Q9QVY3	198	GTP-binding protein SAR1b	yes	N/A	0.767	0.964	0.472	6e-54
Q3T0T7	198	GTP-binding protein SAR1b	yes	N/A	0.767	0.964	0.472	9e-54
Q5R548	198	GTP-binding protein SAR1a	no	N/A	0.767	0.964	0.467	2e-53
Q9NR31	198	GTP-binding protein SAR1a	no	N/A	0.767	0.964	0.467	2e-53
Q52NJ3	198	GTP-binding protein SAR1a	no	N/A	0.767	0.964	0.467	2e-53

>sp|Q23445|SAR1_CAEEL GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=3 SV=1

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 117/245 (47%), Positives = 141/245 (57%), Gaps = 55/245 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           +WDWF GVL  LGL  K GKL+FLGLDNAGKTTLLHMLKDDR+AQ VPTLHP    + L 
Sbjct: 4   LWDWFNGVLNMLGLANKKGKLVFLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEQMSL- 62

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
              G + F   D  G                       RRVWKDYFPAVDA+VFL+D +D
Sbjct: 63  ---GGISFTTYDLGGHAQ-------------------ARRVWKDYFPAVDAVVFLIDVAD 100

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
            ER +ES+ EL+ LL D                                E +AS PVLIL
Sbjct: 101 AERMQESRVELESLLQD--------------------------------EQIASVPVLIL 128

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKIDK GA SE++++    +  + TGK    R+EM+ RP+E+FMCSVL RQGYG+G RW
Sbjct: 129 GNKIDKPGALSEDQLKWQLNIQHMCTGKGDVSRNEMASRPMEVFMCSVLQRQGYGEGIRW 188

Query: 244 LANYI 248
           L  Y+
Sbjct: 189 LGQYL 193

Involved in transport from the endoplasmic reticulum to the Golgi apparatus.
Caenorhabditis elegans (taxid: 6239)

>sp|Q9CQC9|SAR1B_MOUSE GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1

 Score =  212 bits (539), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/250 (47%), Positives = 145/250 (58%), Gaps = 59/250 (23%)

Query: 4   IWDW----FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGY 59
           I+DW    F+ VL +LGL+ KSGKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP    
Sbjct: 4   IFDWIYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63

Query: 60  LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV 119
           L +      + F   D  G                       RRVWK+Y PA++ IVFLV
Sbjct: 64  LTI----AGMTFTTFDLGGHVQ-------------------ARRVWKNYLPAINGIVFLV 100

Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
           D +D ER  ESK EL  L+TD                                E++A+ P
Sbjct: 101 DCADHERLLESKEELDSLMTD--------------------------------ETIANVP 128

Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
           +LILGNKID+  A SEE +R+ FGLYG TTGK +    E++ RP+E+FMCSVL RQGYG+
Sbjct: 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188

Query: 240 GFRWLANYID 249
           GFRW+A YID
Sbjct: 189 GFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.

Mus musculus (taxid: 10090)

>sp|Q5PYH3|SAR1B_PIG GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1

 Score =  211 bits (536), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 118/250 (47%), Positives = 145/250 (58%), Gaps = 59/250 (23%)

Query: 4   IWDW----FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGY 59
           I+DW    F+ VL +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP    
Sbjct: 4   IFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63

Query: 60  LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV 119
           L +      + F   D  G                       RRVWK+Y PA++ IVFLV
Sbjct: 64  LTI----AGMTFTTFDLGGHVQ-------------------ARRVWKNYLPAINGIVFLV 100

Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
           D +D ER  ESK EL  L+TD                                E++A+ P
Sbjct: 101 DCADHERLLESKEELDSLMTD--------------------------------ETVANVP 128

Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
           +LILGNKID+  A SEE +R+ FGLYG TTGK +    E++ RP+E+FMCSVL RQGYG+
Sbjct: 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188

Query: 240 GFRWLANYID 249
           GFRW+A YID
Sbjct: 189 GFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.

Sus scrofa (taxid: 9823)

>sp|Q5HZY2|SAR1B_RAT GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1

 Score =  211 bits (536), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 119/250 (47%), Positives = 147/250 (58%), Gaps = 59/250 (23%)

Query: 4   IWDW----FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGY 59
           I+DW    F+ VL +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP    
Sbjct: 4   IFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63

Query: 60  LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV 119
           L +      + F   D  G     H+                RRVWK+Y PA++ IVFLV
Sbjct: 64  LTI----AGMTFTTFDLGG-----HL--------------QARRVWKNYLPAINGIVFLV 100

Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
           D +D ER  ESK EL  L+TD                                E++A+ P
Sbjct: 101 DCADHERLLESKEELDSLMTD--------------------------------ETIANVP 128

Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
           +LILGNKID+  A SEE +R+ FGLYG TTGK +    E++ RP+E+FMCSVL RQGYG+
Sbjct: 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188

Query: 240 GFRWLANYID 249
           GFRW+A YID
Sbjct: 189 GFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y6B6|SAR1B_HUMAN GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1

 Score =  211 bits (536), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 118/250 (47%), Positives = 145/250 (58%), Gaps = 59/250 (23%)

Query: 4   IWDW----FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGY 59
           I+DW    F+ VL +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP    
Sbjct: 4   IFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63

Query: 60  LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV 119
           L +      + F   D  G                       RRVWK+Y PA++ IVFLV
Sbjct: 64  LTI----AGMTFTTFDLGGHVQ-------------------ARRVWKNYLPAINGIVFLV 100

Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
           D +D ER  ESK EL  L+TD                                E++A+ P
Sbjct: 101 DCADHERLLESKEELDSLMTD--------------------------------ETIANVP 128

Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
           +LILGNKID+  A SEE +R+ FGLYG TTGK +    E++ RP+E+FMCSVL RQGYG+
Sbjct: 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGE 188

Query: 240 GFRWLANYID 249
           GFRW+A YID
Sbjct: 189 GFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.

Homo sapiens (taxid: 9606)

>sp|Q9QVY3|SAR1B_CRIGR GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1

 Score =  211 bits (536), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 118/250 (47%), Positives = 145/250 (58%), Gaps = 59/250 (23%)

Query: 4   IWDW----FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGY 59
           I+DW    F+ VL +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP    
Sbjct: 4   IFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63

Query: 60  LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV 119
           L +      + F   D  G                       RRVWK+Y PA++ IVFLV
Sbjct: 64  LTI----AGMTFTTFDLGGHIQ-------------------ARRVWKNYLPAINGIVFLV 100

Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
           D +D ER  ESK EL  L+TD                                E++A+ P
Sbjct: 101 DCADHERLLESKEELDSLMTD--------------------------------ETIANVP 128

Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
           +LILGNKID+  A SEE +R+ FGLYG TTGK +    E++ RP+E+FMCSVL RQGYG+
Sbjct: 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188

Query: 240 GFRWLANYID 249
           GFRW+A YID
Sbjct: 189 GFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.

Cricetulus griseus (taxid: 10029)

>sp|Q3T0T7|SAR1B_BOVIN GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1

 Score =  210 bits (534), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 118/250 (47%), Positives = 144/250 (57%), Gaps = 59/250 (23%)

Query: 4   IWDW----FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGY 59
           I+DW    F+ VL +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP    
Sbjct: 4   IFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63

Query: 60  LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV 119
           L +      + F   D  G                       RRVWK+Y PA++ IVFLV
Sbjct: 64  LTI----AGMTFTTFDLGGHVQ-------------------ARRVWKNYLPAINGIVFLV 100

Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
           D +D ER  ESK EL  L+TD                                E++A+ P
Sbjct: 101 DCADHERLLESKEELDSLMTD--------------------------------ETVANVP 128

Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
           +LILGNKID+  A SEE +R+ FGLYG TTGK      E++ RP+E+FMCSVL RQGYG+
Sbjct: 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSVLKRQGYGE 188

Query: 240 GFRWLANYID 249
           GFRW+A YID
Sbjct: 189 GFRWMAQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex.

Bos taurus (taxid: 9913)

>sp|Q5R548|SAR1A_PONAB GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/246 (46%), Positives = 143/246 (58%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           I++ F+ VL +LGL+ KSGKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP    L + 
Sbjct: 8   IYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI- 66

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
                + F   D  G                       RRVWK+Y PA++ IVFLVD +D
Sbjct: 67  ---AGMTFTTFDLGGH-------------------EQARRVWKNYLPAINGIVFLVDCAD 104

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
             R  ESK EL  L+T                                DE++++ P+LIL
Sbjct: 105 HSRLVESKVELNALMT--------------------------------DETISNVPILIL 132

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKID+  A SEE++R+ FGLYG TTGK      E++ RP+E+FMCSVL RQGYG+GFRW
Sbjct: 133 GNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRW 192

Query: 244 LANYID 249
           L+ YID
Sbjct: 193 LSQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES).

Pongo abelii (taxid: 9601)

>sp|Q9NR31|SAR1A_HUMAN GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/246 (46%), Positives = 143/246 (58%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           I++ F+ VL +LGL+ KSGKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP    L + 
Sbjct: 8   IYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI- 66

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
                + F   D  G                       RRVWK+Y PA++ IVFLVD +D
Sbjct: 67  ---AGMTFTTFDLGGH-------------------EQARRVWKNYLPAINGIVFLVDCAD 104

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
             R  ESK EL  L+T                                DE++++ P+LIL
Sbjct: 105 HSRLVESKVELNALMT--------------------------------DETISNVPILIL 132

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKID+  A SEE++R+ FGLYG TTGK      E++ RP+E+FMCSVL RQGYG+GFRW
Sbjct: 133 GNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRW 192

Query: 244 LANYID 249
           L+ YID
Sbjct: 193 LSQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus (By similarity). Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES).

Homo sapiens (taxid: 9606)

>sp|Q52NJ3|SAR1A_PIG GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/246 (46%), Positives = 143/246 (58%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           I++ F+ VL +LGL+ KSGKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP    L + 
Sbjct: 8   IYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI- 66

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
                + F   D  G                       RRVWK+Y PA++ IVFLVD +D
Sbjct: 67  ---AGMTFTTFDLGGH-------------------EQARRVWKNYLPAINGIVFLVDCAD 104

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
             R  ESK EL  L+T                                DE++++ P+LIL
Sbjct: 105 HPRLMESKVELNALMT--------------------------------DETISNVPILIL 132

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKID+  A SEE++R+ FGLYG TTGK      E++ RP+E+FMCSVL RQGYG+GFRW
Sbjct: 133 GNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRW 192

Query: 244 LANYID 249
           L+ YID
Sbjct: 193 LSQYID 198

Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES).

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
46561766	193	sar1 [Homalodisca vitripennis]	0.767	0.989	0.589	9e-70
31208009	193	AGAP004098-PA [Anopheles gambiae str. PE	0.767	0.989	0.593	4e-69
242024491	193	GTP-binding protein SAR1B, putative [Ped	0.767	0.989	0.585	2e-68
91091500	193	PREDICTED: similar to AGAP004098-PA [Tri	0.767	0.989	0.581	3e-68
156547852	193	PREDICTED: GTP-binding protein SAR1b-lik	0.767	0.989	0.577	9e-68
383857327	193	PREDICTED: GTP-binding protein SAR1b-lik	0.763	0.984	0.582	1e-67
217425997	193	Sar1 [Drosophila silvestris]	0.767	0.989	0.585	1e-67
195112642	193	GI10474 [Drosophila mojavensis] gi|19539	0.767	0.989	0.585	1e-67
157124857	193	GTP-binding protein sar1 [Aedes aegypti]	0.767	0.989	0.581	2e-67
170052591	193	GTP-binding protein SAR2 [Culex quinquef	0.767	0.989	0.581	2e-67

>gi|46561766|gb|AAT01088.1| sar1 [Homalodisca vitripennis]

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 145/246 (58%), Positives = 159/246 (64%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           +WDWFTGVLGYLGL+ KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP    L + 
Sbjct: 3   LWDWFTGVLGYLGLYKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTSEELSI- 61

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
              G + F   D  G T                     RRVWKDYFPAVDAIVFLVD SD
Sbjct: 62  ---GNMRFTTFDLGGHTQ-------------------ARRVWKDYFPAVDAIVFLVDASD 99

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
           R+R  ES+SEL  LL DE                                SL++CPVLIL
Sbjct: 100 RDRLPESQSELFSLLADE--------------------------------SLSNCPVLIL 127

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKID+HGAASE+E+R +F LYG TTGK   PRSE+  RP+ELFMCSVL RQGYGDGFRW
Sbjct: 128 GNKIDRHGAASEDELRGFFNLYGQTTGKTKVPRSELQARPLELFMCSVLKRQGYGDGFRW 187

Query: 244 LANYID 249
           LA YID
Sbjct: 188 LAEYID 193

Source: Homalodisca vitripennis

Species: Homalodisca vitripennis

Genus: Homalodisca

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|31208009|ref|XP_312971.1| AGAP004098-PA [Anopheles gambiae str. PEST] gi|347971235|ref|XP_003436713.1| AGAP004098-PB [Anopheles gambiae str. PEST] gi|30177041|gb|EAA08621.2| AGAP004098-PA [Anopheles gambiae str. PEST] gi|333468575|gb|EGK96987.1| AGAP004098-PB [Anopheles gambiae str. PEST]

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 146/246 (59%), Positives = 158/246 (64%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           IWDWFTGVLGYLGLW KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ VPTLHP    L + 
Sbjct: 3   IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSI- 61

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
              G + F   D  G T                     RRVWKDYFPAVDAIVFL+D  D
Sbjct: 62  ---GNMRFTTFDLGGHTQ-------------------ARRVWKDYFPAVDAIVFLIDAWD 99

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
           R RF ESK+EL  LLTD                                E+L++CPVLIL
Sbjct: 100 RTRFTESKNELDSLLTD--------------------------------EALSNCPVLIL 127

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKIDK GAASEEE+R YF L+ LTTGK   PRSE+ GRP+ELFMCSVL RQGYG+GFRW
Sbjct: 128 GNKIDKPGAASEEELRNYFALFQLTTGKGKVPRSELPGRPLELFMCSVLKRQGYGEGFRW 187

Query: 244 LANYID 249
           LA YID
Sbjct: 188 LAQYID 193

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024491|ref|XP_002432661.1| GTP-binding protein SAR1B, putative [Pediculus humanus corporis] gi|212518131|gb|EEB19923.1| GTP-binding protein SAR1B, putative [Pediculus humanus corporis]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/246 (58%), Positives = 155/246 (63%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           IWDWFTG LGYLGLW KSGKLLFLGLDNAGKTTLLHMLKDDR+AQ VPTLHP    L + 
Sbjct: 3   IWDWFTGALGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEELSI- 61

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
              G + F   D  G                    H  RRVWKDYFPAVDAIVFLVD  D
Sbjct: 62  ---GNMRFTTFDLGGH-------------------HQARRVWKDYFPAVDAIVFLVDACD 99

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
           R RF ESK+EL  LLTD                                E LA+CPVLIL
Sbjct: 100 RNRFVESKAELDSLLTD--------------------------------EQLANCPVLIL 127

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKID+ GAASE+E+R  F LYG TTGK   PRSE+ GRP+ELFMCSVL RQGYG+GFRW
Sbjct: 128 GNKIDRPGAASEDELRNVFALYGQTTGKGKVPRSEVPGRPLELFMCSVLKRQGYGEGFRW 187

Query: 244 LANYID 249
           LA YID
Sbjct: 188 LAQYID 193

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091500|ref|XP_968802.1| PREDICTED: similar to AGAP004098-PA [Tribolium castaneum] gi|270001011|gb|EEZ97458.1| hypothetical protein TcasGA2_TC011289 [Tribolium castaneum]

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 143/246 (58%), Positives = 158/246 (64%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           IWDWFTGVLGYLGLW KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ +PTLHP    L + 
Sbjct: 3   IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHLPTLHPTSEELSI- 61

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
              G + F   D  G +                     RRVWKDYFPAVDAIVFL+D +D
Sbjct: 62  ---GNMRFTTFDLGGHSQ-------------------ARRVWKDYFPAVDAIVFLIDAND 99

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
           R RFEESK EL  LLTD                                E+L+SCPVLIL
Sbjct: 100 RARFEESKQELVSLLTD--------------------------------ETLSSCPVLIL 127

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKID  GAASE+EIR Y+ LYG +TGK   PRSE+S RP+ELFMCS+L RQGYG+GFRW
Sbjct: 128 GNKIDLPGAASEDEIRMYYDLYGQSTGKGKVPRSELSARPLELFMCSILKRQGYGEGFRW 187

Query: 244 LANYID 249
           LA YID
Sbjct: 188 LAQYID 193

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547852|ref|XP_001605005.1| PREDICTED: GTP-binding protein SAR1b-like isoform 2 [Nasonia vitripennis] gi|156547854|ref|XP_001604983.1| PREDICTED: GTP-binding protein SAR1b-like isoform 1 [Nasonia vitripennis] gi|345485411|ref|XP_003425264.1| PREDICTED: GTP-binding protein SAR1b-like [Nasonia vitripennis]

 Score =  262 bits (670), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 142/246 (57%), Positives = 157/246 (63%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           IWDWFTGVLGYLGLW KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ VPTLHP    L + 
Sbjct: 3   IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSI- 61

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
              G + F   D  G T                     RRVWKDYFPAVDAIVFLVD SD
Sbjct: 62  ---GNMRFTTFDLGGHTQ-------------------ARRVWKDYFPAVDAIVFLVDASD 99

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
           R R  ES++EL  LLTD                                E L++CPVL+L
Sbjct: 100 RTRLPESRAELDALLTD--------------------------------EQLSACPVLVL 127

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKIDK GAASE+E+R +F L+G TTGK   PRS++ GRP+ELFMCSVL RQGYG+GFRW
Sbjct: 128 GNKIDKPGAASEDELRNFFNLFGQTTGKGKVPRSDIPGRPLELFMCSVLKRQGYGEGFRW 187

Query: 244 LANYID 249
           LA YID
Sbjct: 188 LAQYID 193

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857327|ref|XP_003704156.1| PREDICTED: GTP-binding protein SAR1b-like [Megachile rotundata]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 144/247 (58%), Positives = 155/247 (62%), Gaps = 57/247 (23%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           IWDWF GVL YLGLW KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ VPTLHP    L + 
Sbjct: 3   IWDWFAGVLNYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSI- 61

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP-TRRVWKDYFPAVDAIVFLVDTS 122
              G + F   D  G                    HP  RRVWKDYFPAVDAIVFLVD S
Sbjct: 62  ---GNMRFTTFDLGG--------------------HPQARRVWKDYFPAVDAIVFLVDAS 98

Query: 123 DRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI 182
           DR R  ESK+E   LLTD                                E L++CPVL+
Sbjct: 99  DRSRLPESKAEFDALLTD--------------------------------EQLSACPVLV 126

Query: 183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR 242
           LGNKIDK GAASE+E+R YF LYG TTGK    RSE+SGRP+ELFMCSVL RQGYG+GFR
Sbjct: 127 LGNKIDKPGAASEDELRNYFNLYGQTTGKGKISRSELSGRPLELFMCSVLKRQGYGEGFR 186

Query: 243 WLANYID 249
           WLA YID
Sbjct: 187 WLAQYID 193

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|217425997|gb|ACK44330.1| Sar1 [Drosophila silvestris]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 144/246 (58%), Positives = 158/246 (64%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           IWDWFTGVLGYLGLW KSGKLLFLGLDNAGKTTLLHMLKDD+LAQ VPTLHP    L + 
Sbjct: 3   IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDKLAQHVPTLHPTSEELSI- 61

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
              G + F   D  G T                     RRVWKDYFPAVDAIVFL+D  D
Sbjct: 62  ---GNMRFTTFDLGGHTQ-------------------ARRVWKDYFPAVDAIVFLIDAWD 99

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
           R RF+ESK+EL  LLTD                                E+L++CPVLIL
Sbjct: 100 RGRFQESKNELDSLLTD--------------------------------EALSNCPVLIL 127

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKIDK GAASE+E+R  FGLY LTTGK    RSE+ GRP+ELFMCSVL RQGYG+GFRW
Sbjct: 128 GNKIDKPGAASEDELRNMFGLYQLTTGKGKVARSELPGRPLELFMCSVLKRQGYGEGFRW 187

Query: 244 LANYID 249
           LA YID
Sbjct: 188 LAQYID 193

Source: Drosophila silvestris

Species: Drosophila silvestris

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112642|ref|XP_002000881.1| GI10474 [Drosophila mojavensis] gi|195390243|ref|XP_002053778.1| GJ23156 [Drosophila virilis] gi|193917475|gb|EDW16342.1| GI10474 [Drosophila mojavensis] gi|194151864|gb|EDW67298.1| GJ23156 [Drosophila virilis]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 144/246 (58%), Positives = 158/246 (64%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           IWDWFTGVLGYLGLW KSGKLLFLGLDNAGKTTLLHMLKDD+LAQ VPTLHP    L + 
Sbjct: 3   IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDKLAQHVPTLHPTSEELSI- 61

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
              G + F   D  G T                     RRVWKDYFPAVDAIVFL+D  D
Sbjct: 62  ---GNMRFTTFDLGGHTQ-------------------ARRVWKDYFPAVDAIVFLIDAWD 99

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
           R RF+ESK+EL  LLTD                                E+L++CPVLIL
Sbjct: 100 RGRFQESKNELDSLLTD--------------------------------EALSNCPVLIL 127

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKIDK GAASE+E+R  FGLY LTTGK    RSE+ GRP+ELFMCSVL RQGYG+GFRW
Sbjct: 128 GNKIDKPGAASEDELRNVFGLYQLTTGKGKVARSELPGRPLELFMCSVLKRQGYGEGFRW 187

Query: 244 LANYID 249
           LA YID
Sbjct: 188 LAQYID 193

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124857|ref|XP_001660557.1| GTP-binding protein sar1 [Aedes aegypti] gi|94468896|gb|ABF18297.1| vesicle coat complex COPII GTPase subunit SAR1 [Aedes aegypti] gi|108873845|gb|EAT38070.1| AAEL010012-PA [Aedes aegypti]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/246 (58%), Positives = 157/246 (63%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           IWDWFTGVLGYLGLW KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ VPTLHP    L + 
Sbjct: 3   IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSI- 61

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
              G + F   D  G T                     RRVWKDYFPAVDAIVFL+D  D
Sbjct: 62  ---GNMRFTTFDLGGHTQ-------------------ARRVWKDYFPAVDAIVFLIDAWD 99

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
           R RF ESK+EL  LLTD                                E+L++CPVLIL
Sbjct: 100 RSRFAESKNELDSLLTD--------------------------------EALSNCPVLIL 127

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKIDK GAASE+E+R +F LY LTTGK    R+E+ GRP+ELFMCSVL RQGYG+GFRW
Sbjct: 128 GNKIDKPGAASEDELRNHFALYQLTTGKGKVARNELPGRPLELFMCSVLKRQGYGEGFRW 187

Query: 244 LANYID 249
           LA YID
Sbjct: 188 LAQYID 193

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052591|ref|XP_001862291.1| GTP-binding protein SAR2 [Culex quinquefasciatus] gi|167873446|gb|EDS36829.1| GTP-binding protein SAR2 [Culex quinquefasciatus]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/246 (58%), Positives = 157/246 (63%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           IWDWFTGVLGYLGLW KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ VPTLHP    L + 
Sbjct: 3   IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSI- 61

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
              G + F   D  G T                     RRVWKDYFPAVDAIVFL+D  D
Sbjct: 62  ---GNMRFTTFDLGGHTQ-------------------ARRVWKDYFPAVDAIVFLIDAWD 99

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
           R RF ESK+EL  LLTD                                E+L++CPVLIL
Sbjct: 100 RSRFTESKNELDSLLTD--------------------------------EALSNCPVLIL 127

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKIDK GAASE+E+R +F LY LTTGK    R+E+ GRP+ELFMCSVL RQGYG+GFRW
Sbjct: 128 GNKIDKPGAASEDELRNHFALYQLTTGKGKVARNELPGRPLELFMCSVLKRQGYGEGFRW 187

Query: 244 LANYID 249
           LA YID
Sbjct: 188 LAQYID 193

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
MGI|MGI:1913647	198	Sar1b "SAR1 gene homolog B (S.	0.421	0.530	0.619	3.7e-52
UNIPROTKB|Q9QVY3	198	SAR1B "GTP-binding protein SAR	0.421	0.530	0.619	7.7e-52
RGD|1305590	198	Sar1b "SAR1 homolog B (S. cere	0.421	0.530	0.619	7.7e-52
UNIPROTKB|Q9Y6B6	198	SAR1B "GTP-binding protein SAR	0.421	0.530	0.619	9.9e-52
UNIPROTKB|Q5PYH3	198	SAR1B "GTP-binding protein SAR	0.421	0.530	0.619	9.9e-52
UNIPROTKB|E2RRQ3	198	SAR1B "Uncharacterized protein	0.421	0.530	0.619	1.6e-51
UNIPROTKB|Q3T0T7	198	SAR1B "GTP-binding protein SAR	0.421	0.530	0.619	2e-51
WB|WBGene00022678	193	sar-1 [Caenorhabditis elegans	0.413	0.533	0.553	8.7e-51
UNIPROTKB|F1NT40	198	SAR1B "Uncharacterized protein	0.738	0.929	0.546	1.4e-48
FB|FBgn0038947	197	Sar1 "Sar1 ortholog (S. cerevi	0.686	0.868	0.596	1.8e-48

MGI|MGI:1913647 Sar1b "SAR1 gene homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 349 (127.9 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
 Identities = 65/105 (61%), Positives = 82/105 (78%)

Query:   145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
             + IVFLVD +D ER  ESK EL  L+TDE++A+ P+LILGNKID+  A SEE +R+ FGL
Sbjct:    94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153

Query:   205 YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
             YG TTGK +    E++ RP+E+FMCSVL RQGYG+GFRW+A YID
Sbjct:   154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9QVY3 SAR1B "GTP-binding protein SAR1b" [Cricetulus griseus (taxid:10029)]

 Score = 349 (127.9 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 65/105 (61%), Positives = 82/105 (78%)

Query:   145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
             + IVFLVD +D ER  ESK EL  L+TDE++A+ P+LILGNKID+  A SEE +R+ FGL
Sbjct:    94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153

Query:   205 YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
             YG TTGK +    E++ RP+E+FMCSVL RQGYG+GFRW+A YID
Sbjct:   154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0005515 "protein binding" evidence=IPI

RGD|1305590 Sar1b "SAR1 homolog B (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 349 (127.9 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 65/105 (61%), Positives = 82/105 (78%)

Query:   145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
             + IVFLVD +D ER  ESK EL  L+TDE++A+ P+LILGNKID+  A SEE +R+ FGL
Sbjct:    94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153

Query:   205 YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
             YG TTGK +    E++ RP+E+FMCSVL RQGYG+GFRW+A YID
Sbjct:   154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0003674 "molecular_function" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9Y6B6 SAR1B "GTP-binding protein SAR1b" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
 Identities = 65/105 (61%), Positives = 82/105 (78%)

Query:   145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
             + IVFLVD +D ER  ESK EL  L+TDE++A+ P+LILGNKID+  A SEE +R+ FGL
Sbjct:    94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153

Query:   205 YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
             YG TTGK +    E++ RP+E+FMCSVL RQGYG+GFRW+A YID
Sbjct:   154 YGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0003924 "GTPase activity" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|Q5PYH3 SAR1B "GTP-binding protein SAR1b" [Sus scrofa (taxid:9823)]

 Score = 348 (127.6 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
 Identities = 65/105 (61%), Positives = 82/105 (78%)

Query:   145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
             + IVFLVD +D ER  ESK EL  L+TDE++A+ P+LILGNKID+  A SEE +R+ FGL
Sbjct:    94 NGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGL 153

Query:   205 YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
             YG TTGK +    E++ RP+E+FMCSVL RQGYG+GFRW+A YID
Sbjct:   154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RRQ3 SAR1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 346 (126.9 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
 Identities = 65/105 (61%), Positives = 81/105 (77%)

Query:   145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
             + IVFLVD +D ER  ESK EL  L+TDE++A+ P+LILGNKID+  A SEE +R+ FGL
Sbjct:    94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL 153

Query:   205 YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
             YG TTGK      E++ RP+E+FMCSVL RQGYG+GFRW+A YID
Sbjct:   154 YGQTTGKGNVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q3T0T7 SAR1B "GTP-binding protein SAR1b" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
 Identities = 65/105 (61%), Positives = 81/105 (77%)

Query:   145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
             + IVFLVD +D ER  ESK EL  L+TDE++A+ P+LILGNKID+  A SEE +R+ FGL
Sbjct:    94 NGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGL 153

Query:   205 YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
             YG TTGK      E++ RP+E+FMCSVL RQGYG+GFRW+A YID
Sbjct:   154 YGQTTGKGNVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

WB|WBGene00022678 sar-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 311 (114.5 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
 Identities = 57/103 (55%), Positives = 77/103 (74%)

Query:   146 SIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLY 205
             ++VFL+D +D ER +ES+ EL+ LL DE +AS PVLILGNKIDK GA SE++++    + 
Sbjct:    91 AVVFLIDVADAERMQESRVELESLLQDEQIASVPVLILGNKIDKPGALSEDQLKWQLNIQ 150

Query:   206 GLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
              + TGK    R+EM+ RP+E+FMCSVL RQGYG+G RWL  Y+
Sbjct:   151 HMCTGKGDVSRNEMASRPMEVFMCSVLQRQGYGEGIRWLGQYL 193

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|F1NT40 SAR1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 106/194 (54%), Positives = 135/194 (69%)

Query:    56 ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAI 115
             +L +LGL+ KSGKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHPT          +  +
Sbjct:    15 VLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL-----TIAGM 69

Query:   116 VFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175
              F   T D    E+++   +  L      + IVFLVD +D  R  ESK EL  L+TDE++
Sbjct:    70 TFT--TFDLGGHEQARRVWKNYLP---AINGIVFLVDCADHSRLMESKVELNALMTDETI 124

Query:   176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ 235
             ++ P+LILGNKID+  A SEE++R+ FGLYG TTGK   P  +++ RP+E+FMCSVL RQ
Sbjct:   125 SNVPILILGNKIDRPEAISEEKLREIFGLYGQTTGKGNVPLKDLNARPMEVFMCSVLKRQ 184

Query:   236 GYGDGFRWLANYID 249
             GYG+GFRWL+ YID
Sbjct:   185 GYGEGFRWLSQYID 198

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

FB|FBgn0038947 Sar1 "Sar1 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 114/191 (59%), Positives = 133/191 (69%)

Query:    60 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV 119
             LGLW KSGKLLFLGLDNAGKTTLLHMLKDD+LAQ VPTLHP+         ++  + F  
Sbjct:    26 LGLWKKSGKLLFLGLDNAGKTTLLHMLKDDKLAQHVPTLHPSSEEL-----SIGNMRFT- 79

Query:   120 DTSDRERFEESKSELQCLLTDESLA-SSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178
              T D     + K   + +  D   A  +IVFL+D  DR RF+ESK+EL  LLTDE+L++C
Sbjct:    80 -TFDLGGHTQGKCLARRVWKDYFPAVDAIVFLIDAWDRGRFQESKNELDSLLTDEALSNC 138

Query:   179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG 238
             PVLILGNKIDK GAASE+E+R  FGLY LTTG            P+ELFMCSVL RQGYG
Sbjct:   139 PVLILGNKIDKPGAASEDELRNVFGLYQLTTG------------PLELFMCSVLKRQGYG 186

Query:   239 DGFRWLANYID 249
             +GFRWLA YID
Sbjct:   187 EGFRWLAQYID 197

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0030134 "ER to Golgi transport vesicle" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008363 "larval chitin-based cuticle development" evidence=IMP

GO:0035293 "chitin-based larval cuticle pattern formation" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0050774 "negative regulation of dendrite morphogenesis" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0007029 "endoplasmic reticulum organization" evidence=IMP

GO:0048081 "positive regulation of cuticle pigmentation" evidence=IMP

GO:0009306 "protein secretion" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6BVA7	SAR1_DEBHA	3, ., 6, ., 5, ., -	0.4653	0.7550	0.9894	yes	N/A
Q5PYH3	SAR1B_PIG	No assigned EC number	0.472	0.7670	0.9646	yes	N/A
Q9CQC9	SAR1B_MOUSE	No assigned EC number	0.476	0.7670	0.9646	yes	N/A
Q9QVY3	SAR1B_CRIGR	No assigned EC number	0.472	0.7670	0.9646	yes	N/A
Q6CWR7	SAR1_KLULA	3, ., 6, ., 5, ., -	0.4233	0.7349	0.9631	yes	N/A
Q5BGB9	SAR1_EMENI	3, ., 6, ., 5, ., -	0.4448	0.7510	0.9894	yes	N/A
Q01475	SAR1_SCHPO	3, ., 6, ., 5, ., -	0.4367	0.7550	0.9894	yes	N/A
Q3T0T7	SAR1B_BOVIN	No assigned EC number	0.472	0.7670	0.9646	yes	N/A
Q5HZY2	SAR1B_RAT	No assigned EC number	0.476	0.7670	0.9646	yes	N/A
Q877B9	SAR1_ASPOR	3, ., 6, ., 5, ., -	0.4571	0.7510	0.9894	yes	N/A
Q755D7	SAR1_ASHGO	3, ., 6, ., 5, ., -	0.4233	0.7429	0.9736	yes	N/A
Q9Y6B6	SAR1B_HUMAN	No assigned EC number	0.472	0.7670	0.9646	yes	N/A
Q559R0	SAR1A_DICDI	No assigned EC number	0.4186	0.7429	0.9840	yes	N/A
Q9P4C8	SAR1_PICPG	3, ., 6, ., 5, ., -	0.4567	0.7469	0.9789	yes	N/A
P0CR30	SAR1_CRYNJ	3, ., 6, ., 5, ., -	0.4857	0.7510	0.9894	yes	N/A
Q4WJS7	SAR1_ASPFU	3, ., 6, ., 5, ., -	0.4530	0.7510	0.9894	yes	N/A
P0C951	SAR1_ASPNC	3, ., 6, ., 5, ., -	0.4526	0.7429	0.9788	yes	N/A
P0C950	SAR1_ASPNG	3, ., 6, ., 5, ., -	0.4444	0.7429	0.9788	yes	N/A
Q6CB54	SAR1_YARLI	3, ., 6, ., 5, ., -	0.4571	0.7550	0.9894	yes	N/A
Q6FUZ9	SAR1_CANGA	3, ., 6, ., 5, ., -	0.4274	0.7429	0.9788	yes	N/A
O04834	SAR1A_ARATH	No assigned EC number	0.4637	0.7710	0.9948	yes	N/A
A3LTA2	SAR1_PICST	3, ., 6, ., 5, ., -	0.4530	0.7550	0.9894	yes	N/A
P20606	SAR1_YEAST	3, ., 6, ., 5, ., -	0.4251	0.7510	0.9842	yes	N/A
Q23445	SAR1_CAEEL	No assigned EC number	0.4775	0.7630	0.9844	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	249
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-91
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	1e-69
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	6e-60
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-36
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	5e-21
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	6e-21
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	3e-20
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	5e-19
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-18
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-18
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	4e-18
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	6e-16
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	7e-16
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-15
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	1e-15
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	5e-14
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-13
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-12
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	6e-12
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-11
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-11
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-11
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	4e-11
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	6e-11
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	1e-09
cd00880	161	cd00880, Era_like, E	6e-07
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-05
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-04
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	1e-04
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-04
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	3e-04
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	5e-04
COG1159	298	COG1159, Era, GTPase [General function prediction	7e-04
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	0.002
COG2262	411	COG2262, HflX, GTPases [General function predictio	0.003
cd01878	204	cd01878, HflX, HflX GTPase family	0.004

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score =  267 bits (685), Expect = 1e-91
 Identities = 121/245 (49%), Positives = 140/245 (57%), Gaps = 55/245 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           I+DWF  VL  LGL+ K  K++FLGLDNAGKTTLLHMLKDDRLAQ VPTLHP    L + 
Sbjct: 2   IFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTI- 60

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
              G + F   D  G                       RRVWKDYFP VD          
Sbjct: 61  ---GNVKFTTFDLGGHEQA-------------------RRVWKDYFPEVDG--------- 89

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
                                  IVFLVD +D ERF+ESK EL  LL DE LA+ P+LIL
Sbjct: 90  -----------------------IVFLVDAADPERFQESKEELDSLLNDEELANVPILIL 126

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKIDK GA SEEE+R+  GLYG TTGK        + RP+E+FMCSV+ RQGYG+GFRW
Sbjct: 127 GNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGFRW 186

Query: 244 LANYI 248
           L+ Y+
Sbjct: 187 LSQYL 191

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score =  212 bits (540), Expect = 1e-69
 Identities = 110/243 (45%), Positives = 131/243 (53%), Gaps = 60/243 (24%)

Query: 6   DWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTK 65
           DWF  +L  LGLW K  K+LFLGLDNAGKTTLLHMLK+DRLAQ  PT HP    L +   
Sbjct: 2   DWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAI--- 58

Query: 66  SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRE 125
            G + F   D  G                       RR+WKDYFP V+            
Sbjct: 59  -GNIKFTTFDLGGHQQ-------------------ARRLWKDYFPEVNG----------- 87

Query: 126 RFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN 185
                                IV+LVD  D+ERF ESK EL  LL+DE LA+ P LILGN
Sbjct: 88  ---------------------IVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGN 126

Query: 186 KIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
           KID   AASE+E+R   GL   TTGK      ++  RP+E+FMCSV+ R GYG+GF+WL+
Sbjct: 127 KIDAPYAASEDELRYALGLTNTTTGK-----GKVGVRPVEVFMCSVVRRMGYGEGFKWLS 181

Query: 246 NYI 248
            YI
Sbjct: 182 QYI 184

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  186 bits (475), Expect = 6e-60
 Identities = 73/215 (33%), Positives = 99/215 (46%), Gaps = 66/215 (30%)

Query: 56  ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-------------- 101
           IL  L  W K  ++L LGLDNAGKTT+L+ LK   +   +PT+                 
Sbjct: 4   ILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVW 63

Query: 102 --------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDT 153
                   R +W++YFP  DA++F+VD++DR+R EE+K EL  LL +E            
Sbjct: 64  DVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEE------------ 111

Query: 154 SDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213
                      EL            P+LIL NK D  GA SE EIR+  GL+ L      
Sbjct: 112 -----------ELAD---------APLLILANKQDLPGAMSEAEIRELLGLHELKD---- 147

Query: 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
                   RP E+  CS +  +G  +G  WL+NYI
Sbjct: 148 --------RPWEIQGCSAVTGEGLDEGLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  126 bits (318), Expect = 2e-36
 Identities = 59/201 (29%), Positives = 84/201 (41%), Gaps = 66/201 (32%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH----------------------PTRRVW 105
           ++L LGLD AGKTT+L+ LK   +   +PT+                         R +W
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60

Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
           K Y+   D ++F+VD+SDRER EE+K+EL  LL +E                       E
Sbjct: 61  KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEE-----------------------E 97

Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
           L+           P+LIL NK D  GA +E E+ +  GL  +             GR   
Sbjct: 98  LKG---------APLLILANKQDLPGALTESELIELLGLESIK------------GRRWH 136

Query: 226 LFMCSVLMRQGYGDGFRWLAN 246
           +  CS +   G  +G  WL  
Sbjct: 137 IQPCSAVTGDGLDEGLDWLIE 157

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 86.2 bits (214), Expect = 5e-21
 Identities = 63/235 (26%), Positives = 92/235 (39%), Gaps = 89/235 (37%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGY-----------LGLWTKSGKLLF 71
           ++L LGLDNAGKTT+L         + + T+ P LG+           L +W        
Sbjct: 16  RILMLGLDNAGKTTILKKFNG----EDISTISPTLGFNIKTLEYNGYKLNIW-------- 63

Query: 72  LGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK 131
              D  G+ +L                   R  W++YF + DA++++VD+SDR R E+ K
Sbjct: 64  ---DVGGQKSL-------------------RSYWRNYFESTDALIWVVDSSDRARLEDCK 101

Query: 132 SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG 191
            ELQ LL +E LA +                                 +LI  NK D  G
Sbjct: 102 RELQKLLVEERLAGA--------------------------------TLLIFANKQDLPG 129

Query: 192 AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
           A S EEIR+   L  + +                +F CS +  +   DG  WL +
Sbjct: 130 ALSPEEIREVLELDSIKS------------HHWRIFGCSAVTGENLLDGIDWLVD 172

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 85.9 bits (213), Expect = 6e-21
 Identities = 56/201 (27%), Positives = 81/201 (40%), Gaps = 66/201 (32%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL-----------------------HPTRRV 104
           ++L LGLD+AGK+TLL+ LK   L   +PT+                          R V
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60

Query: 105 WKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS 164
           WK Y    D +V++VD+SD  R +ES+ EL+ +L +E +                     
Sbjct: 61  WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGV------------------ 102

Query: 165 ELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI 224
                         PV++L NK D  GA + EEI + F L               S R  
Sbjct: 103 --------------PVVLLANKQDLPGALTAEEITRRFKLKKYC-----------SDRDW 137

Query: 225 ELFMCSVLMRQGYGDGFRWLA 245
            +  CS +  +G  + FR LA
Sbjct: 138 YVQPCSAVTGEGLAEAFRKLA 158

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 84.0 bits (208), Expect = 3e-20
 Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 66/201 (32%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
           ++L LGLD AGKTT+L+ L+   +   +PT+                         R  W
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60

Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
           + Y+   DAI+++VD++DR+R   SKSEL  +L +E L  +                   
Sbjct: 61  RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDA------------------- 101

Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
                         +L+  NK D  GA SE E+ +  GL            SE+  R  +
Sbjct: 102 -------------VLLVFANKQDMPGALSEAEVAEKLGL------------SELKDRTWQ 136

Query: 226 LFMCSVLMRQGYGDGFRWLAN 246
           +F  S    +G  +G  WL N
Sbjct: 137 IFKTSATKGEGLDEGMDWLVN 157

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 80.9 bits (200), Expect = 5e-19
 Identities = 52/200 (26%), Positives = 79/200 (39%), Gaps = 66/200 (33%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPT----------------------LHPTRRVW 105
           ++L LGLDNAGKTT+L  L  + ++   PT                          R  W
Sbjct: 17  RILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGGQRKIRPYW 76

Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
           ++YF   D +++++D++DR+RFEE+  EL                         E     
Sbjct: 77  RNYFENTDVLIYVIDSADRKRFEEAGQEL------------------------VE----- 107

Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
              LL +E LA  PVL+  NK D   AA  EE+ +   L             ++  R   
Sbjct: 108 ---LLEEEKLAGVPVLVFANKQDLLTAAPAEEVAEALNL------------HDIRDRSWH 152

Query: 226 LFMCSVLMRQGYGDGFRWLA 245
           +  CS    +G  +G  W+ 
Sbjct: 153 IQACSAKTGEGLQEGMNWVC 172

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 13/144 (9%)

Query: 72  LGLDNAGKTTLLHMLKDDRLAQP-VPTL-HPTRRVWKDYFPAVDAIVFLVDTSDRERFEE 129
           +GL N+GKTTL++++   + ++  +PT+    R+V K     V   V+  D   + RF  
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTK---GNVTIKVW--DLGGQPRFR- 58

Query: 130 SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189
           S  E  C        ++IV++VD +DRE+ E +K+EL  LL   SL   P+L+LGNK D 
Sbjct: 59  SMWERYC-----RGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Query: 190 HGAASEEEIRQYFGLYGLTTGKVA 213
            GA S +E+ +   L  +T  +V+
Sbjct: 114 PGALSVDELIEQMNLKSITDREVS 137

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 22/180 (12%)

Query: 70  LFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD-RERFE 128
           L LGLDNAGKTT L   K  + ++    L+P++       P V   +  ++    R  F 
Sbjct: 3   LILGLDNAGKTTFLEQTKT-KFSKNYKGLNPSKIT-----PTVGLNIGTIEVGKARLMFW 56

Query: 129 E--SKSELQCLLTDE--SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
           +   + EL+ L  D+  + +  +++++D++DRERF ESKS  + ++ +E+L   P+L+L 
Sbjct: 57  DLGGQEELRSLW-DKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLA 115

Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
           NK D   A S  EI++ F       G+          R   +   S L  +G  +G  WL
Sbjct: 116 NKQDLPDALSVAEIKEVFDDCIALIGR----------RDCLVQPVSALEGEGVEEGIEWL 165

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 78.9 bits (195), Expect = 4e-18
 Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 51/203 (25%)

Query: 61  GLWT-----KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAI 115
            LW+     K  K++ +GLDNAGKTT+L+      +    PT+                 
Sbjct: 5   SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTI----------------- 47

Query: 116 VFLVDTSDRERFEESKSELQC--LLTDESLASS----------IVFLVDTSDRERFEESK 163
                 S+ E             +   ESL SS          ++ ++D++DRER   +K
Sbjct: 48  -----GSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTK 102

Query: 164 SELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRP 223
            EL  +L  E L    +L+L NK D  GA +  EI +  GL  +                
Sbjct: 103 EELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRD------------HT 150

Query: 224 IELFMCSVLMRQGYGDGFRWLAN 246
             +  C  L  +G  +G  W+A+
Sbjct: 151 WHIQGCCALTGEGLPEGLDWIAS 173

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 72.5 bits (178), Expect = 6e-16
 Identities = 54/225 (24%), Positives = 86/225 (38%), Gaps = 67/225 (29%)

Query: 24  LLFLGLDNAGKTTLLHMLK--DDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTT 81
           +L LGLDN+GKTT+++ LK  + +    VPT+    G+     K G L F   D +G+  
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTV----GFNVESFKKGNLSFTAFDMSGQGK 57

Query: 82  LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE 141
                               R +W+ Y+  +  I+F++D+SDR R   +K EL+ LL   
Sbjct: 58  Y-------------------RGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHP 98

Query: 142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQY 201
            +    +                              P+L   NK+D   A +  +I Q 
Sbjct: 99  DIKHRRI------------------------------PILFYANKMDLPDALTAVKITQL 128

Query: 202 FGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
             L              +  +P  +F  S L  +G  +G  WL  
Sbjct: 129 LCL------------ENIKDKPWHIFASSALTGEGLDEGVDWLQA 161

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 72.8 bits (178), Expect = 7e-16
 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 24/151 (15%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           +++ LGLD AGKTT+L  LK D   QP+PT                 I F V+T + +  
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPT-----------------IGFNVETVEYKNL 43

Query: 128 EES------KSELQCLLTDESLAS-SIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180
           + +      K +L+ L     L + ++VF++D+S R+R  E+ SEL  LLT++ L    +
Sbjct: 44  KFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALL 103

Query: 181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGK 211
           LI  NK D  GA S EE+ +   L+ L  G+
Sbjct: 104 LIFANKQDVAGALSVEEMTELLSLHKLCCGR 134

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 73.1 bits (179), Expect = 1e-15
 Identities = 39/177 (22%), Positives = 63/177 (35%), Gaps = 17/177 (9%)

Query: 62  LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ------PVPTLHPTRRVWKDYFPAVDAI 115
           L+ K  K++ LG    GKTTLL+ L  D   +             T   ++         
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQ--- 57

Query: 116 VFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175
             L DT+ +E +   + E          A+ I+ + D++ RE  +E   E    L + + 
Sbjct: 58  --LWDTAGQEEYRSLRPE------YYRGANGILIVYDSTLRESSDELTEEWLEELRELAP 109

Query: 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL 232
              P+L++GNKID     S  E         +    +A            L   S  
Sbjct: 110 DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAK 166

Length = 219

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 71.7 bits (176), Expect = 1e-15
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 54/163 (33%)

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPT 101
            K  ++L LGLD AGKTT+L+ LK  +    +PT+                         
Sbjct: 7   NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 66

Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE 161
           R +W+ Y+     ++F+VD++DR+R +E++ EL  ++               +DRE    
Sbjct: 67  RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRII---------------NDRE---- 107

Query: 162 SKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
                        +    +L+  NK D   A    EI++  GL
Sbjct: 108 -------------MRDALLLVFANKQDLPDAMKPHEIQEKLGL 137

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 67.5 bits (165), Expect = 5e-14
 Identities = 43/166 (25%), Positives = 61/166 (36%), Gaps = 57/166 (34%)

Query: 69  LLFLGLDNAGKTTLLHMLKDDR-LAQPVPTL----------------------HPTRRVW 105
           +L LGLD AGKT+LLH L  +R L   VPT                          R+ W
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61

Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
           K Y      ++F+VD++D ER   ++ EL  LL                           
Sbjct: 62  KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPP----------------------- 98

Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGK 211
                        P+++L NK D   A S +EI +   L  +  G+
Sbjct: 99  -----------DLPLVVLANKQDLPAARSVQEIHKELELEPIARGR 133

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 48/204 (23%), Positives = 79/204 (38%), Gaps = 70/204 (34%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
           ++L +GLD AGKTT+L+ LK   +   +PT+                         R +W
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61

Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
           + YF     ++F+VD++DRER  E++ ELQ +L ++ L  ++                  
Sbjct: 62  RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV------------------ 103

Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
                         +L+  NK D   A S  E+    GL+ L              R   
Sbjct: 104 --------------LLVFANKQDLPNAMSAAEVTDKLGLHSL--------------RNRN 135

Query: 226 LFMCSVLMRQGYG--DGFRWLANY 247
            ++ +     G G  +G  WL+N 
Sbjct: 136 WYIQATCATSGDGLYEGLDWLSNN 159

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 70/208 (33%)

Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTR 102
           K  ++L +GLD AGKTT+L+ LK   +   +PT+                         R
Sbjct: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 75

Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES 162
            +W+ YF     ++F+VD++DR+R  E++ EL  +L ++ L  ++               
Sbjct: 76  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV--------------- 120

Query: 163 KSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGR 222
                            +L+  NK D   A +  EI    GL+ L              R
Sbjct: 121 -----------------LLVFANKQDLPNAMNAAEITDKLGLHSL--------------R 149

Query: 223 PIELFMCSVLMRQGYG--DGFRWLANYI 248
               ++ S     G G  +G  WL+N I
Sbjct: 150 QRHWYIQSTCATSGEGLYEGLDWLSNNI 177

Length = 181

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 48/138 (34%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 72  LGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV-DTSDRERFEES 130
           LGLD+AGKTT+L+ LK +     VPT        K        + F   D   +E+    
Sbjct: 9   LGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPL 68

Query: 131 -KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK 189
            KS  +C  TD      IVF+VD+ D ER EE+K+EL  +         PVL+L NK D 
Sbjct: 69  WKSYTRC--TD-----GIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDL 121

Query: 190 HGAASEEEIRQYFGLYGL 207
             A    E+ +   L+ L
Sbjct: 122 PNALPVSEVEKLLALHEL 139

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 27/180 (15%)

Query: 17  LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ--PVPTLHPILGYLGLWTKSGKLLFLGL 74
           L+ K  K++ LG    GKTTLL+ L  D   +  P    +       +      +     
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKT-IEPYRRNIKLQLW 59

Query: 75  DNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSEL 134
           D AG          +            R +  +Y+   + I+ + D++ RE  +E   E 
Sbjct: 60  DTAG---------QEEY----------RSLRPEYYRGANGILIVYDSTLRESSDELTEEW 100

Query: 135 QCLLTDESLASSIVFLV-DTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA 193
              L + +     + LV +  D    + S  E+   L  E      +L+L  K      A
Sbjct: 101 LEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREV----VLLVLAPKAVLPEVA 156

Length = 219

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 60.7 bits (147), Expect = 2e-11
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 22/108 (20%)

Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTR 102
           K  ++L +GLD AGKTT+L+ LK       +PT+                         R
Sbjct: 12  KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIR 71

Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
            +W+ Y+     ++F+VD++DR+R +E++ EL  +L ++ L  +++ +
Sbjct: 72  PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILV 119

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 10/133 (7%)

Query: 70  LFLGLDNAGKTTLLHMLKDDRLAQ----PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRE 125
           + +G    GK++LL+ L    + +    P  T  P   V +     V   + LVDT   +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVK--LVLVDTPGLD 58

Query: 126 RFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN 185
            F     E    L     A  I+ +VD++DRE  E++K  +   L  E +   P++++GN
Sbjct: 59  EFGGLGREELARLLLRG-ADLILLVVDSTDRESEEDAKLLILRRLRKEGI---PIILVGN 114

Query: 186 KIDKHGAASEEEI 198
           KID       EE+
Sbjct: 115 KIDLLEEREVEEL 127

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 69  LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE 128
           LL +GLDNAGKTTL+  L+ +   +  PT+  T              V + D      F 
Sbjct: 2   LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP----TKLRLDKYEVCIFDLGGGANFR 57

Query: 129 ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID 188
                        + A  +VF+VD+SD +R +E K  L+ LL    ++  P+L+L NK D
Sbjct: 58  GIWVNYY------AEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQD 111

Query: 189 KHGAASEEEIRQYFGL 204
           K  A    ++ +Y  L
Sbjct: 112 KKNALLGADVIEYLSL 127

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 59.5 bits (144), Expect = 6e-11
 Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 22/108 (20%)

Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTR 102
           K  ++L +GLD AGKTT+L+ LK   +   +PT+                         R
Sbjct: 16  KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLR 75

Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
            +W+ Y+   + ++F+VD++DRER  +++ EL+ +L+++ L  +++ +
Sbjct: 76  PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLV 123

Length = 182

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 9/134 (6%)

Query: 70  LFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE 129
           L LG  ++GKT L   L   ++   V ++ P    +     +    + LVD    E+  +
Sbjct: 4   LLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSN-SSKGKKLTLVDVPGHEKLRD 62

Query: 130 SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE-LQCLLTDESLASC--PVLILGNK 186
                + L   ++   +IVF+VD++  ++     +E L  +LTD        P+LI  NK
Sbjct: 63  -----KLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNK 117

Query: 187 IDKHGAASEEEIRQ 200
            D   A   ++I++
Sbjct: 118 QDLFTAKPAKKIKE 131

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 32/165 (19%)

Query: 71  FLGLDNAGKTTLLH-MLKDDRLA-QPVP--TLHPTRRVWKDYFPAVDAIVFLVDT----- 121
             G  N GK++LL+ +L  +     P+P  T  P R+ W+   P     V L+DT     
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELL-PLGP--VVLIDTPGLDE 58

Query: 122 ---SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178
                RER EE++            A  ++ +VD SD    EE   E +  L        
Sbjct: 59  EGGLGRERVEEARQVAD-------RADLVLLVVD-SDLTPVEE---EAK--LGLLRERGK 105

Query: 179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKV----ATPRSEM 219
           PVL++ NKID    + EEE+ +   L  L    V    A P   +
Sbjct: 106 PVLLVLNKIDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGI 150

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 21/145 (14%)

Query: 67  GKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPTRRVWKDYFPAVDAIVF---LVDT 121
            K++ +G  N GK+TLL+ L  ++++  +  P    TR          D   +   L+DT
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGT--TRNYVTTVI-EEDGKTYKFNLLDT 58

Query: 122 SDRERFEESKSELQCLLTDESLAS----SIVFLVDTSDRERFEESKSELQCLLTDESLAS 177
           + +E +      ++ L      +S     IV LV        EE   +    +   + + 
Sbjct: 59  AGQEDY----DAIRRLYYRAVESSLRVFDIVILVL-----DVEEILEKQTKEIIHHAESG 109

Query: 178 CPVLILGNKIDKHGAASEEEIRQYF 202
            P++++GNKID   A  +  +   F
Sbjct: 110 VPIILVGNKIDLRDAKLKTHVAFLF 134

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 68  KLLFLGLDNAGKTTLLH-MLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV-DTSDRE 125
           K++ +G   +GK++LL  ++  +   +P+                 D  +  + D   RE
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEI-QGDTLAVDTLEVDGDTGLLNIWDFGGRE 59

Query: 126 RFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC-PVLILG 184
                K E    +     A +I+ + D +DRE   E    +  L     L    PV+++G
Sbjct: 60  EL---KFEHIIFMKW---ADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVG 113

Query: 185 NKI 187
           NK+
Sbjct: 114 NKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 22/126 (17%)

Query: 71  FLGLDNAGKTTLLHMLKDDRLAQ--PVP--TLHPTRRVWKDYFPAVDAIVFLVDT----S 122
            +G  N GK+TL++ L   ++A     P  T  P   V           + LVDT     
Sbjct: 4   LVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVLGL-----GRQIILVDTPGLIE 58

Query: 123 DRERFEESKSELQCLLTDESLASS--IVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180
                +  +   + L   E++  +  I+ +VD S+      ++ + + L   E L   P+
Sbjct: 59  GASEGKGVEGFNRFL---EAIREADLILLVVDASE----GLTEDDEEILEELEKLPKKPI 111

Query: 181 LILGNK 186
           +++ NK
Sbjct: 112 ILVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 15/123 (12%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT--RRVWKDYFPAVDAIVFLVDTSDRE 125
           K++ LG  N GKT+LLH   + R    V T+      + W  Y  ++       DT+ RE
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISI------WDTAGRE 55

Query: 126 RFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN 185
           +F      + C       A++++   D S+ +  EE +      LTD +   C   ++GN
Sbjct: 56  QF-HGLGSMYC-----RGAAAVILTYDVSNVQSLEELEDRF-LGLTDTANEDCLFAVVGN 108

Query: 186 KID 188
           K+D
Sbjct: 109 KLD 111

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 12/138 (8%)

Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
           K  +++ +G +  GK++L+  L  +   + VP + P   +  D  P       +VDTS R
Sbjct: 1   KDVRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPE-RVPTTIVDTSSR 59

Query: 125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
            +   +       L  E   ++++ LV + DR    E        L        P++++G
Sbjct: 60  PQDRAN-------LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVG 112

Query: 185 NKID----KHGAASEEEI 198
           NK D       A  EEE+
Sbjct: 113 NKSDLRDGSSQAGLEEEM 130

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 36/150 (24%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPTRRVWKDYFPAVDAI------VFLVD 120
           K++ +G    GKT+LL    D++       T+        D+      +      + + D
Sbjct: 2   KIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGV------DFKSKTIEVDGKKVKLQIWD 55

Query: 121 TSDRERFEESKSELQCLLTDESLASS------IVFLV-DTSDRERFEESKSELQCLLTDE 173
           T+ +ERF              S+ SS         LV D ++RE FE     L   L + 
Sbjct: 56  TAGQERFR-------------SITSSYYRGAHGAILVYDVTNRESFENLDKWLN-ELKEY 101

Query: 174 SLASCPVLILGNKIDKHG--AASEEEIRQY 201
           +  + P++++GNK D       S EE +Q+
Sbjct: 102 APPNIPIILVGNKSDLEDERQVSTEEAQQF 131

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 25/137 (18%)

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPTRRVW--KDYFPAVDAIVF 117
            KSG +  +G  N GK+TLL+ L   +++    +P  T +  R +    +       I+F
Sbjct: 4   FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNA-----QIIF 58

Query: 118 LVDTSDRERFEESKSELQCLLTDESLASS-----IVFLVDTSDRERFEESKSELQCLLTD 172
            VDT       + K  L  L+   + ++      I+F+VD +D       +  L+ L   
Sbjct: 59  -VDTPG---IHKPKHALGELMNKAARSALKDVDLILFVVD-ADEGWGPGDEFILEQL--- 110

Query: 173 ESLASCPVLILGNKIDK 189
                 PV+++ NKIDK
Sbjct: 111 -KKTKTPVILVVNKIDK 126

Length = 298

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 26/152 (17%)

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKD---DRLAQPVPTLHPTRRVWK----DYFPAV---D 113
               K++ +G   AGKTT +  L D           ++    +       D+       D
Sbjct: 8   MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED 67

Query: 114 AIVFLVDTSDRERFE---ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL 170
             V L  T  +ERF+   E  S           A   + LVD+S    F   +     + 
Sbjct: 68  TGVHLFGTPGQERFKFMWEILSRG---------AVGAIVLVDSSRPITFHAEE----IID 114

Query: 171 TDESLASCPVLILGNKIDKHGAASEEEIRQYF 202
              S    PV++  NK D   A   E+IR+  
Sbjct: 115 FLTSRNPIPVVVAINKQDLFDALPPEKIREAL 146

Length = 187

>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only]

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 23/138 (16%)

Query: 73  GLDNAGKTTLLHMLKDDR--LAQPVP-TLHPTRR--VWKDYFPAV--DAIVFLVDTSDRE 125
           G  NAGK+TL + L      +A  +  TL PT R     D    +  D + F+ D     
Sbjct: 199 GYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL-PHP 257

Query: 126 RFEESKSELQCLLTDESL-ASSIVFLVDTSD---RERFEESKSELQCLLTDESLASCPVL 181
             E  KS L+     E   A  ++ +VD SD    E+ E  +  L  +  DE     P++
Sbjct: 258 LVEAFKSTLE-----EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEI----PII 308

Query: 182 ILGNKIDKHGAASEEEIR 199
           ++ NKID      EE + 
Sbjct: 309 LVLNKIDL--LEDEEILA 324

Length = 411

>gnl|CDD|206666 cd01878, HflX, HflX GTPase family

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 26/139 (18%)

Query: 76  NAGKTTLLHML-KDDRLA--QPVPTLHPTRR--VWKDYFPAVDAIVFLVDT----SD--R 124
           NAGK+TL + L   D LA  Q   TL PT R          +     L DT     D   
Sbjct: 51  NAGKSTLFNALTGADVLAEDQLFATLDPTTRRIKLPGGREVL-----LTDTVGFIRDLPH 105

Query: 125 ERFEESKSELQCLLTDESL-ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
           +  E  +S L+     E   A  ++ +VD SD    EE    ++ +L +      P++++
Sbjct: 106 QLVEAFRSTLE-----EVAEADLLLHVVDASD-PDREEQIETVEEVLKELGADDIPIILV 159

Query: 184 GNKIDKHGAASEEEIRQYF 202
            NKID      +EE+ +  
Sbjct: 160 LNKIDL---LDDEELEERL 175

HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.97
KOG0092|consensus	200		99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
KOG0084|consensus	205		99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.97
KOG0094|consensus	221		99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.96
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.96
PTZ00369	189	Ras-like protein; Provisional	99.96
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.96
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.96
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.96
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.96
KOG0078|consensus	207		99.96
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.96
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.96
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.95
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.95
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.95
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.95
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.95
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.95
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.95
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.95
KOG0077|consensus	193		99.95
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.95
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.95
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.95
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.95
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.95
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.95
KOG0080|consensus	209		99.95
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.95
KOG0394|consensus	210		99.95
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.95
KOG0075|consensus	186		99.95
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.95
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.95
KOG0098|consensus	216		99.95
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.95
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.94
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.94
KOG0073|consensus	185		99.94
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.94
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.94
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.94
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.94
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.94
KOG0079|consensus	198		99.94
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.94
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.94
KOG0070|consensus	181		99.94
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.94
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.94
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.94
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.94
PLN03118	211	Rab family protein; Provisional	99.94
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.94
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.94
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.94
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.94
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.94
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.94
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.94
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.94
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.94
PLN03108	210	Rab family protein; Provisional	99.94
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.94
PLN03110	216	Rab GTPase; Provisional	99.94
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.94
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.94
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.94
KOG0087|consensus	222		99.93
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.93
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.93
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.93
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.93
KOG0091|consensus	213		99.93
COG1160	444	Predicted GTPases [General function prediction onl	99.93
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.93
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.93
KOG0093|consensus	193		99.93
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.93
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.93
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.92
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.92
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.92
KOG0071|consensus	180		99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.92
KOG0081|consensus	219		99.92
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.92
KOG0395|consensus	196		99.92
KOG0086|consensus	214		99.91
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.91
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.91
PRK12299	335	obgE GTPase CgtA; Reviewed	99.91
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.91
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.91
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.91
PRK15494	339	era GTPase Era; Provisional	99.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.9
KOG0088|consensus	218		99.9
KOG0076|consensus	197		99.9
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
KOG0074|consensus	185		99.9
COG1159	298	Era GTPase [General function prediction only]	99.9
KOG0095|consensus	213		99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.9
PRK12296	500	obgE GTPase CgtA; Reviewed	99.89
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.89
KOG0072|consensus	182		99.89
KOG0083|consensus	192		99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.88
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.88
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
PRK00089	292	era GTPase Era; Reviewed	99.87
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
cd00881	189	GTP_translation_factor GTP translation factor fami	99.87
PRK11058	426	GTPase HflX; Provisional	99.87
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.87
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.87
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.87
PRK04213	201	GTP-binding protein; Provisional	99.86
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.86
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.86
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.86
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.86
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.86
KOG0097|consensus	215		99.86
KOG1489|consensus	366		99.86
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.86
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.85
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.85
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.85
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.85
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.84
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.84
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.84
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.84
CHL00189	742	infB translation initiation factor 2; Provisional	99.84
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.84
PLN00023	334	GTP-binding protein; Provisional	99.83
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.83
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.83
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.83
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.83
PTZ00099	176	rab6; Provisional	99.83
PRK05306	787	infB translation initiation factor IF-2; Validated	99.82
PRK12317	425	elongation factor 1-alpha; Reviewed	99.82
COG1100	219	GTPase SAR1 and related small G proteins [General	99.82
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.82
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.82
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.81
COG2229	187	Predicted GTPase [General function prediction only	99.81
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.81
KOG0393|consensus	198		99.81
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.81
COG0486	454	ThdF Predicted GTPase [General function prediction	99.81
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.81
COG0536	369	Obg Predicted GTPase [General function prediction	99.8
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
COG2262	411	HflX GTPases [General function prediction only]	99.79
PRK05433	600	GTP-binding protein LepA; Provisional	99.79
COG0218	200	Predicted GTPase [General function prediction only	99.79
KOG4252|consensus	246		99.78
PRK04004	586	translation initiation factor IF-2; Validated	99.78
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.78
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.77
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.77
KOG1423|consensus	379		99.77
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.77
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.77
PRK09866	741	hypothetical protein; Provisional	99.76
PRK12735	396	elongation factor Tu; Reviewed	99.76
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.76
CHL00071	409	tufA elongation factor Tu	99.76
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.76
PRK10218	607	GTP-binding protein; Provisional	99.75
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.75
PRK03003	472	GTP-binding protein Der; Reviewed	99.75
KOG1532|consensus	366		99.75
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.75
COG1163	365	DRG Predicted GTPase [General function prediction	99.75
PRK00049	396	elongation factor Tu; Reviewed	99.75
KOG3883|consensus	198		99.75
PLN00043	447	elongation factor 1-alpha; Provisional	99.74
COG1084	346	Predicted GTPase [General function prediction only	99.74
KOG1145|consensus	683		99.74
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.74
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.73
PLN03127	447	Elongation factor Tu; Provisional	99.73
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.73
PTZ00141	446	elongation factor 1- alpha; Provisional	99.73
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.73
PRK13768	253	GTPase; Provisional	99.72
PLN03126	478	Elongation factor Tu; Provisional	99.71
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.71
COG1160	444	Predicted GTPases [General function prediction onl	99.71
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.7
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.69
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.69
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.69
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.69
PRK00093	435	GTP-binding protein Der; Reviewed	99.69
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.69
KOG0096|consensus	216		99.68
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.68
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.67
KOG0462|consensus	650		99.67
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.67
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.67
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.66
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.66
KOG0090|consensus	238		99.66
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.65
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.64
PRK13351	687	elongation factor G; Reviewed	99.64
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.64
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.63
KOG1707|consensus	625		99.63
PRK00007	693	elongation factor G; Reviewed	99.62
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.62
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.62
PRK12739	691	elongation factor G; Reviewed	99.61
KOG0458|consensus	603		99.61
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.61
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.6
PRK09602	396	translation-associated GTPase; Reviewed	99.59
KOG1191|consensus	531		99.59
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.59
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.58
KOG1144|consensus	1064		99.57
PTZ00258	390	GTP-binding protein; Provisional	99.57
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.55
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.55
KOG1673|consensus	205		99.54
PRK12740	668	elongation factor G; Reviewed	99.53
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.52
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.52
COG3596	296	Predicted GTPase [General function prediction only	99.48
PRK14845	1049	translation initiation factor IF-2; Provisional	99.48
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.47
PRK09601	364	GTP-binding protein YchF; Reviewed	99.46
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.46
KOG4423|consensus	229		99.46
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.43
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.43
KOG0463|consensus	641		99.43
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.42
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.4
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.4
KOG1490|consensus	620		99.37
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.36
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.36
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.36
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.35
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.33
PRK07560	731	elongation factor EF-2; Reviewed	99.32
KOG0461|consensus	522		99.31
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.29
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.29
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.28
PTZ00416	836	elongation factor 2; Provisional	99.26
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.25
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.25
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.25
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.23
KOG1143|consensus	591		99.22
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.21
KOG0410|consensus	410		99.21
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.2
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.17
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.17
KOG1486|consensus	364		99.16
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.14
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.13
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.12
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.09
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.01
KOG2486|consensus	320		99.0
PRK12289	352	GTPase RsgA; Reviewed	98.99
KOG1534|consensus	273		98.99
KOG1491|consensus	391		98.98
KOG0460|consensus	449		98.97
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.94
KOG0466|consensus	466		98.93
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.93
PRK00098	298	GTPase RsgA; Reviewed	98.89
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.88
KOG0468|consensus	971		98.88
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.87
PRK10416	318	signal recognition particle-docking protein FtsY;	98.87
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.87
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.86
PRK14974	336	cell division protein FtsY; Provisional	98.86
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.84
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.82
PRK12288	347	GTPase RsgA; Reviewed	98.81
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.81
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.78
KOG1487|consensus	358		98.77
KOG0448|consensus	749		98.77
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.76
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.74
cd03112	158	CobW_like The function of this protein family is u	98.74
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.73
KOG1954|consensus	532		98.73
KOG1707|consensus	625		98.72
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.7
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.65
KOG0082|consensus	354		98.64
KOG1533|consensus	290		98.62
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.62
KOG0459|consensus	501		98.61
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.58
KOG1547|consensus	336		98.56
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.56
COG0523	323	Putative GTPases (G3E family) [General function pr	98.56
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.56
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.53
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.53
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.52
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.5
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.49
KOG0467|consensus	887		98.48
KOG2655|consensus	366		98.48
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.47
KOG0705|consensus	749		98.44
KOG3905|consensus	473		98.44
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.44
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.43
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.42
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.41
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.41
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.4
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.4
PRK13796	365	GTPase YqeH; Provisional	98.37
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.37
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	98.36
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.34
PRK01889	356	GTPase RsgA; Reviewed	98.34
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.34
COG1161	322	Predicted GTPases [General function prediction onl	98.31
KOG0447|consensus	980		98.31
PRK10867	433	signal recognition particle protein; Provisional	98.31
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.3
cd03114	148	ArgK-like The function of this protein family is u	98.3
PRK12289	352	GTPase RsgA; Reviewed	98.29
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.29
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.28
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.28
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.28
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.28
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.27
PRK12288	347	GTPase RsgA; Reviewed	98.26
KOG0464|consensus	753		98.26
KOG0465|consensus	721		98.23
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.22
KOG3886|consensus	295		98.21
TIGR00959	428	ffh signal recognition particle protein. This mode	98.2
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.2
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.19
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.17
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.15
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.13
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.13
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.11
PRK13695	174	putative NTPase; Provisional	98.04
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.03
COG1162	301	Predicted GTPases [General function prediction onl	98.02
PRK00098	298	GTPase RsgA; Reviewed	98.0
PRK14737	186	gmk guanylate kinase; Provisional	97.99
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.97
PRK13796	365	GTPase YqeH; Provisional	97.96
COG1162	301	Predicted GTPases [General function prediction onl	97.95
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.95
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.93
PRK14738	206	gmk guanylate kinase; Provisional	97.9
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.89
KOG1486|consensus	364		97.86
KOG1424|consensus	562		97.84
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.82
KOG2485|consensus	335		97.8
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.79
KOG0780|consensus	483		97.79
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.77
KOG3886|consensus	295		97.76
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.73
KOG2203|consensus	772		97.72
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.68
KOG2743|consensus	391		97.68
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.65
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.65
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.63
cd03110	179	Fer4_NifH_child This protein family's function is	97.61
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.6
COG3523	1188	IcmF Type VI protein secretion system component Va	97.59
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.59
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.58
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.55
PRK08118	167	topology modulation protein; Reviewed	97.55
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.54
PRK08233	182	hypothetical protein; Provisional	97.54
PRK07261	171	topology modulation protein; Provisional	97.53
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.53
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.52
PRK14530	215	adenylate kinase; Provisional	97.52
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.52
KOG2484|consensus	435		97.5
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.5
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.49
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.49
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.49
PRK05480	209	uridine/cytidine kinase; Provisional	97.48
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.47
KOG0469|consensus	842		97.44
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.44
KOG2484|consensus	435		97.43
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.43
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.42
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.42
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.4
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.39
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.38
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.38
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.38
COG4181	228	Predicted ABC-type transport system involved in ly	97.37
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.36
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.36
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.36
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.35
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.35
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.33
KOG1424|consensus	562		97.33
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.33
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.33
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.33
smart00382	148	AAA ATPases associated with a variety of cellular	97.33
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.32
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.31
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.31
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.31
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.3
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.3
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.3
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.29
PRK01889	356	GTPase RsgA; Reviewed	97.29
PTZ00301	210	uridine kinase; Provisional	97.28
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.28
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.28
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.27
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.27
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.27
COG4559	259	ABC-type hemin transport system, ATPase component	97.26
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.26
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.26
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.26
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.26
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.26
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.26

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.97  E-value=4.5e-30  Score=191.65  Aligned_cols=184  Identities=52%  Similarity=0.829  Sum_probs=141.6

Q ss_pred             hHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHH
Q psy871            5 WDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLH   84 (249)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~   84 (249)
                      .|||.+.+.-+|.+.++++|+++|++|||||||++++.+..+....||.++....+                        
T Consensus         1 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~------------------------   56 (184)
T smart00178        1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEEL------------------------   56 (184)
T ss_pred             ChHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEE------------------------
Confidence            37888888877888999999999999999999999999876665555554332222                        


Q ss_pred             HHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH
Q psy871           85 MLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS  164 (249)
Q Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~  164 (249)
                                               ...+..+.+||+||++.+...+.      .++..+|++++|+|++++.++.....
T Consensus        57 -------------------------~~~~~~~~~~D~~G~~~~~~~~~------~~~~~ad~ii~vvD~~~~~~~~~~~~  105 (184)
T smart00178       57 -------------------------AIGNIKFTTFDLGGHQQARRLWK------DYFPEVNGIVYLVDAYDKERFAESKR  105 (184)
T ss_pred             -------------------------EECCEEEEEEECCCCHHHHHHHH------HHhCCCCEEEEEEECCcHHHHHHHHH
Confidence                                     01134688999999988776666      66788999999999999999988877


Q ss_pred             HHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871          165 ELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL  244 (249)
Q Consensus       165 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  244 (249)
                      ++.+++......++|+++|+||+|+......+++.+.+........     ..+...+.+.+++|||++|.|++++++||
T Consensus       106 ~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~-----~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl  180 (184)
T smart00178      106 ELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGS-----KGKVGVRPLEVFMCSVVRRMGYGEGFKWL  180 (184)
T ss_pred             HHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccc-----ccccCCceeEEEEeecccCCChHHHHHHH
Confidence            8887765544468999999999999877778888877754321100     00112356789999999999999999999


Q ss_pred             hhhc
Q psy871          245 ANYI  248 (249)
Q Consensus       245 ~~~i  248 (249)
                      .+++
T Consensus       181 ~~~~  184 (184)
T smart00178      181 SQYI  184 (184)
T ss_pred             HhhC
Confidence            8764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0092|consensus

Probab=99.97  E-value=1.4e-30  Score=185.23  Aligned_cols=161  Identities=22%  Similarity=0.265  Sum_probs=137.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++.||+|+|..++|||||+-|+..+.|.. ..||++...-+...                                   
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv-----------------------------------   47 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTV-----------------------------------   47 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEE-----------------------------------
Confidence            467899999999999999999999988875 46777755444411                                   


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                                .+.+....+.+|||.|+++|.++..      .+|+.++++|+|||+++.++|..++.|++++.+... ++
T Consensus        48 ----------~~~~~~ikfeIWDTAGQERy~slap------MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~  110 (200)
T KOG0092|consen   48 ----------TVDDNTIKFEIWDTAGQERYHSLAP------MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PN  110 (200)
T ss_pred             ----------EeCCcEEEEEEEEcCCccccccccc------ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CC
Confidence                      1122245688999999999999999      999999999999999999999999999999977654 67


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +-+.+|+||+||.+  ++..++...+....+                 ..+|++|||+|.|++++|..|.+.|
T Consensus       111 ~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-----------------ll~~ETSAKTg~Nv~~if~~Ia~~l  166 (200)
T KOG0092|consen  111 IVIALVGNKADLLERREVEFEEAQAYAESQG-----------------LLFFETSAKTGENVNEIFQAIAEKL  166 (200)
T ss_pred             eEEEEecchhhhhhcccccHHHHHHHHHhcC-----------------CEEEEEecccccCHHHHHHHHHHhc
Confidence            77888999999977  788899999998876                 8999999999999999999998865

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=5e-30  Score=188.63  Aligned_cols=162  Identities=25%  Similarity=0.393  Sum_probs=126.1

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ++++++|+++|++|||||||+++|..+.+....||.+.....+                                     
T Consensus         6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~-------------------------------------   48 (168)
T cd04149           6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV-------------------------------------   48 (168)
T ss_pred             CCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEE-------------------------------------
Confidence            3578899999999999999999998766554445544322111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                                  ...+..+.+||++|++++...+.      .++..+|++++|+|++++.++.....++.+++......+
T Consensus        49 ------------~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~  110 (168)
T cd04149          49 ------------TYKNVKFNVWDVGGQDKIRPLWR------HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRD  110 (168)
T ss_pred             ------------EECCEEEEEEECCCCHHHHHHHH------HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcC
Confidence                        11245699999999998877766      667889999999999999999888888888876544467


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      +|+++|+||+|+.+....+++.+.++...            .....++++++||++|.|++++|+||.+
T Consensus       111 ~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         111 ALLLVFANKQDLPDAMKPHEIQEKLGLTR------------IRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             CcEEEEEECcCCccCCCHHHHHHHcCCCc------------cCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            99999999999987667777777665322            1223468999999999999999999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.5e-29  Score=188.13  Aligned_cols=164  Identities=26%  Similarity=0.399  Sum_probs=127.9

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ++++.||+++|++|||||||++++..+++....||++.....+                                     
T Consensus        14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~-------------------------------------   56 (181)
T PLN00223         14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV-------------------------------------   56 (181)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEE-------------------------------------
Confidence            4778999999999999999999998766655455554322111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                                  ...+..+.+||+||++++...+.      .++..+|++++|+|+++++++.....++..++......+
T Consensus        57 ------------~~~~~~~~i~D~~Gq~~~~~~~~------~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~  118 (181)
T PLN00223         57 ------------EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD  118 (181)
T ss_pred             ------------EECCEEEEEEECCCCHHHHHHHH------HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCC
Confidence                        12245699999999998887777      667889999999999999999888878888766544468


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++++||+|+.+....+++...+....            ...+.+.+++|||++|+|++++++||.+.+
T Consensus       119 ~piilv~NK~Dl~~~~~~~~~~~~l~l~~------------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  177 (181)
T PLN00223        119 AVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
T ss_pred             CCEEEEEECCCCCCCCCHHHHHHHhCccc------------cCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence            99999999999988766677666554322            122345788999999999999999998865

>cd00879 Sar1 Sar1 subfamily

Probab=99.97  E-value=6.5e-29  Score=186.65  Aligned_cols=188  Identities=57%  Similarity=0.875  Sum_probs=139.7

Q ss_pred             hHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHH
Q psy871            5 WDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLH   84 (249)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~   84 (249)
                      -+|+-..+.-+|+..++.+|+++|++|||||||++++.+..+..+.||.+.....+                        
T Consensus         3 ~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i------------------------   58 (190)
T cd00879           3 FDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEEL------------------------   58 (190)
T ss_pred             HHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEE------------------------
Confidence            35667778889999999999999999999999999999877655555554332222                        


Q ss_pred             HHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH
Q psy871           85 MLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS  164 (249)
Q Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~  164 (249)
                                               ...+..+.+||+||+..+...+.      .++..+|++++|+|+++..++.....
T Consensus        59 -------------------------~~~~~~~~l~D~~G~~~~~~~~~------~~~~~ad~iilV~D~~~~~s~~~~~~  107 (190)
T cd00879          59 -------------------------TIGNIKFKTFDLGGHEQARRLWK------DYFPEVDGIVFLVDAADPERFQESKE  107 (190)
T ss_pred             -------------------------EECCEEEEEEECCCCHHHHHHHH------HHhccCCEEEEEEECCcHHHHHHHHH
Confidence                                     01124578999999887765554      55678999999999999988887777


Q ss_pred             HHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871          165 ELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL  244 (249)
Q Consensus       165 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  244 (249)
                      ++.+++......+.|+++++||+|+......+++.+.++........ .....+.....+++++|||++|+|++++|+||
T Consensus       108 ~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l  186 (190)
T cd00879         108 ELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGK-GVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWL  186 (190)
T ss_pred             HHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccc-cccccccCceeEEEEEeEecCCCChHHHHHHH
Confidence            88887765445679999999999998777788888777653311100 00000111234689999999999999999999


Q ss_pred             hhhc
Q psy871          245 ANYI  248 (249)
Q Consensus       245 ~~~i  248 (249)
                      .+++
T Consensus       187 ~~~~  190 (190)
T cd00879         187 SQYL  190 (190)
T ss_pred             HhhC
Confidence            8864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=5.2e-29  Score=185.48  Aligned_cols=164  Identities=27%  Similarity=0.426  Sum_probs=125.1

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ..++.||+++|++|||||||++++..+.+....||.+.....+                                     
T Consensus        14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~-------------------------------------   56 (182)
T PTZ00133         14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETV-------------------------------------   56 (182)
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEE-------------------------------------
Confidence            3556899999999999999999997666654445544222111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                                  ...+..+.+||++|++++...+.      .++..+|++++|+|++++.++.....++.+++......+
T Consensus        57 ------------~~~~~~~~l~D~~G~~~~~~~~~------~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~  118 (182)
T PTZ00133         57 ------------EYKNLKFTMWDVGGQDKLRPLWR------HYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRD  118 (182)
T ss_pred             ------------EECCEEEEEEECCCCHhHHHHHH------HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcC
Confidence                        12345799999999988887776      667899999999999999999988888888765544457


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+....+++...+....            ...+.+.++++||++|.|+++++++|.+.+
T Consensus       119 ~piilv~NK~Dl~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i  177 (182)
T PTZ00133        119 AVLLVFANKQDLPNAMSTTEVTEKLGLHS------------VRQRNWYIQGCCATTAQGLYEGLDWLSANI  177 (182)
T ss_pred             CCEEEEEeCCCCCCCCCHHHHHHHhCCCc------------ccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence            89999999999977656666655444321            122346788999999999999999998764

>KOG0084|consensus

Probab=99.97  E-value=1e-29  Score=181.49  Aligned_cols=160  Identities=26%  Similarity=0.293  Sum_probs=134.1

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .-+||+|+|.+|+|||+|+.|+.++.+. .+..|++.+.....                                     
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt-------------------------------------   50 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRT-------------------------------------   50 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEE-------------------------------------
Confidence            3469999999999999999999998887 56677776655542                                     


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                              ..+++....+.+|||+|+++|.++..      ++|+.+|++|+|+|+++..+|..+..|+.++-+. ...+.
T Consensus        51 --------~e~~gk~iKlQIWDTAGQERFrtit~------syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v  115 (205)
T KOG0084|consen   51 --------VELDGKTIKLQIWDTAGQERFRTITS------SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRY-ASENV  115 (205)
T ss_pred             --------eeecceEEEEEeeeccccHHHhhhhH------hhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhh-ccCCC
Confidence                    12344456799999999999998888      9999999999999999999999999999998544 34678


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCcee-EEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE-LFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |.++|+||||+.+  .+..++...+....+                 .+ ++++|||++.|+++.|..|+..|
T Consensus       116 ~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~-----------------~~~f~ETSAK~~~NVe~~F~~la~~l  171 (205)
T KOG0084|consen  116 PKLLVGNKCDLTEKRVVSTEEAQEFADELG-----------------IPIFLETSAKDSTNVEDAFLTLAKEL  171 (205)
T ss_pred             CeEEEeeccccHhheecCHHHHHHHHHhcC-----------------CcceeecccCCccCHHHHHHHHHHHH
Confidence            9999999999976  566677777777766                 56 99999999999999999988654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=4e-29  Score=185.14  Aligned_cols=164  Identities=26%  Similarity=0.404  Sum_probs=126.0

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      +++++||+++|++|||||||++++..+.+....||++.....+                                     
T Consensus        10 ~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~-------------------------------------   52 (175)
T smart00177       10 GNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETV-------------------------------------   52 (175)
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEE-------------------------------------
Confidence            3567999999999999999999997665544445444222111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                                  ......+.+||++|++++...+.      .++..+|++++|+|++++.++....+++..++......+
T Consensus        53 ------------~~~~~~l~l~D~~G~~~~~~~~~------~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~  114 (175)
T smart00177       53 ------------TYKNISFTVWDVGGQDKIRPLWR------HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRD  114 (175)
T ss_pred             ------------EECCEEEEEEECCCChhhHHHHH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcC
Confidence                        11235689999999988887776      667899999999999999999988888888876544457


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+....+++.+.+....            ...+.+.++++||++|.|++++++||.+.+
T Consensus       115 ~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      115 AVILVFANKQDLPDAMKAAEITEKLGLHS------------IRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             CcEEEEEeCcCcccCCCHHHHHHHhCccc------------cCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            99999999999987666666666554321            122346788999999999999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=3.2e-29  Score=185.25  Aligned_cols=175  Identities=39%  Similarity=0.573  Sum_probs=147.7

Q ss_pred             HHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHh
Q psy871            8 FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLK   87 (249)
Q Consensus         8 ~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~   87 (249)
                      |..++..+....++.+|+++|+.||||||++++|.........||.+.....+.                          
T Consensus         1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~--------------------------   54 (175)
T PF00025_consen    1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIK--------------------------   54 (175)
T ss_dssp             HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEE--------------------------
T ss_pred             CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceee--------------------------
Confidence            345666777779999999999999999999999998777777777776655551                          


Q ss_pred             cCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHH
Q psy871           88 DDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQ  167 (249)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~  167 (249)
                                             ..+..+.+||.+|+..+...++      .++..+|++++|+|+++.+.+....+.+.
T Consensus        55 -----------------------~~~~~~~~~d~gG~~~~~~~w~------~y~~~~~~iIfVvDssd~~~l~e~~~~L~  105 (175)
T PF00025_consen   55 -----------------------YKGYSLTIWDLGGQESFRPLWK------SYFQNADGIIFVVDSSDPERLQEAKEELK  105 (175)
T ss_dssp             -----------------------ETTEEEEEEEESSSGGGGGGGG------GGHTTESEEEEEEETTGGGGHHHHHHHHH
T ss_pred             -----------------------eCcEEEEEEeccccccccccce------eeccccceeEEEEecccceeecccccchh
Confidence                                   1346789999999998888888      77889999999999999999999988999


Q ss_pred             HHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          168 CLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       168 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +++......++|+++++||+|+.+....+++...+.....           ...+.+.++.|||++|+|+.+.++||.+.
T Consensus       106 ~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l-----------~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  106 ELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKL-----------KNKRPWSVFSCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             HHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGT-----------TSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             hhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhc-----------ccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence            9988777789999999999999988888888888775541           12456899999999999999999999986


Q ss_pred             c
Q psy871          248 I  248 (249)
Q Consensus       248 i  248 (249)
                      |
T Consensus       175 ~  175 (175)
T PF00025_consen  175 I  175 (175)
T ss_dssp             H
T ss_pred             C
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0094|consensus

Probab=99.97  E-value=2.1e-29  Score=179.30  Aligned_cols=168  Identities=23%  Similarity=0.234  Sum_probs=144.3

Q ss_pred             cccccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           13 GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        13 ~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      +..|.+.+..||+++|..++|||||++|++...+. .+.+|+|.+...-.                              
T Consensus        14 ~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt------------------------------   63 (221)
T KOG0094|consen   14 ATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKT------------------------------   63 (221)
T ss_pred             cccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEE------------------------------
Confidence            45577788899999999999999999999998887 67788886655542                              


Q ss_pred             ccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           92 AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                                     .++++....+.+|||+|+|+|..+..      ++++.+.++|.|+|.++..+|.+...|+....+
T Consensus        64 ---------------~~l~d~~vrLQlWDTAGQERFrslip------sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~  122 (221)
T KOG0094|consen   64 ---------------MYLEDRTVRLQLWDTAGQERFRSLIP------SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRR  122 (221)
T ss_pred             ---------------EEEcCcEEEEEEEecccHHHHhhhhh------hhccCCeEEEEEEeccccchHHHHHHHHHHHHh
Confidence                           23455567899999999999999999      999999999999999999999999999999988


Q ss_pred             ccCCCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          172 DESLASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.+..+.-+++|+||.||.+  +...++-+...+.++                 ..++++||+.|+|+.++|..++..+
T Consensus       123 e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~-----------------a~f~etsak~g~NVk~lFrrIaa~l  184 (221)
T KOG0094|consen  123 ERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELN-----------------AEFIETSAKAGENVKQLFRRIAAAL  184 (221)
T ss_pred             ccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhC-----------------cEEEEecccCCCCHHHHHHHHHHhc
Confidence            87666678899999999987  566677777777766                 7999999999999999999887654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=9.8e-29  Score=180.26  Aligned_cols=158  Identities=27%  Similarity=0.422  Sum_probs=120.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      .||+++|.+|||||||++++..+++....||.+.....+                                         
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~-----------------------------------------   39 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV-----------------------------------------   39 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEE-----------------------------------------
Confidence            389999999999999999997766654455554322111                                         


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                              ...+..+.+||++|++++...+.      .++..+|++++|+|++++.++.....++.+++......+.|++
T Consensus        40 --------~~~~~~~~l~D~~G~~~~~~~~~------~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii  105 (159)
T cd04150          40 --------EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLL  105 (159)
T ss_pred             --------EECCEEEEEEECCCCHhHHHHHH------HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEE
Confidence                    11245689999999988877776      6778999999999999999999888888887665444579999


Q ss_pred             EEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       182 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      +++||+|+.+....+++...+....            ...+.+.++++||++|+|++++|++|.+
T Consensus       106 lv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         106 VFANKQDLPNAMSAAEVTDKLGLHS------------LRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             EEEECCCCCCCCCHHHHHHHhCccc------------cCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            9999999976555555544442211            1223467899999999999999999975

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=2e-28  Score=181.19  Aligned_cols=166  Identities=33%  Similarity=0.464  Sum_probs=126.0

Q ss_pred             ccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      -....+++++|+++|++|||||||+++|.+..+....||.+.....+                                 
T Consensus         7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~---------------------------------   53 (173)
T cd04154           7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTL---------------------------------   53 (173)
T ss_pred             hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEE---------------------------------
Confidence            34556788999999999999999999998765444444433211111                                 


Q ss_pred             ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                                    .+  ....+.+||+||++.+...+.      .++..+|++++|+|++++.++.....++..++...
T Consensus        54 --------------~~--~~~~l~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  111 (173)
T cd04154          54 --------------EY--EGYKLNIWDVGGQKTLRPYWR------NYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE  111 (173)
T ss_pred             --------------EE--CCEEEEEEECCCCHHHHHHHH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh
Confidence                          01  135689999999988776655      55778999999999999999988877888776554


Q ss_pred             CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ...+.|+++|+||+|+.+....+++.+.++...            .....++++++||++|.|++++++++.+
T Consensus       112 ~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         112 RLAGATLLILANKQDLPGALSEEEIREALELDK------------ISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             hhcCCCEEEEEECcccccCCCHHHHHHHhCccc------------cCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            456899999999999987666677776665432            1223478999999999999999999875

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=4e-28  Score=179.69  Aligned_cols=162  Identities=28%  Similarity=0.455  Sum_probs=123.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++.++|+++|++|+|||||+++++.+.+....||.+.....+                                      
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~--------------------------------------   54 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEI--------------------------------------   54 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEE--------------------------------------
Confidence            457899999999999999999998776654444444322111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                                 ...+..+.+||+||++.+...+.      .++..+|++++|+|++++.++.....++.+++......++
T Consensus        55 -----------~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~  117 (174)
T cd04153          55 -----------VYKNIRFLMWDIGGQESLRSSWN------TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKA  117 (174)
T ss_pred             -----------EECCeEEEEEECCCCHHHHHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence                       11245789999999988877766      5678899999999999999998887788887765445679


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      |+++++||+|+......+++.+.+....            .....+++++|||++|.|+++++++|.++
T Consensus       118 p~viv~NK~Dl~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~SA~~g~gi~e~~~~l~~~  174 (174)
T cd04153         118 VLLVLANKQDLKGAMTPAEISESLGLTS------------IRDHTWHIQGCCALTGEGLPEGLDWIASR  174 (174)
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHhCccc------------ccCCceEEEecccCCCCCHHHHHHHHhcC
Confidence            9999999999977656666655544211            11233689999999999999999999763

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.96  E-value=3.5e-28  Score=179.54  Aligned_cols=159  Identities=19%  Similarity=0.279  Sum_probs=121.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ..||+++|.+|+|||||++++..+.+. ...||.+......                                       
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~---------------------------------------   42 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQ---------------------------------------   42 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEE---------------------------------------
Confidence            469999999999999999999988775 3445543111100                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             ..+.+....+.+||++|++++...+.      .++..+|++++|+|++++.+|..+..|+..+.......++|
T Consensus        43 -------~~~~~~~~~l~i~Dt~G~~~~~~l~~------~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p  109 (172)
T cd04141          43 -------ARIDNEPALLDILDTAGQAEFTAMRD------QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP  109 (172)
T ss_pred             -------EEECCEEEEEEEEeCCCchhhHHHhH------HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC
Confidence                   01123345688999999998888777      66788999999999999999999886655554332335799


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+.+  ....++..++.+...                 +++++|||++|.|++++|++|.+.+
T Consensus       110 iilvgNK~Dl~~~~~v~~~~~~~~a~~~~-----------------~~~~e~Sa~~~~~v~~~f~~l~~~~  163 (172)
T cd04141         110 LVLVGNKVDLESQRQVTTEEGRNLAREFN-----------------CPFFETSAALRHYIDDAFHGLVREI  163 (172)
T ss_pred             EEEEEEChhhhhcCccCHHHHHHHHHHhC-----------------CEEEEEecCCCCCHHHHHHHHHHHH
Confidence            999999999865  345556666665544                 7899999999999999999998753

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=4.4e-28  Score=178.66  Aligned_cols=160  Identities=33%  Similarity=0.479  Sum_probs=123.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      ||+++|++|||||||+++|.+..+..+.||++.....+                                          
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~------------------------------------------   38 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETV------------------------------------------   38 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEE------------------------------------------
Confidence            68999999999999999998876655555554222111                                          


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                             ...+..+.+||+||++++...+.      .++..+|++++|+|++++.++..+..++.++++.....+.|+++
T Consensus        39 -------~~~~~~i~l~Dt~G~~~~~~~~~------~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piil  105 (169)
T cd04158          39 -------EYKNLKFTIWDVGGKHKLRPLWK------HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLI  105 (169)
T ss_pred             -------EECCEEEEEEECCCChhcchHHH------HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEE
Confidence                   11245789999999987776665      56688999999999999999999888888887654445689999


Q ss_pred             EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+||+|+.+....+++.++++....           ...+.+.+++|||++|.|++++|+||.+.+
T Consensus       106 v~NK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~  160 (169)
T cd04158         106 FANKQDVAGALSVEEMTELLSLHKL-----------CCGRSWYIQGCDARSGMGLYEGLDWLSRQL  160 (169)
T ss_pred             EEeCcCcccCCCHHHHHHHhCCccc-----------cCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence            9999999877677777776643220           011236789999999999999999998754

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04121 Rab40 Rab40 subfamily

Probab=99.96  E-value=5.1e-28  Score=180.42  Aligned_cols=159  Identities=19%  Similarity=0.210  Sum_probs=124.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ...||+++|.+|+|||||+.++..+.+.. ..|+.+......                                      
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~--------------------------------------   46 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTT--------------------------------------   46 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEE--------------------------------------
Confidence            45799999999999999999998876542 223332211110                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                             ...+.+....+.+||++|++++...+.      .+++.+|++++|+|++++.+|..+..|+.++...  ..+.
T Consensus        47 -------~i~~~~~~~~l~iwDt~G~~~~~~l~~------~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~--~~~~  111 (189)
T cd04121          47 -------TILLDGRRVKLQLWDTSGQGRFCTIFR------SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH--APGV  111 (189)
T ss_pred             -------EEEECCEEEEEEEEeCCCcHHHHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCC
Confidence                   011123345789999999999988777      6678999999999999999999999888888543  2589


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+..  ....++.+++++...                 +++++|||++|.|++++|++|.+.+
T Consensus       112 piilVGNK~DL~~~~~v~~~~~~~~a~~~~-----------------~~~~e~SAk~g~~V~~~F~~l~~~i  166 (189)
T cd04121         112 PKILVGNRLHLAFKRQVATEQAQAYAERNG-----------------MTFFEVSPLCNFNITESFTELARIV  166 (189)
T ss_pred             CEEEEEECccchhccCCCHHHHHHHHHHcC-----------------CEEEEecCCCCCCHHHHHHHHHHHH
Confidence            9999999999965  556777888777655                 7899999999999999999998754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04175 Rap1 Rap1 subgroup

Probab=99.96  E-value=3.4e-28  Score=178.49  Aligned_cols=159  Identities=17%  Similarity=0.237  Sum_probs=121.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +.||+++|.+|||||||++++..+.+. .+.||.+.....                                        
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~----------------------------------------   40 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK----------------------------------------   40 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEE----------------------------------------
Confidence            469999999999999999999876543 223333211100                                        


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+.+....+.+|||||++++...+.      .++..+|++++|+|.++..+|..+..++..+.......+.|
T Consensus        41 ------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  108 (164)
T cd04175          41 ------QVEVDGQQCMLEILDTAGTEQFTAMRD------LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP  108 (164)
T ss_pred             ------EEEECCEEEEEEEEECCCcccchhHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence                  011223345678999999999988888      67788999999999999999999888888887654456899


Q ss_pred             EEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+...  ...++..++.+...                 ++++++||++|.|+++++.++.+++
T Consensus       109 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         109 MILVGNKCDLEDERVVGKEQGQNLARQWG-----------------CAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             EEEEEECCcchhccEEcHHHHHHHHHHhC-----------------CEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999999753  33444555555444                 7899999999999999999999876

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PTZ00369 Ras-like protein; Provisional

Probab=99.96  E-value=6.4e-28  Score=180.94  Aligned_cols=162  Identities=19%  Similarity=0.254  Sum_probs=123.5

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .++++||+++|.+|+|||||++++.++.+. ...||.+.....                                     
T Consensus         2 ~~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~-------------------------------------   44 (189)
T PTZ00369          2 ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRK-------------------------------------   44 (189)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEE-------------------------------------
Confidence            467899999999999999999999987664 333443311100                                     


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                               ...+++....+.+|||+|++++...+.      .+++.+|++++|+|++++++|..+..|+..+.+.....
T Consensus        45 ---------~~~~~~~~~~l~i~Dt~G~~~~~~l~~------~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~  109 (189)
T PTZ00369         45 ---------QCVIDEETCLLDILDTAGQEEYSAMRD------QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKD  109 (189)
T ss_pred             ---------EEEECCEEEEEEEEeCCCCccchhhHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence                     011223345678999999999888877      56788999999999999999999988888776544445


Q ss_pred             CCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.+.  ...++...+.+...                 .+++++||++|.|++++|.+|.+.+
T Consensus       110 ~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~-----------------~~~~e~Sak~~~gi~~~~~~l~~~l  166 (189)
T PTZ00369        110 RVPMILVGNKCDLDSERQVSTGEGQELAKSFG-----------------IPFLETSAKQRVNVDEAFYELVREI  166 (189)
T ss_pred             CCCEEEEEECcccccccccCHHHHHHHHHHhC-----------------CEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            8999999999998653  34445555554433                 6899999999999999999998764

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.96  E-value=8e-28  Score=176.05  Aligned_cols=160  Identities=19%  Similarity=0.283  Sum_probs=120.7

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +.||+++|++|||||||++++.++.+. ...||.+.....                                        
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~----------------------------------------   40 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK----------------------------------------   40 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEE----------------------------------------
Confidence            368999999999999999999987654 233333211000                                        


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+.+....+.+||++|++++...+.      .+++.++++++|+|.++..++..+..++..+.+.....+.|
T Consensus        41 ------~~~~~~~~~~~~i~Dt~G~~~~~~l~~------~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p  108 (162)
T cd04138          41 ------QVVIDGETCLLDILDTAGQEEYSAMRD------QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP  108 (162)
T ss_pred             ------EEEECCEEEEEEEEECCCCcchHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence                  011122234577899999998888777      67788999999999999999998887877776554446899


Q ss_pred             EEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          180 VLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       180 ~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      +++|+||+|+.+ .....+..+..+...                 .+++++||++|.|+++++++|.+.++
T Consensus       109 iivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (162)
T cd04138         109 MVLVGNKCDLAARTVSSRQGQDLAKSYG-----------------IPYIETSAKTRQGVEEAFYTLVREIR  162 (162)
T ss_pred             EEEEEECcccccceecHHHHHHHHHHhC-----------------CeEEEecCCCCCCHHHHHHHHHHHhC
Confidence            999999999975 334455555555444                 68999999999999999999998764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04136 Rap_like Rap-like subfamily

Probab=99.96  E-value=7.1e-28  Score=176.59  Aligned_cols=159  Identities=18%  Similarity=0.242  Sum_probs=118.8

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ++||+++|++|||||||++++..+.+. ...||.+.....                                        
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~----------------------------------------   40 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK----------------------------------------   40 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEE----------------------------------------
Confidence            369999999999999999999877654 223333210000                                        


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+.+....+.+||++|++++...+.      .+++.+|++++|+|++++.++..+..++..+.......+.|
T Consensus        41 ------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  108 (163)
T cd04136          41 ------QIEVDGQQCMLEILDTAGTEQFTAMRD------LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP  108 (163)
T ss_pred             ------EEEECCEEEEEEEEECCCccccchHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence                  011123345678999999999888777      56788999999999999999998888887776544446799


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+.+  ....++..++.+...                 .+++++||++|.|++++++++.+.+
T Consensus       109 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         109 MVLVGNKCDLEDERVVSREEGQALARQWG-----------------CPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             EEEEEECccccccceecHHHHHHHHHHcC-----------------CeEEEecCCCCCCHHHHHHHHHHhc
Confidence            999999999965  223344444444333                 7899999999999999999998865

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01875 RhoG RhoG subfamily

Probab=99.96  E-value=7.5e-28  Score=180.68  Aligned_cols=160  Identities=16%  Similarity=0.226  Sum_probs=118.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      |+..||+++|..|+|||||+.++..+.+. .+.||++......                                     
T Consensus         1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~-------------------------------------   43 (191)
T cd01875           1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQ-------------------------------------   43 (191)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEE-------------------------------------
Confidence            45689999999999999999999988774 4455554211100                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~  176 (249)
                               ..+.+....+.+|||+|++++...+.      .++..+|++++|+|++++.+|..+.. |+..+...  ..
T Consensus        44 ---------~~~~~~~~~l~i~Dt~G~e~~~~l~~------~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~  106 (191)
T cd01875          44 ---------TAVDGRTVSLNLWDTAGQEEYDRLRT------LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--CP  106 (191)
T ss_pred             ---------EEECCEEEEEEEEECCCchhhhhhhh------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CC
Confidence                     01223345689999999999998877      67889999999999999999999864 55555332  25


Q ss_pred             CCcEEEEEecCCCCCCC--------------CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871          177 SCPVLILGNKIDKHGAA--------------SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR  242 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  242 (249)
                      +.|+++|+||+|+.+..              ..++..++.+...                .+++++|||++|+|++++|.
T Consensus       107 ~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~----------------~~~~~e~SAk~g~~v~e~f~  170 (191)
T cd01875         107 NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH----------------AVKYLECSALNQDGVKEVFA  170 (191)
T ss_pred             CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC----------------CcEEEEeCCCCCCCHHHHHH
Confidence            79999999999996531              2223333333222                25899999999999999999


Q ss_pred             HHhhhc
Q psy871          243 WLANYI  248 (249)
Q Consensus       243 ~l~~~i  248 (249)
                      +|.+.+
T Consensus       171 ~l~~~~  176 (191)
T cd01875         171 EAVRAV  176 (191)
T ss_pred             HHHHHH
Confidence            998754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04120 Rab12 Rab12 subfamily

Probab=99.96  E-value=1.3e-27  Score=179.86  Aligned_cols=158  Identities=18%  Similarity=0.232  Sum_probs=120.3

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      .|+++|..|||||||++++..+.+.. +.||++......                                         
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~-----------------------------------------   40 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIK-----------------------------------------   40 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEE-----------------------------------------
Confidence            68999999999999999999887753 344544222111                                         


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                          ...+.+....+.+||++|++++...+.      .+++.+|++++|+|++++.+|..+..|+..+. .....+.|++
T Consensus        41 ----~i~~~~~~v~l~iwDtaGqe~~~~l~~------~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~-~~~~~~~pii  109 (202)
T cd04120          41 ----TVELRGKKIRLQIWDTAGQERFNSITS------AYYRSAKGIILVYDITKKETFDDLPKWMKMID-KYASEDAELL  109 (202)
T ss_pred             ----EEEECCEEEEEEEEeCCCchhhHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH-HhCCCCCcEE
Confidence                011123346789999999999988887      77889999999999999999999987776553 3334679999


Q ss_pred             EEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          182 ILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       182 vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+||+|+..  +...++..++.+...                .+.+++|||++|.|++++|++|.+.+
T Consensus       110 lVgNK~DL~~~~~v~~~~~~~~a~~~~----------------~~~~~etSAktg~gV~e~F~~l~~~~  162 (202)
T cd04120         110 LVGNKLDCETDREISRQQGEKFAQQIT----------------GMRFCEASAKDNFNVDEIFLKLVDDI  162 (202)
T ss_pred             EEEECcccccccccCHHHHHHHHHhcC----------------CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            9999999964  444555555554431                26899999999999999999998754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04133 Rop_like Rop subfamily

Probab=99.96  E-value=1.2e-27  Score=176.58  Aligned_cols=156  Identities=17%  Similarity=0.197  Sum_probs=122.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|.+|+|||||+.++..+.+. .+.||++......                                        
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~----------------------------------------   41 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN----------------------------------------   41 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEE----------------------------------------
Confidence            48999999999999999999988876 4566664222100                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCCCCc
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLASCP  179 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p  179 (249)
                            ..+.+....+.+|||+|++++...+.      .++..+|++++|+|.+++.+|..+ ..|+.++....  .+.|
T Consensus        42 ------~~~~~~~v~l~i~Dt~G~~~~~~~~~------~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~p  107 (176)
T cd04133          42 ------VSVDGNTVNLGLWDTAGQEDYNRLRP------LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVP  107 (176)
T ss_pred             ------EEECCEEEEEEEEECCCCccccccch------hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCC
Confidence                  11223346789999999999998887      678899999999999999999997 56777764432  5799


Q ss_pred             EEEEEecCCCCCC------------CCHHHHHHHhhhcccccCcccCCCCCCCCCce-eEEEeeeccccchHHHHHHHhh
Q psy871          180 VLILGNKIDKHGA------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI-ELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       180 ~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      +++|+||+|+.++            ...++..++.+...                 . ++++|||++|.|++++|..+.+
T Consensus       108 iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-----------------~~~~~E~SAk~~~nV~~~F~~~~~  170 (176)
T cd04133         108 IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG-----------------AAAYIECSSKTQQNVKAVFDAAIK  170 (176)
T ss_pred             EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC-----------------CCEEEECCCCcccCHHHHHHHHHH
Confidence            9999999999653            45666666666544                 4 6999999999999999999987


Q ss_pred             hc
Q psy871          247 YI  248 (249)
Q Consensus       247 ~i  248 (249)
                      .+
T Consensus       171 ~~  172 (176)
T cd04133         171 VV  172 (176)
T ss_pred             HH
Confidence            53

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=1.9e-27  Score=177.20  Aligned_cols=171  Identities=20%  Similarity=0.236  Sum_probs=125.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ...||+++|++|+|||||++++....+. ...||++......       .+.+.. ..+                     
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~-~~~---------------------   53 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREK-------RVVYNS-SGP---------------------   53 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEE-------EEEEcC-ccc---------------------
Confidence            3479999999999999999999987765 3445554332221       111111 110                     


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                      ..+      ........+.+||++|++++.....      .+++.+|++++|+|++++++|..+..|+..+.......+.
T Consensus        54 ~~~------~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  121 (180)
T cd04127          54 GGT------LGRGQRIHLQLWDTAGQERFRSLTT------AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENP  121 (180)
T ss_pred             ccc------ccCCCEEEEEEEeCCChHHHHHHHH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            000      0112235688999999998887776      6678899999999999999999998888887654334578


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.+  ....++..++.+...                 .+++++||++|.|+++++++|.+.+
T Consensus       122 piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         122 DIVLCGNKADLEDQRQVSEEQAKALADKYG-----------------IPYFETSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             cEEEEEeCccchhcCccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999965  345566777666654                 6899999999999999999998743

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.96  E-value=1.5e-27  Score=177.01  Aligned_cols=158  Identities=20%  Similarity=0.199  Sum_probs=122.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      +.++||+++|.+|+|||||++++..+.+. .+.||++......                                     
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~-------------------------------------   45 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-------------------------------------   45 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEE-------------------------------------
Confidence            45779999999999999999999988765 3455554211100                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~  176 (249)
                               ..+.+....+.+|||+|++++...+.      .++..+|++++|+|++++.+|..+ ..|+.++...  ..
T Consensus        46 ---------~~~~~~~~~l~iwDtaG~e~~~~~~~------~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~--~~  108 (182)
T cd04172          46 ---------FEIDTQRIELSLWDTSGSPYYDNVRP------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CP  108 (182)
T ss_pred             ---------EEECCEEEEEEEEECCCchhhHhhhh------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CC
Confidence                     11123345789999999999988877      678899999999999999999997 6677666443  25


Q ss_pred             CCcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc-hHHHH
Q psy871          177 SCPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG-YGDGF  241 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~  241 (249)
                      +.|+++|+||+|+.+              .+..++..++++..+                ..++++|||++|+| ++++|
T Consensus       109 ~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~----------------~~~~~E~SAk~~~n~v~~~F  172 (182)
T cd04172         109 NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG----------------AATYIECSALQSENSVRDIF  172 (182)
T ss_pred             CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC----------------CCEEEECCcCCCCCCHHHHH
Confidence            799999999999853              256677777777655                13899999999998 99999


Q ss_pred             HHHhh
Q psy871          242 RWLAN  246 (249)
Q Consensus       242 ~~l~~  246 (249)
                      ..+.+
T Consensus       173 ~~~~~  177 (182)
T cd04172         173 HVATL  177 (182)
T ss_pred             HHHHH
Confidence            98876

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=3e-27  Score=172.40  Aligned_cols=157  Identities=31%  Similarity=0.494  Sum_probs=115.0

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      ||+++|++++|||||+++|..+.+....||++.....                                           
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~-------------------------------------------   37 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVET-------------------------------------------   37 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEE-------------------------------------------
Confidence            6899999999999999999766554333333221111                                           


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                            +...+..+.+||+||++.+...+.      .+++.+|++++|+|++++.++.....++..++......+.|+++
T Consensus        38 ------~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piii  105 (158)
T cd04151          38 ------VTYKNLKFQVWDLGGQTSIRPYWR------CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLV  105 (158)
T ss_pred             ------EEECCEEEEEEECCCCHHHHHHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEE
Confidence                  112245689999999988877666      66788999999999999988877666776665544445799999


Q ss_pred             EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      |+||+|+.+.....++.+.+....            ......+++++||++|.|+++++++|.+
T Consensus       106 v~nK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         106 FANKQDMPGALSEAEISEKLGLSE------------LKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             EEeCCCCCCCCCHHHHHHHhCccc------------cCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            999999976555555544432211            1112368999999999999999999976

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04122 Rab14 Rab14 subfamily

Probab=99.96  E-value=3.1e-27  Score=173.73  Aligned_cols=158  Identities=21%  Similarity=0.241  Sum_probs=120.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|+|||||++++..+.+.. ..||.+......                                        
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~----------------------------------------   42 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR----------------------------------------   42 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEE----------------------------------------
Confidence            589999999999999999998876653 223333221111                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ...+.+....+.+||+||++++.....      .+++.+|++++|+|++++.+|..+..|+..+... ...+.|+
T Consensus        43 -----~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i  110 (166)
T cd04122          43 -----IIEVNGQKIKLQIWDTAGQERFRAVTR------SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVI  110 (166)
T ss_pred             -----EEEECCEEEEEEEEECCCcHHHHHHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeE
Confidence                 001123345688999999998887776      6678899999999999999999998888776432 2357899


Q ss_pred             EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+..+  ...++..++++...                 .++++|||++|.|++++|.++++.+
T Consensus       111 iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         111 FLIGNKADLEAQRDVTYEEAKQFADENG-----------------LLFLECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             EEEEECcccccccCcCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            999999999653  44566666666544                 7899999999999999999998754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0078|consensus

Probab=99.96  E-value=1.2e-27  Score=173.43  Aligned_cols=161  Identities=23%  Similarity=0.255  Sum_probs=133.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ....||+++|.++||||+++.++..+.+. ....|++.+...-.                                    
T Consensus        10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kt------------------------------------   53 (207)
T KOG0078|consen   10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKT------------------------------------   53 (207)
T ss_pred             ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEE------------------------------------
Confidence            34579999999999999999999998887 44456654433321                                    


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               ..+++....+.+|||.|+++|..+..      .+|+.++.+++|+|+++..+|.++..|+..+- +.....
T Consensus        54 ---------i~l~g~~i~lQiWDtaGQerf~ti~~------sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~-e~a~~~  117 (207)
T KOG0078|consen   54 ---------IELDGKKIKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDITNEKSFENIRNWIKNID-EHASDD  117 (207)
T ss_pred             ---------EEeCCeEEEEEEEEcccchhHHHHHH------HHHhhcCeeEEEEEccchHHHHHHHHHHHHHH-hhCCCC
Confidence                     11122456799999999999999999      89999999999999999999999998777764 334458


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|.++|+||+|+..  .++.+..++++...+                 ++++++|||+|.|+++.|..|++.+
T Consensus       118 v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G-----------------~~F~EtSAk~~~NI~eaF~~La~~i  173 (207)
T KOG0078|consen  118 VVKILVGNKCDLEEKRQVSKERGEALAREYG-----------------IKFFETSAKTNFNIEEAFLSLARDI  173 (207)
T ss_pred             CcEEEeeccccccccccccHHHHHHHHHHhC-----------------CeEEEccccCCCCHHHHHHHHHHHH
Confidence            99999999999977  778888999888887                 8999999999999999999998754

>cd04176 Rap2 Rap2 subgroup

Probab=99.96  E-value=2.3e-27  Score=173.96  Aligned_cols=160  Identities=16%  Similarity=0.236  Sum_probs=119.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ++||+++|.+|+|||||++++..+.+.. ..||.+.. ...                                       
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~---------------------------------------   40 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDF-YRK---------------------------------------   40 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhhe-EEE---------------------------------------
Confidence            4689999999999999999998876652 23333200 000                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+.+....+.+||++|++++...+.      .++..+|++++|+|++++.+|..+..++..+.......++|
T Consensus        41 ------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  108 (163)
T cd04176          41 ------EIEVDSSPSVLEILDTAGTEQFASMRD------LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP  108 (163)
T ss_pred             ------EEEECCEEEEEEEEECCCcccccchHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence                  011122334578999999999988877      56788999999999999999999888887776544446899


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      +++|+||+|+..  .....+.....+...                 .+++++||++|.|+++++.++.+.++
T Consensus       109 iviv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~l~  163 (163)
T cd04176         109 IILVGNKVDLESEREVSSAEGRALAEEWG-----------------CPFMETSAKSKTMVNELFAEIVRQMN  163 (163)
T ss_pred             EEEEEECccchhcCccCHHHHHHHHHHhC-----------------CEEEEecCCCCCCHHHHHHHHHHhcC
Confidence            999999999865  223334444444333                 68999999999999999999998874

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.96  E-value=2.9e-27  Score=173.55  Aligned_cols=160  Identities=21%  Similarity=0.235  Sum_probs=119.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ..||+++|++|+|||||++++.+..+. ...||.+.....                                        
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~----------------------------------------   41 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTK----------------------------------------   41 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEE----------------------------------------
Confidence            469999999999999999999876543 222222211000                                        


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+.+....+.+|||||++++.....      .++..+|++++|+|++++.++..+..++..+.......+.|
T Consensus        42 ------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  109 (164)
T cd04145          42 ------QCEIDGQWAILDILDTAGQEEFSAMRE------QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP  109 (164)
T ss_pred             ------EEEECCEEEEEEEEECCCCcchhHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence                  011223345688999999998887776      56678999999999999999999888888876654446899


Q ss_pred             EEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          180 VLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       180 ~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      +++++||+|+...  ...++..++.+...                 .+++++||++|.|++++|++|.+.++
T Consensus       110 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~~  164 (164)
T cd04145         110 MILVGNKADLEHQRKVSREEGQELARKLK-----------------IPYIETSAKDRLNVDKAFHDLVRVIR  164 (164)
T ss_pred             EEEEeeCccccccceecHHHHHHHHHHcC-----------------CcEEEeeCCCCCCHHHHHHHHHHhhC
Confidence            9999999999653  23445555555433                 68999999999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.96  E-value=3.4e-27  Score=178.74  Aligned_cols=160  Identities=21%  Similarity=0.172  Sum_probs=122.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||+++|.++.+. .+.||++.......                                       
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~---------------------------------------   41 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKV---------------------------------------   41 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEE---------------------------------------
Confidence            48999999999999999999987765 34455543211110                                       


Q ss_pred             ceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc---CCC
Q psy871          101 TRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE---SLA  176 (249)
Q Consensus       101 ~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~---~~~  176 (249)
                            ..+. +....+.+||++|++++...+.      .++..+|++++|+|++++.+|..+..|+..+....   ...
T Consensus        42 ------v~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~  109 (201)
T cd04107          42 ------IEWDPNTVVRLQLWDIAGQERFGGMTR------VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGE  109 (201)
T ss_pred             ------EEECCCCEEEEEEEECCCchhhhhhHH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCC
Confidence                  0011 2345688999999998887777      67789999999999999999999887777664321   235


Q ss_pred             CCcEEEEEecCCCC--CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKH--GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+++|+||+|+.  .....+++.++.+...                ..+++++||++|.|++++|++|.+.+
T Consensus       110 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~e~Sak~~~~v~e~f~~l~~~l  167 (201)
T cd04107         110 PIPCLLLANKCDLKKRLAKDGEQMDQFCKENG----------------FIGWFETSAKEGINIEEAMRFLVKNI  167 (201)
T ss_pred             CCcEEEEEECCCcccccccCHHHHHHHHHHcC----------------CceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            78999999999997  4566777777776543                15799999999999999999998764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.96  E-value=2.8e-27  Score=173.62  Aligned_cols=158  Identities=22%  Similarity=0.293  Sum_probs=118.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||++++.+..+.. ..||....   .                                        
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~---~----------------------------------------   37 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS---Y----------------------------------------   37 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh---E----------------------------------------
Confidence            489999999999999999998776542 22222100   0                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                       .  ......+....+.+||+||++++...+.      .+++.+|++++|+|++++.++..+..+...+.+.....+.|+
T Consensus        38 -~--~~~~~~~~~~~l~i~Dt~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi  108 (164)
T smart00173       38 -R--KQIEIDGEVCLLDILDTAGQEEFSAMRD------QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI  108 (164)
T ss_pred             -E--EEEEECCEEEEEEEEECCCcccchHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence             0  0011223345688999999998887777      567789999999999999999988877777765544467999


Q ss_pred             EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+..+  ...++..+..+...                 .+++++||++|.|+++++++|.+.+
T Consensus       109 i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~  161 (164)
T smart00173      109 VLVGNKCDLESERVVSTEEGKELARQWG-----------------CPFLETSAKERVNVDEAFYDLVREI  161 (164)
T ss_pred             EEEEECccccccceEcHHHHHHHHHHcC-----------------CEEEEeecCCCCCHHHHHHHHHHHH
Confidence            999999999653  34455555555443                 7899999999999999999998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.95  E-value=7e-27  Score=174.34  Aligned_cols=168  Identities=29%  Similarity=0.367  Sum_probs=124.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +..||+++|++|||||||++++....+....||.+.......+                                     
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~-------------------------------------   44 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKV-------------------------------------   44 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEe-------------------------------------
Confidence            3679999999999999999999887766555665533332210                                     


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             .........+.+|||+|++++...+.      .++..+|++++|+|++++.++.....++.++.......++|
T Consensus        45 -------~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p  111 (183)
T cd04152          45 -------SLGNSKGITFHFWDVGGQEKLRPLWK------SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP  111 (183)
T ss_pred             -------eccCCCceEEEEEECCCcHhHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc
Confidence                   00012345689999999988877666      56788999999999999988888777777776544446799


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+......+++...+.....           ......+++++||++|+|+++++++|.+.+
T Consensus       112 ~iiv~NK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l  169 (183)
T cd04152         112 VLVLANKQDLPNALSVSEVEKLLALHEL-----------SASTPWHVQPACAIIGEGLQEGLEKLYEMI  169 (183)
T ss_pred             EEEEEECcCccccCCHHHHHHHhCcccc-----------CCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence            9999999999776566666655542110           011236789999999999999999998765

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=3e-27  Score=173.66  Aligned_cols=157  Identities=18%  Similarity=0.211  Sum_probs=116.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|||||||++++....+. ...||.+.......                                       
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~---------------------------------------   41 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLD---------------------------------------   41 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEE---------------------------------------
Confidence            48999999999999999999876654 33444443222220                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            .........+.+|||+|++.+.....      ..+..+|++++|+|++++.++..+..|+..+....  .++|+
T Consensus        42 ------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~pi  107 (166)
T cd00877          42 ------FHTNRGKIRFNVWDTAGQEKFGGLRD------GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPI  107 (166)
T ss_pred             ------EEECCEEEEEEEEECCCChhhccccH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcE
Confidence                  00112235688999999988877666      55678999999999999999999888888876542  38999


Q ss_pred             EEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+.+.....+..++.+..                 ..+++++||++|.|++++|++|.+.+
T Consensus       108 iiv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~e~Sa~~~~~v~~~f~~l~~~~  158 (166)
T cd00877         108 VLCGNKVDIKDRKVKAKQITFHRKK-----------------NLQYYEISAKSNYNFEKPFLWLARKL  158 (166)
T ss_pred             EEEEEchhcccccCCHHHHHHHHHc-----------------CCEEEEEeCCCCCChHHHHHHHHHHH
Confidence            9999999997543333333333322                 27899999999999999999998754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.95  E-value=5.3e-27  Score=172.70  Aligned_cols=159  Identities=23%  Similarity=0.272  Sum_probs=120.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||+++|++.++. .+.||.+.......                                       
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~---------------------------------------   41 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKK---------------------------------------   41 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEE---------------------------------------
Confidence            48999999999999999999987764 34444443222110                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC----C
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL----A  176 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~----~  176 (249)
                            ....+....+.+|||+|++.+...+.      ..+..+|++++|+|.+++.++..+..|+.++......    .
T Consensus        42 ------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~  109 (168)
T cd04119          42 ------VSVRNKEVRVNFFDLSGHPEYLEVRN------EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNME  109 (168)
T ss_pred             ------EEECCeEEEEEEEECCccHHHHHHHH------HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCC
Confidence                  01123345788999999988877666      5568899999999999999999988888887654332    5


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.+  ....++...+.+...                 .+++++||++|.|+++++++|.+.+
T Consensus       110 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         110 NIVVVVCANKIDLTKHRAVSEDEGRLWAESKG-----------------FKYFETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             CceEEEEEEchhcccccccCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            699999999999973  334555555555433                 6899999999999999999998754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=5.6e-27  Score=171.34  Aligned_cols=159  Identities=33%  Similarity=0.484  Sum_probs=119.1

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      +|+++|++|||||||++++.+.++....||.+.....+.                                         
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~-----------------------------------------   39 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQ-----------------------------------------   39 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEE-----------------------------------------
Confidence            589999999999999999998876554555442222110                                         


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                             ......+.+||++|++.+...+.      .++..+|++++|+|++++.++.....++.+++......+.|+++
T Consensus        40 -------~~~~~~l~i~D~~G~~~~~~~~~------~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piil  106 (160)
T cd04156          40 -------LEKHLSLTVWDVGGQEKMRTVWK------CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVL  106 (160)
T ss_pred             -------eCCceEEEEEECCCCHhHHHHHH------HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEE
Confidence                   01235689999999987776665      55678999999999999998888888888887655446899999


Q ss_pred             EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      |+||+|+......+++...++....           .....+++++|||++|+|+++++++|.+
T Consensus       107 v~nK~Dl~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         107 LANKQDLPGALTAEEITRRFKLKKY-----------CSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             EEECcccccCcCHHHHHHHcCCccc-----------CCCCcEEEEecccccCCChHHHHHHHhc
Confidence            9999999765556666554432110           0113368999999999999999999975

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=6.1e-27  Score=171.44  Aligned_cols=158  Identities=29%  Similarity=0.466  Sum_probs=116.0

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCC--CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRL--AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +|+++|++|||||||+++|++...  ....||++.....                                         
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-----------------------------------------   39 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-----------------------------------------   39 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-----------------------------------------
Confidence            589999999999999999987642  2333444321111                                         


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--CCCC
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--LASC  178 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~  178 (249)
                              +...+..+.+||+||++++...+.      .++..+|++++|+|++++.++.....++..++....  ..++
T Consensus        40 --------~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (162)
T cd04157          40 --------FEKGNLSFTAFDMSGQGKYRGLWE------HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRV  105 (162)
T ss_pred             --------EEECCEEEEEEECCCCHhhHHHHH------HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCC
Confidence                    112345689999999998887776      567889999999999999988877777777755322  2479


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      |+++|+||+|+.++...+++.+.++...            .....++++++||++|.|+++++++|.++
T Consensus       106 p~iiv~NK~Dl~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~Sa~~g~gv~~~~~~l~~~  162 (162)
T cd04157         106 PILFFANKMDLPDALTAVKITQLLGLEN------------IKDKPWHIFASNALTGEGLDEGVQWLQAQ  162 (162)
T ss_pred             CEEEEEeCccccCCCCHHHHHHHhCCcc------------ccCceEEEEEeeCCCCCchHHHHHHHhcC
Confidence            9999999999987655555555443221            11123679999999999999999999753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.95  E-value=3.6e-27  Score=180.37  Aligned_cols=159  Identities=17%  Similarity=0.234  Sum_probs=121.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      +.++||+++|.+|||||||+++++.+.+. .+.||++.......                                    
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~------------------------------------   54 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD------------------------------------   54 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEE------------------------------------
Confidence            56789999999999999999999877765 45566554333221                                    


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               .........+.+||++|++++...+.      .++..+|++++|+|.+++.+|..+..|+..+...  ..+
T Consensus        55 ---------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~  117 (219)
T PLN03071         55 ---------FFTNCGKIRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN  117 (219)
T ss_pred             ---------EEECCeEEEEEEEECCCchhhhhhhH------HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCC
Confidence                     00112235788999999999887776      5678999999999999999999998888887643  357


Q ss_pred             CcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+... ...+++ ++.+..                 .+++++|||++|.|++++|.+|.+.+
T Consensus       118 ~piilvgNK~Dl~~~~v~~~~~-~~~~~~-----------------~~~~~e~SAk~~~~i~~~f~~l~~~~  171 (219)
T PLN03071        118 IPIVLCGNKVDVKNRQVKAKQV-TFHRKK-----------------NLQYYEISAKSNYNFEKPFLYLARKL  171 (219)
T ss_pred             CcEEEEEEchhhhhccCCHHHH-HHHHhc-----------------CCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence            999999999999653 233333 333322                 27899999999999999999998764

>cd04144 Ras2 Ras2 subfamily

Probab=99.95  E-value=4.8e-27  Score=176.32  Aligned_cols=157  Identities=21%  Similarity=0.229  Sum_probs=117.5

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ||+++|.+|||||||+++|+.+.+.. +.||.+......                                         
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~-----------------------------------------   39 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQ-----------------------------------------   39 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEE-----------------------------------------
Confidence            68999999999999999998876652 333332111000                                         


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--CCCCc
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--LASCP  179 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p  179 (249)
                           ..+.+....+.+|||+|++++...+.      .++..+|++++|+|+++..+|..+..++..+.....  ..+.|
T Consensus        40 -----~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p  108 (190)
T cd04144          40 -----VVVDGQPCMLEVLDTAGQEEYTALRD------QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP  108 (190)
T ss_pred             -----EEECCEEEEEEEEECCCchhhHHHHH------HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence                 11223345688999999998888777      677899999999999999999998888777654322  25789


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+..  ....++...+.+...                 ++++++||++|.|++++++++.+.+
T Consensus       109 iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~SAk~~~~v~~l~~~l~~~l  162 (190)
T cd04144         109 IMIVGNKCDKVYEREVSTEEGAALARRLG-----------------CEFIEASAKTNVNVERAFYTLVRAL  162 (190)
T ss_pred             EEEEEEChhccccCccCHHHHHHHHHHhC-----------------CEEEEecCCCCCCHHHHHHHHHHHH
Confidence            999999999964  334445555554444                 6899999999999999999998764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.95  E-value=6.9e-27  Score=178.78  Aligned_cols=157  Identities=21%  Similarity=0.188  Sum_probs=121.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ...||+++|++|+|||||++++..+.+. .+.||++......                                      
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~--------------------------------------   53 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAG--------------------------------------   53 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEE--------------------------------------
Confidence            3579999999999999999999988766 4455553221100                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLAS  177 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~  177 (249)
                              ..+.+....+.+|||+|+++|.....      .++..+|++++|+|++++.+|..+ ..|+.++...  ..+
T Consensus        54 --------i~~~~~~v~l~iwDTaG~e~~~~~~~------~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~--~~~  117 (232)
T cd04174          54 --------LETEEQRVELSLWDTSGSPYYDNVRP------LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDY--CPS  117 (232)
T ss_pred             --------EEECCEEEEEEEEeCCCchhhHHHHH------HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHh--CCC
Confidence                    01123345689999999999988877      678899999999999999999974 6677776543  257


Q ss_pred             CcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCce-eEEEeeecccc-chHHHH
Q psy871          178 CPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI-ELFMCSVLMRQ-GYGDGF  241 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~-gv~~l~  241 (249)
                      .|+++|+||+|+.+              .+..++..++++..+                 . .+++|||++|+ |++++|
T Consensus       118 ~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~-----------------~~~~~EtSAktg~~~V~e~F  180 (232)
T cd04174         118 TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG-----------------AEVYLECSAFTSEKSIHSIF  180 (232)
T ss_pred             CCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC-----------------CCEEEEccCCcCCcCHHHHH
Confidence            89999999999853              356677777777765                 5 69999999998 899999


Q ss_pred             HHHhhh
Q psy871          242 RWLANY  247 (249)
Q Consensus       242 ~~l~~~  247 (249)
                      ..+++.
T Consensus       181 ~~~~~~  186 (232)
T cd04174         181 RSASLL  186 (232)
T ss_pred             HHHHHH
Confidence            998764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.95  E-value=1e-26  Score=171.18  Aligned_cols=159  Identities=23%  Similarity=0.265  Sum_probs=121.4

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .+||+++|++|+|||||++++.+..+.. ..||.+......                                       
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~---------------------------------------   43 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIR---------------------------------------   43 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEE---------------------------------------
Confidence            4799999999999999999999877652 344443221111                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+.+....+.+||++|++.+.....      ..++.+|++++|+|++++.+|..+..|+..+... ...+.|
T Consensus        44 ------~~~~~~~~~~l~l~D~~g~~~~~~~~~------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p  110 (167)
T cd01867          44 ------TIELDGKKIKLQIWDTAGQERFRTITT------AYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH-ASEDVE  110 (167)
T ss_pred             ------EEEECCEEEEEEEEeCCchHHHHHHHH------HHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCc
Confidence                  001122335688999999988877665      5668899999999999999999988888777543 235789


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+.+  +...++..+..+...                 .+++++||++|.|++++|+++.+++
T Consensus       111 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         111 RMLVGNKCDMEEKRVVSKEEGEALADEYG-----------------IKFLETSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             EEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999975  345566666666544                 6899999999999999999998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01865 Rab3 Rab3 subfamily

Probab=99.95  E-value=1.1e-26  Score=170.55  Aligned_cols=158  Identities=24%  Similarity=0.270  Sum_probs=119.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|||||||+++|.+..+. ...||.+.......                                       
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~---------------------------------------   42 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKT---------------------------------------   42 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEE---------------------------------------
Confidence            58999999999999999999988765 23444432111110                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            ....+....+.+||++|++++...+.      ..++.+|++++|+|++++.++..+..|+..+... .....|+
T Consensus        43 ------~~~~~~~~~~~l~Dt~g~~~~~~~~~------~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~pi  109 (165)
T cd01865          43 ------VFRNDKRVKLQIWDTAGQERYRTITT------AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQV  109 (165)
T ss_pred             ------EEECCEEEEEEEEECCChHHHHHHHH------HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCCE
Confidence                  00112235688999999988877766      6678999999999999999999988888776433 2357899


Q ss_pred             EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+.+.  ...++..+..+...                 ++++++||++|.|+++++++|.+.+
T Consensus       110 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~l~~~~  162 (165)
T cd01865         110 ILVGNKCDMEDERVVSSERGRQLADQLG-----------------FEFFEASAKENINVKQVFERLVDII  162 (165)
T ss_pred             EEEEECcccCcccccCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            999999999653  33455555555444                 6899999999999999999998765

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04126 Rab20 Rab20 subfamily

Probab=99.95  E-value=9.1e-27  Score=177.15  Aligned_cols=168  Identities=22%  Similarity=0.238  Sum_probs=121.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      .||+++|.+|+|||||++++..+.+....||++......                                         
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~-----------------------------------------   39 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLK-----------------------------------------   39 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEE-----------------------------------------
Confidence            489999999999999999999888765555554322111                                         


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                              ......+.+||++|++.+.....      .++..+|++++|+|++++.+|..+..++..+... ...+.|++
T Consensus        40 --------~~~~~~l~iwDt~G~e~~~~l~~------~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piI  104 (220)
T cd04126          40 --------QWGPYNISIWDTAGREQFHGLGS------MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT-ANEDCLFA  104 (220)
T ss_pred             --------EeeEEEEEEEeCCCcccchhhHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEE
Confidence                    00123588999999998888777      5678999999999999999999998888777643 33579999


Q ss_pred             EEEecCCCCC---------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871          182 ILGNKIDKHG---------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG  240 (249)
Q Consensus       182 vv~nK~Dl~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  240 (249)
                      +|+||+|+.+                     .+..++..++.+.......-. .+.+  .....++++|||++|.|++++
T Consensus       105 lVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~-~~~~--~~~~~~~~E~SA~tg~~V~el  181 (220)
T cd04126         105 VVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD-EDLS--PAAEKMCFETSAKTGYNVDEL  181 (220)
T ss_pred             EEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc-cccc--ccccceEEEeeCCCCCCHHHH
Confidence            9999999864                     334566666665533000000 0000  011268999999999999999


Q ss_pred             HHHHhhhc
Q psy871          241 FRWLANYI  248 (249)
Q Consensus       241 ~~~l~~~i  248 (249)
                      |..+.+.+
T Consensus       182 f~~i~~~~  189 (220)
T cd04126         182 FEYLFNLV  189 (220)
T ss_pred             HHHHHHHH
Confidence            99998753

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.95  E-value=1.1e-26  Score=171.87  Aligned_cols=158  Identities=16%  Similarity=0.208  Sum_probs=114.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +.||+++|.+|+|||||+.++..+.+. .+.||.+......                                       
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~---------------------------------------   41 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN---------------------------------------   41 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEE---------------------------------------
Confidence            358999999999999999999987764 3445543111000                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCC
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASC  178 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~  178 (249)
                             ..+.+....+.+|||+|++.+...+.      .++..+|++++|+|++++++|..+.. |+..+...  ..+.
T Consensus        42 -------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~  106 (174)
T cd01871          42 -------VMVDGKPVNLGLWDTAGQEDYDRLRP------LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNT  106 (174)
T ss_pred             -------EEECCEEEEEEEEECCCchhhhhhhh------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCC
Confidence                   11223345688999999998887776      56788999999999999999999864 55555332  2579


Q ss_pred             cEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871          179 PVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL  244 (249)
Q Consensus       179 p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  244 (249)
                      |+++|+||+|+.+.              ...++..++.+..+                ..++++|||++|+|++++|+.+
T Consensus       107 piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~i~~~f~~l  170 (174)
T cd01871         107 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG----------------AVKYLECSALTQKGLKTVFDEA  170 (174)
T ss_pred             CEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC----------------CcEEEEecccccCCHHHHHHHH
Confidence            99999999999642              22333333333332                2589999999999999999999


Q ss_pred             hhhc
Q psy871          245 ANYI  248 (249)
Q Consensus       245 ~~~i  248 (249)
                      .+.+
T Consensus       171 ~~~~  174 (174)
T cd01871         171 IRAV  174 (174)
T ss_pred             HHhC
Confidence            8753

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1.7e-26  Score=168.38  Aligned_cols=158  Identities=34%  Similarity=0.518  Sum_probs=122.5

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      ||+++|++|||||||++++++.......+|.+.....+                                          
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~------------------------------------------   38 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETV------------------------------------------   38 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEE------------------------------------------
Confidence            68999999999999999999877554444444322222                                          


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                             ......+.+||+||++.+.....      ..+..+|++++|+|+++++++.....++..+.......+.|+++
T Consensus        39 -------~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piii  105 (158)
T cd00878          39 -------EYKNVSFTVWDVGGQDKIRPLWK------HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLI  105 (158)
T ss_pred             -------EECCEEEEEEECCCChhhHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEE
Confidence                   11145799999999988877666      56678999999999999999988887888877655457899999


Q ss_pred             EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ++||+|+......+++.+.+....            .....++++++||++|.|+++++++|.++
T Consensus       106 v~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~  158 (158)
T cd00878         106 FANKQDLPGALSVSELIEKLGLEK------------ILGRRWHIQPCSAVTGDGLDEGLDWLLQQ  158 (158)
T ss_pred             EeeccCCccccCHHHHHHhhChhh------------ccCCcEEEEEeeCCCCCCHHHHHHHHhhC
Confidence            999999987666666666655431            12234789999999999999999999753

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04140 ARHI_like ARHI subfamily

Probab=99.95  E-value=1.1e-26  Score=170.66  Aligned_cols=157  Identities=15%  Similarity=0.233  Sum_probs=114.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||+++++++.+. .+.||.+......                                        
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~----------------------------------------   41 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV----------------------------------------   41 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEE----------------------------------------
Confidence            58999999999999999999987764 2334333111000                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc--CCCCC
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE--SLASC  178 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~  178 (249)
                            .........+.+||++|++++.....      ..+..+|++++|+|++++.++..+..++..+....  ...+.
T Consensus        42 ------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~  109 (165)
T cd04140          42 ------ISCSKNICTLQITDTTGSHQFPAMQR------LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKI  109 (165)
T ss_pred             ------EEECCEEEEEEEEECCCCCcchHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence                  01122235688999999998877665      55678999999999999999988877765553321  12579


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      |+++|+||+|+..  ....++.........                 +++++|||++|.|++++|++|.+.
T Consensus       110 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         110 PIMLVGNKCDESHKREVSSNEGAACATEWN-----------------CAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             CEEEEEECccccccCeecHHHHHHHHHHhC-----------------CcEEEeecCCCCCHHHHHHHHHhc
Confidence            9999999999965  333444444444333                 689999999999999999999753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0077|consensus

Probab=99.95  E-value=2.2e-27  Score=164.40  Aligned_cols=192  Identities=52%  Similarity=0.817  Sum_probs=159.7

Q ss_pred             hHhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH
Q psy871            3 QIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL   82 (249)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl   82 (249)
                      -+|+||.+++.++|+++++-|++++|--|||||||+++|.+++.....||..++.+.+    ..                
T Consensus         2 fl~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l----~I----------------   61 (193)
T KOG0077|consen    2 FLFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL----SI----------------   61 (193)
T ss_pred             cHHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHh----ee----------------
Confidence            4899999999999999999999999999999999999999999999999999888887    22                


Q ss_pred             HHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh
Q psy871           83 LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES  162 (249)
Q Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~  162 (249)
                                                   ....+..+|..|+......+.      .++..+|++++++|+.+...|.+.
T Consensus        62 -----------------------------g~m~ftt~DLGGH~qArr~wk------dyf~~v~~iv~lvda~d~er~~es  106 (193)
T KOG0077|consen   62 -----------------------------GGMTFTTFDLGGHLQARRVWK------DYFPQVDAIVYLVDAYDQERFAES  106 (193)
T ss_pred             -----------------------------cCceEEEEccccHHHHHHHHH------HHHhhhceeEeeeehhhHHHhHHH
Confidence                                         233466777888766666666      667778888888888888888777


Q ss_pred             HHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871          163 KSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR  242 (249)
Q Consensus       163 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  242 (249)
                      +..+..++......+.|+++.+||+|.+.....+++...+...+...............+...+|.||...+.|.-+.+.
T Consensus       107 ~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fk  186 (193)
T KOG0077|consen  107 KKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFK  186 (193)
T ss_pred             HHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeee
Confidence            77888888777778999999999999999888888887777766555555555556667889999999999999999999


Q ss_pred             HHhhhcC
Q psy871          243 WLANYID  249 (249)
Q Consensus       243 ~l~~~i~  249 (249)
                      |+.+.|+
T Consensus       187 wl~qyi~  193 (193)
T KOG0077|consen  187 WLSQYIK  193 (193)
T ss_pred             ehhhhcC
Confidence            9988764

>cd04131 Rnd Rnd subfamily

Probab=99.95  E-value=8.5e-27  Score=172.71  Aligned_cols=155  Identities=20%  Similarity=0.168  Sum_probs=118.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|+|||||++++..+.+. .+.||++.....                                         
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-----------------------------------------   40 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTA-----------------------------------------   40 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEE-----------------------------------------
Confidence            58999999999999999999988765 344554311100                                         


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCCCCc
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLASCP  179 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p  179 (249)
                           ...+.+....+.+|||+|++.+.....      .++..+|++++|+|++++.+|..+ ..|+..+...  ..+.|
T Consensus        41 -----~~~~~~~~~~l~iwDt~G~~~~~~~~~------~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~--~~~~~  107 (178)
T cd04131          41 -----SFEIDEQRIELSLWDTSGSPYYDNVRP------LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEF--CPNTK  107 (178)
T ss_pred             -----EEEECCEEEEEEEEECCCchhhhhcch------hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHH--CCCCC
Confidence                 001123345689999999998887777      678899999999999999999985 6677666443  25799


Q ss_pred             EEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc-hHHHHHHH
Q psy871          180 VLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG-YGDGFRWL  244 (249)
Q Consensus       180 ~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l  244 (249)
                      +++|+||+|+.+              .+..++..++.+..+                ..++++|||++|+| ++++|..+
T Consensus       108 iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~----------------~~~~~E~SA~~~~~~v~~~F~~~  171 (178)
T cd04131         108 VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG----------------AEIYLECSAFTSEKSVRDIFHVA  171 (178)
T ss_pred             EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC----------------CCEEEECccCcCCcCHHHHHHHH
Confidence            999999999853              245566777666654                13799999999995 99999988


Q ss_pred             hh
Q psy871          245 AN  246 (249)
Q Consensus       245 ~~  246 (249)
                      .+
T Consensus       172 ~~  173 (178)
T cd04131         172 TM  173 (178)
T ss_pred             HH
Confidence            76

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04117 Rab15 Rab15 subfamily

Probab=99.95  E-value=1.9e-26  Score=168.64  Aligned_cols=157  Identities=18%  Similarity=0.266  Sum_probs=119.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .+|+++|++|+|||||++++..+++. .+.||++......                                        
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~----------------------------------------   40 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMK----------------------------------------   40 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEE----------------------------------------
Confidence            37999999999999999999988765 3345544322111                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ...+.+....+.+||++|.+++.....      .++..+|++++|+|++++.+|..+..|+.++... ...+.|+
T Consensus        41 -----~~~~~~~~~~l~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-~~~~~~i  108 (161)
T cd04117          41 -----TIEVDGIKVRIQIWDTAGQERYQTITK------QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY-APEGVQK  108 (161)
T ss_pred             -----EEEECCEEEEEEEEeCCCcHhHHhhHH------HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeE
Confidence                 011122235688999999988887766      5678899999999999999999998888777543 2357999


Q ss_pred             EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ++|+||+|+...  ...++.....+...                 .++++|||++|.|++++|.+|.+.
T Consensus       109 ilvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         109 ILIGNKADEEQKRQVGDEQGNKLAKEYG-----------------MDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             EEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHhh
Confidence            999999999653  34566666665544                 689999999999999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.95  E-value=1.7e-26  Score=169.75  Aligned_cols=159  Identities=24%  Similarity=0.252  Sum_probs=119.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .+||+++|++|+|||||++++.+..+. ...||.+......                                       
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~---------------------------------------   42 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR---------------------------------------   42 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE---------------------------------------
Confidence            369999999999999999999887664 2333433211111                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+.+....+.+||+||++++.....      ..++.+|++++|+|++++++|..+..|+..+... ...+.|
T Consensus        43 ------~~~~~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~-~~~~~~  109 (166)
T cd01869          43 ------TIELDGKTIKLQIWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY-ASENVN  109 (166)
T ss_pred             ------EEEECCEEEEEEEEECCCcHhHHHHHH------HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCc
Confidence                  011122335688999999998877776      5668899999999999999999988887776443 235789


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++++||+|+..  ....++..++.+...                 ++++++||++|.|+++++.++.+.+
T Consensus       110 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~~~~~i~~~~  163 (166)
T cd01869         110 KLLVGNKCDLTDKRVVDYSEAQEFADELG-----------------IPFLETSAKNATNVEQAFMTMAREI  163 (166)
T ss_pred             EEEEEEChhcccccCCCHHHHHHHHHHcC-----------------CeEEEEECCCCcCHHHHHHHHHHHH
Confidence            999999999865  344566666666544                 7899999999999999999998865

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=2e-26  Score=169.38  Aligned_cols=160  Identities=31%  Similarity=0.405  Sum_probs=121.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      .|+++|++|||||||++++++.....+.||++.....+                                          
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~------------------------------------------   38 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKL------------------------------------------   38 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEE------------------------------------------
Confidence            48999999999999999998763334455554322211                                          


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                             ...+..+.+||++|++.+...+.      .++..+|++++|+|++++.++.....++..++......++|+++
T Consensus        39 -------~~~~~~~~i~D~~G~~~~~~~~~------~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pili  105 (167)
T cd04161          39 -------RLDKYEVCIFDLGGGANFRGIWV------NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILV  105 (167)
T ss_pred             -------EECCEEEEEEECCCcHHHHHHHH------HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEE
Confidence                   11245688999999988777666      67789999999999999999998888888887665556899999


Q ss_pred             EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc------cchHHHHHHHhh
Q psy871          183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR------QGYGDGFRWLAN  246 (249)
Q Consensus       183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g------~gv~~l~~~l~~  246 (249)
                      |+||+|+.+.....++.+.+..-..         .......+.+++|||++|      .|+++.|+||..
T Consensus       106 v~NK~Dl~~~~~~~~i~~~~~l~~~---------~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         106 LANKQDKKNALLGADVIEYLSLEKL---------VNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             EEeCCCCcCCCCHHHHHHhcCcccc---------cCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            9999999887667777665542220         001123478999999998      899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.95  E-value=1.6e-26  Score=170.32  Aligned_cols=158  Identities=22%  Similarity=0.213  Sum_probs=119.0

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ||+++|++|||||||++++..+.+. .+.||++.......                                        
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~----------------------------------------   41 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMER----------------------------------------   41 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEE----------------------------------------
Confidence            7999999999999999999988775 44555553321110                                        


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                           ..+.+....+.+||++|++++...+.      .+++.+|++++|+|++++.++..+..|+.++.+.......|++
T Consensus        42 -----~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii  110 (170)
T cd04108          42 -----FEILGVPFSLQLWDTAGQERFKCIAS------TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLF  110 (170)
T ss_pred             -----EEECCEEEEEEEEeCCChHHHHhhHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence                 01122335688999999999888777      6678999999999999999999988888887655333457899


Q ss_pred             EEEecCCCCCCCC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          182 ILGNKIDKHGAAS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       182 vv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+||+|+.....    .++..++.+...                 .+++++||++|.|++++|+.|.+.+
T Consensus       111 lVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~g~~v~~lf~~l~~~~  164 (170)
T cd04108         111 LVGTKKDLSSPAQYALMEQDAIKLAAEMQ-----------------AEYWSVSALSGENVREFFFRVAALT  164 (170)
T ss_pred             EEEEChhcCccccccccHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            9999999865321    233344444333                 6799999999999999999998754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=1.6e-26  Score=170.11  Aligned_cols=119  Identities=34%  Similarity=0.477  Sum_probs=94.8

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      +..+.+||+||++.+.....      ..+..+|++++|+|++++.++.....++..+++.....++|+++++||+|+...
T Consensus        49 ~~~~~l~Dt~G~~~~~~~~~------~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~  122 (167)
T cd04160          49 NARLKFWDLGGQESLRSLWD------KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA  122 (167)
T ss_pred             CEEEEEEECCCChhhHHHHH------HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence            56789999999988877666      567889999999999999888887778887776554568999999999999877


Q ss_pred             CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ...++..+.++....          ......++++++||++|+|++++++||.++
T Consensus       123 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~  167 (167)
T cd04160         123 LSVEEIKEVFQDKAE----------EIGRRDCLVLPVSALEGTGVREGIEWLVER  167 (167)
T ss_pred             CCHHHHHHHhccccc----------cccCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence            666677666654321          012234789999999999999999999763

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04111 Rab39 Rab39 subfamily

Probab=99.95  E-value=2.1e-26  Score=175.21  Aligned_cols=161  Identities=21%  Similarity=0.282  Sum_probs=122.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .+||+++|++|+|||||+++|++..+.. ..||++......       .+                              
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~-------~i------------------------------   44 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSR-------LI------------------------------   44 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEE-------EE------------------------------
Confidence            4799999999999999999999877653 234433211111       00                              


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             ....+....+.+||++|++.+.....      .+++.+|++++|+|++++.+|..+..|+.++.........|
T Consensus        45 -------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~  111 (211)
T cd04111          45 -------EIEPGVRIKLQLWDTAGQERFRSITR------SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPV  111 (211)
T ss_pred             -------EECCCCEEEEEEEeCCcchhHHHHHH------HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCe
Confidence                   00012234688999999998877766      66788999999999999999999988888886554445678


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+..  ....++..++.+...                 ++++++||++|.|++++|++|.+.+
T Consensus       112 iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sak~g~~v~e~f~~l~~~~  165 (211)
T cd04111         112 FILVGHKCDLESQRQVTREEAEKLAKDLG-----------------MKYIETSARTGDNVEEAFELLTQEI  165 (211)
T ss_pred             EEEEEEccccccccccCHHHHHHHHHHhC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999965  345566666666544                 7899999999999999999998754

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.95  E-value=3e-26  Score=169.66  Aligned_cols=169  Identities=28%  Similarity=0.435  Sum_probs=124.3

Q ss_pred             hcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           12 LGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        12 ~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      ++...-..+.++|+++|++|||||||++++.+..+....||.+.....+                               
T Consensus         5 ~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i-------------------------------   53 (173)
T cd04155           5 LRKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTV-------------------------------   53 (173)
T ss_pred             HHHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEE-------------------------------
Confidence            3444555678999999999999999999998875554444443222111                               


Q ss_pred             ccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           92 AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                                        ......+.+||++|+..+.....      ..++.+|++++|+|+++..++.....++..++.
T Consensus        54 ------------------~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~  109 (173)
T cd04155          54 ------------------QSDGFKLNVWDIGGQRAIRPYWR------NYFENTDCLIYVIDSADKKRLEEAGAELVELLE  109 (173)
T ss_pred             ------------------EECCEEEEEEECCCCHHHHHHHH------HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence                              11134688999999877765555      456789999999999998888877777777765


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          172 DESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      .....++|+++++||+|+.+....+++.+.++...            ...+.++++++||++|+|++++++||++.
T Consensus       110 ~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  173 (173)
T cd04155         110 EEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHD------------LRDRTWHIQACSAKTGEGLQEGMNWVCKN  173 (173)
T ss_pred             ChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcc------------cCCCeEEEEEeECCCCCCHHHHHHHHhcC
Confidence            54446799999999999977655666655444322            22334678999999999999999999763

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01864 Rab19 Rab19 subfamily

Probab=99.95  E-value=3.2e-26  Score=168.21  Aligned_cols=161  Identities=19%  Similarity=0.188  Sum_probs=118.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..+||+++|++|||||||++++..+.+.. ..+|.+......                                      
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~--------------------------------------   43 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMK--------------------------------------   43 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEE--------------------------------------
Confidence            35799999999999999999998766542 223332211111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                             ...+.+....+.+||+||++.+.....      ..+..+|++++|+|++++.++..+..|+..+... ...+.
T Consensus        44 -------~~~~~~~~~~l~i~D~~G~~~~~~~~~------~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~-~~~~~  109 (165)
T cd01864          44 -------TLEIEGKRVKLQIWDTAGQERFRTITQ------SYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY-GASNV  109 (165)
T ss_pred             -------EEEECCEEEEEEEEECCChHHHHHHHH------HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCC
Confidence                   011122235688999999988877666      5567899999999999999999988888877543 23579


Q ss_pred             cEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.+.  ...++..+..+...                ...++++||++|.|++++++++.+.+
T Consensus       110 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~v~~~~~~l~~~l  165 (165)
T cd01864         110 VLLLIGNKCDLEEQREVLFEEACTLAEKNG----------------MLAVLETSAKESQNVEEAFLLMATEL  165 (165)
T ss_pred             cEEEEEECcccccccccCHHHHHHHHHHcC----------------CcEEEEEECCCCCCHHHHHHHHHHhC
Confidence            99999999999753  34455555555433                25789999999999999999998764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04109 Rab28 Rab28 subfamily

Probab=99.95  E-value=2.9e-26  Score=175.25  Aligned_cols=159  Identities=16%  Similarity=0.139  Sum_probs=119.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||+++|.+..+. .+.||.+......       .                                
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~-------~--------------------------------   41 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSK-------R--------------------------------   41 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEE-------E--------------------------------
Confidence            48999999999999999999987665 3444544322111       0                                


Q ss_pred             ceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--CCC
Q psy871          101 TRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--LAS  177 (249)
Q Consensus       101 ~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~  177 (249)
                            ..++ .....+.+||++|++.+.....      .+++.+|++++|+|++++.+|..+..|+..+.....  ...
T Consensus        42 ------i~~~~~~~~~~~i~Dt~G~~~~~~l~~------~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~  109 (215)
T cd04109          42 ------VTLPGNLNVTLQVWDIGGQSIGGKMLD------KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQ  109 (215)
T ss_pred             ------EEeCCCCEEEEEEEECCCcHHHHHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCC
Confidence                  0011 1235689999999988877776      567899999999999999999998877777654322  135


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++..++.+..+                 .+++++||++|.|++++|++|.+.+
T Consensus       110 ~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-----------------~~~~~iSAktg~gv~~lf~~l~~~l  165 (215)
T cd04109         110 PLVVLVGNKTDLEHNRTVKDDKHARFAQANG-----------------MESCLVSAKTGDRVNLLFQQLAAEL  165 (215)
T ss_pred             ceEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999964  344556666665544                 6899999999999999999998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0080|consensus

Probab=99.95  E-value=5.1e-27  Score=161.70  Aligned_cols=161  Identities=22%  Similarity=0.223  Sum_probs=136.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCC-CCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT-LHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      -.+||+++|.+|+|||||+-++..+.+....|+ ++.+...-.                                     
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~-------------------------------------   52 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKV-------------------------------------   52 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEE-------------------------------------
Confidence            357999999999999999999998888755554 664444331                                     


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                              ..+.+.+..+-+|||+|+++|..+..      ++|+.+..+|+|+|++..++|..+..|++++-....++++
T Consensus        53 --------m~vdg~~~KlaiWDTAGqErFRtLTp------SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~di  118 (209)
T KOG0080|consen   53 --------MQVDGKRLKLAIWDTAGQERFRTLTP------SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDI  118 (209)
T ss_pred             --------EEEcCceEEEEEEeccchHhhhccCH------hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccH
Confidence                    12345567799999999999999999      9999999999999999999999999899998666666788


Q ss_pred             cEEEEEecCCCC--CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKH--GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      -.++|+||+|..  +.+++++-..+++...                 .-+++|||++.+|+...|+.|...|
T Consensus       119 ikmlVgNKiDkes~R~V~reEG~kfAr~h~-----------------~LFiE~SAkt~~~V~~~FeelveKI  173 (209)
T KOG0080|consen  119 IKMLVGNKIDKESERVVDREEGLKFARKHR-----------------CLFIECSAKTRENVQCCFEELVEKI  173 (209)
T ss_pred             hHhhhcccccchhcccccHHHHHHHHHhhC-----------------cEEEEcchhhhccHHHHHHHHHHHH
Confidence            889999999987  4678899999999877                 7899999999999999999998765

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.95  E-value=2.2e-26  Score=170.36  Aligned_cols=156  Identities=18%  Similarity=0.226  Sum_probs=114.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|.+|+|||||++++..+.+. .+.||++......                                        
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~----------------------------------------   41 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT----------------------------------------   41 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEE----------------------------------------
Confidence            58999999999999999999988774 4556654211100                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCc
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCP  179 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p  179 (249)
                            ..+.+....+.+||++|++++...+.      .++..+|++++|+|++++++|..+.. |+..+...  ..+.|
T Consensus        42 ------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~~~~p  107 (175)
T cd01874          42 ------VMIGGEPYTLGLFDTAGQEDYDRLRP------LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTP  107 (175)
T ss_pred             ------EEECCEEEEEEEEECCCccchhhhhh------hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence                  01123345688999999998887776      57788999999999999999998864 55555332  25799


Q ss_pred             EEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871          180 VLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA  245 (249)
Q Consensus       180 ~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  245 (249)
                      +++|+||+|+.+.              ...++..++.+..                +.+.+++|||++|.|++++|+.+.
T Consensus       108 iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~----------------~~~~~~e~SA~tg~~v~~~f~~~~  171 (175)
T cd01874         108 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL----------------KAVKYVECSALTQKGLKNVFDEAI  171 (175)
T ss_pred             EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh----------------CCcEEEEecCCCCCCHHHHHHHHH
Confidence            9999999998643              1122222222222                236899999999999999999987


Q ss_pred             hh
Q psy871          246 NY  247 (249)
Q Consensus       246 ~~  247 (249)
                      +.
T Consensus       172 ~~  173 (175)
T cd01874         172 LA  173 (175)
T ss_pred             HH
Confidence            64

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=4.1e-26  Score=171.41  Aligned_cols=158  Identities=22%  Similarity=0.262  Sum_probs=118.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +||+++|++|||||||++++.+.++.  ...+|.+......                                       
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~---------------------------------------   41 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNK---------------------------------------   41 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEE---------------------------------------
Confidence            48999999999999999999887764  2333333221110                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+.+....+.+||+||++++.....      ..+..+|++++|+|+++++++..+..|+..+... ...+.|
T Consensus        42 ------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~p  108 (191)
T cd04112          42 ------VVTVDGVKVKLQIWDTAGQERFRSVTH------AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEY-AQEDVV  108 (191)
T ss_pred             ------EEEECCEEEEEEEEeCCCcHHHHHhhH------HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCc
Confidence                  001122345688999999988877666      5567899999999999999999888777776543 335789


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+..  ....++...+.+...                 .+++++||++|.|+++++.+|.+.+
T Consensus       109 iiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-----------------~~~~e~Sa~~~~~v~~l~~~l~~~~  162 (191)
T cd04112         109 IMLLGNKADMSGERVVKREDGERLAKEYG-----------------VPFMETSAKTGLNVELAFTAVAKEL  162 (191)
T ss_pred             EEEEEEcccchhccccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999963  344556666555444                 6899999999999999999998754

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.95  E-value=4.4e-26  Score=167.46  Aligned_cols=158  Identities=20%  Similarity=0.255  Sum_probs=119.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|||||||++++.+..+. ...||.+.......                                       
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~---------------------------------------   44 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRS---------------------------------------   44 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEE---------------------------------------
Confidence            59999999999999999999987755 33444443222110                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            ....+....+.+||+||++.+.....      .+++.++++++|+|++++.++..+..|+..+... ...+.|+
T Consensus        45 ------~~~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi  111 (165)
T cd01868          45 ------IQIDGKTIKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDITKKQTFENVERWLKELRDH-ADSNIVI  111 (165)
T ss_pred             ------EEECCEEEEEEEEeCCChHHHHHHHH------HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeE
Confidence                  01112234588999999988877766      5667899999999999999999988888776543 2346899


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+..  ....++...+.+...                 ++++++||++|.|++++++++.+.+
T Consensus       112 ~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         112 MLVGNKSDLRHLRAVPTEEAKAFAEKNG-----------------LSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             EEEEECccccccccCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            99999999965  334556666555433                 7899999999999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>KOG0394|consensus

Probab=99.95  E-value=3.7e-27  Score=166.21  Aligned_cols=160  Identities=24%  Similarity=0.275  Sum_probs=128.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ..||.++|.+|+|||||+|++....+. .+..|++...-..+                                      
T Consensus         9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKe--------------------------------------   50 (210)
T KOG0394|consen    9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKE--------------------------------------   50 (210)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeE--------------------------------------
Confidence            369999999999999999999988776 44555553333321                                      


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC---
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA---  176 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~---  176 (249)
                             ..+......+.+|||+|+++|+++..      ..|+.+|+.++|+|++++.+|+.+..|-.+++......   
T Consensus        51 -------v~Vd~~~vtlQiWDTAGQERFqsLg~------aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe  117 (210)
T KOG0394|consen   51 -------VQVDDRSVTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPE  117 (210)
T ss_pred             -------EEEcCeEEEEEEEecccHHHhhhccc------ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCC
Confidence                   12233345688999999999999987      88899999999999999999999999999998765432   


Q ss_pred             CCcEEEEEecCCCCC----CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          177 SCPVLILGNKIDKHG----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ..|+|+++||+|+..    .++.+.+.++++.-+                .+|||++|||.+.||++.|+.+.+.
T Consensus       118 ~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g----------------nipyfEtSAK~~~NV~~AFe~ia~~  176 (210)
T KOG0394|consen  118 TFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG----------------NIPYFETSAKEATNVDEAFEEIARR  176 (210)
T ss_pred             cccEEEEcccccCCCCccceeeHHHHHHHHHhcC----------------CceeEEecccccccHHHHHHHHHHH
Confidence            489999999999955    456677777777544                4999999999999999999988764

>cd04110 Rab35 Rab35 subfamily

Probab=99.95  E-value=4.3e-26  Score=172.33  Aligned_cols=159  Identities=22%  Similarity=0.270  Sum_probs=120.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..++|+++|++|||||||++++.+..+. .+.||.+......                                      
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~--------------------------------------   46 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR--------------------------------------   46 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEE--------------------------------------
Confidence            3679999999999999999999887765 3344443222111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                             .....+....+.+||+||++.+...+.      .++..++++++|+|++++.+|..+..|+..+...  ....
T Consensus        47 -------~~~~~~~~~~l~l~D~~G~~~~~~~~~------~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~  111 (199)
T cd04110          47 -------TVEINGERVKLQIWDTAGQERFRTITS------TYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN--CDDV  111 (199)
T ss_pred             -------EEEECCEEEEEEEEeCCCchhHHHHHH------HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCC
Confidence                   001122234588999999988877776      6678899999999999999999988888877543  2578


Q ss_pred             cEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+...  ...++..++.+...                 .+++++||++|.|++++|++|.+.+
T Consensus       112 piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~gi~~lf~~l~~~~  166 (199)
T cd04110         112 CKVLVGNKNDDPERKVVETEDAYKFAGQMG-----------------ISLFETSAKENINVEEMFNCITELV  166 (199)
T ss_pred             CEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEECCCCcCHHHHHHHHHHHH
Confidence            99999999999753  34455666665544                 7899999999999999999998753

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0075|consensus

Probab=99.95  E-value=6.9e-27  Score=158.65  Aligned_cols=179  Identities=28%  Similarity=0.391  Sum_probs=155.6

Q ss_pred             CchHhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCch
Q psy871            1 MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK   79 (249)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gk   79 (249)
                      |...|++.-.|+ +-.|+..+..+.++|..+||||||+|....+++. ...||.+.....+                   
T Consensus         1 m~~~~~k~L~wi-~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~-------------------   60 (186)
T KOG0075|consen    1 MCAKLRKKLVWI-CNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV-------------------   60 (186)
T ss_pred             ChhHHHHHHHHH-HHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe-------------------
Confidence            567788777777 4568999999999999999999999999887665 5667777666655                   


Q ss_pred             hHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhh
Q psy871           80 TTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF  159 (249)
Q Consensus        80 ssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~  159 (249)
                                                    ......+.+||.+|+.+|.+.++      .+...+++++||+|+++++.+
T Consensus        61 ------------------------------tkgnvtiklwD~gGq~rfrsmWe------rycR~v~aivY~VDaad~~k~  104 (186)
T KOG0075|consen   61 ------------------------------TKGNVTIKLWDLGGQPRFRSMWE------RYCRGVSAIVYVVDAADPDKL  104 (186)
T ss_pred             ------------------------------ccCceEEEEEecCCCccHHHHHH------HHhhcCcEEEEEeecCCcccc
Confidence                                          23345688999999999999999      888999999999999999999


Q ss_pred             HhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          160 EESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      ...+++++.++..+...++|+++++||.|+..+....++-..+....            ...+.+.+|.+|++...|++.
T Consensus       105 ~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~s------------itdREvcC~siScke~~Nid~  172 (186)
T KOG0075|consen  105 EASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSS------------ITDREVCCFSISCKEKVNIDI  172 (186)
T ss_pred             hhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccc------------cccceEEEEEEEEcCCccHHH
Confidence            99999999999998889999999999999999888888877777655            556779999999999999999


Q ss_pred             HHHHHhhh
Q psy871          240 GFRWLANY  247 (249)
Q Consensus       240 l~~~l~~~  247 (249)
                      +.+||.++
T Consensus       173 ~~~Wli~h  180 (186)
T KOG0075|consen  173 TLDWLIEH  180 (186)
T ss_pred             HHHHHHHH
Confidence            99999886

>cd01866 Rab2 Rab2 subfamily

Probab=99.95  E-value=6.5e-26  Score=166.99  Aligned_cols=158  Identities=22%  Similarity=0.205  Sum_probs=119.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCC-CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|||||||++++++..+... .+|.+.......                                       
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~---------------------------------------   45 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM---------------------------------------   45 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEE---------------------------------------
Confidence            6999999999999999999988766532 233332221110                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            .........+.+||++|++++.....      ..++.+|++++|+|++++.++..+..|+.++... ...+.|+
T Consensus        46 ------~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pv  112 (168)
T cd01866          46 ------ITIDGKQIKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SNSNMTI  112 (168)
T ss_pred             ------EEECCEEEEEEEEECCCcHHHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcE
Confidence                  01112234688999999988877766      5667899999999999999999988888777543 2367999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+.+  ....++..++.+...                 ++++++||+++.|++++|.++.+.+
T Consensus       113 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~i~~~~~~~~~~~  165 (168)
T cd01866         113 MLIGNKCDLESRREVSYEEGEAFAKEHG-----------------LIFMETSAKTASNVEEAFINTAKEI  165 (168)
T ss_pred             EEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999974  345566666665544                 7899999999999999999998764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04134 Rho3 Rho3 subfamily

Probab=99.95  E-value=3.3e-26  Score=171.56  Aligned_cols=157  Identities=20%  Similarity=0.243  Sum_probs=113.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||++++..+.+.. +.||++.....                                         
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-----------------------------------------   39 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-----------------------------------------   39 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-----------------------------------------
Confidence            489999999999999999999877652 33443211100                                         


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCCCCc
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLASCP  179 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p  179 (249)
                           .....+....+.+||++|++.+...+.      .++..+|++++|+|++++.+|..+. .|+..+...  ..+.|
T Consensus        40 -----~i~~~~~~~~l~i~Dt~G~~~~~~l~~------~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~p  106 (189)
T cd04134          40 -----DIFVDGLHIELSLWDTAGQEEFDRLRS------LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVK  106 (189)
T ss_pred             -----EEEECCEEEEEEEEECCCChhcccccc------ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence                 011123345688999999998877766      5678899999999999999998876 466666432  25799


Q ss_pred             EEEEEecCCCCCCCCH--------------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871          180 VLILGNKIDKHGAASE--------------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA  245 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  245 (249)
                      +++|+||+|+.+....              ++..++.+..                +.+++++|||++|.|++++|.+|.
T Consensus       107 iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------~~~~~~e~SAk~~~~v~e~f~~l~  170 (189)
T cd04134         107 LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRI----------------NALRYLECSAKLNRGVNEAFTEAA  170 (189)
T ss_pred             EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc----------------CCCEEEEccCCcCCCHHHHHHHHH
Confidence            9999999999764222              1222222221                226899999999999999999998


Q ss_pred             hhc
Q psy871          246 NYI  248 (249)
Q Consensus       246 ~~i  248 (249)
                      +.+
T Consensus       171 ~~~  173 (189)
T cd04134         171 RVA  173 (189)
T ss_pred             HHH
Confidence            753

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0098|consensus

Probab=99.95  E-value=1.8e-26  Score=163.03  Aligned_cols=158  Identities=21%  Similarity=0.201  Sum_probs=133.2

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      -.|+.++|..|+|||+|+.+++...|. ....|++...+.-                                       
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r---------------------------------------   46 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGAR---------------------------------------   46 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeecee---------------------------------------
Confidence            358999999999999999999998877 3444555333322                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+++....+.+|||+|++.|.++..      ++|+.+...++|+|+++.++|.++..|+..+... ...+..
T Consensus        47 ------~~~id~k~IKlqiwDtaGqe~frsv~~------syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~-~~~Nmv  113 (216)
T KOG0098|consen   47 ------MVTIDGKQIKLQIWDTAGQESFRSVTR------SYYRGAAGALLVYDITRRESFNHLTSWLEDARQH-SNENMV  113 (216)
T ss_pred             ------EEEEcCceEEEEEEecCCcHHHHHHHH------HHhccCcceEEEEEccchhhHHHHHHHHHHHHHh-cCCCcE
Confidence                  123445566799999999999999999      9999999999999999999999999999998654 357899


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +++++||+||..  +++.++.+.+++...                 ..++++||++++|+++.|......
T Consensus       114 ImLiGNKsDL~~rR~Vs~EEGeaFA~ehg-----------------LifmETSakt~~~VEEaF~nta~~  166 (216)
T KOG0098|consen  114 IMLIGNKSDLEARREVSKEEGEAFAREHG-----------------LIFMETSAKTAENVEEAFINTAKE  166 (216)
T ss_pred             EEEEcchhhhhccccccHHHHHHHHHHcC-----------------ceeehhhhhhhhhHHHHHHHHHHH
Confidence            999999999955  788999999999877                 889999999999999999877654

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.95  E-value=4.6e-26  Score=166.82  Aligned_cols=156  Identities=21%  Similarity=0.256  Sum_probs=118.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|+|||||+++++++.+. ...||++......       .                                
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~-------~--------------------------------   41 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEK-------Q--------------------------------   41 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEE-------E--------------------------------
Confidence            38999999999999999999987654 2233333211100       0                                


Q ss_pred             ceeceecccc--ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871          101 TRRVWKDYFP--AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus       101 ~~~~~~~~~~--~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                            ..+.  +....+.+||+||++++.....      .+++.+|++++|+|++++.++..+..|+..+...  ..+.
T Consensus        42 ------~~~~~~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~  107 (162)
T cd04106          42 ------IFLRQSDEDVRLMLWDTAGQEEFDAITK------AYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDI  107 (162)
T ss_pred             ------EEEcCCCCEEEEEEeeCCchHHHHHhHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCC
Confidence                  0011  2245689999999998887776      6678999999999999999999888787776432  3579


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      |+++|+||+|+..  ....++...+.+..+                 ++++++||++|.|+++++++|.+.
T Consensus       108 p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         108 PMVLVQTKIDLLDQAVITNEEAEALAKRLQ-----------------LPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             CEEEEEEChhcccccCCCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHh
Confidence            9999999999965  344566666666555                 689999999999999999999864

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01863 Rab18 Rab18 subfamily

Probab=99.94  E-value=9.6e-26  Score=164.97  Aligned_cols=159  Identities=23%  Similarity=0.269  Sum_probs=120.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|||||||+++|++..+.. ..|+.+.......                                       
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~---------------------------------------   41 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKT---------------------------------------   41 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEE---------------------------------------
Confidence            489999999999999999998776542 3344332221110                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            ..+......+.+||+||++.+.....      ..++.+|++++|+|.+++.++..+..++..+.......+.|+
T Consensus        42 ------~~~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~  109 (161)
T cd01863          42 ------LTVDGKKVKLAIWDTAGQERFRTLTS------SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVK  109 (161)
T ss_pred             ------EEECCEEEEEEEEECCCchhhhhhhH------HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcE
Confidence                  00122335689999999888776665      456789999999999999999988887777765545578999


Q ss_pred             EEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+.. ....++..++.+...                 ++++++||++|.|++++++.+.+.+
T Consensus       110 ~iv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~~~~~~~~~~  161 (161)
T cd01863         110 MLVGNKIDKENREVTREEGLKFARKHN-----------------MLFIETSAKTRDGVQQAFEELVEKI  161 (161)
T ss_pred             EEEEECCcccccccCHHHHHHHHHHcC-----------------CEEEEEecCCCCCHHHHHHHHHHhC
Confidence            99999999974 445566666666544                 7899999999999999999998764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.94  E-value=8.6e-26  Score=165.54  Aligned_cols=159  Identities=21%  Similarity=0.258  Sum_probs=121.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +.||+++|++|||||||+++|.+.++.. ..||.+.......                                      
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--------------------------------------   42 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQT--------------------------------------   42 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEE--------------------------------------
Confidence            4699999999999999999999887653 4444432221110                                      


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             ..+...+..+.+||+||++++.....      ..++.+|++++|+|++++.++.....++..+.... ..+.|
T Consensus        43 -------v~~~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~  108 (163)
T cd01860          43 -------VNLDDTTVKFEIWDTAGQERYRSLAP------MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNA-SPNII  108 (163)
T ss_pred             -------EEECCEEEEEEEEeCCchHHHHHHHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCe
Confidence                   01122345688999999988877666      45678999999999999999998888888776543 26799


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++++||+|+..  ....++.....+...                 ++++++||++|.|+++++++|.+.|
T Consensus       109 iivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         109 IALVGNKADLESKRQVSTEEAQEYADENG-----------------LLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             EEEEEECccccccCcCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            999999999874  334556666555443                 7899999999999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG0073|consensus

Probab=99.94  E-value=5.2e-26  Score=157.34  Aligned_cols=171  Identities=31%  Similarity=0.425  Sum_probs=144.5

Q ss_pred             hcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           12 LGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        12 ~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      ++-.+...++.+|.++|..||||||++++|.+.......||.+....++.                              
T Consensus         7 lrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~------------------------------   56 (185)
T KOG0073|consen    7 LRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLE------------------------------   56 (185)
T ss_pred             HHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEE------------------------------
Confidence            34445556799999999999999999999998887777778777666662                              


Q ss_pred             ccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           92 AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                                         ..+..+.+||..|+..+.+.+.      +|++..|++|+|+|++++-.+++....+.+++.
T Consensus        57 -------------------~~~~~L~iwDvGGq~~lr~~W~------nYfestdglIwvvDssD~~r~~e~~~~L~~lL~  111 (185)
T KOG0073|consen   57 -------------------YKGYTLNIWDVGGQKTLRSYWK------NYFESTDGLIWVVDSSDRMRMQECKQELTELLV  111 (185)
T ss_pred             -------------------ecceEEEEEEcCCcchhHHHHH------HhhhccCeEEEEEECchHHHHHHHHHHHHHHHh
Confidence                               2356799999999999999999      899999999999999999999998889999998


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          172 DESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +....+.|+++++||.|+......+++...+.....           ....+++++.|||.+|+++.+.++||...+
T Consensus       112 eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l-----------~ks~~~~l~~cs~~tge~l~~gidWL~~~l  177 (185)
T KOG0073|consen  112 EERLAGAPLLVLANKQDLPGALSLEEISKALDLEEL-----------AKSHHWRLVKCSAVTGEDLLEGIDWLCDDL  177 (185)
T ss_pred             hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHh-----------ccccCceEEEEeccccccHHHHHHHHHHHH
Confidence            888889999999999999987788888766654431           133569999999999999999999998754

>cd04124 RabL2 RabL2 subfamily

Probab=99.94  E-value=4.7e-26  Score=166.55  Aligned_cols=156  Identities=17%  Similarity=0.193  Sum_probs=113.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCC-CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|.+|+|||||++++..+.+... .++.+......                                        
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------   40 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKH----------------------------------------   40 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEE----------------------------------------
Confidence            4899999999999999999987765421 12222111100                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ...+.+....+.+|||+|++++.....      .+++.+|++++|+|++++.++..+..|+..+...  ..+.|+
T Consensus        41 -----~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~  107 (161)
T cd04124          41 -----NAKFEGKTILVDFWDTAGQERFQTMHA------SYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPC  107 (161)
T ss_pred             -----EEEECCEEEEEEEEeCCCchhhhhhhH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcE
Confidence                 011223345688999999999888777      6778999999999999999999888787777442  257999


Q ss_pred             EEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+... ..++..++.+...                 ++++++||++|.|++++++.+.+.+
T Consensus       108 ivv~nK~Dl~~~-~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (161)
T cd04124         108 IVVANKIDLDPS-VTQKKFNFAEKHN-----------------LPLYYVSAADGTNVVKLFQDAIKLA  157 (161)
T ss_pred             EEEEECccCchh-HHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999998542 1222233322222                 6899999999999999999998753

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.94  E-value=6.7e-26  Score=167.23  Aligned_cols=161  Identities=20%  Similarity=0.191  Sum_probs=118.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      |.+||+++|++|+|||||+++++...+. ...+|++......                                      
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~--------------------------------------   42 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRER--------------------------------------   42 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEE--------------------------------------
Confidence            3579999999999999999999876654 2333332111110                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                             ...+.+....+.+||++|++++.. ...      .+++.+|++++|+|++++.++..+..|+..+.......+
T Consensus        43 -------~~~~~~~~~~~~i~Dt~G~~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  109 (170)
T cd04115          43 -------TVEIDGERIKVQLWDTAGQERFRKSMVQ------HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE  109 (170)
T ss_pred             -------EEEECCeEEEEEEEeCCChHHHHHhhHH------HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCC
Confidence                   011123345688999999987753 344      456789999999999999999999888877765444467


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecc---ccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLM---RQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---g~gv~~l~~~l~~~i  248 (249)
                      +|+++|+||+|+..  ....++..++.+...                 ++++++||++   +.|++++|..|.+.+
T Consensus       110 ~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         110 VPRILVGNKCDLREQIQVPTDLAQRFADAHS-----------------MPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             CCEEEEEECccchhhcCCCHHHHHHHHHHcC-----------------CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            99999999999865  334455555555433                 7899999999   999999999998875

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04113 Rab4 Rab4 subfamily

Probab=99.94  E-value=8.7e-26  Score=165.19  Aligned_cols=158  Identities=20%  Similarity=0.233  Sum_probs=118.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||+++|.+..+.. ..++.+......                                        
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------   40 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSK----------------------------------------   40 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEE----------------------------------------
Confidence            489999999999999999998876542 223332111111                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ...+.+....+.+||+||++.+.....      ..++.+|++++|+|++++.++..+..|+..+... ...+.|+
T Consensus        41 -----~~~~~~~~~~l~l~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i  108 (161)
T cd04113          41 -----IIRVGGKRVKLQIWDTAGQERFRSVTR------SYYRGAAGALLVYDITNRTSFEALPTWLSDARAL-ASPNIVV  108 (161)
T ss_pred             -----EEEECCEEEEEEEEECcchHHHHHhHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeE
Confidence                 001112235688999999988877666      5567899999999999999999988777766432 3368999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++++||+|+..  ....++...+.+...                 ++++++||+++.|++++++++.+.+
T Consensus       109 ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~~~~~~~~~~  161 (161)
T cd04113         109 ILVGNKSDLADQREVTFLEASRFAQENG-----------------LLFLETSALTGENVEEAFLKCARSI  161 (161)
T ss_pred             EEEEEchhcchhccCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            99999999965  344566666666544                 7899999999999999999998764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04128 Spg1 Spg1p

Probab=99.94  E-value=5.9e-26  Score=168.90  Aligned_cols=157  Identities=17%  Similarity=0.164  Sum_probs=116.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|.+|+|||||++++..+.+. .+.||++.......                                       
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~---------------------------------------   41 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKT---------------------------------------   41 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEE---------------------------------------
Confidence            48999999999999999999988775 35666653332110                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            ..+.+....+.+||++|++++...+.      .+++.+|++++|+|++++.+|..+..|+.++.... ....| 
T Consensus        42 ------i~~~~~~~~l~iwDt~G~~~~~~~~~------~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~-~~~~p-  107 (182)
T cd04128          42 ------ISIRGTEITFSIWDLGGQREFINMLP------LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN-KTAIP-  107 (182)
T ss_pred             ------EEECCEEEEEEEEeCCCchhHHHhhH------HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCE-
Confidence                  01122345689999999998887776      66788999999999999999999988888775532 24566 


Q ss_pred             EEEEecCCCCCCCC-------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHGAAS-------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+..+..       .++..++.+..+                 .++++|||++|.|++++|+++.+.+
T Consensus       108 ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-----------------~~~~e~SAk~g~~v~~lf~~l~~~l  165 (182)
T cd04128         108 ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-----------------APLIFCSTSHSINVQKIFKIVLAKA  165 (182)
T ss_pred             EEEEEchhccccccchhhhhhHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            67899999964211       122233333322                 7899999999999999999998754

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.94  E-value=8.1e-26  Score=172.07  Aligned_cols=156  Identities=18%  Similarity=0.201  Sum_probs=116.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+|+|.+|+|||||+++++.+.+. .+.||++......                                        
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~----------------------------------------   41 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTAS----------------------------------------   41 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEE----------------------------------------
Confidence            58999999999999999999987765 4556654221100                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            ..+.+....+.+|||+|++.|...+.      .++..+|++++|||++++++|..+...+...+.. ...+.|+
T Consensus        42 ------~~~~~~~v~L~iwDt~G~e~~~~l~~------~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~-~~~~~pi  108 (222)
T cd04173          42 ------FEIDKRRIELNMWDTSGSSYYDNVRP------LAYPDSDAVLICFDISRPETLDSVLKKWQGETQE-FCPNAKV  108 (222)
T ss_pred             ------EEECCEEEEEEEEeCCCcHHHHHHhH------HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-hCCCCCE
Confidence                  11223345688999999999988877      6789999999999999999999985444443333 2367999


Q ss_pred             EEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc-hHHHHHHHh
Q psy871          181 LILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG-YGDGFRWLA  245 (249)
Q Consensus       181 ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~  245 (249)
                      ++|+||+|+..+              ...++..++.+.++                ..+|++|||+++.| ++++|....
T Consensus       109 iLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~----------------~~~y~E~SAk~~~~~V~~~F~~~~  172 (222)
T cd04173         109 VLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG----------------AVSYVECSSRSSERSVRDVFHVAT  172 (222)
T ss_pred             EEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC----------------CCEEEEcCCCcCCcCHHHHHHHHH
Confidence            999999999652              23344444444443                14899999999985 999999876


Q ss_pred             h
Q psy871          246 N  246 (249)
Q Consensus       246 ~  246 (249)
                      +
T Consensus       173 ~  173 (222)
T cd04173         173 V  173 (222)
T ss_pred             H
Confidence            5

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0079|consensus

Probab=99.94  E-value=1.7e-26  Score=157.01  Aligned_cols=155  Identities=25%  Similarity=0.312  Sum_probs=129.6

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      +.+|+|++|+|||+|+.++.+..++ .+..|++.+..+-.                                        
T Consensus        10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirT----------------------------------------   49 (198)
T KOG0079|consen   10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRT----------------------------------------   49 (198)
T ss_pred             HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEE----------------------------------------
Confidence            7889999999999999999998887 45566665544431                                        


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                           ..+++....+.+||++|+++|..+..      .+++..+++++|+|+++.++|.+...|++++...  ....|-+
T Consensus        50 -----v~i~G~~VkLqIwDtAGqErFrtits------tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~~v  116 (198)
T KOG0079|consen   50 -----VDINGDRVKLQIWDTAGQERFRTITS------TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN--CDSVPKV  116 (198)
T ss_pred             -----eecCCcEEEEEEeecccHHHHHHHHH------HHccCCceEEEEEECcchhhhHhHHHHHHHHHhc--Cccccce
Confidence                 11234556799999999999999988      8889999999999999999999999999999543  4689999


Q ss_pred             EEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          182 ILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       182 vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +|+||+|..+  .+..++.+++....+                 +.+|++|||..+|++..|.-|.+.
T Consensus       117 LVGNK~d~~~RrvV~t~dAr~~A~~mg-----------------ie~FETSaKe~~NvE~mF~cit~q  167 (198)
T KOG0079|consen  117 LVGNKNDDPERRVVDTEDARAFALQMG-----------------IELFETSAKENENVEAMFHCITKQ  167 (198)
T ss_pred             ecccCCCCccceeeehHHHHHHHHhcC-----------------chheehhhhhcccchHHHHHHHHH
Confidence            9999999977  355677888888776                 899999999999999999887764

>cd04116 Rab9 Rab9 subfamily

Probab=99.94  E-value=1.2e-25  Score=165.90  Aligned_cols=162  Identities=17%  Similarity=0.171  Sum_probs=121.3

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ...||+++|++|+|||||++++.++.+.. ..++.+......                                      
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------   45 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNK--------------------------------------   45 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEE--------------------------------------
Confidence            45799999999999999999998776552 233333211110                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC---C
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES---L  175 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~---~  175 (249)
                             ...+.+....+.+||+||++++...+.      .+++.+|++++|+|++++.++..+..|..++.....   .
T Consensus        46 -------~~~~~~~~~~l~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  112 (170)
T cd04116          46 -------DLEVDGHFVTLQIWDTAGQERFRSLRT------PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEP  112 (170)
T ss_pred             -------EEEECCeEEEEEEEeCCChHHHHHhHH------HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccC
Confidence                   001122345688999999998887777      667889999999999999999998878777654322   2


Q ss_pred             CCCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.|+++|+||+|+.. ....+++.++.+...                ..+++++||++|.|++++|+++.+.+
T Consensus       113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~v~~~~~~~~~~~  170 (170)
T cd04116         113 ESFPFVVLGNKNDIPERQVSTEEAQAWCRENG----------------DYPYFETSAKDATNVAAAFEEAVRRV  170 (170)
T ss_pred             CCCcEEEEEECccccccccCHHHHHHHHHHCC----------------CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999964 445667777666543                25799999999999999999998764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01861 Rab6 Rab6 subfamily

Probab=99.94  E-value=1.3e-25  Score=164.20  Aligned_cols=158  Identities=21%  Similarity=0.234  Sum_probs=117.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|||||||+++|++..+.. ..|+.+......                                        
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------   40 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSK----------------------------------------   40 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEE----------------------------------------
Confidence            489999999999999999998876652 223222211111                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           .....+....+.+||+||++.+.....      ..+..+|++++|+|++++.+|..+..++..+..... .+.|+
T Consensus        41 -----~~~~~~~~~~l~~~D~~G~~~~~~~~~------~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~i  108 (161)
T cd01861          41 -----TMYLEDKTVRLQLWDTAGQERFRSLIP------SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVII  108 (161)
T ss_pred             -----EEEECCEEEEEEEEECCCcHHHHHHHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEE
Confidence                 001122234688999999988877666      556889999999999999999998888887765432 36999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++++||+|+.+  ....++.....+...                 ++++++||+++.|++++++++.+.+
T Consensus       109 ilv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~i~~~l  161 (161)
T cd01861         109 VLVGNKTDLSDKRQVSTEEGEKKAKELN-----------------AMFIETSAKAGHNVKELFRKIASAL  161 (161)
T ss_pred             EEEEEChhccccCccCHHHHHHHHHHhC-----------------CEEEEEeCCCCCCHHHHHHHHHHhC
Confidence            99999999954  234455555555433                 7899999999999999999998764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0070|consensus

Probab=99.94  E-value=1.9e-26  Score=163.78  Aligned_cols=167  Identities=31%  Similarity=0.446  Sum_probs=149.8

Q ss_pred             cccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      ..++.++.+|+++|--+|||||+++.|..+++..+.||++..++.+.+                                
T Consensus        11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y--------------------------------   58 (181)
T KOG0070|consen   11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY--------------------------------   58 (181)
T ss_pred             hccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE--------------------------------
Confidence            456889999999999999999999999999999889999999999821                                


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                                       .+..+.+||..|++++...+.      .++...+++|+|+|+++.+.+...+..+..++....
T Consensus        59 -----------------kn~~f~vWDvGGq~k~R~lW~------~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~  115 (181)
T KOG0070|consen   59 -----------------KNISFTVWDVGGQEKLRPLWK------HYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE  115 (181)
T ss_pred             -----------------cceEEEEEecCCCcccccchh------hhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc
Confidence                             145688999999998888888      888999999999999999999999989999998877


Q ss_pred             CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ....|+++.+||.|+....+..++.+.+....            ...+.+.+..|+|.+|+|+.|.++||.+.+
T Consensus       116 l~~~~llv~aNKqD~~~als~~ei~~~L~l~~------------l~~~~w~iq~~~a~~G~GL~egl~wl~~~~  177 (181)
T KOG0070|consen  116 LRNAPLLVFANKQDLPGALSAAEITNKLGLHS------------LRSRNWHIQSTCAISGEGLYEGLDWLSNNL  177 (181)
T ss_pred             cCCceEEEEechhhccccCCHHHHHhHhhhhc------------cCCCCcEEeeccccccccHHHHHHHHHHHH
Confidence            78999999999999999999999998888765            455779999999999999999999998865

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.94  E-value=9.1e-26  Score=164.14  Aligned_cols=153  Identities=14%  Similarity=0.145  Sum_probs=111.6

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCC-CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPV-PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|+|||||+.++..+.+.... |+.+.....                                         
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~-----------------------------------------   39 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKE-----------------------------------------   39 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEE-----------------------------------------
Confidence            48999999999999999999877655322 211110000                                         


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            ..+.+....+.+||++|++..           .+++.+|++++|+|++++.+|+.+..|+.++.......+.|+
T Consensus        40 ------i~~~~~~~~l~i~D~~g~~~~-----------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~pi  102 (158)
T cd04103          40 ------VLVDGQSHLLLIRDEGGAPDA-----------QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPL  102 (158)
T ss_pred             ------EEECCEEEEEEEEECCCCCch-----------hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence                  111233456889999998642           234679999999999999999999888888876544467999


Q ss_pred             EEEEecCCCCC----CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+..    ....++..++.+...                .+++++|||++|.|++++|..+.+.+
T Consensus       103 ilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~SAk~~~~i~~~f~~~~~~~  158 (158)
T cd04103         103 ILVGTQDAISESNPRVIDDARARQLCADMK----------------RCSYYETCATYGLNVERVFQEAAQKI  158 (158)
T ss_pred             EEEeeHHHhhhcCCcccCHHHHHHHHHHhC----------------CCcEEEEecCCCCCHHHHHHHHHhhC
Confidence            99999999842    344455555544321                27899999999999999999998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04177 RSR1 RSR1 subgroup

Probab=99.94  E-value=1e-25  Score=166.01  Aligned_cols=160  Identities=17%  Similarity=0.213  Sum_probs=118.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ++||+++|++|||||||++++.++.+. .+.||.+.....                                        
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~----------------------------------------   40 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRK----------------------------------------   40 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEE----------------------------------------
Confidence            468999999999999999999877654 233333211100                                        


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+.+....+.+||+||++++...++      ..++.++++++|+|.+++.++.....+...+.......++|
T Consensus        41 ------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p  108 (168)
T cd04177          41 ------QVEIDGRQCDLEILDTAGTEQFTAMRE------LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP  108 (168)
T ss_pred             ------EEEECCEEEEEEEEeCCCcccchhhhH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC
Confidence                  001123345688999999999988877      56788999999999999999998887777776544446899


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++++||+|+..  ....++..+..+...                ..+++++||++|.|++++|+++..++
T Consensus       109 iiiv~nK~D~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~SA~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         109 MVLVGNKADLEDDRQVSREDGVSLSQQWG----------------NVPFYETSARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             EEEEEEChhccccCccCHHHHHHHHHHcC----------------CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            999999999965  233444444444322                26899999999999999999998754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.94  E-value=1.4e-25  Score=164.44  Aligned_cols=158  Identities=21%  Similarity=0.270  Sum_probs=118.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|||||||+++++..++.. ..++.......                                         
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----------------------------------------   39 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-----------------------------------------   39 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEE-----------------------------------------
Confidence            489999999999999999998766542 22222111000                                         


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           .....+....+.+||+||++.+...+.      ..++.++++++|+|.+++.++.....++..+.......++|+
T Consensus        40 -----~~~~~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi  108 (164)
T cd04139          40 -----KVVLDGEDVQLNILDTAGQEDYAAIRD------NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPL  108 (164)
T ss_pred             -----EEEECCEEEEEEEEECCChhhhhHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence                 011223345688999999988877766      566789999999999999999888888888776544468999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+..  ....++.....+...                 .+++++||++|.|++++++++.+++
T Consensus       109 iiv~NK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (164)
T cd04139         109 LLVGNKCDLEDKRQVSSEEAANLARQWG-----------------VPYVETSAKTRQNVEKAFYDLVREI  161 (164)
T ss_pred             EEEEEccccccccccCHHHHHHHHHHhC-----------------CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            99999999976  234455555555443                 6899999999999999999998765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04125 RabA_like RabA-like subfamily

Probab=99.94  E-value=1.8e-25  Score=167.66  Aligned_cols=158  Identities=20%  Similarity=0.230  Sum_probs=118.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||++++.+..+.. +.||.+......                                        
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~----------------------------------------   40 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIK----------------------------------------   40 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEE----------------------------------------
Confidence            489999999999999999999877653 444544222111                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ...+.+....+.+||++|.+.+...+.      ..++.+|++++|+|++++.+|..+..|+.++... .....|+
T Consensus        41 -----~~~~~~~~~~~~i~Dt~g~~~~~~~~~------~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~-~~~~~~~  108 (188)
T cd04125          41 -----TVYIENKIIKLQIWDTNGQERFRSLNN------SYYRGAHGYLLVYDVTDQESFENLKFWINEINRY-ARENVIK  108 (188)
T ss_pred             -----EEEECCEEEEEEEEECCCcHHHHhhHH------HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeE
Confidence                 011122235688999999988877766      6678899999999999999999988887777543 2246899


Q ss_pred             EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++++||+|+.+.  ...++...+.+...                 ++++++||++|.|++++|.+|.+.+
T Consensus       109 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~evSa~~~~~i~~~f~~l~~~~  161 (188)
T cd04125         109 VIVANKSDLVNNKVVDSNIAKSFCDSLN-----------------IPFFETSAKQSINVEEAFILLVKLI  161 (188)
T ss_pred             EEEEECCCCcccccCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999753  34455555554433                 6899999999999999999998754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03118 Rab family protein; Provisional

Probab=99.94  E-value=1.9e-25  Score=170.40  Aligned_cols=162  Identities=23%  Similarity=0.264  Sum_probs=118.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..++||+++|++|||||||+++|++..+....||.+......                                      
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~--------------------------------------   53 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIK--------------------------------------   53 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEE--------------------------------------
Confidence            346799999999999999999999876654444443222111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc-cCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD-ESLAS  177 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~  177 (249)
                             ...+.+....+.+||+||++++.....      .++..+|++++|+|.+++.+|..+...+...+.. .....
T Consensus        54 -------~~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~  120 (211)
T PLN03118         54 -------QLTVGGKRLKLTIWDTAGQERFRTLTS------SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD  120 (211)
T ss_pred             -------EEEECCEEEEEEEEECCCchhhHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence                   011122345688999999998887776      5678899999999999999999887655443332 22346


Q ss_pred             CcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+...  ...++.....+...                 ++++++||++|.|+++++++|.+.+
T Consensus       121 ~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~-----------------~~~~e~SAk~~~~v~~l~~~l~~~~  176 (211)
T PLN03118        121 CVKMLVGNKVDRESERDVSREEGMALAKEHG-----------------CLFLECSAKTRENVEQCFEELALKI  176 (211)
T ss_pred             CCEEEEEECccccccCccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            899999999999652  33455555554433                 6899999999999999999998754

>cd04142 RRP22 RRP22 subfamily

Probab=99.94  E-value=2.1e-25  Score=167.92  Aligned_cols=165  Identities=16%  Similarity=0.164  Sum_probs=113.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+|+|.+|||||||++++.++++. .+.||.+......                                        
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~----------------------------------------   40 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRP----------------------------------------   40 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCcccccccee----------------------------------------
Confidence            48999999999999999999987765 2344443221111                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhH--HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc--CCC
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESK--SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE--SLA  176 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~--~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~  176 (249)
                           ...+.+....+.+|||||...+....  +........+..+|++++|+|++++.+|..+..++..+....  ...
T Consensus        41 -----~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~  115 (198)
T cd04142          41 -----AVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK  115 (198)
T ss_pred             -----EEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCC
Confidence                 00112223467899999976543221  111112245688999999999999999999887777776532  236


Q ss_pred             CCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          177 SCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ++|+++|+||+|+...  ...++...+.+..                ..+++++|||++|.|++++|+.+.+.
T Consensus       116 ~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~e~Sak~g~~v~~lf~~i~~~  172 (198)
T cd04142         116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKS----------------WKCGYLECSAKYNWHILLLFKELLIS  172 (198)
T ss_pred             CCCEEEEEECccccccccccHHHHHHHHHHh----------------cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence            7999999999999552  2334444333221                12789999999999999999998864

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.94  E-value=9.2e-26  Score=169.55  Aligned_cols=151  Identities=17%  Similarity=0.208  Sum_probs=114.8

Q ss_pred             eccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceece
Q psy871           27 LGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVW  105 (249)
Q Consensus        27 vG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~  105 (249)
                      +|.+|||||||+++++.+.+. .+.||++.......                                            
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~--------------------------------------------   36 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--------------------------------------------   36 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEE--------------------------------------------
Confidence            699999999999999977665 34566553333221                                            


Q ss_pred             eccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEe
Q psy871          106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN  185 (249)
Q Consensus       106 ~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  185 (249)
                       ..+.+....+.+||++|++++...+.      .+++.+|++++|+|+++..+|..+..|+.++.+.  ..++|+++|+|
T Consensus        37 -~~~~~~~~~l~iwDt~G~e~~~~l~~------~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~--~~~~piilvgN  107 (200)
T smart00176       37 -FHTNRGPIRFNVWDTAGQEKFGGLRD------GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGN  107 (200)
T ss_pred             -EEECCEEEEEEEEECCCchhhhhhhH------HHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence             11123345789999999999988887      6788999999999999999999998888877653  25799999999


Q ss_pred             cCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          186 KIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       186 K~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+|+... ...+. ..+.+..                 .+++++|||++|.|++++|.+|.+.+
T Consensus       108 K~Dl~~~~v~~~~-~~~~~~~-----------------~~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176      108 KVDVKDRKVKAKS-ITFHRKK-----------------NLQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             CcccccccCCHHH-HHHHHHc-----------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9998653 22222 2333322                 27899999999999999999998754

Ran is involved in the active transport of proteins through nuclear pores.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.94  E-value=2.3e-25  Score=163.42  Aligned_cols=158  Identities=24%  Similarity=0.277  Sum_probs=118.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|||||||++++.+..+. ...++.+......                                        
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------   40 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTK----------------------------------------   40 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEE----------------------------------------
Confidence            48999999999999999999877654 2223333221111                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ...+.+....+.+||+||++.+.....      ..++.+|++++|+|++++.++..+..|+..+.... ..++|+
T Consensus        41 -----~~~~~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~-~~~~pi  108 (164)
T smart00175       41 -----TIEVDGKRVKLQIWDTAGQERFRSITS------SYYRGAVGALLVYDITNRESFENLKNWLKELREYA-DPNVVI  108 (164)
T ss_pred             -----EEEECCEEEEEEEEECCChHHHHHHHH------HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeE
Confidence                 001112234688999999988887666      55678999999999999999998887777765432 257999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++++||+|+..  +...+...++.+...                 ++++++||++|.|++++++++.+.+
T Consensus       109 vvv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~i~~l~~~i~~~~  161 (164)
T smart00175      109 MLVGNKSDLEDQRQVSREEAEAFAEEHG-----------------LPFFETSAKTNTNVEEAFEELAREI  161 (164)
T ss_pred             EEEEEchhcccccCCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999865  335566666655443                 6799999999999999999998864

Rab GTPases are implicated in vesicle trafficking.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.94  E-value=1.7e-25  Score=167.73  Aligned_cols=157  Identities=15%  Similarity=0.168  Sum_probs=114.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|+|||||+++|.++.+. ...||.+......                                        
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~----------------------------------------   40 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN----------------------------------------   40 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE----------------------------------------
Confidence            48999999999999999999987764 2233322111000                                        


Q ss_pred             ceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCC
Q psy871          101 TRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASC  178 (249)
Q Consensus       101 ~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~  178 (249)
                            .... +....+.+|||+|++++...+.      .++..+|++++|+|++++.+|..+.. |+..+...  ..+.
T Consensus        41 ------i~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~  106 (187)
T cd04132          41 ------IQGPNGKIIELALWDTAGQEEYDRLRP------LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGT  106 (187)
T ss_pred             ------EEecCCcEEEEEEEECCCchhHHHHHH------HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCC
Confidence                  0001 2234588999999998887766      56788999999999999999988754 55544322  2579


Q ss_pred             cEEEEEecCCCCCC------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGA------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+...      ...++..++.....                ..++++|||++|.|++++|..+.+.+
T Consensus       107 piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~v~~~f~~l~~~~  166 (187)
T cd04132         107 PIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG----------------AFAYLECSAKTMENVEEVFDTAIEEA  166 (187)
T ss_pred             CEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC----------------CcEEEEccCCCCCCHHHHHHHHHHHH
Confidence            99999999999653      23556666665544                12899999999999999999998754

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=2e-25  Score=163.45  Aligned_cols=157  Identities=24%  Similarity=0.303  Sum_probs=127.3

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ||+++|++++|||||+++|.+..+. .+.||.+.......                                        
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~----------------------------------------   40 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKE----------------------------------------   40 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEE----------------------------------------
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccc----------------------------------------
Confidence            7999999999999999999988765 44455543322221                                        


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                           ..+++....+.+||++|++++.....      ..+..+|++++|+|.+++.+|..+..|+..+..... ...|++
T Consensus        41 -----~~~~~~~~~l~i~D~~g~~~~~~~~~------~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~ii  108 (162)
T PF00071_consen   41 -----VSIDGKPVNLEIWDTSGQERFDSLRD------IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPII  108 (162)
T ss_dssp             -----EEETTEEEEEEEEEETTSGGGHHHHH------HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEE
T ss_pred             -----cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc-ccccce
Confidence                 11224456799999999998887776      567889999999999999999999988888765432 469999


Q ss_pred             EEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          182 ILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       182 vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++||+|+.+  ....++..++.+..+                 .++++|||+++.|+.++|..+.+.+
T Consensus       109 vvg~K~D~~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  109 VVGNKSDLSDEREVSVEEAQEFAKELG-----------------VPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             EEEETTTGGGGSSSCHHHHHHHHHHTT-----------------SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             eeeccccccccccchhhHHHHHHHHhC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            9999999976  677788888888766                 8999999999999999999998876

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.94  E-value=2.6e-25  Score=172.41  Aligned_cols=159  Identities=21%  Similarity=0.271  Sum_probs=118.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|.+|+|||||++++..+++. .+.||++......                                        
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~----------------------------------------   40 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKL----------------------------------------   40 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEE----------------------------------------
Confidence            48999999999999999999887765 3344443110000                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-------
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE-------  173 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-------  173 (249)
                            ..+.+....+.+|||+|.+.+...+.      .++..+|++++|||+++.++|..+..++.++....       
T Consensus        41 ------~~i~~~~~~l~I~Dt~G~~~~~~~~~------~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~  108 (247)
T cd04143          41 ------YSIRGEVYQLDILDTSGNHPFPAMRR------LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKT  108 (247)
T ss_pred             ------EEECCEEEEEEEEECCCChhhhHHHH------HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhccccccc
Confidence                  01123345688999999988877665      45678999999999999999999888877775431       


Q ss_pred             -CCCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 -SLASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 -~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ...++|+++|+||+|+..  ....+++.+.+...                ..++++++||++|.|++++|++|.+..
T Consensus       109 ~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----------------~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         109 KENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----------------ENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             ccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----------------CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence             235799999999999964  45566666655432                126899999999999999999998753

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.94  E-value=3.5e-25  Score=162.29  Aligned_cols=155  Identities=32%  Similarity=0.381  Sum_probs=115.8

Q ss_pred             EEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           24 LLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      |+++|++|||||||++++.+..+. ...||.+....                                            
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~--------------------------------------------   37 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV--------------------------------------------   37 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceE--------------------------------------------
Confidence            799999999999999999876543 33444432110                                            


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                           .+...+..+.+||++|++.+...+.      .+++.+|++++|+|++++.++.....++.++....  .++|+++
T Consensus        38 -----~i~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piil  104 (164)
T cd04162          38 -----AIPTQDAIMELLEIGGSQNLRKYWK------RYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVV  104 (164)
T ss_pred             -----EEeeCCeEEEEEECCCCcchhHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEE
Confidence                 0122345689999999998887777      67889999999999999999988888888876432  6899999


Q ss_pred             EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecc------ccchHHHHHHHhh
Q psy871          183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLM------RQGYGDGFRWLAN  246 (249)
Q Consensus       183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------g~gv~~l~~~l~~  246 (249)
                      |+||+|+......+++.+.+.....           .....++++++||++      ++|++++|+.|..
T Consensus       105 v~NK~Dl~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         105 LANKQDLPAARSVQEIHKELELEPI-----------ARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             EEeCcCCcCCCCHHHHHHHhCChhh-----------cCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            9999999876556655544432220           011347889999988      9999999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04118 Rab24 Rab24 subfamily

Probab=99.94  E-value=3.5e-25  Score=166.76  Aligned_cols=157  Identities=19%  Similarity=0.185  Sum_probs=115.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC--CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ--PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .||+++|++|+|||||+++++++.+..  +.||++......                                       
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~---------------------------------------   41 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAK---------------------------------------   41 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEE---------------------------------------
Confidence            489999999999999999999877653  444443221111                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+.+....+.+||++|++++.....      ..+..+|++++|+|++++.++..+..|+..+...  ..+.|
T Consensus        42 ------~~~~~~~~~~l~i~D~~G~~~~~~~~~------~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p  107 (193)
T cd04118          42 ------RMVVGERVVTLGIWDTAGSERYEAMSR------IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL--EEHCK  107 (193)
T ss_pred             ------EEEECCEEEEEEEEECCCchhhhhhhH------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--CCCCC
Confidence                  001122334578999999988877766      5567899999999999999998887777776542  24799


Q ss_pred             EEEEEecCCCCCC------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGA------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+...      ...+++.++.+...                 .+++++||++|.|++++++++.+.+
T Consensus       108 iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~i~~~~  165 (193)
T cd04118         108 IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-----------------AQHFETSSKTGQNVDELFQKVAEDF  165 (193)
T ss_pred             EEEEEEcccccccccccCccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999998642      12334444444433                 6799999999999999999998753

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.94  E-value=5.9e-25  Score=161.28  Aligned_cols=158  Identities=18%  Similarity=0.243  Sum_probs=114.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC--CCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD--RLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~--~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .||+++|++|||||||+++|...  .+. .+.||.+.......                                     
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~-------------------------------------   43 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKE-------------------------------------   43 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEE-------------------------------------
Confidence            48999999999999999999854  232 33444443321110                                     


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                            ... -......+.+||++|++.+....+      ..+..+|++++|+|.+++.++..+..|+..+....  .+.
T Consensus        44 ------~~~-~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~  108 (164)
T cd04101          44 ------VPV-DTDNTVELFIFDSAGQELYSDMVS------NYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHM  108 (164)
T ss_pred             ------EEe-CCCCEEEEEEEECCCHHHHHHHHH------HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCC
Confidence                  000 012235688999999988877666      55688999999999999999988887877765432  569


Q ss_pred             cEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.+.  ....+...+.....                 .+++++||++|.|++++++.|.+.+
T Consensus       109 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         109 PGVLVGNKMDLADKAEVTDAQAQAFAQANQ-----------------LKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             CEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCChHHHHHHHHHHh
Confidence            99999999999653  23333333333322                 6799999999999999999998875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03108 Rab family protein; Provisional

Probab=99.94  E-value=4.7e-25  Score=167.83  Aligned_cols=159  Identities=23%  Similarity=0.216  Sum_probs=120.7

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .+||+|+|++|+|||||+++|+..++.. ..||++......                                       
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~---------------------------------------   46 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR---------------------------------------   46 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEE---------------------------------------
Confidence            4799999999999999999999877653 334443222111                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ...+.+....+.+||++|++.+...+.      .++..+|++++|+|++++.++..+..|+..+... .....|
T Consensus        47 ------~i~~~~~~i~l~l~Dt~G~~~~~~~~~------~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~-~~~~~p  113 (210)
T PLN03108         47 ------MITIDNKPIKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLASWLEDARQH-ANANMT  113 (210)
T ss_pred             ------EEEECCEEEEEEEEeCCCcHHHHHHHH------HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHh-cCCCCc
Confidence                  001122234588999999988877666      5667899999999999999999888777766433 235799


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++++||+|+.+  ....++..++++...                 ++++++||+++.|++++|+++.+.+
T Consensus       114 iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        114 IMLIGNKCDLAHRRAVSTEEGEQFAKEHG-----------------LIFMEASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             EEEEEECccCccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999965  345667777776554                 7899999999999999999998754

>cd04135 Tc10 TC10 subfamily

Probab=99.94  E-value=2.9e-25  Score=164.48  Aligned_cols=158  Identities=20%  Similarity=0.246  Sum_probs=112.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|+|||||++++..+.+. ...||........                                        
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~----------------------------------------   40 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS----------------------------------------   40 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEE----------------------------------------
Confidence            48999999999999999999987765 2333332110000                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            ..+.+....+.+||++|++.+...+.      ..+..+|++++|+|.+++.+|..+...+.+.+... ..+.|+
T Consensus        41 ------~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~pi  107 (174)
T cd04135          41 ------VTVGGKQYLLGLYDTAGQEDYDRLRP------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPY  107 (174)
T ss_pred             ------EEECCEEEEEEEEeCCCccccccccc------ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCE
Confidence                  01122234578999999998877776      56788999999999999999988864443333332 468999


Q ss_pred             EEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          181 LILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       181 ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ++++||+|+.++              ...++...+.+..+                ..++++|||++|.|++++|+.+.+
T Consensus       108 ivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~gi~~~f~~~~~  171 (174)
T cd04135         108 LLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG----------------AHCYVECSALTQKGLKTVFDEAIL  171 (174)
T ss_pred             EEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC----------------CCEEEEecCCcCCCHHHHHHHHHH
Confidence            999999998653              22233333433332                247999999999999999999987


Q ss_pred             hc
Q psy871          247 YI  248 (249)
Q Consensus       247 ~i  248 (249)
                      .+
T Consensus       172 ~~  173 (174)
T cd04135         172 AI  173 (174)
T ss_pred             Hh
Confidence            64

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN03110 Rab GTPase; Provisional

Probab=99.94  E-value=4.3e-25  Score=168.70  Aligned_cols=160  Identities=18%  Similarity=0.206  Sum_probs=120.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..+||+++|++|+|||||+++|.+..+. ...||++.......                                     
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~-------------------------------------   53 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRT-------------------------------------   53 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEE-------------------------------------
Confidence            3579999999999999999999887765 33444443222110                                     


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                              ..+.+....+.+||++|++++.....      .+++.++++++|+|++++.+|..+..|+..+... ...+.
T Consensus        54 --------v~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~  118 (216)
T PLN03110         54 --------LQVEGKTVKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH-ADSNI  118 (216)
T ss_pred             --------EEECCEEEEEEEEECCCcHHHHHHHH------HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHh-CCCCC
Confidence                    01122234688999999998887776      6678899999999999999999988787776443 23579


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+..  ....++...+.....                 ++++++||++|.|++++|++|.+.+
T Consensus       119 piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~-----------------~~~~e~SA~~g~~v~~lf~~l~~~i  173 (216)
T PLN03110        119 VIMMAGNKSDLNHLRSVAEEDGQALAEKEG-----------------LSFLETSALEATNVEKAFQTILLEI  173 (216)
T ss_pred             eEEEEEEChhcccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999865  233445554444333                 7899999999999999999998754

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.94  E-value=2.4e-25  Score=164.93  Aligned_cols=155  Identities=18%  Similarity=0.228  Sum_probs=111.1

Q ss_pred             EEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           24 LLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      |+|+|++|+|||||++++.++.+.. +.|+......                                            
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~--------------------------------------------   36 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS--------------------------------------------   36 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee--------------------------------------------
Confidence            5899999999999999998876642 2222211000                                            


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCcEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCPVL  181 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~i  181 (249)
                        ....+.+....+.+|||+|++.+...+.      ..+..+|++++|+|.+++.+|..+.. |+..+...  ..+.|++
T Consensus        37 --~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~pii  106 (174)
T smart00174       37 --ADVEVDGKPVELGLWDTAGQEDYDRLRP------LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPII  106 (174)
T ss_pred             --EEEEECCEEEEEEEEECCCCcccchhch------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEE
Confidence              0011123345689999999998877766      56788999999999999999998754 55555432  2589999


Q ss_pred             EEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          182 ILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       182 vv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +|+||+|+...              ...++..++.+..+                ..++++|||++|.|++++|+.+.+.
T Consensus       107 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~v~~lf~~l~~~  170 (174)
T smart00174      107 LVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG----------------AVKYLECSALTQEGVREVFEEAIRA  170 (174)
T ss_pred             EEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC----------------CcEEEEecCCCCCCHHHHHHHHHHH
Confidence            99999999652              22333344444333                1479999999999999999999875


Q ss_pred             c
Q psy871          248 I  248 (249)
Q Consensus       248 i  248 (249)
                      +
T Consensus       171 ~  171 (174)
T smart00174      171 A  171 (174)
T ss_pred             h
Confidence            3

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01862 Rab7 Rab7 subfamily

Probab=99.94  E-value=7.1e-25  Score=162.07  Aligned_cols=159  Identities=23%  Similarity=0.244  Sum_probs=115.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|||||||++++.+..+.. ..+|.+......                                        
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~----------------------------------------   40 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK----------------------------------------   40 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEE----------------------------------------
Confidence            489999999999999999998876542 222322111100                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC---CCC
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES---LAS  177 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~  177 (249)
                           ...+.+....+.+||+||++.+.....      ..++.+|++++|+|++++.++.....|...++....   ..+
T Consensus        41 -----~~~~~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (172)
T cd01862          41 -----EVTVDDKLVTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPEN  109 (172)
T ss_pred             -----EEEECCEEEEEEEEeCCChHHHHhHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCC
Confidence                 001122234578999999988877666      567889999999999999998887766666554322   237


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +|+++|+||+|+..  ....++..++.+...                ..+++++||++|.|++++++++.+.
T Consensus       110 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gv~~l~~~i~~~  165 (172)
T cd01862         110 FPFVVLGNKIDLEEKRQVSTKKAQQWCQSNG----------------NIPYFETSAKEAINVEQAFETIARK  165 (172)
T ss_pred             ceEEEEEECcccccccccCHHHHHHHHHHcC----------------CceEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999973  445666666665432                2689999999999999999998864

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=8.6e-25  Score=159.24  Aligned_cols=156  Identities=28%  Similarity=0.433  Sum_probs=115.0

Q ss_pred             EEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           24 LLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      |+++|++|||||||+++|.+.++. ...||.+.....+                                          
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~------------------------------------------   39 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKV------------------------------------------   39 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEE------------------------------------------
Confidence            799999999999999999887654 2333333221111                                          


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                             ......+.+||+||++.+...+.      .++..+|++++|+|++++.++.....++..+.......++|+++
T Consensus        40 -------~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii  106 (159)
T cd04159          40 -------TKGNVTLKVWDLGGQPRFRSMWE------RYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLV  106 (159)
T ss_pred             -------EECCEEEEEEECCCCHhHHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEE
Confidence                   11124688999999988877666      56788999999999999988888777788776655556899999


Q ss_pred             EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      |+||+|+.+....+++........            .....++++++||++|.|+++++++|.+
T Consensus       107 v~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         107 LGNKNDLPGALSVDELIEQMNLKS------------ITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             EEeCccccCCcCHHHHHHHhCccc------------ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            999999977544444443332211            1123478999999999999999999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04123 Rab21 Rab21 subfamily

Probab=99.94  E-value=7.5e-25  Score=160.24  Aligned_cols=158  Identities=22%  Similarity=0.252  Sum_probs=115.6

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|+|||||+++|.+..+.. ..++........                                        
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------   40 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQK----------------------------------------   40 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEE----------------------------------------
Confidence            489999999999999999999876542 111211111000                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                         .  ..+.+....+.+||++|++.+.....      ..++.+|++++|+|+++++++..+..++.++..... .++|+
T Consensus        41 ---~--~~~~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi  108 (162)
T cd04123          41 ---T--VNIGGKRIDLAIWDTAGQERYHALGP------IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISL  108 (162)
T ss_pred             ---E--EEECCEEEEEEEEECCchHHHHHhhH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeE
Confidence               0  00112234688999999988877666      456789999999999999999888877777654322 37999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++++||+|+..  +...+++.+..+...                 .+++++||+++.|++++++++.+.+
T Consensus       109 iiv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         109 VIVGNKIDLERQRVVSKSEAEEYAKSVG-----------------AKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             EEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999975  334556666555444                 6789999999999999999998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.94  E-value=4.7e-25  Score=164.25  Aligned_cols=158  Identities=20%  Similarity=0.289  Sum_probs=118.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|+|||||++++++..+.. ..||........                                        
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~----------------------------------------   41 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKI----------------------------------------   41 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEE----------------------------------------
Confidence            589999999999999999998766542 333332110000                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            ..+...+..+.+||+||++++.....      ..+..++++++|+|+++..++..+..++..+++.....+.|+
T Consensus        42 ------~~~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  109 (180)
T cd04137          42 ------IRYKGQDYHLEIVDTAGQDEYSILPQ------KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI  109 (180)
T ss_pred             ------EEECCEEEEEEEEECCChHhhHHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence                  01122345688999999988877666      566789999999999999999999888888877655567899


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++++||+|+..  ....++.....+...                 .+++++||+++.|+++++.++.+.+
T Consensus       110 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~l~~~~  162 (180)
T cd04137         110 VLVGNKSDLHTQRQVSTEEGKELAESWG-----------------AAFLESSARENENVEEAFELLIEEI  162 (180)
T ss_pred             EEEEEchhhhhcCccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999864  233344444444333                 6899999999999999999998765

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0087|consensus

Probab=99.93  E-value=1.4e-25  Score=162.09  Aligned_cols=159  Identities=19%  Similarity=0.236  Sum_probs=133.2

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      -.||+++|.+++|||-|+.|++.+++. ...+|++....+..                                      
T Consensus        14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t--------------------------------------   55 (222)
T KOG0087|consen   14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRT--------------------------------------   55 (222)
T ss_pred             EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeec--------------------------------------
Confidence            458999999999999999999999988 56677775554441                                      


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             ..+++......+|||+|+++|+++..      .+|+.+.+.++|+|++...+|+.+..|+.++. .....+++
T Consensus        56 -------~~vd~k~vkaqIWDTAGQERyrAitS------aYYrgAvGAllVYDITr~~Tfenv~rWL~ELR-dhad~niv  121 (222)
T KOG0087|consen   56 -------VNVDGKTVKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDITRRQTFENVERWLKELR-DHADSNIV  121 (222)
T ss_pred             -------eeecCcEEEEeeecccchhhhccccc------hhhcccceeEEEEechhHHHHHHHHHHHHHHH-hcCCCCeE
Confidence                   12334455688999999999999888      89999999999999999999999999999986 44557999


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+||..  .+..++...+.+.-.                 ..++++||..+.|+++.|..+...|
T Consensus       122 imLvGNK~DL~~lraV~te~~k~~Ae~~~-----------------l~f~EtSAl~~tNVe~aF~~~l~~I  175 (222)
T KOG0087|consen  122 IMLVGNKSDLNHLRAVPTEDGKAFAEKEG-----------------LFFLETSALDATNVEKAFERVLTEI  175 (222)
T ss_pred             EEEeecchhhhhccccchhhhHhHHHhcC-----------------ceEEEecccccccHHHHHHHHHHHH
Confidence            999999999966  566777877777655                 8899999999999999998877643

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.93  E-value=4.1e-25  Score=162.30  Aligned_cols=157  Identities=22%  Similarity=0.263  Sum_probs=111.1

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ||+++|++|+|||||++++....+. .+.||......                                           
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~-------------------------------------------   37 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS-------------------------------------------   37 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce-------------------------------------------
Confidence            6899999999999999999865543 22233210000                                           


Q ss_pred             eeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC-CCCCc
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES-LASCP  179 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p  179 (249)
                         ....+.+....+.+||+||++.+ .....      ..++.+|++++|+|++++.+|..+..|+..+..... ..++|
T Consensus        38 ---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p  108 (165)
T cd04146          38 ---RQVTIDGEQVSLEILDTAGQQQADTEQLE------RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP  108 (165)
T ss_pred             ---EEEEECCEEEEEEEEECCCCcccccchHH------HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence               00111233456889999998752 22233      456789999999999999999988877666544321 35799


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc-chHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ-GYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+..  ....++..++.+...                 .+++++||++|. |++++|+.+.+.+
T Consensus       109 iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         109 VILVGNKADLLHYRQVSTEEGEKLASELG-----------------CLFFEVSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             EEEEEECCchHHhCccCHHHHHHHHHHcC-----------------CEEEEeCCCCCchhHHHHHHHHHHHH
Confidence            999999999854  334555566655544                 689999999995 9999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.93  E-value=6.5e-25  Score=164.65  Aligned_cols=111  Identities=17%  Similarity=0.141  Sum_probs=87.5

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCcEEEEEecCC
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCPVLILGNKID  188 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D  188 (249)
                      .+....+.+|||+|++..  .+.      .++..+|++++|+|++++.+|..+.. |+..+...  ..+.|+++|+||+|
T Consensus        62 ~~~~v~l~iwDTaG~~~~--~~~------~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~D  131 (195)
T cd01873          62 DGVSVSLRLWDTFGDHDK--DRR------FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLD  131 (195)
T ss_pred             CCEEEEEEEEeCCCChhh--hhc------ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchh
Confidence            344567999999998742  233      46789999999999999999998864 66655432  25789999999999


Q ss_pred             CCC---------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          189 KHG---------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       189 l~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +.+                     .+..++..++.+..+                 +++++|||++|.|++++|+.+.+.
T Consensus       132 L~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-----------------~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         132 LRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG-----------------IPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             ccccccchhhhcccccccccccCCccCHHHHHHHHHHhC-----------------CEEEEcCCCCCCCHHHHHHHHHHh
Confidence            853                     345667777777665                 789999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04148 RGK RGK subfamily

Probab=99.93  E-value=1e-24  Score=167.09  Aligned_cols=157  Identities=15%  Similarity=0.178  Sum_probs=111.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +||+++|++|+|||||+++++.+.+.  .+.|+.+......                                       
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~---------------------------------------   41 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYER---------------------------------------   41 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEE---------------------------------------
Confidence            48999999999999999999876653  2333332111110                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhcccc-ccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES-LASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~-~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                            ...+.+.+..+.+||++|++.  ....      ..+. .+|++++|+|++++.+|..+..++..+.......++
T Consensus        42 ------~i~~~~~~~~l~i~Dt~G~~~--~~~~------~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~  107 (221)
T cd04148          42 ------TVSVDGEESTLVVIDHWEQEM--WTED------SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDR  107 (221)
T ss_pred             ------EEEECCEEEEEEEEeCCCcch--HHHh------HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence                  011122345688999999872  1222      2234 899999999999999999888787777654334679


Q ss_pred             cEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.+.  ...++..++.....                 .+++++||++|.|++++++++.+.+
T Consensus       108 piilV~NK~Dl~~~~~v~~~~~~~~a~~~~-----------------~~~~e~SA~~~~gv~~l~~~l~~~~  162 (221)
T cd04148         108 PIILVGNKSDLARSREVSVQEGRACAVVFD-----------------CKFIETSAGLQHNVDELLEGIVRQI  162 (221)
T ss_pred             CEEEEEEChhccccceecHHHHHHHHHHcC-----------------CeEEEecCCCCCCHHHHHHHHHHHH
Confidence            99999999999653  33444444444333                 6899999999999999999998765

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01893 Miro1 Miro1 subfamily

Probab=99.93  E-value=1.7e-24  Score=159.11  Aligned_cols=158  Identities=18%  Similarity=0.287  Sum_probs=107.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      .||+++|.+|||||||+++|..+.+....|+..... .+                                         
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~-----------------------------------------   38 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TI-----------------------------------------   38 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-Ee-----------------------------------------
Confidence            389999999999999999998876643222211000 00                                         


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                          ...+......+.+||+||.+.+.....      ..+..+|++++|+|++++.++..+...+...++... .+.|++
T Consensus        39 ----~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pvi  107 (166)
T cd01893          39 ----PADVTPERVPTTIVDTSSRPQDRANLA------AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPII  107 (166)
T ss_pred             ----eeeecCCeEEEEEEeCCCchhhhHHHh------hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEE
Confidence                011123345789999999876655444      445789999999999999999987544433333322 479999


Q ss_pred             EEEecCCCCCCCCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          182 ILGNKIDKHGAASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       182 vv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +|+||+|+.+....    +++........               ...++++|||++|.|++++|+.+.+.
T Consensus       108 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~e~Sa~~~~~v~~lf~~~~~~  162 (166)
T cd01893         108 LVGNKSDLRDGSSQAGLEEEMLPIMNEFR---------------EIETCVECSAKTLINVSEVFYYAQKA  162 (166)
T ss_pred             EEEEchhcccccchhHHHHHHHHHHHHHh---------------cccEEEEeccccccCHHHHHHHHHHH
Confidence            99999999764332    22222222221               11379999999999999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0091|consensus

Probab=99.93  E-value=1.7e-24  Score=149.74  Aligned_cols=165  Identities=21%  Similarity=0.286  Sum_probs=132.6

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      ++.=+.++.|+|++-+|||+||+.++.+.+. ...||++                        -.-+. +++        
T Consensus         4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvg------------------------vdffa-rli--------   50 (213)
T KOG0091|consen    4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVG------------------------VDFFA-RLI--------   50 (213)
T ss_pred             ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccc------------------------hHHHH-HHH--------
Confidence            3445779999999999999999999877765 3344443                        22222 121        


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                 ..-++....+.+|||+|+++|.++..      ++|..+-.+++|+|.++..+|+++..|+++.......
T Consensus        51 -----------e~~pg~riklqlwdtagqerfrsitk------syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~  113 (213)
T KOG0091|consen   51 -----------ELRPGYRIKLQLWDTAGQERFRSITK------SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQG  113 (213)
T ss_pred             -----------hcCCCcEEEEEEeeccchHHHHHHHH------HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCC
Confidence                       11133445789999999999999999      8999999999999999999999999999988765543


Q ss_pred             C-CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 A-SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~-~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      + ++-+.+|+.|+||..  +++.++.+.+.+..+                 ..++++||++|.|+++.|..|.+.|
T Consensus       114 P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg-----------------M~FVETSak~g~NVeEAF~mlaqeI  172 (213)
T KOG0091|consen  114 PDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG-----------------MAFVETSAKNGCNVEEAFDMLAQEI  172 (213)
T ss_pred             CCeeEEEEeccccchhhhccccHHHHHHHHHhcC-----------------ceEEEecccCCCcHHHHHHHHHHHH
Confidence            3 455679999999966  788899999999887                 8999999999999999999988754

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.93  E-value=1.4e-24  Score=174.88  Aligned_cols=165  Identities=18%  Similarity=0.170  Sum_probs=128.9

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHH-----Hhhhhcc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE-----LQCLLTD  140 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~-----~~~~~~~  140 (249)
                      .-++.++|.|++|||+++|++.+.+.....+..+.+++.....++..+..+.++||+|..+-....+.     ....+..
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a  257 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA  257 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence            36899999999999999999999999988999999999999988888888999999995543333321     1234456


Q ss_pred             ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCC
Q psy871          141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSE  218 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                      +..++++++|+|++.+.+-++.  .+..+..+   .+.++++|+||+|+.+.  ...++....++...            
T Consensus       258 I~~a~vvllviDa~~~~~~qD~--~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l------------  320 (444)
T COG1160         258 IERADVVLLVIDATEGISEQDL--RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKL------------  320 (444)
T ss_pred             HhhcCEEEEEEECCCCchHHHH--HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHh------------
Confidence            7889999999999998776665  34444444   78999999999999875  44555554454432            


Q ss_pred             CCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          219 MSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       219 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ......+++++||++|.|++++++.+.+.
T Consensus       321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~  349 (444)
T COG1160         321 PFLDFAPIVFISALTGQGLDKLFEAIKEI  349 (444)
T ss_pred             ccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence            23355899999999999999999988653

>cd01892 Miro2 Miro2 subfamily

Probab=99.93  E-value=8.7e-25  Score=160.97  Aligned_cols=160  Identities=16%  Similarity=0.166  Sum_probs=114.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .+.+||+++|.+|+|||||++++.++.+.  .+.||.+.......                                   
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~-----------------------------------   46 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNT-----------------------------------   46 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEE-----------------------------------
Confidence            35679999999999999999999988764  44555543322110                                   


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                                ..+.+....+.+||++|.+.+.....      .++..+|++++|+|++++.++..+..++..+..   ..
T Consensus        47 ----------~~~~~~~~~l~~~d~~g~~~~~~~~~------~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~  107 (169)
T cd01892          47 ----------VEVYGQEKYLILREVGEDEVAILLND------AELAACDVACLVYDSSDPKSFSYCAEVYKKYFM---LG  107 (169)
T ss_pred             ----------EEECCeEEEEEEEecCCcccccccch------hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CC
Confidence                      01122234678999999988776666      567899999999999999999887666665422   24


Q ss_pred             CCcEEEEEecCCCCCCC--CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAA--SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+++|+||+|+.+..  ...+..++.+...                ...++++||++|.|++++++.|.+.+
T Consensus       108 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~~v~~lf~~l~~~~  165 (169)
T cd01892         108 EIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG----------------LPPPLHFSSKLGDSSNELFTKLATAA  165 (169)
T ss_pred             CCeEEEEEEcccccccccccccCHHHHHHHcC----------------CCCCEEEEeccCccHHHHHHHHHHHh
Confidence            79999999999996532  1222333333332                12468999999999999999998754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=99.93  E-value=3.5e-24  Score=155.95  Aligned_cols=156  Identities=24%  Similarity=0.296  Sum_probs=118.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCC-CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||++++.+..+... .+|.+.......                                       
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~---------------------------------------   41 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKT---------------------------------------   41 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEE---------------------------------------
Confidence            4899999999999999999998776643 444443322221                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            .........+.+||+||+..+.....      ..++.+|++++|+|++++.++..+..++..+... .....|+
T Consensus        42 ------~~~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~  108 (159)
T cd00154          42 ------IEIDGKTVKLQIWDTAGQERFRSITP------SYYRGAHGAILVYDITNRESFENLDKWLKELKEY-APENIPI  108 (159)
T ss_pred             ------EEECCEEEEEEEEecCChHHHHHHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcE
Confidence                  01112335688999999987777665      5567899999999999999998888777776543 2256999


Q ss_pred             EEEEecCCCC--CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          181 LILGNKIDKH--GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       181 ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ++++||+|+.  .....+++.++.....                 .+++++||+++.|+++++.+|.+
T Consensus       109 ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154         109 ILVGNKIDLEDQRQVSTEEAQQFAKENG-----------------LLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             EEEEEcccccccccccHHHHHHHHHHcC-----------------CeEEEEecCCCCCHHHHHHHHhC
Confidence            9999999995  3556667766666544                 78999999999999999999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>KOG0093|consensus

Probab=99.93  E-value=6.7e-25  Score=149.05  Aligned_cols=156  Identities=24%  Similarity=0.308  Sum_probs=125.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      |++++|.+.+|||||+.+.++..+.. ...|.+......                                         
T Consensus        23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvK-----------------------------------------   61 (193)
T KOG0093|consen   23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK-----------------------------------------   61 (193)
T ss_pred             eEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEe-----------------------------------------
Confidence            99999999999999999999887763 223333221111                                         


Q ss_pred             eeceeccccc-cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          102 RRVWKDYFPA-VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       102 ~~~~~~~~~~-~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ..+++ ....+.+|||.|++++..+..      .++++++++++++|+++.++|..++.|...+.. ..-.+.|+
T Consensus        62 -----Tvyr~~kRiklQiwDTagqEryrtiTT------ayyRgamgfiLmyDitNeeSf~svqdw~tqIkt-ysw~naqv  129 (193)
T KOG0093|consen   62 -----TVYRSDKRIKLQIWDTAGQERYRTITT------AYYRGAMGFILMYDITNEESFNSVQDWITQIKT-YSWDNAQV  129 (193)
T ss_pred             -----EeeecccEEEEEEEecccchhhhHHHH------HHhhccceEEEEEecCCHHHHHHHHHHHHHhee-eeccCceE
Confidence                 11222 235689999999999988888      788999999999999999999999988887743 24468999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||||+.+  ..+.+..+.+.+.++                 ..+|++|||.+.|++++|+.|...|
T Consensus       130 ilvgnKCDmd~eRvis~e~g~~l~~~LG-----------------fefFEtSaK~NinVk~~Fe~lv~~I  182 (193)
T KOG0093|consen  130 ILVGNKCDMDSERVISHERGRQLADQLG-----------------FEFFETSAKENINVKQVFERLVDII  182 (193)
T ss_pred             EEEecccCCccceeeeHHHHHHHHHHhC-----------------hHHhhhcccccccHHHHHHHHHHHH
Confidence            99999999976  355678888888887                 7899999999999999999998765

>cd00876 Ras Ras family

Probab=99.93  E-value=2.8e-24  Score=156.87  Aligned_cols=157  Identities=20%  Similarity=0.270  Sum_probs=117.2

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ||+++|++|||||||++++++..+. ...|+..   ...                                         
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~---~~~-----------------------------------------   36 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE---DSY-----------------------------------------   36 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh---HeE-----------------------------------------
Confidence            6899999999999999999876543 2222221   000                                         


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                        .....+......+.+||+||++.+.....      ..++.+|++++|+|.+++.++..+..++..+.........|++
T Consensus        37 --~~~~~~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i  108 (160)
T cd00876          37 --RKTIVVDGETYTLDILDTAGQEEFSAMRD------LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIV  108 (160)
T ss_pred             --EEEEEECCEEEEEEEEECCChHHHHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence              00011122245688999999988777666      5567899999999999999999888788777665444689999


Q ss_pred             EEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          182 ILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       182 vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++||+|+..  ....+++.+..+...                 .+++++||+++.|+++++++|.+++
T Consensus       109 vv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S~~~~~~i~~l~~~l~~~i  160 (160)
T cd00876         109 LVGNKCDLENERQVSKEEGKALAKEWG-----------------CPFIETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             EEEECCcccccceecHHHHHHHHHHcC-----------------CcEEEeccCCCCCHHHHHHHHHhhC
Confidence            9999999975  334556666666544                 6899999999999999999998864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00157 Rho Rho (Ras homology) family

Probab=99.93  E-value=2.4e-24  Score=159.10  Aligned_cols=156  Identities=20%  Similarity=0.264  Sum_probs=109.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||+++|++..+. ...|+........                                        
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------   40 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSAT----------------------------------------   40 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEE----------------------------------------
Confidence            48999999999999999999987763 2222221110000                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            ....+....+.+||+||++.+.....      ..+..+|++++|+|++++.++......+...+... ..+.|+
T Consensus        41 ------~~~~~~~~~l~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~  107 (171)
T cd00157          41 ------VTVDGKQVNLGLWDTAGQEEYDRLRP------LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY-CPNVPI  107 (171)
T ss_pred             ------EEECCEEEEEEEEeCCCcccccccch------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCE
Confidence                  01113344688999999988766555      45578999999999999999887654433333222 247999


Q ss_pred             EEEEecCCCCCCCC-------------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          181 LILGNKIDKHGAAS-------------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       181 ivv~nK~Dl~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ++|+||+|+.....             .++..++.....                ..+++++||++|.|++++++++.+
T Consensus       108 ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         108 ILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG----------------AIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             EEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC----------------CeEEEEeecCCCCCHHHHHHHHhh
Confidence            99999999976432             333444444333                248999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.92  E-value=4.2e-24  Score=161.34  Aligned_cols=158  Identities=18%  Similarity=0.207  Sum_probs=112.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ||+++|++|||||||++++++..+.. ..+|.... ..                                          
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~------------------------------------------   37 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEM-HR------------------------------------------   37 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhh-ee------------------------------------------
Confidence            68999999999999999998776542 11222100 00                                          


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                         ....+.+....+.+||++|+..+...+.      .++..+|++++|+|++++.++..+..++..+.......++|++
T Consensus        38 ---~~~~~~~~~~~l~i~D~~G~~~~~~~~~------~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii  108 (198)
T cd04147          38 ---KEYEVGGVSLTLDILDTSGSYSFPAMRK------LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV  108 (198)
T ss_pred             ---EEEEECCEEEEEEEEECCCchhhhHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence               0011112234688999999988877666      5678899999999999999999888777777665444679999


Q ss_pred             EEEecCCCCCC---CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          182 ILGNKIDKHGA---ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       182 vv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+||+|+...   ...++..+.... .               ...+++++||++|.|++++++++.+.+
T Consensus       109 lv~NK~Dl~~~~~~v~~~~~~~~~~~-~---------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~  162 (198)
T cd04147         109 VVGNKADSLEEERQVPAKDALSTVEL-D---------------WNCGFVETSAKDNENVLEVFKELLRQA  162 (198)
T ss_pred             EEEEccccccccccccHHHHHHHHHh-h---------------cCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence            99999999652   122222222211 0               125799999999999999999998764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.92  E-value=4.9e-24  Score=158.07  Aligned_cols=157  Identities=19%  Similarity=0.233  Sum_probs=109.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|++|||||||++++.+..+. .+.||.+.....                                         
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-----------------------------------------   40 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-----------------------------------------   40 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-----------------------------------------
Confidence            58999999999999999999987765 233443211100                                         


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCc
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCP  179 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p  179 (249)
                           ...+.+....+.+|||+|++.+...+.      ..+..+|++++|+|++++++|..+.. |+..+...  ..+.|
T Consensus        41 -----~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~p  107 (175)
T cd01870          41 -----DIEVDGKQVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVP  107 (175)
T ss_pred             -----EEEECCEEEEEEEEeCCCchhhhhccc------cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCC
Confidence                 011223345688999999988776655      45688999999999999999988754 44444322  25799


Q ss_pred             EEEEEecCCCCCCCCH--------------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871          180 VLILGNKIDKHGAASE--------------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA  245 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  245 (249)
                      +++|+||+|+......              .+..+..+..                ...++++|||++|.|++++|++|.
T Consensus       108 iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~lf~~l~  171 (175)
T cd01870         108 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI----------------GAFGYMECSAKTKEGVREVFEMAT  171 (175)
T ss_pred             EEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc----------------CCcEEEEeccccCcCHHHHHHHHH
Confidence            9999999998653111              1122222211                125799999999999999999998


Q ss_pred             hhc
Q psy871          246 NYI  248 (249)
Q Consensus       246 ~~i  248 (249)
                      +..
T Consensus       172 ~~~  174 (175)
T cd01870         172 RAA  174 (175)
T ss_pred             HHh
Confidence            753

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.92  E-value=4e-24  Score=158.20  Aligned_cols=155  Identities=15%  Similarity=0.214  Sum_probs=110.6

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +|++++|++|+|||||++++..+.+.. +.||..   ..+                                        
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~---~~~----------------------------------------   37 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF---DNF----------------------------------------   37 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee---eee----------------------------------------
Confidence            489999999999999999998766542 223321   000                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCCCCc
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLASCP  179 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p  179 (249)
                         .....+.+....+.+||+||++++...+.      ..++.+|++++|+|++++.+|..+. .|+..+...  ..+.|
T Consensus        38 ---~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~p  106 (173)
T cd04130          38 ---SVVVLVDGKPVRLQLCDTAGQDEFDKLRP------LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAP  106 (173)
T ss_pred             ---eEEEEECCEEEEEEEEECCCChhhccccc------cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCC
Confidence               00011223345688999999988887776      5678899999999999999998875 455555432  25799


Q ss_pred             EEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871          180 VLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA  245 (249)
Q Consensus       180 ~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  245 (249)
                      +++++||+|+...              +..++...+.+...                ..++++|||++|.|++++|+.+.
T Consensus       107 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~----------------~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         107 IILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG----------------ACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             EEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC----------------CCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999998642              23344444444333                24899999999999999998875


Q ss_pred             h
Q psy871          246 N  246 (249)
Q Consensus       246 ~  246 (249)
                      .
T Consensus       171 ~  171 (173)
T cd04130         171 L  171 (173)
T ss_pred             h
Confidence            3

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0071|consensus

Probab=99.92  E-value=3.3e-24  Score=144.50  Aligned_cols=165  Identities=27%  Similarity=0.408  Sum_probs=145.5

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +..++.+|+.+|..+|||||++..|..+......||.+..++.+.                                   
T Consensus        13 f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVt-----------------------------------   57 (180)
T KOG0071|consen   13 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVT-----------------------------------   57 (180)
T ss_pred             hCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEE-----------------------------------
Confidence            457799999999999999999999999999999999998888872                                   


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                                    ..+..+.+||..|++.....++      .++....++|+|+|+.+.+..++.++++..++.+..+.
T Consensus        58 --------------ykN~kfNvwdvGGqd~iRplWr------hYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~  117 (180)
T KOG0071|consen   58 --------------YKNVKFNVWDVGGQDKIRPLWR------HYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMR  117 (180)
T ss_pred             --------------eeeeEEeeeeccCchhhhHHHH------hhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhh
Confidence                          1245678899999988888888      88888999999999999888888888999999888788


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..|+++.+||.|+..+..++++..+++.-.            ...+.+.+.++||.+|.|+.|.+.||.+.+
T Consensus       118 ~~~~LvlANkQDlp~A~~pqei~d~leLe~------------~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  118 DAIILILANKQDLPDAMKPQEIQDKLELER------------IRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             cceEEEEecCcccccccCHHHHHHHhcccc------------ccCCccEeeccccccchhHHHHHHHHHhhc
Confidence            999999999999999999999999888654            345668999999999999999999998754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=2.2e-23  Score=176.26  Aligned_cols=165  Identities=15%  Similarity=0.051  Sum_probs=108.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhh---HHHHh--hhhccc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEES---KSELQ--CLLTDE  141 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~---~~~~~--~~~~~~  141 (249)
                      .++.++|.+++|||++++++....+....+..+.++......+...+..+.+|||||..+....   .+...  .....+
T Consensus       212 ~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i  291 (472)
T PRK03003        212 RRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAI  291 (472)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHH
Confidence            5789999999999999999998876433334444444433333334556789999996422111   11111  112356


Q ss_pred             cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871          142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG  221 (249)
Q Consensus       142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (249)
                      ..+|++++|+|+++..++++.. ++..+. .   .++|+++|+||+|+.+...............            ...
T Consensus       292 ~~ad~vilV~Da~~~~s~~~~~-~~~~~~-~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l------------~~~  354 (472)
T PRK03003        292 EAAEVAVVLIDASEPISEQDQR-VLSMVI-E---AGRALVLAFNKWDLVDEDRRYYLEREIDREL------------AQV  354 (472)
T ss_pred             hcCCEEEEEEeCCCCCCHHHHH-HHHHHH-H---cCCCEEEEEECcccCChhHHHHHHHHHHHhc------------ccC
Confidence            7899999999999987777653 333332 2   5799999999999976322222222222111            011


Q ss_pred             CceeEEEeeeccccchHHHHHHHhhhc
Q psy871          222 RPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       222 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...+++++||++|.|++++++.+.+.+
T Consensus       355 ~~~~~~~~SAk~g~gv~~lf~~i~~~~  381 (472)
T PRK03003        355 PWAPRVNISAKTGRAVDKLVPALETAL  381 (472)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            236899999999999999999998754

>cd04114 Rab30 Rab30 subfamily

Probab=99.92  E-value=1.9e-23  Score=153.97  Aligned_cols=160  Identities=17%  Similarity=0.127  Sum_probs=111.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..++|+++|++|+|||||++++..+.+. ...+|++.....                                       
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---------------------------------------   46 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMI---------------------------------------   46 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEE---------------------------------------
Confidence            4579999999999999999999865543 122222211100                                       


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                            ....+.+....+.+||++|++.+.....      ..+..+|++++|+|++++.++..+..++..+.. ....+.
T Consensus        47 ------~~~~~~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~  113 (169)
T cd04114          47 ------KTVEIKGEKIKLQIWDTAGQERFRSITQ------SYYRSANALILTYDITCEESFRCLPEWLREIEQ-YANNKV  113 (169)
T ss_pred             ------EEEEECCEEEEEEEEECCCcHHHHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-hCCCCC
Confidence                  0011222234578999999988777666      567889999999999999999887767665532 223579


Q ss_pred             cEEEEEecCCCCCCC--CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGAA--SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++++||+|+.+..  ..+....+.+..                 ..++++|||++|.|++++++++.+++
T Consensus       114 ~~i~v~NK~D~~~~~~i~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         114 ITILVGNKIDLAERREVSQQRAEEFSDAQ-----------------DMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             eEEEEEECcccccccccCHHHHHHHHHHc-----------------CCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            999999999986522  222222222222                 26799999999999999999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0081|consensus

Probab=99.92  E-value=4.5e-25  Score=151.89  Aligned_cols=166  Identities=20%  Similarity=0.234  Sum_probs=130.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      |.+.+|++|+||||++.+.+++.+- ...+|++.+....       ++.+......                   +.+  
T Consensus        11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreK-------rvvY~s~gp~-------------------g~g--   62 (219)
T KOG0081|consen   11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREK-------RVVYNSSGPG-------------------GGG--   62 (219)
T ss_pred             HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccc-------eEEEeccCCC-------------------CCC--
Confidence            7788999999999999999998876 3445555444332       3333321111                   100  


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                              +.....+.+|||+|+++|.++..      ..+..+..++++||.++..+|.+...|+.++.......+..++
T Consensus        63 --------r~~rihLQlWDTAGQERFRSLTT------AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDiv  128 (219)
T KOG0081|consen   63 --------RGQRIHLQLWDTAGQERFRSLTT------AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIV  128 (219)
T ss_pred             --------cceEEEEeeeccccHHHHHHHHH------HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEE
Confidence                    12235688999999999999988      6678899999999999999999999999999887777788899


Q ss_pred             EEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          182 ILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       182 vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +++||+|+.+  .++.++..+......                 +|||++||-+|.|+++..+.|.+.
T Consensus       129 lcGNK~DL~~~R~Vs~~qa~~La~kyg-----------------lPYfETSA~tg~Nv~kave~Lldl  179 (219)
T KOG0081|consen  129 LCGNKADLEDQRVVSEDQAAALADKYG-----------------LPYFETSACTGTNVEKAVELLLDL  179 (219)
T ss_pred             EEcCccchhhhhhhhHHHHHHHHHHhC-----------------CCeeeeccccCcCHHHHHHHHHHH
Confidence            9999999977  466677888888877                 999999999999998877766553

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.92  E-value=1.6e-23  Score=176.16  Aligned_cols=164  Identities=18%  Similarity=0.137  Sum_probs=110.9

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHH-----hhhhccc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSEL-----QCLLTDE  141 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~-----~~~~~~~  141 (249)
                      .++.++|.+++|||++++++.........+..+.+.......+...+..+.+|||||..+........     ...+..+
T Consensus       173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~  252 (429)
T TIGR03594       173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAI  252 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHH
Confidence            36899999999999999999987654333344445444434443345578999999976554433211     2234567


Q ss_pred             cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC-CCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871          142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH-GAASEEEIRQYFGLYGLTTGKVATPRSEMS  220 (249)
Q Consensus       142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (249)
                      ..+|++++|+|+++..+.++.. .+... ..   .++|+++|+||+|+. +....+++.+.++...            ..
T Consensus       253 ~~ad~~ilV~D~~~~~~~~~~~-~~~~~-~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------------~~  315 (429)
T TIGR03594       253 ERADVVLLVLDATEGITEQDLR-IAGLI-LE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKL------------PF  315 (429)
T ss_pred             HhCCEEEEEEECCCCccHHHHH-HHHHH-HH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhc------------cc
Confidence            8999999999999876666542 22222 22   579999999999998 2222333333333211            11


Q ss_pred             CCceeEEEeeeccccchHHHHHHHhhh
Q psy871          221 GRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       221 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ....+++++||++|.|++++++++.+.
T Consensus       316 ~~~~~vi~~SA~~g~~v~~l~~~i~~~  342 (429)
T TIGR03594       316 LDFAPIVFISALTGQGVDKLLDAIDEV  342 (429)
T ss_pred             CCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            134789999999999999999998764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0395|consensus

Probab=99.92  E-value=6.5e-24  Score=158.28  Aligned_cols=160  Identities=21%  Similarity=0.274  Sum_probs=133.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +++||+++|.+|+|||+|+.++....+. .+.||++......                                      
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~--------------------------------------   43 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKE--------------------------------------   43 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEE--------------------------------------
Confidence            5789999999999999999999998887 5567776211111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                              ..+.+....+.++||+|++.+.....      .++..+|+.++|+++++..+|+.+..++..+.+.......
T Consensus        44 --------~~v~~~~~~l~ilDt~g~~~~~~~~~------~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~  109 (196)
T KOG0395|consen   44 --------LTVDGEVCMLEILDTAGQEEFSAMRD------LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDV  109 (196)
T ss_pred             --------EEECCEEEEEEEEcCCCcccChHHHH------HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCC
Confidence                    12234456788999999999998888      7788899999999999999999999888888766666779


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+..  .+..++..+..+.+.                 ++++++||+...+++++|..|.+.+
T Consensus       110 PivlVGNK~Dl~~~R~V~~eeg~~la~~~~-----------------~~f~E~Sak~~~~v~~~F~~L~r~~  164 (196)
T KOG0395|consen  110 PIILVGNKCDLERERQVSEEEGKALARSWG-----------------CAFIETSAKLNYNVDEVFYELVREI  164 (196)
T ss_pred             CEEEEEEcccchhccccCHHHHHHHHHhcC-----------------CcEEEeeccCCcCHHHHHHHHHHHH
Confidence            9999999999976  778888888877766                 7899999999999999999998764

>KOG0086|consensus

Probab=99.91  E-value=1.2e-23  Score=143.88  Aligned_cols=157  Identities=20%  Similarity=0.212  Sum_probs=123.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .|++++|++|+|||+|+.++....+. ....|++...+.-+        .-+                            
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrI--------inV----------------------------   53 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRI--------VNV----------------------------   53 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeeccee--------eee----------------------------
Confidence            39999999999999999999887766 34445554333321        111                            


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                               -+....+.+|||+|+++|.+..+      ++|+.+...++|+|+++.++|..+..|+...... ..+++.+
T Consensus        54 ---------GgK~vKLQIWDTAGQErFRSVtR------sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvv  117 (214)
T KOG0086|consen   54 ---------GGKTVKLQIWDTAGQERFRSVTR------SYYRGAAGALLVYDITSRDSFNALTNWLTDARTL-ASPNIVV  117 (214)
T ss_pred             ---------cCcEEEEEEeecccHHHHHHHHH------HHhccccceEEEEeccchhhHHHHHHHHHHHHhh-CCCcEEE
Confidence                     12235689999999999999999      9999999999999999999999999999887543 3378899


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ++++||.||..  +++-.+...+.+.-                 .+.+.++||++|+|+++.|-...+.
T Consensus       118 iL~GnKkDL~~~R~VtflEAs~FaqEn-----------------el~flETSa~TGeNVEEaFl~c~~t  169 (214)
T KOG0086|consen  118 ILCGNKKDLDPEREVTFLEASRFAQEN-----------------ELMFLETSALTGENVEEAFLKCART  169 (214)
T ss_pred             EEeCChhhcChhhhhhHHHHHhhhccc-----------------ceeeeeecccccccHHHHHHHHHHH
Confidence            99999999966  44555666665543                 3789999999999999988776553

>cd04129 Rho2 Rho2 subfamily

Probab=99.91  E-value=2.1e-23  Score=156.19  Aligned_cols=156  Identities=20%  Similarity=0.238  Sum_probs=108.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+|+|++|+|||||++++..+.+. .+.+|......                                          
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~------------------------------------------   39 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV------------------------------------------   39 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE------------------------------------------
Confidence            58999999999999999999865543 12222110000                                          


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCc
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCP  179 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p  179 (249)
                        .  ...+.+....+.+||++|++.+.....      ..+..+|++++++|+++.++|..+.. |+..+...  ..+.|
T Consensus        40 --~--~~~~~~~~~~l~i~Dt~g~~~~~~~~~------~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~~~p  107 (187)
T cd04129          40 --T--DCRVDGKPVQLALWDTAGQEEYERLRP------LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CPNVP  107 (187)
T ss_pred             --E--EEEECCEEEEEEEEECCCChhccccch------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence              0  001122334688999999887765544      34578999999999999999998864 55555432  24699


Q ss_pred             EEEEEecCCCCCC------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          180 VLILGNKIDKHGA------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       180 ~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +++|+||+|+...            ...++...+.+...                ..++++|||++|.|++++|+++.+.
T Consensus       108 iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~v~~~f~~l~~~  171 (187)
T cd04129         108 VILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG----------------AKKYMECSALTGEGVDDVFEAATRA  171 (187)
T ss_pred             EEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC----------------CcEEEEccCCCCCCHHHHHHHHHHH
Confidence            9999999998542            12233444444332                2479999999999999999999865

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.91  E-value=1.9e-23  Score=153.86  Aligned_cols=162  Identities=21%  Similarity=0.226  Sum_probs=98.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ++|+++|++|||||||+++|++..+... +..                                           ..  +
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~-~~~-------------------------------------------~~--t   34 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA-PYP-------------------------------------------FT--T   34 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccC-CCC-------------------------------------------Cc--c
Confidence            5899999999999999999987654210 000                                           00  0


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHH-H--HhhhhccccccceEEEEEECCChhhh--HhhHHHHHHHHhccCCC
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKS-E--LQCLLTDESLASSIVFLVDTSDRERF--EESKSELQCLLTDESLA  176 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~--~~~~~~~~~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~  176 (249)
                      .......+...+..+.+|||||+........ .  ..........+|++++|+|+++..++  .....++..+...  ..
T Consensus        35 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~  112 (168)
T cd01897          35 KSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FK  112 (168)
T ss_pred             cceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh--cC
Confidence            0000011112245789999999742111000 0  00111112346899999999987654  3333344444321  24


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.+.....+..++.+.                 ...++++|||++|.|++++++++.+.|
T Consensus       113 ~~pvilv~NK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         113 NKPVIVVLNKIDLLTFEDLSEIEEEEEL-----------------EGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             cCCeEEEEEccccCchhhHHHHHHhhhh-----------------ccCceEEEEecccCCHHHHHHHHHHHh
Confidence            7999999999999764222222222211                 237899999999999999999999875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.1e-23  Score=169.28  Aligned_cols=162  Identities=23%  Similarity=0.249  Sum_probs=112.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..|+|+|.||||||||+++|+.....   ++.+|+.+..+.+.                                     
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~-------------------------------------  201 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVR-------------------------------------  201 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEE-------------------------------------
Confidence            47999999999999999999876533   33445554444441                                     


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-CCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE-SLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~  176 (249)
                                + .....+.+||+||...-. ........+++++++++++++|+|+++.++++....+..++.... ...
T Consensus       202 ----------~-~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~  270 (335)
T PRK12299        202 ----------V-DDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELA  270 (335)
T ss_pred             ----------e-CCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence                      0 012358899999975322 222344677888999999999999998777777766666654321 124


Q ss_pred             CCcEEEEEecCCCCCCCCHH--HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEE--EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+++|+||+|+.......  ....+.+..                 ..+++++||++++|+++++++|.+.+
T Consensus       271 ~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~-----------------~~~i~~iSAktg~GI~eL~~~L~~~l  327 (335)
T PRK12299        271 DKPRILVLNKIDLLDEEEEREKRAALELAAL-----------------GGPVFLISAVTGEGLDELLRALWELL  327 (335)
T ss_pred             cCCeEEEEECcccCCchhHHHHHHHHHHHhc-----------------CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            78999999999997542211  122222211                 26799999999999999999998765

>cd01898 Obg Obg subfamily

Probab=99.91  E-value=3.2e-23  Score=152.93  Aligned_cols=119  Identities=18%  Similarity=0.155  Sum_probs=81.4

Q ss_pred             eEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCCh-hhhHhhHHHHHHHHhcc-CCCCCcEEEEEecCCCC
Q psy871          114 AIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDR-ERFEESKSELQCLLTDE-SLASCPVLILGNKIDKH  190 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~  190 (249)
                      ..+.+|||||+..... .......++..+..+|++++|+|++++ +++..+..+.+.+.... ...++|+++|+||+|+.
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  127 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL  127 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence            3689999999642211 112223444556789999999999998 77777766666654321 12478999999999997


Q ss_pred             CCCCHHH-HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          191 GAASEEE-IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       191 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.....+ ........                ...+++++||+++.|++++++++.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~i~~~~  170 (170)
T cd01898         128 DEEELFELLKELLKEL----------------WGKPVFPISALTGEGLDELLRKLAELL  170 (170)
T ss_pred             CchhhHHHHHHHHhhC----------------CCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence            6433322 22222221                126799999999999999999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.91  E-value=8e-23  Score=156.38  Aligned_cols=160  Identities=18%  Similarity=0.253  Sum_probs=117.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      +..+||+++|++|||||||++++..+.+. .+.||++.......                                    
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~------------------------------------   50 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLK------------------------------------   50 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEE------------------------------------
Confidence            45789999999999999999887766554 45566654333221                                    


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               .........+.+||++|++.+...+.      .++..++++++|+|.++..++..+..|+..+...  ..+
T Consensus        51 ---------~~~~~~~i~i~~~Dt~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~  113 (215)
T PTZ00132         51 ---------FYTNCGPICFNVWDTAGQEKFGGLRD------GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CEN  113 (215)
T ss_pred             ---------EEECCeEEEEEEEECCCchhhhhhhH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCC
Confidence                     00122345688999999988876665      5567889999999999999999988887777543  257


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++++||+|+.+.....+..++.+...                 +.++++||++|.|+++.+.+|++.+
T Consensus       114 ~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~~~v~~~f~~ia~~l  167 (215)
T PTZ00132        114 IPIVLVGNKVDVKDRQVKARQITFHRKKN-----------------LQYYDISAKSNYNFEKPFLWLARRL  167 (215)
T ss_pred             CCEEEEEECccCccccCCHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999865322223333333322                 6899999999999999999998754

>cd01890 LepA LepA subfamily

Probab=99.91  E-value=4.4e-23  Score=153.48  Aligned_cols=113  Identities=20%  Similarity=0.198  Sum_probs=80.1

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      +.+..+.+|||||++.+.....      .++..+|++++|+|+++..++.....+ .... .   .++|+++|+||+|+.
T Consensus        64 ~~~~~~~l~Dt~G~~~~~~~~~------~~~~~ad~~i~v~D~~~~~~~~~~~~~-~~~~-~---~~~~iiiv~NK~Dl~  132 (179)
T cd01890          64 GQEYLLNLIDTPGHVDFSYEVS------RSLAACEGALLLVDATQGVEAQTLANF-YLAL-E---NNLEIIPVINKIDLP  132 (179)
T ss_pred             CCcEEEEEEECCCChhhHHHHH------HHHHhcCeEEEEEECCCCccHhhHHHH-HHHH-H---cCCCEEEEEECCCCC
Confidence            4456788999999998876665      567789999999999987666554433 2222 2   578999999999986


Q ss_pred             CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          191 GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +....+...++.+...              ....+++++||++|.|+++++++|.+.+
T Consensus       133 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         133 SADPERVKQQIEDVLG--------------LDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             cCCHHHHHHHHHHHhC--------------CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            5322222223222222              1124589999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK15494 era GTPase Era; Provisional

Probab=99.90  E-value=7.8e-23  Score=165.57  Aligned_cols=164  Identities=18%  Similarity=0.255  Sum_probs=107.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+..+|+++|++|||||||+|+|++..+..+.|+...+...+                                      
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~--------------------------------------   91 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSII--------------------------------------   91 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcE--------------------------------------
Confidence            455699999999999999999998876653333322221111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchh-hhhhHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                             ...+...+..+.+|||||... +..... ........+..+|++++|+|+.+  ++.....++...+..   .
T Consensus        92 -------~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~  159 (339)
T PRK15494         92 -------TGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---L  159 (339)
T ss_pred             -------EEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---c
Confidence                   011112234689999999743 333332 22334455789999999999876  344433333333332   4


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|.++|+||+|+.+. ...++.+.++...               ...+++++||++|.|+++++++|.+.+
T Consensus       160 ~~p~IlViNKiDl~~~-~~~~~~~~l~~~~---------------~~~~i~~iSAktg~gv~eL~~~L~~~l  215 (339)
T PRK15494        160 NIVPIFLLNKIDIESK-YLNDIKAFLTENH---------------PDSLLFPISALSGKNIDGLLEYITSKA  215 (339)
T ss_pred             CCCEEEEEEhhcCccc-cHHHHHHHHHhcC---------------CCcEEEEEeccCccCHHHHHHHHHHhC
Confidence            5788899999999754 3444544444321               236799999999999999999998865

>TIGR00436 era GTP-binding protein Era

Probab=99.90  E-value=8.9e-23  Score=160.99  Aligned_cols=160  Identities=16%  Similarity=0.182  Sum_probs=102.5

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      +|+++|+||||||||+|+|++..+....+..+.+...+                                          
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i------------------------------------------   39 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI------------------------------------------   39 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE------------------------------------------
Confidence            79999999999999999999876543222111111111                                          


Q ss_pred             eceeccccccceEEEEEeCCCchhh-hhhHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERF-EESKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                         .......+..+.+|||||.... ....+ ....+...+..+|++++|+|+++..+..   ..+...+..   .+.|+
T Consensus        40 ---~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~  110 (270)
T TIGR00436        40 ---SGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG---EFVLTKLQN---LKRPV  110 (270)
T ss_pred             ---EEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH---HHHHHHHHh---cCCCE
Confidence               1111122346889999997543 22222 2233456678999999999999876553   233333333   57999


Q ss_pred             EEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+.+.   ++.......+..            .....+++++||++|.|+++++++|.+.+
T Consensus       111 ilV~NK~Dl~~~---~~~~~~~~~~~~------------~~~~~~v~~iSA~~g~gi~~L~~~l~~~l  163 (270)
T TIGR00436       111 VLTRNKLDNKFK---DKLLPLIDKYAI------------LEDFKDIVPISALTGDNTSFLAAFIEVHL  163 (270)
T ss_pred             EEEEECeeCCCH---HHHHHHHHHHHh------------hcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence            999999999742   222222222210            00113799999999999999999998765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG0088|consensus

Probab=99.90  E-value=1e-23  Score=145.08  Aligned_cols=159  Identities=23%  Similarity=0.253  Sum_probs=126.3

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .+|++++|.--+|||||+-|++.+.|...                            .-+++-..+.+.           
T Consensus        13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~k----------------------------HlsTlQASF~~k-----------   53 (218)
T KOG0088|consen   13 KFKIVLLGEGCVGKTSLVLRYVENKFNCK----------------------------HLSTLQASFQNK-----------   53 (218)
T ss_pred             eeEEEEEcCCccchhHHHHHHHHhhcchh----------------------------hHHHHHHHHhhc-----------
Confidence            56999999999999999999976555410                            011111111111           


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ...++++...+.+|||+|+++|.++..      -+|..++..++|+|+++.++|+..+.|..++..- ....+.+
T Consensus        54 -----k~n~ed~ra~L~IWDTAGQErfHALGP------IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l  121 (218)
T KOG0088|consen   54 -----KVNVEDCRADLHIWDTAGQERFHALGP------IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTM-LGNEIEL  121 (218)
T ss_pred             -----ccccccceeeeeeeeccchHhhhccCc------eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHH-hCCeeEE
Confidence                 122345566799999999999999998      8899999999999999999999999999988543 2256889


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ++|+||+||.+  +++.++.+.+.+..+                 ..++++||+.+.|+.++|+.|...
T Consensus       122 ~IVGNKiDLEeeR~Vt~qeAe~YAesvG-----------------A~y~eTSAk~N~Gi~elFe~Lt~~  173 (218)
T KOG0088|consen  122 LIVGNKIDLEEERQVTRQEAEAYAESVG-----------------ALYMETSAKDNVGISELFESLTAK  173 (218)
T ss_pred             EEecCcccHHHhhhhhHHHHHHHHHhhc-----------------hhheecccccccCHHHHHHHHHHH
Confidence            99999999965  678899999998877                 889999999999999999998764

>KOG0076|consensus

Probab=99.90  E-value=5.4e-24  Score=148.84  Aligned_cols=171  Identities=32%  Similarity=0.493  Sum_probs=136.5

Q ss_pred             HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCC--------CCCCCCCCcccceeeeeeeeceEEEEcCC
Q psy871            4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL--------AQPVPTLHPILGYLGLWTKSGKLLFLGLD   75 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~~~g~~   75 (249)
                      +|.++.        .+..+.++|+|+-+||||||+.++....-        +.-.||.+...+.+               
T Consensus         8 l~~~~~--------~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i---------------   64 (197)
T KOG0076|consen    8 LYKYMF--------KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTI---------------   64 (197)
T ss_pred             HHHHHh--------hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecce---------------
Confidence            666654        46678999999999999999999864321        12223333333333               


Q ss_pred             CCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC
Q psy871           76 NAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD  155 (249)
Q Consensus        76 ~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~  155 (249)
                                                        +-+...+.+||..|++..++++.      .+|..+|++++++|+++
T Consensus        65 ----------------------------------~v~~~~l~fwdlgGQe~lrSlw~------~yY~~~H~ii~viDa~~  104 (197)
T KOG0076|consen   65 ----------------------------------EVCNAPLSFWDLGGQESLRSLWK------KYYWLAHGIIYVIDATD  104 (197)
T ss_pred             ----------------------------------eeccceeEEEEcCChHHHHHHHH------HHHHHhceeEEeecCCC
Confidence                                              22355789999999999999999      88999999999999999


Q ss_pred             hhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc
Q psy871          156 RERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ  235 (249)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  235 (249)
                      ++.|+.....++.+.......+.|+++.+||.|+.+.....++...+....           ....++.++.+|||.+|+
T Consensus       105 ~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e-----------~~~~rd~~~~pvSal~ge  173 (197)
T KOG0076|consen  105 RERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAE-----------LIPRRDNPFQPVSALTGE  173 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhh-----------hcCCccCccccchhhhcc
Confidence            999998888888888887788999999999999998877888877776422           133466899999999999


Q ss_pred             chHHHHHHHhhhc
Q psy871          236 GYGDGFRWLANYI  248 (249)
Q Consensus       236 gv~~l~~~l~~~i  248 (249)
                      |+++..+|+...+
T Consensus       174 gv~egi~w~v~~~  186 (197)
T KOG0076|consen  174 GVKEGIEWLVKKL  186 (197)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999998765

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=9.6e-23  Score=163.84  Aligned_cols=164  Identities=22%  Similarity=0.224  Sum_probs=111.6

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..|+++|.||||||||+++|+.....   ++.+|..+..+.+.                                     
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~-------------------------------------  200 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVR-------------------------------------  200 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEE-------------------------------------
Confidence            48999999999999999999876532   23444444433331                                     


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHhc-c
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLTD-E  173 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~-~  173 (249)
                                + .....+.+||+||..... ........+++++++++++++|+|+++.   +++..+..+..++... .
T Consensus       201 ----------~-~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~  269 (329)
T TIGR02729       201 ----------V-DDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP  269 (329)
T ss_pred             ----------e-CCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh
Confidence                      0 012468899999975432 2223445677888999999999999976   5566655454444322 1


Q ss_pred             CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      ...++|+++|+||+|+..+...++..+.+...                ...+++++||++++|+++++++|.+.+.
T Consensus       270 ~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~----------------~~~~vi~iSAktg~GI~eL~~~I~~~l~  329 (329)
T TIGR02729       270 ELAEKPRIVVLNKIDLLDEEELAELLKELKKA----------------LGKPVFPISALTGEGLDELLYALAELLE  329 (329)
T ss_pred             hhccCCEEEEEeCccCCChHHHHHHHHHHHHH----------------cCCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence            23579999999999997642222222222211                1157999999999999999999998763

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0074|consensus

Probab=99.90  E-value=3.1e-23  Score=140.08  Aligned_cols=175  Identities=31%  Similarity=0.393  Sum_probs=147.8

Q ss_pred             HHhhhcccccc-eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHH
Q psy871            8 FTGVLGYLGLW-TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHML   86 (249)
Q Consensus         8 ~~~~~~~~~~~-~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l   86 (249)
                      +-.++.+.+-+ .+++||+++|--++|||||+..|.++.++...||.+.....++.                        
T Consensus         3 l~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~------------------------   58 (185)
T KOG0074|consen    3 LETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEY------------------------   58 (185)
T ss_pred             HHHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEee------------------------
Confidence            33445555444 78999999999999999999999999999989999887777621                        


Q ss_pred             hcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHH
Q psy871           87 KDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSEL  166 (249)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~  166 (249)
                                              ..+..+.+||..|+......+.      .+|+..|.++||+|+++...|+++...+
T Consensus        59 ------------------------~g~f~LnvwDiGGqr~IRpyWs------NYyenvd~lIyVIDS~D~krfeE~~~el  108 (185)
T KOG0074|consen   59 ------------------------DGTFHLNVWDIGGQRGIRPYWS------NYYENVDGLIYVIDSTDEKRFEEISEEL  108 (185)
T ss_pred             ------------------------cCcEEEEEEecCCccccchhhh------hhhhccceEEEEEeCCchHhHHHHHHHH
Confidence                                    2245789999999988888888      8899999999999999999999998899


Q ss_pred             HHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          167 QCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       167 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      -+++........|+.+..||.|+..+...+++...++...            ...+.+.+.+|||.+++|+.+..+|++.
T Consensus       109 ~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~------------lrdRswhIq~csals~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  109 VELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAG------------LRDRSWHIQECSALSLEGSTDGSDWVQS  176 (185)
T ss_pred             HHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhh------------hhhceEEeeeCccccccCccCcchhhhc
Confidence            9999888888999999999999998777777766666544            5567799999999999999999999886


Q ss_pred             hc
Q psy871          247 YI  248 (249)
Q Consensus       247 ~i  248 (249)
                      ..
T Consensus       177 n~  178 (185)
T KOG0074|consen  177 NP  178 (185)
T ss_pred             CC
Confidence            54

>COG1159 Era GTPase [General function prediction only]

Probab=99.90  E-value=1.6e-22  Score=154.76  Aligned_cols=166  Identities=20%  Similarity=0.219  Sum_probs=116.6

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++...|+++|+||||||||+|+|.+..++...+                                             .
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~---------------------------------------------k   37 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSP---------------------------------------------K   37 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecC---------------------------------------------C
Confidence            4677889999999999999999998877663222                                             3


Q ss_pred             cccceeceeccccccceEEEEEeCCCchh-hhhhHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                      +.+|+......+...+..++++||||... -..+.+ +.......+..+|++++|+|++++..-.+  +++.+.++.   
T Consensus        38 ~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~---  112 (298)
T COG1159          38 PQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK---  112 (298)
T ss_pred             cchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh---
Confidence            33334344444555578899999999443 233333 33455677899999999999999544322  234443332   


Q ss_pred             CCCcEEEEEecCCCCCCCC-HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGAAS-EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.|+++++||+|+..... .....+.+....               ....++++||++|.|++.+.+.+..++
T Consensus       113 ~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~---------------~f~~ivpiSA~~g~n~~~L~~~i~~~L  171 (298)
T COG1159         113 TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL---------------PFKEIVPISALKGDNVDTLLEIIKEYL  171 (298)
T ss_pred             cCCCeEEEEEccccCCcHHHHHHHHHHHHhhC---------------CcceEEEeeccccCCHHHHHHHHHHhC
Confidence            5689999999999987533 233333333322               335899999999999999999998876

>KOG0095|consensus

Probab=99.90  E-value=4.9e-23  Score=140.44  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=119.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|..|+|||+|+++++.+-+++ ...|++...-+.                                        
T Consensus         8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmik----------------------------------------   47 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK----------------------------------------   47 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEE----------------------------------------
Confidence            599999999999999999999887663 223444332222                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ...+.+....+.+|||+|+++|.++.+      ++|+.+|++++|+|++-..+|.-+-+|+.++.... ..+.--
T Consensus        48 -----tvev~gekiklqiwdtagqerfrsitq------syyrsahalilvydiscqpsfdclpewlreie~ya-n~kvlk  115 (213)
T KOG0095|consen   48 -----TVEVNGEKIKLQIWDTAGQERFRSITQ------SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYA-NNKVLK  115 (213)
T ss_pred             -----EEEECCeEEEEEEeeccchHHHHHHHH------HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHh-hcceEE
Confidence                 112344556799999999999999999      99999999999999999999999999999886543 245566


Q ss_pred             EEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||.|+.+.  ++.+-.+++.+..                 +.-+.++||+...|++.+|..++-++
T Consensus       116 ilvgnk~d~~drrevp~qigeefs~~q-----------------dmyfletsakea~nve~lf~~~a~rl  168 (213)
T KOG0095|consen  116 ILVGNKIDLADRREVPQQIGEEFSEAQ-----------------DMYFLETSAKEADNVEKLFLDLACRL  168 (213)
T ss_pred             EeeccccchhhhhhhhHHHHHHHHHhh-----------------hhhhhhhcccchhhHHHHHHHHHHHH
Confidence            899999999763  2222223333322                 25689999999999999999887543

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=3.1e-23  Score=147.66  Aligned_cols=153  Identities=20%  Similarity=0.166  Sum_probs=94.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ++|+++|.||+|||||+|+|++.+...                       --++                     |  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v-----------------------~n~p---------------------G--~T   34 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKV-----------------------GNWP---------------------G--TT   34 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEE-----------------------EEST---------------------T--SS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcee-----------------------cCCC---------------------C--CC
Confidence            479999999999999999998865331                       1111                     1  11


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhcc--ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTD--ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                      .......+...+..+.++|+||..++........-...+  ....|++++|+|+++.+.-..   ...+++.    .++|
T Consensus        35 v~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~---l~~ql~e----~g~P  107 (156)
T PF02421_consen   35 VEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLY---LTLQLLE----LGIP  107 (156)
T ss_dssp             SEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHH---HHHHHHH----TTSS
T ss_pred             eeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHH---HHHHHHH----cCCC
Confidence            111112233345789999999965544333211111122  367999999999998643332   3334332    6899


Q ss_pred             EEEEEecCCCCCCCCH-HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871          180 VLILGNKIDKHGAASE-EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL  244 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  244 (249)
                      +++++||+|+...... -+...+.+.++                 +|++++||++++|++++++.+
T Consensus       108 ~vvvlN~~D~a~~~g~~id~~~Ls~~Lg-----------------~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  108 VVVVLNKMDEAERKGIEIDAEKLSERLG-----------------VPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             EEEEEETHHHHHHTTEEE-HHHHHHHHT-----------------S-EEEEBTTTTBTHHHHHHHH
T ss_pred             EEEEEeCHHHHHHcCCEECHHHHHHHhC-----------------CCEEEEEeCCCcCHHHHHhhC
Confidence            9999999998652111 12334444445                 899999999999999999764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01878 HflX HflX subfamily

Probab=99.90  E-value=2.1e-22  Score=152.90  Aligned_cols=159  Identities=21%  Similarity=0.257  Sum_probs=103.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCC---CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ---PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++|+|+|++|||||||++++++..+..   +.+|.......+                                     
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~-------------------------------------   83 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRL-------------------------------------   83 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEE-------------------------------------
Confidence            4799999999999999999998865321   111211111110                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhh--hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                .+.+ ...+.+|||||....  ......+......+..+|++++|+|++++.++.....+. +++.....
T Consensus        84 ----------~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~-~~l~~~~~  151 (204)
T cd01878          84 ----------RLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVE-KVLKELGA  151 (204)
T ss_pred             ----------EecC-CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHH-HHHHHcCc
Confidence                      0111 126889999997321  111122223334467899999999999987776654333 33333333


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.|+++|+||+|+.......   .....                 ...+++++||++|.|+++++++|.++|
T Consensus       152 ~~~~viiV~NK~Dl~~~~~~~---~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         152 EDIPMILVLNKIDLLDDEELE---ERLEA-----------------GRPDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             CCCCEEEEEEccccCChHHHH---HHhhc-----------------CCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence            578999999999997642221   11211                 236799999999999999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.7e-22  Score=168.40  Aligned_cols=161  Identities=25%  Similarity=0.259  Sum_probs=106.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..|+|||.||||||||+|+|++....   ++.+|+.+..+.+                                      
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv--------------------------------------  201 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVV--------------------------------------  201 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEE--------------------------------------
Confidence            48999999999999999999876543   2344444444433                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCCh----hhhHhhH---HHHHHHH
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDR----ERFEESK---SELQCLL  170 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----~~~~~~~---~~~~~~~  170 (249)
                                 ...+..+.++|+||...- .........+++++.+++++++|+|+++.    +.+.++.   ..+..+.
T Consensus       202 -----------~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~  270 (500)
T PRK12296        202 -----------QAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYA  270 (500)
T ss_pred             -----------EECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhh
Confidence                       112345889999996432 22223445677888999999999999853    3333333   3333332


Q ss_pred             hcc-------CCCCCcEEEEEecCCCCCCCCH-HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871          171 TDE-------SLASCPVLILGNKIDKHGAASE-EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR  242 (249)
Q Consensus       171 ~~~-------~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  242 (249)
                      ...       ...++|+++|+||+|+.+.... +.+...+...                 .++++++||+++.|+++++.
T Consensus       271 ~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~-----------------g~~Vf~ISA~tgeGLdEL~~  333 (500)
T PRK12296        271 PALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR-----------------GWPVFEVSAASREGLRELSF  333 (500)
T ss_pred             hcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc-----------------CCeEEEEECCCCCCHHHHHH
Confidence            110       2357999999999999753211 1122222211                 26899999999999999999


Q ss_pred             HHhhhc
Q psy871          243 WLANYI  248 (249)
Q Consensus       243 ~l~~~i  248 (249)
                      +|.+.+
T Consensus       334 ~L~ell  339 (500)
T PRK12296        334 ALAELV  339 (500)
T ss_pred             HHHHHH
Confidence            998765

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.89  E-value=3.2e-22  Score=162.20  Aligned_cols=158  Identities=25%  Similarity=0.281  Sum_probs=106.8

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++|+++|.+|||||||+|+|++.++.   .+.+|.++....+                                     
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i-------------------------------------  231 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRL-------------------------------------  231 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEE-------------------------------------
Confidence            379999999999999999999986532   2233433322222                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchh--hhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRER--FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~--~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                .++ ....+.+|||+|..+  .....+.+...+..+..+|++++|+|++++..+..... +..++.....
T Consensus       232 ----------~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~  299 (351)
T TIGR03156       232 ----------DLP-DGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEA-VEKVLEELGA  299 (351)
T ss_pred             ----------EeC-CCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHH-HHHHHHHhcc
Confidence                      011 123688999999732  23333444455667889999999999999877766543 2333333333


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .++|+++|+||+|+...   .++.....                  ...+++++||++|.|+++++++|.+.+
T Consensus       300 ~~~piIlV~NK~Dl~~~---~~v~~~~~------------------~~~~~i~iSAktg~GI~eL~~~I~~~~  351 (351)
T TIGR03156       300 EDIPQLLVYNKIDLLDE---PRIERLEE------------------GYPEAVFVSAKTGEGLDLLLEAIAERL  351 (351)
T ss_pred             CCCCEEEEEEeecCCCh---HhHHHHHh------------------CCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence            57899999999999753   22221111                  013589999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=8.2e-22  Score=166.01  Aligned_cols=164  Identities=18%  Similarity=0.144  Sum_probs=112.3

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHH-----Hhhhhccc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE-----LQCLLTDE  141 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~-----~~~~~~~~  141 (249)
                      -++.++|.+++|||++++++.........+..+.++......+...+..+.++||||..........     ....+..+
T Consensus       174 ~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~  253 (435)
T PRK00093        174 IKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAI  253 (435)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHH
Confidence            4788999999999999999997765444444455555554444445567899999996543332211     12334567


Q ss_pred             cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871          142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG  221 (249)
Q Consensus       142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (249)
                      ..+|++++|+|+++..+.++.  .+...+..   .+.|+++++||+|+.+....+++.+.+....            ...
T Consensus       254 ~~ad~~ilViD~~~~~~~~~~--~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l------------~~~  316 (435)
T PRK00093        254 ERADVVLLVIDATEGITEQDL--RIAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRL------------PFL  316 (435)
T ss_pred             HHCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhc------------ccc
Confidence            889999999999987666554  22333322   5799999999999985433334443333221            112


Q ss_pred             CceeEEEeeeccccchHHHHHHHhhh
Q psy871          222 RPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       222 ~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ...+++++||++|.|++++++.+.+.
T Consensus       317 ~~~~i~~~SA~~~~gv~~l~~~i~~~  342 (435)
T PRK00093        317 DYAPIVFISALTGQGVDKLLEAIDEA  342 (435)
T ss_pred             cCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            34789999999999999999988753

>KOG0072|consensus

Probab=99.89  E-value=4.8e-23  Score=139.57  Aligned_cols=168  Identities=24%  Similarity=0.352  Sum_probs=139.9

Q ss_pred             ccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      -|-.+.++.++.++|.-|+||||.+.++.-++.....||++..++.+    +                            
T Consensus        11 ~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v----~----------------------------   58 (182)
T KOG0072|consen   11 ALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETV----P----------------------------   58 (182)
T ss_pred             HhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccc----c----------------------------
Confidence            33344588899999999999999999999999888899998888777    1                            


Q ss_pred             ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                                       ..+..+.+||..|+.+....++      .+++..|++|+|+|.++.+.......++..++.+.
T Consensus        59 -----------------yKNLk~~vwdLggqtSirPyWR------cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~  115 (182)
T KOG0072|consen   59 -----------------YKNLKFQVWDLGGQTSIRPYWR------CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEE  115 (182)
T ss_pred             -----------------cccccceeeEccCcccccHHHH------HHhcccceEEEEEeccchhhhhhhHHHHHHHhccH
Confidence                             1234577888888877777777      77788888888888888888877777888888888


Q ss_pred             CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.+..+++++||.|........++...+....            ...+.+.+|++||.+|+|+++.++||.+-+
T Consensus       116 eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~------------Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l  178 (182)
T KOG0072|consen  116 ELQHAKLLVFANKQDYSGALTRSEVLKMLGLQK------------LKDRIWQIVKTSAVKGEGLDPAMDWLQRPL  178 (182)
T ss_pred             hhcCceEEEEeccccchhhhhHHHHHHHhChHH------------HhhheeEEEeeccccccCCcHHHHHHHHHH
Confidence            888899999999999988888888887777654            445669999999999999999999998865

>KOG0083|consensus

Probab=99.89  E-value=4.7e-24  Score=142.65  Aligned_cols=154  Identities=21%  Similarity=0.245  Sum_probs=120.9

Q ss_pred             EeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccccee
Q psy871           26 FLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRR  103 (249)
Q Consensus        26 vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~  103 (249)
                      ++|.+++|||+|+-|+.++.+.  ...+|++.+..-.                                           
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnk-------------------------------------------   38 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNK-------------------------------------------   38 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccc-------------------------------------------
Confidence            7899999999999998776554  2223332111110                                           


Q ss_pred             ceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEE
Q psy871          104 VWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL  183 (249)
Q Consensus       104 ~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  183 (249)
                      .  ..+.+....+.+|||.|+++|.+...      .+|+.+|++++++|+.+..+|.+.+.|+.++-+ .......++++
T Consensus        39 l--i~~~~~kvklqiwdtagqerfrsvt~------ayyrda~allllydiankasfdn~~~wlsei~e-y~k~~v~l~ll  109 (192)
T KOG0083|consen   39 L--IDMDDKKVKLQIWDTAGQERFRSVTH------AYYRDADALLLLYDIANKASFDNCQAWLSEIHE-YAKEAVALMLL  109 (192)
T ss_pred             e--eccCCcEEEEEEeeccchHHHhhhhH------hhhcccceeeeeeecccchhHHHHHHHHHHHHH-HHHhhHhHhhh
Confidence            0  11234456799999999999999998      889999999999999999999999999988743 33356889999


Q ss_pred             EecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          184 GNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       184 ~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +||||+..  .+..++-+...+..+                 +|++++||++|.|++..|..|++.+
T Consensus       110 gnk~d~a~er~v~~ddg~kla~~y~-----------------ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen  110 GNKCDLAHERAVKRDDGEKLAEAYG-----------------IPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             ccccccchhhccccchHHHHHHHHC-----------------CCceeccccccccHhHHHHHHHHHH
Confidence            99999944  566778888888777                 8999999999999999998887653

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=6.1e-22  Score=163.08  Aligned_cols=159  Identities=22%  Similarity=0.265  Sum_probs=109.6

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .|+++|.||||||||+++|++....   ++.+|..+..+.+.                                      
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~--------------------------------------  201 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVE--------------------------------------  201 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEE--------------------------------------
Confidence            8999999999999999999976533   33444444333331                                      


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHhc-cC
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLTD-ES  174 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~-~~  174 (249)
                               + ..+..+.+||+||..... ........+++++++++++++|+|+++.   +++.+...+..++... ..
T Consensus       202 ---------~-~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~  271 (424)
T PRK12297        202 ---------T-DDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPR  271 (424)
T ss_pred             ---------E-eCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchh
Confidence                     0 012358999999975422 2223446678888999999999999864   4555554444444321 12


Q ss_pred             CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..++|+++|+||+|+..  ..+.+..+.+...                 .+++++||++++|+++++++|.+.+
T Consensus       272 L~~kP~IVV~NK~DL~~--~~e~l~~l~~~l~-----------------~~i~~iSA~tgeGI~eL~~~L~~~l  326 (424)
T PRK12297        272 LLERPQIVVANKMDLPE--AEENLEEFKEKLG-----------------PKVFPISALTGQGLDELLYAVAELL  326 (424)
T ss_pred             ccCCcEEEEEeCCCCcC--CHHHHHHHHHHhC-----------------CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence            35799999999999843  2344444444332                 5799999999999999999998765

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.88  E-value=6e-22  Score=141.81  Aligned_cols=103  Identities=19%  Similarity=0.176  Sum_probs=71.0

Q ss_pred             EEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC-CCCH
Q psy871          117 FLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG-AASE  195 (249)
Q Consensus       117 ~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~  195 (249)
                      .+|||||....  ...........++.+|++++|+|++++.++...  .+.+.      ...|+++|+||+|+.+ ....
T Consensus        38 ~~iDt~G~~~~--~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~--~~~~~------~~~p~ilv~NK~Dl~~~~~~~  107 (142)
T TIGR02528        38 GAIDTPGEYVE--NRRLYSALIVTAADADVIALVQSATDPESRFPP--GFASI------FVKPVIGLVTKIDLAEADVDI  107 (142)
T ss_pred             eeecCchhhhh--hHHHHHHHHHHhhcCCEEEEEecCCCCCcCCCh--hHHHh------ccCCeEEEEEeeccCCcccCH
Confidence            46899996311  112222233457899999999999999887652  22222      1349999999999965 3344


Q ss_pred             HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871          196 EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA  245 (249)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  245 (249)
                      ++..++++...                ..+++++||++|.|++++++++.
T Consensus       108 ~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       108 ERAKELLETAG----------------AEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             HHHHHHHHHcC----------------CCcEEEEecCCCCCHHHHHHHHh
Confidence            45555555433                13799999999999999999885

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04171 SelB SelB subfamily

Probab=99.88  E-value=1.1e-21  Score=143.82  Aligned_cols=107  Identities=17%  Similarity=0.136  Sum_probs=71.0

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      ...+.+|||||++++.....      ..+..+|++++|+|+++   +.+...+    .. +...  ...|+++++||+|+
T Consensus        50 ~~~~~~~DtpG~~~~~~~~~------~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~-~~~~--~~~~~ilv~NK~Dl  116 (164)
T cd04171          50 GKRLGFIDVPGHEKFIKNML------AGAGGIDLVLLVVAADEGIMPQTREHL----EI-LELL--GIKRGLVVLTKADL  116 (164)
T ss_pred             CcEEEEEECCChHHHHHHHH------hhhhcCCEEEEEEECCCCccHhHHHHH----HH-HHHh--CCCcEEEEEECccc
Confidence            34689999999987754333      56778999999999987   2222222    11 1111  22499999999999


Q ss_pred             CCCCC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          190 HGAAS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       190 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      .....    .+++.+.++...              ....+++++||++|.|++++++.+..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         117 VDEDWLELVEEEIRELLAGTF--------------LADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             cCHHHHHHHHHHHHHHHHhcC--------------cCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            75321    122333332210              12378999999999999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.88  E-value=3.6e-21  Score=141.66  Aligned_cols=162  Identities=20%  Similarity=0.245  Sum_probs=101.6

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCC-CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +.|+++|++|+|||||+++|+..++... .++........                                        
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~----------------------------------------   40 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAF----------------------------------------   40 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccE----------------------------------------
Confidence            4699999999999999999987654421 00000000000                                        


Q ss_pred             ceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          101 TRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       101 ~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                         .  .... ..+..+.+|||||++.+...+.      ..+..+|++++|+|+++....... ..+..+ ..   .++|
T Consensus        41 ---~--~~~~~~~~~~~~iiDtpG~~~~~~~~~------~~~~~~d~il~v~d~~~~~~~~~~-~~~~~~-~~---~~~p  104 (168)
T cd01887          41 ---E--VPAEVLKIPGITFIDTPGHEAFTNMRA------RGASLTDIAILVVAADDGVMPQTI-EAIKLA-KA---ANVP  104 (168)
T ss_pred             ---E--EecccCCcceEEEEeCCCcHHHHHHHH------HHHhhcCEEEEEEECCCCccHHHH-HHHHHH-HH---cCCC
Confidence               0  0000 1245688999999988776665      456789999999999885322221 122222 22   5789


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +++|+||+|+.... .+.+...+........       +......+++++||++|.|+++++++|.++
T Consensus       105 ~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  164 (168)
T cd01887         105 FIVALNKIDKPNAN-PERVKNELSELGLQGE-------DEWGGDVQIVPTSAKTGEGIDDLLEAILLL  164 (168)
T ss_pred             EEEEEEceeccccc-HHHHHHHHHHhhcccc-------ccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence            99999999987532 3333333332210000       001134689999999999999999999875

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=4.1e-21  Score=169.64  Aligned_cols=165  Identities=14%  Similarity=0.051  Sum_probs=109.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhH---HHH--hhhhccc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK---SEL--QCLLTDE  141 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~---~~~--~~~~~~~  141 (249)
                      .++.++|.+++|||+|++++....+....+..+.++......+...+..+.+|||||..+.....   +.+  ......+
T Consensus       451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i  530 (712)
T PRK09518        451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAI  530 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHh
Confidence            58999999999999999999988754333333444444333333344567799999964211111   111  1123456


Q ss_pred             cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871          142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG  221 (249)
Q Consensus       142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (249)
                      +.+|++++|+|+++..+.++.. .+..+..    .++|+++|+||+|+.+....+.+...++...            ...
T Consensus       531 ~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l------------~~~  593 (712)
T PRK09518        531 ERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEF------------DRV  593 (712)
T ss_pred             hcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhc------------cCC
Confidence            8899999999999987776653 3333322    5799999999999976433333433333211            112


Q ss_pred             CceeEEEeeeccccchHHHHHHHhhhc
Q psy871          222 RPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       222 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...+++++||++|.|++++++.+.+.+
T Consensus       594 ~~~~ii~iSAktg~gv~~L~~~i~~~~  620 (712)
T PRK09518        594 TWARRVNLSAKTGWHTNRLAPAMQEAL  620 (712)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            336789999999999999999987653

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=3.2e-21  Score=154.16  Aligned_cols=166  Identities=20%  Similarity=0.247  Sum_probs=105.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++...|+|+|+||||||||+|+|++..+....+........                                       
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~---------------------------------------   43 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHR---------------------------------------   43 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccccc---------------------------------------
Confidence            56778999999999999999999876654322221111111                                       


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhh-HHH-HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEES-KSE-LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~-~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                            ........+..+.++||||....... .+. .......+..+|++++|+|+++.  +.....++...+..   .
T Consensus        44 ------i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~  112 (292)
T PRK00089         44 ------IRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--IGPGDEFILEKLKK---V  112 (292)
T ss_pred             ------EEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHhh---c
Confidence                  11111122357899999996543321 111 22334567889999999999983  22222233333332   5


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+...  .++....++.+..            .....+++++||+++.|+++++++|.+.+
T Consensus       113 ~~pvilVlNKiDl~~~--~~~l~~~~~~l~~------------~~~~~~i~~iSA~~~~gv~~L~~~L~~~l  170 (292)
T PRK00089        113 KTPVILVLNKIDLVKD--KEELLPLLEELSE------------LMDFAEIVPISALKGDNVDELLDVIAKYL  170 (292)
T ss_pred             CCCEEEEEECCcCCCC--HHHHHHHHHHHHh------------hCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence            7899999999999742  2333333333320            11236799999999999999999998765

>cd01895 EngA2 EngA2 subfamily

Probab=99.87  E-value=4.4e-21  Score=141.76  Aligned_cols=166  Identities=16%  Similarity=0.120  Sum_probs=102.3

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ++++|+++|++|+|||||+++|++.......+..+                                             
T Consensus         1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~---------------------------------------------   35 (174)
T cd01895           1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAG---------------------------------------------   35 (174)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCC---------------------------------------------
Confidence            36799999999999999999998754221110000                                             


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHH-----HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE-----LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                      .+.......+...+..+.+||+||..........     .......+..+|++++|+|++++.+..... .+... ..  
T Consensus        36 ~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~-~~--  111 (174)
T cd01895          36 TTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLI-LE--  111 (174)
T ss_pred             CccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHH-Hh--
Confidence            0000000111112345789999997644221111     122334567899999999999876654432 22222 22  


Q ss_pred             CCCCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          175 LASCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                       .+.|+++++||+|+.+.  ...+++.+.++...            ......+++++||+++.|++++++++.+.
T Consensus       112 -~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         112 -EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL------------PFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             -cCCCEEEEEeccccCCccHHHHHHHHHHHHhhc------------ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence             56899999999999764  23333333333221            01123689999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=3.1e-21  Score=158.12  Aligned_cols=164  Identities=21%  Similarity=0.205  Sum_probs=108.3

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .|+|+|.||||||||+|+|++....   ++.+|..+..+.+.                                      
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~--------------------------------------  202 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVR--------------------------------------  202 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEE--------------------------------------
Confidence            7999999999999999999876542   34445554444441                                      


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECC---ChhhhHhhHHHHHHHHhc-cC
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTS---DRERFEESKSELQCLLTD-ES  174 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~---~~~~~~~~~~~~~~~~~~-~~  174 (249)
                               + .....+.++|+||...-. ........++.++++++++++|+|++   +.+.+.....++.++... ..
T Consensus       203 ---------~-~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~  272 (390)
T PRK12298        203 ---------V-DDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPK  272 (390)
T ss_pred             ---------e-CCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhh
Confidence                     0 111248899999975422 22224456778899999999999998   344555554455554331 12


Q ss_pred             CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..++|+++|+||+|+...   +++.+.++.+..           ......+++++||+++.|+++++++|.+.+
T Consensus       273 L~~kP~IlVlNKiDl~~~---~el~~~l~~l~~-----------~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L  332 (390)
T PRK12298        273 LAEKPRWLVFNKIDLLDE---EEAEERAKAIVE-----------ALGWEGPVYLISAASGLGVKELCWDLMTFI  332 (390)
T ss_pred             hcCCCEEEEEeCCccCCh---HHHHHHHHHHHH-----------HhCCCCCEEEEECCCCcCHHHHHHHHHHHh
Confidence            246899999999999753   222222222210           000113689999999999999999998765

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.87  E-value=6.5e-21  Score=142.91  Aligned_cols=182  Identities=20%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      +|+|+|.+|||||||+|+|++.......+.....             .+..+...   ..              ..+.+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~-------------~~~~~~~~---~~--------------~~~~~~   50 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE-------------TFLDVLKE---ER--------------ERGITI   50 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec-------------ccccCCHH---HH--------------HcCCCe
Confidence            4899999999999999999987655322211100             00000000   00              000011


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                      ......+......+.+||+||+..+.....      ..+..+|++++|+|+++....... ..+... ..   .+.|+++
T Consensus        51 ~~~~~~~~~~~~~~~liDtpG~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~-~~---~~~~i~i  119 (189)
T cd00881          51 KSGVATFEWPDRRVNFIDTPGHEDFSSEVI------RGLSVSDGAILVVDANEGVQPQTR-EHLRIA-RE---GGLPIIV  119 (189)
T ss_pred             ecceEEEeeCCEEEEEEeCCCcHHHHHHHH------HHHHhcCEEEEEEECCCCCcHHHH-HHHHHH-HH---CCCCeEE
Confidence            111111222245789999999887665544      556789999999999886544322 122222 22   6899999


Q ss_pred             EEecCCCCCCCCHHHH----HHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          183 LGNKIDKHGAASEEEI----RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       183 v~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++||+|+..+......    .+.++........   ..........+++++||++|.|+++++.+|.+.+
T Consensus       120 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         120 AINKIDRVGEEDLEEVLREIKELLGLIGFISTK---EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             EEECCCCcchhcHHHHHHHHHHHHccccccchh---hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            9999999864333332    2333322100000   0000112357899999999999999999998765

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK11058 GTPase HflX; Provisional

Probab=99.87  E-value=6.7e-21  Score=157.92  Aligned_cols=158  Identities=22%  Similarity=0.255  Sum_probs=104.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++|+++|.+|||||||+|+|++..+.   .+.+|..+....+                                      
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i--------------------------------------  239 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRI--------------------------------------  239 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEE--------------------------------------
Confidence            68999999999999999999876543   1223333222221                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhh--hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                               .+.+ ...+.+|||+|..+.  ....+.+...+..+..+|++++|+|++++..+..+.. +..++......
T Consensus       240 ---------~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~  308 (426)
T PRK11058        240 ---------DVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEA-VNTVLEEIDAH  308 (426)
T ss_pred             ---------EeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHH-HHHHHHHhccC
Confidence                     0111 125679999997442  3334445555677889999999999999877766532 22333333335


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCcee-EEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE-LFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+++|+||+|+..... .....  ....                 .+ ++++||++|.|+++++++|.+.+
T Consensus       309 ~~pvIiV~NKiDL~~~~~-~~~~~--~~~~-----------------~~~~v~ISAktG~GIdeL~e~I~~~l  361 (426)
T PRK11058        309 EIPTLLVMNKIDMLDDFE-PRIDR--DEEN-----------------KPIRVWLSAQTGAGIPLLFQALTERL  361 (426)
T ss_pred             CCCEEEEEEcccCCCchh-HHHHH--HhcC-----------------CCceEEEeCCCCCCHHHHHHHHHHHh
Confidence            799999999999975311 11111  0011                 22 58899999999999999998765

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.87  E-value=1.9e-21  Score=144.17  Aligned_cols=121  Identities=21%  Similarity=0.145  Sum_probs=79.4

Q ss_pred             ceEEEEEeCCCchhhhhh-HHHHhhhhccccccceEEEEEECCCh------hhhHhhHHHHHHHHhccC------CCCCc
Q psy871          113 DAIVFLVDTSDRERFEES-KSELQCLLTDESLASSIVFLVDTSDR------ERFEESKSELQCLLTDES------LASCP  179 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~-~~~~~~~~~~~~~~d~ii~v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~p  179 (249)
                      ...+.+||+||....... ......+...+..+|++++|+|+++.      .++.....+..++.....      ..+.|
T Consensus        43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  122 (176)
T cd01881          43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP  122 (176)
T ss_pred             CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence            345789999997432211 11222445567789999999999987      466665555555543221      14799


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+.......+... ....              .....+++++||+++.|++++++++.+.+
T Consensus       123 ~ivv~NK~Dl~~~~~~~~~~~-~~~~--------------~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~  176 (176)
T cd01881         123 VIYVLNKIDLDDAEELEEELV-RELA--------------LEEGAEVVPISAKTEEGLDELIRAIYELL  176 (176)
T ss_pred             eEEEEEchhcCchhHHHHHHH-HHHh--------------cCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence            999999999976422222210 1111              11236799999999999999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.87  E-value=9.8e-22  Score=147.18  Aligned_cols=119  Identities=20%  Similarity=0.242  Sum_probs=79.4

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      .....+.++|+||+..|.....      ..+..+|++++|+|+.+....+.. +.+... ..   .++|+++++||+|+.
T Consensus        67 ~~~~~i~~iDtPG~~~f~~~~~------~~~~~~D~ailvVda~~g~~~~~~-~~l~~~-~~---~~~p~ivvlNK~D~~  135 (188)
T PF00009_consen   67 ENNRKITLIDTPGHEDFIKEMI------RGLRQADIAILVVDANDGIQPQTE-EHLKIL-RE---LGIPIIVVLNKMDLI  135 (188)
T ss_dssp             ESSEEEEEEEESSSHHHHHHHH------HHHTTSSEEEEEEETTTBSTHHHH-HHHHHH-HH---TT-SEEEEEETCTSS
T ss_pred             ccccceeecccccccceeeccc------ceecccccceeeeecccccccccc-cccccc-cc---cccceEEeeeeccch
Confidence            5667899999999988766655      567899999999999976333322 122222 22   789999999999998


Q ss_pred             CCCCHHHHHHHhhhcccccCcccCCCCCCCC-CceeEEEeeeccccchHHHHHHHhhhc
Q psy871          191 GAASEEEIRQYFGLYGLTTGKVATPRSEMSG-RPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .....+...+....+.....        ... ..++++++||++|.|+++|++.|.+++
T Consensus       136 ~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  136 EKELEEIIEEIKEKLLKEYG--------ENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--------STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             hhhHHHHHHHHHHHhccccc--------cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            32111112222211100000        111 248999999999999999999998876

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04163 Era Era subfamily

Probab=99.87  E-value=8.8e-21  Score=139.12  Aligned_cols=165  Identities=24%  Similarity=0.333  Sum_probs=103.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +..+|+++|++|||||||+|++++.......+....                                            
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~--------------------------------------------   37 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQT--------------------------------------------   37 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCc--------------------------------------------
Confidence            567999999999999999999987543211110000                                            


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHH--HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE--LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                       +.......+......+.+|||||..........  .......+..+|++++|+|++++..  ....++.+.+..   .+
T Consensus        38 -~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~  111 (168)
T cd04163          38 -TRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG--EGDEFILELLKK---SK  111 (168)
T ss_pred             -eeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC--chHHHHHHHHHH---hC
Confidence             000111111222456889999997654433221  1223355788999999999998722  211233333322   46


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+...  .+++.+..+.+.            ...+..+++++|++++.|+++++++|.+++
T Consensus       112 ~~~iiv~nK~Dl~~~--~~~~~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~  168 (168)
T cd04163         112 TPVILVLNKIDLVKD--KEDLLPLLEKLK------------ELGPFAEIFPISALKGENVDELLEEIVKYL  168 (168)
T ss_pred             CCEEEEEEchhcccc--HHHHHHHHHHHH------------hccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence            899999999999742  233333333332            111236899999999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.87  E-value=9e-21  Score=137.82  Aligned_cols=153  Identities=18%  Similarity=0.113  Sum_probs=101.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      .+|+++|++|+|||||++++++.......+..+....                                           
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~-------------------------------------------   38 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRD-------------------------------------------   38 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccc-------------------------------------------
Confidence            4799999999999999999987653321111111000                                           


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHH--HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKS--ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~--~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                        .....+...+..+.+|||||...+.....  ........+..+|++++|+|++++.+......+ ..      ..+.|
T Consensus        39 --~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~------~~~~~  109 (157)
T cd04164          39 --VIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEIL-EL------PADKP  109 (157)
T ss_pred             --eEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHH-Hh------hcCCC
Confidence              00011111234688999999766543321  122344566789999999999987666554321 11      26799


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+.+....     ...                 ....+++++||+++.|+++++++|.+.+
T Consensus       110 vi~v~nK~D~~~~~~~-----~~~-----------------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         110 IIVVLNKSDLLPDSEL-----LSL-----------------LAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEEEEEchhcCCcccc-----ccc-----------------cCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            9999999999764222     111                 1236899999999999999999998865

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK04213 GTP-binding protein; Provisional

Probab=99.86  E-value=1.1e-20  Score=143.20  Aligned_cols=167  Identities=17%  Similarity=0.156  Sum_probs=95.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+.++|+++|++|||||||+|+|++..+... ...+..                                          
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~t------------------------------------------   43 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVG-KRPGVT------------------------------------------   43 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccC-CCCcee------------------------------------------
Confidence            3567999999999999999999987653311 000100                                          


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhh--------hhHHHHhhhh-ccccccceEEEEEECCChhhhH---------
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFE--------ESKSELQCLL-TDESLASSIVFLVDTSDRERFE---------  160 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~--------~~~~~~~~~~-~~~~~~d~ii~v~d~~~~~~~~---------  160 (249)
                         .......+    ..+.+|||||.....        ..+..+..++ .....++++++|+|.++...+.         
T Consensus        44 ---~~~~~~~~----~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~  116 (201)
T PRK04213         44 ---RKPNHYDW----GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEI  116 (201)
T ss_pred             ---eCceEEee----cceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCc
Confidence               00000000    147899999942211        1122222222 2445678999999987532210         


Q ss_pred             hhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871          161 ESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG  240 (249)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  240 (249)
                      .....+...+..   .++|+++|+||+|+.+.. .+...++.+......        .......+++++||++| |++++
T Consensus       117 ~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~SA~~g-gi~~l  183 (201)
T PRK04213        117 PIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYP--------PWRQWQDIIAPISAKKG-GIEEL  183 (201)
T ss_pred             HHHHHHHHHHHH---cCCCeEEEEECccccCcH-HHHHHHHHHHhcCCc--------cccccCCcEEEEecccC-CHHHH
Confidence            011122333322   579999999999997542 223333333322000        00001136899999999 99999


Q ss_pred             HHHHhhhc
Q psy871          241 FRWLANYI  248 (249)
Q Consensus       241 ~~~l~~~i  248 (249)
                      +++|.+.+
T Consensus       184 ~~~l~~~~  191 (201)
T PRK04213        184 KEAIRKRL  191 (201)
T ss_pred             HHHHHHhh
Confidence            99998865

>cd01894 EngA1 EngA1 subfamily

Probab=99.86  E-value=5.3e-21  Score=139.10  Aligned_cols=112  Identities=21%  Similarity=0.176  Sum_probs=76.4

Q ss_pred             ceEEEEEeCCCchhhhh-hHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          113 DAIVFLVDTSDRERFEE-SKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~-~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      +..+.+|||||+..+.. ... ........+..+|++++|+|+.+..+....  .+.+++..   .+.|+++|+||+|+.
T Consensus        44 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~  118 (157)
T cd01894          44 GREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNI  118 (157)
T ss_pred             CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccC
Confidence            35688999999887654 111 222334567889999999999875444332  33344333   469999999999997


Q ss_pred             CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          191 GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ....   ....+....                ..+++++||++|.|+++++++|.+++
T Consensus       119 ~~~~---~~~~~~~~~----------------~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         119 KEED---EAAEFYSLG----------------FGEPIPISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             ChHH---HHHHHHhcC----------------CCCeEEEecccCCCHHHHHHHHHhhC
Confidence            6421   122222222                12689999999999999999998864

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.86  E-value=1.3e-20  Score=141.54  Aligned_cols=124  Identities=17%  Similarity=0.229  Sum_probs=93.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|.+|+|||||++++..+.+. .+.||++.......       +.+. ..                         
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~-------~~~~-~~-------------------------   47 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKH-------HTYK-EG-------------------------   47 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEE-------EEEc-CC-------------------------
Confidence            48999999999999999999988765 45566653322110       0000 00                         


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-------
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE-------  173 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-------  173 (249)
                             ...+....+.+||++|++++...+.      .++..+|++++|+|++++.+|..+..|+.++....       
T Consensus        48 -------~~~~~~~~l~IwDtaG~e~~~~l~~------~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~  114 (202)
T cd04102          48 -------TPEEKTFFVELWDVGGSESVKSTRA------VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLL  114 (202)
T ss_pred             -------CCCCcEEEEEEEecCCchhHHHHHH------HHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccc
Confidence                   0112335688999999999988877      67889999999999999999999998988886531       


Q ss_pred             -----------CCCCCcEEEEEecCCCCC
Q psy871          174 -----------SLASCPVLILGNKIDKHG  191 (249)
Q Consensus       174 -----------~~~~~p~ivv~nK~Dl~~  191 (249)
                                 ...+.|+++|+||+|+.+
T Consensus       115 ~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102         115 VTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             cccccccccccCCCCceEEEEEECccchh
Confidence                       124689999999999965

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.86  E-value=1.7e-20  Score=141.25  Aligned_cols=107  Identities=21%  Similarity=0.227  Sum_probs=70.1

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      .....+.+|||||+++|.....      .+++.+|++++|+|+++.. +.....++.... .   .++|+++++||+|+.
T Consensus        62 ~~~~~~~l~DtpG~~~~~~~~~------~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~-~---~~~p~iiv~NK~Dl~  130 (194)
T cd01891          62 YKDTKINIVDTPGHADFGGEVE------RVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL-E---LGLKPIVVINKIDRP  130 (194)
T ss_pred             ECCEEEEEEECCCcHHHHHHHH------HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH-H---cCCCEEEEEECCCCC
Confidence            3456789999999998877666      5678999999999998742 222222333322 2   578999999999997


Q ss_pred             CCCCH---HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871          191 GAASE---EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG  238 (249)
Q Consensus       191 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  238 (249)
                      .....   +++.+.++....          ......++++++||++|.|++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~iv~~Sa~~g~~~~  171 (194)
T cd01891         131 DARPEEVVDEVFDLFIELGA----------TEEQLDFPVLYASAKNGWASL  171 (194)
T ss_pred             CCCHHHHHHHHHHHHHHhCC----------ccccCccCEEEeehhcccccc
Confidence            54222   233333322220          011124789999999997773

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.86  E-value=6.6e-21  Score=159.68  Aligned_cols=155  Identities=18%  Similarity=0.169  Sum_probs=103.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+.++|+++|++|||||||+|+|++.+.....+..+.+..                                        
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d----------------------------------------  252 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRD----------------------------------------  252 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccc----------------------------------------
Confidence            4557999999999999999999987654321111111111                                        


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHH--HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE--LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                           .....+...+..+.+|||||...+....+.  .......+..+|++++|+|++++.++.... .+..      ..
T Consensus       253 -----~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~-~l~~------~~  320 (449)
T PRK05291        253 -----VIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDE-ILEE------LK  320 (449)
T ss_pred             -----cEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHH-HHHh------cC
Confidence                 111111112345889999998754433221  233456788999999999999987666432 2222      26


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.+.....      ..                 ...+++++||++|.|+++++++|.+.+
T Consensus       321 ~~piiiV~NK~DL~~~~~~~------~~-----------------~~~~~i~iSAktg~GI~~L~~~L~~~l  369 (449)
T PRK05291        321 DKPVIVVLNKADLTGEIDLE------EE-----------------NGKPVIRISAKTGEGIDELREAIKELA  369 (449)
T ss_pred             CCCcEEEEEhhhccccchhh------hc-----------------cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence            78999999999997532211      11                 125789999999999999999998764

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.86  E-value=9.4e-21  Score=137.67  Aligned_cols=106  Identities=16%  Similarity=0.060  Sum_probs=74.6

Q ss_pred             EEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHH
Q psy871          118 LVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEE  197 (249)
Q Consensus       118 v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  197 (249)
                      +|||||......  +........+..+|++++|+|+++..++...  ++..+     ..++|+++++||+|+.+. ..+.
T Consensus        41 ~iDtpG~~~~~~--~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~--~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~  110 (158)
T PRK15467         41 DIDTPGEYFSHP--RWYHALITTLQDVDMLIYVHGANDPESRLPA--GLLDI-----GVSKRQIAVISKTDMPDA-DVAA  110 (158)
T ss_pred             cccCCccccCCH--HHHHHHHHHHhcCCEEEEEEeCCCcccccCH--HHHhc-----cCCCCeEEEEEccccCcc-cHHH
Confidence            599999643221  1222333457889999999999988765332  33332     146899999999998653 4555


Q ss_pred             HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          198 IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.++++...               ...+++++||++|+|++++++++.+.+
T Consensus       111 ~~~~~~~~~---------------~~~p~~~~Sa~~g~gi~~l~~~l~~~~  146 (158)
T PRK15467        111 TRKLLLETG---------------FEEPIFELNSHDPQSVQQLVDYLASLT  146 (158)
T ss_pred             HHHHHHHcC---------------CCCCEEEEECCCccCHHHHHHHHHHhc
Confidence            555555443               125899999999999999999998865

>KOG0097|consensus

Probab=99.86  E-value=1.4e-20  Score=127.41  Aligned_cols=157  Identities=20%  Similarity=0.241  Sum_probs=123.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCC-CCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVP-TLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +|-.++|+.|+|||+|+..++...+-.-.| |++...++-.                                       
T Consensus        12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtri---------------------------------------   52 (215)
T KOG0097|consen   12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI---------------------------------------   52 (215)
T ss_pred             EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeE---------------------------------------
Confidence            477899999999999999998766553333 4443333321                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            ....+....+.+|||.|+++|....+      ++|+.+...++|+|+++..++.++..|+.... ....++..+
T Consensus        53 ------ievsgqkiklqiwdtagqerfravtr------syyrgaagalmvyditrrstynhlsswl~dar-~ltnpnt~i  119 (215)
T KOG0097|consen   53 ------IEVSGQKIKLQIWDTAGQERFRAVTR------SYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-NLTNPNTVI  119 (215)
T ss_pred             ------EEecCcEEEEEEeecccHHHHHHHHH------HHhccccceeEEEEehhhhhhhhHHHHHhhhh-ccCCCceEE
Confidence                  11234456799999999999999999      89999999999999999999999888887753 334477889


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ++++||.|+..  +++-++..++.+.-+                 ..+.++||++|.|+++.|-.-++.
T Consensus       120 ~lignkadle~qrdv~yeeak~faeeng-----------------l~fle~saktg~nvedafle~akk  171 (215)
T KOG0097|consen  120 FLIGNKADLESQRDVTYEEAKEFAEENG-----------------LMFLEASAKTGQNVEDAFLETAKK  171 (215)
T ss_pred             EEecchhhhhhcccCcHHHHHHHHhhcC-----------------eEEEEecccccCcHHHHHHHHHHH
Confidence            99999999965  566788888777655                 889999999999999988765554

>KOG1489|consensus

Probab=99.86  E-value=5.2e-21  Score=146.76  Aligned_cols=161  Identities=21%  Similarity=0.257  Sum_probs=118.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .-+++||.|||||||||++|+.....   +.++|+.+..+++.                                     
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~-------------------------------------  239 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVN-------------------------------------  239 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceee-------------------------------------
Confidence            36899999999999999999887644   66677776666551                                     


Q ss_pred             ccceeceeccccccceEEEEEeCCCchh-hhhhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHh-cc
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLT-DE  173 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~-~~  173 (249)
                                ++. -..+.+-|.||... ....+..+..|+++++++..+++|+|.+.+   ..++.++..+.++-. +.
T Consensus       240 ----------ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek  308 (366)
T KOG1489|consen  240 ----------YDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK  308 (366)
T ss_pred             ----------ccc-cceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh
Confidence                      111 11288899999665 444566789999999999999999999998   666665544444422 44


Q ss_pred             CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      .+...|.++|+||+|+.+. ....++++.+...                ...++++||++++|++++++.|.+.
T Consensus       309 ~L~~rp~liVaNKiD~~ea-e~~~l~~L~~~lq----------------~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  309 GLADRPALIVANKIDLPEA-EKNLLSSLAKRLQ----------------NPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             hhccCceEEEEeccCchhH-HHHHHHHHHHHcC----------------CCcEEEeeeccccchHHHHHHHhhc
Confidence            5578999999999998642 1222345455443                1369999999999999999988764

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.86  E-value=3.5e-20  Score=134.68  Aligned_cols=157  Identities=18%  Similarity=0.177  Sum_probs=100.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ++||+++|++|||||||++++....+. ...++.+......                                       
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------   41 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTT---------------------------------------   41 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEE---------------------------------------
Confidence            369999999999999999999876632 1111111111000                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh-hhhHhhH-HHHHHHHhccCCCC
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR-ERFEESK-SELQCLLTDESLAS  177 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~  177 (249)
                            ...+.+....+.+||+||+..+.....      .....++.++.++|.... .++.... .+...+.... ..+
T Consensus        42 ------~~~~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~  108 (161)
T TIGR00231        42 ------VIEEDGKTYKFNLLDTAGQEDYRAIRR------LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESN  108 (161)
T ss_pred             ------EEEECCEEEEEEEEECCCcccchHHHH------HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccC
Confidence                  001111125688999999887766655      334456677777777665 4554433 3444443322 238


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA  245 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  245 (249)
                      .|+++++||+|+......++....+....                ..+++++||++|.|+++++++|.
T Consensus       109 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       109 VPIILVGNKIDLRDAKLKTHVAFLFAKLN----------------GEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             CcEEEEEEcccCCcchhhHHHHHHHhhcc----------------CCceEEeecCCCCCHHHHHHHhh
Confidence            89999999999976543444444444432                25699999999999999999875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.85  E-value=3.9e-20  Score=140.03  Aligned_cols=116  Identities=14%  Similarity=0.145  Sum_probs=73.8

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA  193 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  193 (249)
                      ..+.+|||||++.+...      ++..+..+|++++|+|++++.........+..+ ...  ...|+++++||+|+.+..
T Consensus        83 ~~i~~iDtPG~~~~~~~------~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~  153 (203)
T cd01888          83 RHVSFVDCPGHEILMAT------MLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEE  153 (203)
T ss_pred             cEEEEEECCChHHHHHH------HHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHH
Confidence            57899999998766443      336677899999999999742111112223222 111  235799999999997532


Q ss_pred             CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          194 SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...+..+.++....          .......+++++||++|.|+++++++|.+.+
T Consensus       154 ~~~~~~~~i~~~~~----------~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         154 QALENYEQIKKFVK----------GTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHHHHHHh----------ccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            22222222221110          0111236899999999999999999998865

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.85  E-value=2.5e-20  Score=155.38  Aligned_cols=158  Identities=17%  Similarity=0.125  Sum_probs=103.6

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      -.+.++|+++|+||||||||+|+|++.......+..+.+.                                        
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTr----------------------------------------  239 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTR----------------------------------------  239 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEE----------------------------------------
Confidence            3566899999999999999999998765332111111111                                        


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHH--HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE--LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                           ......+...+..+.+|||||...+....+.  ......+++.+|++++|+|++++.++...  ++..+.    .
T Consensus       240 -----d~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~  308 (442)
T TIGR00450       240 -----DVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLN----K  308 (442)
T ss_pred             -----EEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHh----h
Confidence                 1111111122345789999998765443321  13345677899999999999998776654  444432    2


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.|+++|+||+|+...    +...+.+...                 .+++++||++ .|++++++.|.+.+
T Consensus       309 ~~~piIlV~NK~Dl~~~----~~~~~~~~~~-----------------~~~~~vSak~-~gI~~~~~~L~~~i  359 (442)
T TIGR00450       309 SKKPFILVLNKIDLKIN----SLEFFVSSKV-----------------LNSSNLSAKQ-LKIKALVDLLTQKI  359 (442)
T ss_pred             CCCCEEEEEECccCCCc----chhhhhhhcC-----------------CceEEEEEec-CCHHHHHHHHHHHH
Confidence            57899999999999653    1222222222                 5689999998 68888888887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.85  E-value=2.5e-20  Score=135.75  Aligned_cols=111  Identities=19%  Similarity=0.158  Sum_probs=75.4

Q ss_pred             eEEEEEeCCCchhhhhhH---HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          114 AIVFLVDTSDRERFEESK---SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ..+.+|||||+..+....   .....++.. +.+|++++|+|++++.....   ++..+..    .++|+++|+||+|+.
T Consensus        43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi~v~d~~~~~~~~~---~~~~~~~----~~~~~iiv~NK~Dl~  114 (158)
T cd01879          43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIVNVVDATNLERNLY---LTLQLLE----LGLPVVVALNMIDEA  114 (158)
T ss_pred             eEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEEEEeeCCcchhHHH---HHHHHHH----cCCCEEEEEehhhhc
Confidence            468899999987665421   111222222 68999999999998654332   3333322    479999999999997


Q ss_pred             CCCC-HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          191 GAAS-EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       191 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      +... ..+...+.+...                 .+++++||++|.|+++++++|.+.++
T Consensus       115 ~~~~~~~~~~~~~~~~~-----------------~~~~~iSa~~~~~~~~l~~~l~~~~~  157 (158)
T cd01879         115 EKRGIKIDLDKLSELLG-----------------VPVVPTSARKGEGIDELKDAIAELAE  157 (158)
T ss_pred             ccccchhhHHHHHHhhC-----------------CCeEEEEccCCCCHHHHHHHHHHHhc
Confidence            6422 222333333333                 68999999999999999999988754

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.85  E-value=4.8e-20  Score=158.11  Aligned_cols=163  Identities=20%  Similarity=0.283  Sum_probs=106.8

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCC-CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV-PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      +..++++|+++|++++|||||+++|.+.++.... +.+..                                        
T Consensus        83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~----------------------------------------  122 (587)
T TIGR00487        83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQ----------------------------------------  122 (587)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceee----------------------------------------
Confidence            3467899999999999999999999876554211 00000                                        


Q ss_pred             CCcccceeceeccccc-cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           96 PTLHPTRRVWKDYFPA-VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~-~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                           ....  ..+.. ....+.+|||||++.|...+.      +++..+|++++|+|+++....+... .+... .   
T Consensus       123 -----~ig~--~~v~~~~~~~i~~iDTPGhe~F~~~r~------rga~~aDiaILVVda~dgv~~qT~e-~i~~~-~---  184 (587)
T TIGR00487       123 -----HIGA--YHVENEDGKMITFLDTPGHEAFTSMRA------RGAKVTDIVVLVVAADDGVMPQTIE-AISHA-K---  184 (587)
T ss_pred             -----cceE--EEEEECCCcEEEEEECCCCcchhhHHH------hhhccCCEEEEEEECCCCCCHhHHH-HHHHH-H---
Confidence                 0000  00111 112688999999999988776      6678899999999998743222221 22222 1   


Q ss_pred             CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ..++|+++++||+|+... ..+++.+.++..+...        .......+++++||++|+|++++++++..
T Consensus       185 ~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~--------~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       185 AANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVP--------EDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             HcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhH--------HhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            257999999999999753 4455555554332000        00112368999999999999999998854

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.84  E-value=3.2e-20  Score=137.96  Aligned_cols=152  Identities=20%  Similarity=0.211  Sum_probs=92.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCC-CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|+|||||+|+|++..+ ....++.+.+....                                     
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~-------------------------------------   58 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLIN-------------------------------------   58 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEE-------------------------------------
Confidence            6778999999999999999999987642 22222222111100                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhh-------hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHH
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERF-------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL  170 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~  170 (249)
                            .+.  .   +..+.+|||||....       .........++.....++++++|+|++++.+..+.  .+..++
T Consensus        59 ------~~~--~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~  125 (179)
T TIGR03598        59 ------FFE--V---NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWL  125 (179)
T ss_pred             ------EEE--e---CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHH
Confidence                  000  0   125889999995421       11111222334444457899999999885444433  222333


Q ss_pred             hccCCCCCcEEEEEecCCCCCCCCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871          171 TDESLASCPVLILGNKIDKHGAASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG  238 (249)
Q Consensus       171 ~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  238 (249)
                      ..   .+.|+++++||+|+......    +++++.++..               ...++++++||++|+|++
T Consensus       126 ~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---------------~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       126 RE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---------------ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             HH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---------------cCCCceEEEECCCCCCCC
Confidence            33   57999999999999753222    2222222221               123589999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01889 SelB_euk SelB subfamily

Probab=99.84  E-value=5.8e-20  Score=138.15  Aligned_cols=115  Identities=14%  Similarity=0.133  Sum_probs=74.0

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      ...+.+|||||+..+.      ..+......+|++++|+|+++......... +. +...   .+.|+++++||+|+...
T Consensus        67 ~~~~~i~DtpG~~~~~------~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~---~~~~~iiv~NK~Dl~~~  135 (192)
T cd01889          67 NLQITLVDCPGHASLI------RTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEI---LCKKLIVVLNKIDLIPE  135 (192)
T ss_pred             CceEEEEECCCcHHHH------HHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHH---cCCCEEEEEECcccCCH
Confidence            5578999999986432      233355677899999999988544333221 11 2222   36799999999999753


Q ss_pred             CCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          193 ASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       193 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...+    ++.+.+....          .......++++++||++|.|+++++++|.++|
T Consensus       136 ~~~~~~~~~~~~~l~~~~----------~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         136 EERERKIEKMKKKLQKTL----------EKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             HHHHHHHHHHHHHHHHHH----------HhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence            2222    2222221110          00111347899999999999999999998865

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.84  E-value=3.8e-20  Score=128.83  Aligned_cols=140  Identities=20%  Similarity=0.288  Sum_probs=101.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      ||+++|++|+|||||+++|.+.+..+..                                                  +.
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~K--------------------------------------------------Tq   32 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYKK--------------------------------------------------TQ   32 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcCc--------------------------------------------------cc
Confidence            8999999999999999999664433211                                                  00


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                           .+.   ..-.++||||  +|-+.......++.....+|.+++|.|++++.....-  .+...      .++|+|-
T Consensus        33 -----~i~---~~~~~IDTPG--EyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP--~fa~~------f~~pvIG   94 (143)
T PF10662_consen   33 -----AIE---YYDNTIDTPG--EYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP--GFASM------FNKPVIG   94 (143)
T ss_pred             -----eeE---ecccEEECCh--hheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc--hhhcc------cCCCEEE
Confidence                 000   1112489998  5666677777777888899999999999996443221  11121      5689999


Q ss_pred             EEecCCCC-CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          183 LGNKIDKH-GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       183 v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      |+||+|+. ++...+...++++..+                .-++|++|+.+|+|+++|.++|.+
T Consensus        95 VITK~Dl~~~~~~i~~a~~~L~~aG----------------~~~if~vS~~~~eGi~eL~~~L~~  143 (143)
T PF10662_consen   95 VITKIDLPSDDANIERAKKWLKNAG----------------VKEIFEVSAVTGEGIEELKDYLEE  143 (143)
T ss_pred             EEECccCccchhhHHHHHHHHHHcC----------------CCCeEEEECCCCcCHHHHHHHHhC
Confidence            99999998 4446667777777765                125799999999999999999863

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.84  E-value=1.6e-19  Score=130.18  Aligned_cols=112  Identities=25%  Similarity=0.309  Sum_probs=83.1

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      ...+.+||+||...+.....      .....+|++++|+|++++.++.....++..........+.|+++++||+|+...
T Consensus        44 ~~~~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~  117 (157)
T cd00882          44 KVKLQIWDTAGQERFRSLRR------LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE  117 (157)
T ss_pred             EEEEEEEecCChHHHHhHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence            45789999999887665544      556789999999999999888877665333333444578999999999999775


Q ss_pred             CCHHHHH--HHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          193 ASEEEIR--QYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       193 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ...+...  ......                ...+++++|++++.|+++++++|.+
T Consensus       118 ~~~~~~~~~~~~~~~----------------~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882         118 RVVSEEELAEQLAKE----------------LGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             cchHHHHHHHHHHhh----------------cCCcEEEEecCCCCChHHHHHHHhC
Confidence            4433321  111111                2378999999999999999999864

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.84  E-value=1.1e-19  Score=158.08  Aligned_cols=168  Identities=20%  Similarity=0.292  Sum_probs=108.8

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCC-CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV-PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      +..++++|+++|++++|||||+++|+...+.... +.+....+..                                   
T Consensus       240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~-----------------------------------  284 (742)
T CHL00189        240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAY-----------------------------------  284 (742)
T ss_pred             hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceE-----------------------------------
Confidence            4568899999999999999999999876543210 0000000000                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                            .-.+  .....+..+.+|||||++.|...+.      .++..+|++++|+|+++....+... .+..+ .   .
T Consensus       285 ------~v~~--~~~~~~~kItfiDTPGhe~F~~mr~------rg~~~aDiaILVVDA~dGv~~QT~E-~I~~~-k---~  345 (742)
T CHL00189        285 ------EVEF--EYKDENQKIVFLDTPGHEAFSSMRS------RGANVTDIAILIIAADDGVKPQTIE-AINYI-Q---A  345 (742)
T ss_pred             ------EEEE--EecCCceEEEEEECCcHHHHHHHHH------HHHHHCCEEEEEEECcCCCChhhHH-HHHHH-H---h
Confidence                  0000  0112346789999999999887776      6678899999999998743333221 22222 2   2


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      .++|+++++||+|+... ..+++.+.+.......        +.....++++++||++|.|+++++++|...
T Consensus       346 ~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~--------e~~g~~vpvv~VSAktG~GIdeLle~I~~l  408 (742)
T CHL00189        346 ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIP--------EKWGGDTPMIPISASQGTNIDKLLETILLL  408 (742)
T ss_pred             cCceEEEEEECCCcccc-CHHHHHHHHHHhccch--------HhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence            57999999999999763 3344444443321000        001124789999999999999999998754

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.84  E-value=1.6e-19  Score=135.08  Aligned_cols=164  Identities=18%  Similarity=0.182  Sum_probs=94.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +++|+++|++++|||||+++|+.....     .    +         +....+.......          ..+.  ..+.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~-----~----g---------~~~~~~~~~~d~~----------~~E~--~rg~   51 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAK-----K----G---------GAKFKKYDEIDKA----------PEEK--ARGI   51 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHh-----c----c---------cccccccccccCC----------hhhh--hcCc
Confidence            578999999999999999999764100     0    0         0000000000000          0000  1112


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-  179 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-  179 (249)
                      +.......++..+..+.++||||+..|.....      ..+..+|++++|+|+.....-+. .+.+. ++..   .++| 
T Consensus        52 Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~------~~~~~~D~~ilVvda~~g~~~~~-~~~~~-~~~~---~~~~~  120 (195)
T cd01884          52 TINTAHVEYETANRHYAHVDCPGHADYIKNMI------TGAAQMDGAILVVSATDGPMPQT-REHLL-LARQ---VGVPY  120 (195)
T ss_pred             cEEeeeeEecCCCeEEEEEECcCHHHHHHHHH------HHhhhCCEEEEEEECCCCCcHHH-HHHHH-HHHH---cCCCc
Confidence            22222233444566789999999876644443      66788999999999987432221 11222 2222   5676 


Q ss_pred             EEEEEecCCCCCCCC-H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccch
Q psy871          180 VLILGNKIDKHGAAS-E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGY  237 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  237 (249)
                      +++++||+|+..+.. .    +++.+.+..+.            +....++++++||++|.|.
T Consensus       121 iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g------------~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         121 IVVFLNKADMVDDEELLELVEMEVRELLSKYG------------FDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             EEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc------------ccccCCeEEEeeCccccCC
Confidence            779999999974211 1    23334444333            2223589999999999874

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PLN00023 GTP-binding protein; Provisional

Probab=99.83  E-value=1.3e-19  Score=142.59  Aligned_cols=151  Identities=21%  Similarity=0.296  Sum_probs=106.9

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +...+||+++|..|||||||++++.++.+. .+.||++......       .+.+ +....  +                
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik-------~I~~-~~~~~--~----------------   71 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVK-------HITY-GSPGS--S----------------   71 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEE-------EEEE-CCccc--c----------------
Confidence            567889999999999999999999988775 4567776543221       1111 10000  0                


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--  174 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--  174 (249)
                          .... .. -.+....+.+||++|+++|...+.      .++..++++|+|+|+++..+|..+..|+.++.....  
T Consensus        72 ----~~~i-k~-d~~k~v~LqIWDTAGqErfrsL~~------~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s  139 (334)
T PLN00023         72 ----SNSI-KG-DSERDFFVELWDVSGHERYKDCRS------LFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFS  139 (334)
T ss_pred             ----cccc-cc-cCCceEEEEEEECCCChhhhhhhH------HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccc
Confidence                0000 00 012235689999999999998888      678899999999999999999999988888865421  


Q ss_pred             ---------CCCCcEEEEEecCCCCCC--------CCHHHHHHHhhhcc
Q psy871          175 ---------LASCPVLILGNKIDKHGA--------ASEEEIRQYFGLYG  206 (249)
Q Consensus       175 ---------~~~~p~ivv~nK~Dl~~~--------~~~~~~~~~~~~~~  206 (249)
                               ...+|+++|+||+|+...        +..++.+++++..+
T Consensus       140 ~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g  188 (334)
T PLN00023        140 APLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQG  188 (334)
T ss_pred             cccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcC
Confidence                     125899999999999653        23567777776654

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.83  E-value=2e-19  Score=135.77  Aligned_cols=164  Identities=20%  Similarity=0.206  Sum_probs=100.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCC-CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ...++|+++|++|||||||+++|++..+ ....++.+......                                     
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~-------------------------------------   64 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLIN-------------------------------------   64 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEE-------------------------------------
Confidence            3557999999999999999999987642 22222222111000                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhh-------hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHH
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERF-------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL  170 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~  170 (249)
                                .+. .+..+.+|||||....       .........++......+++++|+|.+++......  ++.+.+
T Consensus        65 ----------~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l  131 (196)
T PRK00454         65 ----------FFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWL  131 (196)
T ss_pred             ----------EEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHH
Confidence                      000 1246899999995321       11112223344444556788899998875443321  233333


Q ss_pred             hccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          171 TDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       171 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..   .++|+++++||+|+.+....+...+.++...             .....+++++||+++.|++++++.|.+.+
T Consensus       132 ~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-------------~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        132 KE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-------------KFGDDEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             HH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-------------HhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence            32   5789999999999976433333332232221             00136899999999999999999998765

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.83  E-value=1.4e-19  Score=138.22  Aligned_cols=201  Identities=17%  Similarity=0.117  Sum_probs=107.3

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHH-Hhc-CCccc--ccCCc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHM-LKD-DRLAQ--PVPTL   98 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~-l~~-~~~~~--~~~~~   98 (249)
                      ||+++|++++|||||+++|+.+.+...   .+.....+        ......-..|+++.+.. ... .....  .++ .
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~---~~~~~~~~--------~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~-~   68 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNG---RGKARLNL--------FRHKHEVESGRTSSVSNEILGFDSDGEVVNYP-D   68 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCC---CCeEEeeh--------hhhhhhhhcCchhhhhhhhcccCCCCceecCC-C
Confidence            689999999999999999987655421   11000000        00000111244433222 111 10000  000 0


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccc--cccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE--SLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      ..+...+...++..+..+.++|+||++.|.....      ..+  ..+|++++|+|+.+...-.+.  .+..++..   .
T Consensus        69 ~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~------~~~~~~~~D~~llVvda~~g~~~~d~--~~l~~l~~---~  137 (224)
T cd04165          69 NHLSESDIEICEKSSKLVTFIDLAGHERYLKTTL------FGLTGYAPDYAMLVVAANAGIIGMTK--EHLGLALA---L  137 (224)
T ss_pred             CccccccceeeeeCCcEEEEEECCCcHHHHHHHH------HhhcccCCCEEEEEEECCCCCcHHHH--HHHHHHHH---c
Confidence            0111111233445567899999999987754432      233  368999999999875432221  22233333   6


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcc------------cCC-CCCCCCCceeEEEeeeccccchHHHHHH
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKV------------ATP-RSEMSGRPIELFMCSVLMRQGYGDGFRW  243 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  243 (249)
                      ++|+++|+||+|+.++...++....+...-......            ... .........|+|.+||++|.|++++.+.
T Consensus       138 ~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~  217 (224)
T cd04165         138 NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF  217 (224)
T ss_pred             CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence            789999999999876422322222222211100000            000 0111223469999999999999999998


Q ss_pred             Hhh
Q psy871          244 LAN  246 (249)
Q Consensus       244 l~~  246 (249)
                      |..
T Consensus       218 L~~  220 (224)
T cd04165         218 LNL  220 (224)
T ss_pred             HHh
Confidence            864

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.83  E-value=2.6e-19  Score=135.31  Aligned_cols=174  Identities=21%  Similarity=0.258  Sum_probs=111.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      +.|+++|++|||||||+++|....+....++.......+.                                        
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~----------------------------------------   40 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFI----------------------------------------   40 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEE----------------------------------------
Confidence            4799999999999999999998765543333221111110                                        


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhcccccc-ceEEEEEECCCh-hhhHhhHHHHHHHHhccC--CCC
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLA-SSIVFLVDTSDR-ERFEESKSELQCLLTDES--LAS  177 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~-d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~  177 (249)
                           .........+.+||+||++++.....      .+++.+ +++|+|+|+++. ..+.....++..++....  ..+
T Consensus        41 -----~~~~~~~~~~~l~D~pG~~~~~~~~~------~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~  109 (203)
T cd04105          41 -----LNSEGKGKKFRLVDVPGHPKLRDKLL------ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNK  109 (203)
T ss_pred             -----eecCCCCceEEEEECCCCHHHHHHHH------HHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCC
Confidence                 00002235688999999998754444      556666 999999999997 667776666666554321  257


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhh----cccccCccc-------------------CCCCCCCCCceeEEEeeeccc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGL----YGLTTGKVA-------------------TPRSEMSGRPIELFMCSVLMR  234 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~-------------------~~~~~~~~~~~~~~~~Sa~~g  234 (249)
                      +|+++++||+|+......+.+.+.+..    +........                   .+.-......+.++++|++.+
T Consensus       110 ~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~  189 (203)
T cd04105         110 IPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVD  189 (203)
T ss_pred             CCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecC
Confidence            999999999999876555444333321    111111000                   000001124588999999987


Q ss_pred             c-chHHHHHHHhh
Q psy871          235 Q-GYGDGFRWLAN  246 (249)
Q Consensus       235 ~-gv~~l~~~l~~  246 (249)
                      . |++++.+|+.+
T Consensus       190 ~~~~~~~~~w~~~  202 (203)
T cd04105         190 GGGIDGWEEWIDE  202 (203)
T ss_pred             CCChHhHHHHHhh
Confidence            6 69999999875

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.83  E-value=1.8e-19  Score=155.36  Aligned_cols=111  Identities=17%  Similarity=0.174  Sum_probs=79.9

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      ....+.+|||||+..|.....      .++..+|++++|+|+++....+....+.. ...    .++|+++|+||+|+..
T Consensus        68 ~~~~l~liDTPG~~dF~~~v~------~~l~~aD~aILVvDat~g~~~qt~~~~~~-~~~----~~ipiIiViNKiDl~~  136 (595)
T TIGR01393        68 ETYVLNLIDTPGHVDFSYEVS------RSLAACEGALLLVDAAQGIEAQTLANVYL-ALE----NDLEIIPVINKIDLPS  136 (595)
T ss_pred             CEEEEEEEECCCcHHHHHHHH------HHHHhCCEEEEEecCCCCCCHhHHHHHHH-HHH----cCCCEEEEEECcCCCc
Confidence            346789999999999877666      66788999999999999766665543332 222    4789999999999875


Q ss_pred             CCCHHHH-HHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          192 AASEEEI-RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .. .++. .+..+.+.              ....+++++||++|.|+++++++|.+.+
T Consensus       137 ~~-~~~~~~el~~~lg--------------~~~~~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       137 AD-PERVKKEIEEVIG--------------LDASEAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             cC-HHHHHHHHHHHhC--------------CCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence            32 2222 22222222              0113589999999999999999998764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PTZ00099 rab6; Provisional

Probab=99.83  E-value=2.7e-19  Score=132.11  Aligned_cols=116  Identities=20%  Similarity=0.195  Sum_probs=95.4

Q ss_pred             ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871          109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID  188 (249)
Q Consensus       109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  188 (249)
                      +.+....+.+|||+|++++...+.      .+++.+|++++|+|++++.+|..+..|+..+.... ....|+++|+||+|
T Consensus        24 ~~~~~v~l~iwDt~G~e~~~~~~~------~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~D   96 (176)
T PTZ00099         24 LDEGPVRLQLWDTAGQERFRSLIP------SYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTD   96 (176)
T ss_pred             ECCEEEEEEEEECCChHHhhhccH------HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcc
Confidence            345567799999999999888777      67789999999999999999999988888876543 25789999999999


Q ss_pred             CCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          189 KHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       189 l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.+  ....++..+..+...                 ..+++|||++|.|++++|++|.+.+
T Consensus        97 L~~~~~v~~~e~~~~~~~~~-----------------~~~~e~SAk~g~nV~~lf~~l~~~l  141 (176)
T PTZ00099         97 LGDLRKVTYEEGMQKAQEYN-----------------TMFHETSAKAGHNIKVLFKKIAAKL  141 (176)
T ss_pred             cccccCCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            964  345666666555444                 6799999999999999999998764

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.82  E-value=2.2e-19  Score=157.53  Aligned_cols=164  Identities=21%  Similarity=0.289  Sum_probs=106.2

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +..|+++|+++|++++|||||+++|...++.... .                        .|.+                
T Consensus       286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e-~------------------------~GIT----------------  324 (787)
T PRK05306        286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE-A------------------------GGIT----------------  324 (787)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCccccc-c------------------------Ccee----------------
Confidence            3578899999999999999999999765543110 0                        0000                


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                         .+...  ..+...+..+.+|||||++.|...+.      +++..+|++++|+|+++....+... .+...    ...
T Consensus       325 ---~~iga--~~v~~~~~~ItfiDTPGhe~F~~m~~------rga~~aDiaILVVdAddGv~~qT~e-~i~~a----~~~  388 (787)
T PRK05306        325 ---QHIGA--YQVETNGGKITFLDTPGHEAFTAMRA------RGAQVTDIVVLVVAADDGVMPQTIE-AINHA----KAA  388 (787)
T ss_pred             ---eeccE--EEEEECCEEEEEEECCCCccchhHHH------hhhhhCCEEEEEEECCCCCCHhHHH-HHHHH----Hhc
Confidence               00000  00111235688999999999987776      6678899999999998842222211 22222    126


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ++|+++++||+|+... ..+.+...+......        .+.....++++++||++|.|+++++++|..
T Consensus       389 ~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~--------~e~~g~~vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        389 GVPIIVAINKIDKPGA-NPDRVKQELSEYGLV--------PEEWGGDTIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             CCcEEEEEECcccccc-CHHHHHHHHHHhccc--------HHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence            7999999999999653 334444433322100        001113478999999999999999999864

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.82  E-value=5.1e-20  Score=154.29  Aligned_cols=185  Identities=19%  Similarity=0.172  Sum_probs=103.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +++++|+++|++++|||||+++|+...-........    .+.     ...     ...|+.++-.++..+...+. ...
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~----~~~-----~~~-----~~~g~~~~~~~~~~D~~~~E-r~r   68 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIE----ELR-----EEA-----KEKGKESFKFAWVMDRLKEE-RER   68 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHH----HHH-----HHH-----HhcCCcccchhhhhccCHhH-hhc
Confidence            567899999999999999999998543321111000    000     000     00111111111111111110 023


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC-
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS-  177 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-  177 (249)
                      +.+.+.....++..+..+.+|||||++.|.....      ..+..+|++++|+|+++..++.....+...++..   .+ 
T Consensus        69 G~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~------~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~---~~~  139 (425)
T PRK12317         69 GVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMI------TGASQADAAVLVVAADDAGGVMPQTREHVFLART---LGI  139 (425)
T ss_pred             CccceeeeEEEecCCeEEEEEECCCcccchhhHh------hchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH---cCC
Confidence            3344444445555677899999999977654333      4467899999999998742222211122222222   23 


Q ss_pred             CcEEEEEecCCCCCCCC------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          178 CPVLILGNKIDKHGAAS------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      .|+++++||+|+.+...      .+++.++++...            .....++++++||++|.|+++
T Consensus       140 ~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g------------~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        140 NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVG------------YKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhC------------CCcCcceEEEeecccCCCccc
Confidence            46999999999975211      123333333332            112247899999999999987

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.82  E-value=3.4e-19  Score=136.79  Aligned_cols=176  Identities=23%  Similarity=0.196  Sum_probs=112.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ++..||+++|++|||||||+++|.+..+.. ..||++.......                                    
T Consensus         3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~------------------------------------   46 (219)
T COG1100           3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKT------------------------------------   46 (219)
T ss_pred             cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEE------------------------------------
Confidence            455899999999999999999999887773 3334332111110                                    


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHh-hHHHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE-SKSELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~  176 (249)
                            .   ........+.+|||+|++++...+.      .++..++++++|+|.+...++.. ...|..++... ...
T Consensus        47 ------~---~~~~~~~~~~~~Dt~gq~~~~~~~~------~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~-~~~  110 (219)
T COG1100          47 ------I---EPYRRNIKLQLWDTAGQEEYRSLRP------EYYRGANGILIVYDSTLRESSDELTEEWLEELREL-APD  110 (219)
T ss_pred             ------E---EeCCCEEEEEeecCCCHHHHHHHHH------HHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHh-CCC
Confidence                  0   0000145688999999999999988      88899999999999999555544 45455554433 224


Q ss_pred             CCcEEEEEecCCCCCCCCHHH-HHHHhh-hcccccCcccCCCCCCCCCceeEEEeeec--cccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEE-IRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVL--MRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~g~gv~~l~~~l~~~i  248 (249)
                      ..|+++++||+|+........ +.+... ...  .................++++|++  .+.++++++..+.+.+
T Consensus       111 ~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~  184 (219)
T COG1100         111 DVPILLVGNKIDLFDEQSSSEEILNQLNREVV--LLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL  184 (219)
T ss_pred             CceEEEEecccccccchhHHHHHHhhhhcCcc--hhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence            699999999999987422111 111100 000  000000000000011338999999  9999999998887654

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.82  E-value=2.9e-19  Score=153.89  Aligned_cols=109  Identities=18%  Similarity=0.238  Sum_probs=76.2

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHhccCCCCCc-EEEEEecCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLTDESLASCP-VLILGNKID  188 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D  188 (249)
                      +..+.+||+||++.|.....      .++..+|++++|+|+++.   .+...+    . ++..   .++| +++++||+|
T Consensus        49 ~~~v~~iDtPGhe~f~~~~~------~g~~~aD~aILVVDa~~G~~~qT~ehl----~-il~~---lgi~~iIVVlNK~D  114 (581)
T TIGR00475        49 DYRLGFIDVPGHEKFISNAI------AGGGGIDAALLVVDADEGVMTQTGEHL----A-VLDL---LGIPHTIVVITKAD  114 (581)
T ss_pred             CEEEEEEECCCHHHHHHHHH------hhhccCCEEEEEEECCCCCcHHHHHHH----H-HHHH---cCCCeEEEEEECCC
Confidence            35789999999988765544      677889999999999983   333322    2 2222   4677 999999999


Q ss_pred             CCCCCCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          189 KHGAASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       189 l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.+....+    ++.++++...            . ....+++++||++|.|++++++.|.+.+
T Consensus       115 lv~~~~~~~~~~ei~~~l~~~~------------~-~~~~~ii~vSA~tG~GI~eL~~~L~~l~  165 (581)
T TIGR00475       115 RVNEEEIKRTEMFMKQILNSYI------------F-LKNAKIFKTSAKTGQGIGELKKELKNLL  165 (581)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC------------C-CCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence            98643222    2333333221            0 0137899999999999999999887654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.82  E-value=5.6e-19  Score=155.72  Aligned_cols=159  Identities=19%  Similarity=0.136  Sum_probs=103.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      |+..+|+++|.||+|||||+|+|++.+.. ..+..+.+.+..                                      
T Consensus         1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~pGvTve~k--------------------------------------   41 (772)
T PRK09554          1 MKKLTIGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERK--------------------------------------   41 (772)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCceEeeE--------------------------------------
Confidence            45679999999999999999999875432 111122111111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhh------HHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEES------KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD  172 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~  172 (249)
                             ...+...+..+.++|+||..++...      .+......-....+|++++|+|+++.+....   +..++. +
T Consensus        42 -------~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~---l~~ql~-e  110 (772)
T PRK09554         42 -------EGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY---LTLQLL-E  110 (772)
T ss_pred             -------EEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHH---HHHHHH-H
Confidence                   1112334567899999998876532      1111111111247899999999998654332   223332 2


Q ss_pred             cCCCCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          173 ESLASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       173 ~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                         .++|+++++||+|+.+. ....+.++..+..+                 ++++++||++|.|++++.+.+.+.
T Consensus       111 ---~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG-----------------~pVvpiSA~~g~GIdeL~~~I~~~  166 (772)
T PRK09554        111 ---LGIPCIVALNMLDIAEKQNIRIDIDALSARLG-----------------CPVIPLVSTRGRGIEALKLAIDRH  166 (772)
T ss_pred             ---cCCCEEEEEEchhhhhccCcHHHHHHHHHHhC-----------------CCEEEEEeecCCCHHHHHHHHHHh
Confidence               57999999999998643 22334444444444                 789999999999999999988664

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.81  E-value=1.9e-19  Score=154.23  Aligned_cols=185  Identities=19%  Similarity=0.196  Sum_probs=103.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .|++.|+++|++++|||||+++|++..+....+  +.....+       .......+...                  +.
T Consensus         2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~--ggiTq~i-------G~~~v~~~~~~------------------~~   54 (590)
T TIGR00491         2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREA--GGITQHI-------GATEIPMDVIE------------------GI   54 (590)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccccccccC--Cceeccc-------CeeEeeecccc------------------cc
Confidence            468899999999999999999999876542211  0000011       00000000000                  00


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHhccCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLTDESL  175 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~  175 (249)
                       .........+......+.+|||||++.|...+.      .++..+|++++|+|+++.   .++..+    . ++..   
T Consensus        55 -~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~------~~~~~aD~~IlVvD~~~g~~~qt~e~i----~-~l~~---  119 (590)
T TIGR00491        55 -CGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRK------RGGALADLAILIVDINEGFKPQTQEAL----N-ILRM---  119 (590)
T ss_pred             -ccccccccccccccCcEEEEECCCcHhHHHHHH------HHHhhCCEEEEEEECCcCCCHhHHHHH----H-HHHH---
Confidence             000000000111112488999999999988776      567899999999999973   333322    2 2222   


Q ss_pred             CCCcEEEEEecCCCCCCCCH--------------HHHHH----Hhh----hcccccCcccC--CCCCCCCCceeEEEeee
Q psy871          176 ASCPVLILGNKIDKHGAASE--------------EEIRQ----YFG----LYGLTTGKVAT--PRSEMSGRPIELFMCSV  231 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~--------------~~~~~----~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa  231 (249)
                      .+.|+++++||+|+......              +++.+    .+.    .+. ..+....  ..........+++++||
T Consensus       120 ~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~-~~G~~~e~~~~i~~~~~~v~iVpVSA  198 (590)
T TIGR00491       120 YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLH-EEGFEAERFDRVTDFTKTVAIIPISA  198 (590)
T ss_pred             cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hcCccHHhhhhhhhcCCCceEEEeec
Confidence            57899999999999742110              11110    000    000 0000000  00001223589999999


Q ss_pred             ccccchHHHHHHHhh
Q psy871          232 LMRQGYGDGFRWLAN  246 (249)
Q Consensus       232 ~~g~gv~~l~~~l~~  246 (249)
                      ++|+|+++++.+|..
T Consensus       199 ~tGeGideLl~~l~~  213 (590)
T TIGR00491       199 ITGEGIPELLTMLAG  213 (590)
T ss_pred             CCCCChhHHHHHHHH
Confidence            999999999998854

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=1.6e-18  Score=123.26  Aligned_cols=170  Identities=24%  Similarity=0.191  Sum_probs=117.9

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +.+.+.||+|.|+.++||||+++++.........    ..                ..+..++.                
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~----~~----------------~~~~s~k~----------------   49 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITE----AD----------------ASSVSGKG----------------   49 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceee----cc----------------cccccccc----------------
Confidence            4577899999999999999999999654321000    00                00000000                


Q ss_pred             Ccccceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           97 TLHPTRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        97 ~~~~~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                      ....+..+--.... ..+..++++|||||++|.-.++      ...+.+..+++++|.+.+..+ +..+.+ .++...  
T Consensus        50 kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~------~l~~ga~gaivlVDss~~~~~-~a~~ii-~f~~~~--  119 (187)
T COG2229          50 KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE------ILSRGAVGAIVLVDSSRPITF-HAEEII-DFLTSR--  119 (187)
T ss_pred             ccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH------HHhCCcceEEEEEecCCCcch-HHHHHH-HHHhhc--
Confidence            00000000000111 2246799999999999998888      455779999999999999888 433333 333331  


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ..+|++|.+||.|+.+..+.+++.++++...               ...++++.+|..++|..+.+..+..+
T Consensus       120 ~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---------------~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         120 NPIPVVVAINKQDLFDALPPEKIREALKLEL---------------LSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---------------CCCceeeeecccchhHHHHHHHHHhh
Confidence            2299999999999999999999999998752               23899999999999999998887654

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=3.9e-19  Score=135.10  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=67.5

Q ss_pred             ccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC-CcEEEEEe
Q psy871          107 DYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS-CPVLILGN  185 (249)
Q Consensus       107 ~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~n  185 (249)
                      ..+...+..+.++||||++.|.....      ..+..+|++++|+|+++...-+..  ....++..   .+ .++++|+|
T Consensus        70 ~~~~~~~~~~~liDTpG~~~~~~~~~------~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~---~~~~~iIvviN  138 (208)
T cd04166          70 RYFSTPKRKFIIADTPGHEQYTRNMV------TGASTADLAILLVDARKGVLEQTR--RHSYILSL---LGIRHVVVAVN  138 (208)
T ss_pred             eEEecCCceEEEEECCcHHHHHHHHH------HhhhhCCEEEEEEECCCCccHhHH--HHHHHHHH---cCCCcEEEEEE
Confidence            33444566789999999877654333      456889999999999875322211  12222222   23 45788999


Q ss_pred             cCCCCCCCC--H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871          186 KIDKHGAAS--E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG  240 (249)
Q Consensus       186 K~Dl~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  240 (249)
                      |+|+.+...  .    .++.+.++.+.              ....+++++||++|.|+++.
T Consensus       139 K~D~~~~~~~~~~~i~~~~~~~~~~~~--------------~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         139 KMDLVDYSEEVFEEIVADYLAFAAKLG--------------IEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             chhcccCCHHHHHHHHHHHHHHHHHcC--------------CCCceEEEEeCCCCCCCccC
Confidence            999975311  1    12222222222              12367999999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.81  E-value=1e-19  Score=152.45  Aligned_cols=188  Identities=19%  Similarity=0.126  Sum_probs=104.1

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+++++|+++|++++|||||+++|+...-.......    ..+.          ......|+.++-.++......... 
T Consensus         3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~----~~~~----------~~~~~~g~~~~~~~~~~d~~~~e~-   67 (426)
T TIGR00483         3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTI----EKFE----------KEAQEKGKASFEFAWVMDRLKEER-   67 (426)
T ss_pred             CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHH----HHHH----------hHHHhcCCcccchhhhhccCHHHh-
Confidence            3567889999999999999999999853211000000    0000          000011222221122111111100 


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESL  175 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~  175 (249)
                      ..+.+.+.....+...+..+.+||+||++.|....      ...+..+|++++|+|+++..++.... .+...+....  
T Consensus        68 ~rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~------~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--  139 (426)
T TIGR00483        68 ERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNM------ITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--  139 (426)
T ss_pred             hcCceEEEEEEEEccCCeEEEEEECCCHHHHHHHH------HhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--
Confidence            12223333334445556789999999998764433      35678899999999999874332111 1111222221  


Q ss_pred             CCCcEEEEEecCCCCCCCC------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          176 ASCPVLILGNKIDKHGAAS------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      ...|+++++||+|+.+...      .+++.++++...            .....++++++||++|.|+++
T Consensus       140 ~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g------------~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       140 GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVG------------YNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcC------------CCcccceEEEeeccccccccc
Confidence            2357999999999975211      233344444332            122347899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0393|consensus

Probab=99.81  E-value=9.9e-20  Score=132.96  Aligned_cols=159  Identities=18%  Similarity=0.235  Sum_probs=117.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ++.+|++|||+-++|||+|+..++.+.+. .+.||+.-+...-                                     
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-------------------------------------   44 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-------------------------------------   44 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-------------------------------------
Confidence            45689999999999999999999888766 5556654111000                                     


Q ss_pred             cccceeceeccc-cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCC
Q psy871           98 LHPTRRVWKDYF-PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESL  175 (249)
Q Consensus        98 ~~~~~~~~~~~~-~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~  175 (249)
                               ... .+....+-+|||+|++.|..++.      -.|..+|+++++|++.++.+|.+.. .|+.++...  .
T Consensus        45 ---------v~V~dg~~v~L~LwDTAGqedYDrlRp------lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~--c  107 (198)
T KOG0393|consen   45 ---------VTVDDGKPVELGLWDTAGQEDYDRLRP------LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH--C  107 (198)
T ss_pred             ---------EEecCCCEEEEeeeecCCCcccccccc------cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh--C
Confidence                     111 13344588999999999987665      4788999999999999999999864 566666432  3


Q ss_pred             CCCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871          176 ASCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF  241 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  241 (249)
                      ++.|+++|++|.||.++              ++.++.....+.++                -..|++|||++..|+.++|
T Consensus       108 p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ig----------------a~~y~EcSa~tq~~v~~vF  171 (198)
T KOG0393|consen  108 PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIG----------------AVKYLECSALTQKGVKEVF  171 (198)
T ss_pred             CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhC----------------cceeeeehhhhhCCcHHHH
Confidence            88999999999999842              23344444444443                2789999999999999999


Q ss_pred             HHHhhh
Q psy871          242 RWLANY  247 (249)
Q Consensus       242 ~~l~~~  247 (249)
                      +...+.
T Consensus       172 ~~a~~~  177 (198)
T KOG0393|consen  172 DEAIRA  177 (198)
T ss_pred             HHHHHH
Confidence            876653

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.81  E-value=9.7e-19  Score=134.74  Aligned_cols=52  Identities=17%  Similarity=0.056  Sum_probs=40.2

Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      ..+|+++|+||+|+..   .++...+.+                   ..+++++||++|.|++++++.+.+.++
T Consensus       175 ~y~p~iiV~NK~Dl~~---~~~~~~~~~-------------------~~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         175 VYIPCLYVYNKIDLIS---IEELDLLAR-------------------QPNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             eEeeEEEEEECccCCC---HHHHHHHhc-------------------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence            3579999999999964   344443222                   135899999999999999999998875

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.81  E-value=5.2e-19  Score=143.33  Aligned_cols=160  Identities=19%  Similarity=0.141  Sum_probs=113.4

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      -.+-.+++++|.||||||||+|+|++.+...+..                                             -
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd---------------------------------------------I  248 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTD---------------------------------------------I  248 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecC---------------------------------------------C
Confidence            3667899999999999999999998766553222                                             3


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHH--HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS--ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~--~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                      +++|++.....+.-....+.++||+|........+  ........++.+|.+++|+|++.+.+-.+.  .+..    ...
T Consensus       249 ~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~--~~~~----~~~  322 (454)
T COG0486         249 AGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL--ALIE----LLP  322 (454)
T ss_pred             CCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH--HHHH----hcc
Confidence            44556666666666677899999999665444433  224445667889999999999996333322  1112    122


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.|+++|.||+|+.........    +..                ...+++.+||++|+|++.+.+.|.+.+
T Consensus       323 ~~~~~i~v~NK~DL~~~~~~~~~----~~~----------------~~~~~i~iSa~t~~Gl~~L~~~i~~~~  375 (454)
T COG0486         323 KKKPIIVVLNKADLVSKIELESE----KLA----------------NGDAIISISAKTGEGLDALREAIKQLF  375 (454)
T ss_pred             cCCCEEEEEechhcccccccchh----hcc----------------CCCceEEEEecCccCHHHHHHHHHHHH
Confidence            67999999999999875332222    111                124789999999999999999987754

>cd00880 Era_like Era (E

Probab=99.81  E-value=1.7e-18  Score=125.85  Aligned_cols=119  Identities=26%  Similarity=0.176  Sum_probs=81.4

Q ss_pred             ceEEEEEeCCCchhhhhhHHH-HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSE-LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      ...+.+||+||.......... .......+..+|++++|+|+++........ ++...    ...+.|+++|+||+|+..
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~  118 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLP  118 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCC
Confidence            457899999998765544331 122334567899999999999976665543 22222    226899999999999987


Q ss_pred             CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          192 AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .....+.........            ......+++++||+++.|++++++++.+.+
T Consensus       119 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~  163 (163)
T cd00880         119 EEEEEELLELRLLIL------------LLLLGLPVIAVSALTGEGIDELREALIEAL  163 (163)
T ss_pred             hhhHHHHHHHHHhhc------------ccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence            544444322111111            122457899999999999999999998754

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.80  E-value=4.7e-19  Score=137.69  Aligned_cols=162  Identities=25%  Similarity=0.299  Sum_probs=115.8

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      -|++||.||||||||+++++.....   ++++|+.+..+.+..                                     
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-------------------------------------  203 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-------------------------------------  203 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-------------------------------------
Confidence            5789999999999999999988754   788899888888721                                     


Q ss_pred             cceeceeccccccceEEEEEeCCCchh-hhhhHHHHhhhhccccccceEEEEEECCChh------hhHhhHHHHHHHHhc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKSELQCLLTDESLASSIVFLVDTSDRE------RFEESKSELQCLLTD  172 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~~~~~~~~~  172 (249)
                                 .....+++-|.||..+ .+.-......|+++++++-++++|+|.+..+      .+..+..++..+  .
T Consensus       204 -----------~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~  270 (369)
T COG0536         204 -----------DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--S  270 (369)
T ss_pred             -----------cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHh--h
Confidence                       1233578889999654 4444556788999999999999999998643      234444444444  3


Q ss_pred             cCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       173 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..+.++|.++|+||+|+...  .++++...+.+..           ...+...++ +||.++.|++++...+.+.+
T Consensus       271 ~~L~~K~~ivv~NKiD~~~~--~e~~~~~~~~l~~-----------~~~~~~~~~-ISa~t~~g~~~L~~~~~~~l  332 (369)
T COG0536         271 PKLAEKPRIVVLNKIDLPLD--EEELEELKKALAE-----------ALGWEVFYL-ISALTREGLDELLRALAELL  332 (369)
T ss_pred             HHhccCceEEEEeccCCCcC--HHHHHHHHHHHHH-----------hcCCCccee-eehhcccCHHHHHHHHHHHH
Confidence            44578999999999996543  3334333333321           001112233 99999999999999888765

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=2e-18  Score=141.87  Aligned_cols=164  Identities=19%  Similarity=0.259  Sum_probs=114.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .|++.|+++|+...||||||..+.+.++....                         -.                   +.
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~E-------------------------aG-------------------GI   38 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGE-------------------------AG-------------------GI   38 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCcccccc-------------------------CC-------------------ce
Confidence            57899999999999999999999776544211                         00                   11


Q ss_pred             ccceeceeccccc-cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           99 HPTRRVWKDYFPA-VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        99 ~~~~~~~~~~~~~-~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                      ..+........+. ....+.+.|||||+.|..++.      +..+.+|+++||+|+++.-..+..+ -+... +   ..+
T Consensus        39 TQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRa------RGa~vtDIaILVVa~dDGv~pQTiE-AI~ha-k---~a~  107 (509)
T COG0532          39 TQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRA------RGASVTDIAILVVAADDGVMPQTIE-AINHA-K---AAG  107 (509)
T ss_pred             eeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHh------cCCccccEEEEEEEccCCcchhHHH-HHHHH-H---HCC
Confidence            1111111111110 235799999999999999999      8889999999999999954444332 12222 2   278


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      .|+++..||+|+++. ..+.+...++..+.        ..+...+...++++||++|+|+++|+..+.-
T Consensus       108 vP~iVAiNKiDk~~~-np~~v~~el~~~gl--------~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill  167 (509)
T COG0532         108 VPIVVAINKIDKPEA-NPDKVKQELQEYGL--------VPEEWGGDVIFVPVSAKTGEGIDELLELILL  167 (509)
T ss_pred             CCEEEEEecccCCCC-CHHHHHHHHHHcCC--------CHhhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence            999999999999864 55556555655442        1223345589999999999999999988753

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=1.7e-18  Score=143.82  Aligned_cols=117  Identities=15%  Similarity=0.141  Sum_probs=74.3

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      ...+.++|+||++.|.....      ..+..+|++++|+|+++........+.+..+ ..  ....|+++++||+|+.+.
T Consensus        79 ~~~i~liDtPGh~~f~~~~~------~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~  149 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATML------SGAALMDGALLVIAANEPCPQPQTKEHLMAL-EI--IGIKNIVIVQNKIDLVSK  149 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHH------HHHHHCCEEEEEEECCCCccccchHHHHHHH-HH--cCCCeEEEEEEccccCCH
Confidence            34689999999988765444      5667899999999999753111222233322 22  123578999999999763


Q ss_pred             CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ....+..+.+..+..          ......++++++||++|.|+++++++|.+.+
T Consensus       150 ~~~~~~~~~i~~~l~----------~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       150 EKALENYEEIKEFVK----------GTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHHHHHHHHHHhhhh----------hcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            222111111211110          0011247899999999999999999998754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.79  E-value=3.9e-18  Score=135.93  Aligned_cols=161  Identities=21%  Similarity=0.220  Sum_probs=115.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      ..-+.|+++|..|||||||+|+|++....   ..+.|..+....+.                                  
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~----------------------------------  235 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIE----------------------------------  235 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEE----------------------------------
Confidence            34568999999999999999999876533   34445554444441                                  


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchh--hhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRER--FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~--~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                                   + .....+.+-||-|+.+  -..+....+.++.....+|.+++|+|+++|.....+. ....++.+.
T Consensus       236 -------------l-~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el  300 (411)
T COG2262         236 -------------L-GDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLE-AVEDVLAEI  300 (411)
T ss_pred             -------------e-CCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHH-HHHHHHHHc
Confidence                         1 1134678888888553  3445667778888899999999999999995555544 455666666


Q ss_pred             CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +...+|+++|.||+|+..+..   ....+....                 -..+++||++|.|++.+.+.|.+.+
T Consensus       301 ~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~-----------------~~~v~iSA~~~~gl~~L~~~i~~~l  355 (411)
T COG2262         301 GADEIPIILVLNKIDLLEDEE---ILAELERGS-----------------PNPVFISAKTGEGLDLLRERIIELL  355 (411)
T ss_pred             CCCCCCEEEEEecccccCchh---hhhhhhhcC-----------------CCeEEEEeccCcCHHHHHHHHHHHh
Confidence            667899999999999876422   111122111                 1489999999999999999988765

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.79  E-value=4e-18  Score=147.19  Aligned_cols=112  Identities=18%  Similarity=0.183  Sum_probs=79.1

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      +.+..+.+|||||+..|.....      .++..+|++++|+|+++....+....+. ... .   .++|+++|+||+|+.
T Consensus        71 g~~~~lnLiDTPGh~dF~~~v~------~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~-~---~~lpiIvViNKiDl~  139 (600)
T PRK05433         71 GETYILNLIDTPGHVDFSYEVS------RSLAACEGALLVVDASQGVEAQTLANVY-LAL-E---NDLEIIPVLNKIDLP  139 (600)
T ss_pred             CCcEEEEEEECCCcHHHHHHHH------HHHHHCCEEEEEEECCCCCCHHHHHHHH-HHH-H---CCCCEEEEEECCCCC
Confidence            3456789999999999877666      5677899999999999865555443222 222 2   578999999999986


Q ss_pred             CCCCHHHH-HHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          191 GAASEEEI-RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ... .++. .++.+.+.              .....++++||++|.|+++++++|.+.+
T Consensus       140 ~a~-~~~v~~ei~~~lg--------------~~~~~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        140 AAD-PERVKQEIEDVIG--------------IDASDAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             ccc-HHHHHHHHHHHhC--------------CCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence            542 2222 22222222              1113589999999999999999998754

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=9.6e-18  Score=122.05  Aligned_cols=165  Identities=19%  Similarity=0.271  Sum_probs=102.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC-CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..+-|+++|.+|||||||+|+|++.. ...+.                        .                     ++
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS------------------------k---------------------tP   57 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTS------------------------K---------------------TP   57 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecC------------------------C---------------------CC
Confidence            34589999999999999999998743 12111                        1                     22


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhh---hhHH----HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFE---ESKS----ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~---~~~~----~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                      ++|+..  .+++- +..+.++|.||..-..   +..+    ....++.....-.++++++|+.++..-.+.  ++.+++.
T Consensus        58 GrTq~i--Nff~~-~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~  132 (200)
T COG0218          58 GRTQLI--NFFEV-DDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLL  132 (200)
T ss_pred             Ccccee--EEEEe-cCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHH
Confidence            222222  22222 2238899999954211   1222    334455555667888999999986544333  5555555


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCHHH-HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          172 DESLASCPVLILGNKIDKHGAASEEE-IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +   .++|+++++||+|.+....... +....+.+..           .......++..|+.++.|++++...|.+.+
T Consensus       133 ~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~-----------~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~  196 (200)
T COG0218         133 E---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK-----------PPPDDQWVVLFSSLKKKGIDELKAKILEWL  196 (200)
T ss_pred             H---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC-----------CCCccceEEEEecccccCHHHHHHHHHHHh
Confidence            5   7899999999999987533322 2222223321           001111288899999999999999988765

>KOG4252|consensus

Probab=99.78  E-value=1.6e-19  Score=127.17  Aligned_cols=159  Identities=19%  Similarity=0.173  Sum_probs=126.2

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +.+|++|+|--++||||++++++.+-+. .+.-|++...-.-                                      
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdfler--------------------------------------   60 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLER--------------------------------------   60 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhH--------------------------------------
Confidence            3469999999999999999999877654 2222332111110                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                           .  ..+...+....+||+.|+++|..+..      .+|+++.+.++||.-++..+|+....|..++..+  ...+
T Consensus        61 -----q--i~v~~Edvr~mlWdtagqeEfDaItk------Ayyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~I  125 (246)
T KOG4252|consen   61 -----Q--IKVLIEDVRSMLWDTAGQEEFDAITK------AYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE--TERI  125 (246)
T ss_pred             -----H--HHhhHHHHHHHHHHhccchhHHHHHH------HHhccccceEEEEecccHHHHHHHHHHHHHHHHH--hccC
Confidence                 0  11223355677899999999999988      8889999999999999999999999898888654  3689


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |.++|-||+|+++  ....++++..++...                 ..++.+|++...|+..+|.+|++.+
T Consensus       126 PtV~vqNKIDlveds~~~~~evE~lak~l~-----------------~RlyRtSvked~NV~~vF~YLaeK~  180 (246)
T KOG4252|consen  126 PTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-----------------KRLYRTSVKEDFNVMHVFAYLAEKL  180 (246)
T ss_pred             CeEEeeccchhhHhhhcchHHHHHHHHHhh-----------------hhhhhhhhhhhhhhHHHHHHHHHHH
Confidence            9999999999987  466778888888766                 7789999999999999999998753

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.78  E-value=3.6e-18  Score=146.93  Aligned_cols=185  Identities=18%  Similarity=0.228  Sum_probs=102.3

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ..|++.|+++|++|+|||||+++|++..+....+  +.....+       ...+...+..      .         .  .
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~--g~itq~i-------g~~~~~~~~~------~---------~--~   56 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEA--GGITQHI-------GATEVPIDVI------E---------K--I   56 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCC--CceEEee-------ceeecccccc------c---------c--c
Confidence            4688999999999999999999998664432111  0000001       0000000000      0         0  0


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhccC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDES  174 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~  174 (249)
                      .......+...+.  -..+.+|||||++.|...+.      ..+..+|++++|+|+++   +.++..+    .. +..  
T Consensus        57 ~~~~~~~~~~~~~--~~~i~~iDTPG~e~f~~~~~------~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~-~~~--  121 (586)
T PRK04004         57 AGPLKKPLPIKLK--IPGLLFIDTPGHEAFTNLRK------RGGALADIAILVVDINEGFQPQTIEAI----NI-LKR--  121 (586)
T ss_pred             cceeccccccccc--cCCEEEEECCChHHHHHHHH------HhHhhCCEEEEEEECCCCCCHhHHHHH----HH-HHH--
Confidence            0000000000010  01278999999999987766      56678999999999997   4444433    22 222  


Q ss_pred             CCCCcEEEEEecCCCCCCCCH--------------HHHH-----------HHhhhcccccCcccCCCCCCCCCceeEEEe
Q psy871          175 LASCPVLILGNKIDKHGAASE--------------EEIR-----------QYFGLYGLTTGKVATPRSEMSGRPIELFMC  229 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~--------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (249)
                       .++|+++++||+|+......              .++.           ..+...+...  +...........++++++
T Consensus       122 -~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~--e~~~~~~~~~~~v~ivpi  198 (586)
T PRK04004        122 -RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSA--DRFDRVKDFTKTVAIVPV  198 (586)
T ss_pred             -cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCCh--hhhhhhhccCCCceEeec
Confidence             57999999999998632110              1111           1111111000  000000011245889999


Q ss_pred             eeccccchHHHHHHHhh
Q psy871          230 SVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       230 Sa~~g~gv~~l~~~l~~  246 (249)
                      ||++|+|+++++..+..
T Consensus       199 SA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        199 SAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             cCCCCCChHHHHHHHHH
Confidence            99999999999887753

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.78  E-value=2e-18  Score=119.72  Aligned_cols=118  Identities=22%  Similarity=0.209  Sum_probs=74.8

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      ||+|+|++|||||||+++|.+.............                                        +  .+.
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~----------------------------------------~--~~~   38 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETS----------------------------------------E--ITI   38 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SST----------------------------------------T--SCE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccC----------------------------------------C--CcE
Confidence            7999999999999999999987655100000000                                        0  000


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-CCCCCcEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE-SLASCPVL  181 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~i  181 (249)
                      .............+.+||++|.+.+.....      ..+..+|++++|+|++++.++..+..++..+.... ...++|++
T Consensus        39 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~------~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~pii  112 (119)
T PF08477_consen   39 GVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ------FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPII  112 (119)
T ss_dssp             EEEEEEETTEEEEEEEEEESSSHCHHCTSH------HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEE
T ss_pred             EEEEEEecCCceEEEEEecCccceeccccc------chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEE
Confidence            000111222233489999999987766555      23678999999999999999988754433332211 13569999


Q ss_pred             EEEecCC
Q psy871          182 ILGNKID  188 (249)
Q Consensus       182 vv~nK~D  188 (249)
                      +|+||.|
T Consensus       113 lv~nK~D  119 (119)
T PF08477_consen  113 LVGNKSD  119 (119)
T ss_dssp             EEEE-TC
T ss_pred             EEEeccC
Confidence            9999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.78  E-value=6.2e-18  Score=140.02  Aligned_cols=178  Identities=15%  Similarity=0.140  Sum_probs=103.5

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+++++|+++|++++|||||+++|++.....                  ++....+      ...+....    .+.  .
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~------------------g~~~~~~------~~~~d~~~----~E~--~   58 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAER------------------GLNQAKD------YDSIDAAP----EEK--E   58 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhh------------------ccccccc------hhhhcCCH----HHH--h
Confidence            4677899999999999999999997421100                  0000000      00000000    000  1


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                      .+.+.......++..+..+.++||||++.|....      +..+..+|++++|+|+++...-+. .+.+.. +..   .+
T Consensus        59 rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~------~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~-~~~---~g  127 (394)
T PRK12736         59 RGITINTAHVEYETEKRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVAATDGPMPQT-REHILL-ARQ---VG  127 (394)
T ss_pred             cCccEEEEeeEecCCCcEEEEEECCCHHHHHHHH------HHHHhhCCEEEEEEECCCCCchhH-HHHHHH-HHH---cC
Confidence            1222223223344455678899999998765433      356678999999999987422222 112222 222   56


Q ss_pred             Cc-EEEEEecCCCCCCCCH-----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc--------chHHHHHH
Q psy871          178 CP-VLILGNKIDKHGAASE-----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ--------GYGDGFRW  243 (249)
Q Consensus       178 ~p-~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~--------gv~~l~~~  243 (249)
                      +| +++++||+|+.+....     +++.++++...            +.....+++++||++|.        +++++++.
T Consensus       128 ~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~------------~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~  195 (394)
T PRK12736        128 VPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD------------FPGDDIPVIRGSALKALEGDPKWEDAIMELMDA  195 (394)
T ss_pred             CCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC------------CCcCCccEEEeeccccccCCCcchhhHHHHHHH
Confidence            78 6789999999753221     23333333332            11234789999999983        67888888


Q ss_pred             Hhhhc
Q psy871          244 LANYI  248 (249)
Q Consensus       244 l~~~i  248 (249)
                      |.+.+
T Consensus       196 l~~~l  200 (394)
T PRK12736        196 VDEYI  200 (394)
T ss_pred             HHHhC
Confidence            77654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.77  E-value=1.7e-18  Score=132.50  Aligned_cols=118  Identities=22%  Similarity=0.257  Sum_probs=71.2

Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhh---hH---hhHHHHHHHHhccC
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRER---FE---ESKSELQCLLTDES  174 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~~---~~~~~~~~~~~~~~  174 (249)
                      +.......+...+..+.++||||+..|...      ....+..+|++++|+|+++...   +.   .....+. +...  
T Consensus        64 T~d~~~~~~~~~~~~i~liDtpG~~~~~~~------~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--  134 (219)
T cd01883          64 TIDVGLAKFETEKYRFTILDAPGHRDFVPN------MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--  134 (219)
T ss_pred             CeecceEEEeeCCeEEEEEECCChHHHHHH------HHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--
Confidence            333333444445678999999998766433      2356678999999999998421   11   1111222 2222  


Q ss_pred             CCCCcEEEEEecCCCCCC-CCH---HHHHHH----hhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          175 LASCPVLILGNKIDKHGA-ASE---EEIRQY----FGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~-~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      ....|+++++||+|+... ...   +++.+.    ++...            .....++++++||++|.|+++
T Consensus       135 ~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~------------~~~~~~~ii~iSA~tg~gi~~  195 (219)
T cd01883         135 LGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVG------------YNPKDVPFIPISGLTGDNLIE  195 (219)
T ss_pred             cCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcC------------CCcCCceEEEeecCcCCCCCc
Confidence            123689999999999742 122   222222    22222            122358899999999999863

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.77  E-value=1.9e-17  Score=127.81  Aligned_cols=128  Identities=16%  Similarity=0.195  Sum_probs=80.7

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      ...+..+.+|||||+..|.....      .+++.+|++++|+|+++....+ ...++. .+..   .++|+++++||+|+
T Consensus        60 ~~~~~~i~liDTPG~~~f~~~~~------~~l~~aD~~IlVvd~~~g~~~~-~~~~~~-~~~~---~~~P~iivvNK~D~  128 (237)
T cd04168          60 QWEDTKVNLIDTPGHMDFIAEVE------RSLSVLDGAILVISAVEGVQAQ-TRILWR-LLRK---LNIPTIIFVNKIDR  128 (237)
T ss_pred             EECCEEEEEEeCCCccchHHHHH------HHHHHhCeEEEEEeCCCCCCHH-HHHHHH-HHHH---cCCCEEEEEECccc
Confidence            34567899999999988766555      5678899999999999864332 222333 3332   57999999999999


Q ss_pred             CCCCCHHHHHHHhhhccccc--------------Ccc-------------------cCCCCCC--------------CCC
Q psy871          190 HGAASEEEIRQYFGLYGLTT--------------GKV-------------------ATPRSEM--------------SGR  222 (249)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~--------------~~~-------------------~~~~~~~--------------~~~  222 (249)
                      ......+-+.+....+...-              ...                   .....+.              ...
T Consensus       129 ~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~  208 (237)
T cd04168         129 AGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRK  208 (237)
T ss_pred             cCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence            76422222222222121100              000                   0000000              123


Q ss_pred             ceeEEEeeeccccchHHHHHHHhhhc
Q psy871          223 PIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       223 ~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      -+|++..||.++.|++.|++.+.+.+
T Consensus       209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~  234 (237)
T cd04168         209 VFPVYHGSALKGIGIEELLEGITKLF  234 (237)
T ss_pred             eEEEEEccccCCcCHHHHHHHHHHhc
Confidence            47899999999999999999998764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1423|consensus

Probab=99.77  E-value=1.5e-17  Score=127.27  Aligned_cols=177  Identities=21%  Similarity=0.191  Sum_probs=107.2

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      +-..+...|+|+|+||+|||||.|.+.+..++....                                            
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~--------------------------------------------  102 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR--------------------------------------------  102 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccc--------------------------------------------
Confidence            345778899999999999999999998876653222                                            


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHH------HHhhhhccccccceEEEEEECCChhhhHhh--HHHHH
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS------ELQCLLTDESLASSIVFLVDTSDRERFEES--KSELQ  167 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~  167 (249)
                       ...+++......+...+..++++||||...-...++      .....-..+..+|+++.|+|+++....-+.  ...+.
T Consensus       103 -K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~  181 (379)
T KOG1423|consen  103 -KVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLE  181 (379)
T ss_pred             -cccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHH
Confidence             222222222334455667899999999543333322      112233556789999999999963222221  11333


Q ss_pred             HHHhccCCCCCcEEEEEecCCCCCCCC-----------------HHHHHHHhhhcccccCcccCCCCCCC-CCceeEEEe
Q psy871          168 CLLTDESLASCPVLILGNKIDKHGAAS-----------------EEEIRQYFGLYGLTTGKVATPRSEMS-GRPIELFMC  229 (249)
Q Consensus       168 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  229 (249)
                      ++      ..+|-++|+||.|...+..                 .-++.+......   +.+. ...... .....+|.+
T Consensus       182 ~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p---~~~~-~~~~~gwshfe~vF~v  251 (379)
T KOG1423|consen  182 EY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVP---SDEK-WRTICGWSHFERVFMV  251 (379)
T ss_pred             HH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCC---cccc-cccccCcccceeEEEE
Confidence            33      6799999999999765200                 011111111100   0000 000011 113469999


Q ss_pred             eeccccchHHHHHHHhhh
Q psy871          230 SVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       230 Sa~~g~gv~~l~~~l~~~  247 (249)
                      ||++|+|++++.+||..+
T Consensus       252 SaL~G~GikdlkqyLmsq  269 (379)
T KOG1423|consen  252 SALYGEGIKDLKQYLMSQ  269 (379)
T ss_pred             ecccccCHHHHHHHHHhc
Confidence            999999999999999865

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.77  E-value=1.5e-17  Score=122.11  Aligned_cols=118  Identities=16%  Similarity=0.115  Sum_probs=72.6

Q ss_pred             EEEEEeCCCchhh-------hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecC
Q psy871          115 IVFLVDTSDRERF-------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI  187 (249)
Q Consensus       115 ~~~v~D~~g~~~~-------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  187 (249)
                      .+.++|+||....       .........+.......+++++++|..+.......  .+.+.+..   .+.|+++++||+
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~  120 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKA  120 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEch
Confidence            7889999995432       11122233344444567889999999875322221  22233332   468999999999


Q ss_pred             CCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       188 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+..................           ......+++++||+++.|+++++++|.+.+
T Consensus       121 D~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         121 DKLKKSELAKALKEIKKELK-----------LFEIDPPIILFSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             hcCChHHHHHHHHHHHHHHH-----------hccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence            99654333222222221110           011336899999999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.77  E-value=6.6e-18  Score=145.71  Aligned_cols=109  Identities=17%  Similarity=0.070  Sum_probs=73.5

Q ss_pred             eEEEEEeCCCchhhhhhHHH---HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSE---LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~---~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ..+.+|||||++++......   ...++. .+.+|++++|+|+++.+....   ...++.+    .++|+++++||+|+.
T Consensus        41 ~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~~aDvvI~VvDat~ler~l~---l~~ql~~----~~~PiIIVlNK~Dl~  112 (591)
T TIGR00437        41 EDIEIVDLPGIYSLTTFSLEEEVARDYLL-NEKPDLVVNVVDASNLERNLY---LTLQLLE----LGIPMILALNLVDEA  112 (591)
T ss_pred             eEEEEEECCCccccCccchHHHHHHHHHh-hcCCCEEEEEecCCcchhhHH---HHHHHHh----cCCCEEEEEehhHHH
Confidence            45789999998876554211   111111 246899999999998543221   2233322    579999999999986


Q ss_pred             CCC-CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          191 GAA-SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       191 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ++. ...+.+...+..+                 .+++++||++|+|++++++++.+.
T Consensus       113 ~~~~i~~d~~~L~~~lg-----------------~pvv~tSA~tg~Gi~eL~~~i~~~  153 (591)
T TIGR00437       113 EKKGIRIDEEKLEERLG-----------------VPVVPTSATEGRGIERLKDAIRKA  153 (591)
T ss_pred             HhCCChhhHHHHHHHcC-----------------CCEEEEECCCCCCHHHHHHHHHHH
Confidence            532 2223344444433                 789999999999999999999764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK09866 hypothetical protein; Provisional

Probab=99.76  E-value=7.4e-17  Score=135.98  Aligned_cols=118  Identities=19%  Similarity=0.203  Sum_probs=76.4

Q ss_pred             ceEEEEEeCCCchhh-hh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          113 DAIVFLVDTSDRERF-EE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~-~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ...++++||||...- .. ....+   ...+..+|++++|+|+.+..+..+.  .+.+.++..+ .+.|+++|+||+|+.
T Consensus       229 ~~QIIFVDTPGIhk~~~~~L~k~M---~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~-K~~PVILVVNKIDl~  302 (741)
T PRK09866        229 PGQLTLLDTPGPNEAGQPHLQKML---NQQLARASAVLAVLDYTQLKSISDE--EVREAILAVG-QSVPLYVLVNKFDQQ  302 (741)
T ss_pred             cCCEEEEECCCCCCccchHHHHHH---HHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcC-CCCCEEEEEEcccCC
Confidence            345899999997542 11 22222   2468899999999999885443332  3333333311 135999999999986


Q ss_pred             CCCC--HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          191 GAAS--EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       191 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      +...  .+.+.++.+....          ....+...++++||++|.|++++++.|..
T Consensus       303 dreeddkE~Lle~V~~~L~----------q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        303 DRNSDDADQVRALISGTLM----------KGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CcccchHHHHHHHHHHHHH----------hcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            5322  5566665543210          01123467999999999999999999876

>PRK12735 elongation factor Tu; Reviewed

Probab=99.76  E-value=2.2e-17  Score=136.87  Aligned_cols=179  Identities=15%  Similarity=0.121  Sum_probs=102.6

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      +-.+++++|+++|++++|||||+++|++.....                             |+.++........... .
T Consensus         7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~-----------------------------g~~~~~~~~~~d~~~~-E   56 (396)
T PRK12735          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKK-----------------------------GGGEAKAYDQIDNAPE-E   56 (396)
T ss_pred             CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhc-----------------------------CCcccchhhhccCChh-H
Confidence            445778899999999999999999998621100                             0000000000000000 0


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                      ...+.+.......++..+..+.++||||++.|.....      ..+..+|++++|+|+.+....+. .+.+... ..   
T Consensus        57 ~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~------~~~~~aD~~llVvda~~g~~~qt-~e~l~~~-~~---  125 (396)
T PRK12735         57 KARGITINTSHVEYETANRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVSAADGPMPQT-REHILLA-RQ---  125 (396)
T ss_pred             HhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHH------hhhccCCEEEEEEECCCCCchhH-HHHHHHH-HH---
Confidence            0111222222233344456789999999976644333      66778999999999987432221 2233222 22   


Q ss_pred             CCCcEE-EEEecCCCCCCCC-HH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc----------chHH
Q psy871          176 ASCPVL-ILGNKIDKHGAAS-EE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ----------GYGD  239 (249)
Q Consensus       176 ~~~p~i-vv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~~  239 (249)
                      .++|.+ +++||+|+.+... .+    ++..+++.+.            ......+++++||++|.          ++.+
T Consensus       126 ~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~------------~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~  193 (396)
T PRK12735        126 VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD------------FPGDDTPIIRGSALKALEGDDDEEWEAKILE  193 (396)
T ss_pred             cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC------------CCcCceeEEecchhccccCCCCCcccccHHH
Confidence            568865 5799999975211 11    3333343332            11124789999999984          6778


Q ss_pred             HHHHHhhh
Q psy871          240 GFRWLANY  247 (249)
Q Consensus       240 l~~~l~~~  247 (249)
                      +++.|.+.
T Consensus       194 Ll~~l~~~  201 (396)
T PRK12735        194 LMDAVDSY  201 (396)
T ss_pred             HHHHHHhc
Confidence            88877654

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.76  E-value=2.1e-17  Score=137.28  Aligned_cols=115  Identities=16%  Similarity=0.169  Sum_probs=72.7

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      ..+.+|||||++.|...      ++.....+|++++|+|++++. ..+. ...+..+ ..  ....|+++|+||+|+.+.
T Consensus        85 ~~i~liDtPG~~~f~~~------~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l-~~--~~i~~iiVVlNK~Dl~~~  154 (411)
T PRK04000         85 RRVSFVDAPGHETLMAT------MLSGAALMDGAILVIAANEPCPQPQT-KEHLMAL-DI--IGIKNIVIVQNKIDLVSK  154 (411)
T ss_pred             cEEEEEECCCHHHHHHH------HHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHH-HH--cCCCcEEEEEEeeccccc
Confidence            57899999999876543      335667789999999999753 1221 1122222 22  123478999999999764


Q ss_pred             CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ....+..+.+..+..          .......+++++||++|.|+++++++|.+.+
T Consensus       155 ~~~~~~~~~i~~~l~----------~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        155 ERALENYEQIKEFVK----------GTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             hhHHHHHHHHHHHhc----------cccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            222211111221110          0011237899999999999999999998754

>CHL00071 tufA elongation factor Tu

Probab=99.76  E-value=1.9e-17  Score=137.75  Aligned_cols=167  Identities=17%  Similarity=0.151  Sum_probs=96.6

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+++++|+++|++++|||||+++|++..........      .       .           .+.+     .... ...
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~------~-------~-----------~~~~-----d~~~-~e~   57 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA------K-------K-----------YDEI-----DSAP-EEK   57 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc------c-------c-----------cccc-----cCCh-hhh
Confidence            3577889999999999999999999864221100000      0       0           0000     0000 000


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      ..+.+.......++..+..+.++||||+..|.....      ..+..+|++++|+|+.....-+. .+.+. ++..   .
T Consensus        58 ~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~------~~~~~~D~~ilVvda~~g~~~qt-~~~~~-~~~~---~  126 (409)
T CHL00071         58 ARGITINTAHVEYETENRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVSAADGPMPQT-KEHIL-LAKQ---V  126 (409)
T ss_pred             cCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHH------HHHHhCCEEEEEEECCCCCcHHH-HHHHH-HHHH---c
Confidence            122233332333444556788999999876544443      56778999999999987432221 11222 2222   5


Q ss_pred             CCc-EEEEEecCCCCCCCC-H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc
Q psy871          177 SCP-VLILGNKIDKHGAAS-E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG  236 (249)
Q Consensus       177 ~~p-~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  236 (249)
                      ++| +++++||+|+.+... .    +++.++++...            .....++++++||++|.+
T Consensus       127 g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~------------~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        127 GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD------------FPGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC------------CCCCcceEEEcchhhccc
Confidence            688 778999999976321 1    23344444332            112247999999999863

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.76  E-value=2.2e-17  Score=142.83  Aligned_cols=113  Identities=16%  Similarity=0.152  Sum_probs=73.2

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecCCCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKIDKHGA  192 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~  192 (249)
                      ..+.+||+||++.|.....      ..+..+|++++|+|+++...-+.. +.+ .++..   .++| +++|+||+|+.++
T Consensus        51 ~~i~~IDtPGhe~fi~~m~------~g~~~~D~~lLVVda~eg~~~qT~-ehl-~il~~---lgi~~iIVVlNKiDlv~~  119 (614)
T PRK10512         51 RVLGFIDVPGHEKFLSNML------AGVGGIDHALLVVACDDGVMAQTR-EHL-AILQL---TGNPMLTVALTKADRVDE  119 (614)
T ss_pred             cEEEEEECCCHHHHHHHHH------HHhhcCCEEEEEEECCCCCcHHHH-HHH-HHHHH---cCCCeEEEEEECCccCCH
Confidence            3578999999988754443      667889999999999874222211 122 22222   4566 5799999999764


Q ss_pred             CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ...++..+.++....          .......+++++||++|.|++++++.|.+.
T Consensus       120 ~~~~~v~~ei~~~l~----------~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~  164 (614)
T PRK10512        120 ARIAEVRRQVKAVLR----------EYGFAEAKLFVTAATEGRGIDALREHLLQL  164 (614)
T ss_pred             HHHHHHHHHHHHHHH----------hcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence            233332222222110          011123689999999999999999999764

>PRK10218 GTP-binding protein; Provisional

Probab=99.75  E-value=3.9e-17  Score=140.48  Aligned_cols=179  Identities=16%  Similarity=0.141  Sum_probs=108.2

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC--CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR--LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      +-++|+++|++++|||||+++|+...  +.....+..    .+           ....                .. ...
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~----~v-----------~D~~----------------~~-E~e   51 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQE----RV-----------MDSN----------------DL-EKE   51 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccce----ee-----------eccc----------------cc-ccc
Confidence            45799999999999999999998622  211000000    00           0000                00 001


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                      .+.+.......+...+..+.+|||||+..|.....      ..+..+|++++|+|+++....+. ...+.....    .+
T Consensus        52 rGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~------~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~g  120 (607)
T PRK10218         52 RGITILAKNTAIKWNDYRINIVDTPGHADFGGEVE------RVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA----YG  120 (607)
T ss_pred             CceEEEEEEEEEecCCEEEEEEECCCcchhHHHHH------HHHHhCCEEEEEEecccCccHHH-HHHHHHHHH----cC
Confidence            11122222223344567899999999998877666      66789999999999987533322 223333322    67


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc----------chHHHHHHHhhh
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ----------GYGDGFRWLANY  247 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~  247 (249)
                      +|.++++||+|+......+.+.+....+.. .+.     . .....+|++++||++|.          |+..+++.+.++
T Consensus       121 ip~IVviNKiD~~~a~~~~vl~ei~~l~~~-l~~-----~-~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~  193 (607)
T PRK10218        121 LKPIVVINKVDRPGARPDWVVDQVFDLFVN-LDA-----T-DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH  193 (607)
T ss_pred             CCEEEEEECcCCCCCchhHHHHHHHHHHhc-cCc-----c-ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence            899999999999765443333333333211 000     0 11234789999999998          588888887765


Q ss_pred             c
Q psy871          248 I  248 (249)
Q Consensus       248 i  248 (249)
                      +
T Consensus       194 i  194 (607)
T PRK10218        194 V  194 (607)
T ss_pred             C
Confidence            4

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.75  E-value=3.2e-17  Score=141.13  Aligned_cols=118  Identities=17%  Similarity=0.193  Sum_probs=80.5

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      ...+..+.+|||||+..|.....      ..+..+|++++|+|+.+... .....++.....    .++|+++++||+|+
T Consensus        60 ~~~~~kinlIDTPGh~DF~~ev~------~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~----~~ip~IVviNKiD~  128 (594)
T TIGR01394        60 RYNGTKINIVDTPGHADFGGEVE------RVLGMVDGVLLLVDASEGPM-PQTRFVLKKALE----LGLKPIVVINKIDR  128 (594)
T ss_pred             EECCEEEEEEECCCHHHHHHHHH------HHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHH----CCCCEEEEEECCCC
Confidence            34467899999999998876665      66788999999999987432 222334444432    67899999999998


Q ss_pred             CCCCCH---HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc----------chHHHHHHHhhhc
Q psy871          190 HGAASE---EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ----------GYGDGFRWLANYI  248 (249)
Q Consensus       190 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~i  248 (249)
                      .+....   +++.+.+..+...          .....++++++||++|.          |++.+++.+.+.+
T Consensus       129 ~~a~~~~v~~ei~~l~~~~g~~----------~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       129 PSARPDEVVDEVFDLFAELGAD----------DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             CCcCHHHHHHHHHHHHHhhccc----------cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            764222   2333333322200          01123789999999996          7999999988764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=4e-17  Score=138.34  Aligned_cols=159  Identities=19%  Similarity=0.179  Sum_probs=104.6

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhh-hHH-HHhhhhccccc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKS-ELQCLLTDESL  143 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~-~~~~~~~~~~~  143 (249)
                      ..++.++|.+++|||+|++++.........+.++.++..........+..+.+|||||.+.... ... .......++..
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~  117 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT  117 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence            3579999999999999999999876543333444444433333333345688999999763211 111 12233456788


Q ss_pred             cceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCc
Q psy871          144 ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRP  223 (249)
Q Consensus       144 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (249)
                      +|++++|+|+++..++...  .+...+..   .++|+++|+||+|+....  .+..+... ..            .    
T Consensus       118 aD~il~VvD~~~~~s~~~~--~i~~~l~~---~~~piilV~NK~Dl~~~~--~~~~~~~~-~g------------~----  173 (472)
T PRK03003        118 ADAVLFVVDATVGATATDE--AVARVLRR---SGKPVILAANKVDDERGE--ADAAALWS-LG------------L----  173 (472)
T ss_pred             CCEEEEEEECCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCccc--hhhHHHHh-cC------------C----
Confidence            9999999999987655432  33444433   679999999999986431  11211111 11            0    


Q ss_pred             eeEEEeeeccccchHHHHHHHhhhc
Q psy871          224 IELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       224 ~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      -..+++||++|.|++++++++.+.+
T Consensus       174 ~~~~~iSA~~g~gi~eL~~~i~~~l  198 (472)
T PRK03003        174 GEPHPVSALHGRGVGDLLDAVLAAL  198 (472)
T ss_pred             CCeEEEEcCCCCCcHHHHHHHHhhc
Confidence            1347999999999999999998764

>KOG1532|consensus

Probab=99.75  E-value=2.7e-18  Score=129.40  Aligned_cols=223  Identities=20%  Similarity=0.220  Sum_probs=121.3

Q ss_pred             hcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCC----CCCcccceeeee-------e-eeceE--EEEcCCCC
Q psy871           12 LGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP----TLHPILGYLGLW-------T-KSGKL--LFLGLDNA   77 (249)
Q Consensus        12 ~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~----t~~~~~~~~~~~-------~-~~~~~--~~~g~~~~   77 (249)
                      ++..|...++..|+|+|+.|||||||++||...-.....|    ...+.+..+-++       + ....+  .+.-.|++
T Consensus        10 ~~a~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG   89 (366)
T KOG1532|consen   10 LEASGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG   89 (366)
T ss_pred             hcccccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence            3446778899999999999999999999998643221111    111111111000       0 11111  12245667


Q ss_pred             chhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhh---hhhHHHHhhhhccccccceEEEEEECC
Q psy871           78 GKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF---EESKSELQCLLTDESLASSIVFLVDTS  154 (249)
Q Consensus        78 Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~---~~~~~~~~~~~~~~~~~d~ii~v~d~~  154 (249)
                      |..+-+|.+... +       ..........  .......++||||+.+.   .+....+...+.. ...-+++||+|..
T Consensus        90 gI~TsLNLF~tk-~-------dqv~~~iek~--~~~~~~~liDTPGQIE~FtWSAsGsIIte~las-s~ptvv~YvvDt~  158 (366)
T KOG1532|consen   90 GIVTSLNLFATK-F-------DQVIELIEKR--AEEFDYVLIDTPGQIEAFTWSASGSIITETLAS-SFPTVVVYVVDTP  158 (366)
T ss_pred             chhhhHHHHHHH-H-------HHHHHHHHHh--hcccCEEEEcCCCceEEEEecCCccchHhhHhh-cCCeEEEEEecCC
Confidence            766665554421 0       0000111111  11234778899997642   2222212212211 3467888999985


Q ss_pred             C---hhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCc-ccCCC----------CCCC
Q psy871          155 D---RERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGK-VATPR----------SEMS  220 (249)
Q Consensus       155 ~---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~  220 (249)
                      +   +.+|-.---+-..++.   ....|++++.||+|+.+.....++...+..+....+. +....          -...
T Consensus       159 rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeF  235 (366)
T KOG1532|consen  159 RSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEF  235 (366)
T ss_pred             cCCCchhHHHHHHHHHHHHH---hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHH
Confidence            5   5555332112233333   3789999999999998865555554444433322221 11110          0111


Q ss_pred             CCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          221 GRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       221 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.+..+.|||.+|+|.+++|..+.+.+
T Consensus       236 Y~~lrtv~VSs~tG~G~ddf~~av~~~v  263 (366)
T KOG1532|consen  236 YRSLRTVGVSSVTGEGFDDFFTAVDESV  263 (366)
T ss_pred             HhhCceEEEecccCCcHHHHHHHHHHHH
Confidence            2558899999999999999999887654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.75  E-value=3e-17  Score=136.11  Aligned_cols=168  Identities=15%  Similarity=0.144  Sum_probs=94.8

Q ss_pred             cccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      +...+++++|+++|++++|||||+++|++....                  .++....+..      .+     ....+.
T Consensus         6 ~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~------------------~g~~~~~~~~------~~-----d~~~~E   56 (394)
T TIGR00485         6 FERTKPHVNIGTIGHVDHGKTTLTAAITTVLAK------------------EGGAAARAYD------QI-----DNAPEE   56 (394)
T ss_pred             hcCCCceEEEEEEeecCCCHHHHHHHHHhhHHH------------------hhcccccccc------cc-----cCCHHH
Confidence            344678889999999999999999999743100                  0000000000      00     000000


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                       ...+.+.......++..+..+.++||||++.|....      ......+|++++|+|+.+....+.. +.+..+ ..  
T Consensus        57 -~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~------~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~-~~--  125 (394)
T TIGR00485        57 -KARGITINTAHVEYETENRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVSATDGPMPQTR-EHILLA-RQ--  125 (394)
T ss_pred             -HhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHH------HHHHhhCCEEEEEEECCCCCcHHHH-HHHHHH-HH--
Confidence             011222222223344445678999999998765433      3566789999999999874322221 122322 22  


Q ss_pred             CCCCcEE-EEEecCCCCCCCC-H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc
Q psy871          175 LASCPVL-ILGNKIDKHGAAS-E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ  235 (249)
Q Consensus       175 ~~~~p~i-vv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  235 (249)
                       .++|.+ +++||+|+.+... .    +++.++++...            .....++++++||++|.
T Consensus       126 -~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       126 -VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD------------FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             -cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC------------CCccCccEEECcccccc
Confidence             467765 6899999975321 1    13333333332            11123789999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.75  E-value=4.1e-17  Score=126.06  Aligned_cols=182  Identities=20%  Similarity=0.235  Sum_probs=113.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCC---CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRL---AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..++++|+|++||||||+.|++..-   .++++|..+.++.+    ....+.++-.+.+|.-.           ....+.
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l----~Y~ga~IQild~Pgii~-----------gas~g~  128 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGML----EYKGAQIQLLDLPGIIE-----------GASSGR  128 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceE----eecCceEEEEcCccccc-----------CcccCC
Confidence            4899999999999999999998653   38889999999998    44444444434332210           001122


Q ss_pred             ccceeceeccccccceEEEEEeCCCchh-hhhhHHHH----------------------------------------hhh
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKSEL----------------------------------------QCL  137 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~----------------------------------------~~~  137 (249)
                      ++.+... ...+++|..+++.|...... ...+.+.+                                        ...
T Consensus       129 grG~~vl-sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~i  207 (365)
T COG1163         129 GRGRQVL-SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAI  207 (365)
T ss_pred             CCcceee-eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHH
Confidence            2222232 34577888888888764332 32333322                                        223


Q ss_pred             hccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCC
Q psy871          138 LTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRS  217 (249)
Q Consensus       138 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
                      ++.|.-.++.+++-.--..+.+.+       .+.. +...+|.++|.||+|+..   .+++....+.             
T Consensus       208 L~Ey~I~nA~V~Ir~dvTlDd~id-------~l~~-nrvY~p~l~v~NKiD~~~---~e~~~~l~~~-------------  263 (365)
T COG1163         208 LREYRIHNADVLIREDVTLDDLID-------ALEG-NRVYKPALYVVNKIDLPG---LEELERLARK-------------  263 (365)
T ss_pred             HHHhCcccceEEEecCCcHHHHHH-------HHhh-cceeeeeEEEEecccccC---HHHHHHHHhc-------------
Confidence            333444455555543333222222       1111 124789999999999986   4555554443             


Q ss_pred             CCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          218 EMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       218 ~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                            ..++++||+.+.|++++.+.|.+.++
T Consensus       264 ------~~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         264 ------PNSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             ------cceEEEecccCCCHHHHHHHHHHhhC
Confidence                  35899999999999999999988764

>PRK00049 elongation factor Tu; Reviewed

Probab=99.75  E-value=4.4e-17  Score=134.95  Aligned_cols=180  Identities=14%  Similarity=0.113  Sum_probs=103.0

Q ss_pred             cccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      ++..+++++|+++|++++|||||+++|++.....     +             +      ......+.+...    ..+.
T Consensus         6 ~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~-----g-------------~------~~~~~~~~~d~~----~~E~   57 (396)
T PRK00049          6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKK-----G-------------G------AEAKAYDQIDKA----PEEK   57 (396)
T ss_pred             ccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhc-----c-------------C------CcccchhhccCC----hHHH
Confidence            4456888999999999999999999998632100     0             0      000000000000    0000


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                        ..+.+.......+...+..+.++||||+..|.....      ..+..+|++++|+|+.+...-+. .+.+ .++..  
T Consensus        58 --~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~------~~~~~aD~~llVVDa~~g~~~qt-~~~~-~~~~~--  125 (396)
T PRK00049         58 --ARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVSAADGPMPQT-REHI-LLARQ--  125 (396)
T ss_pred             --hcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHH------hhhccCCEEEEEEECCCCCchHH-HHHH-HHHHH--
Confidence              111222222223334456788999999976544444      56788999999999987532222 2223 22222  


Q ss_pred             CCCCcEE-EEEecCCCCCCCC-H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc----------chH
Q psy871          175 LASCPVL-ILGNKIDKHGAAS-E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ----------GYG  238 (249)
Q Consensus       175 ~~~~p~i-vv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~  238 (249)
                       .++|.+ +++||+|+.+... .    +++...+....            +....++++++||++|.          |+.
T Consensus       126 -~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~  192 (396)
T PRK00049        126 -VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD------------FPGDDTPIIRGSALKALEGDDDEEWEKKIL  192 (396)
T ss_pred             -cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC------------CCccCCcEEEeecccccCCCCcccccccHH
Confidence             568976 5899999975211 1    12333333322            11234789999999875          466


Q ss_pred             HHHHHHhhh
Q psy871          239 DGFRWLANY  247 (249)
Q Consensus       239 ~l~~~l~~~  247 (249)
                      .+++.|.+.
T Consensus       193 ~ll~~l~~~  201 (396)
T PRK00049        193 ELMDAVDSY  201 (396)
T ss_pred             HHHHHHHhc
Confidence            777777654

>KOG3883|consensus

Probab=99.75  E-value=2.1e-16  Score=108.65  Aligned_cols=161  Identities=18%  Similarity=0.213  Sum_probs=115.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCC---CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ---PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +..|++|+|..++|||+++..|..++...   ..||++   +++                                    
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE---DiY------------------------------------   48 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE---DIY------------------------------------   48 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh---hhe------------------------------------
Confidence            45699999999999999999998776552   233332   111                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                            -..-..-++....+.++||.|.... .++..      .+...+|++++|++..++.+|+.....-+++-+....
T Consensus        49 ------~~svet~rgarE~l~lyDTaGlq~~~~eLpr------hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdK  116 (198)
T KOG3883|consen   49 ------VASVETDRGAREQLRLYDTAGLQGGQQELPR------HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDK  116 (198)
T ss_pred             ------eEeeecCCChhheEEEeecccccCchhhhhH------hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcccc
Confidence                  0000111234457899999997665 44444      5667899999999999999998766444444333344


Q ss_pred             CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..+|+++++||+|+.+  +...+-...+++.-.                 +..++++|.....+-+.|.+|+.++
T Consensus       117 KEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEk-----------------vkl~eVta~dR~sL~epf~~l~~rl  174 (198)
T KOG3883|consen  117 KEVPIVVLANKRDRAEPREVDMDVAQIWAKREK-----------------VKLWEVTAMDRPSLYEPFTYLASRL  174 (198)
T ss_pred             ccccEEEEechhhcccchhcCHHHHHHHHhhhh-----------------eeEEEEEeccchhhhhHHHHHHHhc
Confidence            6799999999999965  344445555555433                 8999999999999999999998754

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.74  E-value=1.2e-17  Score=139.64  Aligned_cols=185  Identities=15%  Similarity=0.096  Sum_probs=105.7

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+++++|+++|+.++|||||+.+|+...-.......    ..+.          ......|+.++..++..+...+.. 
T Consensus         3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~----~~~~----------~~~~~~~~~~~~~a~~~D~~~~Er-   67 (447)
T PLN00043          3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVI----ERFE----------KEAAEMNKRSFKYAWVLDKLKAER-   67 (447)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHH----HHHh----------hhhhhhcccchhhhhhhcCCHhHH-
Confidence            4567889999999999999999999753211100000    0000          000111222222222222221111 


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhh-------HhhHHHHHHH
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF-------EESKSELQCL  169 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-------~~~~~~~~~~  169 (249)
                      ..+.+.......++..+..+.++|+||++.|.....      ..+..+|+.++|+|+++. .|       ....+.+.. 
T Consensus        68 ~rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~------~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~-  139 (447)
T PLN00043         68 ERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMI------TGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALL-  139 (447)
T ss_pred             hcCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHH------hhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHH-
Confidence            112222333344555677899999999999877766      667899999999999873 12       122222222 


Q ss_pred             HhccCCCCCc-EEEEEecCCCCCC-CC-------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          170 LTDESLASCP-VLILGNKIDKHGA-AS-------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       170 ~~~~~~~~~p-~ivv~nK~Dl~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      +.   ..++| +++++||+|+.+. ..       .+++..+++..+            +....++++++||++|.|+.+
T Consensus       140 ~~---~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g------------~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        140 AF---TLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG------------YNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             HH---HcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcC------------CCcccceEEEEeccccccccc
Confidence            11   25675 6889999998631 11       234444444333            222347899999999999853

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=8.4e-17  Score=124.75  Aligned_cols=175  Identities=23%  Similarity=0.221  Sum_probs=118.2

Q ss_pred             HhHHHHhhhcccccc-----------eecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceE
Q psy871            4 IWDWFTGVLGYLGLW-----------TKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKL   69 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~-----------~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~   69 (249)
                      ++.++-+-|.||+..           ...+.|+|.|+||||||||++++++..+.   ++++|.+..++-.         
T Consensus       140 iik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf---------  210 (346)
T COG1084         140 IIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF---------  210 (346)
T ss_pred             HHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee---------
Confidence            444555555555543           35678999999999999999999987643   6666666555544         


Q ss_pred             EEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCc-hh-hhhhHH-HHhhhhccccccce
Q psy871           70 LFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR-ER-FEESKS-ELQCLLTDESLASS  146 (249)
Q Consensus        70 ~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~-~~-~~~~~~-~~~~~~~~~~~~d~  146 (249)
                                                              +.....+.++||||. ++ +.+..+ ..+..+.--+..++
T Consensus       211 ----------------------------------------e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~  250 (346)
T COG1084         211 ----------------------------------------ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGV  250 (346)
T ss_pred             ----------------------------------------ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCe
Confidence                                                    333457899999992 21 222222 23344444567899


Q ss_pred             EEEEEECCChhhhHh--hHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCce
Q psy871          147 IVFLVDTSDRERFEE--SKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI  224 (249)
Q Consensus       147 ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (249)
                      +++++|++..+.+.-  -...+.++...   ...|+++|.||+|..+....+++........                ..
T Consensus       251 IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~----------------~~  311 (346)
T COG1084         251 ILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEG----------------GE  311 (346)
T ss_pred             EEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhc----------------cc
Confidence            999999999877632  22344444333   4589999999999987666666666655443                13


Q ss_pred             eEEEeeeccccchHHHHHHHhh
Q psy871          225 ELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       225 ~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ....+|+..+.+++.+.+.+..
T Consensus       312 ~~~~~~~~~~~~~d~~~~~v~~  333 (346)
T COG1084         312 EPLKISATKGCGLDKLREEVRK  333 (346)
T ss_pred             cccceeeeehhhHHHHHHHHHH
Confidence            4677899999999887766544

>KOG1145|consensus

Probab=99.74  E-value=1e-16  Score=131.37  Aligned_cols=165  Identities=19%  Similarity=0.260  Sum_probs=115.4

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +..|++.|.|+|+...||||||.+|.+..+...                         ...                   
T Consensus       149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-------------------------E~G-------------------  184 (683)
T KOG1145|consen  149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-------------------------EAG-------------------  184 (683)
T ss_pred             cCCCCCeEEEeecccCChhhHHHHHhhCceehh-------------------------hcC-------------------
Confidence            346899999999999999999999976544310                         111                   


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      |+..+.......++ ....+.+.|||||..|.+.+.      +.....|++++|+.++|.-..+..+ -++..    ...
T Consensus       185 GITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRa------RGA~vtDIvVLVVAadDGVmpQT~E-aIkhA----k~A  252 (683)
T KOG1145|consen  185 GITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRA------RGANVTDIVVLVVAADDGVMPQTLE-AIKHA----KSA  252 (683)
T ss_pred             CccceeceEEEecC-CCCEEEEecCCcHHHHHHHHh------ccCccccEEEEEEEccCCccHhHHH-HHHHH----Hhc
Confidence            22222333333334 335789999999999999999      7888999999999998853333322 12222    227


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      +.|+++.+||||.+.. +++.+.+.+-..+...       + .-..+++++++||++|.|++.|.+.+.-
T Consensus       253 ~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~-------E-~~GGdVQvipiSAl~g~nl~~L~eaill  313 (683)
T KOG1145|consen  253 NVPIVVAINKIDKPGA-NPEKVKRELLSQGIVV-------E-DLGGDVQVIPISALTGENLDLLEEAILL  313 (683)
T ss_pred             CCCEEEEEeccCCCCC-CHHHHHHHHHHcCccH-------H-HcCCceeEEEeecccCCChHHHHHHHHH
Confidence            8999999999998875 5555555554443211       1 2235689999999999999999887653

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.74  E-value=7e-18  Score=142.22  Aligned_cols=188  Identities=19%  Similarity=0.121  Sum_probs=99.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchh--HHHHHHhcCCcccccC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKT--TLLHMLKDDRLAQPVP   96 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gks--sl~~~l~~~~~~~~~~   96 (249)
                      +++++|+++|++++|||||+++|+...-.....+.+    .+..          .....|++  ++-.++..+...+.. 
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~----~~~~----------~~~~~g~~~~~~~~a~~~D~~~eEr-   89 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLA----SLHN----------DSKRHGTQGEKLDLALLVDGLQAER-   89 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHH----HHHH----------HHHhcCCCccccchhhhccCChHHh-
Confidence            677899999999999999999997543221111100    0000          00001111  111111111111110 


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      ..+.+.......++..+..+.++||||++.|.....      ..+..+|++++|+|+.....-+... .+ .+....  .
T Consensus        90 ~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~------~~l~~aD~allVVDa~~G~~~qt~~-~~-~l~~~l--g  159 (474)
T PRK05124         90 EQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMA------TGASTCDLAILLIDARKGVLDQTRR-HS-FIATLL--G  159 (474)
T ss_pred             hcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHH------HHHhhCCEEEEEEECCCCccccchH-HH-HHHHHh--C
Confidence            111222222233445567899999999887655333      4468899999999998743222111 11 122221  2


Q ss_pred             CCcEEEEEecCCCCCCC--CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871          177 SCPVLILGNKIDKHGAA--SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG  240 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  240 (249)
                      ..|+++++||+|+.+..  ..+++.+.+..+.....        . ....+++++||++|.|++++
T Consensus       160 ~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~--------~-~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        160 IKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLP--------G-NLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             CCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcC--------C-CCCceEEEEEeecCCCcccc
Confidence            35789999999997521  12223332222110000        0 12478999999999999764

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.73  E-value=3.3e-17  Score=138.44  Aligned_cols=159  Identities=18%  Similarity=0.131  Sum_probs=105.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      |+..+|+++|.||+|||||+|+|++.+....                       -|++                      
T Consensus         1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~Vg-----------------------NwpG----------------------   35 (653)
T COG0370           1 MKKLTVALVGNPNVGKTTLFNALTGANQKVG-----------------------NWPG----------------------   35 (653)
T ss_pred             CCcceEEEecCCCccHHHHHHHHhccCceec-----------------------CCCC----------------------
Confidence            3567899999999999999999988654310                       0111                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhcc--ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTD--ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                       .|.......+...+..+.++|.||..++......-+-.-++  -..+|+++.|+|+++.+.--.+.-++.+       .
T Consensus        36 -vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE-------~  107 (653)
T COG0370          36 -VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLE-------L  107 (653)
T ss_pred             -eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHH-------c
Confidence             11111122333445568999999966554443211111122  2568999999999997665554333333       5


Q ss_pred             CCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          177 SCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +.|+++++|++|.... ..+-+.+..-+.++                 +|++++||++|.|++++++.+.+.
T Consensus       108 g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG-----------------vPVv~tvA~~g~G~~~l~~~i~~~  162 (653)
T COG0370         108 GIPMILALNMIDEAKKRGIRIDIEKLSKLLG-----------------VPVVPTVAKRGEGLEELKRAIIEL  162 (653)
T ss_pred             CCCeEEEeccHhhHHhcCCcccHHHHHHHhC-----------------CCEEEEEeecCCCHHHHHHHHHHh
Confidence            8999999999998652 12223444444444                 899999999999999999988653

>PLN03127 Elongation factor Tu; Provisional

Probab=99.73  E-value=9.4e-17  Score=134.24  Aligned_cols=178  Identities=16%  Similarity=0.154  Sum_probs=100.2

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+++++|+++|++++|||||+++|++....     .+.          .....+.-.|..              . ....
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~-----~g~----------~~~~~~~~~D~~--------------~-~E~~  107 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAE-----EGK----------AKAVAFDEIDKA--------------P-EEKA  107 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHH-----hhc----------ccceeeccccCC--------------h-hHhh
Confidence            467889999999999999999999632100     000          000000000000              0 0001


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                      .+.+.+.....++..+..+.++||||+..|.....      .....+|++++|+|+.+...-+. .+.+. ++..   .+
T Consensus       108 rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~------~g~~~aD~allVVda~~g~~~qt-~e~l~-~~~~---~g  176 (447)
T PLN03127        108 RGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI------TGAAQMDGGILVVSAPDGPMPQT-KEHIL-LARQ---VG  176 (447)
T ss_pred             cCceeeeeEEEEcCCCeEEEEEECCCccchHHHHH------HHHhhCCEEEEEEECCCCCchhH-HHHHH-HHHH---cC
Confidence            22233333344555567889999999976544443      45567999999999987532222 22222 2222   57


Q ss_pred             Cc-EEEEEecCCCCCCCC-HHHHH----HHhhhcccccCcccCCCCCCCCCceeEEEeeec---cccc-------hHHHH
Q psy871          178 CP-VLILGNKIDKHGAAS-EEEIR----QYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL---MRQG-------YGDGF  241 (249)
Q Consensus       178 ~p-~ivv~nK~Dl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~g~g-------v~~l~  241 (249)
                      +| +++++||+|+.+... .+.+.    +.+....            +....++++++||.   +|.|       +.+++
T Consensus       177 ip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~------------~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll  244 (447)
T PLN03127        177 VPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK------------FPGDEIPIIRGSALSALQGTNDEIGKNAILKLM  244 (447)
T ss_pred             CCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC------------CCCCcceEEEeccceeecCCCcccccchHHHHH
Confidence            88 578899999975211 11122    2222211            11234788999886   4444       67777


Q ss_pred             HHHhhhc
Q psy871          242 RWLANYI  248 (249)
Q Consensus       242 ~~l~~~i  248 (249)
                      +.|.+.+
T Consensus       245 ~~l~~~l  251 (447)
T PLN03127        245 DAVDEYI  251 (447)
T ss_pred             HHHHHhC
Confidence            7776543

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=1.8e-18  Score=137.79  Aligned_cols=188  Identities=19%  Similarity=0.163  Sum_probs=111.9

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+++.+++++|++++|||||+.+|+..--.....+.......              ....||.++-.++..+...+.. 
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~e--------------a~~~gK~sf~fawvlD~tkeER-   67 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKE--------------AKELGKESFKFAWVLDKTKEER-   67 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHH--------------HHhcCCCceEEEEEecCChhHH-
Confidence            3467889999999999999999999854322211111111111              0123333332222222222111 


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hhHhhHHHHHHHHhcc
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RFEESKSELQCLLTDE  173 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~~~~~~~~~~~~~~  173 (249)
                      ..+.+.......++.....+.++|+||+..|....-      .....+|+.++|+|+....   +|.. ..+.++.+-..
T Consensus        68 erGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmI------tGasqAD~aVLVV~a~~~efE~g~~~-~gQtrEH~~La  140 (428)
T COG5256          68 ERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMI------TGASQADVAVLVVDARDGEFEAGFGV-GGQTREHAFLA  140 (428)
T ss_pred             hcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhh------cchhhccEEEEEEECCCCcccccccc-CCchhHHHHHH
Confidence            223344444455666666799999999988876655      7788999999999998862   2211 11111111111


Q ss_pred             -CCCCCcEEEEEecCCCCCCCCH-------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          174 -SLASCPVLILGNKIDKHGAASE-------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       174 -~~~~~p~ivv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                       .+.-..+|+++||+|+++ .+.       .++..+++.++            +....++++||||.+|.|+.+
T Consensus       141 ~tlGi~~lIVavNKMD~v~-wde~rf~ei~~~v~~l~k~~G------------~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         141 RTLGIKQLIVAVNKMDLVS-WDEERFEEIVSEVSKLLKMVG------------YNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HhcCCceEEEEEEcccccc-cCHHHHHHHHHHHHHHHHHcC------------CCccCCeEEecccccCCcccc
Confidence             113356899999999987 233       33334444444            333458999999999999854

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.73  E-value=3.6e-17  Score=136.96  Aligned_cols=186  Identities=15%  Similarity=0.096  Sum_probs=101.8

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+++++|+++|++++|||||+.+|+...-......+    +.+.          ......|+.++-.++..+...+.. 
T Consensus         3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~----~~~~----------~~~~~~~~~s~~~a~~~D~~~~Er-   67 (446)
T PTZ00141          3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTI----EKFE----------KEAAEMGKGSFKYAWVLDKLKAER-   67 (446)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHH----HHHh----------hHHHhhCCcchhhhhhhcCChHHH-
Confidence            4567889999999999999999999753211100000    0000          000111221211111111111110 


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hh---HhhHHHHHHHH
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RF---EESKSELQCLL  170 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~---~~~~~~~~~~~  170 (249)
                      ..+.+.......++..+..+.++|+||+.+|.....      ..+..+|++++|+|++...   .+   ....+.+... 
T Consensus        68 ~rGiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~------~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-  140 (446)
T PTZ00141         68 ERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMI------TGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-  140 (446)
T ss_pred             hcCEeEEeeeEEEccCCeEEEEEECCChHHHHHHHH------HhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-
Confidence            111222222233445567899999999998865554      6678999999999998742   11   1222222222 


Q ss_pred             hccCCCCCc-EEEEEecCCCCC-CCC---H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          171 TDESLASCP-VLILGNKIDKHG-AAS---E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       171 ~~~~~~~~p-~ivv~nK~Dl~~-~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      .   ..++| +++++||+|... ...   .    +++.+.+....            .....++++++||++|.|+.+
T Consensus       141 ~---~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g------------~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        141 F---TLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVG------------YNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             H---HcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcC------------CCcccceEEEeecccCCCccc
Confidence            2   25776 679999999532 111   2    23333333222            122348999999999999964

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.73  E-value=1.8e-17  Score=137.74  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=68.9

Q ss_pred             ccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEec
Q psy871          107 DYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK  186 (249)
Q Consensus       107 ~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  186 (249)
                      ..++..+..+.++||||++.|.....      ..+..+|++++|+|+.....-+..+ .+ .+....  ...++++++||
T Consensus        73 ~~~~~~~~~~~liDtPGh~~f~~~~~------~~~~~aD~allVVda~~G~~~qt~~-~~-~~~~~~--~~~~iivviNK  142 (406)
T TIGR02034        73 RYFSTDKRKFIVADTPGHEQYTRNMA------TGASTADLAVLLVDARKGVLEQTRR-HS-YIASLL--GIRHVVLAVNK  142 (406)
T ss_pred             EEEccCCeEEEEEeCCCHHHHHHHHH------HHHhhCCEEEEEEECCCCCccccHH-HH-HHHHHc--CCCcEEEEEEe
Confidence            34444566889999999988765444      4668999999999998753322211 12 222221  23468899999


Q ss_pred             CCCCCCCC--HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          187 IDKHGAAS--EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       187 ~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      +|+.+...  .+++.+.+..+...          ......+++++||++|.|+++
T Consensus       143 ~D~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       143 MDLVDYDEEVFENIKKDYLAFAEQ----------LGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             cccccchHHHHHHHHHHHHHHHHH----------cCCCCccEEEeecccCCCCcc
Confidence            99975211  11222222211100          111246899999999999985

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK13768 GTPase; Provisional

Probab=99.72  E-value=3.8e-17  Score=127.27  Aligned_cols=134  Identities=20%  Similarity=0.157  Sum_probs=81.9

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccc--cceEEEEEECCChhhhHhhHHH-HHHHHhccCCCCCcEEEEEecCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESL--ASSIVFLVDTSDRERFEESKSE-LQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~--~d~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      +..++++|+||+.+.......+..+.+.+..  ++++++|+|+.......+.... +...... ...++|+++|+||+|+
T Consensus        96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~  174 (253)
T PRK13768         96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADL  174 (253)
T ss_pred             CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhh
Confidence            3468999999988766555555555555554  8999999999765433332211 1111111 1257999999999999


Q ss_pred             CCCCCHHHHHHHhhhccccc---Cccc-----------CCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          190 HGAASEEEIRQYFGLYGLTT---GKVA-----------TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~---~~~~-----------~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+....++..+.++......   ....           -..... ....+++++||+++.|+++++++|.+.+
T Consensus       175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~-~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEET-GLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHH-CCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            87655555444444200000   0000           000000 1225799999999999999999998865

>PLN03126 Elongation factor Tu; Provisional

Probab=99.71  E-value=2.3e-16  Score=132.62  Aligned_cols=165  Identities=18%  Similarity=0.157  Sum_probs=95.4

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+++++|+++|++++|||||+++|+...........             .+....  |..              .+. ..
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~-------------~~~~~~--D~~--------------~~E-r~  127 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAP-------------KKYDEI--DAA--------------PEE-RA  127 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccc-------------cccccc--cCC--------------hhH-Hh
Confidence            467789999999999999999999853221100000             000000  000              000 01


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                      .+.+.......++..+..+.++|+||++.|.....      ..+..+|++++|+|+.+...-+. .+++... ..   .+
T Consensus       128 rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~------~g~~~aD~ailVVda~~G~~~qt-~e~~~~~-~~---~g  196 (478)
T PLN03126        128 RGITINTATVEYETENRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVSGADGPMPQT-KEHILLA-KQ---VG  196 (478)
T ss_pred             CCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHH------HHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HH---cC
Confidence            11122222233344566789999999988765443      66678999999999987533222 2233322 22   57


Q ss_pred             Cc-EEEEEecCCCCCCCC-HH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc
Q psy871          178 CP-VLILGNKIDKHGAAS-EE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ  235 (249)
Q Consensus       178 ~p-~ivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  235 (249)
                      +| +++++||+|+.+... .+    ++.++++...            +....++++++||.+|.
T Consensus       197 i~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g------------~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        197 VPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE------------FPGDDIPIISGSALLAL  248 (478)
T ss_pred             CCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC------------CCcCcceEEEEEccccc
Confidence            78 778999999976211 12    3333333322            12235899999999874

>cd04167 Snu114p Snu114p subfamily

Probab=99.71  E-value=1e-16  Score=122.40  Aligned_cols=68  Identities=18%  Similarity=0.316  Sum_probs=50.1

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ....+.+|||||+..|.....      .++..+|++++|+|+++..+... ..++.....    .+.|+++++||+|+.
T Consensus        69 ~~~~i~iiDtpG~~~f~~~~~------~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          69 KSYLFNIIDTPGHVNFMDEVA------AALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             CEEEEEEEECCCCcchHHHHH------HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            346789999999988765544      66788999999999988665533 223333221    469999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.71  E-value=2.9e-16  Score=127.19  Aligned_cols=158  Identities=25%  Similarity=0.245  Sum_probs=115.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhh--hh-HHHHhhhhccccc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE--ES-KSELQCLLTDESL  143 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~--~~-~~~~~~~~~~~~~  143 (249)
                      ..+.++|.|++|||+|+|++...........++.|++-.....+-.+..+.++||+|.+...  .+ ..+..+.+..+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            46889999999999999999999887555555566655444444455669999999977433  23 3345677788899


Q ss_pred             cceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCc
Q psy871          144 ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRP  223 (249)
Q Consensus       144 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (249)
                      +|++++|+|.....+..+-  .+.++++.   .++|+++|+||+|-..  ..+...++... +                .
T Consensus        84 ADvilfvVD~~~Git~~D~--~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efysl-G----------------~  139 (444)
T COG1160          84 ADVILFVVDGREGITPADE--EIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSL-G----------------F  139 (444)
T ss_pred             CCEEEEEEeCCCCCCHHHH--HHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhc-C----------------C
Confidence            9999999999885443332  45555543   6799999999999763  12333333332 2                2


Q ss_pred             eeEEEeeeccccchHHHHHHHhhhc
Q psy871          224 IELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       224 ~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      -+++++||..|.|+.+|++.+.+.+
T Consensus       140 g~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         140 GEPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             CCceEeehhhccCHHHHHHHHHhhc
Confidence            5789999999999999999998765

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.70  E-value=4.4e-16  Score=130.04  Aligned_cols=115  Identities=12%  Similarity=0.146  Sum_probs=73.8

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh-hhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR-ERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      ..+.++|+||++.|.....      ..+..+|++++|+|+.+. ...+. .+.+. ++..  ..-.|+++++||+|+.+.
T Consensus       117 ~~i~~IDtPGH~~fi~~m~------~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~--lgi~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATML------NGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEI--MKLKHIIILQNKIDLVKE  186 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHH------HHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHH--cCCCcEEEEEecccccCH
Confidence            3678999999987755444      566789999999999974 22222 22222 2222  123468999999999863


Q ss_pred             CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...++..+.++....          .......+++++||++|.|++.|++.|.+.+
T Consensus       187 ~~~~~~~~ei~~~l~----------~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        187 AQAQDQYEEIRNFVK----------GTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHHH----------hhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            222222222222110          0011347999999999999999999998644

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.69  E-value=6.5e-16  Score=130.16  Aligned_cols=157  Identities=23%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhh-HH-HHhhhhccccccc
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEES-KS-ELQCLLTDESLAS  145 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~-~~-~~~~~~~~~~~~d  145 (249)
                      ++.++|.+++|||++++++.+.......+..+.++..........+..+.+|||||....... .+ ........++.+|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            367899999999999999998765433333334433332333334557999999997432211 11 2233446678899


Q ss_pred             eEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCcee
Q psy871          146 SIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE  225 (249)
Q Consensus       146 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (249)
                      ++++|+|+.+..+..+.  .+.++++.   .++|+++|+||+|+.....  ...++ ...+                ..+
T Consensus        81 ~vl~vvD~~~~~~~~d~--~i~~~l~~---~~~piilVvNK~D~~~~~~--~~~~~-~~lg----------------~~~  136 (429)
T TIGR03594        81 VILFVVDGREGLTPEDE--EIAKWLRK---SGKPVILVANKIDGKKEDA--VAAEF-YSLG----------------FGE  136 (429)
T ss_pred             EEEEEEeCCCCCCHHHH--HHHHHHHH---hCCCEEEEEECccCCcccc--cHHHH-HhcC----------------CCC
Confidence            99999999885443332  34444443   5799999999999875321  11121 2222                136


Q ss_pred             EEEeeeccccchHHHHHHHhhhc
Q psy871          226 LFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       226 ~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++++||+.|.|++++++.+.+.+
T Consensus       137 ~~~vSa~~g~gv~~ll~~i~~~l  159 (429)
T TIGR03594       137 PIPISAEHGRGIGDLLDAILELL  159 (429)
T ss_pred             eEEEeCCcCCChHHHHHHHHHhc
Confidence            89999999999999999998765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04169 RF3 RF3 subfamily

Probab=99.69  E-value=8.4e-16  Score=120.57  Aligned_cols=76  Identities=21%  Similarity=0.338  Sum_probs=52.8

Q ss_pred             cccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecC
Q psy871          108 YFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI  187 (249)
Q Consensus       108 ~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  187 (249)
                      .++..+..+.+|||||+.+|.....      ..+..+|++++|+|+++..... ....+ ++...   .++|+++++||+
T Consensus        65 ~~~~~~~~i~liDTPG~~df~~~~~------~~l~~aD~~IlVvda~~g~~~~-~~~i~-~~~~~---~~~P~iivvNK~  133 (267)
T cd04169          65 QFEYRDCVINLLDTPGHEDFSEDTY------RTLTAVDSAVMVIDAAKGVEPQ-TRKLF-EVCRL---RGIPIITFINKL  133 (267)
T ss_pred             EEeeCCEEEEEEECCCchHHHHHHH------HHHHHCCEEEEEEECCCCccHH-HHHHH-HHHHh---cCCCEEEEEECC
Confidence            3445567899999999988765443      4567899999999998753222 12222 33222   579999999999


Q ss_pred             CCCCCCC
Q psy871          188 DKHGAAS  194 (249)
Q Consensus       188 Dl~~~~~  194 (249)
                      |+.....
T Consensus       134 D~~~a~~  140 (267)
T cd04169         134 DREGRDP  140 (267)
T ss_pred             ccCCCCH
Confidence            9876533

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.69  E-value=1.5e-15  Score=134.60  Aligned_cols=159  Identities=25%  Similarity=0.223  Sum_probs=104.0

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhh-hhHH-HHhhhhccccc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKS-ELQCLLTDESL  143 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~-~~~~~~~~~~~  143 (249)
                      ..++.++|.+++|||+|++++.+.......+.++.++..........+..+.+|||||.+... .... ...+....+..
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~  354 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL  354 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence            457899999999999999999977654333344444444333333335578899999976321 1111 12333456789


Q ss_pred             cceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCc
Q psy871          144 ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRP  223 (249)
Q Consensus       144 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (249)
                      +|++++|+|+++...  .....+...++.   .++|+++|+||+|+...  .....++.. ..                .
T Consensus       355 aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~--~~~~~~~~~-lg----------------~  410 (712)
T PRK09518        355 ADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQAS--EYDAAEFWK-LG----------------L  410 (712)
T ss_pred             CCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccc--hhhHHHHHH-cC----------------C
Confidence            999999999986422  222234444433   68999999999998653  122222221 11                0


Q ss_pred             eeEEEeeeccccchHHHHHHHhhhc
Q psy871          224 IELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       224 ~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...+++||++|.|++++++++.+.+
T Consensus       411 ~~~~~iSA~~g~GI~eLl~~i~~~l  435 (712)
T PRK09518        411 GEPYPISAMHGRGVGDLLDEALDSL  435 (712)
T ss_pred             CCeEEEECCCCCCchHHHHHHHHhc
Confidence            2357999999999999999998765

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.69  E-value=3.9e-16  Score=136.74  Aligned_cols=186  Identities=18%  Similarity=0.120  Sum_probs=96.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCch--hHHHHHHhcCCcccccC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK--TTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gk--ssl~~~l~~~~~~~~~~   96 (249)
                      .+..+|+++|++++|||||+++|+...-.......+.....              ....|+  .++-.++..+...+.. 
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~--------------~~~~g~tr~~~~~~~~~d~~~~E~-   86 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERD--------------SKKVGTQGDEIDLALLVDGLAAER-   86 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHH--------------HHhcCCCCCcceeeeeccCCHHHH-
Confidence            45678999999999999999999865432211100000000              000000  0000000000000000 


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      ..+.+.......++..+..+.++||||++.|.....      ..+..+|++++|+|+.....-+.. +.+. ++...  .
T Consensus        87 ~rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~------~~~~~aD~~llVvda~~g~~~~t~-e~~~-~~~~~--~  156 (632)
T PRK05506         87 EQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMV------TGASTADLAIILVDARKGVLTQTR-RHSF-IASLL--G  156 (632)
T ss_pred             hCCcCceeeeeEEccCCceEEEEECCChHHHHHHHH------HHHHhCCEEEEEEECCCCccccCH-HHHH-HHHHh--C
Confidence            111222222234445566788999999987654333      457889999999999764322211 1111 22221  2


Q ss_pred             CCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          177 SCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      ..|+++++||+|+.+.  ...+++...+..+...          ......+++++||++|.|+++
T Consensus       157 ~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~----------~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        157 IRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAK----------LGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             CCeEEEEEEecccccchhHHHHHHHHHHHHHHHH----------cCCCCccEEEEecccCCCccc
Confidence            3578899999999751  1112222222211100          112336799999999999974

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.69  E-value=1.1e-15  Score=128.98  Aligned_cols=156  Identities=22%  Similarity=0.218  Sum_probs=101.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhh-hHH-HHhhhhcccccc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKS-ELQCLLTDESLA  144 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~-~~~~~~~~~~~~  144 (249)
                      .++.++|.+++|||++++++............+.++..........+..+.+|||||++.... ... ........+..+
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a   81 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA   81 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            368899999999999999999776532222223333322222233346789999999876222 111 122334567889


Q ss_pred             ceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCce
Q psy871          145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI  224 (249)
Q Consensus       145 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (249)
                      |++++|+|+.+..+..+.  .+..+++.   .+.|+++|+||+|+.+.  .....++. ..+                ..
T Consensus        82 d~il~vvd~~~~~~~~~~--~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~-~lg----------------~~  137 (435)
T PRK00093         82 DVILFVVDGRAGLTPADE--EIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFY-SLG----------------LG  137 (435)
T ss_pred             CEEEEEEECCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHH-hcC----------------CC
Confidence            999999999885443322  33444443   47999999999997542  22222222 222                12


Q ss_pred             eEEEeeeccccchHHHHHHHhh
Q psy871          225 ELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       225 ~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      .++++||++|.|++++++.+.+
T Consensus       138 ~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        138 EPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             CCEEEEeeCCCCHHHHHHHHHh
Confidence            4799999999999999999876

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.69  E-value=2.7e-16  Score=114.56  Aligned_cols=133  Identities=25%  Similarity=0.326  Sum_probs=79.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +...|+++||+|||||+|+..|..+....+.+...+.....                                       
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~---------------------------------------   42 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYN---------------------------------------   42 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECC---------------------------------------
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEE---------------------------------------
Confidence            45689999999999999999999875544333332222111                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC-hhhhHhhHHHHHHHHhccC--CC
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD-RERFEESKSELQCLLTDES--LA  176 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~--~~  176 (249)
                              .-......+.++|+|||.+......   ..+.+...+.+||+|+|++. +....+..+.+..++....  ..
T Consensus        43 --------~~~~~~~~~~lvD~PGH~rlr~~~~---~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~  111 (181)
T PF09439_consen   43 --------VNNSKGKKLRLVDIPGHPRLRSKLL---DELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKN  111 (181)
T ss_dssp             --------GSSTCGTCECEEEETT-HCCCHHHH---HHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             --------eecCCCCEEEEEECCCcHHHHHHHH---HhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccC
Confidence                    0112234588999999988764222   22224677999999999985 4556666667777665433  35


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHh
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYF  202 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~  202 (249)
                      ..|+++++||+|+....+...+...+
T Consensus       112 ~~piLIacNK~Dl~~A~~~~~Ik~~L  137 (181)
T PF09439_consen  112 KPPILIACNKQDLFTAKPPKKIKKLL  137 (181)
T ss_dssp             --EEEEEEE-TTSTT---HHHHHHHH
T ss_pred             CCCEEEEEeCccccccCCHHHHHHHH
Confidence            79999999999998865555444443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0096|consensus

Probab=99.68  E-value=1.2e-16  Score=113.80  Aligned_cols=158  Identities=16%  Similarity=0.194  Sum_probs=122.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ...+++++|.-|.||||++++.+.+++. .+.+|++.......+                                    
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f------------------------------------   52 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLF------------------------------------   52 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeee------------------------------------
Confidence            3679999999999999999999999888 466677755555411                                    


Q ss_pred             ccceeceecccccc-ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           99 HPTRRVWKDYFPAV-DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        99 ~~~~~~~~~~~~~~-~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                                ..+. ...+-+|||.|++.+...+.      .+|=.+.+.+++||++..-+..+...|.+.+.+.  ..+
T Consensus        53 ----------~tn~g~irf~~wdtagqEk~gglrd------gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv--~~N  114 (216)
T KOG0096|consen   53 ----------DTNRGQIRFNVWDTAGQEKKGGLRD------GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRV--REN  114 (216)
T ss_pred             ----------ecccCcEEEEeeecccceeeccccc------ccEEecceeEEEeeeeehhhhhcchHHHHHHHHH--hcC
Confidence                      1111 24688999999999888887      6777789999999999999999888888888664  356


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+++.+||.|..........-.+.+                 ...+.++++||+++.|.+.-|.||++.+
T Consensus       115 iPiv~cGNKvDi~~r~~k~k~v~~~r-----------------kknl~y~~iSaksn~NfekPFl~LarKl  168 (216)
T KOG0096|consen  115 IPIVLCGNKVDIKARKVKAKPVSFHR-----------------KKNLQYYEISAKSNYNFERPFLWLARKL  168 (216)
T ss_pred             CCeeeeccceeccccccccccceeee-----------------cccceeEEeecccccccccchHHHhhhh
Confidence            99999999999765432222222222                 2348899999999999999999999875

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=1.6e-15  Score=119.04  Aligned_cols=72  Identities=17%  Similarity=0.168  Sum_probs=51.2

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      ...+..+.++||||+..|.....      ..++.+|++++|+|+.+...-+. ...+.. +..   .++|+++++||+|+
T Consensus        60 ~~~~~~i~liDTPG~~df~~~~~------~~l~~aD~ailVVDa~~g~~~~t-~~~~~~-~~~---~~~p~ivviNK~D~  128 (270)
T cd01886          60 FWKDHRINIIDTPGHVDFTIEVE------RSLRVLDGAVAVFDAVAGVEPQT-ETVWRQ-ADR---YNVPRIAFVNKMDR  128 (270)
T ss_pred             EECCEEEEEEECCCcHHHHHHHH------HHHHHcCEEEEEEECCCCCCHHH-HHHHHH-HHH---cCCCEEEEEECCCC
Confidence            34467899999999887665444      67788999999999987532222 112222 222   67999999999998


Q ss_pred             CCC
Q psy871          190 HGA  192 (249)
Q Consensus       190 ~~~  192 (249)
                      .+.
T Consensus       129 ~~a  131 (270)
T cd01886         129 TGA  131 (270)
T ss_pred             CCC
Confidence            763

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.67  E-value=2.5e-15  Score=120.12  Aligned_cols=105  Identities=21%  Similarity=0.211  Sum_probs=63.1

Q ss_pred             EEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           24 LLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      |+++|.||||||||+|+|++..+.   ++++|+.+..+...+..          . +....+ ..+.         .+. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~----------~-~~~~r~-~~~~---------~~~-   58 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRV----------E-CPCKEL-GVSC---------NPR-   58 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEec----------C-CCchhh-hhhh---------ccc-
Confidence            589999999999999999987753   45566666665552110          0 000000 0000         000 


Q ss_pred             ceeceeccccc-cceEEEEEeCCCchh-hhhhHHHHhhhhccccccceEEEEEECC
Q psy871          101 TRRVWKDYFPA-VDAIVFLVDTSDRER-FEESKSELQCLLTDESLASSIVFLVDTS  154 (249)
Q Consensus       101 ~~~~~~~~~~~-~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~ii~v~d~~  154 (249)
                          ......+ ....+.+||+||... .........+++..++.+|++++|+|++
T Consensus        59 ----~~~~~~~~~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          59 ----YGKCIDGKRYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             ----ccccccCcCcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence                0000111 234589999999732 1222334567888999999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0462|consensus

Probab=99.67  E-value=1e-15  Score=125.56  Aligned_cols=179  Identities=16%  Similarity=0.127  Sum_probs=120.7

Q ss_pred             ccc-eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHh-cCCccc
Q psy871           16 GLW-TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLK-DDRLAQ   93 (249)
Q Consensus        16 ~~~-~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~-~~~~~~   93 (249)
                      .++ .+-+++.|+-+...|||||..+|+.-.-.                         -..+.+...++..+. ..++..
T Consensus        54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~-------------------------i~~~~~q~q~LDkl~vERERGI  108 (650)
T KOG0462|consen   54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGT-------------------------IDNNIGQEQVLDKLQVERERGI  108 (650)
T ss_pred             cCchhhccceEEEEEecCCcchHHHHHHHHhCC-------------------------CCCCCchhhhhhhhhhhhhcCc
Confidence            344 55679999999999999999999642110                         012223333332222 111111


Q ss_pred             ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                      .. .. .+..+....  +....+.++|||||-.|..-..      +.+..|+++++|+|++.....+.....+..+  + 
T Consensus       109 TI-ka-Qtasify~~--~~~ylLNLIDTPGHvDFs~EVs------Rslaac~G~lLvVDA~qGvqAQT~anf~lAf--e-  175 (650)
T KOG0462|consen  109 TI-KA-QTASIFYKD--GQSYLLNLIDTPGHVDFSGEVS------RSLAACDGALLVVDASQGVQAQTVANFYLAF--E-  175 (650)
T ss_pred             EE-Ee-eeeEEEEEc--CCceEEEeecCCCcccccceeh------ehhhhcCceEEEEEcCcCchHHHHHHHHHHH--H-
Confidence            00 00 111111111  4456789999999999987777      7889999999999999976666655444444  2 


Q ss_pred             CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                        .+..+|.|+||+|+..+ ..+++.+.+....             ..+..+++.+|||+|.|++++++.+.+++
T Consensus       176 --~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF-------------~~~~~~~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  176 --AGLAIIPVLNKIDLPSA-DPERVENQLFELF-------------DIPPAEVIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             --cCCeEEEeeeccCCCCC-CHHHHHHHHHHHh-------------cCCccceEEEEeccCccHHHHHHHHHhhC
Confidence              68999999999999886 5566655555442             22346899999999999999999998876

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.67  E-value=1.3e-15  Score=114.75  Aligned_cols=119  Identities=13%  Similarity=0.033  Sum_probs=67.2

Q ss_pred             EEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCC
Q psy871          115 IVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAAS  194 (249)
Q Consensus       115 ~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  194 (249)
                      .+.+||+||........+.+... ..+..+|++++|.|.    ++......+.+.+..   .+.|+++|+||+|+.....
T Consensus        53 ~l~l~DtpG~~~~~~~~~~~l~~-~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~  124 (197)
T cd04104          53 NVTLWDLPGIGSTAFPPDDYLEE-MKFSEYDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNE  124 (197)
T ss_pred             CceEEeCCCCCcccCCHHHHHHH-hCccCcCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhh
Confidence            58899999976433222211111 224667888887432    233333344444443   4689999999999953111


Q ss_pred             ---------HHHHHHHhh-hcccccCcccCCCCCCCCCceeEEEeeec--cccchHHHHHHHhhhc
Q psy871          195 ---------EEEIRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVL--MRQGYGDGFRWLANYI  248 (249)
Q Consensus       195 ---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~g~gv~~l~~~l~~~i  248 (249)
                               .+++.+.++ .+...       .........++|.+|+.  .+.|+..+.+.+...|
T Consensus       125 ~~~~~~~~~~~~~l~~i~~~~~~~-------~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l  183 (197)
T cd04104         125 QRSKPRSFNREQVLQEIRDNCLEN-------LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL  183 (197)
T ss_pred             hccccccccHHHHHHHHHHHHHHH-------HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence                     222222222 11100       00112234689999998  6799999999887755

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.67  E-value=3.4e-17  Score=125.95  Aligned_cols=131  Identities=18%  Similarity=0.080  Sum_probs=67.6

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhcccc--ccceEEEEEECCChh---hhHhhHHHHHHHHhccCCCCCcEEEEEecC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDES--LASSIVFLVDTSDRE---RFEESKSELQCLLTDESLASCPVLILGNKI  187 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~--~~d~ii~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  187 (249)
                      +..++++|||||.++...+..+...+..+.  ..-++++++|+....   .|-..  .+.... -....+.|.+.|+||+
T Consensus        90 ~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s-~~~~~~lP~vnvlsK~  166 (238)
T PF03029_consen   90 EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLS-IMLRLELPHVNVLSKI  166 (238)
T ss_dssp             H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHH-HHHHHTSEEEEEE--G
T ss_pred             CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHH-HHhhCCCCEEEeeecc
Confidence            347999999999998888887776666555  466788999997543   34222  222211 1111589999999999


Q ss_pred             CCCCCCCHHHHHHHhhhccccc-----------CcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          188 DKHGAASEEEIRQYFGLYGLTT-----------GKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       188 Dl~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+.+.. .+...++........           ..-...+..+. ...+++++|+++++|+++++..+.+.+
T Consensus       167 Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  167 DLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFG-LVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCS-SS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             Ccccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcC-CCceEEEEECCChHHHHHHHHHHHHHh
Confidence            998732 211111111100000           00000011111 113899999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.66  E-value=1.6e-15  Score=115.47  Aligned_cols=68  Identities=18%  Similarity=0.271  Sum_probs=51.9

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      .+..+.+|||||+..|.....      ..+..+|++++|+|+.+....+.. ..+.....    .++|+++++||+|+.
T Consensus        71 ~~~~i~iiDTPG~~~f~~~~~------~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          71 NEYLINLIDSPGHVDFSSEVT------AALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CceEEEEECCCCccccHHHHH------HHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence            356789999999998877666      677899999999999987555432 23333322    468999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.66  E-value=1.5e-15  Score=129.31  Aligned_cols=73  Identities=22%  Similarity=0.395  Sum_probs=51.6

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      ...+..+.+|||||+..|.....      ..+..+|++++|+|+++..... ....+ +...   ..++|+++++||+|+
T Consensus        75 ~~~~~~inliDTPG~~df~~~~~------~~l~~aD~aIlVvDa~~gv~~~-t~~l~-~~~~---~~~iPiiv~iNK~D~  143 (526)
T PRK00741         75 PYRDCLINLLDTPGHEDFSEDTY------RTLTAVDSALMVIDAAKGVEPQ-TRKLM-EVCR---LRDTPIFTFINKLDR  143 (526)
T ss_pred             EECCEEEEEEECCCchhhHHHHH------HHHHHCCEEEEEEecCCCCCHH-HHHHH-HHHH---hcCCCEEEEEECCcc
Confidence            33467799999999988775444      5567899999999998753222 12222 2222   268999999999998


Q ss_pred             CCCC
Q psy871          190 HGAA  193 (249)
Q Consensus       190 ~~~~  193 (249)
                      ....
T Consensus       144 ~~a~  147 (526)
T PRK00741        144 DGRE  147 (526)
T ss_pred             cccC
Confidence            7643

>KOG0090|consensus

Probab=99.66  E-value=3.7e-15  Score=108.58  Aligned_cols=175  Identities=23%  Similarity=0.274  Sum_probs=118.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +..|.++|+.+||||+|+-.|..+......+.+.+....+.                                       
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r---------------------------------------   78 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYR---------------------------------------   78 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEe---------------------------------------
Confidence            45799999999999999999988866666666665555541                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC-hhhhHhhHHHHHHHHhcc--CCCC
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD-RERFEESKSELQCLLTDE--SLAS  177 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~  177 (249)
                                ..+....++|.|||.+..   ..+..++.+-..+-++++|+|+.. +....+..+.+..++...  ....
T Consensus        79 ----------~gs~~~~LVD~PGH~rlR---~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~  145 (238)
T KOG0090|consen   79 ----------LGSENVTLVDLPGHSRLR---RKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNK  145 (238)
T ss_pred             ----------ecCcceEEEeCCCcHHHH---HHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCC
Confidence                      112238899999997653   333344444458999999999976 334455555666666554  3467


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhh----hcccccC---------cccC----------CCCCCCCCceeEEEeeeccc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFG----LYGLTTG---------KVAT----------PRSEMSGRPIELFMCSVLMR  234 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~---------~~~~----------~~~~~~~~~~~~~~~Sa~~g  234 (249)
                      +|++++.||.|+..+.+.+-+++.++    .+...+.         ....          ..+......+.+.++|++++
T Consensus       146 ~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~  225 (238)
T KOG0090|consen  146 PPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG  225 (238)
T ss_pred             CCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC
Confidence            89999999999988666655544443    2221111         0000          01122224578999999998


Q ss_pred             cchHHHHHHHhhhc
Q psy871          235 QGYGDGFRWLANYI  248 (249)
Q Consensus       235 ~gv~~l~~~l~~~i  248 (249)
                       +++++-+|+.+.+
T Consensus       226 -~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  226 -EIDQWESWIREAL  238 (238)
T ss_pred             -ChHHHHHHHHHhC
Confidence             8999999998764

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.65  E-value=3.4e-15  Score=102.93  Aligned_cols=113  Identities=27%  Similarity=0.362  Sum_probs=68.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      +|+|+|++|||||||+|+|++..........+                                             .+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~---------------------------------------------~T~   35 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPG---------------------------------------------TTR   35 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTT---------------------------------------------SSS
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccccccc---------------------------------------------cee
Confidence            68999999999999999998754221111111                                             111


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhH---HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESK---SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                      ......+......+.++||||........   .....++..+..+|++++|+|++++.. ......+.++ +    .+.|
T Consensus        36 ~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~  109 (116)
T PF01926_consen   36 DPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-EDDKNILREL-K----NKKP  109 (116)
T ss_dssp             SEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-HHHHHHHHHH-H----TTSE
T ss_pred             eeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHH-h----cCCC
Confidence            11001112234566899999965432222   234456677789999999999877322 1122222333 1    6899


Q ss_pred             EEEEEec
Q psy871          180 VLILGNK  186 (249)
Q Consensus       180 ~ivv~nK  186 (249)
                      +++|+||
T Consensus       110 ~i~v~NK  116 (116)
T PF01926_consen  110 IILVLNK  116 (116)
T ss_dssp             EEEEEES
T ss_pred             EEEEEcC
Confidence            9999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00503 prfC peptide chain release factor 3

Probab=99.64  E-value=1.2e-14  Score=123.92  Aligned_cols=72  Identities=24%  Similarity=0.378  Sum_probs=50.8

Q ss_pred             ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871          109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID  188 (249)
Q Consensus       109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  188 (249)
                      ++..+..+.+|||||+..|.....      ..+..+|++++|+|+++.  +......+.+....   .++|+++++||+|
T Consensus        75 ~~~~~~~inliDTPG~~df~~~~~------~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD  143 (527)
T TIGR00503        75 FPYRDCLVNLLDTPGHEDFSEDTY------RTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLD  143 (527)
T ss_pred             EeeCCeEEEEEECCChhhHHHHHH------HHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcc
Confidence            344567899999999987765444      556789999999999874  22111122333332   6799999999999


Q ss_pred             CCC
Q psy871          189 KHG  191 (249)
Q Consensus       189 l~~  191 (249)
                      +..
T Consensus       144 ~~~  146 (527)
T TIGR00503       144 RDI  146 (527)
T ss_pred             ccC
Confidence            865

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK13351 elongation factor G; Reviewed

Probab=99.64  E-value=5.4e-15  Score=130.94  Aligned_cols=70  Identities=20%  Similarity=0.215  Sum_probs=53.0

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+..+.+|||||+..|.....      ..+..+|++++|+|+++........ .+... ..   .++|+++++||+|+..
T Consensus        71 ~~~~i~liDtPG~~df~~~~~------~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~-~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         71 DNHRINLIDTPGHIDFTGEVE------RSLRVLDGAVVVFDAVTGVQPQTET-VWRQA-DR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             CCEEEEEEECCCcHHHHHHHH------HHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH-Hh---cCCCEEEEEECCCCCC
Confidence            456899999999988776555      6678899999999999876554432 23332 22   5799999999999986


Q ss_pred             C
Q psy871          192 A  192 (249)
Q Consensus       192 ~  192 (249)
                      .
T Consensus       140 ~  140 (687)
T PRK13351        140 A  140 (687)
T ss_pred             C
Confidence            4

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.64  E-value=8e-15  Score=129.63  Aligned_cols=135  Identities=16%  Similarity=0.083  Sum_probs=79.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+-++|+|+|++++|||||+++|....-....      .+..    .           .|.+.+-      ..... ...
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~------~~~~----~-----------~g~~~~D------~~~~e-~~r   59 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHK------IGEV----H-----------DGAATMD------WMEQE-KER   59 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccc------cccc----c-----------CCccccC------CCHHH-Hhc
Confidence            34579999999999999999999752211100      0000    0           0000000      00000 011


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                      +.+.......+...+..+.+|||||+..+.....      ..+..+|++++|+|+.+....+.. ..+.. +..   .++
T Consensus        60 giti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~------~~l~~~D~~ilVvda~~g~~~~~~-~~~~~-~~~---~~~  128 (689)
T TIGR00484        60 GITITSAATTVFWKGHRINIIDTPGHVDFTVEVE------RSLRVLDGAVAVLDAVGGVQPQSE-TVWRQ-ANR---YEV  128 (689)
T ss_pred             CCCEecceEEEEECCeEEEEEECCCCcchhHHHH------HHHHHhCEEEEEEeCCCCCChhHH-HHHHH-HHH---cCC
Confidence            1222222233334467899999999987765444      567789999999999885444332 12332 222   579


Q ss_pred             cEEEEEecCCCCCC
Q psy871          179 PVLILGNKIDKHGA  192 (249)
Q Consensus       179 p~ivv~nK~Dl~~~  192 (249)
                      |+++++||+|+...
T Consensus       129 p~ivviNK~D~~~~  142 (689)
T TIGR00484       129 PRIAFVNKMDKTGA  142 (689)
T ss_pred             CEEEEEECCCCCCC
Confidence            99999999999864

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.63  E-value=2.2e-15  Score=118.97  Aligned_cols=70  Identities=19%  Similarity=0.226  Sum_probs=50.3

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+..+.+|||||+..+.....      ..+..+|++++|+|+++....... ..+.. +..   .++|.++++||+|+..
T Consensus        62 ~~~~i~liDtPG~~~f~~~~~------~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~-~~~---~~~p~iivvNK~D~~~  130 (268)
T cd04170          62 KGHKINLIDTPGYADFVGETR------AALRAADAALVVVSAQSGVEVGTE-KLWEF-ADE---AGIPRIIFINKMDRER  130 (268)
T ss_pred             CCEEEEEEECcCHHHHHHHHH------HHHHHCCEEEEEEeCCCCCCHHHH-HHHHH-HHH---cCCCEEEEEECCccCC
Confidence            356788999999877655444      556789999999999986544322 12222 222   5789999999999986


Q ss_pred             C
Q psy871          192 A  192 (249)
Q Consensus       192 ~  192 (249)
                      .
T Consensus       131 ~  131 (268)
T cd04170         131 A  131 (268)
T ss_pred             C
Confidence            5

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG1707|consensus

Probab=99.63  E-value=2.6e-15  Score=124.17  Aligned_cols=163  Identities=18%  Similarity=0.213  Sum_probs=110.5

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++.+||+|+|..|+|||||+-+|+.+++....|.+-   ..+..|                                  
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl---~~i~IP----------------------------------   48 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL---PRILIP----------------------------------   48 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccC---CccccC----------------------------------
Confidence            4678899999999999999999999988775444332   222000                                  


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--C
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--L  175 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~  175 (249)
                          .    ... .......++|++..+.-.....      ..++.+|+++++++.+++.+...+...|..+++...  .
T Consensus        49 ----a----dvt-Pe~vpt~ivD~ss~~~~~~~l~------~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~  113 (625)
T KOG1707|consen   49 ----A----DVT-PENVPTSIVDTSSDSDDRLCLR------KEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDY  113 (625)
T ss_pred             ----C----ccC-cCcCceEEEecccccchhHHHH------HHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCC
Confidence                0    000 1112277899975332222212      456789999999999999999887766666555432  2


Q ss_pred             CCCcEEEEEecCCCCCCCCH--HH-HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          176 ASCPVLILGNKIDKHGAASE--EE-IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      .++|+|+|+||+|.....+.  +. ....+..+.               .-..+++|||++-.++.|+|-+-.+.
T Consensus       114 ~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~---------------EiEtciecSA~~~~n~~e~fYyaqKa  173 (625)
T KOG1707|consen  114 HETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA---------------EIETCIECSALTLANVSELFYYAQKA  173 (625)
T ss_pred             ccCCEEEEeeccCCccccccchhHHHHHHHHHhH---------------HHHHHHhhhhhhhhhhHhhhhhhhhe
Confidence            57999999999999774332  32 444444433               11368999999999999999776554

>PRK00007 elongation factor G; Reviewed

Probab=99.62  E-value=1.9e-14  Score=127.15  Aligned_cols=72  Identities=17%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ..+..+.++||||+..|....      ...+..+|++++|+|+......++. ..+.. +..   .++|.++++||+|+.
T Consensus        72 ~~~~~~~liDTPG~~~f~~ev------~~al~~~D~~vlVvda~~g~~~qt~-~~~~~-~~~---~~~p~iv~vNK~D~~  140 (693)
T PRK00007         72 WKDHRINIIDTPGHVDFTIEV------ERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQ-ADK---YKVPRIAFVNKMDRT  140 (693)
T ss_pred             ECCeEEEEEeCCCcHHHHHHH------HHHHHHcCEEEEEEECCCCcchhhH-HHHHH-HHH---cCCCEEEEEECCCCC
Confidence            346789999999987765433      3666788999999999875433332 12333 222   678999999999998


Q ss_pred             CCC
Q psy871          191 GAA  193 (249)
Q Consensus       191 ~~~  193 (249)
                      ...
T Consensus       141 ~~~  143 (693)
T PRK00007        141 GAD  143 (693)
T ss_pred             CCC
Confidence            643

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.62  E-value=3.4e-15  Score=119.44  Aligned_cols=198  Identities=16%  Similarity=0.142  Sum_probs=103.6

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCc--cccc
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL--AQPV   95 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~--~~~~   95 (249)
                      ..+.+.|+|+|+||||||||+++|...--     ..+..+..+..+   ....+.|....|...-+.++...+.  ....
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~-----~~g~~v~vi~~D---p~s~~~~gallgd~~r~~~~~~~~~~~~r~~  124 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLI-----EQGHKVAVLAVD---PSSTRTGGSILGDKTRMERLSRHPNAFIRPS  124 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEeC---CCccccchhhhchHhHHHhhcCCCCeEEEec
Confidence            35678999999999999999999753211     111122222211   1111222222222222333222111  1111


Q ss_pred             CCcccc------eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHH
Q psy871           96 PTLHPT------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCL  169 (249)
Q Consensus        96 ~~~~~~------~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~  169 (249)
                      ++....      ....-..+......++++||+|...-...         ....+|.+++|.+....+..+.......  
T Consensus       125 ~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---------i~~~aD~vlvv~~p~~gd~iq~~k~gi~--  193 (332)
T PRK09435        125 PSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETA---------VAGMVDFFLLLQLPGAGDELQGIKKGIM--  193 (332)
T ss_pred             CCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhH---------HHHhCCEEEEEecCCchHHHHHHHhhhh--
Confidence            010000      00011122334556899999996622211         1356999999988666665554332122  


Q ss_pred             HhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhh-hcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          170 LTDESLASCPVLILGNKIDKHGAASEEEIRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       170 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                             ....++|+||+|+......+.....++ .+....       .....+..+++++||+++.|++++++.+.+++
T Consensus       194 -------E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~-------~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~  259 (332)
T PRK09435        194 -------ELADLIVINKADGDNKTAARRAAAEYRSALRLLR-------PKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR  259 (332)
T ss_pred             -------hhhheEEeehhcccchhHHHHHHHHHHHHHhccc-------ccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence                   233489999999986433332222222 111000       00012335899999999999999999998864

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=3.8e-15  Score=114.96  Aligned_cols=190  Identities=14%  Similarity=0.116  Sum_probs=114.0

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCC--CcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL--HPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      .+.+.+|+.+|+...|||||+.+|++--.......+  +.... +    ...+..+.-.+.++..               
T Consensus         7 ~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIk-L----GYAd~~i~kC~~c~~~---------------   66 (415)
T COG5257           7 IQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIK-L----GYADAKIYKCPECYRP---------------   66 (415)
T ss_pred             CCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEE-e----ccccCceEeCCCCCCC---------------
Confidence            367899999999999999999999874322111000  00000 0    1122222222222111               


Q ss_pred             CCcccceeceecccc--ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           96 PTLHPTRRVWKDYFP--AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~--~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                       ........+...-.  .--..+.++|.|||+.+.+..-      +....-|+.++|++++.++.--...+.+..+--  
T Consensus        67 -~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATML------sGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI--  137 (415)
T COG5257          67 -ECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATML------SGAALMDGALLVIAANEPCPQPQTREHLMALEI--  137 (415)
T ss_pred             -cccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHh------cchhhhcceEEEEecCCCCCCCchHHHHHHHhh--
Confidence             01111111111000  1123578999999987655444      777888999999999998776555555544311  


Q ss_pred             CCCCCcEEEEEecCCCCCCCCH-HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHGAASE-EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ..-..++++-||+|+++.... ++.++..+..           ........|++++||..+.|+|-+++.+.++|
T Consensus       138 -igik~iiIvQNKIDlV~~E~AlE~y~qIk~Fv-----------kGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         138 -IGIKNIIIVQNKIDLVSRERALENYEQIKEFV-----------KGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             -hccceEEEEecccceecHHHHHHHHHHHHHHh-----------cccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence             145779999999999873222 2222222211           12334558999999999999999999999876

>PRK12739 elongation factor G; Reviewed

Probab=99.61  E-value=2.4e-14  Score=126.53  Aligned_cols=134  Identities=15%  Similarity=0.116  Sum_probs=78.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +.++|+++|++++|||||+++|+...-...  .+    +.+    .           .| ++.+...-    .+.  ..+
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~--~~----~~v----~-----------~~-~~~~D~~~----~E~--~rg   58 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSH--KI----GEV----H-----------DG-AATMDWME----QEQ--ERG   58 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCcc--cc----ccc----c-----------CC-ccccCCCh----hHh--hcC
Confidence            457999999999999999999974211100  00    001    0           00 00000000    000  111


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                      .+.......+...+..+.++||||+..|....      ...+..+|++++|+|+.+....++. ..+.. +..   .++|
T Consensus        59 iti~~~~~~~~~~~~~i~liDTPG~~~f~~e~------~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~-~~~---~~~p  127 (691)
T PRK12739         59 ITITSAATTCFWKGHRINIIDTPGHVDFTIEV------ERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQ-ADK---YGVP  127 (691)
T ss_pred             CCccceeEEEEECCEEEEEEcCCCHHHHHHHH------HHHHHHhCeEEEEEeCCCCCCHHHH-HHHHH-HHH---cCCC
Confidence            12222222233356789999999987765433      3667889999999999875433322 12222 222   6799


Q ss_pred             EEEEEecCCCCCC
Q psy871          180 VLILGNKIDKHGA  192 (249)
Q Consensus       180 ~ivv~nK~Dl~~~  192 (249)
                      +++++||+|+...
T Consensus       128 ~iv~iNK~D~~~~  140 (691)
T PRK12739        128 RIVFVNKMDRIGA  140 (691)
T ss_pred             EEEEEECCCCCCC
Confidence            9999999999864

>KOG0458|consensus

Probab=99.61  E-value=5.2e-16  Score=128.24  Aligned_cols=188  Identities=20%  Similarity=0.201  Sum_probs=117.0

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ++.+..++++|+.++|||||+.+|+..--.....+......              .....||.++..++......+.. .
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~--------------es~~~Gk~Sf~yawiLDeT~eER-e  238 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLER--------------ESKNLGKSSFAYAWILDETKEER-E  238 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHH--------------HHHhcCCcceeeeEEeccchhhh-h
Confidence            45778999999999999999999985322211111111111              12445666666666555443222 2


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHhccC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLTDES  174 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~  174 (249)
                      .+.+-......++.....+.+.|+||+..|....-      .....+|+.++|+|++..   .+|. ......++.....
T Consensus       239 rGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi------~g~sqaD~avLvvd~s~~~FE~gfd-~~gQtrEha~llr  311 (603)
T KOG0458|consen  239 RGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMI------SGASQADVAVLVVDASTGEFESGFD-PGGQTREHALLLR  311 (603)
T ss_pred             cceeEEeeeEEEecCceeEEEecCCCccccchhhh------ccccccceEEEEEECCcchhhhccC-CCCchHHHHHHHH
Confidence            22233333455666777899999999988877666      778899999999999873   3443 2222222221111


Q ss_pred             -CCCCcEEEEEecCCCCC--CCC----HHHHHHHh-hhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          175 -LASCPVLILGNKIDKHG--AAS----EEEIRQYF-GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       175 -~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                       +.-..++|++||+|+++  +..    ...+..++ +.++            +....+.++|||+.+|+|+..
T Consensus       312 ~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~g------------f~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  312 SLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCG------------FKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             HcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcC------------cccCCcceEecccccCCcccc
Confidence             13467899999999987  212    23334444 3333            344557899999999999843

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.61  E-value=3.6e-16  Score=118.45  Aligned_cols=193  Identities=17%  Similarity=0.171  Sum_probs=109.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc--ccC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ--PVP   96 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~--~~~   96 (249)
                      .+.++|+|.|+||+|||||+++|...-.     ..+..+..+-++|.+   .+.|...-|...=++.+..++-..  ..+
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~-----~~g~~VaVlAVDPSS---p~tGGAlLGDRiRM~~~~~d~~vfIRS~a   98 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELR-----ERGKRVAVLAVDPSS---PFTGGALLGDRIRMQELSRDPGVFIRSMA   98 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHH-----HTT--EEEEEE-GGG---GCC---SS--GGGCHHHHTSTTEEEEEE-
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHh-----hcCCceEEEEECCCC---CCCCCcccccHHHhcCcCCCCCEEEeecC
Confidence            4678999999999999999999975321     124444555443333   245556666655555555433221  111


Q ss_pred             Ccccc------eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHH
Q psy871           97 TLHPT------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL  170 (249)
Q Consensus        97 ~~~~~------~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~  170 (249)
                      ..+..      ....-..++.....++++.|.|....+-..         ...+|.+++|+-+...+..+.++.-+.++ 
T Consensus        99 tRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---------~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-  168 (266)
T PF03308_consen   99 TRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---------ADMADTVVLVLVPGLGDEIQAIKAGIMEI-  168 (266)
T ss_dssp             --SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---------HTTSSEEEEEEESSTCCCCCTB-TTHHHH-
T ss_pred             cCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---------HHhcCeEEEEecCCCccHHHHHhhhhhhh-
Confidence            11110      011112234455668889998854322222         25799999999999888888776666665 


Q ss_pred             hccCCCCCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          171 TDESLASCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       171 ~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                              +-++|+||+|+.. +....++...+.....          ....+..|++.+||.++.|++++++.+.++
T Consensus       169 --------aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~----------~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  169 --------ADIFVVNKADRPGADRTVRDLRSMLHLLRE----------REDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             ---------SEEEEE--SHHHHHHHHHHHHHHHHHCST----------SCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             --------ccEEEEeCCChHHHHHHHHHHHHHHhhccc----------cccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence                    4489999999644 2223444544443321          123355799999999999999999999875

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.60  E-value=3.9e-14  Score=106.39  Aligned_cols=102  Identities=13%  Similarity=0.199  Sum_probs=67.1

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA-  192 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-  192 (249)
                      ...+++++.|..-......         ..+|.++.|+|+.+.+.....  ....       -...-++++||+|+.+. 
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---------~l~~~~i~vvD~~~~~~~~~~--~~~q-------i~~ad~~~~~k~d~~~~~  153 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---------ELADLTIFVIDVAAGDKIPRK--GGPG-------ITRSDLLVINKIDLAPMV  153 (199)
T ss_pred             CCEEEEECCCCCcccccch---------hhhCcEEEEEEcchhhhhhhh--hHhH-------hhhccEEEEEhhhccccc
Confidence            4567789988421111111         236789999999986553210  0001       12334899999999863 


Q ss_pred             -CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          193 -ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ...+.+.+.++.+.               ...+++++||++|+|++++++++.++.
T Consensus       154 ~~~~~~~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       154 GADLGVMERDAKKMR---------------GEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             cccHHHHHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence             34555566666544               347899999999999999999998763

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.59  E-value=4.1e-14  Score=116.54  Aligned_cols=107  Identities=19%  Similarity=0.162  Sum_probs=65.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++|+++|.||||||||+|+|++.++.   ++.+|+.+..+...++.          + +....+- .+.         .+
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~----------~-~~~~r~~-~~~---------~~   60 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRV----------E-CPCKELG-VKC---------NP   60 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeecc----------C-Cchhhhh-hhh---------cc
Confidence            58999999999999999999987764   35566666666552110          0 0011110 000         00


Q ss_pred             ccceeceecccc-ccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECC
Q psy871           99 HPTRRVWKDYFP-AVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTS  154 (249)
Q Consensus        99 ~~~~~~~~~~~~-~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~  154 (249)
                      ..  .   .... .....+.++|+||...- ........+++..++.+|++++|+|+.
T Consensus        61 ~~--~---~~~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         61 RN--G---KCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cc--c---cccCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            00  0   0001 12245889999996432 222334567888899999999999996

>KOG1191|consensus

Probab=99.59  E-value=8.1e-15  Score=119.15  Aligned_cols=174  Identities=15%  Similarity=0.081  Sum_probs=103.8

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .-++.+.|+|+|+||+|||||+|+|...+.+...|..+.+.+.                                     
T Consensus       264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDa-------------------------------------  306 (531)
T KOG1191|consen  264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDA-------------------------------------  306 (531)
T ss_pred             HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhh-------------------------------------
Confidence            3356689999999999999999999887766555444444443                                     


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchh-hhhhHH-H-HhhhhccccccceEEEEEECCChhhhHhh--HHHHHHHHh
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKS-E-LQCLLTDESLASSIVFLVDTSDRERFEES--KSELQCLLT  171 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~-~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~~  171 (249)
                              ....++-....+.+.||+|..+ -....+ . ....-..+.++|++++|+|+..-..-++.  .+.+...-.
T Consensus       307 --------iea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~  378 (531)
T KOG1191|consen  307 --------IEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGV  378 (531)
T ss_pred             --------heeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhcc
Confidence                    3344444556789999999654 111111 1 12222456789999999999442222222  122222210


Q ss_pred             -----ccCCCCCcEEEEEecCCCCCCCCHHH--HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871          172 -----DESLASCPVLILGNKIDKHGAASEEE--IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL  244 (249)
Q Consensus       172 -----~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  244 (249)
                           .......|++++.||.|+........  ...+....             -....-...++|+++++|+++|...|
T Consensus       379 g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~-------------~~~~~~i~~~vs~~tkeg~~~L~~al  445 (531)
T KOG1191|consen  379 GLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAE-------------GRSVFPIVVEVSCTTKEGCERLSTAL  445 (531)
T ss_pred             ceEEEeccccccceEEEechhhccCccccccCCceeccccc-------------cCcccceEEEeeechhhhHHHHHHHH
Confidence                 00112378999999999976411111  11111110             00122345569999999999999988


Q ss_pred             hhhc
Q psy871          245 ANYI  248 (249)
Q Consensus       245 ~~~i  248 (249)
                      .+.+
T Consensus       446 l~~~  449 (531)
T KOG1191|consen  446 LNIV  449 (531)
T ss_pred             HHHH
Confidence            7754

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.59  E-value=1.3e-14  Score=96.49  Aligned_cols=103  Identities=19%  Similarity=0.195  Sum_probs=79.9

Q ss_pred             EEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHH
Q psy871          118 LVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEE  197 (249)
Q Consensus       118 v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  197 (249)
                      .+||||  +|.+...++..++.....+|++++|-.++++.+....  .+..+      ..+|+|-|++|.|+.++...+.
T Consensus        41 ~IDTPG--Ey~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p--~f~~~------~~k~vIgvVTK~DLaed~dI~~  110 (148)
T COG4917          41 DIDTPG--EYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP--GFLDI------GVKKVIGVVTKADLAEDADISL  110 (148)
T ss_pred             ccCCch--hhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc--ccccc------cccceEEEEecccccchHhHHH
Confidence            368988  4566667777777788899999999999997554332  11122      4577999999999997667777


Q ss_pred             HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          198 IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      .++++...+                --++|.+|+.+..|+++++.+|..
T Consensus       111 ~~~~L~eaG----------------a~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         111 VKRWLREAG----------------AEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             HHHHHHHcC----------------CcceEEEeccCcccHHHHHHHHHh
Confidence            777777665                257999999999999999999875

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.58  E-value=1.7e-13  Score=103.27  Aligned_cols=164  Identities=13%  Similarity=0.092  Sum_probs=92.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ++|+++|.+|||||||+|+|++...........                                            ..+
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~--------------------------------------------~~T   36 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSAS--------------------------------------------SVT   36 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCC--------------------------------------------Ccc
Confidence            479999999999999999998765431110000                                            000


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhh----hHH-HHhhhhccccccceEEEEEECCChhh-hHhhHHHHHHHHhccCC
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEE----SKS-ELQCLLTDESLASSIVFLVDTSDRER-FEESKSELQCLLTDESL  175 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~----~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~  175 (249)
                      ...........+..+.++||||......    ... ............|++++|+++.+... ...+.+.+.++...  .
T Consensus        37 ~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~  114 (196)
T cd01852          37 KTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--K  114 (196)
T ss_pred             cccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--H
Confidence            0000000111345789999999665421    122 22223334577899999999987211 11222233332211  0


Q ss_pred             CCCcEEEEEecCCCCCCCCH--------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEee-----eccccchHHHHH
Q psy871          176 ASCPVLILGNKIDKHGAASE--------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCS-----VLMRQGYGDGFR  242 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-----a~~g~gv~~l~~  242 (249)
                      .-.++++++|++|.......        ..+...++.++                 -.++..+     +..+.++++|++
T Consensus       115 ~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~-----------------~r~~~f~~~~~~~~~~~q~~~Ll~  177 (196)
T cd01852         115 VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG-----------------GRYVAFNNKAKGEEQEQQVKELLA  177 (196)
T ss_pred             hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC-----------------CeEEEEeCCCCcchhHHHHHHHHH
Confidence            12689999999998764332        33344444333                 2333333     567889999999


Q ss_pred             HHhhhc
Q psy871          243 WLANYI  248 (249)
Q Consensus       243 ~l~~~i  248 (249)
                      .+.+.+
T Consensus       178 ~i~~~~  183 (196)
T cd01852         178 KVESMV  183 (196)
T ss_pred             HHHHHH
Confidence            887654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1144|consensus

Probab=99.57  E-value=2.7e-14  Score=120.83  Aligned_cols=191  Identities=18%  Similarity=0.189  Sum_probs=116.9

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ..|.+.+||+|+..+|||-|+..+.+.++....              .++...-+|........+..+...         
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqege--------------aggitqqIgAt~fp~~ni~e~tk~---------  528 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGE--------------AGGITQQIGATYFPAENIREKTKE---------  528 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhcccccccc--------------ccceeeeccccccchHHHHHHHHH---------
Confidence            357889999999999999999999887655211              222333334444333333222110         


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                         .......  +..--.++++||||++.|..++.      ++...||.+|+|+|+-+.-..+.+.  -..+++.   .+
T Consensus       529 ---~~~~~K~--~~kvPg~lvIdtpghEsFtnlRs------rgsslC~~aIlvvdImhGlepqtiE--Si~lLR~---rk  592 (1064)
T KOG1144|consen  529 ---LKKDAKK--RLKVPGLLVIDTPGHESFTNLRS------RGSSLCDLAILVVDIMHGLEPQTIE--SINLLRM---RK  592 (1064)
T ss_pred             ---HHhhhhh--hcCCCeeEEecCCCchhhhhhhh------ccccccceEEEEeehhccCCcchhH--HHHHHHh---cC
Confidence               0000000  01112588999999999999999      7778999999999998853333331  1222332   78


Q ss_pred             CcEEEEEecCCCCCC------------------CCHHHHHHHhhhcccccCcc-----cCCCCCCCCCceeEEEeeeccc
Q psy871          178 CPVLILGNKIDKHGA------------------ASEEEIRQYFGLYGLTTGKV-----ATPRSEMSGRPIELFMCSVLMR  234 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~Sa~~g  234 (249)
                      .|+||.+||+|..-.                  ....++...++.+...+...     ..+-.......+.++|+||.+|
T Consensus       593 tpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG  672 (1064)
T KOG1144|consen  593 TPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG  672 (1064)
T ss_pred             CCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC
Confidence            999999999996431                  01122222222222111111     1122223335689999999999


Q ss_pred             cchHHHHHHHhhh
Q psy871          235 QGYGDGFRWLANY  247 (249)
Q Consensus       235 ~gv~~l~~~l~~~  247 (249)
                      +|+.+|+-+|.+.
T Consensus       673 eGipdLl~llv~l  685 (1064)
T KOG1144|consen  673 EGIPDLLLLLVQL  685 (1064)
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999998875

>PTZ00258 GTP-binding protein; Provisional

Probab=99.57  E-value=7.9e-14  Score=113.66  Aligned_cols=112  Identities=19%  Similarity=0.112  Sum_probs=72.5

Q ss_pred             hhcccccceecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHh
Q psy871           11 VLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLK   87 (249)
Q Consensus        11 ~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~   87 (249)
                      -.-+++-.....+|+|+|.||||||||+|+|++....   ++.+|+.+..+.+.++            ...-..+. .+.
T Consensus        11 ~~~~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~------------d~r~~~l~-~~~   77 (390)
T PTZ00258         11 KKVLLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVP------------DERFDWLC-KHF   77 (390)
T ss_pred             cchhhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecc------------cchhhHHH-HHc
Confidence            3445666677789999999999999999999887654   4666777766665211            00000000 000


Q ss_pred             cCCcccccCCcccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECC
Q psy871           88 DDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTS  154 (249)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~  154 (249)
                                         .--...+..+.++|+||...- .........++..++.+|++++|+|+.
T Consensus        78 -------------------~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         78 -------------------KPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             -------------------CCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                               000122345889999996532 222334567888899999999999984

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.55  E-value=2.4e-14  Score=110.02  Aligned_cols=199  Identities=17%  Similarity=0.162  Sum_probs=123.5

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCc--cc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL--AQ   93 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~--~~   93 (249)
                      ....+.++|+|+|+||||||||+.+|...-     ...+..+..+-+   ++...+.|...-|...-++++..++-  .-
T Consensus        46 p~tG~a~viGITG~PGaGKSTli~~L~~~l-----~~~G~rVaVlAV---DPSSp~TGGsiLGDRiRM~~~~~~~~vFiR  117 (323)
T COG1703          46 PRTGNAHVIGITGVPGAGKSTLIEALGREL-----RERGHRVAVLAV---DPSSPFTGGSILGDRIRMQRLAVDPGVFIR  117 (323)
T ss_pred             hcCCCCcEEEecCCCCCchHHHHHHHHHHH-----HHCCcEEEEEEE---CCCCCCCCccccccHhhHHhhccCCCeEEe
Confidence            344678899999999999999999996432     122333333432   23334556666676666666664332  22


Q ss_pred             ccCCcccceece------eccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHH
Q psy871           94 PVPTLHPTRRVW------KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQ  167 (249)
Q Consensus        94 ~~~~~~~~~~~~------~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~  167 (249)
                      +.+..+..-...      -..++...+.++++.|.|....+....         +-+|.+++|.-+.-.+..+.++.-+.
T Consensus       118 s~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~---------~~aDt~~~v~~pg~GD~~Q~iK~Gim  188 (323)
T COG1703         118 SSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA---------NMADTFLVVMIPGAGDDLQGIKAGIM  188 (323)
T ss_pred             ecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh---------hhcceEEEEecCCCCcHHHHHHhhhh
Confidence            222222211111      122345556689999998654333222         57999999998888777776655444


Q ss_pred             HHHhccCCCCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          168 CLLTDESLASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       168 ~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      +         +.-++|+||.|.... ....++...++...        +......+..+++.+||..|+|++++++.+.+
T Consensus       189 E---------iaDi~vINKaD~~~A~~a~r~l~~al~~~~--------~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~  251 (323)
T COG1703         189 E---------IADIIVINKADRKGAEKAARELRSALDLLR--------EVWRENGWRPPVVTTSALEGEGIDELWDAIED  251 (323)
T ss_pred             h---------hhheeeEeccChhhHHHHHHHHHHHHHhhc--------ccccccCCCCceeEeeeccCCCHHHHHHHHHH
Confidence            4         455899999996442 12223333333321        11224456689999999999999999999988


Q ss_pred             hc
Q psy871          247 YI  248 (249)
Q Consensus       247 ~i  248 (249)
                      +.
T Consensus       252 h~  253 (323)
T COG1703         252 HR  253 (323)
T ss_pred             HH
Confidence            64

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.55  E-value=5.3e-14  Score=106.81  Aligned_cols=103  Identities=14%  Similarity=0.119  Sum_probs=64.7

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      +..+++++|+|.-....         ......+..+.|+|+.+.+.....   ...      ....|.++++||+|+.+.
T Consensus       102 ~~d~IiIEt~G~l~~~~---------~~~~~~~~~i~Vvd~~~~d~~~~~---~~~------~~~~a~iiv~NK~Dl~~~  163 (207)
T TIGR00073       102 DIDLLFIENVGNLVCPA---------DFDLGEHMRVVLLSVTEGDDKPLK---YPG------MFKEADLIVINKADLAEA  163 (207)
T ss_pred             CCCEEEEecCCCcCCCc---------ccccccCeEEEEEecCcccchhhh---hHh------HHhhCCEEEEEHHHcccc
Confidence            34678899998311110         111234555678888765432110   111      135788999999999763


Q ss_pred             C--CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          193 A--SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       193 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .  ...+..+.++...               +..+++++||++|.|++++++++.++.
T Consensus       164 ~~~~~~~~~~~l~~~~---------------~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       164 VGFDVEKMKADAKKIN---------------PEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             chhhHHHHHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            2  2334444444332               347899999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1673|consensus

Probab=99.54  E-value=7.8e-14  Score=96.31  Aligned_cols=157  Identities=19%  Similarity=0.194  Sum_probs=108.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +.||.++|++..|||||+-...+++.. ....+.+...-..                                       
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdk---------------------------------------   60 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDK---------------------------------------   60 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceee---------------------------------------
Confidence            568999999999999998887665443 1111222111111                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ..++.+.+..+.+||..|++++.....      -.-+.+-+++++||.++++++..+.+|+.+... .+...+|
T Consensus        61 ------t~~i~~t~IsfSIwdlgG~~~~~n~lP------iac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~-~NktAiP  127 (205)
T KOG1673|consen   61 ------TVSIRGTDISFSIWDLGGQREFINMLP------IACKDSVAILFMFDLTRRSTLNSIKEWYRQARG-LNKTAIP  127 (205)
T ss_pred             ------EEEecceEEEEEEEecCCcHhhhccCc------eeecCcEEEEEEEecCchHHHHHHHHHHHHHhc-cCCccce
Confidence                  123456677889999999987766555      333567788999999999999999988888643 3334455


Q ss_pred             EEEEEecCCCCCCCCHH-------HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          180 VLILGNKIDKHGAASEE-------EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                       ++|++|-|+.-+.+++       +.+.+.+..+                 .+.|+||+....|+..+|+.+..+
T Consensus       128 -ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-----------------AsL~F~Sts~sINv~KIFK~vlAk  184 (205)
T KOG1673|consen  128 -ILVGTKYDLFIDLPPELQETISRQARKYAKVMN-----------------ASLFFCSTSHSINVQKIFKIVLAK  184 (205)
T ss_pred             -EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-----------------CcEEEeeccccccHHHHHHHHHHH
Confidence             5579999985533332       2233333333                 789999999999999999876544

>PRK12740 elongation factor G; Reviewed

Probab=99.53  E-value=2.5e-13  Score=120.20  Aligned_cols=71  Identities=18%  Similarity=0.180  Sum_probs=51.6

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ..+..+.++||||+..+.....      ..+..+|++++|+|++......... .+... ..   .++|+++++||+|+.
T Consensus        57 ~~~~~i~liDtPG~~~~~~~~~------~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~-~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         57 WKGHKINLIDTPGHVDFTGEVE------RALRVLDGAVVVVCAVGGVEPQTET-VWRQA-EK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             ECCEEEEEEECCCcHHHHHHHH------HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHH-HH---cCCCEEEEEECCCCC
Confidence            3467799999999987655444      5567899999999998865544332 22322 22   579999999999987


Q ss_pred             CC
Q psy871          191 GA  192 (249)
Q Consensus       191 ~~  192 (249)
                      ..
T Consensus       126 ~~  127 (668)
T PRK12740        126 GA  127 (668)
T ss_pred             CC
Confidence            64

>cd01850 CDC_Septin CDC/Septin

Probab=99.52  E-value=3.3e-13  Score=106.50  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=24.3

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA   47 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~   47 (249)
                      .++|+|+|++|+|||||+|+|.+..+.
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~   30 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLI   30 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCc
Confidence            569999999999999999999887655

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.52  E-value=1.7e-13  Score=111.12  Aligned_cols=112  Identities=18%  Similarity=0.156  Sum_probs=84.9

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      ....+.++|||||-.|.--..      +++..|-+.++|+|++..-..+.+.+.+..+  +   .+.-++-|+||+||+.
T Consensus        74 ~~Y~lnlIDTPGHVDFsYEVS------RSLAACEGalLvVDAsQGveAQTlAN~YlAl--e---~~LeIiPViNKIDLP~  142 (603)
T COG0481          74 ETYVLNLIDTPGHVDFSYEVS------RSLAACEGALLVVDASQGVEAQTLANVYLAL--E---NNLEIIPVLNKIDLPA  142 (603)
T ss_pred             CEEEEEEcCCCCccceEEEeh------hhHhhCCCcEEEEECccchHHHHHHHHHHHH--H---cCcEEEEeeecccCCC
Confidence            456789999999988865555      6678899999999999976666665555544  2   6788999999999988


Q ss_pred             CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          192 AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      . ..+.+.+.++..-             .......+.||||+|.|++++++.+.+++
T Consensus       143 A-dpervk~eIe~~i-------------Gid~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         143 A-DPERVKQEIEDII-------------GIDASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             C-CHHHHHHHHHHHh-------------CCCcchheeEecccCCCHHHHHHHHHhhC
Confidence            5 4444444444321             12235689999999999999999998865

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.48  E-value=5.3e-13  Score=101.50  Aligned_cols=172  Identities=16%  Similarity=0.166  Sum_probs=104.5

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ..++.+++++|..|+|||||+|+|..++.....                    .+|.                      +
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--------------------~vg~----------------------~   73 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS--------------------KVGV----------------------G   73 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceee--------------------eccc----------------------C
Confidence            456778899999999999999999865544211                    0110                      1


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhH-HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK-SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      ...+...+ ..+.  ...+.+||+||.+.-..-. +.-..+...+...|.+++++++.+++---+. ..+..++..  ..
T Consensus        74 t~~~~~~~-~~~~--~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~--~~  147 (296)
T COG3596          74 TDITTRLR-LSYD--GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIIL--GL  147 (296)
T ss_pred             CCchhhHH-hhcc--ccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHh--cc
Confidence            11111111 1122  2569999999977533332 2233455778889999999999886432222 244444332  24


Q ss_pred             CCcEEEEEecCCCCCCC---------CHHHHHHHh----hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871          177 SCPVLILGNKIDKHGAA---------SEEEIRQYF----GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW  243 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~---------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  243 (249)
                      +.|+++++|.+|.....         ....+.+++    ....           ......-|++.+|.+.+.|++.+...
T Consensus       148 ~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~-----------~~~q~V~pV~~~~~r~~wgl~~l~~a  216 (296)
T COG3596         148 DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG-----------RLFQEVKPVVAVSGRLPWGLKELVRA  216 (296)
T ss_pred             CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH-----------HHHhhcCCeEEeccccCccHHHHHHH
Confidence            58999999999975421         111111111    1111           01112357889999999999999999


Q ss_pred             Hhhhc
Q psy871          244 LANYI  248 (249)
Q Consensus       244 l~~~i  248 (249)
                      +.+.+
T Consensus       217 li~~l  221 (296)
T COG3596         217 LITAL  221 (296)
T ss_pred             HHHhC
Confidence            88754

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.48  E-value=6.7e-13  Score=119.72  Aligned_cols=117  Identities=21%  Similarity=0.210  Sum_probs=73.4

Q ss_pred             EEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          115 IVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       115 ~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+.+|||||++.|...+.      ..+..+|++++|+|+++   +.++..+    . ++..   .++|+++++||+|+..
T Consensus       527 ~i~fiDTPGhe~F~~lr~------~g~~~aDivlLVVDa~~Gi~~qT~e~I----~-~lk~---~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        527 GLLFIDTPGHEAFTSLRK------RGGSLADLAVLVVDINEGFKPQTIEAI----N-ILRQ---YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             cEEEEECCCcHHHHHHHH------hhcccCCEEEEEEECcccCCHhHHHHH----H-HHHH---cCCCEEEEEECCCCcc
Confidence            488999999999977766      45678999999999987   3333322    2 2222   4689999999999964


Q ss_pred             CCC------------------HHHHHHHhhhcc---cccCccc---CCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          192 AAS------------------EEEIRQYFGLYG---LTTGKVA---TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       192 ~~~------------------~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ...                  .+++...+..+.   ...+...   .... .....++++++||++|+|+++|+.+|..
T Consensus       593 ~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~-d~~~~v~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        593 GWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQ-DFTRTVAIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhh-hcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            211                  111111110000   0000000   0011 1134689999999999999999988753

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.47  E-value=3.2e-13  Score=108.10  Aligned_cols=111  Identities=15%  Similarity=0.113  Sum_probs=66.2

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      +..+..++++||+|.....  .       .....+|.++++.+....+.+..   ....+      ..+|.++++||+|+
T Consensus       123 ~~~g~D~viidT~G~~~~e--~-------~i~~~aD~i~vv~~~~~~~el~~---~~~~l------~~~~~ivv~NK~Dl  184 (300)
T TIGR00750       123 DAAGYDVIIVETVGVGQSE--V-------DIANMADTFVVVTIPGTGDDLQG---IKAGL------MEIADIYVVNKADG  184 (300)
T ss_pred             HhCCCCEEEEeCCCCchhh--h-------HHHHhhceEEEEecCCccHHHHH---HHHHH------hhhccEEEEEcccc
Confidence            3345679999999954211  1       12456788888865443332222   22222      46788999999999


Q ss_pred             CCCCCHHHHHHHh----hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          190 HGAASEEEIRQYF----GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       190 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ............+    ..+.          .....+..+++++||+++.|++++++++.+++
T Consensus       185 ~~~~~~~~~~~~~~~~l~~l~----------~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       185 EGATNVTIARLMLALALEEIR----------RREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             cchhHHHHHHHHHHHHHhhcc----------ccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            7643322211111    1111          00011224699999999999999999998753

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.46  E-value=2.2e-12  Score=104.11  Aligned_cols=101  Identities=22%  Similarity=0.211  Sum_probs=66.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+|+++|.||||||||+|+|++....   ++.+|+.+..+.+.++.          +   ....+..+.         .+
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d----------~---r~~~l~~~~---------~p   60 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPD----------P---RLDKLAEIV---------KP   60 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEecc----------c---cchhhHHhc---------CC
Confidence            68999999999999999999998743   46778887777763210          0   000000000         00


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTS  154 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~  154 (249)
                      .          ......+.++|+||...- .........++..++.+|++++|+|+.
T Consensus        61 ~----------~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         61 K----------KIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             c----------cccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            0          112345889999996532 222335567889999999999999984

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.46  E-value=1.5e-13  Score=107.37  Aligned_cols=57  Identities=21%  Similarity=0.215  Sum_probs=43.3

Q ss_pred             CCCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          176 ASCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ...+-++|+||+|+...  ...+++.+.++...               +..+++++||++|+|++++++||.++
T Consensus       229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~ln---------------p~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        229 FAAASLMLLNKVDLLPYLNFDVEKCIACAREVN---------------PEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhC---------------CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            46788999999999763  22444444444433               45889999999999999999999874

>KOG4423|consensus

Probab=99.46  E-value=5.7e-15  Score=105.00  Aligned_cols=160  Identities=19%  Similarity=0.153  Sum_probs=113.2

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ++.|+|..|+|||+++.+....+++. +..|++....--                                         
T Consensus        27 k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalk-----------------------------------------   65 (229)
T KOG4423|consen   27 KVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALK-----------------------------------------   65 (229)
T ss_pred             hhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHH-----------------------------------------
Confidence            88999999999999999987766652 222333211110                                         


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC---CC
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA---SC  178 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~  178 (249)
                      .-.|.   ...-..+.+||..|+++|.....      -+|+.+++..+|||+++..+|+....|.+++-....+.   -.
T Consensus        66 Vl~wd---d~t~vRlqLwdIagQerfg~mtr------Vyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv  136 (229)
T KOG4423|consen   66 VLQWD---DKTIVRLQLWDIAGQERFGNMTR------VYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPV  136 (229)
T ss_pred             HhccC---hHHHHHHHHhcchhhhhhcceEE------EEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcc
Confidence            00010   11122367899999999988887      78899999999999999999999888888875433332   37


Q ss_pred             cEEEEEecCCCCCCCC---HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGAAS---EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++..||||......   ...+.++.+.-                ....++++|+|.+.+++|..+.|.+++
T Consensus       137 ~~vllankCd~e~~a~~~~~~~~d~f~ken----------------gf~gwtets~Kenkni~Ea~r~lVe~~  193 (229)
T KOG4423|consen  137 PCVLLANKCDQEKSAKNEATRQFDNFKKEN----------------GFEGWTETSAKENKNIPEAQRELVEKI  193 (229)
T ss_pred             hheeccchhccChHhhhhhHHHHHHHHhcc----------------CccceeeeccccccChhHHHHHHHHHH
Confidence            8999999999865322   23344443332                235799999999999999999888764

>cd01882 BMS1 Bms1

Probab=99.43  E-value=2.2e-12  Score=99.09  Aligned_cols=147  Identities=14%  Similarity=0.117  Sum_probs=85.6

Q ss_pred             cccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      .+...++..|+++|++|+|||||+++|.+.....   +...                    ..                 
T Consensus        33 ~~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~---~~~~--------------------~~-----------------   72 (225)
T cd01882          33 TPEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ---NISD--------------------IK-----------------   72 (225)
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHHhhcccC---cccc--------------------cc-----------------
Confidence            3556778899999999999999999996531110   0000                    00                 


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                        +.   ...    ....+..+.++|+||..  .       ..+...+.+|++++|+|++........  .+...+..  
T Consensus        73 --g~---i~i----~~~~~~~i~~vDtPg~~--~-------~~l~~ak~aDvVllviDa~~~~~~~~~--~i~~~l~~--  130 (225)
T cd01882          73 --GP---ITV----VTGKKRRLTFIECPNDI--N-------AMIDIAKVADLVLLLIDASFGFEMETF--EFLNILQV--  130 (225)
T ss_pred             --cc---EEE----EecCCceEEEEeCCchH--H-------HHHHHHHhcCEEEEEEecCcCCCHHHH--HHHHHHHH--
Confidence              10   000    11234567899999843  1       222345789999999999875433322  33333333  


Q ss_pred             CCCCcEE-EEEecCCCCCCCC-HHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEeeecccc
Q psy871          175 LASCPVL-ILGNKIDKHGAAS-EEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMCSVLMRQ  235 (249)
Q Consensus       175 ~~~~p~i-vv~nK~Dl~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  235 (249)
                       .+.|.+ +|+||+|+.+... .+++...++. +..           ......+++++||++..
T Consensus       131 -~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         131 -HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWT-----------EVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             -cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHH-----------hhCCCCcEEEEeeccCC
Confidence             467854 5999999975321 2333333322 110           01134789999999863

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.43  E-value=1.2e-12  Score=102.67  Aligned_cols=179  Identities=21%  Similarity=0.165  Sum_probs=106.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCC---CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV---PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      +...+++-+|...-|||||+.||+...-....   .++......         ..    ...++-.+  ++.-..+. ..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~---------~~----t~g~~~D~--ALLvDGL~-AE   67 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKR---------KG----TQGEKIDL--ALLVDGLE-AE   67 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhccccc---------cc----CCCCccch--hhhhhhhH-HH
Confidence            34569999999999999999999865322111   011111100         00    00111111  11111110 00


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDES  174 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~  174 (249)
                      ...+-+.+..-.++......+++-|||||+.|..+..      ....-||+.++++|+...-.-+.-+. .+..++    
T Consensus        68 REQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMa------TGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL----  137 (431)
T COG2895          68 REQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMA------TGASTADLAILLVDARKGVLEQTRRHSFIASLL----  137 (431)
T ss_pred             HhcCceEEEEeeecccccceEEEecCCcHHHHhhhhh------cccccccEEEEEEecchhhHHHhHHHHHHHHHh----
Confidence            1344455666667777788899999999999887776      77788999999999966321111110 122221    


Q ss_pred             CCCCcEEEEEecCCCCC--C----CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871          175 LASCPVLILGNKIDKHG--A----ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG  238 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  238 (249)
                       .-..+++.+||+||++  +    ....+...+...++              .....++|+||+.|.|+-
T Consensus       138 -GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~--------------~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         138 -GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLG--------------LKDVRFIPISALLGDNVV  192 (431)
T ss_pred             -CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcC--------------CCcceEEechhccCCccc
Confidence             3356899999999987  1    12233444444433              445789999999999983

>KOG0463|consensus

Probab=99.43  E-value=3.6e-13  Score=106.33  Aligned_cols=204  Identities=17%  Similarity=0.150  Sum_probs=131.4

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCC----CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ----PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +.+++|||-..+|||||+.-|+.++...    ...........+    .+++..-+|.+..|-...=+       ....|
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEi----ESGRTSSVGNDILGFD~~GN-------vVNKP  201 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEI----ESGRTSSVGNDILGFDVHGN-------VVNKP  201 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhc----ccCccccccccceeeccccc-------cccCC
Confidence            6799999999999999999999877652    222233344444    55555555555544321100       01122


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      ..+...--|....+++...+.++|.+|++.|-...-    |-..-+..|.-++++.++... ..    .-++.+......
T Consensus       202 D~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTv----FGMTGH~PDf~MLMiGaNaGI-iG----mTKEHLgLALaL  272 (641)
T KOG0463|consen  202 DPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTV----FGMTGHMPDFTMLMIGANAGI-IG----MTKEHLGLALAL  272 (641)
T ss_pred             CCCCCcccceeeccccceeEEEEeccchhhhhheee----eccccCCCCceEEEecccccc-ee----ccHHhhhhhhhh
Confidence            334445557777788888899999999998865543    223346789999999887631 11    112222222226


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccC-------------CCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVAT-------------PRSEMSGRPIELFMCSVLMRQGYGDGFRW  243 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  243 (249)
                      ..|+++|++|+|++.....++-...+..+....++...             .......+-+|+|.+|..+|.|++-+...
T Consensus       273 ~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF  352 (641)
T KOG0463|consen  273 HVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF  352 (641)
T ss_pred             cCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence            89999999999999876666655555554444444432             12333346689999999999999877655


Q ss_pred             H
Q psy871          244 L  244 (249)
Q Consensus       244 l  244 (249)
                      |
T Consensus       353 L  353 (641)
T KOG0463|consen  353 L  353 (641)
T ss_pred             H
Confidence            5

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=2.3e-12  Score=102.55  Aligned_cols=103  Identities=22%  Similarity=0.197  Sum_probs=67.7

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++++|||.||+|||||+|+++.....   +++.|+.++.+...++.            +    -+..+....      .
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d------------~----rl~~L~~~~------~   59 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPD------------C----RLDELAEIV------K   59 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCc------------h----HHHHHHHhc------C
Confidence            368999999999999999999988754   88999999999884321            1    011111000      0


Q ss_pred             cccceeceeccccccceEEEEEeCCCchh-hhhhHHHHhhhhccccccceEEEEEECC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKSELQCLLTDESLASSIVFLVDTS  154 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~ii~v~d~~  154 (249)
                        ...       ......+.++|.+|.-. .++-...+-+|++.++.+|+++.|+|+.
T Consensus        60 --c~~-------k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          60 --CPP-------KIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             --CCC-------cEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence              000       01223567888887443 3333445677888888888888888875

>smart00053 DYNc Dynamin, GTPase

Probab=99.40  E-value=3.7e-11  Score=92.24  Aligned_cols=192  Identities=11%  Similarity=0.024  Sum_probs=90.5

Q ss_pred             hHHHHhhhcccccc--eecceEEEeccCCcchHHHHHHHhcCCCCC---CCCCCCcccceeeee--eeeceEEEEcCCCC
Q psy871            5 WDWFTGVLGYLGLW--TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ---PVPTLHPILGYLGLW--TKSGKLLFLGLDNA   77 (249)
Q Consensus         5 ~~~~~~~~~~~~~~--~~~~~i~vvG~~~~GKStll~~l~~~~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~g~~~~   77 (249)
                      .+.+-+...-+|..  -..+.++|+|++|+||||+++++++..+..   ...|..+..-.....  .....+.+.+....
T Consensus         8 ~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~   87 (240)
T smart00053        8 VNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFT   87 (240)
T ss_pred             HHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccC
Confidence            44444433355654  467799999999999999999999875321   111111111000000  01111212221112


Q ss_pred             chhHHHHHHhc--CCcccccCCcccceeceecccccc-ceEEEEEeCCCchhh------hhhHHHHhh-hhcccc-ccce
Q psy871           78 GKTTLLHMLKD--DRLAQPVPTLHPTRRVWKDYFPAV-DAIVFLVDTSDRERF------EESKSELQC-LLTDES-LASS  146 (249)
Q Consensus        78 Gkssl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~D~~g~~~~------~~~~~~~~~-~~~~~~-~~d~  146 (249)
                      ..+.+...+..  ......  +...........+... -..+.++|+||....      ......... ...+++ ..++
T Consensus        88 ~~~~v~~~i~~~~~~~~~~--~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~I  165 (240)
T smart00053       88 DFDEVRNEIEAETDRVTGT--NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECL  165 (240)
T ss_pred             CHHHHHHHHHHHHHHhcCC--CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCe
Confidence            22222222111  000000  1111111111111121 135889999997532      112222222 334555 4568


Q ss_pred             EEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhh
Q psy871          147 IVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL  204 (249)
Q Consensus       147 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  204 (249)
                      +++|+|+.....-.+.....+.+ .   ..+.|+++|+||+|..+..  .++.+.++.
T Consensus       166 IL~Vvda~~d~~~~d~l~ia~~l-d---~~~~rti~ViTK~D~~~~~--~~~~~~~~~  217 (240)
T smart00053      166 ILAVTPANVDLANSDALKLAKEV-D---PQGERTIGVITKLDLMDEG--TDARDILEN  217 (240)
T ss_pred             EEEEEECCCCCCchhHHHHHHHH-H---HcCCcEEEEEECCCCCCcc--HHHHHHHhC
Confidence            88899986633322222222222 2   2689999999999998642  225554443

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.40  E-value=7.2e-12  Score=101.54  Aligned_cols=178  Identities=17%  Similarity=0.161  Sum_probs=110.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCC--CCCCC--CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDR--LAQPV--PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~--~~~~~--~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      ++-++|+++-+...|||||+..|+...  +....  ....-+...++   ...                           
T Consensus         3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlE---kER---------------------------   52 (603)
T COG1217           3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLE---KER---------------------------   52 (603)
T ss_pred             cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchh---hhc---------------------------
Confidence            445799999999999999999998543  22100  00011111110   000                           


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                        |..-...  ...+...+..+.++|||||..|-.-.+      +.++-.|.+++++|+.+..-.+.-. .++..+.   
T Consensus        53 --GITILaK--nTav~~~~~~INIvDTPGHADFGGEVE------Rvl~MVDgvlLlVDA~EGpMPQTrF-VlkKAl~---  118 (603)
T COG1217          53 --GITILAK--NTAVNYNGTRINIVDTPGHADFGGEVE------RVLSMVDGVLLLVDASEGPMPQTRF-VLKKALA---  118 (603)
T ss_pred             --CcEEEec--cceeecCCeEEEEecCCCcCCccchhh------hhhhhcceEEEEEEcccCCCCchhh-hHHHHHH---
Confidence              1111111  112223456799999999999988777      7778899999999999854443322 3333333   


Q ss_pred             CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc----------chHHHHHHH
Q psy871          175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ----------GYGDGFRWL  244 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~----------gv~~l~~~l  244 (249)
                       .+.+.|+|+||+|...+...+-+.+.+..+... +      ......++|++-.||+.|.          ++..||+.+
T Consensus       119 -~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L-~------A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I  190 (603)
T COG1217         119 -LGLKPIVVINKIDRPDARPDEVVDEVFDLFVEL-G------ATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETI  190 (603)
T ss_pred             -cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHh-C------CChhhCCCcEEEeeccCceeccCccccccchhHHHHHH
Confidence             678889999999998865544444444433210 0      1122245899999999864          567788888


Q ss_pred             hhhc
Q psy871          245 ANYI  248 (249)
Q Consensus       245 ~~~i  248 (249)
                      .+++
T Consensus       191 ~~hv  194 (603)
T COG1217         191 LDHV  194 (603)
T ss_pred             HHhC
Confidence            7765

>KOG1490|consensus

Probab=99.37  E-value=2.1e-12  Score=105.47  Aligned_cols=163  Identities=17%  Similarity=0.142  Sum_probs=101.4

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      .....+.++|+|.||+|||||+|-++...+.   ++++|.....+-                                  
T Consensus       164 IDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH----------------------------------  209 (620)
T KOG1490|consen  164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH----------------------------------  209 (620)
T ss_pred             CCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh----------------------------------
Confidence            4466788999999999999999998765433   333333322222                                  


Q ss_pred             ccCCcccceeceeccccccceEEEEEeCCCchh--hhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhH--HHHHH
Q psy871           94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER--FEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESK--SELQC  168 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~--~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~--~~~~~  168 (249)
                                     +...-....+.||||.-.  .+. +.-.+.....-.+...+++|++|.+..+++.-..  ..++.
T Consensus       210 ---------------~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhs  274 (620)
T KOG1490|consen  210 ---------------LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHS  274 (620)
T ss_pred             ---------------hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHH
Confidence                           111223467889998321  111 1122222233346678899999999987764322  23334


Q ss_pred             HHhccCCCCCcEEEEEecCCCCCCCCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871          169 LLTDESLASCPVLILGNKIDKHGAASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL  244 (249)
Q Consensus       169 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  244 (249)
                      +  .+.+.+.|.|+|+||+|+......    +++.+.+...                ..++++++|..+.+|+.++....
T Consensus       275 I--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~----------------~~v~v~~tS~~~eegVm~Vrt~A  336 (620)
T KOG1490|consen  275 I--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD----------------GNVKVVQTSCVQEEGVMDVRTTA  336 (620)
T ss_pred             h--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc----------------cCceEEEecccchhceeeHHHHH
Confidence            3  444578999999999999763332    2333333322                23899999999999998876655


Q ss_pred             hh
Q psy871          245 AN  246 (249)
Q Consensus       245 ~~  246 (249)
                      ++
T Consensus       337 Ce  338 (620)
T KOG1490|consen  337 CE  338 (620)
T ss_pred             HH
Confidence            44

>cd01900 YchF YchF subfamily

Probab=99.36  E-value=8.1e-12  Score=97.72  Aligned_cols=99  Identities=20%  Similarity=0.202  Sum_probs=64.2

Q ss_pred             EEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           24 LLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      |+++|.||||||||+|+|++....   ++.+|+.+..+.+.++    +        .-...+. .+.         .+  
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~----d--------~r~~~l~-~~~---------~~--   56 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVP----D--------ERLDKLA-EIV---------KP--   56 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEec----c--------chhhhHH-HHh---------CC--
Confidence            589999999999999999998764   4667777777666321    0        0000010 000         00  


Q ss_pred             ceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECC
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTS  154 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~  154 (249)
                              .......+.++|+||...- .........++..++.+|++++|+|+.
T Consensus        57 --------~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          57 --------KKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             --------ceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence                    0112345889999996532 223345567888899999999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.36  E-value=7.8e-12  Score=95.35  Aligned_cols=169  Identities=15%  Similarity=0.138  Sum_probs=89.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      ||+++|+.+|||||+.+.+.....+.-...++++.                                             
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~---------------------------------------------   35 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTI---------------------------------------------   35 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG--------------------------------------------------
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcC---------------------------------------------
Confidence            79999999999999999997653321111111111                                             


Q ss_pred             eceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhh---HhhHHHHHHHHhccCCCCC
Q psy871          103 RVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF---EESKSELQCLLTDESLASC  178 (249)
Q Consensus       103 ~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~  178 (249)
                      ..-...+. .....+.+||.||+..+....- ....-...+.+.++|+|+|+.+.+-.   ..+...+..+.+  ..+++
T Consensus        36 ~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~-~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~--~sp~~  112 (232)
T PF04670_consen   36 DVEKSHVRFLSFLPLNIWDCPGQDDFMENYF-NSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQ--YSPNI  112 (232)
T ss_dssp             SEEEEEEECTTSCEEEEEEE-SSCSTTHTTH-TCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHH--HSTT-
T ss_pred             CceEEEEecCCCcEEEEEEcCCccccccccc-cccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHH--hCCCC
Confidence            11111111 2344799999999886654410 00111345789999999999954322   223333333322  23789


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhh-hcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      .+.+++.|+|+..+..+++..+... .+.....       ......+.++.+|... +.+-+.+..+.+.
T Consensus       113 ~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~-------~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~  174 (232)
T PF04670_consen  113 KVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE-------DLGIEDITFFLTSIWD-ESLYEAWSKIVQK  174 (232)
T ss_dssp             EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH-------HTT-TSEEEEEE-TTS-THHHHHHHHHHHT
T ss_pred             eEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh-------hccccceEEEeccCcC-cHHHHHHHHHHHH
Confidence            9999999999986433333222111 1110000       0111247889998887 5777777766654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=6.2e-12  Score=96.34  Aligned_cols=178  Identities=17%  Similarity=0.180  Sum_probs=108.3

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+++.+|+.+|+.+.|||||.-+++..-....                  ......++..           +..++ -..
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~------------------~~~~~~y~~i-----------d~aPe-Ek~   58 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKG------------------GAEAKAYDQI-----------DNAPE-EKA   58 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhc------------------cccccchhhh-----------ccCch-Hhh
Confidence            46788999999999999999999975221100                  0000000000           00000 002


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                      .+.+.+..+..|+..+..+-.+|+||+..|-.+.-      ......|..|+|+.+++..-.+..+..+.     ....+
T Consensus        59 rGITIntahveyet~~rhyahVDcPGHaDYvKNMI------tgAaqmDgAILVVsA~dGpmPqTrEHiLl-----arqvG  127 (394)
T COG0050          59 RGITINTAHVEYETANRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVAATDGPMPQTREHILL-----ARQVG  127 (394)
T ss_pred             cCceeccceeEEecCCceEEeccCCChHHHHHHHh------hhHHhcCccEEEEEcCCCCCCcchhhhhh-----hhhcC
Confidence            22334444556677788899999999988866555      66678999999999998543333221111     11256


Q ss_pred             Cc-EEEEEecCCCCCCCC-----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc-cc-------hHHHHHH
Q psy871          178 CP-VLILGNKIDKHGAAS-----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR-QG-------YGDGFRW  243 (249)
Q Consensus       178 ~p-~ivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g-~g-------v~~l~~~  243 (249)
                      .| +++++||+|++++..     ..++++++....            +.....|++.-||+.. +|       +.+|++.
T Consensus       128 vp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~------------f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~a  195 (394)
T COG0050         128 VPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG------------FPGDDTPIIRGSALKALEGDAKWEAKIEELMDA  195 (394)
T ss_pred             CcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC------------CCCCCcceeechhhhhhcCCcchHHHHHHHHHH
Confidence            65 678899999998422     234556666555            5556789999998753 32       3556665


Q ss_pred             Hhhhc
Q psy871          244 LANYI  248 (249)
Q Consensus       244 l~~~i  248 (249)
                      +.++|
T Consensus       196 vd~yi  200 (394)
T COG0050         196 VDSYI  200 (394)
T ss_pred             HHhcC
Confidence            55544

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.35  E-value=4.8e-12  Score=91.74  Aligned_cols=80  Identities=14%  Similarity=0.167  Sum_probs=57.1

Q ss_pred             ccc-eEEEEEECCChhhhHhhHHHHHHHHh-ccCCCCCcEEEEEecCCCCCCC--CHHHHHHHhhhcccccCcccCCCCC
Q psy871          143 LAS-SIVFLVDTSDRERFEESKSELQCLLT-DESLASCPVLILGNKIDKHGAA--SEEEIRQYFGLYGLTTGKVATPRSE  218 (249)
Q Consensus       143 ~~d-~ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                      ..+ .-++|+|++..+..-.         + .+.... .-++|+||.|+....  +.+...+..+..+            
T Consensus       116 L~d~~~v~VidvteGe~~P~---------K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~n------------  173 (202)
T COG0378         116 LGDHLRVVVIDVTEGEDIPR---------KGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVN------------  173 (202)
T ss_pred             hhhceEEEEEECCCCCCCcc---------cCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhC------------
Confidence            344 7799999988532110         0 111122 568999999998743  3466777677665            


Q ss_pred             CCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          219 MSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       219 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                         +..+++++|+++|+|++++++|+...
T Consensus       174 ---p~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         174 ---PEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             ---CCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence               56899999999999999999999765

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.33  E-value=1.9e-11  Score=108.67  Aligned_cols=71  Identities=14%  Similarity=0.166  Sum_probs=50.2

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      +..+..+.++||||+..|.....      ..+..+|++++|+|+.+....+.. ..+.... .   .++|+++++||+|.
T Consensus        82 ~~~~~~i~liDTPG~~~f~~~~~------~al~~aD~~llVvda~~g~~~~t~-~~~~~~~-~---~~~p~ivviNKiD~  150 (720)
T TIGR00490        82 EGNEYLINLIDTPGHVDFGGDVT------RAMRAVDGAIVVVCAVEGVMPQTE-TVLRQAL-K---ENVKPVLFINKVDR  150 (720)
T ss_pred             cCCceEEEEEeCCCccccHHHHH------HHHHhcCEEEEEEecCCCCCccHH-HHHHHHH-H---cCCCEEEEEEChhc
Confidence            44567899999999988765444      667889999999999874322221 1222222 2   56888999999998


Q ss_pred             CC
Q psy871          190 HG  191 (249)
Q Consensus       190 ~~  191 (249)
                      ..
T Consensus       151 ~~  152 (720)
T TIGR00490       151 LI  152 (720)
T ss_pred             cc
Confidence            64

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.32  E-value=4.5e-11  Score=106.56  Aligned_cols=69  Identities=16%  Similarity=0.207  Sum_probs=48.9

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+..+.++||||+..|.....      ..+..+|++++|+|+...-..+. ...+.....    .+.|.++++||+|+..
T Consensus        85 ~~~~i~liDtPG~~df~~~~~------~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~----~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         85 KEYLINLIDTPGHVDFGGDVT------RAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR----ERVKPVLFINKVDRLI  153 (731)
T ss_pred             CcEEEEEEcCCCccChHHHHH------HHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH----cCCCeEEEEECchhhc
Confidence            466789999999988765444      66788999999999987533222 223333222    4578899999999863

>KOG0461|consensus

Probab=99.31  E-value=4.6e-11  Score=93.60  Aligned_cols=118  Identities=12%  Similarity=0.060  Sum_probs=72.8

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH-HHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS-ELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      ...+.++|+||+...-...      +......|..++|+|+.....-+..+- .+-++      .....++|+||+|...
T Consensus        69 ~lq~tlvDCPGHasLIRti------iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lp  136 (522)
T KOG0461|consen   69 QLQFTLVDCPGHASLIRTI------IGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLP  136 (522)
T ss_pred             cceeEEEeCCCcHHHHHHH------HhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEecccccc
Confidence            3568899999987543322      245566789999999987544443321 12222      3456788888888765


Q ss_pred             CCC-HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc----cchHHHHHHHhhhc
Q psy871          192 AAS-EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR----QGYGDGFRWLANYI  248 (249)
Q Consensus       192 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----~gv~~l~~~l~~~i  248 (249)
                      +.. ...++...+......+.-      -...+.|++++||+.|    +++.++.+.|.+++
T Consensus       137 E~qr~ski~k~~kk~~KtLe~t------~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  137 ENQRASKIEKSAKKVRKTLEST------GFDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             chhhhhHHHHHHHHHHHHHHhc------CcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence            322 333444444433221111      1113489999999999    88888888887654

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.29  E-value=3.5e-11  Score=95.45  Aligned_cols=209  Identities=19%  Similarity=0.133  Sum_probs=116.1

Q ss_pred             ccccceecceEEEeccCCcchHHHHHHHhcCCCCCC--CCC--CCcccceeeee-eeeceEEEEcCCCCchhHHHHHHhc
Q psy871           14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP--VPT--LHPILGYLGLW-TKSGKLLFLGLDNAGKTTLLHMLKD   88 (249)
Q Consensus        14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~--~~t--~~~~~~~~~~~-~~~~~~~~~g~~~~Gkssl~~~l~~   88 (249)
                      +..-+..+..+++.|+.++|||||+..|+.+.....  .+.  +......+..- +.+-...+.|.+..+.-.+.+-+. 
T Consensus       110 ~~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld-  188 (527)
T COG5258         110 KTEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLD-  188 (527)
T ss_pred             cccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCccc-
Confidence            344567788999999999999999999987654410  000  11111111000 012233344444421111100000 


Q ss_pred             CCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHH
Q psy871           89 DRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC  168 (249)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~  168 (249)
                              .     .-....+...|..+.++|+.|++.|-...-  ..++.  ...|..++++.+++..+.-. ++.+--
T Consensus       189 --------~-----aE~~~vv~~aDklVsfVDtvGHEpwLrTti--rGL~g--qk~dYglLvVaAddG~~~~t-kEHLgi  250 (527)
T COG5258         189 --------E-----AEKAAVVKRADKLVSFVDTVGHEPWLRTTI--RGLLG--QKVDYGLLVVAADDGVTKMT-KEHLGI  250 (527)
T ss_pred             --------H-----HHHhHhhhhcccEEEEEecCCccHHHHHHH--HHHhc--cccceEEEEEEccCCcchhh-hHhhhh
Confidence                    0     000112356678899999999998754332  22222  46899999999988533221 112222


Q ss_pred             HHhccCCCCCcEEEEEecCCCCCCCC----HHHHHHHhhhcccccCccc------CC--CCCCCCCceeEEEeeeccccc
Q psy871          169 LLTDESLASCPVLILGNKIDKHGAAS----EEEIRQYFGLYGLTTGKVA------TP--RSEMSGRPIELFMCSVLMRQG  236 (249)
Q Consensus       169 ~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~Sa~~g~g  236 (249)
                      .+    ....|++++++|+|+..+..    .+++...++..+...-...      ..  +-+.+..-+|+|.+|+.+|+|
T Consensus       251 ~~----a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~G  326 (527)
T COG5258         251 AL----AMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEG  326 (527)
T ss_pred             hh----hhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCcc
Confidence            22    26899999999999987433    3455555655432211000      01  111222358999999999999


Q ss_pred             hHHHHHHHh
Q psy871          237 YGDGFRWLA  245 (249)
Q Consensus       237 v~~l~~~l~  245 (249)
                      ++-|.+.+.
T Consensus       327 ldlL~e~f~  335 (527)
T COG5258         327 LDLLDEFFL  335 (527)
T ss_pred             HHHHHHHHH
Confidence            987766554

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.29  E-value=7.1e-12  Score=92.09  Aligned_cols=68  Identities=18%  Similarity=0.172  Sum_probs=43.4

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI  187 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  187 (249)
                      ..+.++||||.........  .....+++.+|++++|.++++..+-.... .+.+....   ....+++|.||+
T Consensus       101 ~~~~lvDtPG~~~~~~~~~--~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHT--EITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDP---DKSRTIFVLNKA  168 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTS--HHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTT---TCSSEEEEEE-G
T ss_pred             cceEEEeCCccccchhhhH--HHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcC---CCCeEEEEEcCC
Confidence            3589999999765333322  12225558899999999999965555443 33333332   445599999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.28  E-value=2e-11  Score=110.04  Aligned_cols=68  Identities=15%  Similarity=0.230  Sum_probs=51.3

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      .+..+.++||||+..|.....      ..+..+|+.++|+|+...-..+.. ..+.....    .++|+++++||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~------~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVT------AALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHH------HHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH----CCCCEEEEEECCccc
Confidence            356788999999998876665      667889999999999875433322 23333322    689999999999987

>PTZ00416 elongation factor 2; Provisional

Probab=99.26  E-value=3.7e-11  Score=108.22  Aligned_cols=67  Identities=15%  Similarity=0.247  Sum_probs=49.8

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      +..+.++||||+..|.....      ..+..+|++++|+|+.+.-..+.. ..+.....    .++|+++++||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~------~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVT------AALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHH------HHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH----cCCCEEEEEEChhhh
Confidence            45689999999988765544      667889999999999885433322 23333322    578999999999997

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.25  E-value=1.4e-10  Score=89.96  Aligned_cols=28  Identities=25%  Similarity=0.353  Sum_probs=24.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      ..+.+|+|+|.+|||||||+|+|++...
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~   56 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERK   56 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence            5568999999999999999999988654

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=1e-10  Score=94.63  Aligned_cols=159  Identities=16%  Similarity=0.058  Sum_probs=102.8

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      -|+..|+...|||||+.++++.......     ...                                      ..+.+.
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~-----Eek--------------------------------------KRG~Ti   38 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLP-----EEK--------------------------------------KRGITI   38 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccch-----hhh--------------------------------------hcCceE
Confidence            4788899999999999999765432100     000                                      111222


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VL  181 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i  181 (249)
                      +..-.+.+..+..+.++|.||++++-+..-      ..+...|..++|+|+++.-..+..+  ...++..   .+++ .+
T Consensus        39 Dlg~~y~~~~d~~~~fIDvpgh~~~i~~mi------ag~~~~d~alLvV~~deGl~~qtgE--hL~iLdl---lgi~~gi  107 (447)
T COG3276          39 DLGFYYRKLEDGVMGFIDVPGHPDFISNLL------AGLGGIDYALLVVAADEGLMAQTGE--HLLILDL---LGIKNGI  107 (447)
T ss_pred             eeeeEeccCCCCceEEeeCCCcHHHHHHHH------hhhcCCceEEEEEeCccCcchhhHH--HHHHHHh---cCCCceE
Confidence            222233445566899999999998766555      6678899999999997644333321  1122222   4444 59


Q ss_pred             EEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       182 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+||+|..+..   ++.+..+.+...          ......++|.+|+++|+|+++|.+.|.+..
T Consensus       108 ivltk~D~~d~~---r~e~~i~~Il~~----------l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         108 IVLTKADRVDEA---RIEQKIKQILAD----------LSLANAKIFKTSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             EEEeccccccHH---HHHHHHHHHHhh----------cccccccccccccccCCCHHHHHHHHHHhh
Confidence            999999998743   333333332211          112347889999999999999999998764

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.25  E-value=3.3e-11  Score=93.59  Aligned_cols=96  Identities=21%  Similarity=0.147  Sum_probs=69.5

Q ss_pred             hhhhhhHHHHhhhhccccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHH-HHHHHh
Q psy871          125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEE-EIRQYF  202 (249)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~  202 (249)
                      +++..+.+      .+++.+|.+++|+|++++. ++..+..|+.... .   .++|+++|+||+||.++.... +..+.+
T Consensus        24 eR~~~L~r------~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~-~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~   93 (245)
T TIGR00157        24 ERKNELTR------PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAE-A---QNIEPIIVLNKIDLLDDEDMEKEQLDIY   93 (245)
T ss_pred             cccceEEC------cccccCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEECcccCCCHHHHHHHHHHH
Confidence            34455555      4678899999999999877 7887877776442 2   679999999999997532211 222222


Q ss_pred             hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          203 GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +..+                 .+++++||++|.|++++++.+.+.
T Consensus        94 ~~~g-----------------~~v~~~SAktg~gi~eLf~~l~~~  121 (245)
T TIGR00157        94 RNIG-----------------YQVLMTSSKNQDGLKELIEALQNR  121 (245)
T ss_pred             HHCC-----------------CeEEEEecCCchhHHHHHhhhcCC
Confidence            2222                 689999999999999999988653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.23  E-value=5e-10  Score=90.71  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=22.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...|+|+|+.++|||||+|++++.
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q   40 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMEL   40 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhh
Confidence            458999999999999999999986

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG1143|consensus

Probab=99.22  E-value=5.5e-11  Score=94.10  Aligned_cols=195  Identities=18%  Similarity=0.238  Sum_probs=111.3

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCCCC----CCCCcccceeeeeeeeceEE-----EEcCCCCchhHHHHHHhcCCc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPV----PTLHPILGYLGLWTKSGKLL-----FLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~-----~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      +.+++++|-..+|||||+.-|+.++.....    -.+......+    .+++..     +.|.++.|+--.         
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEi----qsGrTSsis~evlGFd~~g~vVN---------  233 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEI----QSGRTSSISNEVLGFDNRGKVVN---------  233 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhh----ccCcccccchhcccccccccccc---------
Confidence            679999999999999999999987655211    1111111112    111111     112222222110         


Q ss_pred             ccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           92 AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                         +    ..........+.....+.++|.+|+.+|....-   +-+. -...|+.++|+.+.....+..- +.+--+..
T Consensus       234 ---Y----~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi---~gLt-gY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~A  301 (591)
T KOG1143|consen  234 ---Y----AQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTI---HGLT-GYTPHFACLVVSADRGITWTTR-EHLGLIAA  301 (591)
T ss_pred             ---h----hhcccHHHHHhhhcceEEEeecccchhhheeee---eecc-cCCCceEEEEEEcCCCCccccH-HHHHHHHH
Confidence               0    000011223445566799999999988765543   1111 1347899999999886554322 23333322


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCH----HHHHHHhhhcccccC-c-------ccCCCC-CCCCCceeEEEeeeccccchH
Q psy871          172 DESLASCPVLILGNKIDKHGAASE----EEIRQYFGLYGLTTG-K-------VATPRS-EMSGRPIELFMCSVLMRQGYG  238 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~-~-------~~~~~~-~~~~~~~~~~~~Sa~~g~gv~  238 (249)
                          .++|++++++|+|+++....    +++.+.+...+...- +       +..... ....+-.|+|.+|+.+|+|++
T Consensus       302 ----L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~  377 (591)
T KOG1143|consen  302 ----LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR  377 (591)
T ss_pred             ----hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh
Confidence                68999999999999885333    445555544432211 0       001111 122345799999999999998


Q ss_pred             HHHHHH
Q psy871          239 DGFRWL  244 (249)
Q Consensus       239 ~l~~~l  244 (249)
                      -+...|
T Consensus       378 ll~~fL  383 (591)
T KOG1143|consen  378 LLRTFL  383 (591)
T ss_pred             HHHHHH
Confidence            776554

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=6.4e-11  Score=103.34  Aligned_cols=140  Identities=18%  Similarity=0.159  Sum_probs=86.3

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ..+-++|+|+||.++|||||..+|+...-.                     +.-.|..-.|.+.+-..-....+     |
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~---------------------i~k~G~v~~g~~~~D~~e~EqeR-----G   60 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGI---------------------ISKIGEVHDGAATMDWMEQEQER-----G   60 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCC---------------------cCCCccccCCCccCCCcHHHHhc-----C
Confidence            567789999999999999999999742211                     11122222222211111111111     1


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                      ..-.......+..+ +..+.++|||||-.|..-.+      +.+..+|+.+.|+|+...-..+.-. .|++.    ...+
T Consensus        61 ITI~saa~s~~~~~-~~~iNlIDTPGHVDFt~EV~------rslrvlDgavvVvdaveGV~~QTEt-v~rqa----~~~~  128 (697)
T COG0480          61 ITITSAATTLFWKG-DYRINLIDTPGHVDFTIEVE------RSLRVLDGAVVVVDAVEGVEPQTET-VWRQA----DKYG  128 (697)
T ss_pred             CEEeeeeeEEEEcC-ceEEEEeCCCCccccHHHHH------HHHHhhcceEEEEECCCCeeecHHH-HHHHH----hhcC
Confidence            11111111111121 57899999999999988777      7788999999999998853333221 23333    2378


Q ss_pred             CcEEEEEecCCCCCCCCH
Q psy871          178 CPVLILGNKIDKHGAASE  195 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~  195 (249)
                      .|.++++||+|.......
T Consensus       129 vp~i~fiNKmDR~~a~~~  146 (697)
T COG0480         129 VPRILFVNKMDRLGADFY  146 (697)
T ss_pred             CCeEEEEECccccccChh
Confidence            999999999999774333

>KOG0410|consensus

Probab=99.21  E-value=5.2e-11  Score=92.54  Aligned_cols=155  Identities=25%  Similarity=0.251  Sum_probs=95.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      .+.+.|+|||..|+|||||+++|++....   .-+.|.+++....                                   
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a-----------------------------------  220 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSA-----------------------------------  220 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhc-----------------------------------
Confidence            34569999999999999999999854433   1112222221111                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhh--hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                                  .++ ....+.+.||-|+.+-  ..+...+..++.....+|.++.|.|+++|.--..... ....++..
T Consensus       221 ------------~Lp-sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~i  286 (410)
T KOG0410|consen  221 ------------HLP-SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRET-VLHVLNQI  286 (410)
T ss_pred             ------------cCC-CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHH-HHHHHHhc
Confidence                        112 1235677888885432  3344556777888899999999999999865544332 22333333


Q ss_pred             CCCCCc----EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          174 SLASCP----VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       174 ~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      .....|    ++=|-||+|........                      ..   --.+.+||++|.|++++.+.+...
T Consensus       287 gv~~~pkl~~mieVdnkiD~e~~~~e~----------------------E~---n~~v~isaltgdgl~el~~a~~~k  339 (410)
T KOG0410|consen  287 GVPSEPKLQNMIEVDNKIDYEEDEVEE----------------------EK---NLDVGISALTGDGLEELLKAEETK  339 (410)
T ss_pred             CCCcHHHHhHHHhhccccccccccCcc----------------------cc---CCccccccccCccHHHHHHHHHHH
Confidence            323333    34456677765431111                      00   126789999999999999887654

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.20  E-value=5.5e-10  Score=88.11  Aligned_cols=124  Identities=10%  Similarity=0.088  Sum_probs=69.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+..+|+++|.+|+||||++|+|++.+...............                                      
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~--------------------------------------   77 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPM--------------------------------------   77 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEE--------------------------------------
Confidence            467899999999999999999999876542111111000000                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHH----HhhhhccccccceEEEEEECCC--hhhh-HhhHHHHHHHHh
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE----LQCLLTDESLASSIVFLVDTSD--RERF-EESKSELQCLLT  171 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~----~~~~~~~~~~~d~ii~v~d~~~--~~~~-~~~~~~~~~~~~  171 (249)
                           .....  .....+.++||||........+.    .++++.. ...|++++|...+.  .... ..+.+.+.....
T Consensus        78 -----~~~~~--~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG  149 (313)
T TIGR00991        78 -----MVSRT--RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFG  149 (313)
T ss_pred             -----EEEEE--ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhh
Confidence                 00000  12346899999997754332221    2222221 36899999965443  2212 222223333322


Q ss_pred             ccCCCCCcEEEEEecCCCC
Q psy871          172 DESLASCPVLILGNKIDKH  190 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ..  --.+.++++|++|..
T Consensus       150 ~~--iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       150 KD--IWRKSLVVLTHAQFS  166 (313)
T ss_pred             hh--hhccEEEEEECCccC
Confidence            11  236799999999976

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.17  E-value=1e-09  Score=83.67  Aligned_cols=127  Identities=16%  Similarity=0.120  Sum_probs=68.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      .+|+|+|..||||||+.|.+++.............                                            +
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~--------------------------------------------t   36 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSV--------------------------------------------T   36 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS----------------------------------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCc--------------------------------------------c
Confidence            37999999999999999999886643211100000                                            0


Q ss_pred             eeceeccccccceEEEEEeCCCchhhh----hhHH-HHhhhhccccccceEEEEEECCChhh-hHhhHHHHHHHHhccCC
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFE----ESKS-ELQCLLTDESLASSIVFLVDTSDRER-FEESKSELQCLLTDESL  175 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~----~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~  175 (249)
                      ...........+..+.++||||.....    .... ...++.......|++++|+...+... -....+.+..+....  
T Consensus        37 ~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--  114 (212)
T PF04548_consen   37 QECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--  114 (212)
T ss_dssp             SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--
T ss_pred             cccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--
Confidence            000001112234678999999954321    1122 22223334577999999999984321 122223444443321  


Q ss_pred             CCCcEEEEEecCCCCCCCC
Q psy871          176 ASCPVLILGNKIDKHGAAS  194 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~  194 (249)
                      .-..++||.|.+|...+..
T Consensus       115 ~~k~~ivvfT~~d~~~~~~  133 (212)
T PF04548_consen  115 IWKHTIVVFTHADELEDDS  133 (212)
T ss_dssp             GGGGEEEEEEEGGGGTTTT
T ss_pred             HHhHhhHHhhhcccccccc
Confidence            1256899999999877544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=5e-10  Score=90.44  Aligned_cols=141  Identities=22%  Similarity=0.262  Sum_probs=88.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc--CCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD--DRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .+.+..+|+-+|.+|||||...|+-  +-+.......+.                 +....-+|.-+..-.       ..
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~r-----------------k~~~~a~SDWM~iEk-------qR   65 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGR-----------------KSGKHAKSDWMEIEK-------QR   65 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeec-----------------cCCcccccHHHHHHH-------hc
Confidence            3567899999999999999999863  222221111111                 111111222222111       11


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      |+..+...  ..++..++.+.+.|||||+.|.+-.-      +.+..+|+.+.|+|+...--.+..  .+.+..   ...
T Consensus        66 GISVtsSV--MqF~Y~~~~iNLLDTPGHeDFSEDTY------RtLtAvDsAvMVIDaAKGiE~qT~--KLfeVc---rlR  132 (528)
T COG4108          66 GISVTSSV--MQFDYADCLVNLLDTPGHEDFSEDTY------RTLTAVDSAVMVIDAAKGIEPQTL--KLFEVC---RLR  132 (528)
T ss_pred             CceEEeeE--EEeccCCeEEeccCCCCccccchhHH------HHHHhhheeeEEEecccCccHHHH--HHHHHH---hhc
Confidence            44444444  33455688899999999999987766      667789999999999874333332  233333   338


Q ss_pred             CCcEEEEEecCCCCCCCCHH
Q psy871          177 SCPVLILGNKIDKHGAASEE  196 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~  196 (249)
                      ++|++-.+||.|.....+.+
T Consensus       133 ~iPI~TFiNKlDR~~rdP~E  152 (528)
T COG4108         133 DIPIFTFINKLDREGRDPLE  152 (528)
T ss_pred             CCceEEEeeccccccCChHH
Confidence            99999999999987654443

>KOG1486|consensus

Probab=99.16  E-value=1.5e-09  Score=81.64  Aligned_cols=183  Identities=19%  Similarity=0.229  Sum_probs=112.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC---CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR---LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      -..+|+++|.|.+|||||+..++...   ..+.++|....++.+.+  ...++++...|+.  -.-           ...
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y--~ga~IQllDLPGI--ieG-----------Asq  125 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHY--NGANIQLLDLPGI--IEG-----------ASQ  125 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEe--cCceEEEecCccc--ccc-----------ccc
Confidence            35699999999999999999999643   44778899999998854  3445555544432  211           111


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHH-HH----------------------------------------h
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS-EL----------------------------------------Q  135 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~~----------------------------------------~  135 (249)
                      +.++.+... ..-+..|..+.+.|..-.+.-.+..+ .+                                        .
T Consensus       126 gkGRGRQvi-avArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~  204 (364)
T KOG1486|consen  126 GKGRGRQVI-AVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIY  204 (364)
T ss_pred             CCCCCceEE-EEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHH
Confidence            333333332 22345566777777765443332222 11                                        2


Q ss_pred             hhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCC
Q psy871          136 CLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATP  215 (249)
Q Consensus       136 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (249)
                      ..+..|+.-++-+++-+....+.|-+.       . ..+...++++.|.||+|.+   +.+++.+..+..+         
T Consensus       205 ~ILheykI~Naevl~ReD~t~DdfIDv-------i-~gnr~Y~~ClYvYnKID~v---s~eevdrlAr~Pn---------  264 (364)
T KOG1486|consen  205 TILHEYKIHNAEVLFREDCTVDDFIDV-------I-EGNRVYIKCLYVYNKIDQV---SIEEVDRLARQPN---------  264 (364)
T ss_pred             HHHHHHeeccceEEEecCCChHHHHHH-------H-hccceEEEEEEEeecccee---cHHHHHHHhcCCC---------
Confidence            223334445555555544444434332       1 1122468999999999976   5678887777654         


Q ss_pred             CCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          216 RSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       216 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                                -+-+|.....|++.+++.+.+.+
T Consensus       265 ----------svViSC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  265 ----------SVVISCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             ----------cEEEEeccccCHHHHHHHHHHHh
Confidence                      34466677789999999988765

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.14  E-value=4.6e-10  Score=90.85  Aligned_cols=171  Identities=13%  Similarity=0.046  Sum_probs=75.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+.+|+|+|.+|+|||||+|+|.+-...  ...+|-.     .                                    
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-----~------------------------------------   71 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-----V------------------------------------   71 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-----H------------------------------------
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-----C------------------------------------
Confidence            45779999999999999999999763221  1111110     0                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                        +.+........+.. -.+.+||.||.....-....+..- ......|.++++.+-.-..  .++  ++..-+..   .
T Consensus        72 --etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~-~~~~~yD~fiii~s~rf~~--ndv--~La~~i~~---~  140 (376)
T PF05049_consen   72 --ETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKE-VKFYRYDFFIIISSERFTE--NDV--QLAKEIQR---M  140 (376)
T ss_dssp             --SCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHH-TTGGG-SEEEEEESSS--H--HHH--HHHHHHHH---T
T ss_pred             --cCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHH-ccccccCEEEEEeCCCCch--hhH--HHHHHHHH---c
Confidence              00000000001111 138899999975432222211111 1356678777765432221  111  33332233   6


Q ss_pred             CCcEEEEEecCCC---------CCCCCHHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEeeecc--ccchHHHHHHH
Q psy871          177 SCPVLILGNKIDK---------HGAASEEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMCSVLM--RQGYGDGFRWL  244 (249)
Q Consensus       177 ~~p~ivv~nK~Dl---------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--g~gv~~l~~~l  244 (249)
                      ++|+.+|-||+|.         .....++++.+.++. +...       .........++|-+|+..  .+.+..|.+.|
T Consensus       141 gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~-------L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL  213 (376)
T PF05049_consen  141 GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLEN-------LQKAGVSEPQVFLVSSFDLSKYDFPKLEETL  213 (376)
T ss_dssp             T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHH-------HHCTT-SS--EEEB-TTTTTSTTHHHHHHHH
T ss_pred             CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHH-------HHHcCCCcCceEEEeCCCcccCChHHHHHHH
Confidence            8999999999995         112222222222111 1100       001223446799999975  45677777777


Q ss_pred             hhhc
Q psy871          245 ANYI  248 (249)
Q Consensus       245 ~~~i  248 (249)
                      .+.|
T Consensus       214 ~~dL  217 (376)
T PF05049_consen  214 EKDL  217 (376)
T ss_dssp             HHHS
T ss_pred             HHHh
Confidence            6543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd00066 G-alpha G protein alpha subunit

Probab=99.13  E-value=2.4e-10  Score=92.15  Aligned_cols=125  Identities=14%  Similarity=0.117  Sum_probs=86.4

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh----------hhhHhhHHHHHHHHhccCCCCCcE
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR----------ERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                      ..+..+.+||++|+......+.      .++..++++++|+|.++.          ..+.+....+..++......++|+
T Consensus       158 ~~~~~~~~~DvgGq~~~R~kW~------~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pi  231 (317)
T cd00066         158 IKNLKFRMFDVGGQRSERKKWI------HCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSI  231 (317)
T ss_pred             ecceEEEEECCCCCcccchhHH------HHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCE
Confidence            3455688999999877666665      667789999999999874          456666667778877766778999


Q ss_pred             EEEEecCCCCC------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871          181 LILGNKIDKHG------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR  242 (249)
Q Consensus       181 ivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  242 (249)
                      ++++||.|+..                  ....+++..++.......       .....+.+.++.++|..-.++..+|+
T Consensus       232 ll~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~-------~~~~~~~~~~~~t~a~Dt~~i~~vf~  304 (317)
T cd00066         232 ILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDL-------NRNPNKEIYPHFTCATDTENIRFVFD  304 (317)
T ss_pred             EEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHh-------hcCCCCeEEEEeccccchHHHHHHHH
Confidence            99999999643                  112233333332211000       00123557788899999999999998


Q ss_pred             HHhhhc
Q psy871          243 WLANYI  248 (249)
Q Consensus       243 ~l~~~i  248 (249)
                      .+.+.|
T Consensus       305 ~v~~~i  310 (317)
T cd00066         305 AVKDII  310 (317)
T ss_pred             HHHHHH
Confidence            877643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>smart00275 G_alpha G protein alpha subunit

Probab=99.12  E-value=3.1e-10  Score=92.27  Aligned_cols=126  Identities=16%  Similarity=0.148  Sum_probs=86.2

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh----------hhhHhhHHHHHHHHhccCCCCCcE
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR----------ERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                      ..+..+.+||.+|+......+.      .++..++++++|+|.++.          ..+.+....+..++......++|+
T Consensus       181 ~~~~~~~~~DvgGqr~~R~kW~------~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pi  254 (342)
T smart00275      181 VKKLFFRMFDVGGQRSERKKWI------HCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSI  254 (342)
T ss_pred             ECCeEEEEEecCCchhhhhhHH------HHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcE
Confidence            3445578999999876666665      567889999999999973          356666667788887777788999


Q ss_pred             EEEEecCCCCCC-----------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871          181 LILGNKIDKHGA-----------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW  243 (249)
Q Consensus       181 ivv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  243 (249)
                      ++++||.|+..+                 ...+++..++........     . ....+.+..+.++|..-.++..+++.
T Consensus       255 il~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~-----~-~~~~r~~y~h~t~a~Dt~~~~~v~~~  328 (342)
T smart00275      255 ILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLN-----R-NSSRKSIYHHFTCATDTRNIRVVFDA  328 (342)
T ss_pred             EEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhc-----c-CCCCceEEEEEeeecccHHHHHHHHH
Confidence            999999997531                 122333333332211000     0 00224577889999999999999887


Q ss_pred             Hhhhc
Q psy871          244 LANYI  248 (249)
Q Consensus       244 l~~~i  248 (249)
                      +.+.|
T Consensus       329 v~~~I  333 (342)
T smart00275      329 VKDII  333 (342)
T ss_pred             HHHHH
Confidence            76543

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01859 MJ1464 MJ1464

Probab=99.09  E-value=3.5e-10  Score=82.08  Aligned_cols=85  Identities=18%  Similarity=0.093  Sum_probs=56.4

Q ss_pred             cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871          142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG  221 (249)
Q Consensus       142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (249)
                      +.+|++++|+|++++......  .+..++..   .++|+++|+||+|+.+....+++....+.                 
T Consensus        11 ~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~-----------------   68 (156)
T cd01859          11 KESDVVLEVLDARDPELTRSR--KLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKES-----------------   68 (156)
T ss_pred             hhCCEEEEEeeCCCCcccCCH--HHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHHh-----------------
Confidence            459999999999876443321  23333222   46899999999999643111111111111                 


Q ss_pred             CceeEEEeeeccccchHHHHHHHhhhc
Q psy871          222 RPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       222 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...+++++||+++.|++++++.+.+.+
T Consensus        69 ~~~~~~~iSa~~~~gi~~L~~~l~~~~   95 (156)
T cd01859          69 EGIPVVYVSAKERLGTKILRRTIKELA   95 (156)
T ss_pred             CCCcEEEEEccccccHHHHHHHHHHHH
Confidence            125789999999999999999998653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.01  E-value=2.2e-09  Score=84.78  Aligned_cols=27  Identities=22%  Similarity=0.406  Sum_probs=22.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA   47 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~   47 (249)
                      .++|+|+|.+|+|||||+|.|.+....
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~   30 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDII   30 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS--
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccc
Confidence            568999999999999999999886544

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG2486|consensus

Probab=99.00  E-value=4.4e-10  Score=85.70  Aligned_cols=167  Identities=21%  Similarity=0.187  Sum_probs=90.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+.+.++++|.+|+|||+|+|.++.....                      ...+.+..|++                  
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~----------------------~~t~k~K~g~T------------------  173 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNI----------------------ADTSKSKNGKT------------------  173 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhh----------------------hhhcCCCCccc------------------
Confidence            55689999999999999999998542211                      11111122222                  


Q ss_pred             ccceeceeccccccceEEEEEeCCCchh----hhhhHHH---HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRER----FEESKSE---LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~----~~~~~~~---~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                         +.+  .++ .......++|.||..+    ++.-.++   -..++...+.--.+.+++|++-+.  +..+....+++.
T Consensus       174 ---q~i--n~f-~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~g  245 (320)
T KOG2486|consen  174 ---QAI--NHF-HVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLG  245 (320)
T ss_pred             ---eee--eee-eccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHh
Confidence               111  111 2344688899999221    1111111   122333333444556677776642  222224444544


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCC------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871          172 DESLASCPVLILGNKIDKHGAAS------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA  245 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  245 (249)
                      +   .+.|+.+|+||||......      ...+...++.+.          .+......|++.+|+.++.|.++++-.+.
T Consensus       246 e---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~----------~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~  312 (320)
T KOG2486|consen  246 E---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI----------RGVFLVDLPWIYVSSVTSLGRDLLLLHIA  312 (320)
T ss_pred             h---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc----------ccceeccCCceeeecccccCceeeeeehh
Confidence            4   7899999999999865321      011111111110          11222346788899999999999876655


Q ss_pred             h
Q psy871          246 N  246 (249)
Q Consensus       246 ~  246 (249)
                      +
T Consensus       313 q  313 (320)
T KOG2486|consen  313 Q  313 (320)
T ss_pred             h
Confidence            4

>PRK12289 GTPase RsgA; Reviewed

Probab=98.99  E-value=2.2e-09  Score=87.29  Aligned_cols=87  Identities=14%  Similarity=0.087  Sum_probs=61.1

Q ss_pred             cccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCC
Q psy871          140 DESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSE  218 (249)
Q Consensus       140 ~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                      .+..+|.+++|+|+.++. ....+..++... .   ..++|+++|+||+||......+.+...+..++            
T Consensus        86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g------------  149 (352)
T PRK12289         86 PVANADQILLVFALAEPPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVSPTEQQQWQDRLQQWG------------  149 (352)
T ss_pred             hhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCChHHHHHHHHHHHhcC------------
Confidence            367899999999998765 333344444433 1   26899999999999975322223333333333            


Q ss_pred             CCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          219 MSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       219 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                           .+++++||+++.|++++++.|...
T Consensus       150 -----~~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        150 -----YQPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             -----CeEEEEEcCCCCCHHHHhhhhccc
Confidence                 678999999999999999988653

>KOG1534|consensus

Probab=98.99  E-value=2.7e-10  Score=83.32  Aligned_cols=88  Identities=13%  Similarity=0.251  Sum_probs=58.6

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccc---cceEEEEEECCC---hhhh-HhhHHHHHHHHhccCCCCCcEEEEEe
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESL---ASSIVFLVDTSD---RERF-EESKSELQCLLTDESLASCPVLILGN  185 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~---~d~ii~v~d~~~---~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~n  185 (249)
                      +..++++|+||+.+.-.-...+++++.++..   .-++++++|+.=   ...| .....-+..+..    ..+|.|-|++
T Consensus        97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls  172 (273)
T KOG1534|consen   97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS  172 (273)
T ss_pred             cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence            4568999999988766655556666555544   567778888743   2222 212222222222    5799999999


Q ss_pred             cCCCCCCCCHHHHHHHhhh
Q psy871          186 KIDKHGAASEEEIRQYFGL  204 (249)
Q Consensus       186 K~Dl~~~~~~~~~~~~~~~  204 (249)
                      |+||....++++++.++.-
T Consensus       173 KMDLlk~~~k~~l~~Fl~~  191 (273)
T KOG1534|consen  173 KMDLLKDKNKKELERFLNP  191 (273)
T ss_pred             HHHHhhhhhHHHHHHhcCC
Confidence            9999988777888877753

>KOG1491|consensus

Probab=98.98  E-value=8.4e-10  Score=86.43  Aligned_cols=108  Identities=19%  Similarity=0.176  Sum_probs=74.1

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      |=...++++++||.||+|||||+|+|+.....   .++.|+++....+.++    ...+        .-+...+      
T Consensus        15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~----d~Rf--------d~l~~~Y------   76 (391)
T KOG1491|consen   15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVP----DSRF--------DLLCPIY------   76 (391)
T ss_pred             cCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecC----chHH--------HHHHHhc------
Confidence            33456779999999999999999999998765   6778888887776321    1111        0000000      


Q ss_pred             cccCCcccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCC
Q psy871           93 QPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSD  155 (249)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~  155 (249)
                          +.          -......+.++|.+|.-.-. +-...+-+|++.++.+|+++.|+++..
T Consensus        77 ----~~----------~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   77 ----GP----------KSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ----CC----------cceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence                00          01234568899999965433 334466789999999999999998854

>KOG0460|consensus

Probab=98.97  E-value=3.3e-09  Score=83.20  Aligned_cols=163  Identities=15%  Similarity=0.118  Sum_probs=99.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +++.+|+-+|+...|||||.-+++.-........ ......+              |.+              ++ ....
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~-~~kydeI--------------D~A--------------PE-EkaR  101 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAK-FKKYDEI--------------DKA--------------PE-EKAR  101 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccc-cccHhhh--------------hcC--------------hh-hhhc
Confidence            6778999999999999999999975322100000 0000000              000              00 0022


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                      +.+.+..+..|+.....+--.|+||+..|-++.-      .....-|..|+|+.+++..-.+.-+ .+.- .++.  .-.
T Consensus       102 GITIn~aHveYeTa~RhYaH~DCPGHADYIKNMI------tGaaqMDGaILVVaatDG~MPQTrE-HlLL-ArQV--GV~  171 (449)
T KOG0460|consen  102 GITINAAHVEYETAKRHYAHTDCPGHADYIKNMI------TGAAQMDGAILVVAATDGPMPQTRE-HLLL-ARQV--GVK  171 (449)
T ss_pred             cceEeeeeeeeeccccccccCCCCchHHHHHHhh------cCccccCceEEEEEcCCCCCcchHH-HHHH-HHHc--CCc
Confidence            3344444455666667788899999988876655      6778899999999999954443322 1111 1121  224


Q ss_pred             cEEEEEecCCCCCC-CCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecc
Q psy871          179 PVLILGNKIDKHGA-ASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLM  233 (249)
Q Consensus       179 p~ivv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  233 (249)
                      .+++.+||.|++++ ...    -++++.+..+.            +.....|++.-||+.
T Consensus       172 ~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g------------f~Gd~~PvI~GSAL~  219 (449)
T KOG0460|consen  172 HIVVFINKVDLVDDPEMLELVEMEIRELLSEFG------------FDGDNTPVIRGSALC  219 (449)
T ss_pred             eEEEEEecccccCCHHHHHHHHHHHHHHHHHcC------------CCCCCCCeeecchhh
Confidence            57889999999953 222    24555555555            666778999988874

>cd01858 NGP_1 NGP-1

Probab=98.94  E-value=4.3e-09  Score=76.39  Aligned_cols=90  Identities=14%  Similarity=0.130  Sum_probs=60.5

Q ss_pred             ccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCC
Q psy871          139 TDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSE  218 (249)
Q Consensus       139 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                      +.++.+|++++|+|+.++.....  ..+.+.+... ..++|+++|+||+|+..+   ++...++..+..           
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~-~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~~-----------   66 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKE-KPHKHLIFVLNKCDLVPT---WVTARWVKILSK-----------   66 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccC--HHHHHHHHhc-cCCCCEEEEEEchhcCCH---HHHHHHHHHHhc-----------
Confidence            45678999999999998643221  1333343321 246899999999999643   334444444331           


Q ss_pred             CCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          219 MSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       219 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                       . ....++++||+++.|++++++.+.+.
T Consensus        67 -~-~~~~~~~iSa~~~~~~~~L~~~l~~~   93 (157)
T cd01858          67 -E-YPTIAFHASINNPFGKGSLIQLLRQF   93 (157)
T ss_pred             -C-CcEEEEEeeccccccHHHHHHHHHHH
Confidence             1 11336899999999999999998765

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0466|consensus

Probab=98.93  E-value=1.1e-09  Score=84.54  Aligned_cols=114  Identities=13%  Similarity=0.144  Sum_probs=77.2

Q ss_pred             EEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCC
Q psy871          115 IVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAAS  194 (249)
Q Consensus       115 ~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  194 (249)
                      .+.++|+||++-..+..-      +.....|+.++++..+..+.-....+.+..+-   .+.-+.++++-||+|+..+..
T Consensus       126 HVSfVDCPGHDiLMaTML------nGaAvmDaalLlIA~NEsCPQPQTsEHLaave---iM~LkhiiilQNKiDli~e~~  196 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATML------NGAAVMDAALLLIAGNESCPQPQTSEHLAAVE---IMKLKHIIILQNKIDLIKESQ  196 (466)
T ss_pred             EEEeccCCchHHHHHHHh------cchHHhhhhhhhhhcCCCCCCCchhhHHHHHH---HhhhceEEEEechhhhhhHHH
Confidence            477999999986654443      66677899999998887655433333333321   113478999999999987433


Q ss_pred             H-HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          195 E-EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       195 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      . ++.++..+.+.           .......|++++||.-++|++-+.+++.+.|
T Consensus       197 A~eq~e~I~kFi~-----------~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  197 ALEQHEQIQKFIQ-----------GTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             HHHHHHHHHHHHh-----------ccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            2 23333333322           1223457999999999999999999998865

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.93  E-value=1.7e-09  Score=75.10  Aligned_cols=71  Identities=14%  Similarity=0.100  Sum_probs=42.8

Q ss_pred             cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871          142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG  221 (249)
Q Consensus       142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (249)
                      +.++.++.|++.+...++...  |...+. .......|.++++||+|+.++.   +   ..+...               
T Consensus        45 ~s~~~~~~v~~~~~~~s~~~~--~~~~i~-~~~k~dl~~~~~~nk~dl~~~~---~---~~~~~~---------------  100 (124)
T smart00010       45 ESFDVVLQCWRVDDRDSADNK--NVPEVL-VGNKSDLPILVGGNRDVLEEER---Q---VATEEG---------------  100 (124)
T ss_pred             CCCCEEEEEEEccCHHHHHHH--hHHHHH-hcCCCCCcEEEEeechhhHhhC---c---CCHHHH---------------
Confidence            445666667777777666544  443333 2233568899999999974321   1   111111               


Q ss_pred             CceeEEEeeeccccchH
Q psy871          222 RPIELFMCSVLMRQGYG  238 (249)
Q Consensus       222 ~~~~~~~~Sa~~g~gv~  238 (249)
                        .+++++|++++.|+.
T Consensus       101 --~~~~~~s~~~~~~~~  115 (124)
T smart00010      101 --LEFAETSAKTPEEGE  115 (124)
T ss_pred             --HHHHHHhCCCcchhh
Confidence              346678889988874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.89  E-value=5.7e-09  Score=83.54  Aligned_cols=85  Identities=15%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             ccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCCCCcEEEEEecCCCCCCC-CHHHHHHHhhhcccccCcccCCCCC
Q psy871          141 ESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLASCPVLILGNKIDKHGAA-SEEEIRQYFGLYGLTTGKVATPRSE  218 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  218 (249)
                      ...+|.+++|+|+.++..+... ..++... ..   .++|+++|+||+|+.+.. ...++.+.++...            
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g------------  141 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALYRAIG------------  141 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCC------------
Confidence            4789999999999887665443 3444433 22   679999999999996321 1112222232222            


Q ss_pred             CCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          219 MSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       219 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                           .+++++||+++.|++++++.+..
T Consensus       142 -----~~v~~vSA~~g~gi~~L~~~l~g  164 (298)
T PRK00098        142 -----YDVLELSAKEGEGLDELKPLLAG  164 (298)
T ss_pred             -----CeEEEEeCCCCccHHHHHhhccC
Confidence                 68999999999999999988754

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.88  E-value=8.3e-09  Score=82.17  Aligned_cols=85  Identities=15%  Similarity=0.046  Sum_probs=61.4

Q ss_pred             ccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCC
Q psy871          141 ESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEM  219 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (249)
                      +..+|.+++|+|+.++. ++..+..++..+..    .++|+++|+||+|+.+...............             
T Consensus        76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g-------------  138 (287)
T cd01854          76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEALALG-------------  138 (287)
T ss_pred             EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHHhCC-------------
Confidence            57899999999999887 66666666554432    5799999999999976411111122122222             


Q ss_pred             CCCceeEEEeeeccccchHHHHHHHhh
Q psy871          220 SGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       220 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                          .+++++||+++.|+++++..|..
T Consensus       139 ----~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         139 ----YPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             ----CeEEEEECCCCccHHHHHhhhcc
Confidence                68999999999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0468|consensus

Probab=98.88  E-value=1e-08  Score=86.91  Aligned_cols=141  Identities=14%  Similarity=0.197  Sum_probs=82.9

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      ..+.+-++++++|+-.+|||+|+..|.........+....   ...+    .+..+               ...++... 
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~---~lry----tD~l~---------------~E~eRg~s-  179 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEA---DLRY----TDTLF---------------YEQERGCS-  179 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccc---cccc----cccch---------------hhHhcCce-
Confidence            4456677999999999999999999975443211110000   0000    00000               00000000 


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                       ....-....-.-.......+.+.|||||-.|..-..      ..+..+|++++|+|+.+.-.+..-+ .++...    .
T Consensus       180 -IK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~t------a~l~~sDgvVlvvDv~EGVmlntEr-~ikhai----q  247 (971)
T KOG0468|consen  180 -IKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETT------ASLRLSDGVVLVVDVAEGVMLNTER-IIKHAI----Q  247 (971)
T ss_pred             -EeecceEEEEecCcCceeeeeeecCCCcccchHHHH------HHhhhcceEEEEEEcccCceeeHHH-HHHHHH----h
Confidence             000000111122334556788999999988876665      6678899999999999876554322 333333    3


Q ss_pred             CCCcEEEEEecCCCCC
Q psy871          176 ASCPVLILGNKIDKHG  191 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~  191 (249)
                      .+.|+++|+||+|...
T Consensus       248 ~~~~i~vviNKiDRLi  263 (971)
T KOG0468|consen  248 NRLPIVVVINKVDRLI  263 (971)
T ss_pred             ccCcEEEEEehhHHHH
Confidence            6899999999999743

>cd01855 YqeH YqeH

Probab=98.87  E-value=1.5e-08  Score=76.01  Aligned_cols=94  Identities=17%  Similarity=0.156  Sum_probs=59.3

Q ss_pred             ccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCC
Q psy871          139 TDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRS  217 (249)
Q Consensus       139 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
                      .+++.+|++++|+|++++..-..  ..+   ...  ..++|+++|+||+|+... ........+.+....         .
T Consensus        30 ~~~~~ad~il~VvD~~~~~~~~~--~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~---------~   93 (190)
T cd01855          30 SISPKKALVVHVVDIFDFPGSLI--PRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAA---------A   93 (190)
T ss_pred             hcccCCcEEEEEEECccCCCccc--hhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHH---------h
Confidence            66788999999999987542111  112   111  256899999999999753 223333333310000         0


Q ss_pred             CCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          218 EMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       218 ~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .......+++++||++|.|+++++++|.+.+
T Consensus        94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          94 GLGLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             hcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            0011113689999999999999999998754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.87  E-value=4.9e-08  Score=78.53  Aligned_cols=177  Identities=17%  Similarity=0.177  Sum_probs=92.1

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhc-CCcccc--
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKD-DRLAQP--   94 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~-~~~~~~--   94 (249)
                      +...++++|++|+||||++..|......                 ..+++.+.+.|.-...+.  ...+.. ...+..  
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~-----------------~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~  175 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKA-----------------QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ  175 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh-----------------cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe
Confidence            4568999999999999999999753211                 233455555444222111  111111 011100  


Q ss_pred             cCCcccceeceec--cccccceEEEEEeCCCchhhhh-hHHHHhhhhccc-----cccceEEEEEECCChhhhHhhHHHH
Q psy871           95 VPTLHPTRRVWKD--YFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDE-----SLASSIVFLVDTSDRERFEESKSEL  166 (249)
Q Consensus        95 ~~~~~~~~~~~~~--~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~-----~~~d~ii~v~d~~~~~~~~~~~~~~  166 (249)
                      ..+..........  .....+..++++||||...... ..+.+..+....     ...+-.++|+|++...  ..+. ..
T Consensus       176 ~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~a  252 (318)
T PRK10416        176 KEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-QA  252 (318)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-HH
Confidence            0010000000000  1112445699999999654322 233344433322     3467889999999632  2222 22


Q ss_pred             HHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871          167 QCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF  241 (249)
Q Consensus       167 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  241 (249)
                      ..+..    .-.+.-+|+||.|...  ..-.+.+......                 .|+..++  +|++++++-
T Consensus       253 ~~f~~----~~~~~giIlTKlD~t~--~~G~~l~~~~~~~-----------------~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        253 KAFHE----AVGLTGIILTKLDGTA--KGGVVFAIADELG-----------------IPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             HHHHh----hCCCCEEEEECCCCCC--CccHHHHHHHHHC-----------------CCEEEEe--CCCChhhCc
Confidence            22221    1235578899999543  2334555555545                 7787787  888887753

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.87  E-value=3.9e-08  Score=84.43  Aligned_cols=124  Identities=10%  Similarity=-0.013  Sum_probs=67.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +.+|+|+|.+|+||||++|.|++...........                                            ..
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~--------------------------------------------~T  153 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM--------------------------------------------GT  153 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCC--------------------------------------------Cc
Confidence            3589999999999999999998765332111000                                            00


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhh----hHHHHhhhhcccc--ccceEEEEEECCChhhh-H--hhHHHHHHHHh
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEE----SKSELQCLLTDES--LASSIVFLVDTSDRERF-E--ESKSELQCLLT  171 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~----~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~-~--~~~~~~~~~~~  171 (249)
                      +.. ........+..+.++||||......    ...........+.  ..|++++|...+..... .  .+.+.+.++..
T Consensus       154 Tr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG  232 (763)
T TIGR00993       154 TSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLG  232 (763)
T ss_pred             eEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhC
Confidence            000 0000011234689999999764321    1122222222322  47999999877543221 1  12223333322


Q ss_pred             ccCCCCCcEEEEEecCCCCC
Q psy871          172 DESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      ..  --..+|||.|+.|...
T Consensus       233 ~~--Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       233 PS--IWFNAIVTLTHAASAP  250 (763)
T ss_pred             HH--hHcCEEEEEeCCccCC
Confidence            11  1257899999999875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.86  E-value=7.2e-09  Score=73.79  Aligned_cols=81  Identities=20%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             hhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCC
Q psy871          136 CLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATP  215 (249)
Q Consensus       136 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (249)
                      .+...+..+|++++|+|+.++.+....  .+.+++.... .++|+++|+||+|+..+....++.+.++...         
T Consensus         4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~---------   71 (141)
T cd01857           4 QLWRVVERSDIVVQIVDARNPLLFRPP--DLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEG---------   71 (141)
T ss_pred             HHHHHHhhCCEEEEEEEccCCcccCCH--HHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcC---------
Confidence            455677899999999999887654422  3344433321 4789999999999965322223333333222         


Q ss_pred             CCCCCCCceeEEEeeeccccc
Q psy871          216 RSEMSGRPIELFMCSVLMRQG  236 (249)
Q Consensus       216 ~~~~~~~~~~~~~~Sa~~g~g  236 (249)
                              .+++++||+++.+
T Consensus        72 --------~~ii~iSa~~~~~   84 (141)
T cd01857          72 --------IVVVFFSALKENA   84 (141)
T ss_pred             --------CeEEEEEecCCCc
Confidence                    5789999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.86  E-value=5.6e-08  Score=78.48  Aligned_cols=101  Identities=17%  Similarity=0.170  Sum_probs=59.0

Q ss_pred             ceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          113 DAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      +..++++||+|.... ......+..+... ...|.+++|+|+.....   .......+..    .-..--+++||.|...
T Consensus       222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~-~~pd~~iLVl~a~~g~d---~~~~a~~f~~----~~~~~giIlTKlD~~~  293 (336)
T PRK14974        222 GIDVVLIDTAGRMHTDANLMDELKKIVRV-TKPDLVIFVGDALAGND---AVEQAREFNE----AVGIDGVILTKVDADA  293 (336)
T ss_pred             CCCEEEEECCCccCCcHHHHHHHHHHHHh-hCCceEEEeeccccchh---HHHHHHHHHh----cCCCCEEEEeeecCCC
Confidence            345999999996542 2233334433332 35788899999976432   1112333321    1234578899999754


Q ss_pred             CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871          192 AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR  242 (249)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  242 (249)
                      .  .-.+.+......                 .|+..++  +|++++++..
T Consensus       294 ~--~G~~ls~~~~~~-----------------~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        294 K--GGAALSIAYVIG-----------------KPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             C--ccHHHHHHHHHC-----------------cCEEEEe--CCCChhhccc
Confidence            2  233334344444                 6777777  7999987653

>cd01856 YlqF YlqF

Probab=98.84  E-value=1.6e-08  Score=74.50  Aligned_cols=90  Identities=12%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCccc
Q psy871          134 LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA  213 (249)
Q Consensus       134 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      ..+....++.+|++++|+|++++......  .+...+     .+.|+++|+||+|+.++   ++...+.+...       
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~---~~~~~~~~~~~-------   72 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADP---KKTKKWLKYFE-------   72 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCCh---HHHHHHHHHHH-------
Confidence            34445677889999999999876443221  122221     35799999999999643   22222222211       


Q ss_pred             CCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       214 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                             ....+++.+||+++.|++++.+.+...
T Consensus        73 -------~~~~~vi~iSa~~~~gi~~L~~~l~~~   99 (171)
T cd01856          73 -------SKGEKVLFVNAKSGKGVKKLLKAAKKL   99 (171)
T ss_pred             -------hcCCeEEEEECCCcccHHHHHHHHHHH
Confidence                   011468999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00092 GTP-binding protein YchF

Probab=98.82  E-value=1.2e-08  Score=82.75  Aligned_cols=101  Identities=18%  Similarity=0.121  Sum_probs=67.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCC-C---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRL-A---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~-~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+++|+|.|++|||||+|+|++... .   ++.+|+.+..+.+.++..             .-..+..+..         
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~-------------r~d~L~~~~~---------   60 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDP-------------RLDLLAIYIK---------   60 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechh-------------HHHHHHHHhC---------
Confidence            6899999999999999999998876 3   477788888877732110             0001111110         


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTS  154 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~  154 (249)
                              ..  ......+.++|.||...-. ........++..++.+|++++|+|..
T Consensus        61 --------~~--~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        61 --------PE--KVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             --------Cc--CcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence                    00  0122356788999965432 22334567889999999999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.81  E-value=3.6e-08  Score=80.17  Aligned_cols=89  Identities=16%  Similarity=0.101  Sum_probs=64.6

Q ss_pred             ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871          141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS  220 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (249)
                      ....|.+++|++.....++..+..++... ..   .++|+++|+||+|+......+...++.+.+.              
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~--------------  179 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYR--------------  179 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHH--------------
Confidence            36689999999998877887777776543 22   6799999999999976432233333333221              


Q ss_pred             CCceeEEEeeeccccchHHHHHHHhhh
Q psy871          221 GRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       221 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ....+++++||+++.|+++++++|...
T Consensus       180 ~~g~~v~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        180 NIGYRVLMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence            012689999999999999999998754

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.81  E-value=1.9e-08  Score=72.83  Aligned_cols=81  Identities=17%  Similarity=0.219  Sum_probs=54.4

Q ss_pred             ceEEEEEECCChhhhHhhHHHHH-HHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCc
Q psy871          145 SSIVFLVDTSDRERFEESKSELQ-CLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRP  223 (249)
Q Consensus       145 d~ii~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (249)
                      |++++|+|+.++.+....  ++. ..+..   .++|+++|+||+|+...   ++..+++..+.            . ...
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~---~~~~~~~~~~~------------~-~~~   59 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPK---EVLRKWLAYLR------------H-SYP   59 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCH---HHHHHHHHHHH------------h-hCC
Confidence            688999999887655432  333 22222   57999999999999653   33333322221            0 012


Q ss_pred             eeEEEeeeccccchHHHHHHHhh
Q psy871          224 IELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       224 ~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      .+++++||++|.|++++.+.+.+
T Consensus        60 ~~ii~vSa~~~~gi~~L~~~i~~   82 (155)
T cd01849          60 TIPFKISATNGQGIEKKESAFTK   82 (155)
T ss_pred             ceEEEEeccCCcChhhHHHHHHH
Confidence            56899999999999999998865

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.78  E-value=2.8e-07  Score=77.53  Aligned_cols=42  Identities=24%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             HhHHHHhhhccc--ccceecceEEEeccCCcchHHHHHHHhcCC
Q psy871            4 IWDWFTGVLGYL--GLWTKSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus         4 ~~~~~~~~~~~~--~~~~~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +|..|-....--  .....+..|+|+|..++|||||+.+|.+.+
T Consensus         6 lW~siL~ev~~~~~~~~~~~k~vlvlG~~~~GKttli~~L~~~e   49 (472)
T PF05783_consen    6 LWSSILSEVSNSSSTKLPSEKSVLVLGDKGSGKTTLIARLQGIE   49 (472)
T ss_pred             HHHHHHHHHHhhccccCCCCceEEEEeCCCCchHHHHHHhhccC
Confidence            788887666422  122456799999999999999999997654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG1487|consensus

Probab=98.77  E-value=4.2e-08  Score=74.36  Aligned_cols=181  Identities=19%  Similarity=0.233  Sum_probs=98.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC---CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR---LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .++.++|-|.+|||||+..|++..   .++..+|.....+.+.+  ...++++...|+.  -.           ....+.
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y--~gaKiqlldlpgi--ie-----------gakdgk  124 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY--KGAKIQLLDLPGI--IE-----------GAKDGK  124 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec--cccceeeecCcch--hc-----------ccccCC
Confidence            389999999999999999999754   23555666666666532  3445555444432  10           011133


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHH-HHhh------------------------------------hhc-c
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS-ELQC------------------------------------LLT-D  140 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~~~~------------------------------------~~~-~  140 (249)
                      ++.+... ..-+.++..+++.|.--.-.-..+.+ .+..                                    .+. +
T Consensus       125 grg~qvi-avartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~ey  203 (358)
T KOG1487|consen  125 GRGKQVI-AVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEY  203 (358)
T ss_pred             CCccEEE-EEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHh
Confidence            3333332 22345667777888754222222221 1100                                    000 0


Q ss_pred             ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871          141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS  220 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (249)
                      ......+.+=+|++..+        +...+ +.+...+|++.++||+|...-   +++.-..                  
T Consensus       204 R~hsAdi~Lr~DaT~Dd--------LIdvV-egnr~yVp~iyvLNkIdsISi---EELdii~------------------  253 (358)
T KOG1487|consen  204 RIHSADIALRFDATADD--------LIDVV-EGNRIYVPCIYVLNKIDSISI---EELDIIY------------------  253 (358)
T ss_pred             hhcchheeeecCcchhh--------hhhhh-ccCceeeeeeeeecccceeee---eccceee------------------
Confidence            11123333444443332        11111 111246899999999997642   2222111                  


Q ss_pred             CCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          221 GRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       221 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                       .-...+++||-.+.|++++++.+.+.++
T Consensus       254 -~iphavpISA~~~wn~d~lL~~mweyL~  281 (358)
T KOG1487|consen  254 -TIPHAVPISAHTGWNFDKLLEKMWEYLK  281 (358)
T ss_pred             -eccceeecccccccchHHHHHHHhhcch
Confidence             1245899999999999999998887653

>KOG0448|consensus

Probab=98.77  E-value=1.8e-07  Score=79.78  Aligned_cols=165  Identities=19%  Similarity=0.213  Sum_probs=89.4

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEE-cCCCCchhHH--HHHHhcCCc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFL-GLDNAGKTTL--LHMLKDDRL   91 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~-g~~~~Gkssl--~~~l~~~~~   91 (249)
                      +..++.||++.|..++||||++|+++...+.  ...|+......+..   ..+...+. -....+|.+.  ++.+...--
T Consensus       105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Veg---adG~e~vl~~~~s~ek~d~~ti~~~~haL~  181 (749)
T KOG0448|consen  105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEG---ADGAEAVLATEGSEEKIDMKTINQLAHALK  181 (749)
T ss_pred             HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecc---cCCcceeeccCCCcccccHHHHhHHHHhcC
Confidence            3577889999999999999999999987754  34455544444432   23333332 2223344333  332222111


Q ss_pred             ccccCCcccceec-eecc-ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHH
Q psy871           92 AQPVPTLHPTRRV-WKDY-FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCL  169 (249)
Q Consensus        92 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~  169 (249)
                      .....+....... |+.. ..--...+.++|.||.+.-.....+.-   .....+|++|+|..+.+.-+..... .+...
T Consensus       182 ~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid---~~cldaDVfVlV~NaEntlt~sek~-Ff~~v  257 (749)
T KOG0448|consen  182 PDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWID---SFCLDADVFVLVVNAENTLTLSEKQ-FFHKV  257 (749)
T ss_pred             cccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHH---HHhhcCCeEEEEecCccHhHHHHHH-HHHHh
Confidence            1111122221111 2111 000011477999999775544444322   3445699999999998864444321 22222


Q ss_pred             HhccCCCCCcEEEEEecCCCCCC
Q psy871          170 LTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       170 ~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                       ..   .+..++++.||.|....
T Consensus       258 -s~---~KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  258 -SE---EKPNIFILNNKWDASAS  276 (749)
T ss_pred             -hc---cCCcEEEEechhhhhcc
Confidence             11   34457788889998653

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.76  E-value=1.3e-07  Score=75.42  Aligned_cols=28  Identities=25%  Similarity=0.335  Sum_probs=24.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      .-...|+++|++|+|||||+|.|++...
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l   48 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSL   48 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhc
Confidence            3467899999999999999999987643

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.74  E-value=5.3e-08  Score=72.14  Aligned_cols=86  Identities=19%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA  193 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  193 (249)
                      ...+++.++|........ .....+...-..+.++.|+|+.+-.........+...++      ..-++++||+|+.++.
T Consensus        85 ~d~IiIE~sG~a~p~~l~-~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~------~ADvIvlnK~D~~~~~  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLI-LQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA------FADVIVLNKIDLVSDE  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHH-HHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC------T-SEEEEE-GGGHHHH
T ss_pred             cCEEEECCccccccchhh-hccccccccccccceeEEeccccccccccchhhhhhcch------hcCEEEEeccccCChh
Confidence            345667888855444441 112233334567899999999775333333334433332      3348889999998754


Q ss_pred             -CHHHHHHHhhhcc
Q psy871          194 -SEEEIRQYFGLYG  206 (249)
Q Consensus       194 -~~~~~~~~~~~~~  206 (249)
                       ..+.+.+.++.++
T Consensus       158 ~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  158 QKIERVREMIRELN  171 (178)
T ss_dssp             --HHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHC
Confidence             2366777777665

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.74  E-value=5.7e-08  Score=70.44  Aligned_cols=71  Identities=18%  Similarity=0.180  Sum_probs=41.2

Q ss_pred             ceEEEEEeCCCchhhhhhHHHH--hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSEL--QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~--~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      +...+++|++|...-....+..  ...+......+.++.++|+.+......-...+.+-+.      ..-++++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~------~ad~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA------FADRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH------HCCEEEEecccC
Confidence            3457889999965444443321  2234556778999999998764332211112222211      233678999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.73  E-value=6.1e-08  Score=76.90  Aligned_cols=90  Identities=12%  Similarity=0.114  Sum_probs=60.9

Q ss_pred             HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCccc
Q psy871          134 LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA  213 (249)
Q Consensus       134 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      +.+....++.+|++++|+|+..+.+....  .+.+++     .++|+++|+||+|+.+.   .+...+.+.+..      
T Consensus        12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-----~~kp~IiVlNK~DL~~~---~~~~~~~~~~~~------   75 (276)
T TIGR03596        12 RREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-----GNKPRLIVLNKADLADP---AVTKQWLKYFEE------   75 (276)
T ss_pred             HHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-----CCCCEEEEEEccccCCH---HHHHHHHHHHHH------
Confidence            34455677889999999999876544332  333332     36899999999999643   223333222210      


Q ss_pred             CCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       214 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                              ...+++.+||+++.|++++.+.+.+.
T Consensus        76 --------~~~~vi~iSa~~~~gi~~L~~~i~~~  101 (276)
T TIGR03596        76 --------KGIKALAINAKKGKGVKKIIKAAKKL  101 (276)
T ss_pred             --------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence                    01468999999999999998888764

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1954|consensus

Probab=98.73  E-value=2e-07  Score=74.25  Aligned_cols=151  Identities=20%  Similarity=0.191  Sum_probs=82.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC----CCCCCCCcc--------cceeeeeeeeceEEEE-cCCCCchhHHHHHH
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPI--------LGYLGLWTKSGKLLFL-GLDNAGKTTLLHML   86 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~----~~~~t~~~~--------~~~~~~~~~~~~~~~~-g~~~~Gkssl~~~l   86 (249)
                      ..+-|+++|+=..||||+++-|+..++.    .+.||...-        .+.+    +.....+. ..+..|-+.|=+++
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~i----pGnal~vd~~~pF~gL~~FG~af  132 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSI----PGNALVVDAKKPFRGLNKFGNAF  132 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCccccc----CCceeeecCCCchhhhhhhHHHH
Confidence            3567999999999999999999988876    233332211        1111    11111111 13344444443333


Q ss_pred             hcCCcccccCCcccceeceeccccc-cceEEEEEeCCCchhhhhh--HH---HHhhhhccccccceEEEEEECCChhhhH
Q psy871           87 KDDRLAQPVPTLHPTRRVWKDYFPA-VDAIVFLVDTSDRERFEES--KS---ELQCLLTDESLASSIVFLVDTSDRERFE  160 (249)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~D~~g~~~~~~~--~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~  160 (249)
                      .+.-..              ..+++ .-..+.++||||.-+-+..  .+   .-...-....++|.|+++||+...+--.
T Consensus       133 lnRf~c--------------sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsd  198 (532)
T KOG1954|consen  133 LNRFMC--------------SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISD  198 (532)
T ss_pred             HHHHHH--------------hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccH
Confidence            321110              00111 1124789999993321111  11   0111225678999999999998765544


Q ss_pred             hhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          161 ESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      +..+.+..+    ..+.=.+-||+||+|.++.
T Consensus       199 Ef~~vi~aL----kG~EdkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  199 EFKRVIDAL----KGHEDKIRVVLNKADQVDT  226 (532)
T ss_pred             HHHHHHHHh----hCCcceeEEEeccccccCH
Confidence            444444444    2255667788999998863

>KOG1707|consensus

Probab=98.72  E-value=3.3e-07  Score=76.99  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=49.2

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      +....+++-|.+.. .......      .. ..||+++++||++++.+|.............   ...|+++|++|+|+.
T Consensus       471 g~~k~LiL~ei~~~-~~~~l~~------ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlD  539 (625)
T KOG1707|consen  471 GQQKYLILREIGED-DQDFLTS------KE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLD  539 (625)
T ss_pred             cccceEEEeecCcc-ccccccC------cc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccc
Confidence            44456777776643 1111111      11 6799999999999999999877655554332   789999999999996


Q ss_pred             C
Q psy871          191 G  191 (249)
Q Consensus       191 ~  191 (249)
                      +
T Consensus       540 e  540 (625)
T KOG1707|consen  540 E  540 (625)
T ss_pred             h
Confidence            5

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.70  E-value=3.4e-07  Score=72.23  Aligned_cols=178  Identities=15%  Similarity=0.146  Sum_probs=90.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhc-CCcccc-
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKD-DRLAQP-   94 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~-~~~~~~-   94 (249)
                      .+...++++|++|+||||++..|...-..                 ...++.++..|.-.....  +..+.. ...... 
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~-----------------~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~  132 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKK-----------------QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIK  132 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHh-----------------cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEe
Confidence            34568999999999999999998642111                 223445554443211111  111111 111100 


Q ss_pred             -cCCcccceecee--ccccccceEEEEEeCCCchhhhhh-HHHHhhhhcccc-----ccceEEEEEECCChhhhHhhHHH
Q psy871           95 -VPTLHPTRRVWK--DYFPAVDAIVFLVDTSDRERFEES-KSELQCLLTDES-----LASSIVFLVDTSDRERFEESKSE  165 (249)
Q Consensus        95 -~~~~~~~~~~~~--~~~~~~~~~~~v~D~~g~~~~~~~-~~~~~~~~~~~~-----~~d~ii~v~d~~~~~~~~~~~~~  165 (249)
                       ..+.........  ......+..++++||+|....... ...+..+.....     .+|.+++|+|++...  ..+. .
T Consensus       133 ~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~  209 (272)
T TIGR00064       133 QKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-Q  209 (272)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-H
Confidence             000000000000  011124467999999996543222 223333333322     488999999997632  2222 2


Q ss_pred             HHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871          166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF  241 (249)
Q Consensus       166 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  241 (249)
                      ...+.+.    -.+.-+|+||.|-...  .-.+.+......                 .|+..++  +|++++++.
T Consensus       210 ~~~f~~~----~~~~g~IlTKlDe~~~--~G~~l~~~~~~~-----------------~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       210 AKVFNEA----VGLTGIILTKLDGTAK--GGIILSIAYELK-----------------LPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             HHHHHhh----CCCCEEEEEccCCCCC--ccHHHHHHHHHC-----------------cCEEEEe--CCCChHhCc
Confidence            3333221    1356788999997542  334444444444                 6777777  788887764

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01858 NGP_1 NGP-1

Probab=98.65  E-value=4.4e-08  Score=71.09  Aligned_cols=26  Identities=27%  Similarity=0.583  Sum_probs=20.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +..+|+++|+||+|||||+|+|.+..
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~  126 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKK  126 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCC
Confidence            45678889999999999999987644

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0082|consensus

Probab=98.64  E-value=8.9e-07  Score=71.14  Aligned_cols=134  Identities=14%  Similarity=0.103  Sum_probs=84.4

Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhh----------HhhHHHHHHHHh
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF----------EESKSELQCLLT  171 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----------~~~~~~~~~~~~  171 (249)
                      .+.....+.-.+..+.++|.+|+..-..-+-      .....++++++|++.++.+..          ......+..+..
T Consensus       183 ~GI~e~~F~~k~~~f~~~DvGGQRseRrKWi------hcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n  256 (354)
T KOG0082|consen  183 TGIVEVEFTIKGLKFRMFDVGGQRSERKKWI------HCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN  256 (354)
T ss_pred             CCeeEEEEEeCCCceEEEeCCCcHHHhhhHH------HhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence            3333344444556688999999754333222      366789999999999874322          223345666777


Q ss_pred             ccCCCCCcEEEEEecCCCCC-----------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc
Q psy871          172 DESLASCPVLILGNKIDKHG-----------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR  234 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  234 (249)
                      .....+.++++.+||.|+..                 ....+++..+++.........       ..+.+-+..+.|..-
T Consensus       257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~-------~~k~iy~h~T~AtDT  329 (354)
T KOG0082|consen  257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKN-------KDKKIYVHFTCATDT  329 (354)
T ss_pred             CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcc-------cCCcceEEEEeeccH
Confidence            77777899999999999854                 112333433333222111111       114567788899999


Q ss_pred             cchHHHHHHHhhhc
Q psy871          235 QGYGDGFRWLANYI  248 (249)
Q Consensus       235 ~gv~~l~~~l~~~i  248 (249)
                      .+++.+|..+.+.|
T Consensus       330 ~nv~~vf~av~d~I  343 (354)
T KOG0082|consen  330 QNVQFVFDAVTDTI  343 (354)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998877643

>KOG1533|consensus

Probab=98.62  E-value=6.9e-09  Score=77.37  Aligned_cols=78  Identities=19%  Similarity=0.195  Sum_probs=47.8

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhcc---ccccceEEEEEEC---CChhhhHhh-HHHHHHHHhccCCCCCcEEE
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTD---ESLASSIVFLVDT---SDRERFEES-KSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~---~~~~d~ii~v~d~---~~~~~~~~~-~~~~~~~~~~~~~~~~p~iv  182 (249)
                      +.....++++|.||+-++..........++.   ....-+++.++|+   ++|..|-.. ---+..++.    ...|-|-
T Consensus        93 ~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVN  168 (290)
T KOG1533|consen   93 KPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVN  168 (290)
T ss_pred             hhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchh
Confidence            3345578999999977654444433333333   3445555667776   567666443 112233322    5789999


Q ss_pred             EEecCCCCC
Q psy871          183 LGNKIDKHG  191 (249)
Q Consensus       183 v~nK~Dl~~  191 (249)
                      |+.|+|+..
T Consensus       169 vlSK~Dl~~  177 (290)
T KOG1533|consen  169 VLSKADLLK  177 (290)
T ss_pred             hhhHhHHHH
Confidence            999999865

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.62  E-value=1.8e-07  Score=74.60  Aligned_cols=90  Identities=13%  Similarity=0.157  Sum_probs=60.8

Q ss_pred             HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCccc
Q psy871          134 LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA  213 (249)
Q Consensus       134 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  213 (249)
                      +.+....++.+|++++|+|+..+.+....  .+.+.+     .++|+++|+||+|+.+.   .....+.+.+..      
T Consensus        15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~-----~~kp~iiVlNK~DL~~~---~~~~~~~~~~~~------   78 (287)
T PRK09563         15 RREIKENLKLVDVVIEVLDARIPLSSENP--MIDKII-----GNKPRLLILNKSDLADP---EVTKKWIEYFEE------   78 (287)
T ss_pred             HHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh-----CCCCEEEEEEchhcCCH---HHHHHHHHHHHH------
Confidence            34455677889999999999876544332  333332     36899999999999643   222233222210      


Q ss_pred             CCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       214 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                              ...+++.+||+++.|++++.+.+.+.
T Consensus        79 --------~~~~vi~vSa~~~~gi~~L~~~l~~~  104 (287)
T PRK09563         79 --------QGIKALAINAKKGQGVKKILKAAKKL  104 (287)
T ss_pred             --------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence                    01568999999999999999887654

>KOG0459|consensus

Probab=98.61  E-value=1.4e-08  Score=81.45  Aligned_cols=193  Identities=17%  Similarity=0.103  Sum_probs=108.8

Q ss_pred             ccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      +..-+..+.+++++|+..+||||+-..+...--.....|.........-..........-.+..               .
T Consensus        72 ~~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn---------------~  136 (501)
T KOG0459|consen   72 CGEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTN---------------G  136 (501)
T ss_pred             ccCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCc---------------h
Confidence            3334577889999999999999988777532111111111111111100000001111111111               0


Q ss_pred             ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHh---hHHHHH
Q psy871           94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEE---SKSELQ  167 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~---~~~~~~  167 (249)
                      .....+.+......+++.....+.+.|+||+..|....-      ....++|.-++|+.+..   ...|..   .++...
T Consensus       137 EeR~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI------~GasqAD~~vLvisar~gefetgFerGgQTREha~  210 (501)
T KOG0459|consen  137 EERDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMI------GGASQADLAVLVISARKGEFETGFEKGGQTREHAM  210 (501)
T ss_pred             hhhhccceeeeeeEEEEecceeEEeeccCcccccchhhc------cccchhhhhhhhhhhhhchhhcccccccchhHHHH
Confidence            111333444555566777777899999999998876655      77889999999998843   233322   121211


Q ss_pred             HHHhccCCCCCcEEEEEecCCCCCCCCH--------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          168 CLLTDESLASCPVLILGNKIDKHGAASE--------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       168 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      ....   ..-...|+++||+|-+...+.        +.+..+++.+.           .....+..+++||..+|.++.+
T Consensus       211 Lakt---~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g-----------~n~~~d~~f~p~sg~tG~~~k~  276 (501)
T KOG0459|consen  211 LAKT---AGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLG-----------FNPKPDKHFVPVSGLTGANVKD  276 (501)
T ss_pred             HHHh---hccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhc-----------ccCCCCceeeecccccccchhh
Confidence            1111   145778999999998763332        23333444332           1223567899999999999987


Q ss_pred             HH
Q psy871          240 GF  241 (249)
Q Consensus       240 l~  241 (249)
                      ..
T Consensus       277 ~~  278 (501)
T KOG0459|consen  277 RT  278 (501)
T ss_pred             cc
Confidence            54

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.58  E-value=3.3e-07  Score=75.36  Aligned_cols=92  Identities=22%  Similarity=0.331  Sum_probs=59.8

Q ss_pred             ccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCC
Q psy871          139 TDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRS  217 (249)
Q Consensus       139 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
                      .....++++++|+|+.+...  .+...+.+..     .+.|+++|+||+|+.. ....+++.++++.....         
T Consensus        59 ~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~---------  122 (360)
T TIGR03597        59 SLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE---------  122 (360)
T ss_pred             hcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH---------
Confidence            44567899999999976431  1112333332     3689999999999975 33455555554322100         


Q ss_pred             CCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          218 EMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       218 ~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                       .......++++||++|.|++++++.|.+.
T Consensus       123 -~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 -LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             -cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence             11111358999999999999999998753

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1547|consensus

Probab=98.56  E-value=6.3e-07  Score=67.32  Aligned_cols=27  Identities=22%  Similarity=0.429  Sum_probs=23.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA   47 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~   47 (249)
                      +++|.|||.+|.|||||+|.|....+.
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~   72 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVS   72 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHh
Confidence            579999999999999999999876654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.56  E-value=1.2e-07  Score=69.55  Aligned_cols=28  Identities=32%  Similarity=0.470  Sum_probs=23.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      ....+++++|.||+|||||+|+|++...
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~  142 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRA  142 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCccc
Confidence            3347999999999999999999987544

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.56  E-value=7.4e-07  Score=71.60  Aligned_cols=97  Identities=14%  Similarity=0.038  Sum_probs=60.3

Q ss_pred             eEEEEEeCCCchhhhhhHHHHh--hhhccccccceEEEEEECCChhhhHh-hHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQ--CLLTDESLASSIVFLVDTSDRERFEE-SKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~--~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ...+++.++|...-........  ..+...-..|.++.|+|+.+...-.. .......-+      ...-++++||.|++
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi------a~AD~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL------AFADVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH------HhCcEEEEecccCC
Confidence            3477888988654433333221  12344556789999999988543322 222222222      23458999999999


Q ss_pred             CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeee
Q psy871          191 GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSV  231 (249)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  231 (249)
                      ++...+.+...++.++               +..+++.+|.
T Consensus       159 ~~~~l~~l~~~l~~ln---------------p~A~i~~~~~  184 (323)
T COG0523         159 DAEELEALEARLRKLN---------------PRARIIETSY  184 (323)
T ss_pred             CHHHHHHHHHHHHHhC---------------CCCeEEEccc
Confidence            8655666677777665               4577888777

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.56  E-value=6.9e-07  Score=68.58  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=22.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+-..|+|+|++++|||||+|+|++.
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~   30 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGT   30 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCC
Confidence            34458999999999999999999886

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.53  E-value=1.7e-06  Score=71.97  Aligned_cols=71  Identities=21%  Similarity=0.245  Sum_probs=41.8

Q ss_pred             ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      +..++++||+|..... .....+..+.. ...++.+++|+|++.......   ....+..    .-.+.-+|+||.|-..
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~-~~~p~e~lLVlda~~Gq~a~~---~a~~F~~----~~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAE-AIQPDNIIFVMDGSIGQAAEA---QAKAFKD----SVDVGSVIITKLDGHA  253 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhh-hcCCcEEEEEeccccChhHHH---HHHHHHh----ccCCcEEEEECccCCC
Confidence            4678999999965432 22333333332 345788999999976432222   2223311    2246678899999643

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.53  E-value=5.3e-06  Score=66.96  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=47.7

Q ss_pred             EEEEEeCCCchhhhhhHHHH--hhhhccccccceEEEEEECCChhhhHh-hHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          115 IVFLVDTSDRERFEESKSEL--QCLLTDESLASSIVFLVDTSDRERFEE-SKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       115 ~~~v~D~~g~~~~~~~~~~~--~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      ..+++.++|...-..+.+.+  ...+...-..+.++.|+|+.+...... ......++       ...-++++||+|+..
T Consensus        92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-------~~AD~IvlnK~Dl~~  164 (318)
T PRK11537         92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-------GYADRILLTKTDVAG  164 (318)
T ss_pred             CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-------HhCCEEEEeccccCC
Confidence            46778899976544444422  122333445689999999987432211 11111122       123478899999987


Q ss_pred             CCCHHHHHHHhhhcc
Q psy871          192 AASEEEIRQYFGLYG  206 (249)
Q Consensus       192 ~~~~~~~~~~~~~~~  206 (249)
                      +  .+++.+.++.++
T Consensus       165 ~--~~~~~~~l~~ln  177 (318)
T PRK11537        165 E--AEKLRERLARIN  177 (318)
T ss_pred             H--HHHHHHHHHHhC
Confidence            4  356666666554

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.52  E-value=1.7e-06  Score=70.63  Aligned_cols=160  Identities=15%  Similarity=0.117  Sum_probs=76.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcC----Ccccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD----RLAQP   94 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~----~~~~~   94 (249)
                      .++.+|+++|+.||||||++..|...-..                 ...++.++..|.-. .....++...    .++..
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~-----------------~GkkVglI~aDt~R-iaAvEQLk~yae~lgipv~  300 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHG-----------------KKKTVGFITTDHSR-IGTVQQLQDYVKTIGFEVI  300 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHH-----------------cCCcEEEEecCCcc-hHHHHHHHHHhhhcCCcEE
Confidence            44579999999999999999999742110                 11233333333221 1112222211    01000


Q ss_pred             -cCCcccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871           95 -VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD  172 (249)
Q Consensus        95 -~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~  172 (249)
                       ..............-...+..++++||+|...... ....+..++.. ...+.+++|+|++...  .++...+..+.  
T Consensus       301 v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~-~~PdevlLVLsATtk~--~d~~~i~~~F~--  375 (436)
T PRK11889        301 AVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQ-VEPDYICLTLSASMKS--KDMIEIITNFK--  375 (436)
T ss_pred             ecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhh-cCCCeEEEEECCccCh--HHHHHHHHHhc--
Confidence             00000111111111111245799999999654222 22333333332 3467788999986532  22222333331  


Q ss_pred             cCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871          173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGLYG  206 (249)
Q Consensus       173 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  206 (249)
                         .-..-=+++||.|-..  ..-.+.+......
T Consensus       376 ---~~~idglI~TKLDET~--k~G~iLni~~~~~  404 (436)
T PRK11889        376 ---DIHIDGIVFTKFDETA--SSGELLKIPAVSS  404 (436)
T ss_pred             ---CCCCCEEEEEcccCCC--CccHHHHHHHHHC
Confidence               1123457899999754  2344555555544

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.50  E-value=1.8e-06  Score=70.61  Aligned_cols=41  Identities=27%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             HhHHHHhhhcc-------cccc-eecceEEEeccCCcchHHHHHHHhcC
Q psy871            4 IWDWFTGVLGY-------LGLW-TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus         4 ~~~~~~~~~~~-------~~~~-~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .|+|....+..       ...+ .+...++++||+|+||||++..|...
T Consensus       112 ~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        112 AADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             HHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            56666655432       2222 34569999999999999999999753

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.49  E-value=1.9e-06  Score=72.11  Aligned_cols=68  Identities=19%  Similarity=0.309  Sum_probs=39.2

Q ss_pred             EEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecCCCCC
Q psy871          115 IVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKIDKHG  191 (249)
Q Consensus       115 ~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  191 (249)
                      .++++||+|...... ..+.+..+ .....+|.+++|+|++...   +.......+.     ...+ .-+|+||.|-..
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l-~~~~~pdevlLVvda~~gq---~av~~a~~F~-----~~l~i~gvIlTKlD~~a  246 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEI-KEAVKPDEVLLVIDATIGQ---QAKNQAKAFH-----EAVGIGGIIITKLDGTA  246 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHH-HHHhcccceeEEEeccccH---HHHHHHHHHH-----hcCCCCEEEEecccCCC
Confidence            689999999654332 22222222 2234688999999997742   2222333321     1233 457889999643

>KOG0467|consensus

Probab=98.48  E-value=4.8e-07  Score=78.10  Aligned_cols=130  Identities=20%  Similarity=0.190  Sum_probs=78.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ...++++++.+...|||||...|...+...                        ....+||-.++...-..+      ..
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvi------------------------s~rlagkirfld~redeq------~r   56 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVI------------------------SSRLAGKIRFLDTREDEQ------TR   56 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEe------------------------chhhccceeeccccchhh------hh
Confidence            345689999999999999999997654321                        112222222221110000      00


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                      +.+-....-.+...++.+.++|+|||-.|.+...      +....+|..++++|+...--.+... .+.+...    .+.
T Consensus        57 gitmkss~is~~~~~~~~nlidspghvdf~sevs------sas~l~d~alvlvdvvegv~~qt~~-vlrq~~~----~~~  125 (887)
T KOG0467|consen   57 GITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS------SASRLSDGALVLVDVVEGVCSQTYA-VLRQAWI----EGL  125 (887)
T ss_pred             ceeeeccccccccCceEEEEecCCCccchhhhhh------hhhhhcCCcEEEEeeccccchhHHH-HHHHHHH----ccC
Confidence            0000000011234577899999999999988776      5567899999999998743332221 2333222    467


Q ss_pred             cEEEEEecCCC
Q psy871          179 PVLILGNKIDK  189 (249)
Q Consensus       179 p~ivv~nK~Dl  189 (249)
                      .+++|+||+|.
T Consensus       126 ~~~lvinkidr  136 (887)
T KOG0467|consen  126 KPILVINKIDR  136 (887)
T ss_pred             ceEEEEehhhh
Confidence            78899999994

>KOG2655|consensus

Probab=98.48  E-value=1.5e-06  Score=69.88  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA   47 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~   47 (249)
                      .+.+.++|.+|.|||||+|.|....+.
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~   47 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLS   47 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhcc
Confidence            478999999999999999999876444

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.47  E-value=3.7e-06  Score=61.98  Aligned_cols=71  Identities=17%  Similarity=0.205  Sum_probs=40.8

Q ss_pred             ceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          113 DAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      +..++++|++|...... ....+..+. .....+.+++|+|+.......   .....+.+.   .+ ..-++.||.|...
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~-~~~~~~~~~lVv~~~~~~~~~---~~~~~~~~~---~~-~~~viltk~D~~~  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIK-RVVKPDEVLLVVDAMTGQDAV---NQAKAFNEA---LG-ITGVILTKLDGDA  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHH-hhcCCCeEEEEEECCCChHHH---HHHHHHHhh---CC-CCEEEEECCcCCC
Confidence            44578899999653322 222222222 234589999999997543222   234444322   22 3567789999765

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0705|consensus

Probab=98.44  E-value=2.9e-07  Score=76.72  Aligned_cols=160  Identities=14%  Similarity=0.193  Sum_probs=100.7

Q ss_pred             cccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      |+-.-++.|++|||..++|||+|+.+.+.+.+. ...|.-+.....+                                 
T Consensus        24 lsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~---------------------------------   70 (749)
T KOG0705|consen   24 LSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEV---------------------------------   70 (749)
T ss_pred             eecccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeE---------------------------------
Confidence            344467889999999999999999997654433 1112111111111                                 


Q ss_pred             ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                                    .....+..+.+.|..+....           .+-..+|++|+||...+..+|+.......++-...
T Consensus        71 --------------vv~gqs~lLlirdeg~~~~a-----------Qft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r  125 (749)
T KOG0705|consen   71 --------------VVDGQSHLLLIRDEGGHPDA-----------QFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYR  125 (749)
T ss_pred             --------------EeeccceEeeeecccCCchh-----------hhhhhccceEEEEEeccccCHHHHHHHHhhccccc
Confidence                          12334455677777773322           12246899999999999999988765555554443


Q ss_pred             CCCCCcEEEEEecCCCCC----CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHG----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ....+|.++++++.-...    .....+....+...                ....+|+.+|.+|.+++..|+.+...+
T Consensus       126 ~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~----------------krcsy~et~atyGlnv~rvf~~~~~k~  188 (749)
T KOG0705|consen  126 NISDLPLILVGTQDHISAKRPRVITDDRARQLSAQM----------------KRCSYYETCATYGLNVERVFQEVAQKI  188 (749)
T ss_pred             ccccchHHhhcCcchhhcccccccchHHHHHHHHhc----------------CccceeecchhhhhhHHHHHHHHHHHH
Confidence            446788898888653311    11122222222222                227899999999999999999887653

>KOG3905|consensus

Probab=98.44  E-value=8.6e-06  Score=64.08  Aligned_cols=166  Identities=17%  Similarity=0.125  Sum_probs=92.6

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccc--eEEEEEeCCCchhhhhhHHHHhhhhcccc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVD--AIVFLVDTSDRERFEESKSELQCLLTDES  142 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~D~~g~~~~~~~~~~~~~~~~~~~  142 (249)
                      ....+.+.|.+..||++++.++.+.+.  ..++.+..+.+...+-+..|  ..+-+|-.-|.- +.  ...++..+....
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e~--~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~-~h--~~LLk~al~ats  125 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSET--VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDL-YH--KGLLKFALPATS  125 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhcccc--cCCCCCcceEEEecccccchhhhhcceEEecCch-hh--hhHHhhcccccC
Confidence            456788899999999999999987662  33344444433333222222  224456555421 11  112233344444


Q ss_pred             ccceE-EEEEECCChhhhHh-hHHHH----------------------------HHHHh-----------c---------
Q psy871          143 LASSI-VFLVDTSDRERFEE-SKSEL----------------------------QCLLT-----------D---------  172 (249)
Q Consensus       143 ~~d~i-i~v~d~~~~~~~~~-~~~~~----------------------------~~~~~-----------~---------  172 (249)
                      .++.+ |++.|.+++..+.+ +..|.                            +++..           .         
T Consensus       126 ~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~d  205 (473)
T KOG3905|consen  126 LAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSAD  205 (473)
T ss_pred             ccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccc
Confidence            55554 67889998733322 22211                            11100           0         


Q ss_pred             ------------cCCCCCcEEEEEecCCCCC----CC-CH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeee
Q psy871          173 ------------ESLASCPVLILGNKIDKHG----AA-SE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSV  231 (249)
Q Consensus       173 ------------~~~~~~p~ivv~nK~Dl~~----~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  231 (249)
                                  --+.++|++||++|||.+.    +. -+    +-++..++.+-.+             .....+.+|+
T Consensus       206 e~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr-------------~GaaLiyTSv  272 (473)
T KOG3905|consen  206 EHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLR-------------YGAALIYTSV  272 (473)
T ss_pred             cccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHH-------------cCceeEEeec
Confidence                        0013589999999999854    11 11    1122222222110             1267899999


Q ss_pred             ccccchHHHHHHHhhhc
Q psy871          232 LMRQGYGDGFRWLANYI  248 (249)
Q Consensus       232 ~~g~gv~~l~~~l~~~i  248 (249)
                      |...|++-+..+|..++
T Consensus       273 KE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  273 KETKNIDLLYKYIVHRS  289 (473)
T ss_pred             ccccchHHHHHHHHHHh
Confidence            99999999999998753

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.44  E-value=3.7e-07  Score=64.97  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=21.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .+++++|.+|+|||||+|+|++..
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~  107 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKK  107 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            389999999999999999997654

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.43  E-value=7.1e-06  Score=68.83  Aligned_cols=157  Identities=18%  Similarity=0.194  Sum_probs=76.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCC-CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhc-CCccc-cc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKD-DRLAQ-PV   95 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~-~~~~~-~~   95 (249)
                      ...++++|+.|+||||++-.|..... ..                ...++.++..+.-.....  +..+.. ...+. ..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~----------------~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~  284 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLY----------------GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVV  284 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhc----------------CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEcc
Confidence            34899999999999999998864321 00                123444444433211111  111110 00110 00


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                      ..........   -...+..++++||+|...... ....+..++.......-..+|++++...  ..+...+..+     
T Consensus       285 ~~~~~l~~~l---~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f-----  354 (424)
T PRK05703        285 YDPKELAKAL---EQLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHF-----  354 (424)
T ss_pred             CCHHhHHHHH---HHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHh-----
Confidence            0111111111   112346799999999754322 2233344444222345667888886532  2222233333     


Q ss_pred             CCCCc-EEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871          175 LASCP-VLILGNKIDKHGAASEEEIRQYFGLYG  206 (249)
Q Consensus       175 ~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~  206 (249)
                       ...+ --+++||.|-...  ...+.+.+...+
T Consensus       355 -~~~~~~~vI~TKlDet~~--~G~i~~~~~~~~  384 (424)
T PRK05703        355 -SRLPLDGLIFTKLDETSS--LGSILSLLIESG  384 (424)
T ss_pred             -CCCCCCEEEEeccccccc--ccHHHHHHHHHC
Confidence             2222 3688999997442  335556555554

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.42  E-value=4.3e-07  Score=72.47  Aligned_cols=28  Identities=25%  Similarity=0.595  Sum_probs=22.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      .+..+++++|.||+|||||+|+|++...
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~  146 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKI  146 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCc
Confidence            4556899999999999999999976544

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.41  E-value=4.8e-07  Score=71.81  Aligned_cols=27  Identities=26%  Similarity=0.566  Sum_probs=23.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .+..+++++|.||+|||||+|+|.+..
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~  142 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKK  142 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999997654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01855 YqeH YqeH

Probab=98.41  E-value=6.8e-07  Score=67.00  Aligned_cols=26  Identities=35%  Similarity=0.608  Sum_probs=21.3

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +...++++|.+|+|||||+|+|.+..
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            44689999999999999999997643

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.40  E-value=1.6e-07  Score=77.13  Aligned_cols=135  Identities=11%  Similarity=0.045  Sum_probs=70.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      ..+++++|.+|||||||+|+|+........        ..           ...+                     .++.
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~--------~~-----------~~s~---------------------~pgt  193 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKD--------VI-----------TTSP---------------------FPGT  193 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcc--------ee-----------eecC---------------------CCCe
Confidence            368999999999999999999864321000        00           0001                     1112


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHH----hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSEL----QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~----~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      |.......+   +..+.++||||..........+    ...+...+......++++..+.-.+..+. .+ .++..   .
T Consensus       194 T~~~~~~~~---~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~-~~-d~~~~---~  265 (360)
T TIGR03597       194 TLDLIEIPL---DDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLA-RF-DYLKG---E  265 (360)
T ss_pred             EeeEEEEEe---CCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEE-EE-EEecC---C
Confidence            222211111   2236799999965443322221    11233345567777888776643333221 01 11111   3


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhh
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFG  203 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~  203 (249)
                      ...+.+.++|.+.......+...+.++
T Consensus       266 ~~~~~~~~~~~~~~h~t~~~~a~~~~~  292 (360)
T TIGR03597       266 KTSFTFYVSNELNIHRTKLENADELYN  292 (360)
T ss_pred             ceEEEEEccCCceeEeechhhhHHHHH
Confidence            556778888888766444454544444

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.40  E-value=1.1e-05  Score=66.06  Aligned_cols=26  Identities=15%  Similarity=0.167  Sum_probs=22.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      .+.|+||||+.+|||||+.|+...-+
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~V   42 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLV   42 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhc
Confidence            56899999999999999999986543

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK13796 GTPase YqeH; Provisional

Probab=98.37  E-value=2.6e-06  Score=70.20  Aligned_cols=94  Identities=20%  Similarity=0.316  Sum_probs=59.4

Q ss_pred             hhccccccc-eEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccC
Q psy871          137 LLTDESLAS-SIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVAT  214 (249)
Q Consensus       137 ~~~~~~~~d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~  214 (249)
                      .+..+...+ .+++|+|+.+..  ......+.++.     .+.|+++|+||+|+... ...+++.++.+.....      
T Consensus        62 ~l~~i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~------  128 (365)
T PRK13796         62 LLNGIGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKE------  128 (365)
T ss_pred             HHHhhcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHh------
Confidence            344555555 888999998743  22222333332     36899999999999752 3344555444432200      


Q ss_pred             CCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          215 PRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       215 ~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                          .......++.+||+++.|++++++.+.+.
T Consensus       129 ----~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        129 ----LGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             ----cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence                11112368999999999999999998654

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.37  E-value=1.3e-07  Score=67.84  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=22.5

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +...++++|++|||||||+|+|....
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            35789999999999999999997653

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=98.36  E-value=5.8e-06  Score=67.42  Aligned_cols=86  Identities=20%  Similarity=0.173  Sum_probs=49.7

Q ss_pred             eEEEEEeCCCchhhhhhHHHHh-hhhccccccceEEEEEECCChhh--h--------------------HhhHHHHHHHH
Q psy871          114 AIVFLVDTSDRERFEESKSELQ-CLLTDESLASSIVFLVDTSDRER--F--------------------EESKSELQCLL  170 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~-~~~~~~~~~d~ii~v~d~~~~~~--~--------------------~~~~~~~~~~~  170 (249)
                      ...+++.++|......+...+. ..+...-..+.++.|+|+.+-..  +                    ..+...+..-+
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            4577899999766555555331 12233346789999999975321  0                    00011111111


Q ss_pred             hccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhc
Q psy871          171 TDESLASCPVLILGNKIDKHGAASEEEIRQYFGLY  205 (249)
Q Consensus       171 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  205 (249)
                            ...-++++||+|+.++...+++.+.++.+
T Consensus       173 ------~~AD~IvlnK~Dl~~~~~l~~~~~~l~~~  201 (341)
T TIGR02475       173 ------ACADLVILNKADLLDAAGLARVRAEIAAE  201 (341)
T ss_pred             ------HhCCEEEEeccccCCHHHHHHHHHHHHHh
Confidence                  23458899999998765555666666553

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.34  E-value=1.5e-05  Score=66.36  Aligned_cols=41  Identities=22%  Similarity=0.273  Sum_probs=29.1

Q ss_pred             HhHHHHhhhc----ccc---cceecceEEEeccCCcchHHHHHHHhcC
Q psy871            4 IWDWFTGVLG----YLG---LWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus         4 ~~~~~~~~~~----~~~---~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .|+|+...+.    .++   .-.+..+++++|+.|+||||++..|.+.
T Consensus       167 ~~~~~~~~l~~~l~~~~~~~~~~~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        167 SLKKTISLLTLNLRTIGGDEIIEQGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             HHHHHHHHHHHHHHhcCCccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5666665553    122   1234569999999999999999998763

>PRK01889 GTPase RsgA; Reviewed

Probab=98.34  E-value=4.4e-06  Score=68.62  Aligned_cols=84  Identities=13%  Similarity=0.099  Sum_probs=56.5

Q ss_pred             ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871          141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS  220 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (249)
                      ....|.+++|+++..+-....++..+... .   ..++|.++|+||+||.+.  .++..+.+....              
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~---~~~i~piIVLNK~DL~~~--~~~~~~~~~~~~--------------  169 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALA-W---ESGAEPVIVLTKADLCED--AEEKIAEVEALA--------------  169 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHH-H---HcCCCEEEEEEChhcCCC--HHHHHHHHHHhC--------------
Confidence            46789999999997543333333333332 2   267888999999999764  222222222222              


Q ss_pred             CCceeEEEeeeccccchHHHHHHHh
Q psy871          221 GRPIELFMCSVLMRQGYGDGFRWLA  245 (249)
Q Consensus       221 ~~~~~~~~~Sa~~g~gv~~l~~~l~  245 (249)
                       ...+++.+|++++.|++++..+|.
T Consensus       170 -~g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        170 -PGVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             -CCCcEEEEECCCCccHHHHHHHhh
Confidence             236899999999999999999885

>cd01859 MJ1464 MJ1464

Probab=98.34  E-value=1.1e-06  Score=63.67  Aligned_cols=25  Identities=36%  Similarity=0.643  Sum_probs=16.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...+++++|.+|+|||||+|+|.+.
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~  124 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGR  124 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3456677777777777777777643

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.31  E-value=8.6e-07  Score=71.68  Aligned_cols=31  Identities=29%  Similarity=0.508  Sum_probs=25.8

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCC
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      |...+..+++|+|.||+|||||+|+|.+...
T Consensus       127 ~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~  157 (322)
T COG1161         127 GLLKRKIRVGVVGYPNVGKSTLINRLLGKKV  157 (322)
T ss_pred             CCCccceEEEEEcCCCCcHHHHHHHHhcccc
Confidence            3345567899999999999999999987654

>KOG0447|consensus

Probab=98.31  E-value=1.8e-05  Score=66.41  Aligned_cols=181  Identities=17%  Similarity=0.106  Sum_probs=95.3

Q ss_pred             ccccceecceEEEeccCCcchHHHHHHHhcCCCC----CCCCCCCcccceeeeeeeeceEEE-EcCCCC-----chhHHH
Q psy871           14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPILGYLGLWTKSGKLLF-LGLDNA-----GKTTLL   83 (249)
Q Consensus        14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~-~g~~~~-----Gkssl~   83 (249)
                      -++....-++|+|||+..+||||.+..+....+-    ....|..+...++    ..+-..+ ...+..     -|.+=+
T Consensus       301 sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTL----sEGPyHVAqFrDSsREfDLTKE~DL  376 (980)
T KOG0447|consen  301 SYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTL----SEGPHHVALFKDSSREFDLTKEEDL  376 (980)
T ss_pred             cccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEe----ccCcchhhhhccccccccccchhHH
Confidence            3455567789999999999999999999977643    2223333333333    1111111 111111     111112


Q ss_pred             HHHhcCC----cccccCCcccceeceeccccccce-EEEEEeCCCchh----------hhhhHHHHhhhhccccccceEE
Q psy871           84 HMLKDDR----LAQPVPTLHPTRRVWKDYFPAVDA-IVFLVDTSDRER----------FEESKSELQCLLTDESLASSIV  148 (249)
Q Consensus        84 ~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~D~~g~~~----------~~~~~~~~~~~~~~~~~~d~ii  148 (249)
                      .++...-    ......|.............+... .+.++|.||...          -..+..+.+   .++...++||
T Consensus       377 q~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msK---ayM~NPNAII  453 (980)
T KOG0447|consen  377 AALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISK---AYMQNPNAII  453 (980)
T ss_pred             HHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHH---HHhcCCCeEE
Confidence            2222110    001111222222222222333222 377899999432          122222222   5567899999


Q ss_pred             EEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC--CCHHHHHHHhhh
Q psy871          149 FLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA--ASEEEIRQYFGL  204 (249)
Q Consensus       149 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~  204 (249)
                      +|+-..+.+.-..   ....+.......+...|+|++|.|+.+.  .+++.+...+..
T Consensus       454 LCIQDGSVDAERS---nVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  454 LCIQDGSVDAERS---IVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             EEeccCCcchhhh---hHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence            9985555433322   3334444445578999999999999763  456777776653

>PRK10867 signal recognition particle protein; Provisional

Probab=98.31  E-value=8.1e-06  Score=68.30  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=38.6

Q ss_pred             ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      +..++++||+|.-... .....+..+.. ....+.+++|+|+....   +.......+...   . ...-+|+||.|-.
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~-~v~p~evllVlda~~gq---~av~~a~~F~~~---~-~i~giIlTKlD~~  253 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKA-AVNPDEILLVVDAMTGQ---DAVNTAKAFNEA---L-GLTGVILTKLDGD  253 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHH-hhCCCeEEEEEecccHH---HHHHHHHHHHhh---C-CCCEEEEeCccCc
Confidence            4569999999964332 22232332322 23567789999987532   222233333221   1 1235678999954

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.30  E-value=2.2e-06  Score=70.74  Aligned_cols=159  Identities=14%  Similarity=0.154  Sum_probs=76.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchh--HHHHHHhcC-CcccccC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKT--TLLHMLKDD-RLAQPVP   96 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gks--sl~~~l~~~-~~~~~~~   96 (249)
                      +...++++|++||||||++..|.......                ...++.+...|.-...  ..+..+... ..+..  
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~----------------~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~--  283 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLH----------------MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY--  283 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHh----------------cCCeEEEecccchhhhHHHHHHHHHHhcCCCee--
Confidence            34579999999999999999997422110                1123333333331111  112222111 11100  


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchh-hhhhHHHHhhhhcccc--ccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKSELQCLLTDES--LASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                      ...... .....+...+..++++||+|... -......+..++....  ..+-.++|+|++....  ++......+ .  
T Consensus       284 ~~~~~~-~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~--~~~~~~~~f-~--  357 (432)
T PRK12724        284 PVKDIK-KFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH--HTLTVLKAY-E--  357 (432)
T ss_pred             ehHHHH-HHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH--HHHHHHHHh-c--
Confidence            000001 11112222355689999999652 2333444444444432  2456789999987531  111122222 1  


Q ss_pred             CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871          174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYG  206 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  206 (249)
                        .--+-=+|+||.|-..  ..-.+.+......
T Consensus       358 --~~~~~glIlTKLDEt~--~~G~il~i~~~~~  386 (432)
T PRK12724        358 --SLNYRRILLTKLDEAD--FLGSFLELADTYS  386 (432)
T ss_pred             --CCCCCEEEEEcccCCC--CccHHHHHHHHHC
Confidence              1223457899999643  2333444444443

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.30  E-value=4.1e-06  Score=59.96  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=36.8

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID  188 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  188 (249)
                      .+..++++||+|.....   .      ..+..+|-+++|...+--+...-++.   .+      ....-++++||+|
T Consensus        90 ~~~D~iiIDtaG~~~~~---~------~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~------~~~~~~~~~~k~~  148 (148)
T cd03114          90 AGFDVIIVETVGVGQSE---V------DIASMADTTVVVMAPGAGDDIQAIKA---GI------MEIADIVVVNKAD  148 (148)
T ss_pred             cCCCEEEEECCccChhh---h------hHHHhCCEEEEEECCCchhHHHHhhh---hH------hhhcCEEEEeCCC
Confidence            35679999999854221   1      23467899999988874443332211   11      2345588899998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.29  E-value=1.1e-06  Score=71.67  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++++|++|+|||||+|+|...
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~  195 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPD  195 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCc
Confidence            4899999999999999999754

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.29  E-value=2.3e-05  Score=66.63  Aligned_cols=83  Identities=13%  Similarity=0.165  Sum_probs=44.8

Q ss_pred             ceEEEEEeCCCchhhhhh-HHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          113 DAIVFLVDTSDRERFEES-KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      +..++++||+|....... ...+.. +... .....++|++.+.  +..++...+..+..     ..+.-+|+||.|...
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~-L~aa-~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNW-LRAA-RQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHH-HHHh-hcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence            456999999996533222 111221 1211 1235677777765  23333334444421     246779999999744


Q ss_pred             CCCHHHHHHHhhhcc
Q psy871          192 AASEEEIRQYFGLYG  206 (249)
Q Consensus       192 ~~~~~~~~~~~~~~~  206 (249)
                        ..-.+.+.+....
T Consensus       499 --~lG~aLsv~~~~~  511 (559)
T PRK12727        499 --RFGSALSVVVDHQ  511 (559)
T ss_pred             --chhHHHHHHHHhC
Confidence              3445555555444

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.28  E-value=3.3e-06  Score=79.42  Aligned_cols=76  Identities=21%  Similarity=0.147  Sum_probs=46.4

Q ss_pred             EEEEEeCCCchhhhh-----hHHHHhhhhccc------cccceEEEEEECCChhh-----h----HhhHHHHHHHHhccC
Q psy871          115 IVFLVDTSDRERFEE-----SKSELQCLLTDE------SLASSIVFLVDTSDRER-----F----EESKSELQCLLTDES  174 (249)
Q Consensus       115 ~~~v~D~~g~~~~~~-----~~~~~~~~~~~~------~~~d~ii~v~d~~~~~~-----~----~~~~~~~~~~~~~~~  174 (249)
                      ..+++||+|......     ....+..++.-+      .-.+++|+++|+.+...     .    ..++..+.++.... 
T Consensus       162 ~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-  240 (1169)
T TIGR03348       162 EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-  240 (1169)
T ss_pred             CEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-
Confidence            355899999443221     122344444332      34799999999976321     1    23444555554332 


Q ss_pred             CCCCcEEEEEecCCCCC
Q psy871          175 LASCPVLILGNKIDKHG  191 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~  191 (249)
                      ....|+.+++||||+..
T Consensus       241 g~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       241 GARFPVYLVLTKADLLA  257 (1169)
T ss_pred             CCCCCEEEEEecchhhc
Confidence            25899999999999875

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.28  E-value=1.6e-06  Score=62.75  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=21.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .+..+++++|.||+|||||+|+|++..
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~  124 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKL  124 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccc
Confidence            356788899999999999999987643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.28  E-value=8.1e-06  Score=66.52  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=21.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+...++++|+.|+||||++..|..
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3466889999999999999999974

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.28  E-value=6.2e-06  Score=61.87  Aligned_cols=85  Identities=14%  Similarity=0.065  Sum_probs=48.5

Q ss_pred             cceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          112 VDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      .+..++++||+|..... ...+.+..+.... ..+-+++|++++....-.  . ........   . .+-=+++||.|-.
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~--~-~~~~~~~~---~-~~~~lIlTKlDet  153 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDL--E-QALAFYEA---F-GIDGLILTKLDET  153 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHH--H-HHHHHHHH---S-STCEEEEESTTSS
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccChHHH--H-HHHHHhhc---c-cCceEEEEeecCC
Confidence            34569999999965433 2334455444444 578889999998854322  2 22222221   1 2335679999975


Q ss_pred             CCCCHHHHHHHhhhcc
Q psy871          191 GAASEEEIRQYFGLYG  206 (249)
Q Consensus       191 ~~~~~~~~~~~~~~~~  206 (249)
                      ..  .-.+.+.+....
T Consensus       154 ~~--~G~~l~~~~~~~  167 (196)
T PF00448_consen  154 AR--LGALLSLAYESG  167 (196)
T ss_dssp             ST--THHHHHHHHHHT
T ss_pred             CC--cccceeHHHHhC
Confidence            43  345555555554

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01856 YlqF YlqF

Probab=98.27  E-value=1.4e-06  Score=64.06  Aligned_cols=29  Identities=24%  Similarity=0.560  Sum_probs=23.4

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      ....++++++|.+|+|||||+|+|.+...
T Consensus       112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~  140 (171)
T cd01856         112 LPRGIRAMVVGIPNVGKSTLINRLRGKKV  140 (171)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence            34456899999999999999999976554

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.26  E-value=1.2e-06  Score=71.51  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.3

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++++|+||||||||+|+|.+.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~  228 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPE  228 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccc
Confidence            4789999999999999999754

>KOG0464|consensus

Probab=98.26  E-value=6.6e-07  Score=72.41  Aligned_cols=140  Identities=19%  Similarity=0.090  Sum_probs=89.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +-++|+++.+..+||||...|++.                     ..+-+...|....|.+.--..-...       ..+
T Consensus        36 kirnigiiahidagktttterily---------------------~ag~~~s~g~vddgdtvtdfla~er-------erg   87 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILY---------------------LAGAIHSAGDVDDGDTVTDFLAIER-------ERG   87 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHH---------------------HhhhhhcccccCCCchHHHHHHHHH-------hcC
Confidence            345899999999999999999863                     2333344454445543222111111       111


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                      .+.......++-....+.++||||+-.|.--.+      +.++..|.++.|+|++..-..+.+.-|     +.....++|
T Consensus        88 itiqsaav~fdwkg~rinlidtpghvdf~leve------rclrvldgavav~dasagve~qtltvw-----rqadk~~ip  156 (753)
T KOG0464|consen   88 ITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVE------RCLRVLDGAVAVFDASAGVEAQTLTVW-----RQADKFKIP  156 (753)
T ss_pred             ceeeeeeeecccccceEeeecCCCcceEEEEHH------HHHHHhcCeEEEEeccCCcccceeeee-----hhccccCCc
Confidence            122222233444566789999999998877676      666778999999999885444443212     233347899


Q ss_pred             EEEEEecCCCCCCCCHHHH
Q psy871          180 VLILGNKIDKHGAASEEEI  198 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~  198 (249)
                      ....+||+|.........+
T Consensus       157 ~~~finkmdk~~anfe~av  175 (753)
T KOG0464|consen  157 AHCFINKMDKLAANFENAV  175 (753)
T ss_pred             hhhhhhhhhhhhhhhhhHH
Confidence            9999999998764444333

>KOG0465|consensus

Probab=98.23  E-value=3e-06  Score=71.66  Aligned_cols=149  Identities=18%  Similarity=0.187  Sum_probs=86.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+-++|.+.-+-.|||||+.++.+.                     ..+...-.+..-.| .+.+..+-...      ..
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Ly---------------------y~G~~~~i~ev~~~-~a~md~m~~er------~r   88 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLY---------------------YTGRIKHIGEVRGG-GATMDSMELER------QR   88 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeee---------------------ecceeeeccccccC-ceeeehHHHHH------hc
Confidence            3567899999999999999999753                     11222222222222 11111111000      00


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                      +.+......++...+..+.++|||||..|.--.+      +.+...|..++|+|+...-.-+... .++++.+    ++.
T Consensus        89 gITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVe------RALrVlDGaVlvl~aV~GVqsQt~t-V~rQ~~r----y~v  157 (721)
T KOG0465|consen   89 GITIQSAATYFTWRDYRINIIDTPGHVDFTFEVE------RALRVLDGAVLVLDAVAGVESQTET-VWRQMKR----YNV  157 (721)
T ss_pred             CceeeeceeeeeeccceeEEecCCCceeEEEEeh------hhhhhccCeEEEEEcccceehhhHH-HHHHHHh----cCC
Confidence            1111111122222367899999999998876666      6667789999999887642222221 3333322    789


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFGLYG  206 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  206 (249)
                      |.+..+||+|......-..+.+....+.
T Consensus       158 P~i~FiNKmDRmGa~~~~~l~~i~~kl~  185 (721)
T KOG0465|consen  158 PRICFINKMDRMGASPFRTLNQIRTKLN  185 (721)
T ss_pred             CeEEEEehhhhcCCChHHHHHHHHhhcC
Confidence            9999999999987655555555544443

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.22  E-value=3.3e-05  Score=65.37  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=21.3

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...++++|+.|+||||++..|..
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHH
Confidence            346899999999999999999975

>KOG3886|consensus

Probab=98.21  E-value=8.8e-06  Score=60.96  Aligned_cols=129  Identities=19%  Similarity=0.208  Sum_probs=81.8

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceecccccc-ceEEEEEeCCCchhhhhhHHHHhhhhccccc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAV-DAIVFLVDTSDRERFEESKSELQCLLTDESL  143 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~  143 (249)
                      ...++.+.|..++||+++-..++.+...-+....+.+.+..+.+.+.. +..+.+||..|++.+-+..-.. +--.....
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~-q~d~iF~n   81 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSS-QEDNIFRN   81 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhh-cchhhhee
Confidence            346888999999999998766664443333334444444444444433 3568899999998664433211 11133567


Q ss_pred             cceEEEEEECCChhhh---HhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHH
Q psy871          144 ASSIVFLVDTSDRERF---EESKSELQCLLTDESLASCPVLILGNKIDKHGAASEE  196 (249)
Q Consensus       144 ~d~ii~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  196 (249)
                      .+++++|||++..+--   ...+.-++.+++.  .+...+++...|.|++....++
T Consensus        82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~  135 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARE  135 (295)
T ss_pred             heeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHH
Confidence            8999999999886433   3333344445443  2567889999999998743333

>TIGR00959 ffh signal recognition particle protein

Probab=98.20  E-value=1.9e-05  Score=66.08  Aligned_cols=71  Identities=18%  Similarity=0.185  Sum_probs=40.0

Q ss_pred             cceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          112 VDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      .+..++++||+|...... ....+..+.. .-..+.+++|+|+....   +.......+...   - ...=+|.||.|-.
T Consensus       181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~-~~~p~e~lLVvda~tgq---~~~~~a~~f~~~---v-~i~giIlTKlD~~  252 (428)
T TIGR00959       181 NGFDVVIVDTAGRLQIDEELMEELAAIKE-ILNPDEILLVVDAMTGQ---DAVNTAKTFNER---L-GLTGVVLTKLDGD  252 (428)
T ss_pred             cCCCEEEEeCCCccccCHHHHHHHHHHHH-hhCCceEEEEEeccchH---HHHHHHHHHHhh---C-CCCEEEEeCccCc
Confidence            345689999999643322 2333333333 33578889999987542   222233333221   1 2345779999953

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.20  E-value=4.6e-05  Score=59.93  Aligned_cols=84  Identities=13%  Similarity=0.084  Sum_probs=46.4

Q ss_pred             ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      +..++++||+|..... ...+.+..++.. ...+-+++|+|++...  .++...+..+.     .-.+-=+++||.|-..
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~-~~~~~~~LVl~a~~~~--~d~~~~~~~f~-----~~~~~~~I~TKlDet~  225 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQ-VEPDYICLTLSASMKS--KDMIEIITNFK-----DIHIDGIVFTKFDETA  225 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhh-hCCCeEEEEEcCccCH--HHHHHHHHHhC-----CCCCCEEEEEeecCCC
Confidence            4579999999965332 223334444432 3456789999987521  12222333331     1234467899999755


Q ss_pred             CCCHHHHHHHhhhcc
Q psy871          192 AASEEEIRQYFGLYG  206 (249)
Q Consensus       192 ~~~~~~~~~~~~~~~  206 (249)
                      .  .-.+.+......
T Consensus       226 ~--~G~~l~~~~~~~  238 (270)
T PRK06731        226 S--SGELLKIPAVSS  238 (270)
T ss_pred             C--ccHHHHHHHHHC
Confidence            2  334444444444

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.19  E-value=3.5e-06  Score=65.57  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=20.8

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...++++|++|+|||||+|+|.+.
T Consensus       120 ~~~~~~~G~sgvGKStLiN~L~~~  143 (245)
T TIGR00157       120 NRISVFAGQSGVGKSSLINALDPS  143 (245)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhh
Confidence            357899999999999999999754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.17  E-value=1.4e-05  Score=65.35  Aligned_cols=156  Identities=19%  Similarity=0.250  Sum_probs=78.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHH---hcCCccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHML---KDDRLAQ   93 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l---~~~~~~~   93 (249)
                      .+...|++|||.||||||-+--|.....-           ..    ...++.++--|+--.-..  +..+   .+-++. 
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~-----------~~----~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-  264 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVM-----------LK----KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-  264 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHHh-----------hc----cCcceEEEEeccchhhHHHHHHHHHHHhCCceE-
Confidence            45789999999999999999888654330           00    233334433332211111  1111   111111 


Q ss_pred             ccCCcccceeceeccccccceEEEEEeCCCchhhhhhH-HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871           94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK-SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD  172 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~  172 (249)
                         -...............++.++++||.|........ ..+..+...- ...-+.+|++++..  ..++.+.+..+   
T Consensus       265 ---vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K--~~dlkei~~~f---  335 (407)
T COG1419         265 ---VVYSPKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATTK--YEDLKEIIKQF---  335 (407)
T ss_pred             ---EecCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCcc--hHHHHHHHHHh---
Confidence               11111111111222345579999999976544332 3444454443 44555678888874  23333344443   


Q ss_pred             cCCCCCcE-EEEEecCCCCCCCCHHHHHHHhhh
Q psy871          173 ESLASCPV-LILGNKIDKHGAASEEEIRQYFGL  204 (249)
Q Consensus       173 ~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~~~  204 (249)
                         ...|+ -+++||.|-..  ..-++-+.+..
T Consensus       336 ---~~~~i~~~I~TKlDET~--s~G~~~s~~~e  363 (407)
T COG1419         336 ---SLFPIDGLIFTKLDETT--SLGNLFSLMYE  363 (407)
T ss_pred             ---ccCCcceeEEEcccccC--chhHHHHHHHH
Confidence               33333 36799999654  34444444443

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.15  E-value=3.7e-05  Score=68.23  Aligned_cols=160  Identities=15%  Similarity=0.104  Sum_probs=77.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCc--hhHHHHHHhcCC-ccc-ccC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAG--KTTLLHMLKDDR-LAQ-PVP   96 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~G--kssl~~~l~~~~-~~~-~~~   96 (249)
                      ...++++|+.||||||++..|.......    .           ...++.++..|.-.  -..-+..+.... .+. ...
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~----~-----------G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~  249 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAR----E-----------GADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK  249 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHH----c-----------CCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC
Confidence            4589999999999999999997632110    0           11244455444332  122222222111 100 000


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCCh-hhhHhhHHHHHHHHhccC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDR-ERFEESKSELQCLLTDES  174 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~  174 (249)
                      ..........   ...+..++++||+|..... ...+.+..+.. ....+-.++|+|++.. +.+.+   ....+.... 
T Consensus       250 ~~~~l~~al~---~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~-~~~p~e~~LVLsAt~~~~~l~~---i~~~f~~~~-  321 (767)
T PRK14723        250 DAADLRFALA---ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCG-VGRPVRRLLLLNAASHGDTLNE---VVHAYRHGA-  321 (767)
T ss_pred             CHHHHHHHHH---HhcCCCEEEEeCCCCCccCHHHHHHHHHHhc-cCCCCeEEEEECCCCcHHHHHH---HHHHHhhcc-
Confidence            1111111111   1234469999999954322 22332322222 3456678899999863 32332   223331100 


Q ss_pred             CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871          175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYG  206 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  206 (249)
                       .--+-=+|+||.|-..  ..-.+.+......
T Consensus       322 -~~~i~glIlTKLDEt~--~~G~iL~i~~~~~  350 (767)
T PRK14723        322 -GEDVDGCIITKLDEAT--HLGPALDTVIRHR  350 (767)
T ss_pred             -cCCCCEEEEeccCCCC--CccHHHHHHHHHC
Confidence             0023457799999654  2334444444444

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=1.8e-05  Score=66.81  Aligned_cols=110  Identities=17%  Similarity=0.225  Sum_probs=65.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+++-++|+||||.|||||++.|....   ...|+....+.+                                      
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~---tk~ti~~i~GPi--------------------------------------  105 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRF---TKQTIDEIRGPI--------------------------------------  105 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHH---HHhhhhccCCce--------------------------------------
Confidence            455677799999999999999985321   111222222222                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                              ....+....+.+..+|+  ...       +++...+.+|.+++++|.+-.-.-..+  .+..++..   ++.
T Consensus       106 --------TvvsgK~RRiTflEcp~--Dl~-------~miDvaKIaDLVlLlIdgnfGfEMETm--EFLnil~~---HGm  163 (1077)
T COG5192         106 --------TVVSGKTRRITFLECPS--DLH-------QMIDVAKIADLVLLLIDGNFGFEMETM--EFLNILIS---HGM  163 (1077)
T ss_pred             --------EEeecceeEEEEEeChH--HHH-------HHHhHHHhhheeEEEeccccCceehHH--HHHHHHhh---cCC
Confidence                    11223344677777773  222       233455689999999998764222333  23333333   566


Q ss_pred             c-EEEEEecCCCCC
Q psy871          179 P-VLILGNKIDKHG  191 (249)
Q Consensus       179 p-~ivv~nK~Dl~~  191 (249)
                      | ++-|++..|+..
T Consensus       164 PrvlgV~ThlDlfk  177 (1077)
T COG5192         164 PRVLGVVTHLDLFK  177 (1077)
T ss_pred             CceEEEEeeccccc
Confidence            6 667899999976

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.13  E-value=6.8e-05  Score=62.00  Aligned_cols=164  Identities=16%  Similarity=0.145  Sum_probs=78.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhcCCcccccCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKDDRLAQPVPT   97 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~~~~~~~~~~   97 (249)
                      ++..|+++|+.|+||||.+..|...-..... .            ...++.++..|.-...+.  +..+... ...+...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~-~------------~g~~V~lit~Dt~R~aa~eQL~~~a~~-lgvpv~~  238 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSD-D------------KSLNIKIITIDNYRIGAKKQIQTYGDI-MGIPVKA  238 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhc-c------------CCCeEEEEeccCccHHHHHHHHHHhhc-CCcceEe
Confidence            3568999999999999999988642111000 0            123444444444222121  2222211 1011101


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      ...........-...+..++++||+|...... ....+..++......+-.++|+|++..  ..++...+..+.     .
T Consensus       239 ~~~~~~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~-----~  311 (388)
T PRK12723        239 IESFKDLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFS-----P  311 (388)
T ss_pred             eCcHHHHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhc-----C
Confidence            11111111111112456799999999653221 122333344433333468899999885  222222333331     1


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYG  206 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  206 (249)
                      --+-=+++||.|-..  ..-.+.+......
T Consensus       312 ~~~~~~I~TKlDet~--~~G~~l~~~~~~~  339 (388)
T PRK12723        312 FSYKTVIFTKLDETT--CVGNLISLIYEMR  339 (388)
T ss_pred             CCCCEEEEEeccCCC--cchHHHHHHHHHC
Confidence            124567899999643  2344444444443

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.11  E-value=4.8e-05  Score=57.40  Aligned_cols=45  Identities=16%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC-CcEEEEEecCCCC
Q psy871          141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS-CPVLILGNKIDKH  190 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~  190 (249)
                      ...+|.++.|+|.+.. ++...+ .+.++..+   .+ .++.+|+||.|-.
T Consensus       153 ~~~vD~vivVvDpS~~-sl~tae-ri~~L~~e---lg~k~i~~V~NKv~e~  198 (255)
T COG3640         153 IEGVDLVIVVVDPSYK-SLRTAE-RIKELAEE---LGIKRIFVVLNKVDEE  198 (255)
T ss_pred             ccCCCEEEEEeCCcHH-HHHHHH-HHHHHHHH---hCCceEEEEEeeccch
Confidence            4779999999999875 333222 44555444   45 8999999999854

>PRK13695 putative NTPase; Provisional

Probab=98.04  E-value=0.00012  Score=53.92  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=19.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+|+|+|++|+|||||+..+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999764

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.03  E-value=8.7e-06  Score=64.97  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      ...++++|++|+|||||+|+|.+..
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhchh
Confidence            3689999999999999999998654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.02  E-value=5e-05  Score=59.83  Aligned_cols=86  Identities=17%  Similarity=0.138  Sum_probs=60.9

Q ss_pred             cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHH--HHHHHhhhcccccCcccCCCCCC
Q psy871          142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEE--EIRQYFGLYGLTTGKVATPRSEM  219 (249)
Q Consensus       142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  219 (249)
                      ...|-+++|+.+.+|+.-..   .+.+++-.....++..++++||+||.++....  +.......+.             
T Consensus        78 ~n~d~~iiIvs~~~P~~~~~---~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~g-------------  141 (301)
T COG1162          78 ANNDQAIIVVSLVDPDFNTN---LLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIG-------------  141 (301)
T ss_pred             cccceEEEEEeccCCCCCHH---HHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCC-------------
Confidence            44777788888877654333   22222222222788888999999999864544  4555666665             


Q ss_pred             CCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          220 SGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       220 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                          .+++.+|++++.|++++..+|..+
T Consensus       142 ----y~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         142 ----YPVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             ----eeEEEecCcCcccHHHHHHHhcCC
Confidence                899999999999999999988764

>PRK00098 GTPase RsgA; Reviewed

Probab=98.00  E-value=1.4e-05  Score=64.15  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=21.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      ...++++|++|||||||+|+|.+..
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCc
Confidence            3478999999999999999997643

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.99  E-value=0.00012  Score=54.62  Aligned_cols=65  Identities=15%  Similarity=0.257  Sum_probs=42.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCC----CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRL----AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      +..-|+|+||+|||||||+++|.....    +...+|..+..+..    ......++     .+..|...+..+.|.+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~----~G~dY~fv-----s~~~F~~~i~~~~f~e   71 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE----EGKTYFFL-----TIEEFKKGIADGEFLE   71 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC----CCceeEeC-----CHHHHHHHHHcCCeEE
Confidence            345789999999999999999987542    23455566555555    33333333     4566666666666653

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.97  E-value=0.00018  Score=51.15  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=21.3

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...||++.|+|||||||++..+..
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e   27 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAE   27 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHH
Confidence            357999999999999999999863

>PRK13796 GTPase YqeH; Provisional

Probab=97.96  E-value=1.5e-05  Score=65.77  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=19.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..++.++|.+|||||||+|+|..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~  182 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIK  182 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHh
Confidence            45788999999999999999865

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.95  E-value=1.4e-05  Score=62.93  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ....+++|++|+|||||+|+|..
T Consensus       164 ~~~svl~GqSGVGKSSLiN~L~p  186 (301)
T COG1162         164 GKITVLLGQSGVGKSTLINALLP  186 (301)
T ss_pred             CCeEEEECCCCCcHHHHHHhhCc
Confidence            44789999999999999999964

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.95  E-value=4.2e-05  Score=44.32  Aligned_cols=46  Identities=28%  Similarity=0.460  Sum_probs=26.6

Q ss_pred             ccccceEEEEEECCChhhhHh--hHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871          141 ESLASSIVFLVDTSDRERFEE--SKSELQCLLTDESLASCPVLILGNKID  188 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D  188 (249)
                      .+..+++++++|++..+++.-  -...++++..  ...++|+++|.||+|
T Consensus        11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID   58 (58)
T ss_dssp             GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred             HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence            356899999999999877622  1223344422  235899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.93  E-value=6.6e-06  Score=48.91  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=19.1

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..+|.|+.||||||++.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.90  E-value=1.2e-05  Score=60.95  Aligned_cols=36  Identities=19%  Similarity=0.355  Sum_probs=28.5

Q ss_pred             CchHhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871            1 MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ||.+|+-        .-+.+...|+|+|++|||||||+++|...
T Consensus         1 ~~~~~~~--------~~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          1 MMNPWLF--------NKPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCcccc--------CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            6666653        33556778999999999999999999754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.89  E-value=1.3e-05  Score=59.76  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=20.3

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      --+++++||+|||||||++++-+
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            34799999999999999999954

>KOG1486|consensus

Probab=97.86  E-value=0.00013  Score=55.60  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=71.6

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESL  143 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~  143 (249)
                      .+.++.++|.|.+|||+++..+....-... .-...+....+..+...+..+.+.|.||..+- ......+.+.+...+.
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA-~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAA-SYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhh-ceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence            678999999999999999999886432211 11222333444455556677999999996543 3334456777788889


Q ss_pred             cceEEEEEECCChhhhHh-hHHHHHHH
Q psy871          144 ASSIVFLVDTSDRERFEE-SKSELQCL  169 (249)
Q Consensus       144 ~d~ii~v~d~~~~~~~~~-~~~~~~~~  169 (249)
                      +|.++.|+|++..+.-.. ++.++..+
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~v  166 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAV  166 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence            999999999998765543 44455544

>KOG1424|consensus

Probab=97.84  E-value=4e-05  Score=63.91  Aligned_cols=87  Identities=21%  Similarity=0.212  Sum_probs=64.5

Q ss_pred             hhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871          127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYG  206 (249)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  206 (249)
                      |+.+.+.|.++-+.++++|+||.++|+.+|--|...  .+..+..+ ....+..++++||+||.....+..+.+++..-+
T Consensus       158 FErNLE~WRQLWRVlErSDivvqIVDARnPllfr~~--dLe~Yvke-~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~n  234 (562)
T KOG1424|consen  158 FERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRSP--DLEDYVKE-VDPSKANVLLVNKADLLPPEQRVAWAEYFRQNN  234 (562)
T ss_pred             hhhCHHHHHHHHHHHhhcceEEEEeecCCccccCCh--hHHHHHhc-cccccceEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence            566666777777889999999999999998777543  23333222 125688899999999998666667777776544


Q ss_pred             cccCcccCCCCCCCCCceeEEEeeecc
Q psy871          207 LTTGKVATPRSEMSGRPIELFMCSVLM  233 (249)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~  233 (249)
                                       +++++-||..
T Consensus       235 -----------------i~~vf~SA~~  244 (562)
T KOG1424|consen  235 -----------------IPVVFFSALA  244 (562)
T ss_pred             -----------------ceEEEEeccc
Confidence                             8899999876

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.82  E-value=1.5e-05  Score=54.94  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +|+|.|+|||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

...

>KOG2485|consensus

Probab=97.80  E-value=5.1e-05  Score=59.54  Aligned_cols=30  Identities=20%  Similarity=0.552  Sum_probs=25.5

Q ss_pred             ccccceecceEEEeccCCcchHHHHHHHhc
Q psy871           14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.+....++++.|+|.||+|||||+|++..
T Consensus       136 ~irt~~~~~~vmVvGvPNVGKSsLINa~r~  165 (335)
T KOG2485|consen  136 FIRTLNSEYNVMVVGVPNVGKSSLINALRN  165 (335)
T ss_pred             hhcccCCceeEEEEcCCCCChHHHHHHHHH
Confidence            344467899999999999999999999864

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.79  E-value=3e-05  Score=56.31  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=22.4

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      --+++|+|++|||||||+|-+.+-+.
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhccC
Confidence            44799999999999999999987543

>KOG0780|consensus

Probab=97.79  E-value=0.00016  Score=58.45  Aligned_cols=121  Identities=21%  Similarity=0.181  Sum_probs=62.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHH--HHhc-CCccccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLH--MLKD-DRLAQPV   95 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~--~l~~-~~~~~~~   95 (249)
                      .++-.|.+||..|+||||.+-.|..-.     ..            ...++.++..|.--.-++.+  .... ...+.+ 
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~-----kk------------kG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y-  160 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYY-----KK------------KGYKVALVCADTFRAGAFDQLKQNATKARVPFY-  160 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHH-----Hh------------cCCceeEEeecccccchHHHHHHHhHhhCCeeE-
Confidence            456689999999999999998885311     00            22333444333322222211  1111 111111 


Q ss_pred             CCcccceec------eeccccccceEEEEEeCCCchh-hhhhHHHHhhhhccccccceEEEEEECCChhhh
Q psy871           96 PTLHPTRRV------WKDYFPAVDAIVFLVDTSDRER-FEESKSELQCLLTDESLASSIVFLVDTSDRERF  159 (249)
Q Consensus        96 ~~~~~~~~~------~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~  159 (249)
                       +.....+.      .-..+......++++||+|+.. -.++.+.+..... .-..|-+++|+|++-...-
T Consensus       161 -gsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~-ai~Pd~vi~VmDasiGQaa  229 (483)
T KOG0780|consen  161 -GSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSK-AIKPDEIIFVMDASIGQAA  229 (483)
T ss_pred             -ecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHh-hcCCCeEEEEEeccccHhH
Confidence             11110000      0122345566799999999543 2333343333322 2348999999999875443

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.77  E-value=7.3e-05  Score=54.94  Aligned_cols=45  Identities=16%  Similarity=0.138  Sum_probs=29.5

Q ss_pred             ceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       145 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      |++++|+|+..+.+..+-  .+.++.. ....+.|+++|+||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~~--~i~~~~~-l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRCP--QVEEAVL-QAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCCH--HHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence            789999999886433221  3333311 11256899999999999753

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG3886|consensus

Probab=97.76  E-value=8.4e-05  Score=55.86  Aligned_cols=115  Identities=19%  Similarity=0.305  Sum_probs=70.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC----CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      ...||+++|.+|||||++-..+..+...    ...+|++..-..++   --+++.+.-||.+|...++..+...+.    
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~R---flGnl~LnlwDcGgqe~fmen~~~~q~----   75 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVR---FLGNLVLNLWDCGGQEEFMENYLSSQE----   75 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhh---hhhhheeehhccCCcHHHHHHHHhhcc----
Confidence            3569999999999999998877654422    23334432222221   123344445999999988877653211    


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchh---hhhhHHHHhhhhccccccceEEEEE
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRER---FEESKSELQCLLTDESLASSIVFLV  151 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~---~~~~~~~~~~~~~~~~~~d~ii~v~  151 (249)
                                ...+.+....+.++|....+-   +......+..++.....+-+.+++-
T Consensus        76 ----------d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~h  124 (295)
T KOG3886|consen   76 ----------DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLH  124 (295)
T ss_pred             ----------hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEe
Confidence                      134566778899999987542   2223334455666666666665543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.73  E-value=2.2e-05  Score=59.60  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=19.5

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      -++|+||+|||||||||.+.+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999999965

>KOG2203|consensus

Probab=97.72  E-value=4.4e-05  Score=64.15  Aligned_cols=42  Identities=24%  Similarity=0.354  Sum_probs=34.6

Q ss_pred             HHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCC
Q psy871            6 DWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA   47 (249)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~   47 (249)
                      |+|-+-.+-.--+..=+.|+|+|+..+|||||+|-|.+.++.
T Consensus        22 ~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~   63 (772)
T KOG2203|consen   22 DYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNFR   63 (772)
T ss_pred             HHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccChH
Confidence            566666666666677789999999999999999999987766

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.68  E-value=4.1e-05  Score=55.84  Aligned_cols=62  Identities=19%  Similarity=0.347  Sum_probs=42.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC---CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR---LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .-++|.||+||||||++++|....   ++...+|..+..+.+    ......|+     -+..|-..+..+.+.
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv----~G~dY~Fv-----s~~EF~~~i~~~~fL   69 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEV----DGVDYFFV-----TEEEFEELIERDEFL   69 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCc----CCceeEeC-----CHHHHHHHHhcCCcE
Confidence            358899999999999999999765   336667777777776    44343333     334455555555544

>KOG2743|consensus

Probab=97.68  E-value=0.00018  Score=56.28  Aligned_cols=31  Identities=29%  Similarity=0.315  Sum_probs=25.4

Q ss_pred             cccceecceEEEeccCCcchHHHHHHHhcCC
Q psy871           15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .+...+-+.-.++|.-|||||||+|.++.+.
T Consensus        51 ~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~   81 (391)
T KOG2743|consen   51 SSLGARIPVTIITGYLGAGKTTLLNYILTGQ   81 (391)
T ss_pred             cCCCCccceEEEEecccCChHHHHHHHHccC
Confidence            3445677788999999999999999987553

>smart00072 GuKc Guanylate kinase homologues

Probab=97.65  E-value=0.00032  Score=52.23  Aligned_cols=61  Identities=20%  Similarity=0.250  Sum_probs=37.6

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC---CC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR---LA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~---~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      -|+++||+||||+|+.++|....   +.  ...+|.....+..    ......++     -+..+......+.+.
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~----~g~dy~fv-----s~~ef~~~i~~g~fv   69 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEV----NGVDYHFV-----SREEFEDDIKSGLFL   69 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCc----CCceEEEC-----CHHHHHHHHHcCCeE
Confidence            58999999999999999998774   22  3444555555444    22222222     345555555555443

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.65  E-value=6.7e-05  Score=57.30  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -|+++||+|+|||||++.+.+-.
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.63  E-value=5.8e-05  Score=56.04  Aligned_cols=39  Identities=28%  Similarity=0.350  Sum_probs=26.3

Q ss_pred             HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhc
Q psy871            4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      -|+.+...+. -....+...++|.|++|+|||+|++++..
T Consensus         8 e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen    8 EIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             HHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4677777776 56667778999999999999999999864

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.61  E-value=0.0014  Score=48.45  Aligned_cols=81  Identities=16%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      ....++++|+|+....  ...      ..+..+|.+++++..+.. +...+...+..+ +.   .+.|+.+|+||+|...
T Consensus        91 ~~~d~viiDtpp~~~~--~~~------~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l-~~---~~~~~~vV~N~~~~~~  157 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVI------ASLTGADAALLVTEPTPS-GLHDLERAVELV-RH---FGIPVGVVINKYDLND  157 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHH------HHHHcCCEEEEEecCCcc-cHHHHHHHHHHH-HH---cCCCEEEEEeCCCCCc
Confidence            3556899999964321  111      334679999999988854 344444333333 22   4578899999999754


Q ss_pred             CCCHHHHHHHhhhcc
Q psy871          192 AASEEEIRQYFGLYG  206 (249)
Q Consensus       192 ~~~~~~~~~~~~~~~  206 (249)
                      . ..+++.++++..+
T Consensus       158 ~-~~~~~~~~~~~~~  171 (179)
T cd03110         158 E-IAEEIEDYCEEEG  171 (179)
T ss_pred             c-hHHHHHHHHHHcC
Confidence            3 3445666555543

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.60  E-value=0.0012  Score=54.58  Aligned_cols=125  Identities=20%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhcCCcccccC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKDDRLAQPVP   96 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~~~~~~~~~   96 (249)
                      .++..|+++|-.||||||..--|..---.                 ...++.++..|.--..++  +..+...--...++
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk-----------------~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~  160 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK-----------------KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG  160 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHH-----------------cCCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence            55779999999999999998877531000                 122333333332222222  11111111000000


Q ss_pred             C--cccceecee---ccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHh
Q psy871           97 T--LHPTRRVWK---DYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEE  161 (249)
Q Consensus        97 ~--~~~~~~~~~---~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~  161 (249)
                      .  ...-.....   .........++++||+|+-...+ +...+ ..+...-..|=+++|+|+.......+
T Consensus       161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El-~~Ik~~~~P~E~llVvDam~GQdA~~  230 (451)
T COG0541         161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDEL-KEIKEVINPDETLLVVDAMIGQDAVN  230 (451)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHH-HHHHhhcCCCeEEEEEecccchHHHH
Confidence            0  000000111   12223345699999999654332 22222 22334466899999999988654443

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.0002  Score=66.41  Aligned_cols=76  Identities=22%  Similarity=0.197  Sum_probs=44.3

Q ss_pred             EEEEEeCCCchhhh-----hhHHHHhhhh------ccccccceEEEEEECCChhhh---------HhhHHHHHHHHhccC
Q psy871          115 IVFLVDTSDRERFE-----ESKSELQCLL------TDESLASSIVFLVDTSDRERF---------EESKSELQCLLTDES  174 (249)
Q Consensus       115 ~~~v~D~~g~~~~~-----~~~~~~~~~~------~~~~~~d~ii~v~d~~~~~~~---------~~~~~~~~~~~~~~~  174 (249)
                      .-.++||.|.....     .....+..++      +...-.++||+.+|+.+.-+.         ..++.-+.++.. ..
T Consensus       175 eaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~-tL  253 (1188)
T COG3523         175 EAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE-TL  253 (1188)
T ss_pred             ceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hh
Confidence            45678988844322     2223344332      223447999999999763211         113333444422 22


Q ss_pred             CCCCcEEEEEecCCCCC
Q psy871          175 LASCPVLILGNKIDKHG  191 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~  191 (249)
                      ....|+.+++||.|+..
T Consensus       254 ~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         254 HARLPVYLVLTKADLLP  270 (1188)
T ss_pred             ccCCceEEEEecccccc
Confidence            25799999999999976

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.59  E-value=0.00046  Score=57.71  Aligned_cols=126  Identities=14%  Similarity=0.167  Sum_probs=81.6

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh----------hhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR----------ERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                      ....+.++|..|+.....-|.      ......+++++|++.++-          ..+.+....+..+.......+.|++
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~------~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~ii  307 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWI------HCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPII  307 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGG------GGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEE
T ss_pred             cccccceecCCCCchhhhhHH------HHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceE
Confidence            566789999999864433333      556689999999998753          2244445577777777777899999


Q ss_pred             EEEecCCCCC------C--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871          182 ILGNKIDKHG------A--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF  241 (249)
Q Consensus       182 vv~nK~Dl~~------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  241 (249)
                      |++||.|+..      .              ...+++..++..........     ....+.+.+..++|.....+..+|
T Consensus       308 l~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~-----~~~~~~~~~h~t~a~d~~~~~~v~  382 (389)
T PF00503_consen  308 LFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRN-----NSPSRRIYVHFTCATDTENIRKVF  382 (389)
T ss_dssp             EEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHST-----TTTCS-EEEEEESTTSHHHHHHHH
T ss_pred             EeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccC-----CCCCcceEEEEeeecccHHHHHHH
Confidence            9999999632      0              23344444443322111000     000055788899999999999999


Q ss_pred             HHHhhhc
Q psy871          242 RWLANYI  248 (249)
Q Consensus       242 ~~l~~~i  248 (249)
                      +.+.+.|
T Consensus       383 ~~v~~~i  389 (389)
T PF00503_consen  383 NAVKDII  389 (389)
T ss_dssp             HHHHHHH
T ss_pred             HHhcCcC
Confidence            9887654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.58  E-value=5.5e-05  Score=55.81  Aligned_cols=23  Identities=39%  Similarity=0.548  Sum_probs=21.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+|+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999865

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.55  E-value=6.8e-05  Score=46.15  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.3

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .|++.|++||||||+.++|...
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999653

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK08118 topology modulation protein; Reviewed

Probab=97.55  E-value=6e-05  Score=55.14  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.6

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+|+|+|++|||||||...|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999999753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.54  E-value=6.8e-05  Score=52.90  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|+|||||++.|.+.
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CEEEEEccCCCccccceeeeccc
Confidence            47899999999999999999764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK08233 hypothetical protein; Provisional

Probab=97.54  E-value=6.3e-05  Score=55.82  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=22.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      |+...|+|.|++|||||||.++|...
T Consensus         1 ~~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          1 KKTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhh
Confidence            34578999999999999999999764

>PRK07261 topology modulation protein; Provisional

Probab=97.53  E-value=6.6e-05  Score=55.18  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=19.5

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      +|+|+|++|||||||...|..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999999864

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.53  E-value=9.6e-05  Score=60.04  Aligned_cols=39  Identities=28%  Similarity=0.452  Sum_probs=28.8

Q ss_pred             HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871            4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +-+|++.+.  .|...+..-++++||||+|||||.++|...
T Consensus        63 lv~~l~~~a--~g~~~~r~il~L~GPPGsGKStla~~La~~  101 (361)
T smart00763       63 FVNYFKSAA--QGLEERKQILYLLGPVGGGKSSLVECLKRG  101 (361)
T ss_pred             HHHHHHHHH--hcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            344555444  344556667899999999999999999853

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.52  E-value=5.9e-05  Score=54.99  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=17.5

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ||+|+|.+++|||||+++|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999754

>PRK14530 adenylate kinase; Provisional

Probab=97.52  E-value=6.9e-05  Score=57.29  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=21.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..++|+|+|+|||||||+.+.|...
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999753

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.52  E-value=8e-05  Score=60.06  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=21.5

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      -++++||+|+||||||+.+.+-+-
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999998654

>KOG2484|consensus

Probab=97.50  E-value=0.00026  Score=57.45  Aligned_cols=69  Identities=14%  Similarity=0.099  Sum_probs=49.9

Q ss_pred             hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871          135 QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYG  206 (249)
Q Consensus       135 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  206 (249)
                      +.+...++.+|+|+.|+|+.+|.+-...  .+.+..... ..++..|+|+||+|++.....+++..+++...
T Consensus       138 ke~rkvve~sDVVleVlDARDPlgtR~~--~vE~~V~~~-~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~  206 (435)
T KOG2484|consen  138 KEFRKVVEASDVVLEVLDARDPLGTRCP--EVEEAVLQA-HGNKKLILVLNKIDLVPREVVEKWLVYLRREG  206 (435)
T ss_pred             HHHHHHHhhhheEEEeeeccCCCCCCCh--hHHHHHHhc-cCCceEEEEeehhccCCHHHHHHHHHHHHhhC
Confidence            4455677899999999999998776543  233332211 14589999999999998777777777777654

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.50  E-value=0.00017  Score=50.94  Aligned_cols=21  Identities=33%  Similarity=0.601  Sum_probs=19.5

Q ss_pred             EEEeccCCcchHHHHHHHhcC
Q psy871           24 LLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~   44 (249)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.49  E-value=8e-05  Score=49.72  Aligned_cols=21  Identities=33%  Similarity=0.268  Sum_probs=19.3

Q ss_pred             ceEEEeccCCcchHHHHHHHh
Q psy871           22 GKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~   42 (249)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            468999999999999999985

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.49  E-value=8e-05  Score=52.91  Aligned_cols=20  Identities=30%  Similarity=0.514  Sum_probs=18.5

Q ss_pred             EEEeccCCcchHHHHHHHhc
Q psy871           24 LLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~   43 (249)
                      |+++|+||||||||.+.|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999963

...

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.49  E-value=0.003  Score=54.49  Aligned_cols=26  Identities=31%  Similarity=0.423  Sum_probs=21.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +..-+++.||+|+||||.++.|+.+.
T Consensus        44 ~~~iLlLtGP~G~GKtttv~~La~el   69 (519)
T PF03215_consen   44 PKRILLLTGPSGCGKTTTVKVLAKEL   69 (519)
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHh
Confidence            34577889999999999999998653

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.48  E-value=8.1e-05  Score=56.63  Aligned_cols=27  Identities=22%  Similarity=0.239  Sum_probs=23.9

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..+...|+|.|++|||||||.+.|...
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999864

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.47  E-value=0.00013  Score=53.45  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=20.0

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -+.++||+|||||||++.+...+
T Consensus        30 f~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          30 FVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhh
Confidence            46789999999999999998654

>KOG0469|consensus

Probab=97.44  E-value=0.00058  Score=57.16  Aligned_cols=83  Identities=17%  Similarity=0.225  Sum_probs=55.4

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC-
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG-  191 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-  191 (249)
                      +..+.++|.||+-.|.+-..      ..++..|..+.|+|.-+.--.+. +..+.+.+.    ..+.-++++||.|..- 
T Consensus        97 ~FLiNLIDSPGHVDFSSEVT------AALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~----ERIkPvlv~NK~DRAlL  165 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSEVT------AALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLVMNKMDRALL  165 (842)
T ss_pred             ceeEEeccCCCcccchhhhh------heeEeccCcEEEEEccCceEech-HHHHHHHHH----hhccceEEeehhhHHHH
Confidence            45688999999999987766      56677899999999877422221 113333333    3456677899999532 


Q ss_pred             --CCCHHHHHHHhhhcc
Q psy871          192 --AASEEEIRQYFGLYG  206 (249)
Q Consensus       192 --~~~~~~~~~~~~~~~  206 (249)
                        +...+++-+-+++.-
T Consensus       166 ELq~~~EeLyqtf~R~V  182 (842)
T KOG0469|consen  166 ELQLSQEELYQTFQRIV  182 (842)
T ss_pred             hhcCCHHHHHHHHHHHH
Confidence              566777766666544

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.44  E-value=0.00011  Score=53.80  Aligned_cols=26  Identities=35%  Similarity=0.289  Sum_probs=22.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ++.+.++|+|++|||||||+++|...
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHH
Confidence            45668999999999999999999753

>KOG2484|consensus

Probab=97.43  E-value=0.00017  Score=58.47  Aligned_cols=38  Identities=18%  Similarity=0.230  Sum_probs=31.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPI   56 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~   56 (249)
                      .+.++++|+|-||+||||++|+|.........++.+.+
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT  287 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT  287 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch
Confidence            77899999999999999999999988876544444433

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.43  E-value=0.00011  Score=51.99  Aligned_cols=22  Identities=36%  Similarity=0.507  Sum_probs=19.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.|+|+|+.|||||||+..|..
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~   22 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLIN   22 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999965

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.42  E-value=0.00011  Score=54.17  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      --.++|+|+.|||||||++.+.+.
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            348999999999999999999875

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.42  E-value=0.00011  Score=54.77  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.1

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|++|||||||+++|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999664

>TIGR00235 udk uridine kinase

Probab=97.40  E-value=0.00011  Score=55.78  Aligned_cols=26  Identities=23%  Similarity=0.197  Sum_probs=22.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+...|+|+|++|||||||+++|.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.39  E-value=0.00016  Score=58.67  Aligned_cols=24  Identities=38%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      -++++||+|+||||+|+.+.+-+-
T Consensus        33 f~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          33 FVTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999987543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.38  E-value=0.00012  Score=55.32  Aligned_cols=21  Identities=38%  Similarity=0.580  Sum_probs=19.5

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      -|+++|++|||||||++.|-+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999999965

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.38  E-value=0.0012  Score=52.30  Aligned_cols=60  Identities=13%  Similarity=0.135  Sum_probs=38.8

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHh
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLK   87 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~   87 (249)
                      ..+.++++++|++|-|||++++++.........+.    ..      ...-+.+.-.+.++...|-..+.
T Consensus        58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~----~~------~~PVv~vq~P~~p~~~~~Y~~IL  117 (302)
T PF05621_consen   58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED----AE------RIPVVYVQMPPEPDERRFYSAIL  117 (302)
T ss_pred             ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC----Cc------cccEEEEecCCCCChHHHHHHHH
Confidence            45667999999999999999999987554322211    11      11233445566666666655554

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.38  E-value=0.00013  Score=53.73  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=19.4

Q ss_pred             ceEEEeccCCcchHHHHHHHh
Q psy871           22 GKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~   42 (249)
                      -+++|+|+.|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            488999999999999999985

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.37  E-value=0.00027  Score=50.98  Aligned_cols=41  Identities=27%  Similarity=0.329  Sum_probs=30.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCch
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK   79 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gk   79 (249)
                      -.++|||++|||||||+--|.+-+-.                 .++.+.+.|.+..+.
T Consensus        37 e~vaiVG~SGSGKSTLl~vlAGLd~~-----------------ssGeV~l~G~~L~~l   77 (228)
T COG4181          37 ETVAIVGPSGSGKSTLLAVLAGLDDP-----------------SSGEVRLLGQPLHKL   77 (228)
T ss_pred             ceEEEEcCCCCcHHhHHHHHhcCCCC-----------------CCceEEEcCcchhhc
Confidence            37899999999999999999764433                 455666666655543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.36  E-value=0.0023  Score=49.82  Aligned_cols=29  Identities=31%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             cccceec-ceEEEeccCCcchHHHHHHHhc
Q psy871           15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +++.-++ -.++|+||-|+|||||+++|.+
T Consensus        21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          21 LSFSIPKGEITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             ceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3444333 4689999999999999999975

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.36  E-value=0.00014  Score=53.83  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|++|||||||+++|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.36  E-value=0.00029  Score=50.61  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=23.8

Q ss_pred             hcccccceec-ceEEEeccCCcchHHHHHHHhc
Q psy871           12 LGYLGLWTKS-GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        12 ~~~~~~~~~~-~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.-+++.-+. -.++++||+|+|||||++.++.
T Consensus        19 l~~isl~v~~Ge~iaitGPSG~GKStllk~va~   51 (223)
T COG4619          19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS   51 (223)
T ss_pred             ecceeeeecCCceEEEeCCCCccHHHHHHHHHh
Confidence            3334444333 3799999999999999999965

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.35  E-value=0.00015  Score=54.09  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|+++|+|||||||+.++|..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999974

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.35  E-value=0.00016  Score=52.90  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=18.7

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +|.|+|+||+|||||++++...
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~   22 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEE   22 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHH
Confidence            6899999999999999998743

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.33  E-value=0.00038  Score=51.78  Aligned_cols=63  Identities=21%  Similarity=0.308  Sum_probs=36.7

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCC---CC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDR---LA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~---~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ..-|+|+||+|||||||.++|....   +.  .+.+|..+..+..    ......++     .+..|.+....+.+.
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~----~g~~y~fv-----s~~~f~~~~~~~~fi   69 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEV----DGVDYHFV-----SKEEFERMIKAGEFI   69 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-----TTTSEEE-------HHHHHHHHHTTHEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCccccc----CCcceEEE-----eechhhhhhccccEE
Confidence            3468899999999999999998643   21  3445555555444    22222222     455665555555544

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>KOG1424|consensus

Probab=97.33  E-value=0.00015  Score=60.62  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=28.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   54 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~   54 (249)
                      ...|++||.||+||||++|+|.+.....+..|.|
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPG  347 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPG  347 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCC
Confidence            4799999999999999999999988664444443

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.33  E-value=0.00016  Score=55.27  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|||||||++.|.+.
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999875

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.33  E-value=0.00016  Score=55.34  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -.++|+|+.|+|||||++.|++..
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCc
Confidence            378999999999999999998753

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.33  E-value=0.00031  Score=53.48  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=21.0

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++++|++|+|||||.+.|.+-+
T Consensus        35 ~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          35 TLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             EEEEEcCCCCCHHHHHHHHhccc
Confidence            78999999999999999998743

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.33  E-value=0.00019  Score=50.39  Aligned_cols=27  Identities=30%  Similarity=0.369  Sum_probs=22.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA   47 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~   47 (249)
                      ...++++|++|+||||++..+...-..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence            357999999999999999999765433

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.32  E-value=0.00017  Score=55.00  Aligned_cols=32  Identities=31%  Similarity=0.418  Sum_probs=24.3

Q ss_pred             ccccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871           14 YLGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        14 ~~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -+++.-++ -.++|+|+.|+|||||++.|++..
T Consensus        19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            33444333 378999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.31  E-value=0.00018  Score=49.94  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=19.0

Q ss_pred             EEEeccCCcchHHHHHHHhcC
Q psy871           24 LLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~   44 (249)
                      |+|.|++||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999754

...

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.31  E-value=0.00023  Score=56.60  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=21.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .++..|+|.|++|||||||++.|.+
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~   84 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQA   84 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5567999999999999999987753

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.31  E-value=0.00018  Score=53.86  Aligned_cols=23  Identities=43%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+|+.|||||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.30  E-value=0.00018  Score=54.85  Aligned_cols=22  Identities=41%  Similarity=0.513  Sum_probs=20.8

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|+|||||++.+.+.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            8999999999999999999874

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.30  E-value=0.00018  Score=54.50  Aligned_cols=33  Identities=30%  Similarity=0.255  Sum_probs=24.9

Q ss_pred             cccccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871           13 GYLGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        13 ~~~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .-.++.-++ -.++|+|+.|||||||++.|++..
T Consensus        17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            333444333 379999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.30  E-value=0.00018  Score=55.74  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+|+.|||||||++.|.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.29  E-value=0.00078  Score=53.76  Aligned_cols=70  Identities=19%  Similarity=0.198  Sum_probs=41.1

Q ss_pred             cceEEEEEeCCCchh-hhhhHHHHhhhhccccccce-----EEEEEECCCh-hhhHhhHHHHHHHHhccCCCCCcEEEEE
Q psy871          112 VDAIVFLVDTSDRER-FEESKSELQCLLTDESLASS-----IVFLVDTSDR-ERFEESKSELQCLLTDESLASCPVLILG  184 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~-----ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~  184 (249)
                      .+..+.++||+|+-. -..+...+.+..+.....+.     +++++|++.. +.+...+ .+.+..      + --=+++
T Consensus       220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk-~F~eav------~-l~GiIl  291 (340)
T COG0552         220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK-IFNEAV------G-LDGIIL  291 (340)
T ss_pred             cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH-HHHHhc------C-CceEEE
Confidence            345589999999432 23344555555555554444     8899999884 3333332 333331      1 124679


Q ss_pred             ecCCC
Q psy871          185 NKIDK  189 (249)
Q Consensus       185 nK~Dl  189 (249)
                      ||+|-
T Consensus       292 TKlDg  296 (340)
T COG0552         292 TKLDG  296 (340)
T ss_pred             Eeccc
Confidence            99994

>PRK01889 GTPase RsgA; Reviewed

Probab=97.29  E-value=0.00044  Score=56.98  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=20.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+++++|.+|+|||||+|.|.+.
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~  218 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGE  218 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            48999999999999999999764

>PTZ00301 uridine kinase; Provisional

Probab=97.28  E-value=0.0002  Score=54.36  Aligned_cols=24  Identities=17%  Similarity=0.198  Sum_probs=20.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHh
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~   42 (249)
                      |+..-|+|.|++|||||||.+.|.
T Consensus         1 ~~~~iIgIaG~SgSGKTTla~~l~   24 (210)
T PTZ00301          1 MPCTVIGISGASGSGKSSLSTNIV   24 (210)
T ss_pred             CCCEEEEEECCCcCCHHHHHHHHH
Confidence            355789999999999999998775

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.28  E-value=0.00035  Score=53.24  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      =+|+++|+.|||||||++-|.+.
T Consensus        54 e~vGiiG~NGaGKSTLlkliaGi   76 (249)
T COG1134          54 ERVGIIGHNGAGKSTLLKLIAGI   76 (249)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCc
Confidence            38999999999999999999764

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.28  E-value=0.00021  Score=59.59  Aligned_cols=37  Identities=22%  Similarity=0.385  Sum_probs=29.1

Q ss_pred             HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871            4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -|+++....+.    .-..+|+|+|++|+|||||+++|...
T Consensus       206 ~w~~i~~~vr~----~~~~~IvI~G~~gsGKTTL~~~La~~  242 (399)
T PRK08099        206 YWEYIPTEVRP----FFVRTVAILGGESSGKSTLVNKLANI  242 (399)
T ss_pred             HHHhcCHHHhh----CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            57777765532    23568999999999999999999864

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.27  E-value=0.00018  Score=54.20  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=19.3

Q ss_pred             EEEeccCCcchHHHHHHHhcC
Q psy871           24 LLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~   44 (249)
                      |+|+|++|||||||.++|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.27  E-value=0.00021  Score=54.21  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=21.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|+|||||++.|.+.
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.27  E-value=0.00021  Score=54.56  Aligned_cols=24  Identities=42%  Similarity=0.499  Sum_probs=21.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -.++|+|+.|||||||++.+.+..
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999998753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.00021  Score=53.33  Aligned_cols=23  Identities=43%  Similarity=0.606  Sum_probs=20.7

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+||.|+|||||++.|+++-
T Consensus        29 v~ailGPNGAGKSTlLk~LsGel   51 (259)
T COG4559          29 VLAILGPNGAGKSTLLKALSGEL   51 (259)
T ss_pred             EEEEECCCCccHHHHHHHhhCcc
Confidence            67899999999999999998753

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.26  E-value=0.00022  Score=50.83  Aligned_cols=24  Identities=29%  Similarity=0.592  Sum_probs=21.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -.++|+|+.|+|||||++.|.+..
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCC
Confidence            367899999999999999997753

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.26  E-value=0.00021  Score=54.50  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=20.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|||||||++.|.+.
T Consensus        28 ~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          28 EFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999875

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.26  E-value=0.00022  Score=54.75  Aligned_cols=23  Identities=39%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|||||||++.|.+.
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999875

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.26  E-value=0.00021  Score=54.87  Aligned_cols=24  Identities=38%  Similarity=0.434  Sum_probs=21.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -.++|+|+.|||||||++.|.+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999998753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.26  E-value=0.00022  Score=54.43  Aligned_cols=23  Identities=39%  Similarity=0.509  Sum_probs=20.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|||||||++.|.+.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          27 EFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999875

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.26  E-value=0.00021  Score=52.94  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .|+|+|++|||||||++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            58999999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	249
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		4e-55
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		5e-55
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		6e-55
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		2e-54
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		9e-42
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		9e-36
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		4e-12
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		3e-11
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		3e-11
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		3e-11
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		4e-11
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		4e-11
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		5e-11
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		7e-11
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		1e-10
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-10
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		1e-10
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		1e-10
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		1e-10
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-10
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		3e-10
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		3e-10
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		3e-10
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-08
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		4e-10
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		4e-10
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		5e-10
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		6e-10
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		6e-10
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		6e-10
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		8e-10
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		8e-10
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		1e-09
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		1e-09
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		1e-09
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		1e-09
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		1e-09
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		1e-09
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-09
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-09
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		3e-09
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		6e-09
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		8e-09
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		8e-09
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		8e-09
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		1e-08
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		1e-08
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-08
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		2e-08
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		2e-08
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-08
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		3e-08
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		2e-07
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		3e-07

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score =  211 bits (536), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 118/250 (47%), Positives = 145/250 (58%), Gaps = 59/250 (23%)
Query: 4   IWDW----FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGY 59
           I+DW    F+ VL +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP    
Sbjct: 4   IFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60  LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV 119
           L +      + F   D  G                       RRVWK+Y PA++ IVFLV
Sbjct: 64  LTI----AGMTFTTFDLGGHIQ-------------------ARRVWKNYLPAINGIVFLV 100
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
           D +D ER  ESK EL  L+TD                                E++A+ P
Sbjct: 101 DCADHERLLESKEELDSLMTD--------------------------------ETIANVP 128
Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
           +LILGNKID+  A SEE +R+ FGLYG TTGK +    E++ RP+E+FMCSVL RQGYG+
Sbjct: 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188
Query: 240 GFRWLANYID 249
           GFRW+A YID
Sbjct: 189 GFRWMAQYID 198

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score =  210 bits (535), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 110/216 (50%), Positives = 134/216 (62%), Gaps = 54/216 (25%)
Query: 56  ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-------------- 101
           +L +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHPT              
Sbjct: 12  VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 71
Query: 102 --------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDT 153
                   RRVWK+Y PA++ IVFL                                VD 
Sbjct: 72  DLGGHIQARRVWKNYLPAINGIVFL--------------------------------VDC 99
Query: 154 SDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213
           +D ER  ESK EL  L+TDE++A+ P+LILGNKID+  A SEE +R+ FGLYG TTGK +
Sbjct: 100 ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS 159
Query: 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
               E++ RP+E+FMCSVL RQGYG+GFRW+A YID
Sbjct: 160 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 195

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score =  210 bits (535), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 110/216 (50%), Positives = 134/216 (62%), Gaps = 54/216 (25%)
Query: 56  ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-------------- 101
           +L +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHPT              
Sbjct: 6   VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 65
Query: 102 --------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDT 153
                   RRVWK+Y PA++ IVFL                                VD 
Sbjct: 66  DLGGGIQARRVWKNYLPAINGIVFL--------------------------------VDC 93
Query: 154 SDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213
           +D ER  ESK EL  L+TDE++A+ P+LILGNKID+  A SEE +R+ FGLYG TTGK +
Sbjct: 94  ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS 153
Query: 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
               E++ RP+E+FMCSVL RQGYG+GFRW+A YID
Sbjct: 154 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 189

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/216 (50%), Positives = 133/216 (61%), Gaps = 54/216 (25%)
Query: 56  ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT-------------- 101
           +L +LGL+ KSGKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHPT              
Sbjct: 25  VLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 84
Query: 102 --------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDT 153
                   RRVWK+Y PA++ IVFL                                VD 
Sbjct: 85  DLGGHEQARRVWKNYLPAINGIVFL--------------------------------VDC 112
Query: 154 SDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213
           +D  R  ESK EL  L+TDE++++ P+LILGNKID+  A SEE++R+ FGLYG TTGK  
Sbjct: 113 ADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGN 172
Query: 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID 249
               E++ RP+E+FMCSVL RQGYG+GFRWL+ YID
Sbjct: 173 VTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID 208

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score =  166 bits (421), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 105/247 (42%), Positives = 125/247 (50%), Gaps = 60/247 (24%)
Query: 2   FQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLG 61
           + I+ WF  VL  LGLW K GKLLFLGLDNAGKTTLLHMLK+DRLA   PT HP    L 
Sbjct: 4   WDIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELA 63
Query: 62  LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDT 121
           +    G + F   D  G                       RR+WKDYFP V+ IVFLVD 
Sbjct: 64  I----GNIKFTTFDLGGHIQ-------------------ARRLWKDYFPEVNGIVFLVDA 100
Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
           +D ERF+                                E++ EL  L     L   P +
Sbjct: 101 ADPERFD--------------------------------EARVELDALFNIAELKDVPFV 128
Query: 182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241
           ILGNKID   A SE E+R   GL   TTG   + R E   RP+E+FMCSV+MR GY + F
Sbjct: 129 ILGNKIDAPNAVSEAELRSALGLLN-TTG---SQRIE-GQRPVEVFMCSVVMRNGYLEAF 183
Query: 242 RWLANYI 248
           +WL+ YI
Sbjct: 184 QWLSQYI 190

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score =  146 bits (369), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/203 (44%), Positives = 106/203 (52%), Gaps = 59/203 (29%)
Query: 67  GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT----------------------RRV 104
           GKLLFLGLDNAGKTTLLHMLK+DRLA   PT HPT                      RR+
Sbjct: 2   GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 61
Query: 105 WKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS 164
           WKDYFP V+ IVFLVD +D ERF+                                E++ 
Sbjct: 62  WKDYFPEVNGIVFLVDAADPERFD--------------------------------EARV 89
Query: 165 ELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI 224
           EL  L     L   P +ILGNKID   A SE E+R   GL   TTG   + R E   RP+
Sbjct: 90  ELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTG---SQRIE-GQRPV 144
Query: 225 ELFMCSVLMRQGYGDGFRWLANY 247
           E+FMCSV+MR GY + F+WL+ Y
Sbjct: 145 EVFMCSVVMRNGYLEAFQWLSQY 167

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 26/196 (13%)
Query: 57  LGYLGLWT----KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAV 112
           L +  LW+    +  K++ +GLDNAGKTT+L+    + +    PT+        +     
Sbjct: 3   LIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSN----VEEIVVK 58
Query: 113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD 172
           +    + D   +E    S +      T  S    I+ +VD+ DRER   +K EL  +L  
Sbjct: 59  NTHFLMWDIGGQESLRSSWN------TYYSNTEFIILVVDSIDRERLAITKEELYRMLAH 112
Query: 173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL 232
           E L    VLI  NK D  G  +  EI +Y  L            S +   P  +  C  L
Sbjct: 113 EDLRKAAVLIFANKQDMKGCMTAAEISKYLTL------------SSIKDHPWHIQSCCAL 160
Query: 233 MRQGYGDGFRWLANYI 248
             +G   G  W+ + I
Sbjct: 161 TGEGLCQGLEWMTSRI 176

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 25/129 (19%)
Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGL-DNAGKTT 81
           +LL LGLDNAGKTT+L         + V T+ P LG+  + T   +   L + D  G+ +
Sbjct: 20  RLLMLGLDNAGKTTILKKFN----GEDVDTISPTLGF-NIKTLEHRGFKLNIWDVGGQKS 74
Query: 82  LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE 141
           L                   R  W++YF + D ++++VD++DR+R ++ + ELQ LL +E
Sbjct: 75  L-------------------RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 115
Query: 142 SLASSIVFL 150
            LA + + +
Sbjct: 116 RLAGATLLI 124

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 25/129 (19%)
Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGL-DNAGKTT 81
           +LL LGLDNAGKTT+L         + V T+ P LG+  + T   +   L + D  G+ +
Sbjct: 20  RLLMLGLDNAGKTTILKKFN----GEDVDTISPTLGF-NIKTLEHRGFKLNIWDVGGQKS 74
Query: 82  LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE 141
           L                   R  W++YF + D ++++VD++DR+R ++ + ELQ LL +E
Sbjct: 75  L-------------------RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE 115
Query: 142 SLASSIVFL 150
            LA + + +
Sbjct: 116 RLAGATLLI 124

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 23/128 (17%)
Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
           +LL LGLDNAGKTT+L         + V T+ P LG+  + T   +   L + + G    
Sbjct: 3   RLLMLGLDNAGKTTILKKFN----GEDVDTISPTLGF-NIKTLEHRGFKLNIWDVGG--- 54
Query: 83  LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
                          L   R  W++YF + D ++++VD++DR+R ++ + ELQ LL +E 
Sbjct: 55  ---------------LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 99
Query: 143 LASSIVFL 150
           LA + + +
Sbjct: 100 LAGATLLI 107

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 22/105 (20%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
           +LL LGLDNAGKTT+L     + +    PTL                         R  W
Sbjct: 18  RLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 77
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
           ++YF + D ++++VD++DR+R ++ + ELQ LL +E LA + + +
Sbjct: 78  RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI 122

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 62  LW--TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV 119
           LW   K  ++L LGLD AGKTT+L+ L+   +    PT+             ++      
Sbjct: 12  LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGG 71
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
            TS R  +       +C   D    ++++F+VD++D++R   +  EL  +L +E L    
Sbjct: 72  QTSIRPYW-------RCYYAD---TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 121
Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
           +L+  NK D+ GA S  E+ +   L             E+  R   +   S +  +G  +
Sbjct: 122 LLVFANKQDQPGALSASEVSKELNLV------------ELKDRSWSIVASSAIKGEGITE 169
Query: 240 GFRWLANYI 248
           G  WL + I
Sbjct: 170 GLDWLIDVI 178

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 62  LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTL-HPTRRVWKDYFPAVDAIVFLV 119
            W +  +L  +GL  +GKTT ++++   +  +  +PT+    R++ K      +  + L 
Sbjct: 27  FWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG-----NVTIKLW 81
Query: 120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
           D   + RF  S  E  C        S+IV++VD +D+E+ E SK+EL  LL    L   P
Sbjct: 82  DIGGQPRFR-SMWERYC-----RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 135
Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213
           VL+LGNK D  GA  E+E+ +   L  +   ++ 
Sbjct: 136 VLVLGNKRDLPGALDEKELIEKMNLSAIQDREIC 169

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 23/118 (19%)
Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT----------------------LHPT 101
           T+  ++L LGLD AGKTT+L+ L+   +   +PT                      L   
Sbjct: 2   TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 61
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSI-VFLVDTSDRER 158
           R  W+ Y+   DA++++VD+ DR+R   SKSEL  +L +E L  +I V   +  D E+
Sbjct: 62  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 119

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           ++L LGLDNAGKTTLL  L  + ++   PT             +V +  F ++  D    
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDISHITPTQGFN-------IKSVQSQGFKLNVWDIGGL 58
Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
            + +   +    +  +   +++++D++DR+RFEE+  EL  LL +E L+  PVLI  NK 
Sbjct: 59  RKIRPYWRSYFENTDI---LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 115
Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
           D   AA   EI +   L+             +  R  ++  CS L  +G  DG  W+   
Sbjct: 116 DLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVCKN 163
Query: 248 I 248
           +
Sbjct: 164 V 164

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 23/138 (16%)
Query: 13  GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFL 72
           G  GL  K  ++L LGLD AGKTT+L+ LK   L Q V T+ P +G+         + F 
Sbjct: 314 GIEGLSNKEMRILMLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFN 369
Query: 73  GLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS 132
             D  G+  +                   R +W+ Y+     ++F+VD +DR+R +E++ 
Sbjct: 370 VWDVGGQDKI-------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 410
Query: 133 ELQCLLTDESLASSIVFL 150
           EL  ++ D  +  +I+ +
Sbjct: 411 ELHRIINDREMRDAIILI 428

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 22/108 (20%)
Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTR 102
           K  ++L +GLD AGKTT+L+ LK   +   +PT+                         R
Sbjct: 28  KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIR 87
Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
            +W+ YF     ++F+VD++DRER +ES  ELQ +L ++ L  +++ +
Sbjct: 88  PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLV 135

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 77/204 (37%), Gaps = 66/204 (32%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
           ++L LGLDNAGKTTLL  L  + ++   PT                          R  W
Sbjct: 18  RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYW 77
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
           + YF   D +++++D++DR+RFEE                       T         + +
Sbjct: 78  RSYFENTDILIYVIDSADRKRFEE-----------------------TGQELTELLEEEK 114
Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
           L C+         PVLI  NK D   AA   EI +   L+             +  R  +
Sbjct: 115 LSCV---------PVLIFANKQDLLTAAPASEIAEGLNLH------------TIRDRVWQ 153
Query: 226 LFMCSVLMRQGYGDGFRWLANYID 249
           +  CS L  +G  DG  W+   ++
Sbjct: 154 IQSCSALTGEGVQDGMNWVCKNVN 177

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 77/204 (37%), Gaps = 66/204 (32%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
           ++L LGLDNAGKTTLL  L  + ++   PT                          R  W
Sbjct: 19  RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYW 78
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
           + YF   D +++++D++DR+RFEE                       T         + +
Sbjct: 79  RSYFENTDILIYVIDSADRKRFEE-----------------------TGQELTELLEEEK 115
Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
           L C+         PVLI  NK D   AA   EI +   L+             +  R  +
Sbjct: 116 LSCV---------PVLIFANKQDLLTAAPASEIAEGLNLH------------TIRDRVWQ 154
Query: 226 LFMCSVLMRQGYGDGFRWLANYID 249
           +  CS L  +G  DG  W+   ++
Sbjct: 155 IQSCSALTGEGVQDGMNWVCKNVN 178

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 22/108 (20%)
Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTR 102
           K  ++L +GLD AGKTT+L+ +K   +   +PT+                         R
Sbjct: 16  KDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIR 75
Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
            +W+ Y+   D ++F+VD++DRER ++++ EL  ++ +E L  +I+ +
Sbjct: 76  PLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILV 123

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 76/203 (37%), Gaps = 66/203 (32%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
           ++L LGLDNAGKTTLL  L  + ++   PT                          R  W
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYW 65
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
           + YF   D +++++D++DR+RFEE                       T         + +
Sbjct: 66  RSYFENTDILIYVIDSADRKRFEE-----------------------TGQELTELLEEEK 102
Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
           L C+         PVLI  NK D   AA   EI +   L+             +  R  +
Sbjct: 103 LSCV---------PVLIFANKQDLLTAAPASEIAEGLNLH------------TIRDRVWQ 141
Query: 226 LFMCSVLMRQGYGDGFRWLANYI 248
           +  CS L  +G  DG  W+   +
Sbjct: 142 IQSCSALTGEGVQDGMNWVCKNV 164

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 57/222 (25%)
Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
           +++  GLDN+GKTT+++ +K  + +    T    +GY     + G++ F   D  G    
Sbjct: 19  QVVMCGLDNSGKTTIINQVKPAQSSSKHIT--ATVGYNVETFEKGRVAFTVFDMGGAKKF 76
Query: 83  LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
                              R +W+ Y+  +DA++F+VD+SD  R    KSE+Q +L    
Sbjct: 77  -------------------RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAML---- 113
Query: 143 LASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYF 202
                          + E+ + EL            P L   NK+D  GA +  E+ +  
Sbjct: 114 ---------------KHEDIRREL------PGGGRVPFLFFANKMDAAGAKTAAELVEIL 152
Query: 203 GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
            L  L           M   P  +F  + L   G  +GF WL
Sbjct: 153 DLTTL-----------MGDHPFVIFASNGLKGTGVHEGFSWL 183

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 24/137 (17%)
Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
           ++L LGLD AGKTT+L+ L+   +   +PT    +G+         L F   D  G+T++
Sbjct: 4   RILILGLDGAGKTTILYRLQVGEVVTTIPT----IGFNVETVTYKNLKFQVWDLGGQTSI 59
Query: 83  LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
                              R  W+ Y+   DA++++VD+ DR+R   SKSEL  +L +E 
Sbjct: 60  -------------------RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 100
Query: 143 LASSI-VFLVDTSDRER 158
           L  +I V   +  D E+
Sbjct: 101 LRKAILVVFANKQDMEQ 117

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 42/188 (22%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           ++L LGLD AGKTT+L+ L+   +   +PT                 I F V+T   +  
Sbjct: 4   RILILGLDGAGKTTILYRLQVGEVVTTIPT-----------------IGFNVETVTYKNL 46
Query: 128 EESKSEL----------QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS 177
           +    +L          +C  ++     +++++VD+ DR+R   SKSEL  +L +E L  
Sbjct: 47  KFQVWDLGGQTSIRPYWRCYYSN---TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRK 103
Query: 178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGY 237
             +++  NK D   A +  E+    GL  L              R  ++F  S     G 
Sbjct: 104 AILVVFANKQDMEQAMTPSEMANALGLPAL------------KDRKWQIFKTSATKGTGL 151
Query: 238 GDGFRWLA 245
            +   WL 
Sbjct: 152 DEAMEWLV 159

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
           K  ++L +GLD AGKTT+L+ LK   +   +PT+     V    +  +   V+ V   D+
Sbjct: 16  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDK 73
Query: 125 ER------FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178
            R      F+ ++               ++F+VD++DRER  E++ EL  +L ++ L   
Sbjct: 74  IRPLWRHYFQNTQG--------------LIFVVDSNDRERVNEAREELMRMLAEDELRDA 119
Query: 179 PVLILGNKIDKHGAASEEEIRQYFGLYGL 207
            +L+  NK D   A +  EI    GL+ L
Sbjct: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSL 148

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
           K  ++L +GLD AGKTT+L+ LK   +   +PT+     V    +  +   V+ V   D+
Sbjct: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDK 72
Query: 125 ER------FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178
            R      F+ ++               ++F+VD++DRER  E++ EL  +L ++ L   
Sbjct: 73  IRPLWRHYFQNTQG--------------LIFVVDSNDRERVNEAREELMRMLAEDELRDA 118
Query: 179 PVLILGNKIDKHGAASEEEIRQYFGLYGL 207
            +L+  NK D   A +  EI    GL+ L
Sbjct: 119 VLLVFANKQDLPNAMNAAEITDKLGLHSL 147

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 22/108 (20%)
Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTR 102
           K  ++L +GLD AGKTT+L+ LK   +   +PT+                         R
Sbjct: 16  KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIR 75
Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
            +WK YF     ++F+VD++DRER +E   ELQ +L  + L  +++ L
Sbjct: 76  PLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLL 123

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 22/109 (20%)
Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT----------------------LHPT 101
            K  ++L LGLD AGKTT+L+ LK  +    +PT                      L   
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKI 70
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
           R +W+ Y+     ++F+VD +DR+R +E++ EL  ++ D  +  +I+ +
Sbjct: 71  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 119

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 13/142 (9%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTL-HPTRRVWKDYFPAVDAIVFLVDTSDRE 125
           +L  +GL  +GKTT ++++   +  +  +PT+    R++ K      +  + L D   + 
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG-----NVTIKLWDIGGQP 78
Query: 126 RFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN 185
           RF  S  E  C        S+IV++VD +D+E+ E SK+EL  LL    L   PVL+LGN
Sbjct: 79  RFR-SMWERYC-----RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 186 KIDKHGAASEEEIRQYFGLYGL 207
           K D  GA  E+E+ +   L  +
Sbjct: 133 KRDLPGALDEKELIEKMNLSAI 154

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
            K  ++L +GLD AGKTT+L+ LK   +   +PT+       +  +  +   V+  D   
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQ--YCNISFTVW--DVGG 70
Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
           ++R         C          ++F+VD++DR R  E++  +Q +L ++ L +   L+ 
Sbjct: 71  QDRIRSLWRHYYCN------TEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVF 124
Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
            NK D   A S  EI +  GL+ +              RP  +        +G  +G  W
Sbjct: 125 ANKQDLPEAMSAAEITEKLGLHSIRN------------RPWFIQATCATSGEGLYEGLEW 172
Query: 244 LAN 246
           L+N
Sbjct: 173 LSN 175

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 28/121 (23%)
Query: 58  GYLGLW------TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL------------- 98
           G +G W       K  ++L +GLD AGKT++L+ LK   +   +PT+             
Sbjct: 3   GSMGSWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 99  ---------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVF 149
                       R +W+ Y+    AI+F+VD++DR+R  E++ EL  +L ++ + ++I+ 
Sbjct: 63  FTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILL 122
Query: 150 L 150
           +
Sbjct: 123 V 123

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 22/146 (15%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER- 126
           ++L +GLD AGKTT+L+ LK   +   +PT+     V    +  +   V+ V   D+ R 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDKIRP 59
Query: 127 -----FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
                F+ ++               ++F+VD++DRER  E++ EL  +L ++ L    +L
Sbjct: 60  LWRHYFQNTQG--------------LIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 105
Query: 182 ILGNKIDKHGAASEEEIRQYFGLYGL 207
           +  NK D   A +  EI    GL+ L
Sbjct: 106 VFANKQDLPNAMNAAEITDKLGLHSL 131

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 19  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAG 78
            K  ++L LGLD AGKTT+L+ LK   L Q V T+ P +G+         + F   D  G
Sbjct: 11  NKEMRILMLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGG 66
Query: 79  KTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLL 138
           +  +                   R +W+ Y+     ++F+VD +DR+R +E++ EL  ++
Sbjct: 67  QDKI-------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRII 107
Query: 139 TDESLASSIVFL 150
            D  +  +I+ +
Sbjct: 108 NDREMRDAIILI 119

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 19  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAG 78
            K  ++L LGLD AGKTT+L+ LK   L Q V T+ P +G+         + F   D  G
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGG 65
Query: 79  KTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLL 138
           +  +                   R +W+ Y+     ++F+VD +DR+R +E++ EL  ++
Sbjct: 66  QDKI-------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRII 106
Query: 139 TDESLASSIVFL 150
            D  +  +I+ +
Sbjct: 107 NDREMRDAIILI 118

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 22/105 (20%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPT----------------------LHPTRRVW 105
           ++L LGLD AGKTT+L+ LK  +    +PT                      L   R +W
Sbjct: 5   RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLW 64
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
           + Y+     ++F+VD +DR+R +E++ EL  ++ D  +  +I+ +
Sbjct: 65  RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 109

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
           K  ++L +GLD AGKTT+L+ LK   +   +PT+     V    +  +   V+ V   D+
Sbjct: 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDK 221
Query: 125 ER------FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC 178
            R      F+ ++               ++F+VD++DRER  E++ EL  +L ++ L   
Sbjct: 222 IRPLWRHYFQNTQG--------------LIFVVDSNDRERVNEAREELMRMLAEDELRDA 267
Query: 179 PVLILGNKIDKHGAASEEEIRQYFGLYGL 207
            +L+  NK D   A +  EI    GL+ L
Sbjct: 268 VLLVFANKQDLPNAMNAAEITDKLGLHSL 296

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 66  SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRE 125
           S ++L +GLD AGKTT+L+ LK   +   +PT+     V    +  +   V+ V   D+ 
Sbjct: 2   SMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGLDKI 59
Query: 126 R------FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
           R      F+ ++               ++F+VD++DRER  E++ EL  +L ++ L    
Sbjct: 60  RPLWRHYFQNTQG--------------LIFVVDSNDRERVNEAREELMRMLAEDELRDAV 105
Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGL 207
           +L+  NK D   A +  EI    GL+ L
Sbjct: 106 LLVFANKQDLPNAMNAAEITDKLGLHSL 133

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 22/105 (20%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPT----------------------LHPTRRVW 105
           ++L LGLD AGKTT+L+ LK  +    +PT                      L   R +W
Sbjct: 4   RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLW 63
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
           + Y+     ++F+VD +DR+R +E++ EL  ++ D  +  +I+ +
Sbjct: 64  RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 108

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 23/128 (17%)
Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
           ++L LGLD AGKTT+L+ LK   L Q V T+ P +G+         + F   D  G+  +
Sbjct: 2   RILMLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKI 57
Query: 83  LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
                              R +W+ Y+     ++F+VD +DR+R +E++ EL  ++ D  
Sbjct: 58  -------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 98
Query: 143 LASSIVFL 150
           +  +I+ +
Sbjct: 99  MRDAIILI 106

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 23/128 (17%)
Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
           ++L LGLD AGKTT+L+ LK   L Q V T+ P +G+         + F   D  G+  +
Sbjct: 2   RILMLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKI 57
Query: 83  LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
                              R +W+ Y+     ++F+VD +DR+R +E++ EL  ++ D  
Sbjct: 58  -------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 98
Query: 143 LASSIVFL 150
           +  +I+ +
Sbjct: 99  MRDAIILI 106

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 70/208 (33%)
Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTR 102
           K  ++L +GLD AGKTT+L+ LK   +   +PT+                         R
Sbjct: 19  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 78
Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES 162
            +W+ YF     ++F+VD++DR+R  E++ EL  +L ++ L  ++               
Sbjct: 79  PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV--------------- 123
Query: 163 KSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGR 222
                            +L+  NK D   A +  EI    GL+ L              R
Sbjct: 124 -----------------LLVFANKQDLPNAMNAAEITDKLGLHSL--------------R 152
Query: 223 PIELFMCSVLMRQGYG--DGFRWLANYI 248
               ++ S     G G  +G  WL+N I
Sbjct: 153 QRHWYIQSTCATSGEGLYEGLDWLSNNI 180

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 23/128 (17%)
Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
           ++L LGLD AGKTT+L+ LK   L Q V T+ P +G+         + F   D  G+  +
Sbjct: 2   RILXLGLDAAGKTTILYKLK---LGQSVTTI-PTVGFNVETVTYKNVKFNVWDVGGQDKI 57
Query: 83  LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
                              R +W+ Y+     ++F+VD +DR+R +E++ EL  ++ D  
Sbjct: 58  -------------------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 98
Query: 143 LASSIVFL 150
              +I+ +
Sbjct: 99  XRDAIILI 106

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 13/148 (8%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTL-HPTRRVWKDYFPAVDAIVFLVDTSDRE 125
           +L  +GL  +GKTT ++++   + ++  +PT+    R+V K      +  + + D   + 
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKG-----NVTIKIWDIGGQP 78
Query: 126 RFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN 185
           RF  S  E  C        ++IV+++D +DRE+ E S++EL  LL    L   PVL+LGN
Sbjct: 79  RFR-SMWERYC-----RGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGN 132
Query: 186 KIDKHGAASEEEIRQYFGLYGLTTGKVA 213
           K D   A  E+++ +   L  +   ++ 
Sbjct: 133 KRDLPNALDEKQLIEKMNLSAIQDREIC 160

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 38/189 (20%)
Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
           ++  K++ +GLDNAGKTT+L+    + +    PT+             V+ IV      +
Sbjct: 19  SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----------VEEIVI-----N 63
Query: 124 RERF--------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175
             RF        E  +S      T+      ++ +VD++DRER   ++ EL  +L  E L
Sbjct: 64  NTRFLMWDIGGQESLRSSWNTYYTNTEF---VIVVVDSTDRERISVTREELYKMLAHEDL 120
Query: 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ 235
               +LI  NK D     +  EI Q+  L            + +      +  C  L  +
Sbjct: 121 RKAGLLIFANKQDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGE 168
Query: 236 GYGDGFRWL 244
           G   G  W+
Sbjct: 169 GLCQGLEWM 177

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 38/188 (20%)
Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
           +  K++ +GLDNAGKTT+L+    + +    PT+             V+ IV      + 
Sbjct: 15  QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----------VEEIVI-----NN 59
Query: 125 ERF--------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176
            RF        E  +S      T+      ++ +VD++DRER   ++ EL  +L  E L 
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEF---VIVVVDSTDRERISVTREELYKMLAHEDLR 116
Query: 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG 236
              +LI  NK D     +  EI Q+  L            + +      +  C  L  +G
Sbjct: 117 KAGLLIFANKQDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGEG 164
Query: 237 YGDGFRWL 244
              G  W+
Sbjct: 165 LCQGLEWM 172

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 38/188 (20%)
Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
           +  K++ +GLDNAGKTT+L+    + +    PT+             V+ IV      + 
Sbjct: 15  QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----------VEEIVI-----NN 59
Query: 125 ERF--------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA 176
            RF        E  +S      T+      ++ +VD++DRER   ++ EL  +L  E L 
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEF---VIVVVDSTDRERISVTREELYKMLAHEDLR 116
Query: 177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG 236
              +LI  NK D     +  EI Q+  L            + +      +  C  L  +G
Sbjct: 117 KAGLLIFANKQDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGEG 164
Query: 237 YGDGFRWL 244
              G  W+
Sbjct: 165 LCQGLEWM 172

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 38/185 (20%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           K++ +GLDNAGKTT+L+    + +    PT+             V+ IV      +  RF
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----------VEEIVI-----NNTRF 68
Query: 128 --------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP 179
                   E  +S      T+      ++ +VD++DRER   ++ EL  +L  E L    
Sbjct: 69  LMWDIGGQESLRSSWNTYYTNTEF---VIVVVDSTDRERISVTREELYKMLAHEDLRKAG 125
Query: 180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD 239
           +LI  NK D     +  EI Q+  L            + +      +  C  L  +G   
Sbjct: 126 LLIFANKQDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGEGLCQ 173
Query: 240 GFRWL 244
           G  W+
Sbjct: 174 GLEWM 178

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 70/207 (33%)
Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPT 101
            K  ++L +GLD AGKTT+L+ LK   +   +PT+                         
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE 161
           R +W+ Y+   + ++F++D++DR R  E++  +Q +L ++ L +++              
Sbjct: 75  RSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV-------------- 120
Query: 162 SKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG 221
                              L+  NK D   A S  EI +  GL+ +              
Sbjct: 121 ------------------WLVFANKQDLPEAMSAAEITEKLGLHSIRN------------ 150
Query: 222 RPIELFMCSVLMRQGYG--DGFRWLAN 246
           RP   F+ S     G G  +G  WL+N
Sbjct: 151 RP--WFIQSTCATSGEGLYEGLEWLSN 175

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 25/122 (20%)
Query: 30  DNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGL-DNAGKTTLLHMLKD 88
           DNAGKTT+L         + V T+ P LG+  + T   +   L + D  G+ +L      
Sbjct: 27  DNAGKTTILKKFN----GEDVDTISPTLGF-NIKTLEHRGFKLNIWDVGGQKSL------ 75
Query: 89  DRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIV 148
                        R  W++YF + D ++++VD++DR+R ++ + ELQ LL +E LA + +
Sbjct: 76  -------------RSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATL 122
Query: 149 FL 150
            +
Sbjct: 123 LI 124

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 66/205 (32%)
Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPT 101
            K  ++L +GLD AGKTT+L+ LK   +   +PT+                         
Sbjct: 15  NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE 161
           R +W+ Y+   + ++F+VD++DR R  E++  +Q +L ++ L ++               
Sbjct: 75  RSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNA--------------- 119
Query: 162 SKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG 221
                              L+  NK D   A S  EI +  GL+ +              
Sbjct: 120 -----------------AWLVFANKQDLPEAMSAAEITEKLGLHSI------------RN 150
Query: 222 RPIELFMCSVLMRQGYGDGFRWLAN 246
           RP  +        +G  +G  WL+N
Sbjct: 151 RPWFIQATCATSGEGLYEGLEWLSN 175

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 66/201 (32%)
Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
           ++L +GLD AGKTT+L+ LK   +   +PT+                         R +W
Sbjct: 2   RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLW 61
Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
           + Y+   + ++F+VD++DR R  E++  +Q +L ++ L ++                   
Sbjct: 62  RHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNA------------------- 102
Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
                          L+  NK D   A S  EI +  GL+ +              RP  
Sbjct: 103 -------------AWLVFANKQDLPEAMSAAEITEKLGLHSI------------RNRPWF 137
Query: 226 LFMCSVLMRQGYGDGFRWLAN 246
           +        +G  +G  WL+N
Sbjct: 138 IQATCATSGEGLYEGLEWLSN 158

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 86/230 (37%), Gaps = 63/230 (27%)
Query: 19  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAG 78
           +K   +L LGLDN+GKTT+++ LK    AQ    L P +G+     KS  L F   D +G
Sbjct: 19  SKEVHVLCLGLDNSGKTTIINKLKPSN-AQSQNIL-PTIGFSIEKFKSSSLSFTVFDMSG 76
Query: 79  KTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLL 138
           +                      R +W+ Y+    AI+F++D+SDR R   +K EL  LL
Sbjct: 77  QGRY-------------------RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLL 117
Query: 139 TDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEI 198
               +    +                              P+L   NK+D   A +  ++
Sbjct: 118 NHPDIKHRRI------------------------------PILFFANKMDLRDAVTSVKV 147
Query: 199 RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
            Q   L              +  +P  +     +  +G  +G  WL + I
Sbjct: 148 SQLLCL------------ENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 22/91 (24%)
Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT----------------------LHPT 101
           T+  ++L LGLD AGKTT+L+ L+   +   +PT                      L   
Sbjct: 5   TREXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 64
Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKS 132
           R  W+ Y+   DA++++VD+ DR+R   SKS
Sbjct: 65  RPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 27/162 (16%)
Query: 58  GYLGLWTKSGK-------------LLFLGLDNAGKTTLLHMLK--DDRLAQPVPTLHPTR 102
           G++G W  S K             +L LGLDNAGKT++L+ L   D     P   ++   
Sbjct: 1   GHMGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLET 60
Query: 103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES 162
             +K+       I F  +  D       +   +C  +D     +++++VD++DR+R   +
Sbjct: 61  LQYKN-------ISF--EVWDLGGQTGVRPYWRCYFSD---TDAVIYVVDSTDRDRMGVA 108
Query: 163 KSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
           K EL  LL ++ L    +LI  NK D   AASE EI +  G+
Sbjct: 109 KHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGV 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-66
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	5e-64
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-42
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-40
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-40
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-39
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-38
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-36
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-36
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	7e-34
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-33
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-33
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	6e-33
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-30
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-30
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-26
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-25
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-24
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	6e-22
3llu_A	196	RAS-related GTP-binding protein C; structural geno	6e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	7e-09
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	2e-07
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	6e-06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	3e-05
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	7e-05
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-04
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-04

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  204 bits (520), Expect = 1e-66
 Identities = 116/246 (47%), Positives = 142/246 (57%), Gaps = 55/246 (22%)

Query: 4   IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLW 63
           I+  F+ VL +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHP    L   
Sbjct: 8   IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL--- 64

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
                + F   D  G                       RRVWK+Y PA++ IVFLVD +D
Sbjct: 65  -TIAGMTFTTFDLGGHIQA-------------------RRVWKNYLPAINGIVFLVDCAD 104

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
            ER  ESK EL  L+TDE++A+                                 P+LIL
Sbjct: 105 HERLLESKEELDSLMTDETIAN--------------------------------VPILIL 132

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKID+  A SEE +R+ FGLYG TTGK +    E++ RP+E+FMCSVL RQGYG+GFRW
Sbjct: 133 GNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRW 192

Query: 244 LANYID 249
           +A YID
Sbjct: 193 MAQYID 198

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  197 bits (502), Expect = 5e-64
 Identities = 101/248 (40%), Positives = 120/248 (48%), Gaps = 60/248 (24%)

Query: 1   MFQIWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYL 60
            + I+ WF  VL  LGLW K GKLLFLGLDNAGKTTLLHMLK+DRLA   PT HP    L
Sbjct: 3   GWDIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL 62

Query: 61  GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVD 120
                 G + F   D  G                       RR+WKDYFP V+ IVFLVD
Sbjct: 63  ----AIGNIKFTTFDLGGHIQA-------------------RRLWKDYFPEVNGIVFLVD 99

Query: 121 TSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV 180
            +D ERF+E++ EL  L     L                                   P 
Sbjct: 100 AADPERFDEARVELDALFNIAELKD--------------------------------VPF 127

Query: 181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG 240
           +ILGNKID   A SE E+R   GL   T  +          RP+E+FMCSV+MR GY + 
Sbjct: 128 VILGNKIDAPNAVSEAELRSALGLLNTTGSQ-----RIEGQRPVEVFMCSVVMRNGYLEA 182

Query: 241 FRWLANYI 248
           F+WL+ YI
Sbjct: 183 FQWLSQYI 190

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  141 bits (358), Expect = 3e-42
 Identities = 55/218 (25%), Positives = 81/218 (37%), Gaps = 67/218 (30%)

Query: 53  LHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT----------- 101
           L   LG L    +  ++L LGLDNAGKT++L+ L    +   VPT+              
Sbjct: 10  LKQTLGLL-PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISF 68

Query: 102 -----------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
                      R  W+ YF   DA++++VD++DR+R   +K EL  LL ++ L       
Sbjct: 69  EVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRK----- 123

Query: 151 VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTG 210
                                        +LI  NK D   AASE EI +  G+      
Sbjct: 124 ---------------------------SLLLIFANKQDLPDAASEAEIAEQLGV------ 150

Query: 211 KVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
                 S +  R   +   S     G  +G  WL   +
Sbjct: 151 ------SSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  136 bits (345), Expect = 2e-40
 Identities = 43/218 (19%), Positives = 74/218 (33%), Gaps = 66/218 (30%)

Query: 53  LHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL-------------- 98
            H   G +   ++  K++ +GLDNAGKTT+L+    + +    PT+              
Sbjct: 8   HHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRF 67

Query: 99  --------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
                      R  W  Y+   + ++ +VD++DR                          
Sbjct: 68  LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR-------------------------- 101

Query: 151 VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTG 210
                 ER   ++ EL  +L  E L    +LI  NK D     +  EI Q+  L      
Sbjct: 102 ------ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL------ 149

Query: 211 KVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
                 + +      +  C  L  +G   G  W+ + +
Sbjct: 150 ------TSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  135 bits (343), Expect = 4e-40
 Identities = 47/220 (21%), Positives = 79/220 (35%), Gaps = 66/220 (30%)

Query: 53  LHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLK--DDRLAQPVPTL------------ 98
            H   G +   +K   +L LGLDN+GKTT+++ LK  + +    +PT+            
Sbjct: 8   HHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSL 67

Query: 99  ----------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIV 148
                        R +W+ Y+    AI+F++D+SDR R   +K EL  LL    +     
Sbjct: 68  SFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHR-- 125

Query: 149 FLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLT 208
                                         P+L   NK+D   A +  ++ Q   L    
Sbjct: 126 ----------------------------RIPILFFANKMDLRDAVTSVKVSQLLCL---- 153

Query: 209 TGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
                     +  +P  +     +  +G  +G  WL + I
Sbjct: 154 --------ENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  133 bits (338), Expect = 1e-39
 Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 66/209 (31%)

Query: 62  LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------H 99
             T+  ++L LGLD AGKTT+L+ L+   +   +PT+                       
Sbjct: 3   HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLT 62

Query: 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF 159
             R  W+ Y+   DA++++VD+ DR+R   SKSEL  +L +E L                
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRK-------------- 108

Query: 160 EESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEM 219
                               +++  NK D   A +  E+    GL              +
Sbjct: 109 ------------------AILVVFANKQDMEQAMTSSEMANSLGL------------PAL 138

Query: 220 SGRPIELFMCSVLMRQGYGDGFRWLANYI 248
             R  ++F  S     G  +   WL   +
Sbjct: 139 KDRKWQIFKTSATKGTGLDEAMEWLVETL 167

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  131 bits (331), Expect = 2e-38
 Identities = 47/219 (21%), Positives = 78/219 (35%), Gaps = 66/219 (30%)

Query: 52  TLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL------------- 98
               +   L    K  ++L LGLD AGKTT+L+ L+   +    PT+             
Sbjct: 4   IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLK 63

Query: 99  ---------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVF 149
                       R  W+ Y+    A++F+VD++D+                         
Sbjct: 64  LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDK------------------------- 98

Query: 150 LVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTT 209
                  +R   +  EL  +L +E L    +L+  NK D+ GA S  E+ +   L     
Sbjct: 99  -------DRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNL----- 146

Query: 210 GKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
                   E+  R   +   S +  +G  +G  WL + I
Sbjct: 147 -------VELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  126 bits (319), Expect = 1e-36
 Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 66/209 (31%)

Query: 62  LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------H 99
              +  K++ +GLDNAGKTT+L+    + +    PT+                       
Sbjct: 12  FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 71

Query: 100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERF 159
             R  W  Y+   + ++ +VD++DR                                ER 
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDR--------------------------------ERI 99

Query: 160 EESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEM 219
             ++ EL  +L  E L    +LI  NK D     +  EI Q+  L            + +
Sbjct: 100 SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL------------TSI 147

Query: 220 SGRPIELFMCSVLMRQGYGDGFRWLANYI 248
                 +  C  L  +G   G  W+ + +
Sbjct: 148 KDHQWHIQACCALTGEGLCQGLEWMMSRL 176

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  126 bits (318), Expect = 2e-36
 Identities = 55/218 (25%), Positives = 81/218 (37%), Gaps = 66/218 (30%)

Query: 53  LHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL-------------- 98
           L  +        +  ++L LGLDNAGKTTLL  L  + ++   PT               
Sbjct: 3   LSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62

Query: 99  --------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
                      R  W+ YF   D +++++D++DR                          
Sbjct: 63  NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADR-------------------------- 96

Query: 151 VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTG 210
                 +RFEE+  EL  LL +E L+  PVLI  NK D   AA   EI +   L      
Sbjct: 97  ------KRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL------ 144

Query: 211 KVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
                   +  R  ++  CS L  +G  DG  W+   +
Sbjct: 145 ------HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  118 bits (299), Expect = 7e-34
 Identities = 45/203 (22%), Positives = 73/203 (35%), Gaps = 66/203 (32%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HPTRRVW 105
           ++L +GLD AGKTT+L+ LK   +   +PT+                         R +W
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61

Query: 106 KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE 165
           + YF     ++F+VD++DR                                ER  E++ E
Sbjct: 62  RHYFQNTQGLIFVVDSNDR--------------------------------ERVNEAREE 89

Query: 166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE 225
           L  +L ++ L    +L+  NK D   A +  EI    GL              +  R   
Sbjct: 90  LMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL------------HSLRHRNWY 137

Query: 226 LFMCSVLMRQGYGDGFRWLANYI 248
           +         G  +G  WL+N +
Sbjct: 138 IQATCATSGDGLYEGLDWLSNQL 160

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  118 bits (297), Expect = 3e-33
 Identities = 52/215 (24%), Positives = 80/215 (37%), Gaps = 66/215 (30%)

Query: 56  ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------- 98
           IL  +    +  +LL LGLDNAGKTT+L     + +    PTL                 
Sbjct: 8   ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIW 67

Query: 99  -----HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDT 153
                   R  W++YF + D ++++VD++DR                             
Sbjct: 68  DVGGQKSLRSYWRNYFESTDGLIWVVDSADR----------------------------- 98

Query: 154 SDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVA 213
              +R ++ + ELQ LL +E LA   +LI  NK D  GA S   I++   L         
Sbjct: 99  ---QRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL--------- 146

Query: 214 TPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
                +      +  CS +  +    G  WL + I
Sbjct: 147 ---DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  118 bits (297), Expect = 4e-33
 Identities = 51/218 (23%), Positives = 76/218 (34%), Gaps = 77/218 (35%)

Query: 61  GLWTKSGK----LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT--------------- 101
           GL  +  K    L  +GL  +GKTT ++++      Q    + PT               
Sbjct: 13  GLVPRGSKEEMELTLVGLQYSGKTTFVNVIA---SGQFNEDMIPTVGFNMRKITKGNVTI 69

Query: 102 -----------RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFL 150
                      R +W+ Y   V AIV++VD +D+                          
Sbjct: 70  KLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQ-------------------------- 103

Query: 151 VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTG 210
                 E+ E SK+EL  LL    L   PVL+LGNK D  GA  E+E+ +   L      
Sbjct: 104 ------EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL------ 151

Query: 211 KVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
                 S +  R I  +  S   +       +WL  + 
Sbjct: 152 ------SAIQDREICCYSISCKEKDNIDITLQWLIQHS 183

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  117 bits (295), Expect = 6e-33
 Identities = 47/208 (22%), Positives = 74/208 (35%), Gaps = 66/208 (31%)

Query: 63  WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL----------------------HP 100
             K  ++L +GLD AGKTT+L+ LK   +   +PT+                        
Sbjct: 26  GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDK 85

Query: 101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFE 160
            R +W+ YF     ++F+VD++DR                                ER +
Sbjct: 86  IRPLWRHYFQNTQGLIFVVDSNDR--------------------------------ERVQ 113

Query: 161 ESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS 220
           ES  ELQ +L ++ L    +L+  NK D   A    E+    GL              + 
Sbjct: 114 ESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGL------------QHLR 161

Query: 221 GRPIELFMCSVLMRQGYGDGFRWLANYI 248
            R   +         G  DG  WL++ +
Sbjct: 162 SRTWYVQATCATQGTGLYDGLDWLSHEL 189

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  111 bits (279), Expect = 2e-30
 Identities = 36/212 (16%), Positives = 60/212 (28%), Gaps = 63/212 (29%)

Query: 3   QIWDWFTGVLGYLGLWTKSGK-----LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPIL 57
           +I  W   +   LG  +  G      ++  G  N+GKT+LL +L  D +   V +  P+ 
Sbjct: 25  KISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS 84

Query: 58  GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFP----AVD 113
                           +D  G   L                   R    DY       V 
Sbjct: 85  A-----ADYDGSGVTLVDFPGHVKL-------------------RYKLSDYLKTRAKFVK 120

Query: 114 AIVFLVD-TSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD 172
            ++F+VD T D ++   +   L  +L+                                 
Sbjct: 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITES----------------------------- 151

Query: 173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGL 204
                  +LI  NK +   A    +I+     
Sbjct: 152 SCENGIDILIACNKSELFTARPPSKIKDALES 183

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  111 bits (280), Expect = 2e-30
 Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 57/170 (33%)

Query: 59  YLGLWTKSGK--LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT--------------- 101
           ++G+  KS +  ++  G  N+GKT+LL +L  D +   V +  P                
Sbjct: 3   HMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDF 62

Query: 102 ------RRVWKDYFP----AVDAIVFLVD-TSDRERFEESKSELQCLLTDESLASSIVFL 150
                 R    DY       V  ++F+VD T D ++   +   L  +L+           
Sbjct: 63  PGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES------- 115

Query: 151 VDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQ 200
                                        +LI  NK +   A    +I+ 
Sbjct: 116 ----------------------SCENGIDILIACNKSELFTARPPSKIKD 143

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  103 bits (257), Expect = 4e-26
 Identities = 48/223 (21%), Positives = 76/223 (34%), Gaps = 66/223 (29%)

Query: 48  QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL--------- 98
            P     P         K  ++L +GLD AGKTT+L+ LK   +   +PT+         
Sbjct: 147 SPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 206

Query: 99  -------------HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLAS 145
                           R +W+ YF     ++F+VD++DR                     
Sbjct: 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR--------------------- 245

Query: 146 SIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLY 205
                      ER  E++ EL  +L ++ L    +L+  NK D   A +  EI    GL 
Sbjct: 246 -----------ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL- 293

Query: 206 GLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI 248
                        +  R   +         G  +G  WL+N +
Sbjct: 294 -----------HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 96.7 bits (241), Expect = 1e-24
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 13/146 (8%)

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
           +    +LF+GL ++GKT L   L   +      ++  +  ++K         + L+D   
Sbjct: 5   SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYK-VNNNRGNSLTLIDLPG 63

Query: 124 RERFEESKSELQCLLTDESLASS--IVFLVDTSDRERF-EESKSELQCLLTDESLA--SC 178
            E        L+  L D   +S+  +VF+VD++  +R  ++    L  +L D      S 
Sbjct: 64  HES-------LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSP 116

Query: 179 PVLILGNKIDKHGAASEEEIRQYFGL 204
            +LI  NK D   A S + I+Q    
Sbjct: 117 SLLIACNKQDIAMAKSAKLIQQQLEK 142

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 89.0 bits (221), Expect = 6e-22
 Identities = 33/241 (13%), Positives = 60/241 (24%), Gaps = 53/241 (21%)

Query: 10  GVLGYLGLWTK--SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSG 67
           G +  +    +  + K+++ G   +GKTT L  +           +  +       T   
Sbjct: 1   GSMSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATE-DERTLFF 59

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
             L L +           L        VP         K     VD IVF+ D++     
Sbjct: 60  DFLPLDIGEVKGFKTRFHLYT------VPGQVFYNASRKLILRGVDGIVFVADSAPNRLR 113

Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
                                        E     +  L       +L   P++I  NK 
Sbjct: 114 AN--------------------------AESMRNMRENLA--EYGLTLDDVPIVIQVNKR 145

Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
           D   A   E +R                          +        +G  +  + ++  
Sbjct: 146 DLPDALPVEMVRAVVDP----------------EGKFPVLEAVATEGKGVFETLKEVSRL 189

Query: 248 I 248
           +
Sbjct: 190 V 190

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 72.7 bits (178), Expect = 6e-16
 Identities = 17/134 (12%), Positives = 52/134 (38%), Gaps = 4/134 (2%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV-DTSDRER 126
           ++L +GL  +GK+++  ++           L  T +++KD       + F + D   +  
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           F +   + + +        ++++++D  D      ++  +      +        +  +K
Sbjct: 82  FFDPTFDYEMIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138

Query: 187 IDKHGAASEEEIRQ 200
           +D      + E ++
Sbjct: 139 VDGLSDDHKIETQR 152

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 72.7 bits (178), Expect = 3e-15
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 3/135 (2%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV-DTSDRER 126
           KLL +G   +GK+++  ++  +  A     L  T  V   +   +  +   + D   ++ 
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS-CPVLILGN 185
           F E+    Q     +     ++ + D    E  ++ +   + L      +    + +L +
Sbjct: 65  FMENYFTKQKDHIFQM-VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123

Query: 186 KIDKHGAASEEEIRQ 200
           K+D       EE+ Q
Sbjct: 124 KMDLVQLDKREELFQ 138

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 1e-10
 Identities = 33/237 (13%), Positives = 77/237 (32%), Gaps = 53/237 (22%)

Query: 20  KSGKLLFL-GLDNAGKTTL-LHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNA 77
           +  K + + G+  +GKT + L +    ++   +     I      W              
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--FKIF-----WLNLKNCN------- 193

Query: 78  GKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCL 137
                      + + + +  L    ++  ++    D       ++ + R    ++EL+ L
Sbjct: 194 ---------SPETVLEMLQKLL--YQIDPNWTSRSDH-----SSNIKLRIHSIQAELRRL 237

Query: 138 LTDESLASSIVFLVDTSDRERFEESKSELQC--LLT--DESLASCPVLILGNKIDKH--- 190
           L  +   + ++ L++  + + +      L C  LLT   + +       L      H   
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWN--AFNLSCKILLTTRFKQVTD----FLSAATTTHISL 291

Query: 191 ----GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
                  + +E++     Y L       PR  ++  P  L + +  +R G      W
Sbjct: 292 DHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TW 344

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 54.3 bits (130), Expect = 7e-09
 Identities = 16/132 (12%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 69  LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE 128
           +L +G+   GK+++  ++  +        L  T     ++F  +  +  +++   +  + 
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLA-VMELPGQLNYF 60

Query: 129 ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID 188
           E   + + L        ++V+++D+ D      +   +      +   S  + +L +K+D
Sbjct: 61  EPSYDSERLFKS---VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117

Query: 189 KHGAASEEEIRQ 200
                 + + ++
Sbjct: 118 GLSEDFKVDAQR 129

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 13/148 (8%), Positives = 30/148 (20%), Gaps = 43/148 (29%)

Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE 161
               +     VD  +++ +    +R E        +   +                    
Sbjct: 116 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDP------------------- 156

Query: 162 SKSELQCLLTDESLASCPVLILG-NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS 220
                         +  P+L+L               +     L  L             
Sbjct: 157 ----------AFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN------------ 194

Query: 221 GRPIELFMCSVLMRQGYGDGFRWLANYI 248
             P  +         G+ +G  W+   +
Sbjct: 195 -HPWLVQDTEAETLTGFLNGIEWILEEV 221

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 45.5 bits (107), Expect = 6e-06
 Identities = 13/146 (8%), Positives = 29/146 (19%), Gaps = 43/146 (29%)

Query: 102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE 161
               +     VD  +++ +    +R E        +   +                    
Sbjct: 201 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDP------------------- 241

Query: 162 SKSELQCLLTDESLASCPVLILG-NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS 220
                         +  P+L+L               +     L  L             
Sbjct: 242 ----------AFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN------------ 279

Query: 221 GRPIELFMCSVLMRQGYGDGFRWLAN 246
             P  +         G+ +G  W+  
Sbjct: 280 -HPWLVQDTEAETLTGFLNGIEWILE 304

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 13/139 (9%)

Query: 68  KLLFLGLDNAGKTTLLHML----KDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
            +   G   +GK++ ++ L     ++  A     +  T        P +  +VF     D
Sbjct: 71  NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW----D 126

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
                 +       L          F++ ++   RF+++  ++   ++           +
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISAT--RFKKNDIDIAKAISMM---KKEFYFV 181

Query: 184 GNKIDKHGAASEEEIRQYF 202
             K+D       +   Q F
Sbjct: 182 RTKVDSDITNEADGEPQTF 200

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 18/150 (12%)

Query: 69  LLFLGLDNAGKTTLLHML---KDDRLAQPVPTLHPTRRVWK-DYFPAVDAIVFLVDTS-- 122
           ++  G  N GK+TLL  L   K +  + P  T       ++  YF        ++DT   
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQ-----IIDTPGL 224

Query: 123 -DRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE---SLASC 178
            DR   E ++ E Q +L    L + I+++ D S+   F     E Q  L +E        
Sbjct: 225 LDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPL---EEQIHLFEEVHGEFKDL 281

Query: 179 PVLILGNKIDKHGAASEEEIRQYFGLYGLT 208
           P L++ NKID     + + + ++    GL 
Sbjct: 282 PFLVVINKIDVADEENIKRLEKFVKEKGLN 311

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 23/148 (15%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH------PTRRVWKDYFPAVDAIVFLV-D 120
           KL+ +G   +GKTTLL  L   + +                 +        D +V  V D
Sbjct: 4   KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRD-LVLNVWD 62

Query: 121 TSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD-ESLAS-C 178
            + RE F    S     +T     +  + + D S  +   ++   ++  L + ++ AS  
Sbjct: 63  FAGREEF---YSTHPHFMTQ---RALYLAVYDLSKGQAEVDA---MKPWLFNIKARASSS 113

Query: 179 PVLILGNKID----KHGAASEEEIRQYF 202
           PV+++G  +D    K   A   +I +  
Sbjct: 114 PVILVGTHLDVSDEKQRKACMSKITKEL 141

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 30/183 (16%), Positives = 54/183 (29%), Gaps = 51/183 (27%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
           K+  +G   AGKT+LL  L  +                            GL+   K   
Sbjct: 43  KVHLIGDGMAGKTSLLKQLIGETFDPKESQ------------------THGLNVVTKQAP 84

Query: 83  LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
                ++         H     W              D   +E      +  Q  +T  S
Sbjct: 85  NIKGLENDDELKECLFH----FW--------------DFGGQEIM---HASHQFFMTRSS 123

Query: 143 LASSIVFLVDTSDRERFEESKSELQCLLTDESLAS-CPVLILGNKIDKHG--AASEEEIR 199
           +   ++      D          L+ +   E      PV+++ NKID++      +++I 
Sbjct: 124 VY-MLLL-----DSRTDSNKHYWLRHI---EKYGGKSPVIVVMNKIDENPSYNIEQKKIN 174

Query: 200 QYF 202
           + F
Sbjct: 175 ERF 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.98
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.96
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.96
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.96
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.95
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.95
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.95
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.95
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.95
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.95
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.95
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.95
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.95
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.95
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.95
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.95
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.95
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.95
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.95
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.95
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.95
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.95
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.95
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.95
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.95
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.95
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.95
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.95
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.95
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.95
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.95
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.95
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.95
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.95
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.95
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.95
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.94
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.94
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.94
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.94
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.94
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.94
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.94
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.94
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.94
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.94
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.94
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.94
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.94
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.94
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.94
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.92
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.92
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.92
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.92
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.91
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.91
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.91
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.91
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.91
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.9
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.9
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.9
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.9
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.89
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.89
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.89
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.89
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.89
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.88
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.88
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.88
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.88
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.88
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.87
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.86
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.85
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.85
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.85
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.85
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.84
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.84
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.84
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.83
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.83
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.83
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.83
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.82
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.82
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.82
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.82
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.82
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.82
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.82
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.82
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.81
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.81
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.81
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.8
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.79
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.79
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.78
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.78
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.78
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.78
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.78
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.77
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.76
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.76
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.75
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.75
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.73
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.73
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.73
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.73
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.72
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.71
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.7
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.7
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.7
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.7
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.69
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.69
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.68
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.68
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.68
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.67
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.67
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.66
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.65
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.64
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.64
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.64
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.61
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.59
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.58
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.57
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.57
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.55
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.54
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.54
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.54
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.53
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.52
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.52
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.47
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.46
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.41
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.27
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.26
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.2
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.12
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.99
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.98
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.97
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.97
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.94
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.94
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.9
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.88
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.83
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.81
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.73
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.71
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.61
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.51
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.41
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.4
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.39
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.35
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.35
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.27
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.26
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.12
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.11
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.08
2xxa_A	433	Signal recognition particle protein; protein trans	98.08
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.07
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.06
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.03
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.88
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.82
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.82
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.76
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.73
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.71
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.7
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.59
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.59
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.57
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.56
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.55
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.55
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.55
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.53
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.5
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.5
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.5
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.49
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.49
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.48
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.48
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.47
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.47
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.45
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.45
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.44
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.42
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.41
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.41
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.4
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.39
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.39
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.39
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.39
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.38
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.38
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.38
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.38
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.37
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.37
1g6h_A	257	High-affinity branched-chain amino acid transport	97.37
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.37
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.37
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.36
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.36
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.35
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.35
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.35
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.35
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.34
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.34
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.34
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.33
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.33
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.33
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.32
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.32
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.32
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.3
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.3
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.3
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.3
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.29
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.28
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.28
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.28
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.28
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.28
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.27
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.27
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.26
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.26
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.26
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.26
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.26
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.25
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.22
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.22
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.22
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.22
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.21
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.2
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.2
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.2
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.2
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.19
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.18
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.18
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.18
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.18
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.17
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.16
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.16
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.15
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.15
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.15
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.14
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.14
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.14
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.14
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.13
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.13
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.13
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.12
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.12
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.12
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.12
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.11
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.1
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.1
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.1
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.1
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.09
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.09
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.09
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.09
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.09
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.09
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.08
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.07
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.05
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.04
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.04
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.04
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.03
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.03
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.02
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.02
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.01
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.01
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.99
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.98
1via_A	175	Shikimate kinase; structural genomics, transferase	96.98
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.97
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.97
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.96
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.95
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.95
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.94
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.93
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.93
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.93
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.93
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.92
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.92
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.89
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.87
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.87
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.86
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.86
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.86
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.85
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.85
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.85
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.84
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.84
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.84
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.83
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.83
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.82
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.81
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.81
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.8
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.78
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.78
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.78
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.76
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.75
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.73
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.73
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.72
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.71
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.7
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.69
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.69
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.68
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.68
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.68
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.67
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.66
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.66
2og2_A	359	Putative signal recognition particle receptor; nuc	96.65
3end_A	307	Light-independent protochlorophyllide reductase ir	96.63
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.62
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.62
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.61
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.59
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.59
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.56
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.56
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.56
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.55
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.55
3bos_A	242	Putative DNA replication factor; P-loop containing	96.54
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.53
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.53
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	96.52
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.51
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.51
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.5
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.48
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.48
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.47
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.47
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.46
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.45
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.45
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.44
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.41
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.41
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.4
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.37
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.36
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.32
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.32
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	96.31
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.3
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.29
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.29
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.28
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.23
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.22
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.21
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.2
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.2
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.2
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	96.2
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.17
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.16
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.13
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.11
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.11
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.11
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.11
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.1
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.08
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.08
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.07
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.07
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.06
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.05
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.02
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.98
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.98
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.97
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.96
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.95
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.94
2qgz_A	308	Helicase loader, putative primosome component; str	95.94
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.93
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.9
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.89
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.86
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.86
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.85
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.82
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.82
3uc9_A	233	Increased recombination centers protein 6; rossman	95.79

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=100.00  E-value=2.6e-32  Score=205.38  Aligned_cols=194  Identities=56%  Similarity=0.909  Sum_probs=136.2

Q ss_pred             CchHhHH----HHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCC
Q psy871            1 MFQIWDW----FTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDN   76 (249)
Q Consensus         1 ~~~~~~~----~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~   76 (249)
                      |+-++.|    +...+..+++..++.+|+++|++|||||||+++|.+..+..+.||++.....+                
T Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~----------------   64 (198)
T 1f6b_A            1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL----------------   64 (198)
T ss_dssp             ------------CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEE----------------
T ss_pred             CcHHHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEE----------------
Confidence            4445666    77778888899999999999999999999999998876655455554332222                


Q ss_pred             CchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh
Q psy871           77 AGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR  156 (249)
Q Consensus        77 ~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~  156 (249)
                                                       ...+..+.+|||||++.+...+.      .++..+|++++|+|++++
T Consensus        65 ---------------------------------~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~D~~~~  105 (198)
T 1f6b_A           65 ---------------------------------TIAGMTFTTFDLGGHIQARRVWK------NYLPAINGIVFLVDCADH  105 (198)
T ss_dssp             ---------------------------------EETTEEEEEEEECC----CCGGG------GGGGGCSEEEEEEETTCG
T ss_pred             ---------------------------------EECCEEEEEEECCCcHhhHHHHH------HHHhcCCEEEEEEECCCH
Confidence                                             11125688999999988877666      667889999999999999


Q ss_pred             hhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc
Q psy871          157 ERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG  236 (249)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  236 (249)
                      .++.....++.+++......++|+++|+||+|+.+....+++.+.++......+.............+++++|||++|.|
T Consensus       106 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  185 (198)
T 1f6b_A          106 ERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQG  185 (198)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBS
T ss_pred             HHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCC
Confidence            99999888888887654456899999999999988777888888776543222211111111122457899999999999


Q ss_pred             hHHHHHHHhhhcC
Q psy871          237 YGDGFRWLANYID  249 (249)
Q Consensus       237 v~~l~~~l~~~i~  249 (249)
                      +++++++|.+.++
T Consensus       186 v~~l~~~l~~~l~  198 (198)
T 1f6b_A          186 YGEGFRWMAQYID  198 (198)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999998774

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.98  E-value=1.2e-31  Score=203.44  Aligned_cols=165  Identities=21%  Similarity=0.190  Sum_probs=127.7

Q ss_pred             cccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      .|-+++++||+|+|.+|||||||+++++.+.+. .+.||++.......                                
T Consensus         7 ~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~--------------------------------   54 (216)
T 4dkx_A            7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKT--------------------------------   54 (216)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEE--------------------------------
T ss_pred             CCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEE--------------------------------
Confidence            456788999999999999999999999988776 44566654332220                                


Q ss_pred             ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                                   ....+....+.+|||+|+++|..+..      .++..++++++|+|++++.+|..+..|+..+....
T Consensus        55 -------------~~~~~~~v~l~iwDtaGqe~~~~l~~------~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~  115 (216)
T 4dkx_A           55 -------------MYLEDRTIRLQLWDTAGLERFRSLIP------SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER  115 (216)
T ss_dssp             -------------EECSSCEEEEEEECCSCTTTCGGGHH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             -------------EEecceEEEEEEEECCCchhhhhHHH------HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc
Confidence                         11233445688999999999999888      77899999999999999999999998888876543


Q ss_pred             CCCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ..+.|+++|+||+|+.+  .+..++..++.+..+                 +++++|||++|.|++++|+.|++.|
T Consensus       116 -~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-----------------~~~~e~SAktg~nV~e~F~~i~~~i  174 (216)
T 4dkx_A          116 -GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-----------------VMFIETSAKAGYNVKQLFRRVAAAL  174 (216)
T ss_dssp             -TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred             -CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-----------------CeeEEEeCCCCcCHHHHHHHHHHHH
Confidence             36799999999999965  578889999888877                 7899999999999999999998765

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=9.9e-31  Score=195.48  Aligned_cols=185  Identities=49%  Similarity=0.782  Sum_probs=129.2

Q ss_pred             HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHH
Q psy871            4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLL   83 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~   83 (249)
                      ++.++.+.+..+++..++.+|+++|++|||||||+++|.+..+..+.||.+.....+                       
T Consensus         6 ~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~-----------------------   62 (190)
T 1m2o_B            6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL-----------------------   62 (190)
T ss_dssp             ------------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEE-----------------------
T ss_pred             HHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEE-----------------------
Confidence            455677778888899999999999999999999999999887765556655432222                       


Q ss_pred             HHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH
Q psy871           84 HMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK  163 (249)
Q Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~  163 (249)
                                                ...+..+.+|||||++.+.....      .++..+|++++|+|++++.++....
T Consensus        63 --------------------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~  110 (190)
T 1m2o_B           63 --------------------------AIGNIKFTTFDLGGHIQARRLWK------DYFPEVNGIVFLVDAADPERFDEAR  110 (190)
T ss_dssp             --------------------------EETTEEEEEEECCCSGGGTTSGG------GGCTTCCEEEEEEETTCGGGHHHHH
T ss_pred             --------------------------EECCEEEEEEECCCCHHHHHHHH------HHHhcCCEEEEEEECCChHHHHHHH
Confidence                                      11125688999999998877665      6678899999999999999999988


Q ss_pred             HHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871          164 SELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW  243 (249)
Q Consensus       164 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  243 (249)
                      .++.+++......+.|+++|+||+|+.+....+++.+.++... ..+...  .  .....+++++|||++|.|+++++++
T Consensus       111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~--~--~~~~~~~~~~~Sa~~g~gi~~l~~~  185 (190)
T 1m2o_B          111 VELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQR--I--EGQRPVEVFMCSVVMRNGYLEAFQW  185 (190)
T ss_dssp             HHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC-----C--CSSCCEEEEECBTTTTBSHHHHHHH
T ss_pred             HHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccc--c--cccceEEEEEeECCcCCCHHHHHHH
Confidence            8888887654457899999999999988777888877665432 111110  0  1123478999999999999999999


Q ss_pred             Hhhhc
Q psy871          244 LANYI  248 (249)
Q Consensus       244 l~~~i  248 (249)
                      |.+.|
T Consensus       186 l~~~l  190 (190)
T 1m2o_B          186 LSQYI  190 (190)
T ss_dssp             HHTTC
T ss_pred             HHhhC
Confidence            98865

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.3e-29  Score=187.51  Aligned_cols=165  Identities=25%  Similarity=0.429  Sum_probs=125.6

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +..++++|+++|++|||||||+++|+++.+....||.+.....+                                    
T Consensus        12 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~------------------------------------   55 (187)
T 1zj6_A           12 FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI------------------------------------   55 (187)
T ss_dssp             HTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEE------------------------------------
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEE------------------------------------
Confidence            34788999999999999999999999776654444444222221                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                                   ...+..+.+||+||++++.....      .++..+|++++|+|++++.++.....++.++.......
T Consensus        56 -------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~  116 (187)
T 1zj6_A           56 -------------VINNTRFLMWDIGGQESLRSSWN------TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR  116 (187)
T ss_dssp             -------------EETTEEEEEEECCC----CGGGH------HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGT
T ss_pred             -------------EECCEEEEEEECCCCHhHHHHHH------HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhC
Confidence                         11236789999999988877766      56788999999999999999999888888887654446


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.+....+++.+.+....            .....+++++|||++|.|+++++++|.+.+
T Consensus       117 ~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (187)
T 1zj6_A          117 KAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWHIQACCALTGEGLCQGLEWMMSRL  176 (187)
T ss_dssp             TCEEEEEEECTTSTTCCCHHHHHHHHTGGG------------CCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCcCCCCHHHHHHHhChhh------------hcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence            899999999999988767777776665431            112347899999999999999999998865

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=6.9e-29  Score=180.90  Aligned_cols=160  Identities=26%  Similarity=0.408  Sum_probs=125.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      +||+++|++|||||||+++|++..+....||++.....+                                         
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~-----------------------------------------   39 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV-----------------------------------------   39 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEE-----------------------------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEE-----------------------------------------
Confidence            489999999999999999999877665555555222111                                         


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                              ...+..+.+||+||++++.....      .++..+|++++|+|++++.++.....++..++......+.|++
T Consensus        40 --------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii  105 (164)
T 1r8s_A           40 --------EYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL  105 (164)
T ss_dssp             --------ECSSCEEEEEECCCCGGGHHHHH------HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE
T ss_pred             --------EECCEEEEEEEcCCChhhHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEE
Confidence                    11235689999999998877666      5678899999999999999999888888888765455689999


Q ss_pred             EEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       182 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+||+|+.+....+++.+......            .....+++++|||++|.|+++++++|.+.+
T Consensus       106 lv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A          106 VFANKQDLPNAMNAAEITDKLGLHS------------LRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             EEEECTTSTTCCCHHHHHHHTTGGG------------CSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             EEEECcCCcCCCCHHHHHHHhCccc------------ccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence            9999999987766666665544321            112347899999999999999999998865

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=2.8e-29  Score=186.14  Aligned_cols=164  Identities=30%  Similarity=0.465  Sum_probs=125.4

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      +.++++|+++|++|||||||+++|.+..+....||.+.....+                                     
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~-------------------------------------   55 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSV-------------------------------------   55 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEE-------------------------------------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEE-------------------------------------
Confidence            4678999999999999999999998765443333333111111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                                  ...+..+.+||+||++.+.....      .++..+|++++|+|++++.++.....++.+++......+
T Consensus        56 ------------~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  117 (181)
T 1fzq_A           56 ------------QSQGFKLNVWDIGGQRKIRPYWR------SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC  117 (181)
T ss_dssp             ------------EETTEEEEEEECSSCGGGHHHHH------HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTT
T ss_pred             ------------EECCEEEEEEECCCCHHHHHHHH------HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcC
Confidence                        11145788999999998877665      567889999999999999999988888888766545578


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+....+++.+.+....            .....+++++|||++|.|+++++++|.+.+
T Consensus       118 ~piilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (181)
T 1fzq_A          118 VPVLIFANKQDLLTAAPASEIAEGLNLHT------------IRDRVWQIQSCSALTGEGVQDGMNWVCKNV  176 (181)
T ss_dssp             CCEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             CCEEEEEECcCcccCCCHHHHHHHhCchh------------ccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence            99999999999988766666665544321            112347899999999999999999998865

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=2e-29  Score=188.73  Aligned_cols=164  Identities=27%  Similarity=0.390  Sum_probs=122.1

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+++++|+++|++|||||||+++|+++.+....||++.....                                      
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~--------------------------------------   67 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--------------------------------------   67 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEE--------------------------------------
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEE--------------------------------------
Confidence            467899999999999999999999876654333333311111                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                                 +...+..+.+||+||++++.....      .++..+|++++|+|++++.++.....++.+++......+
T Consensus        68 -----------~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~  130 (192)
T 2b6h_A           68 -----------VEYKNICFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRD  130 (192)
T ss_dssp             -----------EEETTEEEEEEECC-----CTTHH------HHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             -----------EEECCEEEEEEECCCCHhHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCC
Confidence                       112346789999999988877666      566889999999999999999988888888876554568


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+....+++.+......            .....+++++|||++|.|+++++++|.+.+
T Consensus       131 ~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i  189 (192)
T 2b6h_A          131 AVLLVFANKQDMPNAMPVSELTDKLGLQH------------LRSRTWYVQATCATQGTGLYDGLDWLSHEL  189 (192)
T ss_dssp             CEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCCCCHHHHHHHhCccc------------ccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence            99999999999987766666666554322            112347899999999999999999999876

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=1.3e-29  Score=189.25  Aligned_cols=163  Identities=29%  Similarity=0.410  Sum_probs=126.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +++++|+++|++|||||||+++|....+....||.+.....+                                      
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~--------------------------------------   61 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETL--------------------------------------   61 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEE--------------------------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEE--------------------------------------
Confidence            578999999999999999999998766554444443222111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                                 ...+..+.+|||||++++.....      .+++.+|++++|+|++++.++.....++.+++......+.
T Consensus        62 -----------~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  124 (189)
T 2x77_A           62 -----------QYKNISFEVWDLGGQTGVRPYWR------CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS  124 (189)
T ss_dssp             -----------EETTEEEEEEEECCSSSSCCCCS------SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC
T ss_pred             -----------EECCEEEEEEECCCCHhHHHHHH------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence                       11245789999999988776665      6678999999999999999999888888888765555689


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.+....+++.+......            .....+++++|||++|.|+++++++|.+.+
T Consensus       125 piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  182 (189)
T 2x77_A          125 LLLIFANKQDLPDAASEAEIAEQLGVSS------------IMNRTWTIVKSSSKTGDGLVEGMDWLVERL  182 (189)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCCCCHHHHHHHhChhh------------ccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence            9999999999988766666666554322            112346899999999999999999998765

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=9.5e-29  Score=181.34  Aligned_cols=163  Identities=26%  Similarity=0.403  Sum_probs=128.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .++++|+++|++|||||||+++|.+..+....||.+.....+                                      
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~--------------------------------------   46 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETV--------------------------------------   46 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEE--------------------------------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEE--------------------------------------
Confidence            457899999999999999999999887765555554322222                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                                 ......+.+||+||++.+.....      .++..+|++++|+|++++.++.....++..++......+.
T Consensus        47 -----------~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  109 (171)
T 1upt_A           47 -----------TYKNLKFQVWDLGGLTSIRPYWR------CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA  109 (171)
T ss_dssp             -----------EETTEEEEEEEECCCGGGGGGGG------GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC
T ss_pred             -----------EECCEEEEEEECCCChhhhHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCC
Confidence                       01145689999999988877666      6678999999999999999998888888888765445689


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.+....+++........            .....++++++||++|.|+++++++|.+.+
T Consensus       110 piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (171)
T 1upt_A          110 ILVVFANKQDMEQAMTSSEMANSLGLPA------------LKDRKWQIFKTSATKGTGLDEAMEWLVETL  167 (171)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHHTGGG------------CTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCCCCHHHHHHHhCchh------------ccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence            9999999999988766666666554322            112347899999999999999999998865

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=1e-28  Score=183.81  Aligned_cols=163  Identities=29%  Similarity=0.425  Sum_probs=127.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .++++|+++|++|||||||+++|++.......||.+.....+                                      
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~--------------------------------------   57 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTL--------------------------------------   57 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEE--------------------------------------
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEE--------------------------------------
Confidence            678999999999999999999999877445555554222221                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                                 ...+..+.+|||||++++.....      .+++.+|++++|+|++++.++.....++.+++......+.
T Consensus        58 -----------~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  120 (186)
T 1ksh_A           58 -----------EHRGFKLNIWDVGGQKSLRSYWR------NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA  120 (186)
T ss_dssp             -----------EETTEEEEEEEECCSHHHHTTGG------GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             -----------EECCEEEEEEECCCCHhHHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCC
Confidence                       11245789999999988877666      6778999999999999999999888888888765555689


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.++...+++.+.+....            .....++++++||++|.|+++++++|.+.+
T Consensus       121 piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  178 (186)
T 1ksh_A          121 TLLIFANKQDLPGALSCNAIQEALELDS------------IRSHHWRIQGCSAVTGEDLLPGIDWLLDDI  178 (186)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cEEEEEeCccCCCCCCHHHHHHHhChhh------------ccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            9999999999988767777666554321            112347899999999999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=5.8e-29  Score=184.45  Aligned_cols=166  Identities=25%  Similarity=0.418  Sum_probs=126.2

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      ....+.++|+++|++|||||||+++|++..+....||.+.....+                                   
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~-----------------------------------   60 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI-----------------------------------   60 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEE-----------------------------------
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEE-----------------------------------
Confidence            445678899999999999999999999876644444444222111                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                    ...+..+.+||+||++++.....      .++..+|++++|+|++++.++..+..++..++.....
T Consensus        61 --------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~  120 (181)
T 2h17_A           61 --------------VINNTRFLMWDIGGQESLRSSWN------TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL  120 (181)
T ss_dssp             --------------EETTEEEEEEEESSSGGGTCGGG------GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGG
T ss_pred             --------------EECCEEEEEEECCCCHhHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh
Confidence                          11236789999999988877766      6678899999999999999999888888888765445


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.|+++|+||+|+.+....+++.+.+....            .....+++++|||++|.|+++++++|.+.+
T Consensus       121 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l  181 (181)
T 2h17_A          121 RKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWHIQACCALTGEGLCQGLEWMMSRL  181 (181)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred             CCCeEEEEEECCCcccCCCHHHHHHHhCccc------------ccCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence            7899999999999988767777777664322            112347899999999999999999998764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.96  E-value=1.5e-28  Score=183.31  Aligned_cols=166  Identities=28%  Similarity=0.393  Sum_probs=127.7

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      ...+++++|+|+|++|||||||+++|++..+. ...||.+.....+                                  
T Consensus        17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----------------------------------   62 (188)
T 1zd9_A           17 RGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----------------------------------   62 (188)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----------------------------------
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----------------------------------
Confidence            34577899999999999999999999987765 3344444221111                                  


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                                     ......+.+||+||++++.....      .++..+|++++|+|++++.++..+..++..++....
T Consensus        63 ---------------~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~  121 (188)
T 1zd9_A           63 ---------------TKGNVTIKLWDIGGQPRFRSMWE------RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ  121 (188)
T ss_dssp             ---------------EETTEEEEEEEECCSHHHHTTHH------HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG
T ss_pred             ---------------EeCCEEEEEEECCCCHhHHHHHH------HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc
Confidence                           12245789999999998877766      566889999999999999999998888888876544


Q ss_pred             CCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..+.|+++|+||+|+......+++.+......            .....+++++|||++|.|+++++++|.+.+
T Consensus       122 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  183 (188)
T 1zd9_A          122 LQGIPVLVLGNKRDLPGALDEKELIEKMNLSA------------IQDREICCYSISCKEKDNIDITLQWLIQHS  183 (188)
T ss_dssp             GTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             cCCCCEEEEEECCCCccCCCHHHHHHHhChhh------------hccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999987666666655544321            112347899999999999999999999876

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=5.6e-29  Score=184.66  Aligned_cols=163  Identities=26%  Similarity=0.432  Sum_probs=123.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +++++|+++|++|||||||+++|+++.+....||++.....+                                      
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~--------------------------------------   57 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL--------------------------------------   57 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEE--------------------------------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEE--------------------------------------
Confidence            788999999999999999999998765544444443221111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                                 ...+..+.+||+||++++.....      .++..+|++++|+|++++.++.....++..++......+.
T Consensus        58 -----------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  120 (183)
T 1moz_A           58 -----------SYKNLKLNVWDLGGQTSIRPYWR------CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA  120 (183)
T ss_dssp             -----------EETTEEEEEEEEC----CCTTGG------GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSC
T ss_pred             -----------EECCEEEEEEECCCCHhHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCC
Confidence                       11236789999999988777665      6678899999999999999999888888888765445789


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.+....+++.+.+....            .....+++++|||++|.|+++++++|.+.+
T Consensus       121 piilv~nK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  178 (183)
T 1moz_A          121 ALLVFANKQDQPGALSASEVSKELNLVE------------LKDRSWSIVASSAIKGEGITEGLDWLIDVI  178 (183)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHTTTTT------------CCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCCCCHHHHHHHhCccc------------ccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence            9999999999988767777776655332            122347899999999999999999998765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.96  E-value=1.1e-28  Score=180.14  Aligned_cols=159  Identities=16%  Similarity=0.171  Sum_probs=106.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .+||+++|++|||||||+++|.+.......++.+.....                                         
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-----------------------------------------   40 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR-----------------------------------------   40 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE-----------------------------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-----------------------------------------
Confidence            579999999999999999999866544333332221110                                         


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ...+.+....+.+||++|++.+.....      .++..+|++++|+|++++.++..+..++..+.......++|+
T Consensus        41 -----~~~~~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~  109 (166)
T 3q72_A           41 -----SIVVDGEEASLMVYDIWEQDGGRWLPG------HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI  109 (166)
T ss_dssp             -----EEEETTEEEEEEEEECC---------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCE
T ss_pred             -----EEEECCEEEEEEEEECCCCccchhhhh------hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence                 011223345688999999998877777      667889999999999999999999888888876555568999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+.+  ....++...+.....                 .+++++||++|.|+++++++|.+.+
T Consensus       110 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  162 (166)
T 3q72_A          110 ILVGNKSDLVRSREVSVDEGRACAVVFD-----------------CKFIETSAALHHNVQALFEGVVRQI  162 (166)
T ss_dssp             EEEEECTTCCSSCCSCHHHHHHHHHHTT-----------------CEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             EEEEeccccccccccCHHHHHHHHHHhC-----------------CcEEEeccCCCCCHHHHHHHHHHHH
Confidence            99999999975  455666666666655                 7899999999999999999998865

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=3.6e-28  Score=181.53  Aligned_cols=165  Identities=27%  Similarity=0.434  Sum_probs=126.0

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCC--CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDR--LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      ...+.++|+++|++|||||||+++|++..  .....+|.+.....+                                  
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~----------------------------------   62 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKF----------------------------------   62 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEE----------------------------------
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEE----------------------------------
Confidence            45678899999999999999999998776  223344444222111                                  


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                                     ...+..+.+||+||++++.....      .++..+|++++|+|++++.++..+..++..++....
T Consensus        63 ---------------~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  121 (190)
T 2h57_A           63 ---------------KSSSLSFTVFDMSGQGRYRNLWE------HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPD  121 (190)
T ss_dssp             ---------------ECSSCEEEEEEECCSTTTGGGGG------GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTT
T ss_pred             ---------------EECCEEEEEEECCCCHHHHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChh
Confidence                           11135789999999998877766      677889999999999999999998888888876544


Q ss_pred             C--CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 L--ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .  .+.|+++|+||+|+.+....+++.+.+....            .....+++++|||++|.|+++++++|.+.+
T Consensus       122 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  185 (190)
T 2h57_A          122 IKHRRIPILFFANKMDLRDAVTSVKVSQLLCLEN------------IKDKPWHICASDAIKGEGLQEGVDWLQDQI  185 (190)
T ss_dssp             TTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGG------------CCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             hccCCCeEEEEEeCcCcccCCCHHHHHHHhChhh------------ccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence            4  5799999999999988777777777664221            112347899999999999999999998876

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.96  E-value=1.4e-28  Score=179.75  Aligned_cols=162  Identities=15%  Similarity=0.210  Sum_probs=124.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      |++++|+++|++|||||||+++|.+..+. ...||.+.....                                      
T Consensus         1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------   42 (167)
T 1c1y_A            1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK--------------------------------------   42 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE--------------------------------------
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEE--------------------------------------
Confidence            46789999999999999999999987654 223333211100                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+..++..+.......+
T Consensus        43 --------~~~~~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  108 (167)
T 1c1y_A           43 --------QVEVDCQQCMLEILDTAGTEQFTAMRD------LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED  108 (167)
T ss_dssp             --------EEESSSCEEEEEEEEECSSCSSTTHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSC
T ss_pred             --------EEEECCEEEEEEEEECCChHHHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCC
Confidence                    011223345689999999988877766      566789999999999999999988888877766544568


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++..++.+...                ..+++++||++|.|+++++++|.+.+
T Consensus       109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          109 VPMILVGNKCDLEDERVVGKEQGQNLARQWC----------------NCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHTT----------------SCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CcEEEEEECccccccccCCHHHHHHHHHHcc----------------CCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            99999999999965  345667777666542                27899999999999999999998875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.96  E-value=1.5e-28  Score=184.80  Aligned_cols=165  Identities=27%  Similarity=0.420  Sum_probs=124.9

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCC--CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP--VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      ...+++|+|+|++|||||||+++|++..+...  .||++.....+                                   
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~-----------------------------------   58 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF-----------------------------------   58 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE-----------------------------------
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE-----------------------------------
Confidence            35678999999999999999999998776542  45554221111                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                    ......+.+|||||++.+.....      .++..+|++++|+|++++.+|..+..++..++.....
T Consensus        59 --------------~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~  118 (199)
T 4bas_A           59 --------------EKGRVAFTVFDMGGAKKFRGLWE------TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDI  118 (199)
T ss_dssp             --------------EETTEEEEEEEECCSGGGGGGGG------GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHH
T ss_pred             --------------EeCCEEEEEEECCCCHhHHHHHH------HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhh
Confidence                          23346799999999998887777      6778999999999999999999988888888654221


Q ss_pred             -------CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 -------ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 -------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                             .++|+++|+||+|+......+++.+.+.....           .....+++++|||++|.|+++++++|.+.+
T Consensus       119 ~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  187 (199)
T 4bas_A          119 RRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL-----------MGDHPFVIFASNGLKGTGVHEGFSWLQETA  187 (199)
T ss_dssp             HSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHH-----------HTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             hhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhh-----------ccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence                   28999999999999887777777666543210           011347999999999999999999998764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.96  E-value=3.6e-28  Score=177.54  Aligned_cols=161  Identities=18%  Similarity=0.209  Sum_probs=122.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      +++++|+++|++|||||||+++|.+..+. ...+|.+.....                                      
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--------------------------------------   43 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK--------------------------------------   43 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE--------------------------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEE--------------------------------------
Confidence            57889999999999999999999987654 222222211100                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+..++..+.......+
T Consensus        44 --------~~~~~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  109 (168)
T 1u8z_A           44 --------KVVLDGEEVQIDILDTAGQEDYAAIRD------NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN  109 (168)
T ss_dssp             --------EEEETTEEEEEEEEECCC---CHHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             --------EEEECCEEEEEEEEECCCcchhHHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                    011122334688999999988877766      566789999999999999999988888888776554468


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++..++++...                 ++++++||++|.|+++++++|.+.+
T Consensus       110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (168)
T 1u8z_A          110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWN-----------------VNYVETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             SCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEECccccccCccCHHHHHHHHHHcC-----------------CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence            99999999999965  456677777777665                 7899999999999999999998765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.96  E-value=6e-28  Score=179.13  Aligned_cols=162  Identities=19%  Similarity=0.198  Sum_probs=127.2

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+++||+++|++|||||||+++|++..+. ...+|.+......                                    
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~------------------------------------   58 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKH------------------------------------   58 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE------------------------------------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEE------------------------------------
Confidence            356789999999999999999999976554 3333333211000                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                                ....+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.......
T Consensus        59 ----------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  122 (183)
T 3kkq_A           59 ----------TEIDNQWAILDVLDTAGQEEFSAMRE------QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE  122 (183)
T ss_dssp             ----------EEETTEEEEEEEEECCSCGGGCSSHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS
T ss_pred             ----------EEeCCcEEEEEEEECCCchhhHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence                      11122334577899999998887776      56778999999999999999999888888876655557


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeec-cccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL-MRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.+  ....++..++.+...                 ++++++||+ +|.|+++++++|.+.+
T Consensus       123 ~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~~v~~l~~~l~~~i  180 (183)
T 3kkq_A          123 SFPMILVANKVDLMHLRKVTRDQGKEMATKYN-----------------IPYIETSAKDPPLNVDKTFHDLVRVI  180 (183)
T ss_dssp             CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-----------------CCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCchhccCcCHHHHHHHHHHhC-----------------CeEEEeccCCCCCCHHHHHHHHHHHH
Confidence            899999999999975  566777888887766                 789999999 9999999999998865

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.96  E-value=6e-28  Score=177.72  Aligned_cols=162  Identities=19%  Similarity=0.201  Sum_probs=111.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +++++|+++|++|||||||+++|++..+....++.+......                                      
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~--------------------------------------   43 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYER--------------------------------------   43 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEE--------------------------------------
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEE--------------------------------------
Confidence            467899999999999999999999876654333333211111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhh--hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERF--EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                             ...+.+....+.+||+||++.+  .....      .++..+|++++|+|++++.++..+..++..+.......
T Consensus        44 -------~~~~~~~~~~~~~~D~~g~~~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~  110 (175)
T 2nzj_A           44 -------TLTVDGEDTTLVVVDTWEAEKLDKSWSQE------SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQAD  110 (175)
T ss_dssp             -------EEEETTEEEEEEEECCC-------CHHHH------HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC---
T ss_pred             -------EEEECCEEEEEEEEecCCCCccchhhhHH------hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccC
Confidence                   0112223456889999998763  33333      45677999999999999999998887777776543345


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+++|+||+|+.+  ....++...+.....                 ++++++||++|.|+++++++|.+.+
T Consensus       111 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~~  167 (175)
T 2nzj_A          111 HVPIILVGNKADLARCREVSVEEGRACAVVFD-----------------CKFIETSATLQHNVAELFEGVVRQL  167 (175)
T ss_dssp             -CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT-----------------SEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCEEEEEEChhhccccccCHHHHHHHHHHcC-----------------CeEEEEecCCCCCHHHHHHHHHHHH
Confidence            899999999999975  345566666665554                 7899999999999999999998765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.96  E-value=4.4e-28  Score=179.54  Aligned_cols=161  Identities=22%  Similarity=0.216  Sum_probs=124.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++++|+++|++|||||||+++|++..+. ...||.+......                                     
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   46 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-------------------------------------   46 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEE-------------------------------------
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE-------------------------------------
Confidence            46789999999999999999999976654 3334433222110                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               ..+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++.++.......+
T Consensus        47 ---------~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  111 (181)
T 3t5g_A           47 ---------ITVNGQEYHLQLVDTAGQDEYSIFPQ------TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ  111 (181)
T ss_dssp             ---------EEETTEEEEEEEEECCCCCTTCCCCG------GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----
T ss_pred             ---------EEECCEEEEEEEEeCCCchhhhHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                     11122345688999999998876666      667889999999999999999998888888876655568


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+++|+||+|+.+  ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       112 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~~  167 (181)
T 3t5g_A          112 IPIMLVGNKKDLHMERVISYEEGKALAESWN-----------------AAFLESSAKENQTAVDVFRRIILEA  167 (181)
T ss_dssp             CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccchhcceecHHHHHHHHHHhC-----------------CcEEEEecCCCCCHHHHHHHHHHHH
Confidence            99999999999964  456777888777766                 7899999999999999999998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.96  E-value=3.1e-28  Score=177.70  Aligned_cols=161  Identities=16%  Similarity=0.245  Sum_probs=123.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      |++.+|+++|++|||||||+++|.++.+. ...+|.+....                                       
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------   41 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR---------------------------------------   41 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE---------------------------------------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEE---------------------------------------
Confidence            46789999999999999999999987654 22222221100                                       


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                             ....+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.......+
T Consensus        42 -------~~~~~~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  108 (167)
T 1kao_A           42 -------KEIEVDSSPSVLEILDTAGTEQFASMRD------LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK  108 (167)
T ss_dssp             -------EEEEETTEEEEEEEEECCCTTCCHHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             -------EEEEECCEEEEEEEEECCCchhhHHHHH------HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                   0011223345688999999988877766      556789999999999999999988888888776554568


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  +...++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  164 (167)
T 1kao_A          109 VPVILVGNKVDLESEREVSSSEGRALAEEWG-----------------CPFMETSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCcccccccCCHHHHHHHHHHhC-----------------CCEEEecCCCCcCHHHHHHHHHHHH
Confidence            99999999999864  445666677666655                 6899999999999999999998765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.96  E-value=7.3e-28  Score=176.28  Aligned_cols=164  Identities=18%  Similarity=0.178  Sum_probs=125.9

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      |..+++++|+++|++|||||||+++|++..+.. ..++.+......                                  
T Consensus         1 g~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------   46 (170)
T 1r2q_A            1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ----------------------------------   46 (170)
T ss_dssp             CCEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEE----------------------------------
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE----------------------------------
Confidence            456788999999999999999999999876542 333333222111                                  


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                                 ...+......+.+||+||++++.....      .++..+|++++|+|++++.++..+..++..+... .
T Consensus        47 -----------~~~~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~  108 (170)
T 1r2q_A           47 -----------TVCLDDTTVKFEIWDTAGQERYHSLAP------MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ-A  108 (170)
T ss_dssp             -----------EEEETTEEEEEEEEEECCSGGGGGGHH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-S
T ss_pred             -----------EEEECCEEEEEEEEeCCCcHHhhhhhH------HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-c
Confidence                       011122345689999999998877766      5678899999999999999998888787777544 2


Q ss_pred             CCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..+.|+++|+||+|+.+  ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       109 ~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          109 SPNIVIALSGNKADLANKRAVDFQEAQSYADDNS-----------------LLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             CCCCcEEEEEECccCccccccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            35799999999999964  345667777666544                 7899999999999999999998875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.96  E-value=1.2e-27  Score=178.25  Aligned_cols=161  Identities=19%  Similarity=0.298  Sum_probs=122.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++++|+++|++|||||||+++|++..+.. ..+|.......                                      
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------   43 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRK--------------------------------------   43 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEE--------------------------------------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEE--------------------------------------
Confidence            568899999999999999999999876542 22222110000                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.......+
T Consensus        44 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  109 (189)
T 4dsu_A           44 --------QVVIDGETCLLDILDTAGQEEYSAMRD------QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED  109 (189)
T ss_dssp             --------EEEETTEEEEEEEEECCCC---CTTHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             --------EEEECCcEEEEEEEECCCcHHHHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                    011223345688999999998888777      666789999999999999999998888888776555568


Q ss_pred             CcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.. ....++...+.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       110 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~~  164 (189)
T 4dsu_A          110 VPMVLVGNKCDLPSRTVDTKQAQDLARSYG-----------------IPFIETSAKTRQGVDDAFYTLVREI  164 (189)
T ss_dssp             CCEEEEEECTTSSSCSSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEECccCcccccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999975 445667777777665                 7899999999999999999998765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.95  E-value=1.4e-27  Score=174.92  Aligned_cols=163  Identities=21%  Similarity=0.211  Sum_probs=118.5

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      ...++++|+++|++|||||||+++|++..+. ...||.+......                                   
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~-----------------------------------   46 (170)
T 1z08_A            2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK-----------------------------------   46 (170)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEE-----------------------------------
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEE-----------------------------------
Confidence            3467889999999999999999999987654 3334443222111                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+... ..
T Consensus        47 ----------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~  109 (170)
T 1z08_A           47 ----------KLNIGGKRVNLAIWDTAGQERFHALGP------IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM-LG  109 (170)
T ss_dssp             ----------EEESSSCEEEEEEEECCCC-------C------CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-HG
T ss_pred             ----------EEEECCEEEEEEEEECCCcHhhhhhHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cC
Confidence                      011122345689999999988876666      6678899999999999999998888777765432 22


Q ss_pred             CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.|+++|+||+|+.+  ....++..++.+...                 .+++++||++|.|+++++++|.+.+
T Consensus       110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (170)
T 1z08_A          110 NEICLCIVGNKIDLEKERHVSIQEAESYAESVG-----------------AKHYHTSAKQNKGIEELFLDLCKRM  167 (170)
T ss_dssp             GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEECcccccccccCHHHHHHHHHHcC-----------------CeEEEecCCCCCCHHHHHHHHHHHH
Confidence            5799999999999975  456677777777655                 7899999999999999999998764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=7.3e-28  Score=181.46  Aligned_cols=161  Identities=19%  Similarity=0.200  Sum_probs=122.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.+||+|+|++|||||||+++|++..+. ...+|.+......                                     
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   64 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKI-------------------------------------   64 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEE-------------------------------------
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEE-------------------------------------
Confidence            46789999999999999999999987765 2223332111000                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               ..+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.......+
T Consensus        65 ---------~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  129 (201)
T 3oes_A           65 ---------VTLGKDEFHLHLVDTAGQDEYSILPY------SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR  129 (201)
T ss_dssp             ---------EC----CEEEEEEEECCCCTTCCCCG------GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----C
T ss_pred             ---------EEECCEEEEEEEEECCCccchHHHHH------HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                     11223345689999999988877766      677889999999999999999999888888876544568


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+++|+||+|+..  .....+...+.+...                 ++++++||++|.|++++|++|.+.+
T Consensus       130 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~i  185 (201)
T 3oes_A          130 VPVVLVGNKADLSPEREVQAVEGKKLAESWG-----------------ATFMESSARENQLTQGIFTKVIQEI  185 (201)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccCccccccCHHHHHHHHHHhC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999964  455677777777666                 7899999999999999999998765

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.95  E-value=1.4e-27  Score=176.66  Aligned_cols=162  Identities=19%  Similarity=0.260  Sum_probs=123.6

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+.++|+++|++|||||||+++|++..+. ...+|.+.....                                     
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-------------------------------------   48 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTK-------------------------------------   48 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEE-------------------------------------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEE-------------------------------------
Confidence            356789999999999999999999987544 222232211110                                     


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                               ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+..++.+++......
T Consensus        49 ---------~~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  113 (181)
T 2fn4_A           49 ---------ICSVDGIPARLDILDTAGQEEFGAMRE------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD  113 (181)
T ss_dssp             ---------EEEETTEEEEEEEEECCCTTTTSCCHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS
T ss_pred             ---------EEEECCEEEEEEEEECCCchhhHHHHH------HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC
Confidence                     011122335688999999988877766      55678999999999999999998888888886655557


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.+  ....++...+.....                 ++++++||++|.|+++++++|.+.+
T Consensus       114 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~l~~~~  170 (181)
T 2fn4_A          114 DFPVVLVGNKADLESQRQVPRSEASAFGASHH-----------------VAYFEASAKLRLNVDEAFEQLVRAV  170 (181)
T ss_dssp             CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CeEEEecCCCCCCHHHHHHHHHHHH
Confidence            899999999999975  445666666665544                 7899999999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.95  E-value=3.3e-27  Score=172.83  Aligned_cols=163  Identities=18%  Similarity=0.167  Sum_probs=124.5

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      -.+++++|+++|++|||||||+++|.+..+. ...|+.+......                                   
T Consensus         2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-----------------------------------   46 (170)
T 1z0j_A            2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK-----------------------------------   46 (170)
T ss_dssp             CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE-----------------------------------
T ss_pred             CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEE-----------------------------------
Confidence            3467899999999999999999999987754 3334443222111                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                ...+......+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.. ...
T Consensus        47 ----------~~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~  109 (170)
T 1z0j_A           47 ----------TVQYQNELHKFLIWDTAGLERFRALAP------MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ-HGP  109 (170)
T ss_dssp             ----------EEEETTEEEEEEEEEECCSGGGGGGTH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-HSC
T ss_pred             ----------EEEECCeEEEEEEEcCCCchhhhcccH------hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-hCC
Confidence                      011123345688999999988877666      567889999999999999999888777766654 334


Q ss_pred             CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...|+++|+||+|+.+  +...++...+.+...                 .+++++||++|.|+++++++|.+.+
T Consensus       110 ~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          110 PSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-----------------AIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             CCCcEEEEEECCccccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            6899999999999975  345666666666554                 7899999999999999999998875

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.95  E-value=1.7e-27  Score=177.06  Aligned_cols=162  Identities=18%  Similarity=0.201  Sum_probs=124.0

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .+++++|+++|++|||||||+++|.+..+.. ..+|.+.....                                     
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-------------------------------------   57 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-------------------------------------   57 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEE-------------------------------------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEE-------------------------------------
Confidence            3567899999999999999999999876542 22222211100                                     


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                               ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.......
T Consensus        58 ---------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  122 (187)
T 2a9k_A           58 ---------KVVLDGEEVQIDILDTAGQEDYAAIRD------NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE  122 (187)
T ss_dssp             ---------EEEETTEEEEEEEEECCCTTCCHHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             ---------EEEECCEEEEEEEEECCCCcccHHHHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence                     001122234688999999988877766      56678999999999999999998888888877655556


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+++|+||+|+.+  ....+++.++++...                 ++++++||++|.|+++++++|.+.+
T Consensus       123 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (187)
T 2a9k_A          123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN-----------------VNYVETSAKTRANVDKVFFDLMREI  179 (187)
T ss_dssp             TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEEECccccccCccCHHHHHHHHHHcC-----------------CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence            899999999999965  456677777777655                 7899999999999999999998764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.95  E-value=5.3e-27  Score=173.59  Aligned_cols=164  Identities=20%  Similarity=0.209  Sum_probs=124.6

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      +-.+++++|+++|++|||||||+++|++..+.. ..++++......                                  
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------   52 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQ----------------------------------   52 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEE----------------------------------
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEE----------------------------------
Confidence            345677899999999999999999999876552 233433222111                                  


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                                 ...+......+.+||+||++++.....      .++..+|++++|+|++++.++.....++..+... .
T Consensus        53 -----------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~  114 (181)
T 2efe_B           53 -----------TLAVNDATVKFEIWDTAGQERYHSLAP------MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ-G  114 (181)
T ss_dssp             -----------EEEETTEEEEEEEEECCCSGGGGGGTH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-S
T ss_pred             -----------EEEECCEEEEEEEEeCCCChhhhhhhH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-c
Confidence                       011122345689999999988877766      5678899999999999999998888788777654 2


Q ss_pred             CCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..+.|+++|+||+|+.+  ....+++.++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       115 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~~  173 (181)
T 2efe_B          115 NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENG-----------------LFFMETSAKTATNVKEIFYEIARRL  173 (181)
T ss_dssp             CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred             CCCCcEEEEEECCcccccccCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            35899999999999965  345677777776655                 7899999999999999999998865

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=3.1e-27  Score=172.93  Aligned_cols=161  Identities=20%  Similarity=0.211  Sum_probs=123.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      +++++|+++|++|||||||+++|.+..+. ...|+.+......                                     
T Consensus         1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------   43 (170)
T 1ek0_A            1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQ-------------------------------------   43 (170)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEE-------------------------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE-------------------------------------
Confidence            35789999999999999999999987654 3334443222111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.... ..+
T Consensus        44 --------~~~~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  108 (170)
T 1ek0_A           44 --------RVTINEHTVKFEIWDTAGQERFASLAP------XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKD  108 (170)
T ss_dssp             --------EEEETTEEEEEEEEEECCSGGGGGGHH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTT
T ss_pred             --------EEEECCEEEEEEEEECCCChhhhhhhh------hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCC
Confidence                    011122345689999999988877766      66788999999999999999998887777776542 368


Q ss_pred             CcEEEEEecCCCCC-----CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG-----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+..     ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       109 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-----------------LLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-----------------CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             CcEEEEEECCCccccccccCCCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999964     345566666666555                 7899999999999999999998875

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.95  E-value=3e-27  Score=176.34  Aligned_cols=167  Identities=19%  Similarity=0.173  Sum_probs=122.0

Q ss_pred             ccccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      +-...++.++|+++|++|||||||+++|++..+. ...++.+......                                
T Consensus        13 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--------------------------------   60 (189)
T 1z06_A           13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRER--------------------------------   60 (189)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEE--------------------------------
T ss_pred             CCCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEE--------------------------------
Confidence            3445678899999999999999999999987665 2334433221111                                


Q ss_pred             cccCCcccceeceeccccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           93 QPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                                   ...+.+....+.+||+||++++. ....      .++..+|++++|+|++++.++..+..|+.++..
T Consensus        61 -------------~~~~~~~~~~~~l~Dt~G~~~~~~~~~~------~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~  121 (189)
T 1z06_A           61 -------------AVDIDGERIKIQLWDTAGQERFRKSMVQ------HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ  121 (189)
T ss_dssp             -------------EEEETTEEEEEEEEECCCSHHHHTTTHH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             -------------EEEECCEEEEEEEEECCCchhhhhhhhH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence                         01112233568999999998876 5555      556789999999999999999998888888776


Q ss_pred             ccCCCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc---cchHHHHHHHhh
Q psy871          172 DESLASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR---QGYGDGFRWLAN  246 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g---~gv~~l~~~l~~  246 (249)
                      .....+.|+++|+||+|+.+  ....++...+.+...                 ++++++||++|   .|+++++++|.+
T Consensus       122 ~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~~~~i~~l~~~l~~  184 (189)
T 1z06_A          122 HLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-----------------MPLFETSAKNPNDNDHVEAIFMTLAH  184 (189)
T ss_dssp             HCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred             hcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcC-----------------CEEEEEeCCcCCcccCHHHHHHHHHH
Confidence            54457899999999999965  345666766666554                 68999999999   999999999987


Q ss_pred             hc
Q psy871          247 YI  248 (249)
Q Consensus       247 ~i  248 (249)
                      .+
T Consensus       185 ~i  186 (189)
T 1z06_A          185 KL  186 (189)
T ss_dssp             --
T ss_pred             HH
Confidence            65

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.95  E-value=3e-27  Score=176.81  Aligned_cols=172  Identities=22%  Similarity=0.196  Sum_probs=127.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+|+|++|||||||+++|++..+. ...||.+......      ..+.+.+.+..                    
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------~~~~~~~~~~~--------------------   62 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREK------RVVYRANGPDG--------------------   62 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE------EEEECTTSCCC--------------------
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeE------EEEEecCCccc--------------------
Confidence            45689999999999999999999987764 3445554322200      00000000000                    


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               .........+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.......+
T Consensus        63 ---------~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  127 (195)
T 3bc1_A           63 ---------AVGRGQRIHLQLWDTAGLERFRSLTT------AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN  127 (195)
T ss_dssp             ---------SSCCCEEEEEEEEEECCSGGGHHHHH------HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSS
T ss_pred             ---------ccccCcEEEEEEEeCCCcHHHHHHHH------HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                     00112245789999999988877666      677889999999999999999988888888766544468


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....+++.++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~~  183 (195)
T 3bc1_A          128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYG-----------------IPYFETSAANGTNISHAIEMLLDLI  183 (195)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999975  455677777776655                 6899999999999999999998754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=4.5e-27  Score=173.84  Aligned_cols=164  Identities=20%  Similarity=0.248  Sum_probs=119.3

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      ....++++|+++|++|||||||+++|++..+.  ...||.+......                                 
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~---------------------------------   51 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK---------------------------------   51 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEE---------------------------------
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEE---------------------------------
Confidence            34577899999999999999999999987764  2333433222111                                 


Q ss_pred             ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                                  ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+....
T Consensus        52 ------------~~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~  113 (180)
T 2g6b_A           52 ------------VLDVDGVKVKLQMWDTAGQERFRSVTH------AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA  113 (180)
T ss_dssp             ------------EEEETTEEEEEEEEECCCC--------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS
T ss_pred             ------------EEEECCEEEEEEEEeCCCcHHHHHHHH------HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence                        001122345689999999988877666      67788999999999999999988887777765432


Q ss_pred             CCCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ..+.|+++|+||+|+.+  ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       114 -~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  172 (180)
T 2g6b_A          114 -QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG-----------------LPFMETSAKTGLNVDLAFTAIAKEL  172 (180)
T ss_dssp             -CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             -CCCCcEEEEEECcccCcccccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence             26799999999999975  345667777666655                 7899999999999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=3.2e-27  Score=176.84  Aligned_cols=162  Identities=22%  Similarity=0.232  Sum_probs=125.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      +++++|+|+|++|||||||+++|++..+. ...+|.+......                                     
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   55 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK-------------------------------------   55 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE-------------------------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEE-------------------------------------
Confidence            56789999999999999999999987754 3334443222111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+......+.+||+||++.+.....      .++..+|++++|+|++++.++..+..|+..+.......+
T Consensus        56 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  121 (195)
T 1x3s_A           56 --------TISVDGNKAKLAIWDTAGQERFRTLTP------SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND  121 (195)
T ss_dssp             --------EEEETTEEEEEEEEEECSSGGGCCSHH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSC
T ss_pred             --------EEEECCeEEEEEEEeCCCchhhhhhhH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCC
Confidence                    011123345789999999988877766      567889999999999999999988888888765444467


Q ss_pred             CcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.. ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       122 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  176 (195)
T 1x3s_A          122 IVNMLVGNKIDKENREVDRNEGLKFARKHS-----------------MLFIEASAKTCDGVQCAFEELVEKI  176 (195)
T ss_dssp             CEEEEEEECTTSSSCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEECCcCcccccCHHHHHHHHHHcC-----------------CEEEEecCCCCCCHHHHHHHHHHHH
Confidence            99999999999965 345667777766654                 7899999999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.95  E-value=3.3e-27  Score=178.33  Aligned_cols=161  Identities=18%  Similarity=0.207  Sum_probs=124.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ++.++|+|+|++|||||||+++|.+..+. ...+|.+.....                                      
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------   53 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK--------------------------------------   53 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEE--------------------------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEE--------------------------------------
Confidence            56789999999999999999999987654 222332211100                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.......+
T Consensus        54 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  119 (206)
T 2bov_A           54 --------KVVLDGEEVQIDILDTAGQEDYAAIRD------NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN  119 (206)
T ss_dssp             --------EEEETTEEEEEEEEECCCTTCCHHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             --------EEEECCEEEEEEEEcCCChhhhHHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                    011122234688999999988877766      566789999999999999999988888888776544468


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....+++.++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~i  175 (206)
T 2bov_A          120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN-----------------VNYVETSAKTRANVDKVFFDLMREI  175 (206)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEeccCccccccccHHHHHHHHHHhC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999975  456777877777665                 7899999999999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=4.3e-27  Score=176.00  Aligned_cols=162  Identities=17%  Similarity=0.162  Sum_probs=125.7

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..++++|+|+|++|+|||||+++|++..+. ...|+.+......                                    
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~------------------------------------   63 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK------------------------------------   63 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEE------------------------------------
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEE------------------------------------
Confidence            356789999999999999999999987754 3444444322211                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                               ...+......+.+||+||++++.....      .++..+|++++|+|++++.++..+..++..+... ...
T Consensus        64 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~  127 (192)
T 2fg5_A           64 ---------TVPCGNELHKFLIWDTAGQERFHSLAP------MYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH-GPE  127 (192)
T ss_dssp             ---------EEECSSSEEEEEEEEECCSGGGGGGTH------HHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCT
T ss_pred             ---------EEEeCCEEEEEEEEcCCCchhhHhhhH------HhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCC
Confidence                     011122345689999999988877766      5678899999999999999999888777776543 235


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.+  ....+++.++++...                 ++++++||++|.|+++++++|.+.+
T Consensus       128 ~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i  184 (192)
T 2fg5_A          128 NIVMAIAGNKCDLSDIREVPLKDAKEYAESIG-----------------AIVVETSAKNAINIEELFQGISRQI  184 (192)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTT-----------------CEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             CCcEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            799999999999974  456677777776654                 7899999999999999999998865

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.95  E-value=4.5e-27  Score=171.23  Aligned_cols=161  Identities=19%  Similarity=0.276  Sum_probs=122.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      |++.+|+++|++|||||||+++|.+..+.. ..+|.+.....                                      
T Consensus         1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~--------------------------------------   42 (166)
T 2ce2_X            1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRK--------------------------------------   42 (166)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEE--------------------------------------
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEE--------------------------------------
Confidence            467899999999999999999998876542 22222111000                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              .....+....+.+||+||++++.....      .++..+|++++|+|++++.++..+..++..+.......+
T Consensus        43 --------~~~~~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~  108 (166)
T 2ce2_X           43 --------QVVIDGETCLLDILDTAGQEEYSAMRD------QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD  108 (166)
T ss_dssp             --------EEEETTEEEEEEEEECCCCSSCCHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSC
T ss_pred             --------EEEECCEEEEEEEEECCCchhhhHHHH------HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence                    011122345688999999988777666      566789999999999999999888877777765544458


Q ss_pred             CcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+ ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       109 ~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (166)
T 2ce2_X          109 VPMVLVGNKSDLAARTVESRQAQDLARSYG-----------------IPYIETSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             CCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------CCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEEchhhhhcccCHHHHHHHHHHcC-----------------CeEEEecCCCCCCHHHHHHHHHHHH
Confidence            99999999999976 445667777776655                 7899999999999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.95  E-value=3.1e-27  Score=178.03  Aligned_cols=161  Identities=18%  Similarity=0.152  Sum_probs=120.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|||||||+++|++..+. ...||++......                                     
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   69 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMK-------------------------------------   69 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEE-------------------------------------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEE-------------------------------------
Confidence            45679999999999999999999887654 2333333211111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+..|+..+.... ..+
T Consensus        70 --------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~  134 (201)
T 2hup_A           70 --------TLEIQGKRVKLQIWDTAGQERFRTITQ------SYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSN  134 (201)
T ss_dssp             --------EEEETTEEEEEEEECCTTCGGGHHHHH------HHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTT
T ss_pred             --------EEEECCEEEEEEEEECCCcHhHHHHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence                    011122335789999999998877766      66788999999999999999998887877775432 367


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCce-eEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI-ELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+++|+||+|+.+  ....+++.++++...                 + ++++|||++|.|+++++++|.+.+
T Consensus       135 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~SA~~g~gi~~l~~~l~~~i  191 (201)
T 2hup_A          135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYD-----------------ILCAIETSAKDSSNVEEAFLRVATEL  191 (201)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCccccccccCHHHHHHHHHHcC-----------------CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999975  456777777777655                 5 899999999999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.95  E-value=2.6e-27  Score=177.44  Aligned_cols=162  Identities=17%  Similarity=0.232  Sum_probs=121.8

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      ....+++||+++|++|+|||||+++|++..+. ...||.+......                                  
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~----------------------------------   63 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHV----------------------------------   63 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE----------------------------------
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEE----------------------------------
Confidence            34567899999999999999999999987754 2333332111110                                  


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhcc
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDE  173 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~  173 (249)
                                  ..+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+ ..|+..+... 
T Consensus        64 ------------~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-  124 (194)
T 3reg_A           64 ------------MKYKNEEFILHLWDTAGQEEYDRLRP------LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-  124 (194)
T ss_dssp             ------------EEETTEEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-
T ss_pred             ------------EEECCEEEEEEEEECCCcHHHHHHhH------hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh-
Confidence                        11223345689999999998887777      677889999999999999999886 4444444322 


Q ss_pred             CCCCCcEEEEEecCCCCC----CCCHHHHHHHhhhcccccCcccCCCCCCCCCcee-EEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHG----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIE-LFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ..+.|+++|+||+|+.+    ....++..++.+...                 .+ ++++||++|.|+++++++|.+.+
T Consensus       125 -~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~gi~~l~~~l~~~i  186 (194)
T 3reg_A          125 -IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG-----------------CVAYIEASSVAKIGLNEVFEKSVDCI  186 (194)
T ss_dssp             -CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT-----------------CSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             -CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC-----------------CCEEEEeecCCCCCHHHHHHHHHHHH
Confidence             35799999999999974    466778888777766                 55 99999999999999999998764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.95  E-value=3.3e-27  Score=177.08  Aligned_cols=171  Identities=16%  Similarity=0.133  Sum_probs=121.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+.+||+++|++|||||||++++.+.....+.++........     ..                             +.
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~-----~~-----------------------------t~   57 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATED-----ER-----------------------------TL   57 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSS-----CE-----------------------------EE
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhcccccccccccccccc-----cc-----------------------------ce
Confidence            567899999999999999998887654333222110000000     00                             00


Q ss_pred             ccceeceec-cccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC------ChhhhHhhHHHHHHHHh
Q psy871           99 HPTRRVWKD-YFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS------DRERFEESKSELQCLLT  171 (249)
Q Consensus        99 ~~~~~~~~~-~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~------~~~~~~~~~~~~~~~~~  171 (249)
                      ......... .+.+....+.+|||||++.+.....      .++..+|++++|+|++      +..++..+..|+.++  
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--  129 (198)
T 3t1o_A           58 FFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK------LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--  129 (198)
T ss_dssp             EEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH------HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--
T ss_pred             eeeecccccccccCCceEEEEEeCCChHHHHHHHH------HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--
Confidence            000000000 2234456799999999998888777      6778999999999999      455666666566555  


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCce-eEEEeeeccccchHHHHHHHhhhc
Q psy871          172 DESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI-ELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .....+.|+++|+||+|+.+....+++.++++...                 + +++++||++|.|+++++++|.+.+
T Consensus       130 ~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~gv~~l~~~l~~~i  190 (198)
T 3t1o_A          130 GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG-----------------KFPVLEAVATEGKGVFETLKEVSRLV  190 (198)
T ss_dssp             TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC-----------------CSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred             ccccCCCCEEEEEEchhcccccCHHHHHHHHHhcC-----------------CceEEEEecCCCcCHHHHHHHHHHHH
Confidence            22346899999999999998888899988888665                 5 899999999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.95  E-value=3.5e-27  Score=175.31  Aligned_cols=158  Identities=12%  Similarity=0.122  Sum_probs=120.9

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      ..++++||+++|++|||||||++++++..+.. ..||.+.....                                    
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~------------------------------------   59 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKE------------------------------------   59 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEE------------------------------------
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEE------------------------------------
Confidence            35778999999999999999999999877653 33332111000                                    


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                 ..+.+....+.+|||+|++.+.           ++..+|++++|+|++++.+|..+..|+..+......
T Consensus        60 -----------~~~~~~~~~l~i~Dt~G~~~~~-----------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  117 (184)
T 3ihw_A           60 -----------IVVDGQSYLLLIRDEGGPPELQ-----------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNA  117 (184)
T ss_dssp             -----------EEETTEEEEEEEEECSSSCCHH-----------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCG
T ss_pred             -----------EEECCEEEEEEEEECCCChhhh-----------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence                       1112334568899999998775           345699999999999999999988888888655434


Q ss_pred             CCCcEEEEEecCCCC----CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKH----GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.|+++|+||+|+.    .....++..++.+...                ..++++|||++|.|++++|++|.+.+
T Consensus       118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~gv~~lf~~l~~~i  178 (184)
T 3ihw_A          118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK----------------RCTYYETCATYGLNVERVFQDVAQKV  178 (184)
T ss_dssp             GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT----------------TCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECcccccccccccCHHHHHHHHHHcC----------------CCeEEEecCCCCCCHHHHHHHHHHHH
Confidence            679999999999994    3456777777777653                26899999999999999999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.95  E-value=2.9e-27  Score=172.80  Aligned_cols=160  Identities=20%  Similarity=0.218  Sum_probs=123.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|||||||+++|.+..+. ...||.+......                                     
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   45 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLER-------------------------------------   45 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEE-------------------------------------
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEE-------------------------------------
Confidence            45789999999999999999999987654 3334433222111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+....  .+
T Consensus        46 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~  109 (168)
T 1z2a_A           46 --------QIQVNDEDVRLMLWDTAGQEEFDAITK------AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GD  109 (168)
T ss_dssp             --------EEEETTEEEEEEEECCTTGGGTTCCCH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CS
T ss_pred             --------EEEECCEEEEEEEEcCCCcHhHHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CC
Confidence                    011122345689999999988877666      56678999999999999999988887777775543  67


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....+++.++.+...                 .+++++||++|.|+++++++|.+.+
T Consensus       110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~  165 (168)
T 1z2a_A          110 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLK-----------------LRFYRTSVKEDLNVSEVFKYLAEKH  165 (168)
T ss_dssp             CCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             CCEEEEEECcccCcccccCHHHHHHHHHHcC-----------------CeEEEEecCCCCCHHHHHHHHHHHH
Confidence            99999999999965  445677777777665                 7899999999999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=5.6e-27  Score=176.51  Aligned_cols=161  Identities=17%  Similarity=0.133  Sum_probs=123.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|||||||+++|++..+. ...+|++......                                     
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   66 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK-------------------------------------   66 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEE-------------------------------------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEE-------------------------------------
Confidence            45689999999999999999999987665 3334443221111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+..|+..+... ...+
T Consensus        67 --------~~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~  131 (201)
T 2ew1_A           67 --------TVEINGEKVKLQIWDTAGQERFRSITQ------SYYRSANALILTYDITCEESFRCLPEWLREIEQY-ASNK  131 (201)
T ss_dssp             --------EEEETTEEEEEEEEEECCSGGGHHHHG------GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred             --------EEEECCEEEEEEEEECCCcHHHHHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCC
Confidence                    001122345689999999988877666      6778899999999999999999888787776543 2357


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++..++.+...                 +++++|||++|.|+++++++|.+.+
T Consensus       132 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gv~~l~~~l~~~i  187 (201)
T 2ew1_A          132 VITVLVGNKIDLAERREVSQQRAEEFSEAQD-----------------MYYLETSAKESDNVEKLFLDLACRL  187 (201)
T ss_dssp             CEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999974  445677777666554                 7899999999999999999998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.95  E-value=9.4e-27  Score=171.92  Aligned_cols=157  Identities=12%  Similarity=0.116  Sum_probs=116.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++++||+++|++|||||||+++|++..+....||.+......                                      
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~--------------------------------------   46 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKE--------------------------------------   46 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEE--------------------------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEE--------------------------------------
Confidence            567899999999999999999999887765555544211100                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh--ccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT--DESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~~~~  176 (249)
                              ..+.+....+.+||++|+++.           .++..+|++++|+|++++.++..+..|+..+..  .....
T Consensus        47 --------~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~  107 (178)
T 2iwr_A           47 --------MLVDGQTHLVLIREEAGAPDA-----------KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRG  107 (178)
T ss_dssp             --------EEETTEEEEEEEEECSSSCCH-----------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSC
T ss_pred             --------EEECCEEEEEEEEECCCCchh-----------HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCC
Confidence                    011223356889999998762           345679999999999999999988876444322  22235


Q ss_pred             CCcEEEEEecCCCC----CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKH----GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.    .....++..++.+...                ..+++++||++|.|++++|++|.+.+
T Consensus       108 ~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~~i~~lf~~l~~~~  167 (178)
T 2iwr_A          108 GLALALVGTQDRISASSPRVVGDARARALXADMK----------------RCSYYETXATYGLNVDRVFQEVAQKV  167 (178)
T ss_dssp             CCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS----------------SEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             CCCEEEEEECccccccccCcCCHHHHHHHHHhhc----------------CCeEEEEeccccCCHHHHHHHHHHHH
Confidence            79999999999994    2456677777666542                27899999999999999999998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=3.9e-27  Score=172.42  Aligned_cols=160  Identities=17%  Similarity=0.160  Sum_probs=113.7

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .+||+++|++|||||||+++|++..... ..++....  ..                                       
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~---------------------------------------   40 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSED--TY---------------------------------------   40 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------C--EE---------------------------------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCC--ee---------------------------------------
Confidence            3689999999999999999998654431 11111100  00                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                        ..  ...+.+....+.+||++|++.+.. ...      .++..+|++++|+|++++.++..+..++.++.......++
T Consensus        41 --~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  110 (169)
T 3q85_A           41 --ER--RIMVDKEEVTLIVYDIWEQGDAGGWLQD------HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL  110 (169)
T ss_dssp             --EE--EEEETTEEEEEEEECCCCC--------C------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC
T ss_pred             --eE--EEEECCeEEEEEEEECCCccccchhhhh------hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCC
Confidence              00  011223345688999999987765 333      3456799999999999999999998898888776544589


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.+  ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       111 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~l~~~i  165 (169)
T 3q85_A          111 PVILVGNKSDLARSREVSLEEGRHLAGTLS-----------------CKHIETSAALHHNTRELFEGAVRQI  165 (169)
T ss_dssp             CEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CEEEEeeCcchhhcccCCHHHHHHHHHHcC-----------------CcEEEecCccCCCHHHHHHHHHHHH
Confidence            9999999999973  566777777777665                 7899999999999999999998865

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.95  E-value=4.9e-27  Score=173.35  Aligned_cols=164  Identities=21%  Similarity=0.202  Sum_probs=123.1

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      +.++++++|+++|++|||||||+++|++..+. ...++.+......                                  
T Consensus         9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------   54 (179)
T 2y8e_A            9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK----------------------------------   54 (179)
T ss_dssp             ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE----------------------------------
T ss_pred             cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEE----------------------------------
Confidence            44678899999999999999999999977654 2233333211111                                  


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                                 ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.... 
T Consensus        55 -----------~~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-  116 (179)
T 2y8e_A           55 -----------TMYLEDRTVRLQLWDTAGQERFRSLIP------SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-  116 (179)
T ss_dssp             -----------EEEETTEEEEEEEEEECCSGGGGGGSH------HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-
T ss_pred             -----------EEEECCeEEEEEEEECCCcHHHHHHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-
Confidence                       011122334689999999988877666      56678999999999999999988887877775432 


Q ss_pred             CCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..+.|+++|+||+|+.+  ....++...+.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       117 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-----------------VMFIETSAKAGYNVKQLFRRVAAAL  175 (179)
T ss_dssp             TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred             CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            35799999999999964  445667777666655                 7899999999999999999998865

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.95  E-value=1.3e-26  Score=170.92  Aligned_cols=164  Identities=19%  Similarity=0.185  Sum_probs=121.2

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+.++|+++|++|||||||+++|++..+. ...||.+......                                    
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~------------------------------------   47 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNK------------------------------------   47 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEE------------------------------------
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEE------------------------------------
Confidence            456789999999999999999999887654 2233333211111                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--  174 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--  174 (249)
                               ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.....  
T Consensus        48 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  112 (177)
T 1wms_A           48 ---------DLEVDGHFVTMQIWDTAGQERFRSLRT------PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK  112 (177)
T ss_dssp             ---------EEEETTEEEEEEEEECCCCGGGHHHHG------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS
T ss_pred             ---------EEEECCEEEEEEEEeCCCchhhhhhHH------HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHcccc
Confidence                     011122335689999999988877666      677889999999999999999888777777654322  


Q ss_pred             -CCCCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 -LASCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 -~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ..+.|+++|+||+|+.. ....+++.++.+...                ..+++++||++|.|+++++++|.+.+
T Consensus       113 ~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~l~~~~  172 (177)
T 1wms_A          113 EPESFPFVILGNKIDISERQVSTEEAQAWCRDNG----------------DYPYFETSAKDATNVAAAFEEAVRRV  172 (177)
T ss_dssp             CTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTT----------------CCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccCCCcEEEEEECCcccccccCHHHHHHHHHhcC----------------CceEEEEeCCCCCCHHHHHHHHHHHH
Confidence             25789999999999964 456677777666322                27899999999999999999998764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.7e-27  Score=192.01  Aligned_cols=163  Identities=26%  Similarity=0.405  Sum_probs=123.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .++++|+|+|++|||||||+++|++..+....||++.....                                       
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~---------------------------------------  203 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET---------------------------------------  203 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEE---------------------------------------
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEE---------------------------------------
Confidence            45679999999999999999999876654333333322111                                       


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                                +...+..+.+|||||++.+.....      .++..+|++++|+|++++.++..+..++.+++......++
T Consensus       204 ----------~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~  267 (329)
T 3o47_A          204 ----------VEYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA  267 (329)
T ss_dssp             ----------EEETTEEEEEEECC-----CCSHH------HHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTC
T ss_pred             ----------EecCcEEEEEEECCCCHhHHHHHH------HHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCC
Confidence                      122345789999999998888777      6678899999999999999999988888888776555689


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.+....+++...+....            .....++++++||++|.|+++++++|.+.+
T Consensus       268 piilV~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~vSAk~g~gi~el~~~l~~~l  325 (329)
T 3o47_A          268 VLLVFANKQDLPNAMNAAEITDKLGLHS------------LRHRNWYIQATCATSGDGLYEGLDWLSNQL  325 (329)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHHTCTT------------CCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             eEEEEEECccCCcccCHHHHHHHhchhh------------hhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence            9999999999988777777766655332            223457999999999999999999999875

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.95  E-value=9.8e-27  Score=171.75  Aligned_cols=161  Identities=20%  Similarity=0.214  Sum_probs=123.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|||||||+++|++..+. ...+|.+......                                     
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   55 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR-------------------------------------   55 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEE-------------------------------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE-------------------------------------
Confidence            45689999999999999999999987654 2233333221111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+......+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+... ...+
T Consensus        56 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~  120 (179)
T 1z0f_A           56 --------IIEVSGQKIKLQIWDTAGQERFRAVTR------SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPN  120 (179)
T ss_dssp             --------EEEETTEEEEEEEEECTTGGGTCHHHH------HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred             --------EEEECCeEEEEEEEECCCChHhhhhHH------HHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHh-cCCC
Confidence                    011123345689999999988877666      6678899999999999999998888777766543 3357


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....+++.++++...                 ++++++||++|.|+++++++|.+.+
T Consensus       121 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i  176 (179)
T 1z0f_A          121 TVIILIGNKADLEAQRDVTYEEAKQFAEENG-----------------LLFLEASAKTGENVEDAFLEAAKKI  176 (179)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999964  455677777776655                 7899999999999999999998765

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.95  E-value=5.6e-27  Score=175.18  Aligned_cols=163  Identities=20%  Similarity=0.182  Sum_probs=123.3

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      -..+.+||+|+|++|||||||+++|++..+.. ..+|.+......                                   
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-----------------------------------   61 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-----------------------------------   61 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEE-----------------------------------
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEE-----------------------------------
Confidence            34677899999999999999999999876542 223332221111                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+... ..
T Consensus        62 ----------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~-~~  124 (191)
T 2a5j_A           62 ----------MVNIDGKQIKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SS  124 (191)
T ss_dssp             ----------EEEETTEEEEEEEECCTTGGGTSCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SC
T ss_pred             ----------EEEECCEEEEEEEEECCCchhhhhhHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cC
Confidence                      011122345689999999988877666      5677899999999999999999888777777543 23


Q ss_pred             CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.|+++|+||+|+.+  ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       125 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i  182 (191)
T 2a5j_A          125 SNMVIMLIGNKSDLESRRDVKREEGEAFAREHG-----------------LIFMETSAKTACNVEEAFINTAKEI  182 (191)
T ss_dssp             TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECcccCCccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5899999999999965  455677777776655                 7899999999999999999998754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.95  E-value=1e-26  Score=173.50  Aligned_cols=162  Identities=18%  Similarity=0.257  Sum_probs=114.7

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .+++++|+++|++|||||||+++|++..+.. ..+|.+.....                                     
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-------------------------------------   60 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-------------------------------------   60 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEE-------------------------------------
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEE-------------------------------------
Confidence            3678999999999999999999999776542 12222110000                                     


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                               ...+.+....+.+||+||++.+.....      .++..+|++++|+|+++..++..+..++..+.......
T Consensus        61 ---------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  125 (190)
T 3con_A           61 ---------QVVIDGETCLLDILDTAGQEEYSAMRD------QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSD  125 (190)
T ss_dssp             ---------EEEETTEEEEEEEEECCC-----------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCS
T ss_pred             ---------EEEECCEEEEEEEEECCChHHHHHHHH------HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCC
Confidence                     011122345688999999988777666      66788999999999999999988877777765544345


Q ss_pred             CCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.. ....+++.++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       126 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  181 (190)
T 3con_A          126 DVPMVLVGNKCDLPTRTVDTKQAHELAKSYG-----------------IPFIETSAKTRQGVEDAFYTLVREI  181 (190)
T ss_dssp             CCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCcCCcccCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            799999999999976 456677777777665                 6899999999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=7.5e-27  Score=171.20  Aligned_cols=160  Identities=16%  Similarity=0.232  Sum_probs=118.5

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++++|+++|++|||||||+++|++..+. ...||.+......                                      
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--------------------------------------   43 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV--------------------------------------   43 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE--------------------------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE--------------------------------------
Confidence            4679999999999999999999987654 2333332111110                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-CCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE-SLAS  177 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~  177 (249)
                              .........+.+||+||++++.....      .++..+|++++|+|++++.++.....++..+.... ...+
T Consensus        44 --------~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  109 (172)
T 2erx_A           44 --------ISCDKSICTLQITDTTGSHQFPAMQR------LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES  109 (172)
T ss_dssp             --------EEETTEEEEEEEEECCSCSSCHHHHH------HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---C
T ss_pred             --------EEECCEEEEEEEEECCCchhhHHHHH------HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence                    01122234688999999988877666      55677999999999999999988877776665432 2247


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+..  .....+...+.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       110 ~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          110 IPIMLVGNKCDESPSREVQSSEAEALARTWK-----------------CAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             CCEEEEEEccccccccccCHHHHHHHHHHhC-----------------CeEEEecCCCCcCHHHHHHHHHHHH
Confidence            99999999999965  344556666666554                 7899999999999999999998865

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.95  E-value=3.8e-27  Score=179.25  Aligned_cols=160  Identities=21%  Similarity=0.149  Sum_probs=122.4

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .++.+||+|+|++|||||||+++|++..+. ...||.+......                                    
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~------------------------------------   67 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAC------------------------------------   67 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE------------------------------------
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEE------------------------------------
Confidence            356789999999999999999999987765 2344443221100                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHh-hHHHHHHHHhccCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE-SKSELQCLLTDESL  175 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~  175 (249)
                                ..+.+....+.+||++|++++.....      .++..+|++++|+|++++.++.. +..|+..+...  .
T Consensus        68 ----------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~  129 (214)
T 3q3j_B           68 ----------LETEEQRVELSLWDTSGSPYYDNVRP------LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--C  129 (214)
T ss_dssp             ----------EEC--CEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--C
T ss_pred             ----------EEECCEEEEEEEEECCCCHhHHHHHH------HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--C
Confidence                      11223345789999999998887777      67788999999999999999988 56666666443  2


Q ss_pred             CCCcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCce-eEEEeeeccccc-hHH
Q psy871          176 ASCPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI-ELFMCSVLMRQG-YGD  239 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g-v~~  239 (249)
                      .+.|+++|+||+|+.+              ....++..++.+...                 + ++++|||++|.| +++
T Consensus       130 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~e~SA~~g~g~v~~  192 (214)
T 3q3j_B          130 PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG-----------------AEIYLEGSAFTSEKSIHS  192 (214)
T ss_dssp             TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-----------------CSEEEECCTTTCHHHHHH
T ss_pred             CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC-----------------CCEEEEeccCCCcccHHH
Confidence            5899999999999964              466777888777766                 6 899999999998 999


Q ss_pred             HHHHHhhhc
Q psy871          240 GFRWLANYI  248 (249)
Q Consensus       240 l~~~l~~~i  248 (249)
                      +|++|.+.+
T Consensus       193 lf~~l~~~~  201 (214)
T 3q3j_B          193 IFRTASMLC  201 (214)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.95  E-value=7.6e-27  Score=175.04  Aligned_cols=162  Identities=17%  Similarity=0.143  Sum_probs=118.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.+||+++|++|||||||+++|++.... ...|+.+......                                     
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------   63 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYER-------------------------------------   63 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEE-------------------------------------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEE-------------------------------------
Confidence            45679999999999999999999754322 1112211100000                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                              ...+.+....+.+||++|++.+.. ...      .++..+|++++|+|++++.+|..+..|+.++.......
T Consensus        64 --------~~~~~~~~~~l~i~Dt~g~~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~  129 (195)
T 3cbq_A           64 --------RIMVDKEEVTLVVYDIWEQGDAGGWLRD------HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH  129 (195)
T ss_dssp             --------EEEETTEEEEEEEECCCCCSGGGHHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTS
T ss_pred             --------EEEECCEEEEEEEEecCCCccchhhhHH------HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence                    011223345688999999987654 333      34567999999999999999999988888876544335


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+++|+||+|+.+  ....++..++.+...                 .++++|||++|.|++++|++|.+.+
T Consensus       130 ~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~-----------------~~~~e~Sa~~~~~v~~lf~~l~~~i  186 (195)
T 3cbq_A          130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLS-----------------CKHIETSAALHHNTRELFEGAVRQI  186 (195)
T ss_dssp             CCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCEEEEeechhccccCCcCHHHHHHHHHHhC-----------------CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence            899999999999975  355677777666554                 6899999999999999999998765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.95  E-value=1.2e-26  Score=173.07  Aligned_cols=161  Identities=23%  Similarity=0.256  Sum_probs=123.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ...++|+|+|++|||||||+++|++..+. ...+|.+......                                     
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   62 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK-------------------------------------   62 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEE-------------------------------------
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEE-------------------------------------
Confidence            45689999999999999999999987764 2334433222111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ..........+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+... ...+
T Consensus        63 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~  127 (189)
T 2gf9_A           63 --------TVYRHDKRIKLQIWDTAGQERYRTITT------AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY-SWDN  127 (189)
T ss_dssp             --------EEEETTEEEEEEEEECCSCCSSCCSGG------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred             --------EEEECCeEEEEEEEeCCCcHHHhhhHH------HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCC
Confidence                    011122345689999999988877766      6778899999999999999998888777776543 2357


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++..++.+..+                 ++++++||++|.|+++++++|.+.+
T Consensus       128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~i  183 (189)
T 2gf9_A          128 AQVILVGNKCDLEDERVVPAEDGRRLADDLG-----------------FEFFEASAKENINVKQVFERLVDVI  183 (189)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999975  345667777777665                 7899999999999999999998764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=8.1e-27  Score=170.78  Aligned_cols=160  Identities=20%  Similarity=0.231  Sum_probs=118.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..++|+++|++|||||||+++|++..+. ...||.+......                                      
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------   43 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK--------------------------------------   43 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEE--------------------------------------
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEE--------------------------------------
Confidence            3579999999999999999999987654 2223332111111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                             ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+... ...+.
T Consensus        44 -------~~~~~~~~~~~~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~  109 (170)
T 1g16_A           44 -------TVDINGKKVKLQIWDTAGQERFRTITT------AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH-ANDEA  109 (170)
T ss_dssp             -------EEESSSCEEEEEEECCTTGGGTSCCCH------HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred             -------EEEECCEEEEEEEEeCCCChhhhhhHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCC
Confidence                   011223345689999999988876665      5667899999999999999998888777776543 23579


Q ss_pred             cEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.. ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       110 piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gv~~l~~~l~~~~  163 (170)
T 1g16_A          110 QLLLVGNKSDMETRVVTADQGEALAKELG-----------------IPFIESSAKNDDNVNEIFFTLAKLI  163 (170)
T ss_dssp             EEEEEEECTTCTTCCSCHHHHHHHHHHHT-----------------CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cEEEEEECccCCcCccCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999954 445667777766655                 7899999999999999999998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.95  E-value=1.4e-26  Score=173.64  Aligned_cols=161  Identities=23%  Similarity=0.235  Sum_probs=123.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ...++|+++|++|||||||+++|++..+. ...++.+......                                     
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------   56 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR-------------------------------------   56 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEE-------------------------------------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE-------------------------------------
Confidence            35679999999999999999999987654 3333433222211                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+... ...+
T Consensus        57 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~  121 (196)
T 3tkl_A           57 --------TIELDGKTIKLQIWDTAGQERFRTITS------SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASEN  121 (196)
T ss_dssp             --------EEEETTEEEEEEEEEECCSGGGCTTHH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred             --------EEEECCEEEEEEEEECCCcHhhhhhHH------HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence                    011122335689999999998887777      6678899999999999999999888777776443 3357


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       122 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gv~~l~~~l~~~i  177 (196)
T 3tkl_A          122 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-----------------IPFLETSAKNATNVEQSFMTMAAEI  177 (196)
T ss_dssp             CEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999975  345566777777665                 7899999999999999999998765

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.95  E-value=8.7e-27  Score=172.32  Aligned_cols=160  Identities=21%  Similarity=0.271  Sum_probs=122.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|||||||+++|++..+. ...|+.+......                                     
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------   49 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR-------------------------------------   49 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEE-------------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEE-------------------------------------
Confidence            46789999999999999999999877654 2333333211111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+...  ..+
T Consensus        50 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~  113 (181)
T 3tw8_B           50 --------TVEINGEKVKLQIWDTAGQERFRTITS------TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDD  113 (181)
T ss_dssp             --------EEEETTEEEEEEEEEETTGGGCSSCCG------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTT
T ss_pred             --------EEEECCEEEEEEEEcCCCchhhhhhHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCC
Confidence                    011122335689999999988877766      6778899999999999999999988888777543  257


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++...+.....                 ++++++||++|.|+++++++|.+.+
T Consensus       114 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  169 (181)
T 3tw8_B          114 VCRILVGNKNDDPERKVVETEDAYKFAGQMG-----------------IQLFETSAKENVNVEEMFNCITELV  169 (181)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchhcccCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999865  345667777777665                 7899999999999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.5e-26  Score=173.21  Aligned_cols=160  Identities=19%  Similarity=0.231  Sum_probs=119.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|+|||||+++|++..+. ...||.+.....                                      
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------   57 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV--------------------------------------   57 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEE--------------------------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEE--------------------------------------
Confidence            46689999999999999999999987654 233333211100                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~  176 (249)
                              ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+. .|+..+...  ..
T Consensus        58 --------~~~~~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~  121 (194)
T 2atx_A           58 --------SVTVGGKQYLLGLYDTAGQEDYDRLRP------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--AP  121 (194)
T ss_dssp             --------EEESSSCEEEEEEECCCCSSSSTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--ST
T ss_pred             --------EEEECCEEEEEEEEECCCCcchhHHHH------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence                    001122335688999999998887766      6778899999999999999998876 565555432  24


Q ss_pred             CCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871          177 SCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR  242 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  242 (249)
                      ++|+++|+||+|+.+.              ...++..++.+...                ..++++|||++|.|++++++
T Consensus       122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~g~gi~~l~~  185 (194)
T 2atx_A          122 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG----------------ACCYVECSALTQKGLKTVFD  185 (194)
T ss_dssp             TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT----------------CSCEEECCTTTCTTHHHHHH
T ss_pred             CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC----------------CcEEEEeeCCCCCCHHHHHH
Confidence            8999999999999752              44555666555544                13899999999999999999


Q ss_pred             HHhhhc
Q psy871          243 WLANYI  248 (249)
Q Consensus       243 ~l~~~i  248 (249)
                      +|.+.+
T Consensus       186 ~l~~~i  191 (194)
T 2atx_A          186 EAIIAI  191 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.95  E-value=2e-26  Score=173.83  Aligned_cols=161  Identities=24%  Similarity=0.256  Sum_probs=123.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ...++|+|+|++|||||||+++|++..+. ...+|.+......                                     
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   48 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK-------------------------------------   48 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEE-------------------------------------
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEE-------------------------------------
Confidence            35679999999999999999999987764 3334443222111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+......+.+||+||++.+.....      .++..+|++++|+|++++.++..+..|+..+... ...+
T Consensus        49 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~  113 (203)
T 1zbd_A           49 --------TIYRNDKRIKLQIWDTAGLERYRTITT------AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDN  113 (203)
T ss_dssp             --------EEEETTEEEEEEEEEECCSGGGHHHHH------TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCSS
T ss_pred             --------EEEECCeEEEEEEEECCCchhhcchHH------HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence                    011122345689999999988877666      6778999999999999999998888777776443 2357


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i  169 (203)
T 1zbd_A          114 AQVLLVGNKCDMEDERVVSSERGRQLADHLG-----------------FEFFEASAKDNINVKQTFERLVDVI  169 (203)
T ss_dssp             CEEEEEEECTTCTTSCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             CCEEEEEECcccCcccccCHHHHHHHHHHCC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999976  345667777777665                 7899999999999999999998754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=7.1e-27  Score=175.34  Aligned_cols=160  Identities=20%  Similarity=0.234  Sum_probs=121.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++++|+++|++|||||||+++|++..+. ...||.+.....                                      
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------   67 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH--------------------------------------   67 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE--------------------------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEE--------------------------------------
Confidence            56789999999999999999999987654 233333311100                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++. .....      .++..+|++++|+|++++.++..+..++..+.......+
T Consensus        68 --------~~~~~~~~~~~~l~Dt~G~~~-~~~~~------~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~  132 (196)
T 2atv_A           68 --------QATIDDEVVSMEILDTAGQED-TIQRE------GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN  132 (196)
T ss_dssp             --------EEEETTEEEEEEEEECCCCCC-CHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSC
T ss_pred             --------EEEECCEEEEEEEEECCCCCc-ccchh------hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCC
Confidence                    011122345688999999886 33333      556789999999999999999988877777765444468


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc-chHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ-GYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-gv~~l~~~l~~~i  248 (249)
                      +|+++|+||+|+.+  ....++..++.+...                 +++++|||++|. |+++++++|.+.+
T Consensus       133 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~~gi~~l~~~l~~~i  189 (196)
T 2atv_A          133 VTLILVGNKADLDHSRQVSTEEGEKLATELA-----------------CAFYECSACTGEGNITEIFYELCREV  189 (196)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHHhC-----------------CeEEEECCCcCCcCHHHHHHHHHHHH
Confidence            99999999999975  455677777776655                 789999999999 9999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.95  E-value=1.4e-26  Score=174.45  Aligned_cols=164  Identities=18%  Similarity=0.200  Sum_probs=116.8

Q ss_pred             cccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      .++...++||+++|++|||||||+++|.+..+. ...||.+......                                 
T Consensus        19 ~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~---------------------------------   65 (201)
T 2gco_A           19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD---------------------------------   65 (201)
T ss_dssp             ---CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE---------------------------------
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE---------------------------------
Confidence            456677899999999999999999999987654 2233332111000                                 


Q ss_pred             ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhc
Q psy871           94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTD  172 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~  172 (249)
                                   ..+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+. .++..+ ..
T Consensus        66 -------------~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-~~  125 (201)
T 2gco_A           66 -------------IEVDGKQVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KH  125 (201)
T ss_dssp             -------------EEETTEEEEEEEECCCCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHH-HH
T ss_pred             -------------EEECCEEEEEEEEECCCchhHHHHHH------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHH-HH
Confidence                         01122345689999999998877766      6778899999999999999998874 444444 32


Q ss_pred             cCCCCCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871          173 ESLASCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG  238 (249)
Q Consensus       173 ~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  238 (249)
                      . ..+.|+++|+||+|+...              ...++..++.+...                ..++++|||++|.|++
T Consensus       126 ~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~SA~~g~gi~  188 (201)
T 2gco_A          126 F-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRIS----------------AFGYLECSAKTKEGVR  188 (201)
T ss_dssp             H-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTCTTHH
T ss_pred             h-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCC----------------CcEEEEeeCCCCCCHH
Confidence            2 258999999999999764              23334444444433                1389999999999999


Q ss_pred             HHHHHHhhhc
Q psy871          239 DGFRWLANYI  248 (249)
Q Consensus       239 ~l~~~l~~~i  248 (249)
                      +++++|.+.+
T Consensus       189 ~l~~~i~~~~  198 (201)
T 2gco_A          189 EVFEMATRAG  198 (201)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.95  E-value=1.7e-26  Score=174.53  Aligned_cols=161  Identities=22%  Similarity=0.246  Sum_probs=123.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+|+|++|||||||+++|++..+. ...||.+......                                     
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   48 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIK-------------------------------------   48 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEE-------------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEE-------------------------------------
Confidence            45689999999999999999999987765 2334433222111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+..|+..+... ...+
T Consensus        49 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~-~~~~  113 (206)
T 2bcg_Y           49 --------TVELDGKTVKLQIWDTAGQERFRTITS------SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY-ATST  113 (206)
T ss_dssp             --------EEEETTEEEEEEEECCTTTTTTTCCCG------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTT
T ss_pred             --------EEEECCEEEEEEEEeCCChHHHHHHHH------HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence                    011122345689999999988877766      6778899999999999999999888777776543 2357


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~i  169 (206)
T 2bcg_Y          114 VLKLLVGNKCDLKDKRVVEYDVAKEFADANK-----------------MPFLETSALDSTNVEDAFLTMARQI  169 (206)
T ss_dssp             CEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999976  345666766666544                 7899999999999999999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.95  E-value=1.4e-26  Score=172.13  Aligned_cols=161  Identities=19%  Similarity=0.179  Sum_probs=122.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|||||||+++|++..+. ...++.+......                                     
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------   50 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSK-------------------------------------   50 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEE-------------------------------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE-------------------------------------
Confidence            45789999999999999999999987665 2333332111111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+... ...+
T Consensus        51 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~  115 (186)
T 2bme_A           51 --------IINVGGKYVKLQIWDTAGQERFRSVTR------SYYRGAAGALLVYDITSRETYNALTNWLTDARML-ASQN  115 (186)
T ss_dssp             --------EEEETTEEEEEEEEEECCSGGGHHHHH------TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred             --------EEEECCEEEEEEEEeCCCcHHHHHHHH------HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence                    011122234688999999998877666      6778899999999999999999888777766443 2368


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+..  ....++..++.+...                 ++++++||++|.|++++++++.+.+
T Consensus       116 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  171 (186)
T 2bme_A          116 IVIILCGNKKDLDADREVTFLEASRFAQENE-----------------LMFLETSALTGENVEEAFVQCARKI  171 (186)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEecCCCCCCHHHHHHHHHHHH
Confidence            99999999999964  455667777666554                 7899999999999999999998754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.95  E-value=9.5e-27  Score=172.93  Aligned_cols=161  Identities=16%  Similarity=0.201  Sum_probs=116.9

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .+++++|+++|++|||||||+++|++..+. ...+|.+.....                                     
T Consensus         2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-------------------------------------   44 (186)
T 1mh1_A            2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-------------------------------------   44 (186)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEE-------------------------------------
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEE-------------------------------------
Confidence            467899999999999999999999987654 223333211100                                     


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESL  175 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~  175 (249)
                               ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++.... .++..+...  .
T Consensus        45 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~  107 (186)
T 1mh1_A           45 ---------NVMVDGKPVNLGLWDTAGQEDYDRLRP------LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH--C  107 (186)
T ss_dssp             ---------EEEETTEEEEEEEECCCCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--S
T ss_pred             ---------EEEECCEEEEEEEEECCCCHhHHHHHH------HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHh--C
Confidence                     011123345688999999998877666      5678899999999999999998876 455555332  2


Q ss_pred             CCCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871          176 ASCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF  241 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  241 (249)
                      .+.|+++|+||+|+.+.              ...++..++.+...                ..++++|||++|.|+++++
T Consensus       108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~g~gi~~l~  171 (186)
T 1mh1_A          108 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG----------------AVKYLECSALTQRGLKTVF  171 (186)
T ss_dssp             TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTCTTHHHHH
T ss_pred             CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC----------------CcEEEEecCCCccCHHHHH
Confidence            48999999999999653              23344444444333                1389999999999999999


Q ss_pred             HHHhhhc
Q psy871          242 RWLANYI  248 (249)
Q Consensus       242 ~~l~~~i  248 (249)
                      ++|.+.+
T Consensus       172 ~~l~~~~  178 (186)
T 1mh1_A          172 DEAIRAV  178 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.95  E-value=6.1e-27  Score=174.42  Aligned_cols=161  Identities=22%  Similarity=0.233  Sum_probs=119.0

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+..||+++|++|||||||+++|++..+. ...||.+.....                                     
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~-------------------------------------   60 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSS-------------------------------------   60 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEE-------------------------------------
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeE-------------------------------------
Confidence            456789999999999999999999987754 333443311100                                     


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--  174 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--  174 (249)
                               ...+.+....+.+||++|++.+... .      .++..+|++++|+|++++.++..+..|+..+.....  
T Consensus        61 ---------~~~~~~~~~~l~i~Dt~G~~~~~~~-~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~  124 (187)
T 3c5c_A           61 ---------EETVDHQPVHLRVMDTADLDTPRNC-E------RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKET  124 (187)
T ss_dssp             ---------EEEETTEEEEEEEEECCC---CCCT-H------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------EEEECCEEEEEEEEECCCCCcchhH-H------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhcc
Confidence                     0111233456889999999877653 2      356779999999999999999998888777754321  


Q ss_pred             CCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeee-ccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSV-LMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~g~gv~~l~~~l~~~i  248 (249)
                      ..+.|+++|+||+|+.+  ....++..++.+..+                 +++++||| ++|.|+++++++|.+.+
T Consensus       125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sa~~~g~gv~~lf~~l~~~i  184 (187)
T 3c5c_A          125 QRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG-----------------CLFFEVSACLDFEHVQHVFHEAVREA  184 (187)
T ss_dssp             CCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC-----------------CcEEEEeecCccccHHHHHHHHHHHH
Confidence            25799999999999964  456677888777766                 78999999 89999999999998765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.95  E-value=2.9e-26  Score=172.88  Aligned_cols=195  Identities=17%  Similarity=0.171  Sum_probs=124.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++++|+|+|++|||||||+++|++..+. ...||.+.......+........ ...+. ....-+..+...       .
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~-------~   75 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIK-NNSNN-EKNNNINSINDD-------N   75 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccc-ccccc-cccccccccccc-------c
Confidence            35689999999999999999999998765 34455553332221110000000 00000 000000000000       0


Q ss_pred             cccceece-eccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           98 LHPTRRVW-KDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~-~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      ........ ...-......+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+...   .
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~  146 (208)
T 3clv_A           76 NVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVP------LYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---S  146 (208)
T ss_dssp             ---------CCCTTTCEEEEEEEECTTGGGCTTTHH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---S
T ss_pred             ccccccccccccCccceeEEEEEECCCcHHHHHHHH------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---C
Confidence            00000000 000111236789999999988877766      6678899999999999999999888788777654   3


Q ss_pred             CCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..|+++|+||+|+.. ....+++.++++...                 ++++++||++|.|+++++++|.+.+
T Consensus       147 ~~piilv~NK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~  202 (208)
T 3clv_A          147 NYIIILVANKIDKNKFQVDILEVQKYAQDNN-----------------LLFIQTSAKTGTNIKNIFYMLAEEI  202 (208)
T ss_dssp             CCEEEEEEECTTCC-CCSCHHHHHHHHHHTT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCcccccCCHHHHHHHHHHcC-----------------CcEEEEecCCCCCHHHHHHHHHHHH
Confidence            499999999999432 456778888777655                 7999999999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=4.5e-27  Score=173.52  Aligned_cols=164  Identities=17%  Similarity=0.156  Sum_probs=121.2

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      -.+++++|+++|++|||||||+++|++..+. ...||.+......                                   
T Consensus         2 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~-----------------------------------   46 (178)
T 2hxs_A            2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLR-----------------------------------   46 (178)
T ss_dssp             CCCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEE-----------------------------------
T ss_pred             CCCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEE-----------------------------------
Confidence            3567899999999999999999999876654 2223333111111                                   


Q ss_pred             CCcccceeceeccccc-cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           96 PTLHPTRRVWKDYFPA-VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~-~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                                ...+.+ ....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..|+..+.....
T Consensus        47 ----------~~~~~~~~~~~~~~~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  110 (178)
T 2hxs_A           47 ----------RITLPGNLNVTLQIWDIGGQTIGGKMLD------KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSE  110 (178)
T ss_dssp             ----------EEEETTTEEEEEEEEECTTCCTTCTTHH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHH
T ss_pred             ----------EEEeCCCCEEEEEEEECCCCccccchhh------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc
Confidence                      000111 235789999999998877766      567889999999999999999888777766643211


Q ss_pred             -CCCCc-EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 -LASCP-VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 -~~~~p-~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ....| +++|+||+|+.+  ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       111 ~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  171 (178)
T 2hxs_A          111 ESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG-----------------FSSHFVSAKTGDSVFLCFQKVAAEI  171 (178)
T ss_dssp             HHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC-----------------CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence             12455 899999999975  355677777776655                 7899999999999999999998764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=1e-26  Score=174.94  Aligned_cols=161  Identities=18%  Similarity=0.195  Sum_probs=115.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+|+|++|||||||+++|++..+. ...+|.+......                                     
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   68 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMK-------------------------------------   68 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEE-------------------------------------
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEE-------------------------------------
Confidence            45789999999999999999999987654 2233333211111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..|+..+.. ....+
T Consensus        69 --------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~-~~~~~  133 (199)
T 2p5s_A           69 --------TLIVDGERTVLQLWDTAGQERFRSIAK------SYFRKADGVLLLYDVTCEKSFLNIREWVDMIED-AAHET  133 (199)
T ss_dssp             --------EEEETTEEEEEEEEECTTCTTCHHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH-HC---
T ss_pred             --------EEEECCEEEEEEEEECCCCcchhhhHH------HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHH-hcCCC
Confidence                    011223345689999999988877666      567789999999999999999988877766543 23357


Q ss_pred             CcEEEEEecCCCC--------CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKH--------GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.        .....++..++.+...                 ++++++||++|.|+++++.+|.+.+
T Consensus       134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~SA~~g~gv~el~~~l~~~i  195 (199)
T 2p5s_A          134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-----------------ALFCETSAKDGSNIVEAVLHLAREV  195 (199)
T ss_dssp             CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccccccccccccccCHHHHHHHHHHcC-----------------CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            9999999999985        2345566666666555                 7899999999999999999998865

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.95  E-value=2.7e-27  Score=175.62  Aligned_cols=161  Identities=22%  Similarity=0.243  Sum_probs=96.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|||||||+++|++..+. ...||.+......                                     
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   48 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIR-------------------------------------   48 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEE-------------------------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEE-------------------------------------
Confidence            35689999999999999999999865543 1122222111100                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..|+..+... ...+
T Consensus        49 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~  113 (183)
T 2fu5_C           49 --------TIELDGKRIKLQIWDTAGQERFRTITT------AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASAD  113 (183)
T ss_dssp             --------EEEETTEEEEEEEEEC---------CC------TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTT
T ss_pred             --------EEEECCEEEEEEEEcCCCChhhhhhHH------HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence                    011123345789999999988776655      6678899999999999999999888777776543 2357


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       114 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~i  169 (183)
T 2fu5_C          114 VEKMILGNKCDVNDKRQVSKERGEKLALDYG-----------------IKFMETSAKANINVENAFFTLARDI  169 (183)
T ss_dssp             CEEEEEEEC--CCSCCCSCHHHHHHHHHHHT-----------------CEEEECCC---CCHHHHHHHHHHHH
T ss_pred             CCEEEEEECccCCccCcCCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999975  445677777777665                 7899999999999999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=3.1e-26  Score=173.29  Aligned_cols=162  Identities=15%  Similarity=0.167  Sum_probs=114.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .+.+||+|+|.+|||||||++++++....  ...++.+......                                    
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~------------------------------------   78 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYER------------------------------------   78 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEE------------------------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEE------------------------------------
Confidence            34579999999999999999999865432  2122222111000                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                               ...+.+....+.+|||+|.+.. .....      .++..++++++|+|+++..+|..+..|+..+......
T Consensus        79 ---------~i~~~~~~~~l~~~Dt~g~~~~~~~l~~------~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~  143 (211)
T 2g3y_A           79 ---------TLMVDGESATIILLDMWENKGENEWLHD------HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT  143 (211)
T ss_dssp             ---------EEEETTEEEEEEEECCTTTTHHHHHHHH------CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG
T ss_pred             ---------EEEECCeeeEEEEeecCCCcchhhhHHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence                     0112233446789999997763 22222      4567799999999999999999888777766543233


Q ss_pred             CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .++|+++|+||+|+.+  ....++...+.....                 +++++|||++|.|++++|++|.+.+
T Consensus       144 ~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-----------------~~~~e~SAk~g~~v~elf~~l~~~i  201 (211)
T 2g3y_A          144 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-----------------CKFIETSAAVQHNVKELFEGIVRQV  201 (211)
T ss_dssp             TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5799999999999964  445566555555544                 7899999999999999999998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.5e-26  Score=173.02  Aligned_cols=162  Identities=19%  Similarity=0.215  Sum_probs=123.4

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+.++|+|+|++|||||||+++|++..+. ...+|.+......                                    
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~------------------------------------   65 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTR------------------------------------   65 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEE------------------------------------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE------------------------------------
Confidence            356789999999999999999999987765 2333333221111                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                               ...+......+.+||+||++++.....      .++..+|++++|+|++++.++..+..++..+... ...
T Consensus        66 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~-~~~  129 (193)
T 2oil_A           66 ---------TVMLGTAAVKAQIWDTAGLERYRAITS------AYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH-AEA  129 (193)
T ss_dssp             ---------EEEETTEEEEEEEEEESCCCTTCTTHH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTT-SCT
T ss_pred             ---------EEEECCEEEEEEEEeCCCchhhhhhhH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCC
Confidence                     011123345689999999988877766      5678899999999999999998888777777543 235


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+..  ....++...+.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       130 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i  186 (193)
T 2oil_A          130 TIVVMLVGNKSDLSQAREVPTEEARMFAENNG-----------------LLFLETSALDSTNVELAFETVLKEI  186 (193)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCcccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            799999999999975  445667777666554                 7899999999999999999998754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.95  E-value=2.9e-26  Score=169.66  Aligned_cols=163  Identities=26%  Similarity=0.272  Sum_probs=112.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|||||||+++|++..+. ...||.+.......                                    
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------------------------------------   49 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKE------------------------------------   49 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEE------------------------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEE------------------------------------
Confidence            45789999999999999999999987654 23333332221110                                    


Q ss_pred             cccceeceecccc-ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--
Q psy871           98 LHPTRRVWKDYFP-AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--  174 (249)
Q Consensus        98 ~~~~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--  174 (249)
                               ..+. .....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.....  
T Consensus        50 ---------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  114 (182)
T 1ky3_A           50 ---------VTVDGDKVATMQVWDTAGQERFQSLGV------AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN  114 (182)
T ss_dssp             ---------ECCSSSCCEEEEEECCC----------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS
T ss_pred             ---------EEEcCCcEEEEEEEECCCChHhhhhhH------HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhccc
Confidence                     0111 2245689999999988877666      677889999999999999999988878777754332  


Q ss_pred             -CCCCcEEEEEecCCCCC---CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 -LASCPVLILGNKIDKHG---AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 -~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ..+.|+++|+||+|+..   ....++..++.+...                ..+++++||++|.|+++++++|.+.+
T Consensus       115 ~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~l~~~~  176 (182)
T 1ky3_A          115 SPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG----------------DIPLFLTSAKNAINVDTAFEEIARSA  176 (182)
T ss_dssp             CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT----------------SCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEECCccccccccCCHHHHHHHHHhcC----------------CCeEEEEecCCCCCHHHHHHHHHHHH
Confidence             25789999999999954   235666666665321                27899999999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=4.3e-27  Score=175.80  Aligned_cols=162  Identities=22%  Similarity=0.255  Sum_probs=124.3

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ....+||+|+|++|||||||+++|++..+. ...++.+......                                    
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~------------------------------------   63 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVK------------------------------------   63 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEE------------------------------------
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEE------------------------------------
Confidence            356789999999999999999999876654 2222222111111                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                               ..........+.+||+||++.+.....      .++..+|++++|+|++++.++..+..|+..+.. ....
T Consensus        64 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~  127 (191)
T 3dz8_A           64 ---------TVYRHEKRVKLQIWDTAGQERYRTITT------AYYRGAMGFILMYDITNEESFNAVQDWATQIKT-YSWD  127 (191)
T ss_dssp             ---------EEEETTTTEEEEEECHHHHHHCHHHHH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH-HSCT
T ss_pred             ---------EEEECCEEEEEEEEeCCChHHHHHHHH------HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHH-hcCC
Confidence                     111233456799999999988877766      667889999999999999999988877777654 3346


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.+  ....++...+.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       128 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i  184 (191)
T 3dz8_A          128 NAQVILVGNKCDMEEERVVPTEKGQLLAEQLG-----------------FDFFEASAKENISVRQAFERLVDAI  184 (191)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            899999999999965  456677777777666                 7899999999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.95  E-value=7.6e-27  Score=176.30  Aligned_cols=168  Identities=15%  Similarity=0.194  Sum_probs=115.5

Q ss_pred             hhcccccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcC
Q psy871           11 VLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD   89 (249)
Q Consensus        11 ~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~   89 (249)
                      .+.-+...++++||+++|++|||||||+++|+...+. ...+|.+.....                              
T Consensus        20 ~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~------------------------------   69 (204)
T 4gzl_A           20 HMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA------------------------------   69 (204)
T ss_dssp             ----------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEE------------------------------
T ss_pred             HHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEE------------------------------
Confidence            3344556688999999999999999999999977654 223333211000                              


Q ss_pred             CcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHH
Q psy871           90 RLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQC  168 (249)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~  168 (249)
                                      ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+. .++..
T Consensus        70 ----------------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  127 (204)
T 4gzl_A           70 ----------------NVMVDGKPVNLGLWDTAGLEDYDRLRP------LSYPQTDVFLICFSLVSPASFENVRAKWYPE  127 (204)
T ss_dssp             ----------------EEECC-CEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHH
T ss_pred             ----------------EEEECCEEEEEEEEECCCchhhHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence                            011223345677999999998887776      6778999999999999999998886 45555


Q ss_pred             HHhccCCCCCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc
Q psy871          169 LLTDESLASCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR  234 (249)
Q Consensus       169 ~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  234 (249)
                      +... . .+.|+++|+||+|+.+.              ...++...+.+...                ..++++|||++|
T Consensus       128 ~~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~SA~~g  189 (204)
T 4gzl_A          128 VRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG----------------AVKYLECSALTQ  189 (204)
T ss_dssp             HHHH-C-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTC
T ss_pred             HHHh-C-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC----------------CcEEEEeeCCCC
Confidence            4332 2 68999999999999763              33344444444433                246999999999


Q ss_pred             cchHHHHHHHhhhc
Q psy871          235 QGYGDGFRWLANYI  248 (249)
Q Consensus       235 ~gv~~l~~~l~~~i  248 (249)
                      .|+++++++|.+.+
T Consensus       190 ~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          190 RGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.9e-26  Score=173.18  Aligned_cols=161  Identities=14%  Similarity=0.228  Sum_probs=120.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|||||||+++|++..+. ...||.+......                                     
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   48 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQV-------------------------------------   48 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEE-------------------------------------
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEE-------------------------------------
Confidence            45689999999999999999999987654 2333333111110                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC-CC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES-LA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~  176 (249)
                               .........+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+..... ..
T Consensus        49 ---------~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  113 (199)
T 2gf0_A           49 ---------ISCDKSVCTLQITDTTGSHQFPAMQR------LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE  113 (199)
T ss_dssp             ---------EEETTEEEEEEEEECCGGGSCHHHHH------HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGG
T ss_pred             ---------EEECCEEEEEEEEeCCChHHhHHHHH------HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCC
Confidence                     01122344688999999988877666      556789999999999999999888776655543221 24


Q ss_pred             CCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.. ....++...+.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       114 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  169 (199)
T 2gf0_A          114 DIPVMLVGNKCDETQREVDTREAQAVAQEWK-----------------CAFMETSAKMNYNVKELFQELLTLE  169 (199)
T ss_dssp             GSCEEEEEECTTCSSCSSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             CCCEEEEEECccCCccccCHHHHHHHHHHhC-----------------CeEEEEecCCCCCHHHHHHHHHHHH
Confidence            789999999999976 345666666666655                 7899999999999999999998765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=172.83  Aligned_cols=162  Identities=17%  Similarity=0.212  Sum_probs=117.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+++|++|||||||+++|++..+. ...+|.+......                                     
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   66 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIK-------------------------------------   66 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEE-------------------------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEE-------------------------------------
Confidence            45679999999999999999999876654 2233333211111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..|+..+. .....+
T Consensus        67 --------~~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~-~~~~~~  131 (192)
T 2il1_A           67 --------TVELRGKKIRLQIWDTAGQERFNSITS------AYYRSAKGIILVYDITKKETFDDLPKWMKMID-KYASED  131 (192)
T ss_dssp             --------EEEETTEEEEEEEEEECCSGGGHHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHH-HHSCTT
T ss_pred             --------EEEECCeEEEEEEEeCCCcHHHHHHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH-HhcCCC
Confidence                    011122345689999999988877666      56678999999999999999988876665553 333457


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++..++.+...                ..+++++||++|.|+++++++|.+.+
T Consensus       132 ~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~----------------~~~~~~~SA~~g~gi~~l~~~l~~~i  188 (192)
T 2il1_A          132 AELLLVGNKLDCETDREITRQQGEKFAQQIT----------------GMRFCEASAKDNFNVDEIFLKLVDDI  188 (192)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHTST----------------TCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHhcC----------------CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999965  345566666665431                27899999999999999999998764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.94  E-value=1.1e-26  Score=174.87  Aligned_cols=162  Identities=20%  Similarity=0.186  Sum_probs=117.8

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+.++|+|+|++|||||||+++|++..+. ...+|.+......                                    
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~------------------------------------   65 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSR------------------------------------   65 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEE------------------------------------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEE------------------------------------
Confidence            356789999999999999999999876654 2223322111111                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                               ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+... ...
T Consensus        66 ---------~~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~  129 (200)
T 2o52_A           66 ---------VVNVGGKTVKLQIWDTAGQERFRSVTR------SYYRGAAGALLVYDITSRETYNSLAAWLTDARTL-ASP  129 (200)
T ss_dssp             ---------EEEETTEEEEEEEECCTTHHHHSCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-TCT
T ss_pred             ---------EEEECCeeeEEEEEcCCCcHhHHHHHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCC
Confidence                     011122335789999999888776665      5678899999999999999999888787776543 236


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+..  ....++..++.+...                 +++++|||++|.|+++++++|.+.+
T Consensus       130 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~SA~~g~gi~~l~~~l~~~i  186 (200)
T 2o52_A          130 NIVVILCGNKKDLDPEREVTFLEASRFAQENE-----------------LMFLETSALTGENVEEAFLKCARTI  186 (200)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCcccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            799999999999964  445667776666554                 7899999999999999999998764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.94  E-value=2.6e-26  Score=173.58  Aligned_cols=163  Identities=20%  Similarity=0.202  Sum_probs=120.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+|+|++|||||||+++|++..+. ...+|.+......                                     
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   48 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK-------------------------------------   48 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE-------------------------------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE-------------------------------------
Confidence            45789999999999999999999987654 2333333221111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC---
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES---  174 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~---  174 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.....   
T Consensus        49 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  114 (207)
T 1vg8_A           49 --------EVMVDDRLVTMQIWDTAGQERFQSLGV------AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD  114 (207)
T ss_dssp             --------EEESSSCEEEEEEEEECSSGGGSCSCC------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSS
T ss_pred             --------EEEECCEEEEEEEEeCCCcHHHHHhHH------HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhccccc
Confidence                    011122345689999999988776665      667889999999999999999888877777654322   


Q ss_pred             CCCCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..+.|+++|+||+|+.. ....++..++....                ...+++++||++|.|+++++++|.+.+
T Consensus       115 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~  173 (207)
T 1vg8_A          115 PENFPFVVLGNKIDLENRQVATKRAQAWCYSK----------------NNIPYFETSAKEAINVEQAFQTIARNA  173 (207)
T ss_dssp             GGGSCEEEEEECTTSSCCCSCHHHHHHHHHHT----------------TSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCcccccCHHHHHHHHHhc----------------CCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            14789999999999975 34556666665522                127899999999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.9e-26  Score=173.51  Aligned_cols=164  Identities=16%  Similarity=0.183  Sum_probs=114.6

Q ss_pred             cccceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      +-+.+++++|+++|++|||||||+++|++..+.. ..||.+.....                                  
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----------------------------------   64 (207)
T 2fv8_A           19 YFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA----------------------------------   64 (207)
T ss_dssp             CGGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE----------------------------------
T ss_pred             ccccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE----------------------------------
Confidence            3445778899999999999999999999876542 22222211100                                  


Q ss_pred             ccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhc
Q psy871           94 PVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTD  172 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~  172 (249)
                                  ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+ ..++..+...
T Consensus        65 ------------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  126 (207)
T 2fv8_A           65 ------------DIEVDGKQVELALWDTAGQEDYDRLRP------LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF  126 (207)
T ss_dssp             ------------EEEETTEEEEEEEEECTTCTTCTTTGG------GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH
T ss_pred             ------------EEEECCEEEEEEEEECCCcHHHHHHHH------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence                        001122345689999999998877666      667889999999999999999887 3444444332


Q ss_pred             cCCCCCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871          173 ESLASCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG  238 (249)
Q Consensus       173 ~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  238 (249)
                        ..+.|+++|+||+|+...              ...++...+.+...                ..++++|||++|.|++
T Consensus       127 --~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~SA~~g~gi~  188 (207)
T 2fv8_A          127 --CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ----------------AYDYLECSAKTKEGVR  188 (207)
T ss_dssp             --STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTCTTHH
T ss_pred             --CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC----------------CCEEEEeeCCCCCCHH
Confidence              258999999999999753              22233333333322                1389999999999999


Q ss_pred             HHHHHHhhhc
Q psy871          239 DGFRWLANYI  248 (249)
Q Consensus       239 ~l~~~l~~~i  248 (249)
                      +++++|.+.+
T Consensus       189 el~~~l~~~i  198 (207)
T 2fv8_A          189 EVFETATRAA  198 (207)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.94  E-value=1.1e-26  Score=172.13  Aligned_cols=160  Identities=16%  Similarity=0.193  Sum_probs=110.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      +++.+|+++|++|+|||||++++.+..+. ...||.+.....                                      
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~--------------------------------------   47 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA--------------------------------------   47 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC--------------------------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE--------------------------------------
Confidence            56789999999999999999999876643 222222110000                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~  176 (249)
                              ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+. .|+..+...  ..
T Consensus        48 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~  111 (182)
T 3bwd_D           48 --------NVVVNGATVNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVSKKWIPELKHY--AP  111 (182)
T ss_dssp             --------CCC-------CEEECCCC-CTTTTTGG------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CT
T ss_pred             --------EEEECCEEEEEEEEECCCChhhhhhHH------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence                    001122344577999999998877766      6678899999999999999998876 455555332  24


Q ss_pred             CCcEEEEEecCCCCCC------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871          177 SCPVLILGNKIDKHGA------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL  244 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  244 (249)
                      +.|+++|+||+|+.+.            ...++..++.+...                ..++++|||++|.|+++++++|
T Consensus       112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~l  175 (182)
T 3bwd_D          112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG----------------APAYIECSSKSQENVKGVFDAA  175 (182)
T ss_dssp             TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT----------------CSEEEECCTTTCTTHHHHHHHH
T ss_pred             CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC----------------CCEEEEEECCCCCCHHHHHHHH
Confidence            8999999999998653            13455555555544                1389999999999999999999


Q ss_pred             hhhc
Q psy871          245 ANYI  248 (249)
Q Consensus       245 ~~~i  248 (249)
                      .+.+
T Consensus       176 ~~~i  179 (182)
T 3bwd_D          176 IRVV  179 (182)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.94  E-value=1.3e-26  Score=175.20  Aligned_cols=162  Identities=18%  Similarity=0.190  Sum_probs=94.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC--CCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD--RLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~--~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      +++++|+|+|++|||||||+++|++.  .+. ...+|.+......                                   
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~-----------------------------------   62 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVA-----------------------------------   62 (208)
T ss_dssp             EEEEEEEEC----------------------------------CE-----------------------------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEE-----------------------------------
Confidence            56789999999999999999999876  333 2223332111110                                   


Q ss_pred             CCcccceeceecccccc--ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           96 PTLHPTRRVWKDYFPAV--DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~--~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                                ...+.+.  ...+.+||+||++.+.....      .++..+|++++|+|++++.++..+..|+..+....
T Consensus        63 ----------~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  126 (208)
T 2yc2_C           63 ----------PVTIPDTTVSVELFLLDTAGSDLYKEQIS------QYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR  126 (208)
T ss_dssp             ----------EEECTTSSEEEEEEEEETTTTHHHHHHHS------TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred             ----------EEEECCcccEEEEEEEECCCcHHHHHHHH------HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence                      0111222  45789999999988877665      67788999999999999999999888887776543


Q ss_pred             C--CCCCcEEEEEecCCCCC---CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecc-ccchHHHHHHHhhh
Q psy871          174 S--LASCPVLILGNKIDKHG---AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLM-RQGYGDGFRWLANY  247 (249)
Q Consensus       174 ~--~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-g~gv~~l~~~l~~~  247 (249)
                      .  ..+.|+++|+||+|+..   ....+++.++.+...                 ++++++||++ |.|+++++++|.+.
T Consensus       127 ~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~gi~~l~~~i~~~  189 (208)
T 2yc2_C          127 PDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT-----------------LDFFDVSANPPGKDADAPFLSIATT  189 (208)
T ss_dssp             SCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT-----------------CEEEECCC-------CHHHHHHHHH
T ss_pred             cccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC-----------------CEEEEeccCCCCcCHHHHHHHHHHH
Confidence            2  25899999999999976   455677777777655                 7899999999 99999999999875


Q ss_pred             c
Q psy871          248 I  248 (249)
Q Consensus       248 i  248 (249)
                      +
T Consensus       190 ~  190 (208)
T 2yc2_C          190 F  190 (208)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.94  E-value=2.7e-26  Score=172.75  Aligned_cols=161  Identities=14%  Similarity=0.167  Sum_probs=113.7

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+.++|+++|++|||||||+++|++..+. ...||.+.....                                     
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-------------------------------------   59 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-------------------------------------   59 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEE-------------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEE-------------------------------------
Confidence            467889999999999999999999876643 222333211100                                     


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESL  175 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~  175 (249)
                               ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+. .|+..+...  .
T Consensus        60 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~  122 (201)
T 2q3h_A           60 ---------VVSVDGRPVRLQLCDTAGQDEFDKLRP------LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--C  122 (201)
T ss_dssp             ---------EEEETTEEEEEEEEECCCSTTCSSSGG------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--C
T ss_pred             ---------EEEECCEEEEEEEEECCCCHHHHHHhH------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--C
Confidence                     011122345688999999998877766      5678899999999999999998876 466555433  2


Q ss_pred             CCCcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871          176 ASCPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF  241 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  241 (249)
                      .+.|+++|+||+|+..              ....++...+.+...                ..++++|||++|.|+++++
T Consensus       123 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~g~gi~~l~  186 (201)
T 2q3h_A          123 PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK----------------AASYIECSALTQKNLKEVF  186 (201)
T ss_dssp             SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT----------------CSEEEECCTTTCTTHHHHH
T ss_pred             CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC----------------CcEEEEEecCCCCCHHHHH
Confidence            4899999999999964              234555666555544                1389999999999999999


Q ss_pred             HHHhhhc
Q psy871          242 RWLANYI  248 (249)
Q Consensus       242 ~~l~~~i  248 (249)
                      ++|.+.+
T Consensus       187 ~~l~~~~  193 (201)
T 2q3h_A          187 DAAIVAG  193 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.94  E-value=6.3e-27  Score=178.35  Aligned_cols=174  Identities=21%  Similarity=0.247  Sum_probs=123.7

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      -..+.++|+|+|++|||||||+++|++..+.. ..+|++....       ...+.+.+....                  
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~-------~~~~~~~~~~~~------------------   75 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFR-------EKRVVYNAQGPN------------------   75 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEE-------EEEEEEEC----------------------
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEE-------EEEEEECCcccc------------------
Confidence            34667899999999999999999999876542 2222221111       111111111000                  


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                       +         .........+.+||+||++++.....      .++..+|++++|+|++++.++..+..|+..+......
T Consensus        76 -~---------~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~  139 (217)
T 2f7s_A           76 -G---------SSGKAFKVHLQLWDTAGQERFRSLTT------AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC  139 (217)
T ss_dssp             -------------CCEEEEEEEEEEEESHHHHHHHHH------HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTT
T ss_pred             -c---------cccCceeEEEEEEECCCcHhHHhHHH------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCc
Confidence             0         00112245689999999988877666      6678899999999999999998887777666443333


Q ss_pred             CCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.|+++|+||+|+.+  ....++..++.+...                 +++++|||++|.|+++++++|.+.+
T Consensus       140 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gi~~l~~~l~~~i  197 (217)
T 2f7s_A          140 ENPDIVLIGNKADLPDQREVNERQARELADKYG-----------------IPYFETSAATGQNVEKAVETLLDLI  197 (217)
T ss_dssp             TCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCccccccccCHHHHHHHHHHCC-----------------CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999975  445677777776655                 7899999999999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.94  E-value=2.4e-26  Score=170.77  Aligned_cols=161  Identities=19%  Similarity=0.186  Sum_probs=117.9

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..++++|+++|++|||||||+++|.+..+. .+.||.+.....                                     
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~-------------------------------------   46 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-------------------------------------   46 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-------------------------------------
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-------------------------------------
Confidence            356789999999999999999999987664 233443211100                                     


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESL  175 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~  175 (249)
                               ...+......+.+||+||++.+.....      .++..+|++++|+|++++.++..+ ..|+..+...  .
T Consensus        47 ---------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~  109 (184)
T 1m7b_A           47 ---------SFEIDTQRIELSLWDTSGSPYYDNVRP------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--C  109 (184)
T ss_dssp             ---------EEECSSCEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--C
T ss_pred             ---------EEEECCEEEEEEEEECCCChhhhhhHH------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--C
Confidence                     001122345689999999998877766      567899999999999999999887 4555555332  2


Q ss_pred             CCCcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeec-cccchHHH
Q psy871          176 ASCPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL-MRQGYGDG  240 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~gv~~l  240 (249)
                      .+.|+++|+||+|+.+              ....++..++.+...                ..++++|||+ +|.|++++
T Consensus       110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sa~~~~~gi~~l  173 (184)
T 1m7b_A          110 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG----------------AATYIECSALQSENSVRDI  173 (184)
T ss_dssp             TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT----------------CSEEEECBTTTBHHHHHHH
T ss_pred             CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC----------------CcEEEEeeecCCCcCHHHH
Confidence            5799999999999973              345566666665543                2589999999 69999999


Q ss_pred             HHHHhhhc
Q psy871          241 FRWLANYI  248 (249)
Q Consensus       241 ~~~l~~~i  248 (249)
                      |+++.+.+
T Consensus       174 ~~~i~~~~  181 (184)
T 1m7b_A          174 FHVATLAC  181 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.94  E-value=3e-26  Score=174.30  Aligned_cols=160  Identities=16%  Similarity=0.204  Sum_probs=101.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++++|+++|++|||||||+++|++..+. ...||......                                       
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~---------------------------------------   72 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM---------------------------------------   72 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE---------------------------------------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE---------------------------------------
Confidence            56789999999999999999999876654 22233211100                                       


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~  176 (249)
                             ....+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+. .|+..+...  ..
T Consensus        73 -------~~~~~~~~~~~l~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~  137 (214)
T 2j1l_A           73 -------VNLQVKGKPVHLHIWDTAGQDDYDRLRP------LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CK  137 (214)
T ss_dssp             -------EEEEETTEEEEEEEEEC---------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CS
T ss_pred             -------EEEEECCEEEEEEEEECCCchhhhHHHH------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CC
Confidence                   0011122345688999999998877776      6678899999999999999998876 455555332  25


Q ss_pred             CCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871          177 SCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR  242 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  242 (249)
                      ++|+++|+||+|+...              ...++..++.+...                ..++++|||++|.|++++++
T Consensus       138 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~SA~~g~gi~el~~  201 (214)
T 2j1l_A          138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG----------------AVAYLECSARLHDNVHAVFQ  201 (214)
T ss_dssp             SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECBTTTTBSHHHHHH
T ss_pred             CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC----------------CCEEEEecCCCCCCHHHHHH
Confidence            7999999999999763              23344444444433                13899999999999999999


Q ss_pred             HHhhhc
Q psy871          243 WLANYI  248 (249)
Q Consensus       243 ~l~~~i  248 (249)
                      +|.+.+
T Consensus       202 ~l~~~~  207 (214)
T 2j1l_A          202 EAAEVA  207 (214)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.3e-26  Score=175.18  Aligned_cols=161  Identities=20%  Similarity=0.191  Sum_probs=117.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+|+|++|||||||+++|++..+. ...||.+......                                     
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   53 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATR-------------------------------------   53 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEE-------------------------------------
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEE-------------------------------------
Confidence            55789999999999999999999987765 2333333221111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+..|+..+... ...+
T Consensus        54 --------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~-~~~~  118 (223)
T 3cpj_B           54 --------TLEIEGKRIKAQIWDTAGQERYRAITS------AYYRGAVGALIVYDISKSSSYENCNHWLSELREN-ADDN  118 (223)
T ss_dssp             --------EEEETTEEEEEEEECCTTTTTTTCCCG------GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH-CC--
T ss_pred             --------EEEECCEEEEEEEEECCCccchhhhHH------HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCC
Confidence                    011122235689999999998877666      6778899999999999999999888777776543 2357


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+..  ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       119 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~i  174 (223)
T 3cpj_B          119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQ-----------------LLFTETSALNSENVDKAFEELINTI  174 (223)
T ss_dssp             CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred             CeEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999965  455667777666554                 7899999999999999999998765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=7.3e-26  Score=171.88  Aligned_cols=161  Identities=20%  Similarity=0.233  Sum_probs=120.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+|+|++|||||||+++|++..+. ...||.+......                                     
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------   60 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIK-------------------------------------   60 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEE-------------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEE-------------------------------------
Confidence            45689999999999999999999987654 3333333221111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+... ...+
T Consensus        61 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~  125 (213)
T 3cph_A           61 --------TVDINGKKVKLQLWDTAGQERFRTITT------AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH-ANDE  125 (213)
T ss_dssp             --------EEEETTEEEEEEEECCTTGGGGTCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-TTTC
T ss_pred             --------EEEECCEEEEEEEEeCCCcHHHHHHHH------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCC
Confidence                    011122235689999999988876665      5678899999999999999998888777776543 2357


Q ss_pred             CcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.. ....++..++.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       126 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~~  180 (213)
T 3cph_A          126 AQLLLVGNKSDMETRVVTADQGEALAKELG-----------------IPFIESSAKNDDNVNEIFFTLAKLI  180 (213)
T ss_dssp             SEEEEEEECTTCSSCCSCHHHHHHHHHHHT-----------------CCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCcccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999954 345566666666655                 6899999999999999999998754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.94  E-value=2.5e-26  Score=174.44  Aligned_cols=160  Identities=16%  Similarity=0.168  Sum_probs=117.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ++.++|+++|++|+|||||+++|.+..+. ...||.+......                                     
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   49 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-------------------------------------   49 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEE-------------------------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEE-------------------------------------
Confidence            35689999999999999999999987654 2334433111000                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~  176 (249)
                               ..+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+. .|+..+...  ..
T Consensus        50 ---------~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~  112 (212)
T 2j0v_A           50 ---------VAVDGQIVNLGLWDTAGQEDYSRLRP------LSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--AP  112 (212)
T ss_dssp             ---------EECSSCEEEEEEECCCCCCCCCC--C------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CT
T ss_pred             ---------EEECCEEEEEEEEECCCcHHHHHHHH------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence                     01223345789999999998877766      6778899999999999999998876 565555432  24


Q ss_pred             CCcEEEEEecCCCCCC----------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          177 SCPVLILGNKIDKHGA----------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      +.|+++|+||+|+.+.          ...++..++.+...                ..+++++||++|.|+++++++|.+
T Consensus       113 ~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~g~gi~~l~~~l~~  176 (212)
T 2j0v_A          113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG----------------AAAYIECSSKTQQNVKAVFDTAIK  176 (212)
T ss_dssp             TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT----------------CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC----------------CceEEEccCCCCCCHHHHHHHHHH
Confidence            8999999999999663          14556666665544                148999999999999999999987


Q ss_pred             hc
Q psy871          247 YI  248 (249)
Q Consensus       247 ~i  248 (249)
                      .+
T Consensus       177 ~~  178 (212)
T 2j0v_A          177 VV  178 (212)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.94  E-value=2.3e-25  Score=169.34  Aligned_cols=178  Identities=22%  Similarity=0.172  Sum_probs=112.5

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ..+.++|+++|++|||||||+++|++..+....++.......+                                     
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~-------------------------------------   46 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIY-------------------------------------   46 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEE-------------------------------------
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEE-------------------------------------
Confidence            4568899999999999999999999877654333322111111                                     


Q ss_pred             cccceeceecccccc-ceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChh-hhHhhHHHHHHHHhc--
Q psy871           98 LHPTRRVWKDYFPAV-DAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRE-RFEESKSELQCLLTD--  172 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~-~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~--  172 (249)
                                .+.+. ...+.+|||||++++.. ...      .++..+|++++|+|+++.. ++.....++..++..  
T Consensus        47 ----------~~~~~~~~~~~i~Dt~G~~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  110 (214)
T 2fh5_B           47 ----------KVNNNRGNSLTLIDLPGHESLRFQLLD------RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSM  110 (214)
T ss_dssp             ----------ECSSTTCCEEEEEECCCCHHHHHHHHH------HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------EecCCCccEEEEEECCCChhHHHHHHH------HHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhh
Confidence                      01111 35689999999998876 455      4578899999999999853 455555555555433  


Q ss_pred             cCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhccc----------------------ccCcccCCCCCCCCCceeEEEee
Q psy871          173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGL----------------------TTGKVATPRSEMSGRPIELFMCS  230 (249)
Q Consensus       173 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~S  230 (249)
                      ....+.|+++|+||+|+......++..+.++....                      .......+........+++++||
T Consensus       111 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S  190 (214)
T 2fh5_B          111 ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECS  190 (214)
T ss_dssp             TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECB
T ss_pred             hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEee
Confidence            12357999999999999876555555444432110                      00000000000000157899999


Q ss_pred             eccc------cchHHHHHHHhhhc
Q psy871          231 VLMR------QGYGDGFRWLANYI  248 (249)
Q Consensus       231 a~~g------~gv~~l~~~l~~~i  248 (249)
                      |++|      .|+++++++|.+.+
T Consensus       191 Ak~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          191 AKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             CC-------CCBCHHHHHHHHHHC
T ss_pred             ccCCCccccccChHHHHHHHHHhC
Confidence            9999      99999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.94  E-value=1.4e-25  Score=167.69  Aligned_cols=163  Identities=15%  Similarity=0.157  Sum_probs=110.6

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      .++.+||+++|++|||||||++++++....  ...++.+......                                   
T Consensus         3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------   47 (192)
T 2cjw_A            3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYER-----------------------------------   47 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEE-----------------------------------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEE-----------------------------------
Confidence            356789999999999999999999864322  1111111110000                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                                ...+.+....+.+||++|.+.. .....      .++..+|++++|+|+++..+|.....++..+.....
T Consensus        48 ----------~~~~~~~~~~l~~~Dt~~~~~~~~~~~~------~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~  111 (192)
T 2cjw_A           48 ----------TLMVDGESATIILLDMWENKGENEWLHD------HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ  111 (192)
T ss_dssp             ----------EEEETTEEEEEEEECCCCC----CTTGG------GHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT
T ss_pred             ----------EEEECCeEEEEEEEEeccCcchhhhHHH------hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence                      0112233445789999997652 22222      445679999999999999999988777766654333


Q ss_pred             CCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..+.|+++|+||+|+..  ....++...+.....                 .++++|||++|.|++++|++|.+.+
T Consensus       112 ~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-----------------~~~~e~SA~~g~~v~~lf~~l~~~~  170 (192)
T 2cjw_A          112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-----------------XKFIETSAAVQHNVKELFEGIVRQV  170 (192)
T ss_dssp             TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEechhhhccccccHHHHHHHHHHhC-----------------CceEEeccccCCCHHHHHHHHHHHH
Confidence            35799999999999964  344555554444433                 6899999999999999999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.94  E-value=7.4e-26  Score=170.93  Aligned_cols=160  Identities=19%  Similarity=0.194  Sum_probs=117.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.+||+++|++|||||||+++|++..+.. +.||.+.....                                      
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~--------------------------------------   67 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA--------------------------------------   67 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE--------------------------------------
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEE--------------------------------------
Confidence            456899999999999999999999877652 23343211100                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhh-HHHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEES-KSELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~  176 (249)
                              ...+.+....+.+||++|++.+.....      .++..+|++++|+|++++.++..+ ..|+..+...  ..
T Consensus        68 --------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~  131 (205)
T 1gwn_A           68 --------SFEIDTQRIELSLWDTSGSPYYDNVRP------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CP  131 (205)
T ss_dssp             --------EEESSSSEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CT
T ss_pred             --------EEEECCEEEEEEEEeCCCcHhhhHHHH------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CC
Confidence                    001123345689999999998877766      567889999999999999999887 4565555432  25


Q ss_pred             CCcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeec-cccchHHHH
Q psy871          177 SCPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL-MRQGYGDGF  241 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~g~gv~~l~  241 (249)
                      +.|+++|+||+|+.+              ....++..++.+...                ..++++|||+ +|.|++++|
T Consensus       132 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~SAk~~~~gv~~lf  195 (205)
T 1gwn_A          132 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG----------------AATYIECSALQSENSVRDIF  195 (205)
T ss_dssp             TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT----------------CSEEEECCTTTCHHHHHHHH
T ss_pred             CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC----------------CCEEEEeeeccCCcCHHHHH
Confidence            799999999999973              244555666665543                1589999999 689999999


Q ss_pred             HHHhhhc
Q psy871          242 RWLANYI  248 (249)
Q Consensus       242 ~~l~~~i  248 (249)
                      +.+.+.+
T Consensus       196 ~~l~~~~  202 (205)
T 1gwn_A          196 HVATLAC  202 (205)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.94  E-value=4.6e-26  Score=173.71  Aligned_cols=162  Identities=19%  Similarity=0.158  Sum_probs=118.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ..++||+++|++|||||||+++|++..+. ...+|.+.......         +                          
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~---------~--------------------------   53 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVT---------F--------------------------   53 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEE---------E--------------------------
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEE---------E--------------------------
Confidence            45789999999999999999999876654 22233332222110         0                          


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               ....+....+.+|||||++.+.....      .++..+|++++|+|+++..++..+..|+..+... ...+
T Consensus        54 ---------~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~  117 (218)
T 4djt_A           54 ---------LDDQGNVIKFNVWDTAGQEKKAVLKD------VYYIGASGAILFFDVTSRITCQNLARWVKEFQAV-VGNE  117 (218)
T ss_dssp             ---------EBTTSCEEEEEEEEECSGGGTSCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-HCSS
T ss_pred             ---------EeCCCcEEEEEEEecCCchhhchHHH------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCC
Confidence                     00011125689999999988877666      5567899999999999999999888777766543 2246


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++...+.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       118 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~g~gv~~l~~~l~~~~  173 (218)
T 4djt_A          118 APIVVCANKIDIKNRQKISKKLVMEVLKGKN-----------------YEYFEISAKTAHNFGLPFLHLARIF  173 (218)
T ss_dssp             SCEEEEEECTTCC----CCHHHHHHHTTTCC-----------------CEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CcEEEEecCCCCCHHHHHHHHHHHH
Confidence            89999999999975  344555555555444                 7899999999999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.94  E-value=1e-26  Score=177.76  Aligned_cols=162  Identities=18%  Similarity=0.190  Sum_probs=121.0

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      ..++++||+++|++|||||||+++++.+.+. ...+|.+......                                   
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~-----------------------------------   55 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL-----------------------------------   55 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEE-----------------------------------
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEE-----------------------------------
Confidence            4467789999999999999999996654433 3334444332222                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                ...+......+.+|||||++.+.....      .++..+|++++|+|++++.++..+..|+..+...  .
T Consensus        56 ----------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~  117 (221)
T 3gj0_A           56 ----------VFHTNRGPIKFNVWDTAGQEKFGGLRD------GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--C  117 (221)
T ss_dssp             ----------EEEETTEEEEEEEEEECSGGGTSCCCH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--S
T ss_pred             ----------EEEECCEEEEEEEEeCCChHHHhHHHH------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh--C
Confidence                      111223345789999999988877766      5677899999999999999999988888887654  2


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .++|+++|+||+|+.+.....+...+.+...                 +++++|||++|.|+++++++|.+.+
T Consensus       118 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~gi~~l~~~l~~~l  173 (221)
T 3gj0_A          118 ENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN-----------------LQYYDISAKSNYNFEKPFLWLARKL  173 (221)
T ss_dssp             TTCCEEEEEECTTSSSCSSCGGGCCHHHHHT-----------------CEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred             CCCCEEEEEECCccccccccHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5899999999999976433333333333333                 7899999999999999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.92  E-value=1.3e-24  Score=160.37  Aligned_cols=165  Identities=18%  Similarity=0.263  Sum_probs=110.3

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      +..+.++|+++|++|||||||+++|++..+.. ..++........                                   
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~-----------------------------------   48 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY-----------------------------------   48 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCC-----------------------------------
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEE-----------------------------------
Confidence            45678999999999999999999999876552 122221111110                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                  .+...+..+.+|||||++++.....      .++..+|++++|+|+++........ .+..+.    .
T Consensus        49 ------------~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~-~l~~~~----~  105 (178)
T 2lkc_A           49 ------------QVTVNDKKITFLDTPGHEAFTTMRA------RGAQVTDIVILVVAADDGVMPQTVE-AINHAK----A  105 (178)
T ss_dssp             ------------EEEETTEEEEESCCCSSSSSSCSCC------SSCCCCCEEEEEEETTCCCCHHHHH-HHHHHG----G
T ss_pred             ------------EEEeCCceEEEEECCCCHHHHHHHH------HHHhhCCEEEEEEECCCCCcHHHHH-HHHHHH----h
Confidence                        0111234578999999988877665      6778899999999998843222221 233332    2


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .++|+++|+||+|+.+. ..+++...++.....        ........+++++||++|.|+++++++|.+.+
T Consensus       106 ~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  169 (178)
T 2lkc_A          106 ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLV--------PEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS  169 (178)
T ss_dssp             GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCC--------BTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcC--------hhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence            57999999999999764 344555444332200        00011236899999999999999999998764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.92  E-value=8.9e-25  Score=163.89  Aligned_cols=164  Identities=11%  Similarity=0.151  Sum_probs=107.5

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ..+.+||+++|++|||||||++++.+.....  ++.+....                                       
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~---------------------------------------   55 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLEST---------------------------------------   55 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCC---------------------------------------
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccc---------------------------------------
Confidence            4678899999999999999999987643222  11111100                                       


Q ss_pred             cccceeceeccc-cccceEEEEEeCCCchhhhhhH---HHHhhhhccccccceEEEEEECCCh--hhhHhhHHHHHHHHh
Q psy871           98 LHPTRRVWKDYF-PAVDAIVFLVDTSDRERFEESK---SELQCLLTDESLASSIVFLVDTSDR--ERFEESKSELQCLLT  171 (249)
Q Consensus        98 ~~~~~~~~~~~~-~~~~~~~~v~D~~g~~~~~~~~---~~~~~~~~~~~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~  171 (249)
                          .......+ .+....+.+||++|++++....   .      .++..+|++++|+|+++.  .++..+..++.++..
T Consensus        56 ----~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~  125 (196)
T 3llu_A           56 ----NKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE------MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYK  125 (196)
T ss_dssp             ----CSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH------HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH
T ss_pred             ----cceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc------cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHh
Confidence                00000001 1334568999999998876665   4      566789999999999997  566666656665532


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCH---------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871          172 DESLASCPVLILGNKIDKHGAASE---------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR  242 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  242 (249)
                        ...+.|+++|+||+|+.+....         ++..++.+..             .....+++++|||++ .|++++|.
T Consensus       126 --~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~~e~Sa~~-~~v~~~f~  189 (196)
T 3llu_A          126 --VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG-------------LEKLHLSFYLTSIYD-HSIFEAFS  189 (196)
T ss_dssp             --HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT-------------CTTSCEEEEEECTTS-THHHHHHH
T ss_pred             --cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh-------------hhcCCcceEEEEech-hhHHHHHH
Confidence              2368999999999998762111         1112222211             011347899999999 99999999


Q ss_pred             HHhhhc
Q psy871          243 WLANYI  248 (249)
Q Consensus       243 ~l~~~i  248 (249)
                      .|.+.|
T Consensus       190 ~l~~~l  195 (196)
T 3llu_A          190 KVVQKL  195 (196)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998865

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.92  E-value=7.5e-27  Score=175.64  Aligned_cols=161  Identities=23%  Similarity=0.238  Sum_probs=108.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.+||+|+|++|||||||+++|++..+.. ..++.+.....                                      
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------   72 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKI--------------------------------------   72 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEE--------------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEE--------------------------------------
Confidence            356899999999999999999998655432 11111111111                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                             ....+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+..++..+.. ....+
T Consensus        73 -------~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~  138 (199)
T 3l0i_B           73 -------RTIELDGKTIKLQIWDTAGQERFRTITS------SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR-YASEN  138 (199)
T ss_dssp             -------EEEEETTEEEEEEEECCTTCTTCCCCSC------C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHS-CC-CC
T ss_pred             -------EEEEECCEEEEEEEEECCCcHhHHHHHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH-hccCC
Confidence                   0111223335689999999988877666      677889999999999999999998877777643 23357


Q ss_pred             CcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+.  ...++...+.+...                 ++++++||++|.|+++++++|.+.+
T Consensus       139 ~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~vSA~~g~gv~~l~~~l~~~l  194 (199)
T 3l0i_B          139 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-----------------IPFLETSAKNATNVEQSFMTMAAEI  194 (199)
T ss_dssp             SEEEEC-CCSSCC--CCCCSCC-CHHHHTTT-----------------CCBCCCCC---HHHHHHHHHHTTTT
T ss_pred             CCEEEEEECccCCccccCCHHHHHHHHHHcC-----------------CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            999999999999652  22233444444433                 6899999999999999999999875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=6e-25  Score=184.74  Aligned_cols=160  Identities=14%  Similarity=0.128  Sum_probs=107.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCc----------hhhhhhHHHHhh
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR----------ERFEESKSELQC  136 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~----------~~~~~~~~~~~~  136 (249)
                      .++.++|.+++|||++++++.........+..+.+.......+...+..+.+|||||.          +.+...+     
T Consensus       196 ~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~-----  270 (456)
T 4dcu_A          196 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR-----  270 (456)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH-----
T ss_pred             ceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH-----
Confidence            4678999999999999999997664433333444444443444445567999999993          4333322     


Q ss_pred             hhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccC
Q psy871          137 LLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVAT  214 (249)
Q Consensus       137 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~  214 (249)
                      .+.++..+|++++|+|+++....+..  ++...+..   .++|+++|+||+|+.+.  ...+++.+.++...        
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~~--~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~--------  337 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF--------  337 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC--------
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHHH--HHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc--------
Confidence            23467889999999999985443332  33343333   67999999999999763  33455555555432        


Q ss_pred             CCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          215 PRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       215 ~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                          ......+++++||++|.|++++++.+.+.+
T Consensus       338 ----~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~  367 (456)
T 4dcu_A          338 ----QFLDYAPILFMSALTKKRIHTLMPAIIKAS  367 (456)
T ss_dssp             ----GGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred             ----ccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence                011237899999999999999999988754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.86  E-value=7.4e-27  Score=176.32  Aligned_cols=162  Identities=15%  Similarity=0.197  Sum_probs=110.7

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      +..++++|+++|++|||||||+++|++..+. ...+|.+.....                                    
T Consensus        26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~------------------------------------   69 (204)
T 3th5_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA------------------------------------   69 (204)
Confidence            4467899999999999999999999866543 112221100000                                    


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDES  174 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~  174 (249)
                                ...+.+....+.+||+||++++.....      .++..+|++++|+|++++.++..+. .++..+...  
T Consensus        70 ----------~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~--  131 (204)
T 3th5_A           70 ----------NVMVDGKPVNLGLWDTAGQEDYDRLRP------LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--  131 (204)
Confidence                      001122334577999999988877666      5678899999999999999998876 444444321  


Q ss_pred             CCCCcEEEEEecCCCCCCCCH--------------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871          175 LASCPVLILGNKIDKHGAASE--------------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG  240 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  240 (249)
                      ..+.|+++|+||+|+.+....              ++..++.+..                ...++++|||++|.|++++
T Consensus       132 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------~~~~~~~vSA~~g~gi~~l  195 (204)
T 3th5_A          132 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI----------------GAVKYLECSALTQRGLKTV  195 (204)
Confidence            137999999999999753211              1111111111                1138999999999999999


Q ss_pred             HHHHhhhc
Q psy871          241 FRWLANYI  248 (249)
Q Consensus       241 ~~~l~~~i  248 (249)
                      +++|.+.+
T Consensus       196 ~~~l~~~i  203 (204)
T 3th5_A          196 FDEAIRAV  203 (204)
Confidence            99998754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.92  E-value=1.2e-24  Score=158.74  Aligned_cols=157  Identities=16%  Similarity=0.170  Sum_probs=100.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      |++.+|+++|++|||||||+++|++..+.. ..|+..                                           
T Consensus         1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t-------------------------------------------   37 (165)
T 2wji_A            1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVT-------------------------------------------   37 (165)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----C-------------------------------------------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcc-------------------------------------------
Confidence            457899999999999999999998765321 111100                                           


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhH---HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK---SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                      .....    ..+...+..+.+|||||++++....   .....++. ...+|++++|+|+++.....   .++.++..   
T Consensus        38 ~~~~~----~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~~~~~~~~---~~~~~~~~---  106 (165)
T 2wji_A           38 VEKKE----GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEKPDLVVNIVDATALERNL---YLTLQLME---  106 (165)
T ss_dssp             CCCCE----EEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH-HHCCSEEEEEEETTCHHHHH---HHHHHHHH---
T ss_pred             eeeeE----EEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh-cCCCCEEEEEecCCchhHhH---HHHHHHHh---
Confidence            00000    0111123568999999988764321   11111111 13689999999999865432   24444432   


Q ss_pred             CCCCcEEEEEecCCCCCC--CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHGA--ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       .+.|+++|+||+|+...  .. .+..++.+...                 .+++++||++|.|+++++++|.+.+
T Consensus       107 -~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~-----------------~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          107 -MGANLLLALNKMDLAKSLGIE-IDVDKLEKILG-----------------VKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             -TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHT-----------------SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             -cCCCEEEEEEchHhccccChh-hHHHHHHHHhC-----------------CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence             47999999999998531  11 12333344433                 6899999999999999999998875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=7.3e-25  Score=183.25  Aligned_cols=165  Identities=13%  Similarity=0.078  Sum_probs=107.5

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhH---H--HHhhhhccc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK---S--ELQCLLTDE  141 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~---~--~~~~~~~~~  141 (249)
                      .++.++|.+++|||++++++.+..+....+..+.++......+...+..+.+|||||+.+.....   +  .....+.++
T Consensus       176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~  255 (436)
T 2hjg_A          176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI  255 (436)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHH
Confidence            47899999999999999999987764333333444444434444445679999999974322211   1  011223467


Q ss_pred             cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCC--HHHHHHHhhhcccccCcccCCCCCC
Q psy871          142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAAS--EEEIRQYFGLYGLTTGKVATPRSEM  219 (249)
Q Consensus       142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  219 (249)
                      ..+|++++|+|+++..++++.. ++..+. .   .++|+++|+||+|+.+...  .+++.+.+....            .
T Consensus       256 ~~ad~~llv~D~~~~~s~~~~~-~~~~~~-~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l------------~  318 (436)
T 2hjg_A          256 DRSEVVAVVLDGEEGIIEQDKR-IAGYAH-E---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF------------Q  318 (436)
T ss_dssp             HHCSEEEEEEETTTCCCHHHHH-HHHHHH-H---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHC------------G
T ss_pred             HhCCEEEEEEcCCcCCcHHHHH-HHHHHH-H---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhc------------c
Confidence            7899999999999988877653 444433 2   5799999999999986432  334433332211            0


Q ss_pred             CCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          220 SGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       220 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .....+++++||++|.|++++++.+.+.+
T Consensus       319 ~~~~~~~~~~SA~tg~~v~~l~~~i~~~~  347 (436)
T 2hjg_A          319 FLDYAPILFMSALTKKRIHTLMPAIIKAS  347 (436)
T ss_dssp             GGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred             cCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence            01236899999999999999999887653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.92  E-value=2.8e-24  Score=160.76  Aligned_cols=163  Identities=15%  Similarity=0.145  Sum_probs=106.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ...++|+++|++|||||||+++|++.......++.+.......                                     
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~-------------------------------------   63 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF-------------------------------------   63 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEE-------------------------------------
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEE-------------------------------------
Confidence            3457999999999999999999998775544444432222110                                     


Q ss_pred             ccceeceeccccccceEEEEEeCCC----------chhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHH
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSD----------RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC  168 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g----------~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~  168 (249)
                                 ...+..+.+|||||          ++.+....   ..++.....+|++++|+|+++.......  .+..
T Consensus        64 -----------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~  127 (195)
T 3pqc_A           64 -----------YLVNSKYYFVDLPGYGYAKVSKKERMLWKRLV---EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVE  127 (195)
T ss_dssp             -----------EEETTTEEEEECCCBSSSCCCHHHHHHHHHHH---HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHH
T ss_pred             -----------EEECCcEEEEECCCCccccCChhhHHHHHHHH---HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHH
Confidence                       00112377999999          33333333   3344555667999999999875443322  2223


Q ss_pred             HHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          169 LLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       169 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+..   .+.|+++|+||+|+.+....+...+..+...            .....++++++||++|.|+++++++|.+.+
T Consensus       128 ~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  192 (195)
T 3pqc_A          128 WMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVF------------SKYGEYTIIPTSSVTGEGISELLDLISTLL  192 (195)
T ss_dssp             HHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH------------HSSCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHH------------hhcCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence            3333   4799999999999986544444433333322            011236899999999999999999999876


Q ss_pred             C
Q psy871          249 D  249 (249)
Q Consensus       249 ~  249 (249)
                      .
T Consensus       193 ~  193 (195)
T 3pqc_A          193 K  193 (195)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.92  E-value=1.2e-24  Score=159.89  Aligned_cols=161  Identities=17%  Similarity=0.191  Sum_probs=103.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+..+|+++|++|||||||+++|++.......+..+......                                      
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~--------------------------------------   43 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL--------------------------------------   43 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCE--------------------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceecee--------------------------------------
Confidence            345799999999999999999998765432111111111100                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHH--HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS--ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~--~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                             ...+...+..+.+|||||++++....+  .......++..+|++++|+|+++..++... .++..+... ...
T Consensus        44 -------~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-~~~~~~~~~-~~~  114 (172)
T 2gj8_A           44 -------REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIAR-LPA  114 (172)
T ss_dssp             -------EEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHH-HHCHHHHHH-SCT
T ss_pred             -------eEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHHh-ccc
Confidence                   011111233578999999865432221  122233567889999999999998777533 344444332 235


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+++|+||+|+..+..     +..+.                 ...+++++||++|.|+++++++|.+.+
T Consensus       115 ~~p~ilv~NK~Dl~~~~~-----~~~~~-----------------~~~~~~~~SA~~g~gv~~l~~~l~~~~  164 (172)
T 2gj8_A          115 KLPITVVRNKADITGETL-----GMSEV-----------------NGHALIRLSARTGEGVDVLRNHLKQSM  164 (172)
T ss_dssp             TCCEEEEEECHHHHCCCC-----EEEEE-----------------TTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             CCCEEEEEECccCCcchh-----hhhhc-----------------cCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence            799999999999854210     00010                 236899999999999999999998865

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.91  E-value=4.4e-24  Score=159.79  Aligned_cols=161  Identities=15%  Similarity=0.199  Sum_probs=101.5

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +.++|+|+|++|||||||+++|++..+. ...++.+......                                      
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~--------------------------------------   63 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN--------------------------------------   63 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEE--------------------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEE--------------------------------------
Confidence            5689999999999999999999876532 2222222111110                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCC----------chhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHH
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSD----------RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC  168 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g----------~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~  168 (249)
                           .  ...   +..+.+|||||          ++.+.....   .++.....+|++++|+|+++..++...  .+..
T Consensus        64 -----~--~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~  128 (195)
T 1svi_A           64 -----F--YII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE---TYITTREELKAVVQIVDLRHAPSNDDV--QMYE  128 (195)
T ss_dssp             -----E--EEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH---HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHH
T ss_pred             -----E--EEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH---HHHhhhhcCCEEEEEEECCCCCCHHHH--HHHH
Confidence                 0  000   12488999999          333333332   333444455999999999997766654  2333


Q ss_pred             HHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          169 LLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       169 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      .+..   .+.|+++|+||+|+.+........+.+.. +.             .....+++++||++|.|+++++++|.+.
T Consensus       129 ~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  192 (195)
T 1svi_A          129 FLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN-------------IDPEDELILFSSETKKGKDEAWGAIKKM  192 (195)
T ss_dssp             HHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT-------------CCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHc-------------ccCCCceEEEEccCCCCHHHHHHHHHHH
Confidence            3333   67999999999999875333332222222 22             0123789999999999999999999887


Q ss_pred             cC
Q psy871          248 ID  249 (249)
Q Consensus       248 i~  249 (249)
                      +.
T Consensus       193 l~  194 (195)
T 1svi_A          193 IN  194 (195)
T ss_dssp             HT
T ss_pred             hc
Confidence            63

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.91  E-value=1.2e-23  Score=168.13  Aligned_cols=168  Identities=19%  Similarity=0.174  Sum_probs=113.9

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      -+.++..|+++|++|||||||+|+|++..+....++.+.+...+                                    
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~------------------------------------   49 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRV------------------------------------   49 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCE------------------------------------
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEE------------------------------------
Confidence            45677899999999999999999999877653332222221111                                    


Q ss_pred             Ccccceeceecccccc-ceEEEEEeCCCchhhh---hhHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           97 TLHPTRRVWKDYFPAV-DAIVFLVDTSDRERFE---ESKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~-~~~~~v~D~~g~~~~~---~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                               ...+... +..+.+|||||+....   ...+ .......++..+|++++|+|+++..++.+...|+..+ .
T Consensus        50 ---------~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l-~  119 (308)
T 3iev_A           50 ---------LGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI-K  119 (308)
T ss_dssp             ---------EEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHT-G
T ss_pred             ---------EEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHH-H
Confidence                     1112222 5679999999986543   1111 2233346678899999999999987777654334444 2


Q ss_pred             ccCCCCCcEEEEEecCCCC-CCCC-HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          172 DESLASCPVLILGNKIDKH-GAAS-EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .   .+.|+++|+||+|+. +... .+....+.+...               ...+++++||++|.|+++++++|.+.+
T Consensus       120 ~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~---------------~~~~i~~vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          120 P---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP---------------ELTEIVPISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             G---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT---------------TCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             h---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc---------------CCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence            2   579999999999997 4322 233333333321               236799999999999999999998865

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.91  E-value=3.8e-24  Score=155.16  Aligned_cols=159  Identities=17%  Similarity=0.135  Sum_probs=100.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ++|+++|++|||||||+++|.+..+....++.+...                                            
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------------------------------------   37 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTR--------------------------------------------   37 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-------------------------------------------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCcee--------------------------------------------
Confidence            589999999999999999998765432111111000                                            


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHH-HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSE-LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                       ......+...+..+.+||+||++.+...... .......+..+|++++|+|+++..+...  .++.+++..   .+.|+
T Consensus        38 -~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~  111 (161)
T 2dyk_A           38 -DLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPV  111 (161)
T ss_dssp             -CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCE
T ss_pred             -cceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCE
Confidence             0000111122346889999998764321111 1222356788999999999998643322  244444443   57999


Q ss_pred             EEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          181 LILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       181 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      ++|+||+|+.+.  .++..++. ..+                ..+++++||++|.|+++++++|.+.+.
T Consensus       112 ilv~nK~Dl~~~--~~~~~~~~-~~~----------------~~~~~~~Sa~~~~gv~~l~~~l~~~l~  161 (161)
T 2dyk_A          112 ILVATKVDDPKH--ELYLGPLY-GLG----------------FGDPIPTSSEHARGLEELLEAIWERLP  161 (161)
T ss_dssp             EEEEECCCSGGG--GGGCGGGG-GGS----------------SCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             EEEEECcccccc--hHhHHHHH-hCC----------------CCCeEEEecccCCChHHHHHHHHHhCc
Confidence            999999999754  11222211 111                127999999999999999999998763

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.91  E-value=1.2e-23  Score=170.22  Aligned_cols=160  Identities=15%  Similarity=0.192  Sum_probs=115.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+..+|+++|.+|+|||||++++++..+. ...+|.+.....                                      
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~--------------------------------------  194 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--------------------------------------  194 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEE--------------------------------------
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEE--------------------------------------
Confidence            45689999999999999999999977654 222332211100                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhH-HHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESK-SELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~  176 (249)
                              ...+.+....+.+||+||++.+.....      .++..+|++++|+|++++.++..+. .|+..+...  ..
T Consensus       195 --------~~~~~~~~~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~  258 (332)
T 2wkq_A          195 --------NVMVDGKPVNLGLWDTAGLEDYDRLRP------LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH--CP  258 (332)
T ss_dssp             --------EEEETTEEEEEEEEEECCCGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CT
T ss_pred             --------EEEECCEEEEEEEEeCCCchhhhHHHH------HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh--CC
Confidence                    001122344677999999998877666      6778899999999999999998876 344444332  23


Q ss_pred             CCcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHH
Q psy871          177 SCPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFR  242 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  242 (249)
                      ++|+++|+||+|+...              ...++..++.+...                ..++++|||++|.|++++++
T Consensus       259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~  322 (332)
T 2wkq_A          259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG----------------AVKYLECSALTQRGLKTVFD  322 (332)
T ss_dssp             TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTCTTHHHHHH
T ss_pred             CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC----------------CcEEEEecCCCCcCHHHHHH
Confidence            8999999999998642              33444555554433                13899999999999999999


Q ss_pred             HHhhhc
Q psy871          243 WLANYI  248 (249)
Q Consensus       243 ~l~~~i  248 (249)
                      +|.+.+
T Consensus       323 ~l~~~~  328 (332)
T 2wkq_A          323 EAIRAV  328 (332)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.91  E-value=3.8e-24  Score=158.84  Aligned_cols=168  Identities=15%  Similarity=0.108  Sum_probs=105.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCC--CC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDR--LA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ++||+++|++|||||||+++|++..  +. .+.||++.......+       .+                          
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~-------~~--------------------------   48 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPI-------QI--------------------------   48 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC-----------------------------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeee-------cc--------------------------
Confidence            5799999999999999999998752  22 234444432222100       00                          


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh-hhhHhhHHHHHHHHhccCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR-ERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~  176 (249)
                               .........+.+||++|++++.....      .++..++++++|+|++++ .++..+..|+.++...  ..
T Consensus        49 ---------~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~  111 (184)
T 2zej_A           49 ---------RDKRKRDLVLNVWDFAGREEFYSTHP------HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--AS  111 (184)
T ss_dssp             ----------------CEEEEEEECSHHHHHTTSH------HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH--CT
T ss_pred             ---------ccCCCCceEEEEEecCCCHHHHHhhH------HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh--CC
Confidence                     00011245688999999988877655      456678999999999997 5788888788777543  24


Q ss_pred             CCcEEEEEecCCCCCCCCHHH-HHHHhhhcccccCcccCCCCCCCC-CceeEEEeeecccc-chHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEE-IRQYFGLYGLTTGKVATPRSEMSG-RPIELFMCSVLMRQ-GYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~-gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.+.....+ .....+.+..          .... ...+++++||++|. |++++++.+.+.+
T Consensus       112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~  176 (184)
T 2zej_A          112 SSPVILVGTHLDVSDEKQRKACMSKITKELLN----------KRGFPAIRDYHFVNATEESDALAKLRKTIINES  176 (184)
T ss_dssp             TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTT----------CTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCcccchhhHHHHHHHHHHHHH----------hcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence            799999999999975311111 1111122110          0110 11249999999996 9999999987654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.90  E-value=9.7e-23  Score=153.12  Aligned_cols=161  Identities=17%  Similarity=0.208  Sum_probs=116.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ...++|+++|++|||||||+++|++..+. ...||.+......       .                             
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~-------~-----------------------------   46 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR-------S-----------------------------   46 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEE-------E-----------------------------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE-------E-----------------------------
Confidence            34689999999999999999999987654 2334433221111       0                             


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               ..+.+.+..+.+||++|++.+.....      .++..++++++|+|+++..++..+..++..+... ...+
T Consensus        47 ---------i~~~g~~~~~~i~Dt~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~  110 (199)
T 2f9l_A           47 ---------IQVDGKTIKAQIWDTAGQERYRRITS------AYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSN  110 (199)
T ss_dssp             ---------EEETTEEEEEEEEECSSGGGTTCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred             ---------EEECCEEEEEEEEECCCchhhhhhhH------HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence                     11122334578999999888766555      4456789999999999999988877666655332 2357


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++++||+|+.+  ....++...++....                 +.++++||+++.|+++++++|.+.+
T Consensus       111 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-----------------~~~~d~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          111 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNN-----------------LSFIETSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CeEEEEEECcccccccCcCHHHHHHHHHHcC-----------------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999965  345566666666544                 7899999999999999999998754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.90  E-value=4.6e-23  Score=163.91  Aligned_cols=165  Identities=21%  Similarity=0.186  Sum_probs=108.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+..+|+++|++|||||||+|+|++..+....+....+...                                       
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~---------------------------------------   45 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR---------------------------------------   45 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC---------------------------------------
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEE---------------------------------------
Confidence            46678999999999999999999987665322111111111                                       


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHH--HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS--ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~--~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                            ....+...+..+.+|||||.........  .......++..+|++++|+|+++..+..+  .++.+.+... ..
T Consensus        46 ------i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-~~  116 (301)
T 1wf3_A           46 ------LRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPL-VG  116 (301)
T ss_dssp             ------EEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-TT
T ss_pred             ------EEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-cC
Confidence                  1111223356799999999775332211  11233466789999999999998644432  3544444432 14


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+.....  ++.+.++.+.               ...+++++||++|.|+++++++|.+.+
T Consensus       117 ~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~---------------~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          117 KVPILLVGNKLDAAKYPE--EAMKAYHELL---------------PEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             TSCEEEEEECGGGCSSHH--HHHHHHHHTS---------------TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEECcccCCchH--HHHHHHHHhc---------------CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            799999999999975411  1333333321               225799999999999999999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.90  E-value=4.8e-24  Score=167.70  Aligned_cols=160  Identities=21%  Similarity=0.156  Sum_probs=103.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      |+.++|+++|.+|+|||||+|+|++..... ..                      ++                     + 
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v-~~----------------------~~---------------------g-   35 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRV-GN----------------------WA---------------------G-   35 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHTTCEEE-EE----------------------CT---------------------T-
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCccc-CC----------------------CC---------------------C-
Confidence            467899999999999999999998764320 00                      00                     0 


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhh------HHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEES------KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD  172 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~  172 (249)
                       .+.......+...+..+.+|||||+..+...      .+...........+|++++|+|+++......+..++.+    
T Consensus        36 -~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~----  110 (274)
T 3i8s_A           36 -VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLE----  110 (274)
T ss_dssp             -SSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH----
T ss_pred             -eeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHh----
Confidence             0111111112223456889999998876632      11111122223689999999999997655543333322    


Q ss_pred             cCCCCCcEEEEEecCCCCCCCC-HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          173 ESLASCPVLILGNKIDKHGAAS-EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       173 ~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                         .++|+++|+||+|+.+... ..+...+.+..+                 ++++++||++|.|++++++++.+.+
T Consensus       111 ---~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-----------------~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          111 ---LGIPCIVALNMLDIAEKQNIRIEIDALSARLG-----------------CPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             ---HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-----------------SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             ---cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-----------------CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence               3799999999999864211 112233334444                 7899999999999999999998764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.90  E-value=6.6e-23  Score=156.66  Aligned_cols=171  Identities=18%  Similarity=0.211  Sum_probs=104.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCC-CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+|+|++|||||||+|+|++.. .....++.+......                                     
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~-------------------------------------   69 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN-------------------------------------   69 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE-------------------------------------
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE-------------------------------------
Confidence            346799999999999999999999876 222222222111110                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhh-------hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHH
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERF-------EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL  170 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~  170 (249)
                            .. ......+..+.+|||||....       .........++.....+|++++|+|+++..+...  ..+...+
T Consensus        70 ------~~-~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l  140 (223)
T 4dhe_A           70 ------YF-SVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWF  140 (223)
T ss_dssp             ------EE-EESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHH
T ss_pred             ------EE-EecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHH
Confidence                  00 000122346889999995321       1112233345555666899999999998533222  2333333


Q ss_pred             hccCCCCCcEEEEEecCCCCCCCCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          171 TDESLASCPVLILGNKIDKHGAASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       171 ~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ..   .+.|+++|+||+|+.......    ++.+.+.....          .......+++++||++|.|+++++++|.+
T Consensus       141 ~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  207 (223)
T 4dhe_A          141 AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD----------AGYAGKLTVQLFSALKRTGLDDAHALIES  207 (223)
T ss_dssp             GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH----------HTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh----------cccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence            33   679999999999997632221    22222222100          00013478999999999999999999988


Q ss_pred             hc
Q psy871          247 YI  248 (249)
Q Consensus       247 ~i  248 (249)
                      .+
T Consensus       208 ~~  209 (223)
T 4dhe_A          208 WL  209 (223)
T ss_dssp             HH
T ss_pred             hc
Confidence            65

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.90  E-value=4.9e-24  Score=166.10  Aligned_cols=90  Identities=13%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             ccceEEEEEECCCh--hhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871          143 LASSIVFLVDTSDR--ERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS  220 (249)
Q Consensus       143 ~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (249)
                      .+|++++|+|++++  .++..+..|+..+.......++|+++|+||+|+......++..++.+..               
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~---------------  226 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSK---------------  226 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTS---------------
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhc---------------
Confidence            69999999999998  8999888888777654233579999999999996532223333333321               


Q ss_pred             CCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          221 GRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       221 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ..+++++|||++|.|+++++++|.+.+
T Consensus       227 -~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          227 -KNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             -SSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             -CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence             126899999999999999999998865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.89  E-value=1.4e-22  Score=155.46  Aligned_cols=167  Identities=16%  Similarity=0.196  Sum_probs=102.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+.++|+|+|++|||||||+++|++..+.. .+.                        .                   + 
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~-~~~------------------------~-------------------~-   61 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDV-QSY------------------------S-------------------F-   61 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEE-ECC----------------------------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-CCC------------------------C-------------------C-
Confidence            457899999999999999999998764431 000                        0                   0 


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHH---HHhhhhccccccceEEEEEECCChhhhHh--hHHHHHHHHhcc
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS---ELQCLLTDESLASSIVFLVDTSDRERFEE--SKSELQCLLTDE  173 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~~~~~~~~  173 (249)
                       .+.......+......+.+|||||+........   ........+..+|++++|+|++++.++..  ...++..+... 
T Consensus        62 -~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-  139 (228)
T 2qu8_A           62 -TTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-  139 (228)
T ss_dssp             ----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-
T ss_pred             -cceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-
Confidence             000000011112245789999999843211000   01111123567899999999999877752  22344444221 


Q ss_pred             CCCCCcEEEEEecCCCCCC--CCHH---HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHGA--ASEE---EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ..+.|+++|+||+|+.+.  ...+   ...++.+...               ...++++|||++|.|+++++++|.+.+
T Consensus       140 -~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~SA~~g~gi~~l~~~l~~~i  203 (228)
T 2qu8_A          140 -FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVK---------------NPIKFSSFSTLTGVGVEQAKITACELL  203 (228)
T ss_dssp             -C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCC---------------SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             -hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcC---------------CCceEEEEecccCCCHHHHHHHHHHHH
Confidence             247999999999999763  2222   2222222211               227899999999999999999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=1.9e-23  Score=155.48  Aligned_cols=161  Identities=16%  Similarity=0.163  Sum_probs=103.5

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      +-++++++|+++|++|||||||+++|++..+. ...|+...                                       
T Consensus         2 ~~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~---------------------------------------   42 (188)
T 2wjg_A            2 GSHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTV---------------------------------------   42 (188)
T ss_dssp             CCCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCC---------------------------------------
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeec---------------------------------------
Confidence            44678899999999999999999999875432 11111100                                       


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchhhhhhH---HHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK---SELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                              ......+...+..+.+|||||++.+....   .....++. ...+|++++|+|.++..   ....++..+..
T Consensus        43 --------~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~d~~~~~---~~~~~~~~~~~  110 (188)
T 2wjg_A           43 --------EKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEKPDLVVNIVDATALE---RNLYLTLQLME  110 (188)
T ss_dssp             --------EEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH-HHCCSEEEEEEEGGGHH---HHHHHHHHHHT
T ss_pred             --------cceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh-ccCCCEEEEEecchhHH---HHHHHHHHHHh
Confidence                    00001111224568999999988764221   11111111 13589999999998743   33335555433


Q ss_pred             ccCCCCCcEEEEEecCCCCCCC-CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          172 DESLASCPVLILGNKIDKHGAA-SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                          .+.|+++|+||+|+.... ...+..++.+...                 .+++++||++|.|++++++++.+.+
T Consensus       111 ----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~~l~~~i~~~~  167 (188)
T 2wjg_A          111 ----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-----------------VKVVPLSAAKKMGIEELKKAISIAV  167 (188)
T ss_dssp             ----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-----------------SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             ----cCCCEEEEEEhhhccccccchHHHHHHHHHhC-----------------CCeEEEEecCCCCHHHHHHHHHHHH
Confidence                579999999999985421 1123344444444                 6899999999999999999998765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.89  E-value=2.2e-23  Score=162.39  Aligned_cols=158  Identities=18%  Similarity=0.151  Sum_probs=104.2

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +++.++|+++|.+|+|||||+|+|++..+.. ..|                                             
T Consensus         2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~p---------------------------------------------   36 (258)
T 3a1s_A            2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWP---------------------------------------------   36 (258)
T ss_dssp             -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECT---------------------------------------------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCC---------------------------------------------
Confidence            3577899999999999999999998755321 001                                             


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHH---HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS---ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                      +.  +.......+...+..+.+||+||...+.....   ....++. ...+|++++|+|+++..+...   ++.++..  
T Consensus        37 g~--tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~~d~ii~V~D~t~~~~~~~---~~~~l~~--  108 (258)
T 3a1s_A           37 GV--TVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-KGDADLVILVADSVNPEQSLY---LLLEILE--  108 (258)
T ss_dssp             TS--CCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-HSCCSEEEEEEETTSCHHHHH---HHHHHHT--
T ss_pred             Cc--eEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-hcCCCEEEEEeCCCchhhHHH---HHHHHHh--
Confidence            00  01111111222346799999999887754321   1111221 157999999999999765433   3444432  


Q ss_pred             CCCCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          174 SLASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                        .+.|+++|+||+|+... ....+...+.+.++                 ++++++||++|.|++++++++.+.
T Consensus       109 --~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-----------------~~vi~~SA~~g~gi~el~~~i~~~  164 (258)
T 3a1s_A          109 --MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-----------------IPVVFTSSVTGEGLEELKEKIVEY  164 (258)
T ss_dssp             --TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC-----------------SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             --cCCCEEEEEECcCCCCccchHHHHHHHHHHcC-----------------CCEEEEEeeCCcCHHHHHHHHHHH
Confidence              57999999999998541 11112344444444                 789999999999999999998774

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.89  E-value=5.1e-23  Score=153.25  Aligned_cols=159  Identities=18%  Similarity=0.169  Sum_probs=93.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      ++|+++|++|||||||+++|++..+.. ..|+.......+                                        
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~----------------------------------------   41 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI----------------------------------------   41 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE----------------------------------------
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE----------------------------------------
Confidence            589999999999999999998876442 111111100000                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCc-----------hhhhhhHHHHhhhhcc-ccccceEEEEEECCChhhhHhh-HHHHH
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDR-----------ERFEESKSELQCLLTD-ESLASSIVFLVDTSDRERFEES-KSELQ  167 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~-----------~~~~~~~~~~~~~~~~-~~~~d~ii~v~d~~~~~~~~~~-~~~~~  167 (249)
                             .+.    .+.+|||||.           +.+.....   .++.. ...+++++.|.|..   ++..+ ..|..
T Consensus        42 -------~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~v~d~~---s~~~~~~~~~~  104 (190)
T 2cxx_A           42 -------EWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIV---HFIEDNAKNIDVAVLVVDGK---AAPEIIKRWEK  104 (190)
T ss_dssp             -------EET----TEEEEECCCBSCCTTSCHHHHHHHHHHHH---HHHHHHGGGCCEEEEEEETT---HHHHHHHHHHH
T ss_pred             -------ecC----CEEEEECCCccccccCCHHHHHHHHHHHH---HHHHhhhccCCEEEEEEcch---hhhhHHHhhhc
Confidence                   000    4789999994           33333222   22222 34455555555554   44333 11221


Q ss_pred             --------HHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          168 --------CLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       168 --------~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                              ++.......+.|+++|+||+|+.... .++..++.+..+..          ......++++|||++|.|+++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~~~~v~~  173 (190)
T 2cxx_A          105 RGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVP----------LSEIDKVFIPISAKFGDNIER  173 (190)
T ss_dssp             TTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCC----------GGGHHHHEEECCTTTCTTHHH
T ss_pred             cCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhh----------hhccCCcEEEEecCCCCCHHH
Confidence                    11111112679999999999998753 44555555554410          000124689999999999999


Q ss_pred             HHHHHhhhc
Q psy871          240 GFRWLANYI  248 (249)
Q Consensus       240 l~~~l~~~i  248 (249)
                      ++++|.+.+
T Consensus       174 l~~~l~~~~  182 (190)
T 2cxx_A          174 LKNRIFEVI  182 (190)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999998764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.89  E-value=2.3e-23  Score=162.06  Aligned_cols=154  Identities=16%  Similarity=0.118  Sum_probs=99.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ++|+++|.+|+|||||+|+|++.....                       ..++                     +  .+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v-----------------------~~~p---------------------g--~T   35 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRV-----------------------GNWP---------------------G--VT   35 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEE-----------------------EECT---------------------T--SS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCc-----------------------cCCC---------------------C--ce
Confidence            589999999999999999998764220                       0001                     0  11


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhh------HHHHhhhhccc--cccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEES------KSELQCLLTDE--SLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~------~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                      .......+...+..+.+|||||...+...      .+....  .++  ..+|++++|+|+++......+.   ..+ .. 
T Consensus        36 v~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~--~~~~~~~~d~vi~VvDas~~~~~~~l~---~~l-~~-  108 (256)
T 3iby_A           36 VEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAA--QSVIDLEYDCIINVIDACHLERHLYLT---SQL-FE-  108 (256)
T ss_dssp             SEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHH--HHHHHSCCSEEEEEEEGGGHHHHHHHH---HHH-TT-
T ss_pred             EEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHH--HHHhhCCCCEEEEEeeCCCchhHHHHH---HHH-HH-
Confidence            11111122223457899999998877532      221111  222  6799999999999976555432   222 22 


Q ss_pred             CCCCCcEEEEEecCCCCCCC-CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          174 SLASCPVLILGNKIDKHGAA-SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                        .++|+++|+||+|+.... ...+...+.+.++                 ++++++||++|.|++++++++.+.
T Consensus       109 --~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-----------------~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          109 --LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-----------------CSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             --SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-----------------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             --cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-----------------CCEEEEECCCCCCHHHHHHHHHhh
Confidence              579999999999986421 1112333334444                 789999999999999999999763

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.89  E-value=4.5e-23  Score=166.11  Aligned_cols=163  Identities=21%  Similarity=0.251  Sum_probs=113.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++|+|+|.+|||||||+++|++..+.   ++.+|..+..+.+.                                     
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~-------------------------------------  201 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVE-------------------------------------  201 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEE-------------------------------------
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEE-------------------------------------
Confidence            47999999999999999999876532   22334333332221                                     


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhcc-
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDE-  173 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~-  173 (249)
                                +. ....+.+||+||.....+ .......++.++.+++++++|+|+++   .+++..+..++.++.... 
T Consensus       202 ----------~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~  270 (342)
T 1lnz_A          202 ----------TD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL  270 (342)
T ss_dssp             ----------CS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS
T ss_pred             ----------eC-CCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh
Confidence                      01 114689999999764222 22233556777888999999999998   677877776666664422 


Q ss_pred             CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      ...++|+++|+||+|+...  .+.+.++.+.+.               ...+++++||+++.|+++++.+|.+.++
T Consensus       271 ~l~~~p~ilV~NK~Dl~~~--~e~~~~l~~~l~---------------~~~~v~~iSA~tg~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          271 RLTERPQIIVANKMDMPEA--AENLEAFKEKLT---------------DDYPVFPISAVTREGLRELLFEVANQLE  329 (342)
T ss_dssp             STTTSCBCBEEECTTSTTH--HHHHHHHHHHCC---------------SCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             hhcCCCEEEEEECccCCCC--HHHHHHHHHHhh---------------cCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence            1358999999999999753  233444444332               1157999999999999999999988763

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.88  E-value=1.3e-22  Score=170.15  Aligned_cols=164  Identities=21%  Similarity=0.189  Sum_probs=94.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+.++|+++|++|||||||+|+|++.+.....+..+                                            
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~g--------------------------------------------  266 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPG--------------------------------------------  266 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC--------------------------------------------------------
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC--------------------------------------------
Confidence            456789999999999999999998764321111111                                            


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHH--hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSEL--QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~--~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                       .++......+...+..+.+|||||+..+....+..  .....++..+|++++|+|++++.++..+.. ...++...  .
T Consensus       267 -tT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l--~  342 (476)
T 3gee_A          267 -TTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTE-IRELKAAH--P  342 (476)
T ss_dssp             -------CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC--T
T ss_pred             -ceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHH-HHHHHHhc--C
Confidence             11111111122234569999999987765544321  344567889999999999999888754332 22233222  3


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+++|+||+|+......+ ...+.+. .                ..+++++||++|.|+++++++|.+.+
T Consensus       343 ~~piIvV~NK~Dl~~~~~~~-~~~l~~~-~----------------~~~~i~vSAktg~GI~eL~~~i~~~~  396 (476)
T 3gee_A          343 AAKFLTVANKLDRAANADAL-IRAIADG-T----------------GTEVIGISALNGDGIDTLKQHMGDLV  396 (476)
T ss_dssp             TSEEEEEEECTTSCTTTHHH-HHHHHHH-H----------------TSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred             CCCEEEEEECcCCCCccchh-HHHHHhc-C----------------CCceEEEEECCCCCHHHHHHHHHHHH
Confidence            79999999999998753332 2222221 1                15799999999999999999998765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.88  E-value=2.8e-22  Score=171.81  Aligned_cols=166  Identities=17%  Similarity=0.125  Sum_probs=107.7

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      ..+++||+++|.+|||||||+++|++..+. ...||++........            +                     
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~------------~---------------------   84 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQA------------P---------------------   84 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEG------------G---------------------
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEecc------------c---------------------
Confidence            567899999999999999999999987764 334454433322200            0                     


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                         .. ..+..........+.+||+||++.+.....      .++..+|++++|+|+++.....   .|+..+...  ..
T Consensus        85 ---~~-~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~------~~l~~~d~ii~V~D~s~~~~~~---~~~~~l~~~--~~  149 (535)
T 3dpu_A           85 ---NI-KGLENDDELKECLFHFWDFGGQEIMHASHQ------FFMTRSSVYMLLLDSRTDSNKH---YWLRHIEKY--GG  149 (535)
T ss_dssp             ---GS-GGGTTCSTTTTCEEEEECCCSCCTTTTTCH------HHHHSSEEEEEEECGGGGGGHH---HHHHHHHHH--SS
T ss_pred             ---cc-cceeecCCCceEEEEEEECCcHHHHHHHHH------HHccCCcEEEEEEeCCCchhHH---HHHHHHHHh--CC
Confidence               00 001011123356799999999988877666      4566799999999998764443   355554332  14


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.|+++|+||+|+..  ....+++.+.+....                 .+++++||++|.|++++++.+.+.+
T Consensus       150 ~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~~vSA~~g~gi~eL~~~l~~~~  206 (535)
T 3dpu_A          150 KSPVIVVMNKIDENPSYNIEQKKINERFPAIE-----------------NRFHRISCKNGDGVESIAKSLKSAV  206 (535)
T ss_dssp             SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGT-----------------TCEEECCC-----CTTHHHHHHHHH
T ss_pred             CCCEEEEEECCCcccccccCHHHHHHHHHhcC-----------------CceEEEecCcccCHHHHHHHHHHHH
Confidence            699999999999975  345666777666655                 6799999999999999999998765

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.88  E-value=7.2e-23  Score=160.40  Aligned_cols=156  Identities=18%  Similarity=0.166  Sum_probs=100.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..++|+++|++|+|||||+|+|++.... ...|  +.+....                                      
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~--------------------------------------   41 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERK--------------------------------------   41 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCE--------------------------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEE--------------------------------------
Confidence            3579999999999999999999876522 1111  1111000                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhH--H-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK--S-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~--~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                             ...+.. +..+.+|||||++++....  + ....++.. ..+|++++|+|+++......   +..++..    
T Consensus        42 -------~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~d~vi~V~D~t~~e~~~~---~~~~l~~----  105 (272)
T 3b1v_A           42 -------SGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS-QRADSILNVVDATNLERNLY---LTTQLIE----  105 (272)
T ss_dssp             -------EEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT-TCCSEEEEEEEGGGHHHHHH---HHHHHHH----
T ss_pred             -------EEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc-CCCCEEEEEecCCchHhHHH---HHHHHHh----
Confidence                   011122 3458899999988775321  1 11122221 46999999999998765433   3334432    


Q ss_pred             CCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .++|+++++||+|+... ....+...+.+.++                 ++++++||++|.|++++++++.+.+
T Consensus       106 ~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-----------------~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          106 TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG-----------------VPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT-----------------SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC-----------------CCEEEEEccCCCCHHHHHHHHHHHH
Confidence            57999999999998531 11122333444444                 7899999999999999999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.88  E-value=8.1e-22  Score=147.13  Aligned_cols=160  Identities=18%  Similarity=0.205  Sum_probs=116.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..++|+|+|++|||||||+++|++..+. ...||.+......       .                              
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~-------~------------------------------   70 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR-------S------------------------------   70 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE-------E------------------------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEE-------E------------------------------
Confidence            3579999999999999999999987754 3444444221111       0                              


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                              ..+.+.+..+.+||++|.+++.....      .++..++++++|+|.++..++..+..++..+... ...+.
T Consensus        71 --------i~~~g~~~~~~i~Dt~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~  135 (191)
T 1oix_A           71 --------IQVDGKTIKAQIWDTAGLERYRAITS------AYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNI  135 (191)
T ss_dssp             --------EEETTEEEEEEEEEECSCCSSSCCCH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTC
T ss_pred             --------EEECCEEEEEEEEECCCCcchhhhhH------HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCC
Confidence                    01122234567899999887766555      4456788999999999998888776666655332 23578


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++++||+|+.+  ....+....+.....                 +.++++||+++.|+++++++|.+.+
T Consensus       136 ~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-----------------~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNG-----------------LSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999965  345566666666544                 7899999999999999999998765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.88  E-value=3.2e-22  Score=159.85  Aligned_cols=157  Identities=15%  Similarity=0.164  Sum_probs=108.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC----CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      ...||+++|++|||||||+++|++....    .+.+|++.....+                                   
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~-----------------------------------   46 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHL-----------------------------------   46 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEE-----------------------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEE-----------------------------------
Confidence            3579999999999999999999876322    2334443322222                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhh-----hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHH---H
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF-----EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSEL---Q  167 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~---~  167 (249)
                                  .+. ....+.+||+||++++     .....      .++..+|++++|+|++++.++..+..+.   .
T Consensus        47 ------------~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~------~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~  107 (307)
T 3r7w_A           47 ------------RFL-GNMTLNLWDCGGQDVFMENYFTKQKD------HIFQMVQVLIHVFDVESTEVLKDIEIFAKALK  107 (307)
T ss_dssp             ------------EET-TTEEEEEEEECCSHHHHHHHHTTTHH------HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHH
T ss_pred             ------------EeC-CceEEEEEECCCcHHHhhhhhhhHHH------HHhccCCEEEEEEECCChhhHHHHHHHHHHHH
Confidence                        011 2467899999999887     33333      5567899999999999999998875443   3


Q ss_pred             HHHhccCCCCCcEEEEEecCCCCCCCCH--------HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          168 CLLTDESLASCPVLILGNKIDKHGAASE--------EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       168 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      ++...  ..++|+++|+||+|+.+...+        +++.++.+..+              ...++++++||++ .|+.+
T Consensus       108 ~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g--------------~~~~~~~~tSa~~-~~i~e  170 (307)
T 3r7w_A          108 QLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG--------------FPNLIGFPTSIWD-ESLYK  170 (307)
T ss_dssp             HHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT--------------CCSCEEEECCTTS-SHHHH
T ss_pred             HHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC--------------CCCeEEEEeeecC-ChHHH
Confidence            33221  357999999999999762122        33444444332              1137899999999 89999


Q ss_pred             HHHHHhhh
Q psy871          240 GFRWLANY  247 (249)
Q Consensus       240 l~~~l~~~  247 (249)
                      .+..+.+.
T Consensus       171 ~~~~iv~~  178 (307)
T 3r7w_A          171 AWSQIVCS  178 (307)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            88887764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.88  E-value=1.9e-22  Score=169.25  Aligned_cols=159  Identities=20%  Similarity=0.209  Sum_probs=106.5

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +.++|+++|+||||||||+|+|++.+.....+..+.+....                                       
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~---------------------------------------  282 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVI---------------------------------------  282 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSC---------------------------------------
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeE---------------------------------------
Confidence            34799999999999999999999875432111111111111                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCch-hhhhhHHH--HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRE-RFEESKSE--LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~-~~~~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                            ...+...+..+.+|||||.. .+....+.  ......++..+|++++|+|++++.++.+.. .+ +.+     .
T Consensus       283 ------~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~  349 (482)
T 1xzp_A          283 ------SEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-IL-ERI-----K  349 (482)
T ss_dssp             ------CEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HH-HHH-----T
T ss_pred             ------EEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HH-HHh-----c
Confidence                  01111123468999999987 55432221  122346678899999999999987765532 22 222     4


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+++|+||+|+......+++.++.. .                 ..+++++||++|.|+++++++|.+.+
T Consensus       350 ~~piivV~NK~DL~~~~~~~~~~~~~~-~-----------------~~~~i~iSAktg~Gi~eL~~~l~~~~  403 (482)
T 1xzp_A          350 NKRYLVVINKVDVVEKINEEEIKNKLG-T-----------------DRHMVKISALKGEGLEKLEESIYRET  403 (482)
T ss_dssp             TSSEEEEEEECSSCCCCCHHHHHHHHT-C-----------------STTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred             CCCEEEEEECcccccccCHHHHHHHhc-C-----------------CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999977555555544322 1                 15799999999999999999998753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.88  E-value=2.3e-22  Score=159.37  Aligned_cols=158  Identities=13%  Similarity=0.212  Sum_probs=101.7

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCC----CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQ----PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ||+++|..|||||||++++.+.....    ..||++.....+                                      
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--------------------------------------   42 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--------------------------------------   42 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--------------------------------------
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--------------------------------------
Confidence            68999999999999999987654332    223333211110                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhh---hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc--c
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEE---SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD--E  173 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~---~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~--~  173 (249)
                                  +....+.+|||+|+++|..   ...      .+++.++++++|+|+++.  +.....++.+++..  .
T Consensus        43 ------------~~~v~LqIWDTAGQErf~~~~l~~~------~yyr~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~  102 (331)
T 3r7w_B           43 ------------STLIDLAVMELPGQLNYFEPSYDSE------RLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYK  102 (331)
T ss_dssp             ------------CSSSCEEEEECCSCSSSCCCSHHHH------HHHTTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHH
T ss_pred             ------------ccEEEEEEEECCCchhccchhhhhh------hhccCCCEEEEEEECCch--HHHHHHHHHHHHHHHhh
Confidence                        1124699999999999853   234      567899999999999997  33333344333221  1


Q ss_pred             CCCCCcEEEEEecCCCCCCCCHH----HHHHHh-hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHGAASEE----EIRQYF-GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...++|+++++||+|+..+..+.    ++.... +.+..         .......++++++||++ .++.+.|..+.+.+
T Consensus       103 ~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~---------~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l  172 (331)
T 3r7w_B          103 VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLE---------LGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL  172 (331)
T ss_dssp             HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSS---------SSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred             cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHh---------hcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence            23689999999999998642221    222211 11110         00011358999999998 69999999988764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=1.1e-21  Score=162.41  Aligned_cols=116  Identities=11%  Similarity=0.143  Sum_probs=81.9

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA  193 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  193 (249)
                      ..+.+|||||++.|.....      .++..+|++++|+|+++..++....+++..+...   ...|+++++||+|+.+..
T Consensus        75 ~~~~iiDtPGh~~~~~~~~------~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~  145 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATML------SGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKE  145 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHH------HHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHH
T ss_pred             ceEEEEECCCcHHHHHHHH------HHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchH
Confidence            5789999999998877666      6778899999999999976555555455443221   336999999999998642


Q ss_pred             CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          194 SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...+..+.+....          .......++++++||++|.|+++++++|.+.+
T Consensus       146 ~~~~~~~~i~~~l----------~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          146 EALSQYRQIKQFT----------KGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HHHHHHHHHHHHH----------TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHH----------HhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            2222222222111          01122347899999999999999999998754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.87  E-value=1.7e-22  Score=158.86  Aligned_cols=160  Identities=17%  Similarity=0.096  Sum_probs=101.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      |+.++|+++|++|||||||+|+|++..+.. ..|+.                                            
T Consensus         1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~--------------------------------------------   36 (271)
T 3k53_A            1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGV--------------------------------------------   36 (271)
T ss_dssp             CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTS--------------------------------------------
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCe--------------------------------------------
Confidence            467899999999999999999998754320 01110                                            


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhcc--ccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTD--ESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                         +.......+...+..+.+||+||+..+........-.-.+  ...+|++++|+|+++......   ++.++...   
T Consensus        37 ---t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~---~~~~~~~~---  107 (271)
T 3k53_A           37 ---TVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLF---LTLELFEM---  107 (271)
T ss_dssp             ---SCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHH---HHHHHHHT---
T ss_pred             ---EEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHH---HHHHHHhc---
Confidence               1111111122234468999999988765522111001122  267999999999999643322   33333331   


Q ss_pred             CCCcEEEEEecCCCCCC-CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGA-ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...|+++|+||+|+.+. ....+...+.+.++                 ++++++||++|.|++++++.+.+.+
T Consensus       108 ~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-----------------~~~~~~Sa~~g~gi~~l~~~i~~~~  164 (271)
T 3k53_A          108 EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-----------------VPVIPTNAKKGEGVEELKRMIALMA  164 (271)
T ss_dssp             TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-----------------SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEChhcCcccccHHHHHHHHHHcC-----------------CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            23999999999997531 00011333444444                 7899999999999999999998653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.87  E-value=1.9e-21  Score=154.74  Aligned_cols=165  Identities=14%  Similarity=0.161  Sum_probs=105.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+..+|+++|++|||||||+|+|++..+....+..+                                            
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~--------------------------------------------   41 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ--------------------------------------------   41 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSS--------------------------------------------
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCC--------------------------------------------
Confidence            456789999999999999999998765431111110                                            


Q ss_pred             ccceeceeccccccceEEEEEeCCCch-hhh-hhHHHH-hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRE-RFE-ESKSEL-QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~-~~~-~~~~~~-~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                       .++......+...+..+.++||||+. ... .....+ ......+..+|++++|+|+++   +.....++.+.+..   
T Consensus        42 -tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---  114 (301)
T 1ega_A           42 -TTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---  114 (301)
T ss_dssp             -CCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---
T ss_pred             -cceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---
Confidence             00111111122335678999999986 322 222111 223466788999999999977   32323344444432   


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .+.|+++++||+|+...  ...+.+.++.+..            ......++++||++|.|++++++.+.+.+
T Consensus       115 ~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~------------~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          115 GKAPVILAVNKVDNVQE--KADLLPHLQFLAS------------QMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             SSSCEEEEEESTTTCCC--HHHHHHHHHHHHT------------TSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             cCCCEEEEEECcccCcc--HHHHHHHHHHHHH------------hcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            57999999999999752  3444444443321            00113799999999999999999998754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.86  E-value=4.2e-21  Score=156.54  Aligned_cols=162  Identities=19%  Similarity=0.187  Sum_probs=105.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC---CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ---PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      .+.++|+++|++|||||||+|+|++..+..   ..+|..                                         
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~-----------------------------------------  203 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRG-----------------------------------------  203 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSC-----------------------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeec-----------------------------------------
Confidence            467899999999999999999998754210   000100                                         


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhh--hHHH-HhhhhccccccceEEEEEECCChh--hhHhhHHHHHHHH
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE--SKSE-LQCLLTDESLASSIVFLVDTSDRE--RFEESKSELQCLL  170 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~--~~~~-~~~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~  170 (249)
                              .....+......+.+|||||......  .... ..........+|++++|+|+++..  ++.....++..+.
T Consensus       204 --------~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~  275 (357)
T 2e87_A          204 --------INVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH  275 (357)
T ss_dssp             --------EEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH
T ss_pred             --------eeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH
Confidence                    00011112245689999999754311  0000 111223345699999999999877  5565555666665


Q ss_pred             hccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          171 TDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       171 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...  .+.|+++|+||+|+......++..+.+....                 .+++++||++|+|++++++++.+.+
T Consensus       276 ~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~iSA~~g~gi~~l~~~i~~~l  334 (357)
T 2e87_A          276 GEF--KDLPFLVVINKIDVADEENIKRLEKFVKEKG-----------------LNPIKISALKGTGIDLVKEEIIKTL  334 (357)
T ss_dssp             HHT--TTSCEEEEECCTTTCCHHHHHHHHHHHHHTT-----------------CCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred             Hhc--CCCCEEEEEECcccCChHHHHHHHHHHHhcC-----------------CCeEEEeCCCCcCHHHHHHHHHHHH
Confidence            432  2799999999999976422333444433322                 6899999999999999999998765

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=6.8e-22  Score=150.55  Aligned_cols=126  Identities=23%  Similarity=0.321  Sum_probs=87.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+.++|+++|++|||||||+++|++..+....++..+.....                                      
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~--------------------------------------   51 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD--------------------------------------   51 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT--------------------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE--------------------------------------
Confidence            467899999999999999999999876543111111110000                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC-ChhhhHhhHHHHHHHHhcc---C
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS-DRERFEESKSELQCLLTDE---S  174 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~-~~~~~~~~~~~~~~~~~~~---~  174 (249)
                                +  ....+.+||+||++.+.......  +......+|++++|+|++ ++.++.....++.+++...   .
T Consensus        52 ----------~--~~~~~~l~Dt~G~~~~~~~~~~~--~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (218)
T 1nrj_B           52 ----------Y--DGSGVTLVDFPGHVKLRYKLSDY--LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC  117 (218)
T ss_dssp             ----------G--GGSSCEEEECCCCGGGTHHHHHH--HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             ----------e--eCceEEEEECCCcHHHHHHHHHH--HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccc
Confidence                      0  23458899999998886655411  111223489999999999 8888888877887776542   2


Q ss_pred             CCCCcEEEEEecCCCCCCCCHH
Q psy871          175 LASCPVLILGNKIDKHGAASEE  196 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~~  196 (249)
                      ..++|+++|+||+|+......+
T Consensus       118 ~~~~p~ilv~nK~Dl~~~~~~~  139 (218)
T 1nrj_B          118 ENGIDILIACNKSELFTARPPS  139 (218)
T ss_dssp             TTCCCEEEEEECTTSTTCCCHH
T ss_pred             cCCCCEEEEEEchHhcccCCHH
Confidence            3689999999999998765533

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=9.2e-22  Score=164.22  Aligned_cols=187  Identities=18%  Similarity=0.193  Sum_probs=108.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +++++|+++|++++|||||+++|+.........+........              ...|+.++..++......... ..
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~--------------~~~g~~~~~~a~~~d~~~~er-~~   79 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREA--------------KEKNRETWYLSWALDTNQEER-DK   79 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHH--------------HhccccchhhhhhhccchhHh-hc
Confidence            567899999999999999999997543322111111000000              111222232222222222111 12


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhh---hH---hhHHHHHHHHhc
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRER---FE---ESKSELQCLLTD  172 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~~---~~~~~~~~~~~~  172 (249)
                      +.+.......+...+..+.+|||||+++|.....      .++..+|++++|+|+++...   |.   ...+.+... ..
T Consensus        80 GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~------~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~  152 (439)
T 3j2k_7           80 GKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMI------GGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT  152 (439)
T ss_pred             CceEEEeEEEEecCCeEEEEEECCChHHHHHHHH------hhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH
Confidence            2333333334455567899999999998866655      66788999999999998532   11   122222222 11


Q ss_pred             cCCCCCc-EEEEEecCCCCCCCC--------HHHHHHHhhhcccccCcccCCCCCCC-CCceeEEEeeeccccchHHHHH
Q psy871          173 ESLASCP-VLILGNKIDKHGAAS--------EEEIRQYFGLYGLTTGKVATPRSEMS-GRPIELFMCSVLMRQGYGDGFR  242 (249)
Q Consensus       173 ~~~~~~p-~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~~l~~  242 (249)
                         .++| +++++||+|+.....        .+++..+++..+            +. ...++++++||++|.|++++.+
T Consensus       153 ---~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          153 ---AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVG------------FNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ---cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhc------------ccccCCeeEEEeeccCCcccccccc
Confidence               4677 999999999964211        122333333332            11 1247899999999999998544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=2.2e-21  Score=162.34  Aligned_cols=159  Identities=18%  Similarity=0.150  Sum_probs=96.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ++|+++|.||||||||+|+|++.......++.+.+....                                         
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~-----------------------------------------   40 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPV-----------------------------------------   40 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCS-----------------------------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCcccee-----------------------------------------
Confidence            589999999999999999998765432221111111111                                         


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhh--h-HHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEE--S-KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~--~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                          .......+..+.+|||+|.+....  . .........+++.+|++++|+|+++..+..+  .++..+++.   .++
T Consensus        41 ----~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~  111 (439)
T 1mky_A           41 ----QDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STV  111 (439)
T ss_dssp             ----EEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTC
T ss_pred             ----eEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCC
Confidence                111112244688999999775321  1 1112334467789999999999987644433  244444443   479


Q ss_pred             cEEEEEecCCCCCCCCHHHH-HHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGAASEEEI-RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.... ..+. .++. ...                ..+++++||++|.|++++++++.+.+
T Consensus       112 p~ilv~NK~D~~~~~-~~~~~~~~~-~lg----------------~~~~~~iSA~~g~gv~~L~~~i~~~l  164 (439)
T 1mky_A          112 DTILVANKAENLREF-EREVKPELY-SLG----------------FGEPIPVSAEHNINLDTMLETIIKKL  164 (439)
T ss_dssp             CEEEEEESCCSHHHH-HHHTHHHHG-GGS----------------SCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCcccc-HHHHHHHHH-hcC----------------CCCEEEEeccCCCCHHHHHHHHHHhc
Confidence            999999999985320 1122 2222 112                12589999999999999999997654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.85  E-value=3.5e-22  Score=168.98  Aligned_cols=161  Identities=19%  Similarity=0.229  Sum_probs=106.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++++|+++|++|+|||||+++|++..+. ...+++.......                                     
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~-------------------------------------   44 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAF-------------------------------------   44 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSC-------------------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEE-------------------------------------
Confidence            36789999999999999999999875543 1111111111110                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+ ..+..+.+|||||++.|...+.      .++..+|++++|+|+++....+... .+....    ..+
T Consensus        45 --------~v~~-~~g~~i~~iDTPGhe~f~~~~~------~~~~~aD~vILVVDa~dg~~~qt~e-~l~~~~----~~~  104 (537)
T 3izy_P           45 --------LVSL-PSGEKITFLDTPGHAAFSAMRA------RGTQVTDIVILVVAADDGVMKQTVE-SIQHAK----DAH  104 (537)
T ss_dssp             --------CBCS-SCSSCCBCEECSSSCCTTTSBB------SSSBSBSSCEEECBSSSCCCHHHHH-HHHHHH----TTT
T ss_pred             --------EEEe-CCCCEEEEEECCChHHHHHHHH------HHHccCCEEEEEEECCCCccHHHHH-HHHHHH----HcC
Confidence                    0001 1123578999999999888777      7788999999999999865554432 333322    267


Q ss_pred             CcEEEEEecCCCCCCCC---HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAAS---EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+++++||+|+.+...   .+++... ....           .......+++++||++|.|+++++++|...+
T Consensus       105 vPiIVViNKiDl~~~~~~~v~~~l~~~-~~~~-----------e~~~~~~~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          105 VPIVLAINKCDKAEADPEKVKKELLAY-DVVC-----------EDYGGDVQAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             CCEEECCBSGGGTTTSCCSSSSHHHHT-TSCC-----------CCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             CcEEEEEecccccccchHHHHHHHHhh-hhhH-----------HhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence            89999999999975211   1222211 1000           0112347899999999999999999998754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.85  E-value=5.8e-22  Score=167.59  Aligned_cols=188  Identities=20%  Similarity=0.141  Sum_probs=102.2

Q ss_pred             cccccceecceEEEeccCCcchHHHHHHHhcCCCCCCC---CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcC
Q psy871           13 GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV---PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD   89 (249)
Q Consensus        13 ~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~   89 (249)
                      .++...++.++|+++|++|+|||||+++|++.......   +++....                 ...|+.++..++...
T Consensus        25 ~~l~~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~-----------------~~~g~~~~~~~~~~d   87 (483)
T 3p26_A           25 AFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRES-----------------ETMGKSSFKFAWIMD   87 (483)
T ss_dssp             HHHHHSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC----------------------------------
T ss_pred             HHHhcCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHH-----------------HhcCCCcchhhhhhc
Confidence            34444677899999999999999999999865322111   0110000                 011222222222211


Q ss_pred             Ccc-cccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHh-----hH
Q psy871           90 RLA-QPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEE-----SK  163 (249)
Q Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-----~~  163 (249)
                      ... +.  ..+.+.......+...+..+.+|||||+++|.....      .++..+|++++|+|+++...+..     ..
T Consensus        88 ~~~~e~--~~GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~------~~~~~aD~~llVvDa~~g~~~~~~~~~~qt  159 (483)
T 3p26_A           88 QTNEER--ERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAI------MGISQADMAILCVDCSTNAFESGFDLDGQT  159 (483)
T ss_dssp             ---------CCSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHH------HHHTTCSEEEEEEECCC------CCCCHHH
T ss_pred             cchhHh--hcCcceEeeeEEEecCCceEEEEECCCcHHHHHHHH------HhhhhCCEEEEEEECCCCccccccchhhhH
Confidence            111 11  112222222233445567899999999998876666      67788999999999998644321     11


Q ss_pred             HHHHHHHhccCCCCCcEEEEEecCCCCCC--CCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccch
Q psy871          164 SELQCLLTDESLASCPVLILGNKIDKHGA--ASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGY  237 (249)
Q Consensus       164 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  237 (249)
                      .+...++..  ....|+++|+||+|+.+.  ...+    ++..+++...            .....++++++||++|.|+
T Consensus       160 ~e~~~~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~i~iSA~~g~gi  225 (483)
T 3p26_A          160 KEHMLLASS--LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIG------------FFEDNINWVPISGFSGEGV  225 (483)
T ss_dssp             HHHHHHHHH--TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHT------------CCGGGEEEEECCSSSCTTS
T ss_pred             HHHHHHHHH--cCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcC------------CCcccceEEEEeeecCCCc
Confidence            122222222  123569999999999762  1122    2333333332            1123479999999999999


Q ss_pred             HH
Q psy871          238 GD  239 (249)
Q Consensus       238 ~~  239 (249)
                      ++
T Consensus       226 ~e  227 (483)
T 3p26_A          226 YK  227 (483)
T ss_dssp             SS
T ss_pred             cc
Confidence            85

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.85  E-value=2e-21  Score=162.39  Aligned_cols=159  Identities=14%  Similarity=0.122  Sum_probs=93.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+.++|+++|++|||||||+|+|++.+.....+..+.                                           
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gt-------------------------------------------  258 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGT-------------------------------------------  258 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTC-------------------------------------------
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCe-------------------------------------------
Confidence            4567899999999999999999987543321111111                                           


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHH--HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE--LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~--~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                        ++......+...+..+.+|||||+..+....+.  .......+..+|++++|+|++++.+... ..++..+      .
T Consensus       259 --T~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~  329 (462)
T 3geh_A          259 --TRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------K  329 (462)
T ss_dssp             --CHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------T
T ss_pred             --eEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------c
Confidence              011111111122346899999998765544332  1344567788999999999998765544 2233333      3


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..|+++|+||+|+.......    ..+.+               ....+++++||++|.|+++++++|.+.+
T Consensus       330 ~~piivV~NK~Dl~~~~~~~----~~~~~---------------~~~~~~i~iSAktg~Gi~eL~~~i~~~~  382 (462)
T 3geh_A          330 HRPLILVMNKIDLVEKQLIT----SLEYP---------------ENITQIVHTAAAQKQGIDSLETAILEIV  382 (462)
T ss_dssp             TSCEEEEEECTTSSCGGGST----TCCCC---------------TTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcchhhH----HHHHh---------------ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            47999999999997631111    01110               1236799999999999999999998765

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.85  E-value=6.1e-22  Score=163.53  Aligned_cols=162  Identities=17%  Similarity=0.154  Sum_probs=103.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ...++|+++|++|+|||||+++|++..+....++.+.+....                                      
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~--------------------------------------   73 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPV--------------------------------------   73 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCC--------------------------------------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeE--------------------------------------
Confidence            346799999999999999999998765432111111110000                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                           .....+ .....+.+|||||++.+..... ........+..+|++++|+|++.....   ..++..+..    .+
T Consensus        74 -----~~~~~~-~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~---~~~l~~l~~----~~  140 (423)
T 3qq5_A           74 -----YKSMEL-HPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYE---DDVVNLFKE----ME  140 (423)
T ss_dssp             -----EEEEEE-TTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHH---HHHHHHHHH----TT
T ss_pred             -----EEEEEE-CCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHH---HHHHHHHHh----cC
Confidence                 000001 1123689999999987765432 123344567889999999999333222   224444332    48


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+++|+||+|+......+...++.+..+                 ++++++||++|.|+++++++|.+.+
T Consensus       141 ~piIvV~NK~Dl~~~~~~~~~~~l~~~~g-----------------~~v~~vSAktg~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          141 IPFVVVVNKIDVLGEKAEELKGLYESRYE-----------------AKVLLVSALQKKGFDDIGKTISEIL  194 (423)
T ss_dssp             CCEEEECCCCTTTTCCCTHHHHHSSCCTT-----------------CCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred             CCEEEEEeCcCCCCccHHHHHHHHHHHcC-----------------CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            99999999999987655444444333333                 6899999999999999999998876

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.84  E-value=1.2e-20  Score=159.15  Aligned_cols=165  Identities=15%  Similarity=0.139  Sum_probs=103.3

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .|++++|+++|++++|||||+++|++......       ....    .       .....                   +
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~-------~d~~----~-------~e~~~-------------------G   58 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSA-------HDKL----P-------ESQKR-------------------G   58 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC----------------------------------------------------
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccc-------cccc----c-------ccccC-------------------c
Confidence            36789999999999999999999986541000       0000    0       00000                   1


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhccC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDES  174 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~  174 (249)
                      .  +.......+...+..+.+|||||++.|.....      .++..+|++++|+|+++   +.+...+    . ++..  
T Consensus        59 i--Ti~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~------~~~~~aD~~ilVvda~~g~~~qt~e~l----~-~~~~--  123 (482)
T 1wb1_A           59 I--TIDIGFSAFKLENYRITLVDAPGHADLIRAVV------SAADIIDLALIVVDAKEGPKTQTGEHM----L-ILDH--  123 (482)
T ss_dssp             -------CCCEEEETTEEEEECCCSSHHHHHHHHH------HHTTSCCEEEEEEETTTCSCHHHHHHH----H-HHHH--
T ss_pred             c--EEecceEEEEECCEEEEEEECCChHHHHHHHH------HHHhhCCEEEEEEecCCCccHHHHHHH----H-HHHH--
Confidence            0  10010011112346799999999988765554      67788999999999988   3333332    2 2222  


Q ss_pred             CCCCcEEEEEecCCCCCCCCHHH----HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHGAASEEE----IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       .++|+++++||+|+.++...++    +.++++...             .....+++++||++|.|+++++++|.+.+
T Consensus       124 -~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~-------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~i  187 (482)
T 1wb1_A          124 -FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTH-------------NLKNSSIIPISAKTGFGVDELKNLIITTL  187 (482)
T ss_dssp             -TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSS-------------SGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             -cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhc-------------ccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence             5789999999999986322222    223332220             11247899999999999999999998754

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=1.6e-19  Score=149.65  Aligned_cols=112  Identities=17%  Similarity=0.200  Sum_probs=71.2

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA  193 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  193 (249)
                      ..+.+|||||++.|.....      ..+..+|++++|+|+++........+.+..+ ..  ....|+++++||+|+.+..
T Consensus        81 ~~i~iiDtPGh~~f~~~~~------~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~--l~~~~iivv~NK~Dl~~~~  151 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATML------SGASLMDGAILVIAANEPCPQPQTKEHLMAL-EI--LGIDKIIIVQNKIDLVDEK  151 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHH------TTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HH--TTCCCEEEEEECTTSSCTT
T ss_pred             cEEEEEECCCHHHHHHHHH------HhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HH--cCCCeEEEEEEccCCCCHH
Confidence            5789999999988765444      6778899999999999643111111122222 11  1235899999999997643


Q ss_pred             C----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          194 S----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       194 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .    .+++.++++...              ....+++++||++|.|+++++++|.+.+
T Consensus       152 ~~~~~~~~i~~~l~~~~--------------~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          152 QAEENYEQIKEFVKGTI--------------AENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             TTTTHHHHHHHHHTTST--------------TTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhcC--------------CCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            2    344444444321              2347899999999999999999998754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.84  E-value=1.9e-19  Score=146.48  Aligned_cols=162  Identities=19%  Similarity=0.182  Sum_probs=101.4

Q ss_pred             ce-EEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           22 GK-LLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        22 ~~-i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+ |+++|++|||||||+|+|++..+.   ...+|.++..+.+                                     
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i-------------------------------------  221 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAI-------------------------------------  221 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEE-------------------------------------
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEE-------------------------------------
Confidence            44 999999999999999999876542   1122222221111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhh--hhhHHHHhhhhccccccceEEEEEECCChh--hhHhhHHHHHHHHhcc
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERF--EESKSELQCLLTDESLASSIVFLVDTSDRE--RFEESKSELQCLLTDE  173 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~  173 (249)
                                  .-.+..+.+|||+|....  ....+....++..+..+|++++|+|++++.  ...... .+.+++...
T Consensus       222 ------------~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l  288 (364)
T 2qtf_A          222 ------------PINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQ-SSFEILREI  288 (364)
T ss_dssp             ------------EETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHH
T ss_pred             ------------EECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHh
Confidence                        111245789999996321  122222344556678899999999999876  343332 233444444


Q ss_pred             CCCCCcEEEEEecCCCCCCCCHHH----HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHGAASEEE----IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...+.|+++|+||+|+.+.. ..+    +..+.+.+.              ....+++++||++|.|+++++++|.+.+
T Consensus       289 ~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~--------------~~~~~~~~~SA~~g~gi~~L~~~I~~~l  352 (364)
T 2qtf_A          289 GVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY--------------SPIFDVIPISALKRTNLELLRDKIYQLA  352 (364)
T ss_dssp             TCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC--------------SCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc--------------CCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence            44679999999999997643 222    111222220              0125789999999999999999998754

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.83  E-value=2.4e-20  Score=158.40  Aligned_cols=79  Identities=19%  Similarity=0.254  Sum_probs=58.2

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ..+..+.+|||||+..|.....      .++..+|++++|+|+++....+... .+... ..   .++|+++|+||+|+.
T Consensus        79 ~~~~~i~liDTPG~~df~~~~~------~~l~~aD~allVvDa~~g~~~~t~~-~~~~~-~~---~~iPiivviNK~Dl~  147 (528)
T 3tr5_A           79 YKDYLINLLDTPGHADFTEDTY------RTLTAVDSALMVIDAAKGVEPRTIK-LMEVC-RL---RHTPIMTFINKMDRD  147 (528)
T ss_dssp             ETTEEEEEECCCCSTTCCHHHH------HGGGGCSEEEEEEETTTCSCHHHHH-HHHHH-HT---TTCCEEEEEECTTSC
T ss_pred             eCCEEEEEEECCCchhHHHHHH------HHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH-HH---cCCCEEEEEeCCCCc
Confidence            3467799999999998877655      7788999999999999876655543 33332 22   679999999999997


Q ss_pred             CCCCHHHHHH
Q psy871          191 GAASEEEIRQ  200 (249)
Q Consensus       191 ~~~~~~~~~~  200 (249)
                      .....+.+.+
T Consensus       148 ~~~~~~~l~e  157 (528)
T 3tr5_A          148 TRPSIELLDE  157 (528)
T ss_dssp             CSCHHHHHHH
T ss_pred             cccHHHHHHH
Confidence            6543333333

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.83  E-value=2.3e-20  Score=154.68  Aligned_cols=180  Identities=14%  Similarity=0.130  Sum_probs=105.8

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      -.++.++|+++|++|+|||||+++|++.........      ..                ...+ .+...    ..+.  
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~------~~----------------~~~~-~~d~~----~~e~--   57 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNV------EV----------------KDYG-DIDKA----PEER--   57 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTS------CC----------------CCHH-HHSCS----HHHH--
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccc------cc----------------cchh-hccCC----HHHH--
Confidence            346678999999999999999999976310000000      00                0000 00000    0000  


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      ..+.+.......+...+..+.+|||||+++|.....      .++..+|++++|+|+++....+. .+++... ..   .
T Consensus        58 ~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~------~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~-~~---~  126 (405)
T 2c78_A           58 ARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMI------TGAAQMDGAILVVSAADGPMPQT-REHILLA-RQ---V  126 (405)
T ss_dssp             HHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHH------HHHTTCSSEEEEEETTTCCCHHH-HHHHHHH-HH---T
T ss_pred             HcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHH------HHHHHCCEEEEEEECCCCCcHHH-HHHHHHH-HH---c
Confidence            001111111122333456789999999998865555      66788999999999998654333 3344333 22   5


Q ss_pred             CCc-EEEEEecCCCCCCCC-H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc--------------
Q psy871          177 SCP-VLILGNKIDKHGAAS-E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG--------------  236 (249)
Q Consensus       177 ~~p-~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g--------------  236 (249)
                      ++| +++++||+|+.+... .    +++.++++...            ......+++++||++|.|              
T Consensus       127 ~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~  194 (405)
T 2c78_A          127 GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE------------FPGDEVPVIRGSALLALEQMHRNPKTRRGENE  194 (405)
T ss_dssp             TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT------------SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCH
T ss_pred             CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc------------ccccCCCEEEccHHHhhhhhccccccccCCCc
Confidence            788 889999999985211 1    13334443332            111247899999999988              


Q ss_pred             ----hHHHHHHHhhhc
Q psy871          237 ----YGDGFRWLANYI  248 (249)
Q Consensus       237 ----v~~l~~~l~~~i  248 (249)
                          ++++++.|.+++
T Consensus       195 ~~~~i~~Ll~~l~~~l  210 (405)
T 2c78_A          195 WVDKIWELLDAIDEYI  210 (405)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             ccccHHHHHHHHHhhc
Confidence                788888887654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.8e-21  Score=168.13  Aligned_cols=193  Identities=18%  Similarity=0.156  Sum_probs=105.6

Q ss_pred             hhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCC
Q psy871           11 VLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        11 ~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      ...++.-.+++++|+++|++|+|||||+++|++........++.......      .+   .|.....-..+...+... 
T Consensus       157 l~~~l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~------~~---~g~~~~~~a~~~d~~~~e-  226 (611)
T 3izq_1          157 ISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRES------ET---MGKSSFKFAWIMDQTNEE-  226 (611)
T ss_dssp             ----CCCCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHS------SC---SSSSCCSSSHHHHHHHHH-
T ss_pred             HHHHHhccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhh------hh---ccccccceeeeeccchhh-
Confidence            34455556788999999999999999999998764332111100000000      00   000000001111111100 


Q ss_pred             cccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hh---HhhHH
Q psy871           91 LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RF---EESKS  164 (249)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~---~~~~~  164 (249)
                         .  ..+.+.......+...+..+.+|||||+++|.....      .++..+|++++|+|+++..   ++   ....+
T Consensus       227 ---~--~~GiTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~------~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e  295 (611)
T 3izq_1          227 ---R--ERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAI------MGISQADMAILCVDCSTNAFESGFDLDGQTKE  295 (611)
T ss_dssp             ---H--HTTTCCSCSCCEEECSSCEEEEEECCSSSCHHHHHT------TTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH
T ss_pred             ---h--hCCeeEeeeeEEEecCCceEEEEECCCCcccHHHHH------HHHhhcCceEEEEECCCCcccccchhhhHHHH
Confidence               0  111222222233344566899999999988766555      7788999999999999842   11   11111


Q ss_pred             HHHHHHhccCCCC-CcEEEEEecCCCCCC--CC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccch
Q psy871          165 ELQCLLTDESLAS-CPVLILGNKIDKHGA--AS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGY  237 (249)
Q Consensus       165 ~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  237 (249)
                      .+. ++..   .+ .|+++|+||+|+.+.  ..    .+++..++...+            .....++++++||++|.|+
T Consensus       296 ~l~-~~~~---lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g------------~~~~~~~~i~vSA~tG~gI  359 (611)
T 3izq_1          296 HML-LASS---LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIG------------FFEDNINWVPISGFSGEGV  359 (611)
T ss_dssp             HHH-HHHT---TTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHT------------CCGGGCEEEECCTTTCTTT
T ss_pred             HHH-HHHH---cCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhc------------ccccCccEEeeecccCCCc
Confidence            222 2222   34 459999999999762  11    223333333333            1122478999999999999


Q ss_pred             HHH
Q psy871          238 GDG  240 (249)
Q Consensus       238 ~~l  240 (249)
                      +++
T Consensus       360 ~el  362 (611)
T 3izq_1          360 YKI  362 (611)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            865

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.83  E-value=4.7e-20  Score=158.37  Aligned_cols=185  Identities=17%  Similarity=0.185  Sum_probs=106.3

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCC-CCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP-TLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .+++++|+++|++++|||||+++|++..+....+ .+....+..          ...+     . ......         
T Consensus         2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~----------~~~~-----~-~~~~~~---------   56 (594)
T 1g7s_A            2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGAT----------EIPM-----D-VIEGIC---------   56 (594)
T ss_dssp             EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEE----------EEEH-----H-HHHHHS---------
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeE----------EEee-----c-hhhhhc---------
Confidence            3578999999999999999999998754432222 011011110          0000     0 000000         


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC---hhhhHhhHHHHHHHHhcc
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD---RERFEESKSELQCLLTDE  173 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~  173 (249)
                      +.  ....  .........+.+|||||++.|...+.      .++..+|++++|+|+++   +.++..+.    .+ .. 
T Consensus        57 ~~--~~~~--~~v~~~~~~i~liDTPGhe~F~~~~~------r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l-~~-  120 (594)
T 1g7s_A           57 GD--FLKK--FSIRETLPGLFFIDTPGHEAFTTLRK------RGGALADLAILIVDINEGFKPQTQEALN----IL-RM-  120 (594)
T ss_dssp             CG--GGGG--CGGGGTCCEEEEECCCTTSCCTTSBC------SSSBSCSEEEEEEETTTCCCHHHHHHHH----HH-HH-
T ss_pred             cc--cccc--cccccccCCEEEEECCCcHHHHHHHH------HHHhhCCEEEEEEECCCCccHhHHHHHH----HH-HH-
Confidence            00  0000  00011123589999999999987766      67788999999999999   55554332    22 22 


Q ss_pred             CCCCCcEEEEEecCCCCCCCC--------------HHHH-----------HHHhhhcccccCcccCCCCCCCCCceeEEE
Q psy871          174 SLASCPVLILGNKIDKHGAAS--------------EEEI-----------RQYFGLYGLTTGKVATPRSEMSGRPIELFM  228 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~--------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (249)
                        .++|+++++||+|+.....              .+++           .+.+.......+ ...... .....+++++
T Consensus       121 --~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e-~~~~l~-~~~~~vpvv~  196 (594)
T 1g7s_A          121 --YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESE-RFDRVT-DFASQVSIIP  196 (594)
T ss_dssp             --TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEE-EGGGCS-CTTTEEEEEE
T ss_pred             --cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchH-HHHHHH-hccCcceEEE
Confidence              6799999999999975211              0111           111111110000 000000 0124579999


Q ss_pred             eeeccccchHHHHHHHhhh
Q psy871          229 CSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       229 ~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +||++|.|+++++++|...
T Consensus       197 vSA~tG~GI~eLl~~I~~~  215 (594)
T 1g7s_A          197 ISAITGEGIPELLTMLMGL  215 (594)
T ss_dssp             CCTTTCTTHHHHHHHHHHH
T ss_pred             EeccCCCCchhHHHHHHhh
Confidence            9999999999999998764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.83  E-value=7.7e-20  Score=145.74  Aligned_cols=226  Identities=11%  Similarity=0.040  Sum_probs=112.1

Q ss_pred             HhHHHHhhhcccccc--eecceEEEeccCCcchHHHHHHHhcCCCCCCCC-CCCcccceeeeeee-eceEEEEcCCC---
Q psy871            4 IWDWFTGVLGYLGLW--TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP-TLHPILGYLGLWTK-SGKLLFLGLDN---   76 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~--~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~-t~~~~~~~~~~~~~-~~~~~~~g~~~---   76 (249)
                      +-+.+.+.+..+|..  .+.++|+|+|.+|||||||+|+|++..+..... ........+.+-.. .....+....+   
T Consensus         7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~   86 (299)
T 2aka_B            7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF   86 (299)
T ss_dssp             HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred             HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc
Confidence            445566667777665  567899999999999999999999887642111 11111111100000 00011111111   


Q ss_pred             CchhHHHHHHhcC--CcccccCCcccceeceeccccccceEEEEEeCCCchhh------hhhH-HHHhhhhccccccceE
Q psy871           77 AGKTTLLHMLKDD--RLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF------EESK-SELQCLLTDESLASSI  147 (249)
Q Consensus        77 ~Gkssl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~------~~~~-~~~~~~~~~~~~~d~i  147 (249)
                      .-.......+...  .......+........ .........+.+|||||....      .... ........++..++.+
T Consensus        87 tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~-~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (299)
T 2aka_B           87 TDFEEVRLEIEAETDRVTGTNKGISPVPINL-RVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCL  165 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEE-EEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEE
T ss_pred             CCHHHHHHHHHHHHHHhcccCCCccccceEE-EEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeE
Confidence            1111111111000  0000000100000000 001111246899999996531      1111 1111222455567766


Q ss_pred             E-EEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeE
Q psy871          148 V-FLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIEL  226 (249)
Q Consensus       148 i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (249)
                      + +|+|+++.........++..+ .   ..+.|+++|+||+|+.+...  ...+.++...          ........++
T Consensus       166 il~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~--~~~~~~~~~~----------~~~~~~~~~v  229 (299)
T 2aka_B          166 ILAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGT--DARDVLENKL----------LPLRRGYIGV  229 (299)
T ss_dssp             EEEEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEEECGGGSCTTC--CCHHHHTTCS----------SCCTTCEEEC
T ss_pred             EEEEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEEEccccCCCCc--hHHHHHhCCc----------CcCCCCcEEE
Confidence            5 799998865444332233332 2   25789999999999976422  0111222110          0011123579


Q ss_pred             EEeeeccccchHHHHHHHhh
Q psy871          227 FMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       227 ~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      +++||++|.|+++++++|.+
T Consensus       230 ~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          230 VNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             CCCCCBCTTSCBCHHHHHHH
T ss_pred             ECCChhhccccccHHHHHHH
Confidence            99999999999999998865

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.82  E-value=3.2e-20  Score=153.31  Aligned_cols=116  Identities=16%  Similarity=0.193  Sum_probs=79.0

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecCC
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKID  188 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D  188 (249)
                      ...+..+.+|||||++.|.....      .++..+|++++|+|+++....+... .+.. +..   .++| +++++||+|
T Consensus        62 ~~~~~~~~iiDtpG~~~f~~~~~------~~~~~aD~~ilVvda~~g~~~qt~e-~l~~-~~~---~~vp~iivviNK~D  130 (397)
T 1d2e_A           62 STAARHYAHTDCPGHADYVKNMI------TGTAPLDGCILVVAANDGPMPQTRE-HLLL-ARQ---IGVEHVVVYVNKAD  130 (397)
T ss_dssp             ECSSCEEEEEECSSHHHHHHHHH------HTSSCCSEEEEEEETTTCSCHHHHH-HHHH-HHH---TTCCCEEEEEECGG
T ss_pred             ccCCeEEEEEECCChHHHHHHHH------hhHhhCCEEEEEEECCCCCCHHHHH-HHHH-HHH---cCCCeEEEEEECcc
Confidence            33456789999999998766554      6678999999999999854333322 3322 222   5788 689999999


Q ss_pred             CCCCCC-----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc----------hHHHHHHHhhhc
Q psy871          189 KHGAAS-----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG----------YGDGFRWLANYI  248 (249)
Q Consensus       189 l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g----------v~~l~~~l~~~i  248 (249)
                      +.+...     .+++.++++...            .....++++++||++|.|          ++++++.|.+.+
T Consensus       131 l~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          131 AVQDSEMVELVELEIRELLTEFG------------YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHTT------------SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcC------------CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            975211     123444444332            112247899999999874          889999987754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.82  E-value=2.5e-20  Score=156.46  Aligned_cols=162  Identities=18%  Similarity=0.254  Sum_probs=102.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCC-CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV-PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .|+++|+++|++++|||||+++|++..+.... +.+.                                           
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT-------------------------------------------   38 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGIT-------------------------------------------   38 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCC-------------------------------------------
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCee-------------------------------------------
Confidence            47889999999999999999999764432100 0000                                           


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                        .....  ..+...+..+.+|||||++.|...+.      .++..+|++++|+|+++....+... .+... ..   .+
T Consensus        39 --~~i~~--~~v~~~~~~i~~iDTPGhe~f~~~~~------~~~~~aD~aILVVda~~g~~~qT~e-~l~~~-~~---~~  103 (501)
T 1zo1_I           39 --QHIGA--YHVETENGMITFLDTPGHAAFTSMRA------RGAQATDIVVLVVAADDGVMPQTIE-AIQHA-KA---AQ  103 (501)
T ss_dssp             --CCSSC--CCCCTTSSCCCEECCCTTTCCTTSBC------SSSBSCSSEEEEEETTTBSCTTTHH-HHHHH-HH---TT
T ss_pred             --EeEEE--EEEEECCEEEEEEECCCcHHHHHHHH------HHHhhCCEEEEEeecccCccHHHHH-HHHHH-Hh---cC
Confidence              00000  01111233578999999999887766      7788999999999998843322222 23222 22   67


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +|+++++||+|+..... +++.+.+....       ... +.....++++++||++|.|+++++++|...
T Consensus       104 vPiIVviNKiDl~~~~~-~~v~~~l~~~~-------~~~-~~~~~~~~~v~vSAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          104 VPVVVAVNKIDKPEADP-DRVKNELSQYG-------ILP-EEWGGESQFVHVSAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             CCEEEEEECSSSSTTCC-CCTTCCCCCCC-------CCT-TCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred             ceEEEEEEeccccccCH-HHHHHHHHHhh-------hhH-HHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence            99999999999975311 11111111000       000 111134799999999999999999998753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.82  E-value=3.8e-20  Score=154.85  Aligned_cols=166  Identities=15%  Similarity=0.074  Sum_probs=99.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ..++|+++|++|||||||+|+|++.......+..+.+.                                          
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~------------------------------------------  216 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR------------------------------------------  216 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC----------------------------------------------
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcC------------------------------------------
Confidence            35799999999999999999998765421111111000                                          


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhH-HHH-----hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESK-SEL-----QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~-~~~-----~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                         ......+...+..+.+|||+|..+..... +..     ......+..+|++++|+|+++..+..+.  .+...+.. 
T Consensus       217 ---d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~-  290 (439)
T 1mky_A          217 ---DPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER-  290 (439)
T ss_dssp             -----CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH-
T ss_pred             ---CceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH-
Confidence               00001111123357889999975443332 110     1123456789999999999986555542  33444333 


Q ss_pred             CCCCCcEEEEEecCCCCCCC--CHHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHGAA--SEEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                        .++|+++|+||+|+.+..  ..+++.+.+.. +.             .....+++++||++|.|++++++.+.+.+
T Consensus       291 --~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~SA~~g~gv~~l~~~i~~~~  353 (439)
T 1mky_A          291 --RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY-------------FIDYSPLIFTSADKGWNIDRMIDAMNLAY  353 (439)
T ss_dssp             --TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG-------------GGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             --cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc-------------cCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence              679999999999997632  23444333321 11             01236899999999999999999987643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.82  E-value=1.8e-19  Score=149.60  Aligned_cols=112  Identities=13%  Similarity=0.183  Sum_probs=74.8

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA  193 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  193 (249)
                      ..+.+|||||++.|.....      ..+..+|++++|+|+++........+.+..+...   ...|+++++||+|+.+..
T Consensus        83 ~~i~iiDtPGh~~f~~~~~------~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~  153 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTML------AGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKE  153 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHH------HCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHH
T ss_pred             cEEEEEECCChHHHHHHHH------hhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHH
Confidence            5689999999988765444      6678899999999999643111111122222111   336899999999998632


Q ss_pred             CH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          194 SE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       194 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..    +++.++++..              .....+++++||++|.|+++++++|.+.+
T Consensus       154 ~~~~~~~~i~~~l~~~--------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          154 KALENYRQIKEFIEGT--------------VAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHHHHHHHTTS--------------TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhc--------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            11    2222222211              12347899999999999999999998754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.82  E-value=6.2e-20  Score=143.44  Aligned_cols=169  Identities=10%  Similarity=0.101  Sum_probs=98.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCC--CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP--VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .+.++|+|+|++|||||||+|+|++......  .|+.                                           
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~-------------------------------------------   56 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQT-------------------------------------------   56 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCC-------------------------------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-------------------------------------------
Confidence            4568999999999999999999987653211  1110                                           


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHH-----HhhhhccccccceEEEEEECCChhhh-HhhHHHHHHHH
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE-----LQCLLTDESLASSIVFLVDTSDRERF-EESKSELQCLL  170 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~  170 (249)
                         .+...........+..+.+|||||+..+......     ......++..+|++++|+|+++.... ..+..++.++.
T Consensus        57 ---~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~  133 (260)
T 2xtp_A           57 ---LTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIF  133 (260)
T ss_dssp             ---CCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHH
T ss_pred             ---eeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence               0000000111122456899999998765432221     22333467889999999999862221 11222333332


Q ss_pred             hccCCCCCcEEEEEe-cCCCCCCCCHHH---------HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871          171 TDESLASCPVLILGN-KIDKHGAASEEE---------IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG  240 (249)
Q Consensus       171 ~~~~~~~~p~ivv~n-K~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  240 (249)
                      ..  ....|.++++| |+|+... ...+         +.+.++.+..            ....+..+++||++|.|++++
T Consensus       134 ~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~------------~~~~~~~~~~SA~~~~gv~~l  198 (260)
T 2xtp_A          134 GE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGG------------RICAFNNRAEGSNQDDQVKEL  198 (260)
T ss_dssp             CG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTT------------CEEECCTTCCHHHHHHHHHHH
T ss_pred             Cc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCC------------eEEEecCcccccccHHHHHHH
Confidence            11  01467777777 9999753 3322         2223443330            000011188999999999999


Q ss_pred             HHHHhhhc
Q psy871          241 FRWLANYI  248 (249)
Q Consensus       241 ~~~l~~~i  248 (249)
                      +++|.+.+
T Consensus       199 ~~~i~~~~  206 (260)
T 2xtp_A          199 MDCIEDLL  206 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.82  E-value=1.6e-19  Score=154.75  Aligned_cols=111  Identities=18%  Similarity=0.207  Sum_probs=82.2

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      ....+.+|||||+..|.....      .++..+|++++|+|+++....+....+....  .   .++|+++++||+|+..
T Consensus        71 ~~~~inliDTPGh~dF~~ev~------r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~--~---~~ipiIvviNKiDl~~  139 (600)
T 2ywe_A           71 NTYKLHLIDTPGHVDFSYEVS------RALAACEGALLLIDASQGIEAQTVANFWKAV--E---QDLVIIPVINKIDLPS  139 (600)
T ss_dssp             CEEEEEEECCCCSGGGHHHHH------HHHHTCSEEEEEEETTTBCCHHHHHHHHHHH--H---TTCEEEEEEECTTSTT
T ss_pred             CeEEEEEEECCCcHhHHHHHH------HHHHhCCEEEEEEECCCCccHHHHHHHHHHH--H---CCCCEEEEEeccCccc
Confidence            346788999999999877655      5678899999999999987766654333322  2   6899999999999987


Q ss_pred             CCCHHHHHHHhh-hcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          192 AASEEEIRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       192 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .. .++..+.+. .+.              ....+++++||++|.|++++++++.+.+
T Consensus       140 a~-~~~v~~el~~~lg--------------~~~~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          140 AD-VDRVKKQIEEVLG--------------LDPEEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             CC-HHHHHHHHHHTSC--------------CCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             cC-HHHHHHHHHHhhC--------------CCcccEEEEEeecCCCchHHHHHHHHhc
Confidence            53 333333332 222              1123589999999999999999998765

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.82  E-value=9.7e-20  Score=156.29  Aligned_cols=112  Identities=18%  Similarity=0.163  Sum_probs=82.4

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+..+.+|||||+..|.....      .++..+|++++|+|+++...++....+.... .    .++|+++++||+|+..
T Consensus        69 ~~~~l~liDTPGh~dF~~ev~------~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~  137 (599)
T 3cb4_D           69 ETYQLNFIDTPGHVDFSYEVS------RSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPA  137 (599)
T ss_dssp             CEEEEEEEECCCCGGGHHHHH------HHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTT
T ss_pred             CeEEEEEEECCCchHHHHHHH------HHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccc
Confidence            346789999999998877666      6678899999999999977766655443332 2    5789999999999987


Q ss_pred             CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          192 AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ....+...++.+.+.              ....+++++||++|.|++++++++.+.+
T Consensus       138 a~~~~v~~ei~~~lg--------------~~~~~vi~vSAktg~GI~~Ll~~I~~~l  180 (599)
T 3cb4_D          138 ADPERVAEEIEDIVG--------------IDATDAVRCSAKTGVGVQDVLERLVRDI  180 (599)
T ss_dssp             CCHHHHHHHHHHHTC--------------CCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHhC--------------CCcceEEEeecccCCCchhHHHHHhhcC
Confidence            532222333333322              1113589999999999999999998765

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.82  E-value=4.7e-22  Score=171.25  Aligned_cols=192  Identities=16%  Similarity=0.142  Sum_probs=88.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++.++|+++|++|+|||||+++|+.........+.....              ......|+.++...+....+.... ..
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~--------------~~~~~~g~~~~~~~~~~D~~~~E~-~~  239 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLH--------------NEAANSGKGSFSYAWLLDTTEEER-AR  239 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHH--------------HhHhhcCCcchhhhhhhccchhhh-cC
Confidence            456799999999999999999997543221111110000              001112333332222222221110 11


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hh--Hh-hHHHHHHHHhc
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RF--EE-SKSELQCLLTD  172 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~--~~-~~~~~~~~~~~  172 (249)
                      +.+.......+...+..+.+|||||++.|.....      .++..+|++++|+|+++..   ++  .. ..+.+. ++..
T Consensus       240 GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~------~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-~~~~  312 (592)
T 3mca_A          240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMI------AGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-LLRA  312 (592)
T ss_dssp             -------------------CCEEESSSEEEEECC------C-------CCSEEEEEECCSSTTSCSCSSHHHHHH-HHHH
T ss_pred             CeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHH------HHHhhCCEEEEEEECCCCccccccccchHHHHHHH-HHHH
Confidence            2222222233334456789999999998866554      6778899999999998743   22  11 111222 2222


Q ss_pred             cCCCCCc-EEEEEecCCCCCC--CCH----HHHHHHh-hhcccccCcccCCCCCCCCCceeEEEeeeccccchH------
Q psy871          173 ESLASCP-VLILGNKIDKHGA--ASE----EEIRQYF-GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG------  238 (249)
Q Consensus       173 ~~~~~~p-~ivv~nK~Dl~~~--~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~------  238 (249)
                         .++| +++|+||+|+.+.  ...    +++..++ +..+            .....++++++||++|.|++      
T Consensus       313 ---lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g------------~~~~~~~ii~iSA~~G~gI~e~~~~~  377 (592)
T 3mca_A          313 ---LGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVG------------FKTSNVHFVPISAISGTNLIQKDSSD  377 (592)
T ss_dssp             ---SSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSC------------CCGGGEEEEEECSSSCSSSCSCCCCG
T ss_pred             ---cCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhC------------CCccceEEEEEecccCcccccccccc
Confidence               4666 9999999999752  111    2222322 2222            22234789999999999998      


Q ss_pred             --------HHHHHHhhh
Q psy871          239 --------DGFRWLANY  247 (249)
Q Consensus       239 --------~l~~~l~~~  247 (249)
                              .|++.|.+.
T Consensus       378 ~~~w~~g~~Lle~l~~~  394 (592)
T 3mca_A          378 LYKWYKGPTLLSALDQL  394 (592)
T ss_dssp             GGGTCCSCCHHHHHHTS
T ss_pred             cccccchHHHHHHHHhh
Confidence                    788877654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.81  E-value=7.4e-19  Score=146.77  Aligned_cols=186  Identities=18%  Similarity=0.149  Sum_probs=100.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++.++|+++|++++|||||+++|++...........    .+..  ........+... .....+..+....      ..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~----~i~~--~s~~~gt~~~~~-~~~~~~d~~~~E~------~r   88 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLE----AITR--DSKKSGTTGDDV-DLALLVDGLQAER------EQ   88 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------------CCC---CHHHHHHHHC----------
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhh----hhhh--hhhccCccccch-hhhhhhccChhHH------HC
Confidence            456899999999999999999998754221111100    0000  000000001110 1111122221110      01


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                      +.+.......+......+.+|||||++.|.....      .++..+|++++|+|+++....+. .+++... ..   .+.
T Consensus        89 GiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~------~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~-~~---~~~  157 (434)
T 1zun_B           89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMA------TGASTCDLAIILVDARYGVQTQT-RRHSYIA-SL---LGI  157 (434)
T ss_dssp             -CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHH------HHHTTCSEEEEEEETTTCSCHHH-HHHHHHH-HH---TTC
T ss_pred             CcEEEeeeeEeecCCceEEEEECCChHHHHHHHH------HHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HH---cCC
Confidence            1111122223344456799999999998876655      56789999999999998643332 2233222 22   344


Q ss_pred             -cEEEEEecCCCCCCCC--H----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871          179 -PVLILGNKIDKHGAAS--E----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG  240 (249)
Q Consensus       179 -p~ivv~nK~Dl~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  240 (249)
                       |+++|+||+|+.+...  .    +++.++++...            ......+++++||++|.|++++
T Consensus       158 ~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g------------~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          158 KHIVVAINKMDLNGFDERVFESIKADYLKFAEGIA------------FKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             CEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTT------------CCCSEEEEEECCTTTCTTTSSC
T ss_pred             CeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhC------------CCccCceEEEEeccCCCCcccc
Confidence             6999999999976311  1    22222222221            1123478999999999999873

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.81  E-value=9e-20  Score=136.07  Aligned_cols=133  Identities=23%  Similarity=0.320  Sum_probs=90.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+.++|+++|++|||||||+++|++..+....++..+...                                        
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~----------------------------------------   85 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA----------------------------------------   85 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------------------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee----------------------------------------
Confidence            5678999999999999999999988654321111000000                                        


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC-ChhhhHhhHHHHHHHHhcc---C
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS-DRERFEESKSELQCLLTDE---S  174 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~-~~~~~~~~~~~~~~~~~~~---~  174 (249)
                         ...       ....+.+||+||++.+......  .+...+..+|++++|+|++ +..++.....++..++...   .
T Consensus        86 ---~~~-------~~~~~~l~Dt~G~~~~~~~~~~--~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (193)
T 2ged_A           86 ---ADY-------DGSGVTLVDFPGHVKLRYKLSD--YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC  153 (193)
T ss_dssp             ----CC-------CCTTCSEEEETTCCBSSCCHHH--HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ---eee-------cCCeEEEEECCCCchHHHHHHH--HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhcc
Confidence               000       2235788999999877655441  1112334589999999999 8888888877777776532   2


Q ss_pred             CCCCcEEEEEecCCCCCCCCHHHHHHHhh
Q psy871          175 LASCPVLILGNKIDKHGAASEEEIRQYFG  203 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  203 (249)
                      ..+.|+++|+||+|+.+....+++.+.+.
T Consensus       154 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~  182 (193)
T 2ged_A          154 ENGIDILIACNKSELFTARPPSKIKDALE  182 (193)
T ss_dssp             TTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred             ccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence            25799999999999988766666665554

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.81  E-value=1.7e-20  Score=156.64  Aligned_cols=113  Identities=12%  Similarity=0.228  Sum_probs=73.2

Q ss_pred             ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHH---HHHHHHhccCCCCC-cEEEEE
Q psy871          109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKS---ELQCLLTDESLASC-PVLILG  184 (249)
Q Consensus       109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~-p~ivv~  184 (249)
                      +...+..+.+|||||+++|.....      .++..+|++++|+|+++ .+|.....   ...+.+......+. |+++++
T Consensus        79 ~~~~~~~~~iiDtpG~~~f~~~~~------~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi  151 (435)
T 1jny_A           79 FETKKYFFTIIDAPGHRDFVKNMI------TGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAV  151 (435)
T ss_dssp             EECSSCEEEECCCSSSTTHHHHHH------HTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred             EecCCeEEEEEECCCcHHHHHHHH------hhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence            344566799999999999876655      67789999999999998 44542211   11121111111344 689999


Q ss_pred             ecCCCCCCC-C-------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871          185 NKIDKHGAA-S-------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG  240 (249)
Q Consensus       185 nK~Dl~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  240 (249)
                      ||+|+.+.. .       .+++.++++...            .....++++++||++|.|+.++
T Consensus       152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYG------------FNTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             ECGGGSSSTTCHHHHHHHHHHHHHHHHHTT------------CCCTTCEEEECBTTTTBTTTBC
T ss_pred             EcccCCCccccHHHHHHHHHHHHHHHHHcC------------CCcCCceEEEeecccCcccccc
Confidence            999998631 1       233444444332            1112478999999999999743

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.80  E-value=2.2e-19  Score=146.40  Aligned_cols=113  Identities=9%  Similarity=-0.021  Sum_probs=74.5

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE-EEEEe-cCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV-LILGN-KIDKH  190 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~  190 (249)
                      +..+.+|||||+++|.....      ..+..+|++++|+| ++. ......+++... ..   .++|. ++++| |+|+ 
T Consensus        59 ~~~i~iiDtPGh~~f~~~~~------~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~-~~---~~i~~~ivvvNNK~Dl-  125 (370)
T 2elf_A           59 GRNMVFVDAHSYPKTLKSLI------TALNISDIAVLCIP-PQG-LDAHTGECIIAL-DL---LGFKHGIIALTRSDST-  125 (370)
T ss_dssp             SSEEEEEECTTTTTCHHHHH------HHHHTCSEEEEEEC-TTC-CCHHHHHHHHHH-HH---TTCCEEEEEECCGGGS-
T ss_pred             CeEEEEEECCChHHHHHHHH------HHHHHCCEEEEEEc-CCC-CcHHHHHHHHHH-HH---cCCCeEEEEEEeccCC-
Confidence            45699999999998865554      56688999999999 542 233333333332 22   56787 99999 9999 


Q ss_pred             CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEE--eeecc---ccchHHHHHHHhhhc
Q psy871          191 GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFM--CSVLM---RQGYGDGFRWLANYI  248 (249)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~---g~gv~~l~~~l~~~i  248 (249)
                      +....++..+.++.+..          ......+++++  +||++   |.|++++++.|.+.+
T Consensus       126 ~~~~~~~~~~~i~~~l~----------~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~  178 (370)
T 2elf_A          126 HMHAIDELKAKLKVITS----------GTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA  178 (370)
T ss_dssp             CHHHHHHHHHHHHHHTT----------TSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH----------hcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence            53212222222222210          01123479999  99999   999999999988764

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.79  E-value=4.5e-20  Score=155.19  Aligned_cols=108  Identities=16%  Similarity=0.227  Sum_probs=64.6

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hhH---hhHHHHHHHHhccCCCCCc-EEEEE
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RFE---ESKSELQCLLTDESLASCP-VLILG  184 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~ivv~  184 (249)
                      .+..+.+|||||++.|.....      .++..+|++++|+|+++..   +|.   ...+.+... ..   .++| +++++
T Consensus       119 ~~~~~~iiDtPGh~~f~~~~~------~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~---~~vp~iivvi  188 (467)
T 1r5b_A          119 EHRRFSLLDAPGHKGYVTNMI------NGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVI  188 (467)
T ss_dssp             SSEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEE
T ss_pred             CCeEEEEEECCCcHHHHHHHH------hhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HH---cCCCEEEEEE
Confidence            456799999999998876655      6778999999999999852   332   122222222 22   5677 99999


Q ss_pred             ecCCCCCCC-CH-------HHHHHHhhhc-ccccCcccCCCCCCC-CCceeEEEeeeccccchHHHH
Q psy871          185 NKIDKHGAA-SE-------EEIRQYFGLY-GLTTGKVATPRSEMS-GRPIELFMCSVLMRQGYGDGF  241 (249)
Q Consensus       185 nK~Dl~~~~-~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~~l~  241 (249)
                      ||+|+.... ..       +++.++++.. .            +. ...++++++||++|.|+++++
T Consensus       189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g------------~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAG------------YNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ECccCCCccccHHHHHHHHHHHHHHHHHhcC------------CCccCCceEEeccccccccccccc
Confidence            999996521 22       2344444433 2            10 114789999999999998754

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.78  E-value=8.4e-19  Score=157.49  Aligned_cols=117  Identities=16%  Similarity=0.235  Sum_probs=80.8

Q ss_pred             ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecC
Q psy871          109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKI  187 (249)
Q Consensus       109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~  187 (249)
                      ++.....+.+|||||+++|.....      .++..+|++++|+|+++....+. .+++..+ ..   .++| +++++||+
T Consensus       354 f~~~~~kI~IIDTPGHedF~~~mi------~gas~AD~aILVVDAtdGv~~QT-rEhL~ll-~~---lgIP~IIVVINKi  422 (1289)
T 3avx_A          354 YDTPTRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVAATDGPMPQT-REHILLG-RQ---VGVPYIIVFLNKC  422 (1289)
T ss_dssp             EECSSCEEEEEECCCHHHHHHHHH------HTSCCCSEEEEEEETTTCSCTTH-HHHHHHH-HH---HTCSCEEEEEECC
T ss_pred             EcCCCEEEEEEECCChHHHHHHHH------HHHhhCCEEEEEEcCCccCcHHH-HHHHHHH-HH---cCCCeEEEEEeec
Confidence            334456799999999998865554      67889999999999998644333 2233333 22   4688 78999999


Q ss_pred             CCCCCCC-----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc--------cchHHHHHHHhhhc
Q psy871          188 DKHGAAS-----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR--------QGYGDGFRWLANYI  248 (249)
Q Consensus       188 Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g--------~gv~~l~~~l~~~i  248 (249)
                      |+.+...     .+++.++++...            .....++++++||++|        .|++++++.|.+.+
T Consensus       423 DLv~d~e~le~i~eEi~elLk~~G------------~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          423 DMVDDEELLELVEMEVRELLSQYD------------FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHTT------------SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ccccchhhHHHHHHHHHHHHHhcc------------ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            9985311     123444444332            1123478999999999        57999999988754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.78  E-value=1.7e-18  Score=133.52  Aligned_cols=166  Identities=13%  Similarity=0.138  Sum_probs=92.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCC-CCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP-VPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.++|+|+|++|||||||+|+|++..+... .++.+.....                                      
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~--------------------------------------   68 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKC--------------------------------------   68 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSC--------------------------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeE--------------------------------------
Confidence            5678999999999999999999998665321 1110100000                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhh-----hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-----SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTD  172 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-----~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~  172 (249)
                             ........+..+.+|||||......     .......+...+..+|++++|+|+++.....  ..++..+...
T Consensus        69 -------~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~  139 (239)
T 3lxx_A           69 -------EKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKM  139 (239)
T ss_dssp             -------EEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHH
T ss_pred             -------EEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHH
Confidence                   0011112245689999999653221     1122233335567789999999997643321  1123333211


Q ss_pred             cC-CCCCcEEEEEecCCCCCCCCHH--------HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeec-----cccchH
Q psy871          173 ES-LASCPVLILGNKIDKHGAASEE--------EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL-----MRQGYG  238 (249)
Q Consensus       173 ~~-~~~~p~ivv~nK~Dl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-----~g~gv~  238 (249)
                      .. ....|+++|+||+|+......+        .+...++.+.                 ..++.+++.     +..++.
T Consensus       140 ~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~v~  202 (239)
T 3lxx_A          140 FGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG-----------------DRYCALNNKATGAEQEAQRA  202 (239)
T ss_dssp             HHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS-----------------SSEEECCTTCCHHHHHHHHH
T ss_pred             hhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC-----------------CEEEEEECCCCccccHHHHH
Confidence            10 0246999999999997643222        3455555544                 345556554     347899


Q ss_pred             HHHHHHhhhc
Q psy871          239 DGFRWLANYI  248 (249)
Q Consensus       239 ~l~~~l~~~i  248 (249)
                      ++++.+.+.+
T Consensus       203 ~ll~~i~~~~  212 (239)
T 3lxx_A          203 QLLGLIQRVV  212 (239)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998877653

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.78  E-value=6e-19  Score=148.02  Aligned_cols=110  Identities=13%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hhH---hhHHHHHHHHhccCCCCCc-EE
Q psy871          109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RFE---ESKSELQCLLTDESLASCP-VL  181 (249)
Q Consensus       109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-~i  181 (249)
                      +...+..+.+|||||++.|.....      .++..+|++++|+|+++..   +|.   ...+.+.. +..   .++| ++
T Consensus        80 ~~~~~~~~~iiDtPGh~~f~~~~~------~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~-~~~---~~v~~ii  149 (458)
T 1f60_A           80 FETPKYQVTVIDAPGHRDFIKNMI------TGTSQADCAILIIAGGVGEFEAGISKDGQTREHALL-AFT---LGVRQLI  149 (458)
T ss_dssp             EECSSEEEEEEECCCCTTHHHHHH------HSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH-HHH---TTCCEEE
T ss_pred             EecCCceEEEEECCCcHHHHHHHH------hhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHH-HHH---cCCCeEE
Confidence            344567899999999998876655      7788999999999999853   332   22222222 222   4566 99


Q ss_pred             EEEecCCCCCC--CC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871          182 ILGNKIDKHGA--AS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG  240 (249)
Q Consensus       182 vv~nK~Dl~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  240 (249)
                      +++||+|+.+.  ..    .+++.++++...            .....++++++||++|.|++++
T Consensus       150 vviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          150 VAVNKMDSVKWDESRFQEIVKETSNFIKKVG------------YNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             EEEECGGGGTTCHHHHHHHHHHHHHHHHHHT------------CCGGGCCEEECCTTTCBTTTBC
T ss_pred             EEEEccccccCCHHHHHHHHHHHHHHHHHcC------------CCccCceEEEeecccCcCcccc
Confidence            99999999841  11    123333333332            1112378999999999998743

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.78  E-value=6.2e-19  Score=138.71  Aligned_cols=169  Identities=14%  Similarity=0.106  Sum_probs=82.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCCCC-CCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPV-PTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .++|+|+|.+|+|||||+|+|++....... |...   ...                                  .++..
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~---~~~----------------------------------~~t~~   50 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPS---HRI----------------------------------KKTVQ   50 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHSSSCC----------------------------------------------------CC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcc---ccc----------------------------------CCceE
Confidence            579999999999999999999765433110 0000   000                                  00111


Q ss_pred             cceeceeccccccceEEEEEeCCCchh-------hhhhHHHH----hhhhc----------cccccceEEEEEECCChhh
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRER-------FEESKSEL----QCLLT----------DESLASSIVFLVDTSDRER  158 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~-------~~~~~~~~----~~~~~----------~~~~~d~ii~v~d~~~~~~  158 (249)
                      ...........+....+.+|||||...       +..+...+    ..++.          ...++|+++++++.+....
T Consensus        51 ~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~  130 (274)
T 3t5d_A           51 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL  130 (274)
T ss_dssp             CEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSC
T ss_pred             EEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCC
Confidence            111111111122334799999999732       22222100    11111          1134789999997765322


Q ss_pred             hHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHH----HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc
Q psy871          159 FEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEE----IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR  234 (249)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  234 (249)
                      ...-...+..+ .    .++|+++|+||+|+........    +.+.+...                 .++++++||+++
T Consensus       131 ~~~d~~~l~~l-~----~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~-----------------~i~v~~~sa~~~  188 (274)
T 3t5d_A          131 KPLDIEFMKRL-H----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEH-----------------KIKIYEFPETDD  188 (274)
T ss_dssp             CHHHHHHHHHH-T----TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHT-----------------TCCCCCC-----
T ss_pred             CHHHHHHHHHH-h----ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHc-----------------CCeEEcCCCCCC
Confidence            11112233333 2    2799999999999975322222    22222222                 277999999999


Q ss_pred             cchHHHHHHHhhhc
Q psy871          235 QGYGDGFRWLANYI  248 (249)
Q Consensus       235 ~gv~~l~~~l~~~i  248 (249)
                      +|+++++++|.+.+
T Consensus       189 ~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          189 EEENKLVKKIKDRL  202 (274)
T ss_dssp             ------CHHHHHTC
T ss_pred             hhHHHHHHHHhcCC
Confidence            99999999998754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.78  E-value=1.9e-18  Score=138.73  Aligned_cols=230  Identities=11%  Similarity=0.079  Sum_probs=112.0

Q ss_pred             hHhHHHHhhhcccccc-eecceEEEeccCCcchHHHHHHHhcCCCCCCCC---CCCccc-ceeeee------eeeceEEE
Q psy871            3 QIWDWFTGVLGYLGLW-TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP---TLHPIL-GYLGLW------TKSGKLLF   71 (249)
Q Consensus         3 ~~~~~~~~~~~~~~~~-~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~---t~~~~~-~~~~~~------~~~~~~~~   71 (249)
                      .+.+++.+.+..+|.. .+.++|+|+|++|||||||+|+|++..+.....   |..+.. .....+      ....-..+
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~   84 (315)
T 1jwy_B            5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEF   84 (315)
T ss_dssp             HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEE
T ss_pred             HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhh
Confidence            3667788888888876 677899999999999999999999887631111   111100 000000      00000011


Q ss_pred             EcCCCC---chhHHHHHHhcC--CcccccCCcccceeceeccccccceEEEEEeCCCchhhh------hhH-HHHhhhhc
Q psy871           72 LGLDNA---GKTTLLHMLKDD--RLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE------ESK-SELQCLLT  139 (249)
Q Consensus        72 ~g~~~~---Gkssl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~------~~~-~~~~~~~~  139 (249)
                      ...+..   ....+...+...  .......+........ ..+......+.+|||||.....      ... ........
T Consensus        85 ~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~  163 (315)
T 1jwy_B           85 LHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINL-KIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMA  163 (315)
T ss_dssp             SSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEE-EEEETTSCSEEEEECCCCC---------CSHHHHHHHHHH
T ss_pred             hcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEE-EEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHH
Confidence            111100   001111111000  0000000000000000 0111223469999999975411      111 12233446


Q ss_pred             cccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCC
Q psy871          140 DESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEM  219 (249)
Q Consensus       140 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (249)
                      ++..+|++++|+|+++..........+...+.   ..+.|+++|+||+|+.....  +..+.++...          ...
T Consensus       164 ~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~----------~~~  228 (315)
T 1jwy_B          164 YIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGT--DAMEVLTGRV----------IPL  228 (315)
T ss_dssp             HHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSC--CCHHHHTTSS----------SCC
T ss_pred             HHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcch--HHHHHHhCCC----------ccC
Confidence            77889999999998543211111112233332   25799999999999976432  1122222110          001


Q ss_pred             CCCceeEEEeeecc---ccchHHHHHHHhhhc
Q psy871          220 SGRPIELFMCSVLM---RQGYGDGFRWLANYI  248 (249)
Q Consensus       220 ~~~~~~~~~~Sa~~---g~gv~~l~~~l~~~i  248 (249)
                      .....++..+||.+   +.|++++++.+.+.+
T Consensus       229 ~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~  260 (315)
T 1jwy_B          229 TLGFIGVINRSQEDIIAKKSIRESLKSEILYF  260 (315)
T ss_dssp             TTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred             CCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence            12235566667777   789999998876654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.77  E-value=1.2e-17  Score=146.38  Aligned_cols=212  Identities=18%  Similarity=0.172  Sum_probs=111.9

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCC--CCCCCcccceeeeeeeeceEEEEcCCCCc-----hhHH--------
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP--VPTLHPILGYLGLWTKSGKLLFLGLDNAG-----KTTL--------   82 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~g~~~~G-----kssl--------   82 (249)
                      ..+.++|+|+|++|+|||||+|+|++..+...  .|+..... .+... ..........++..     -..+        
T Consensus        66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~-~i~~g-~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~  143 (695)
T 2j69_A           66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLT-VLRYG-PEKKVTIHFNDGKSPQQLDFQNFKYKYTIDP  143 (695)
T ss_dssp             HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCE-EEEEC-SSCEEEEEESSSCCCCEEEHHHHHHHSCCCH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceE-EEEeC-CCCeEEEEEcCCCcccccChhhhhhhhcCCH
Confidence            45788999999999999999999998875432  22221111 11110 11122221111110     0000        


Q ss_pred             --HHHHhcCCcccccCCcccceeceecccccc--ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhh
Q psy871           83 --LHMLKDDRLAQPVPTLHPTRRVWKDYFPAV--DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRER  158 (249)
Q Consensus        83 --~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~  158 (249)
                        ...+....     ............+++..  ...+.+|||||.........   ....++..+|++++|+|++++.+
T Consensus       144 ~~~~~l~~~~-----~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~---~~~~~i~~aD~vL~Vvda~~~~s  215 (695)
T 2j69_A          144 AEAKKLEQEK-----KQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNE---LSLGYVNNCHAILFVMRASQPCT  215 (695)
T ss_dssp             HHHHHHHTSS-----CCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHH---HHTHHHHSSSEEEEEEETTSTTC
T ss_pred             HHHHHHhhcc-----ccccccceEEEEEccchhccCCeEEEECCCCCchhhHHH---HHHHHHHhCCEEEEEEeCCCccc
Confidence              11111100     00011111111112211  13489999999776443222   23356678999999999998876


Q ss_pred             hHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC-----CHHH-------HHHHhh-hcccccCcccCCCCCCCCCcee
Q psy871          159 FEESKSELQCLLTDESLASCPVLILGNKIDKHGAA-----SEEE-------IRQYFG-LYGLTTGKVATPRSEMSGRPIE  225 (249)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  225 (249)
                      ..+... +...+..   .+.|+++|+||+|+....     ..++       +.+... ......     ..........+
T Consensus       216 ~~e~~~-l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~-----~~~g~~~~~~~  286 (695)
T 2j69_A          216 LGERRY-LENYIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYC-----TVEGQNIYDER  286 (695)
T ss_dssp             HHHHHH-HHHHTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGG-----BSSSCBCGGGT
T ss_pred             hhHHHH-HHHHHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhh-----cccccccCCCc
Confidence            665432 3323222   478999999999986431     1111       211111 010000     00001112357


Q ss_pred             EEEeeec--------------cccchHHHHHHHhhhc
Q psy871          226 LFMCSVL--------------MRQGYGDGFRWLANYI  248 (249)
Q Consensus       226 ~~~~Sa~--------------~g~gv~~l~~~l~~~i  248 (249)
                      +++|||+              ++.|+++++..|.+.+
T Consensus       287 v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l  323 (695)
T 2j69_A          287 VFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL  323 (695)
T ss_dssp             EEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred             EEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence            9999999              9999999999988754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.76  E-value=2.3e-18  Score=141.81  Aligned_cols=161  Identities=19%  Similarity=0.206  Sum_probs=100.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..|+|+|++|||||||+++|++....   ...+|..+..+.+                                      
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V--------------------------------------  199 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV--------------------------------------  199 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE--------------------------------------
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEE--------------------------------------
Confidence            46899999999999999999875321   1111222111111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-CCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE-SLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~  176 (249)
                               .+. ....+.++|+||...... .......++..+.+++.+++++|++ ...+..+..+..++.... ...
T Consensus       200 ---------~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~  268 (416)
T 1udx_A          200 ---------EVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALL  268 (416)
T ss_dssp             ---------ECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHH
T ss_pred             ---------Eec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhh
Confidence                     001 124578999999753211 1111223455667899999999998 445555544444443221 123


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..|.++++||+|+...   +.+..+.+...              ....+++++||++++|+++++++|.+.+
T Consensus       269 ~~P~ILVlNKlDl~~~---~~~~~l~~~l~--------------~~g~~vi~iSA~~g~gi~eL~~~i~~~l  323 (416)
T 1udx_A          269 RRPSLVALNKVDLLEE---EAVKALADALA--------------REGLAVLPVSALTGAGLPALKEALHALV  323 (416)
T ss_dssp             HSCEEEEEECCTTSCH---HHHHHHHHHHH--------------TTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCChhhH---HHHHHHHHHHH--------------hcCCeEEEEECCCccCHHHHHHHHHHHH
Confidence            6899999999999764   22333222221              0126899999999999999999998765

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.76  E-value=6.7e-18  Score=127.59  Aligned_cols=161  Identities=20%  Similarity=0.194  Sum_probs=94.5

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +..+|+++|++|||||||+++|++..+. ...|+.+....                                        
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~----------------------------------------   64 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL----------------------------------------   64 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CC----------------------------------------
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee----------------------------------------
Confidence            4568999999999999999999876521 11222211100                                        


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhh-------hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFE-------ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~-------~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                         ....  .+.  + .+.+||+||.....       ........++.....++.+++++|+++..+....  .+..++.
T Consensus        65 ---~~~~--~~~--~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~  134 (210)
T 1pui_A           65 ---INLF--EVA--D-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAV  134 (210)
T ss_dssp             ---EEEE--EEE--T-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHH
T ss_pred             ---eEEE--Eec--C-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHH
Confidence               0000  001  1 36789999974321       1111122233334678999999999886544321  2233333


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          172 DESLASCPVLILGNKIDKHGAASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      .   .++|++++.||+|+.+...+    ..+...+....               ..+.++++||+++.|+++++++|.+.
T Consensus       135 ~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Sal~~~~~~~l~~~l~~~  196 (210)
T 1pui_A          135 D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN---------------GDVQVETFSSLKKQGVDKLRQKLDTW  196 (210)
T ss_dssp             H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC---------------SCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC---------------CCCceEEEeecCCCCHHHHHHHHHHH
Confidence            2   57899999999998763211    22233332221               23688999999999999999999875


Q ss_pred             c
Q psy871          248 I  248 (249)
Q Consensus       248 i  248 (249)
                      +
T Consensus       197 ~  197 (210)
T 1pui_A          197 F  197 (210)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.75  E-value=2.2e-17  Score=140.33  Aligned_cols=73  Identities=22%  Similarity=0.317  Sum_probs=53.3

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ..+..+.+|||||+..|.....      .++..+|++++|+|+++....+. . .+....   ...++|+++++||+|+.
T Consensus        79 ~~~~~i~liDTPG~~df~~~~~------~~l~~aD~~IlVvDa~~g~~~~t-~-~~~~~~---~~~~ipiivviNK~Dl~  147 (529)
T 2h5e_A           79 YHDCLVNLLDTPGHEDFSEDTY------RTLTAVDCCLMVIDAAKGVEDRT-R-KLMEVT---RLRDTPILTFMNKLDRD  147 (529)
T ss_dssp             ETTEEEEEECCCCSTTCCHHHH------HGGGGCSEEEEEEETTTCSCHHH-H-HHHHHH---TTTTCCEEEEEECTTSC
T ss_pred             ECCeEEEEEECCCChhHHHHHH------HHHHHCCEEEEEEeCCccchHHH-H-HHHHHH---HHcCCCEEEEEcCcCCc
Confidence            3467899999999988876555      66789999999999998543222 1 222222   23689999999999998


Q ss_pred             CCCC
Q psy871          191 GAAS  194 (249)
Q Consensus       191 ~~~~  194 (249)
                      ....
T Consensus       148 ~~~~  151 (529)
T 2h5e_A          148 IRDP  151 (529)
T ss_dssp             CSCH
T ss_pred             cccH
Confidence            7533

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.75  E-value=2.7e-18  Score=143.53  Aligned_cols=158  Identities=20%  Similarity=0.173  Sum_probs=95.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhh-hH-HHHhhhhcccccc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SK-SELQCLLTDESLA  144 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~-~~~~~~~~~~~~~  144 (249)
                      .++.++|.+++|||++++++.+..+....+.++.+++.........+..+.+|||+|++.... .. .........+..+
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a   83 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA   83 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            478999999999999999999877654444445554444333444456799999999862111 11 1112233667889


Q ss_pred             ceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCce
Q psy871          145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPI  224 (249)
Q Consensus       145 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (249)
                      |++++|+|+.+..++.+.  ++.++++.   .++|+++|+||+|+....  .+..++. ..                ...
T Consensus        84 d~il~vvD~~~~~~~~d~--~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~~-~l----------------g~~  139 (436)
T 2hjg_A           84 DVIIFMVNGREGVTAADE--EVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFY-SL----------------GFG  139 (436)
T ss_dssp             SEEEEEEETTTCSCHHHH--HHHHHHTT---CCSCEEEEEECCCC-------CCCSSG-GG----------------SSC
T ss_pred             CEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCccch--hhHHHHH-Hc----------------CCC
Confidence            999999999987665442  55555543   689999999999986531  1111111 01                112


Q ss_pred             eEEEeeeccccchHHHHHHHhhhc
Q psy871          225 ELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       225 ~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++++||++|.|++++++++.+.+
T Consensus       140 ~~~~iSA~~g~gv~~L~~~i~~~l  163 (436)
T 2hjg_A          140 EPYPISGTHGLGLGDLLDAVAEHF  163 (436)
T ss_dssp             CCEECBTTTTBTHHHHHHHHHHTG
T ss_pred             CeEEEeCcCCCChHHHHHHHHHhc
Confidence            689999999999999999998765

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=1.3e-18  Score=142.92  Aligned_cols=109  Identities=19%  Similarity=0.175  Sum_probs=51.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++|+++|.||||||||+|+|++....   .+.+|+.+..+...+       .....+..        +.  .  ...|..
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~-------~~~~~~~~--------l~--~--~~~p~~   61 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYA-------ITDHPCKE--------LG--C--SPNPQN   61 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEE-------EEECSCSS--------SC--C--SCCCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEee-------ccCCchHH--------hh--h--hccccc
Confidence            48999999999999999999987632   233455544443210       00000000        00  0  000000


Q ss_pred             ccceeceecccc-ccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCCh
Q psy871           99 HPTRRVWKDYFP-AVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDR  156 (249)
Q Consensus        99 ~~~~~~~~~~~~-~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~  156 (249)
                      .       ..+. .....+.+|||||.....+ .......++.+++.+|++++|+|+++.
T Consensus        62 ~-------~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           62 Y-------EYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             S-------CEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             c-------cccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            0       0011 1124589999999865322 222345667888999999999999875

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.73  E-value=3.6e-17  Score=133.09  Aligned_cols=221  Identities=11%  Similarity=0.040  Sum_probs=107.3

Q ss_pred             HhHHHHhhhcccccc--eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCC-Ccccceeeeeee-eceEEEEcCCC---
Q psy871            4 IWDWFTGVLGYLGLW--TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL-HPILGYLGLWTK-SGKLLFLGLDN---   76 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~--~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~-~~~~~~~~~~~~-~~~~~~~g~~~---   76 (249)
                      +.+.+-+.+..+|..  .+.++|+|+|.+|||||||+|+|++..+......+ ......+.+... .....+...++   
T Consensus        12 ~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~   91 (353)
T 2x2e_A           12 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKF   91 (353)
T ss_dssp             HHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred             HHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCccc
Confidence            455666667677664  46789999999999999999999988764211111 111111111000 00111111111   


Q ss_pred             CchhHHHH-------HHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhh------hhhHHHHhhh-hcccc
Q psy871           77 AGKTTLLH-------MLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF------EESKSELQCL-LTDES  142 (249)
Q Consensus        77 ~Gkssl~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~------~~~~~~~~~~-~~~~~  142 (249)
                      .....+..       ++.+..     .+........ .........+.+|||||....      ....+..... ..++.
T Consensus        92 tt~~~v~~~i~~~~~~i~g~~-----~gi~~~~~~~-~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (353)
T 2x2e_A           92 TDFEEVRLEIEAETDRVTGTN-----KGISPVPINL-RVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT  165 (353)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTT-----TCCCCCCEEE-EEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhcccC-----CCcccCceEE-EEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc
Confidence            11111110       111000     0110000000 011111346999999996431      1111111111 13333


Q ss_pred             c-cceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCC
Q psy871          143 L-ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSG  221 (249)
Q Consensus       143 ~-~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (249)
                      . .+++++|+|++....-......+..+    ...+.|+++|+||+|+.+....  ....++....          ....
T Consensus       166 ~~~~iiL~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~----------~l~~  229 (353)
T 2x2e_A          166 KENCLILAVSPANSDLANSDALKVAKEV----DPQGQRTIGVITKLDLMDEGTD--ARDVLENKLL----------PLRR  229 (353)
T ss_dssp             STTEEEEEEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEEECGGGSCTTCC--CHHHHTTCSS----------CCTT
T ss_pred             CCCeEEEEEecCCCccchhHHHHHHHHh----CcCCCceEEEeccccccCcchh--HHHHHhCCcc----------cccC
Confidence            4 45556677776532222221122222    2367999999999999764221  1122221100          0111


Q ss_pred             CceeEEEeeeccccchHHHHHHHhh
Q psy871          222 RPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       222 ~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ...+++++||++|.|++++++.+.+
T Consensus       230 ~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          230 GYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             CEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             CceEEEeCCcccccccccHHHHHHH
Confidence            2357899999999999999988865

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.73  E-value=8.2e-17  Score=141.15  Aligned_cols=69  Identities=19%  Similarity=0.256  Sum_probs=54.3

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      +..+.+|||||+..|.....      .++..+|++++|+|+++...++... .+.... .   .++|+++++||+|+...
T Consensus        76 ~~~i~liDTPG~~df~~~~~------~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~~~-~---~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           76 DHRINIIDTPGHVDFTIEVE------RSMRVLDGAIVVFDSSQGVEPQSET-VWRQAE-K---YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             TEEEEEECCCSSTTCHHHHH------HHHHHCSEEEEEEETTTCSCHHHHH-HHHHHH-H---TTCCEEEEEECTTSTTC
T ss_pred             CeEEEEEECcCccchHHHHH------HHHHHCCEEEEEEECCCCcchhhHH-HHHHHH-H---cCCCEEEEEECCCcccC
Confidence            56799999999988876665      6678899999999999977666543 233332 2   58999999999999865

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.73  E-value=3.5e-17  Score=130.46  Aligned_cols=127  Identities=20%  Similarity=0.164  Sum_probs=95.7

Q ss_pred             ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC----------ChhhhHhhHHHHHHHHhccCCCCC
Q psy871          109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS----------DRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus       109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                      +...+..+.+||++|++++...+.      .++..++++++|+|++          +..++.+...++..+.......++
T Consensus       162 ~~~~~v~l~iwDtgGQe~~R~~w~------~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~  235 (327)
T 3ohm_A          162 FDLQSVIFRMVDVGGQRSERRKWI------HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS  235 (327)
T ss_dssp             EEETTEEEEEEEECCSHHHHTTGG------GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred             EEeeceeeEEEEcCCchhHHHHHH------HHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence            334456789999999999998888      8889999999999655          567777777788888776666789


Q ss_pred             cEEEEEecCCCCC------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHH
Q psy871          179 PVLILGNKIDKHG------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDG  240 (249)
Q Consensus       179 p~ivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  240 (249)
                      |+++++||+|+..                  ..+.++..+++........       ......+.++++||+++.|++++
T Consensus       236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~-------~~~~~~i~~~~TsA~d~~nV~~v  308 (327)
T 3ohm_A          236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLN-------PDSDKIIYSHFTCATDTENIRFV  308 (327)
T ss_dssp             EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSC-------TTTTSCEEEEECCTTCHHHHHHH
T ss_pred             eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhc-------ccccCCcEEEEEEeecCHHHHHH
Confidence            9999999999854                  2455666665443211100       01124578999999999999999


Q ss_pred             HHHHhhhc
Q psy871          241 FRWLANYI  248 (249)
Q Consensus       241 ~~~l~~~i  248 (249)
                      |..+.+.|
T Consensus       309 F~~v~~~I  316 (327)
T 3ohm_A          309 FAAVKDTI  316 (327)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.73  E-value=7e-18  Score=137.31  Aligned_cols=109  Identities=13%  Similarity=0.103  Sum_probs=70.3

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+..+.++||||......         .....+|++++|+|+...+..+.+..         .....|+++|+||+|+..
T Consensus       170 ~~~~~iiiDTpGi~~~~~---------~~~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl~~  231 (355)
T 3p32_A          170 AGFDVILIETVGVGQSEV---------AVANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADGEH  231 (355)
T ss_dssp             TTCCEEEEEECSCSSHHH---------HHHTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCGGG
T ss_pred             CCCCEEEEeCCCCCcHHH---------HHHHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCCcC
Confidence            456799999999542111         12378999999999887655443321         113469999999999865


Q ss_pred             CCCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          192 AASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       192 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ....+    ++.+.+.....          ....+..+++++||++|.|+++++++|.+.+
T Consensus       232 ~~~~~~~~~~l~~~l~~~~~----------~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~  282 (355)
T 3p32_A          232 HKEARLAARELSAAIRLIYP----------REALWRPPVLTMSAVEGRGLAELWDTVERHR  282 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHST----------TCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhccc----------cccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            31222    22222222210          0011236899999999999999999998764

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.72  E-value=2e-17  Score=133.68  Aligned_cols=129  Identities=12%  Similarity=0.165  Sum_probs=89.2

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC----------ChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS----------DRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                      ....+.+|||+|++++...+.      .++..++++++|+|++          +..++.....++..+.......+.|++
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~------~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~pii  254 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWI------HLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM  254 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTG------GGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEE
T ss_pred             cceeeEEEECCCchhhhHHHH------HHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEE
Confidence            346789999999999998888      8889999999999998          678888888888888765445789999


Q ss_pred             EEEecCCCCCC----C-------------------CHHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEeeeccccch
Q psy871          182 ILGNKIDKHGA----A-------------------SEEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMCSVLMRQGY  237 (249)
Q Consensus       182 vv~nK~Dl~~~----~-------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv  237 (249)
                      +++||+|+..+    .                   ..++..+++.. +.... .... ........+.+++|||+++.|+
T Consensus       255 LvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~-~~~~-~~~~~~~~~~~~eTSA~d~~nV  332 (354)
T 2xtz_A          255 LFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELY-YQNT-APDRVDRVFKIYRTTALDQKLV  332 (354)
T ss_dssp             EEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHH-HHTC-CTTTTTSCEEEEECCTTCHHHH
T ss_pred             EEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhh-hccc-cccccCcceEEEEEEeecchhH
Confidence            99999998431    1                   12334443221 10000 0000 0000012356799999999999


Q ss_pred             HHHHHHHhhhc
Q psy871          238 GDGFRWLANYI  248 (249)
Q Consensus       238 ~~l~~~l~~~i  248 (249)
                      +++|.++.+.|
T Consensus       333 ~~vF~~v~~~I  343 (354)
T 2xtz_A          333 KKTFKLVDETL  343 (354)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.71  E-value=3.9e-17  Score=133.33  Aligned_cols=222  Identities=9%  Similarity=0.014  Sum_probs=109.2

Q ss_pred             HhHHHHhhhcccccc----------eecceEEEeccCCcchHHHHHHHhcCCCCCCCC-CCCcccceeeeeee--e-ceE
Q psy871            4 IWDWFTGVLGYLGLW----------TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP-TLHPILGYLGLWTK--S-GKL   69 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~----------~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~-t~~~~~~~~~~~~~--~-~~~   69 (249)
                      +.+.+.+.+..+|-.          ..-++|+|+|++|||||||+|+|++..+..... +.......+.+...  . ...
T Consensus         7 ~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~   86 (360)
T 3t34_A            7 LVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREY   86 (360)
T ss_dssp             HHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCE
T ss_pred             HHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccce
Confidence            455566666666532          355699999999999999999999987642221 11111111111000  0 011


Q ss_pred             -EEEcCCC---CchhHHHHHHhcCCcccccCCcccceecee-ccccccceEEEEEeCCCchhhhh------h-HHHHhhh
Q psy871           70 -LFLGLDN---AGKTTLLHMLKDDRLAQPVPTLHPTRRVWK-DYFPAVDAIVFLVDTSDRERFEE------S-KSELQCL  137 (249)
Q Consensus        70 -~~~g~~~---~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~D~~g~~~~~~------~-~~~~~~~  137 (249)
                       .+...+.   ..-..+...+..........+......... .........+.+|||||...+..      . .......
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~  166 (360)
T 3t34_A           87 AEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMV  166 (360)
T ss_dssp             EEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHH
T ss_pred             eeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHH
Confidence             1111110   011111111110000000000000001100 11111233589999999776511      1 1112233


Q ss_pred             hccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCC
Q psy871          138 LTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRS  217 (249)
Q Consensus       138 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (249)
                      ..++..+|++++|+|.++.+....   ....++......+.|+++|+||+|+.+....  ..+.++...           
T Consensus       167 ~~~i~~~d~iilvv~~~~~~~~~~---~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~~~~~-----------  230 (360)
T 3t34_A          167 RSYIEKPNCIILAISPANQDLATS---DAIKISREVDPSGDRTFGVLTKIDLMDKGTD--AVEILEGRS-----------  230 (360)
T ss_dssp             HHHHHSSSEEEEEEEETTSCGGGC---HHHHHHHHSCTTCTTEEEEEECGGGCCTTCC--SHHHHTTSS-----------
T ss_pred             HHHhhcCCeEEEEeecccCCcCCH---HHHHHHHHhcccCCCEEEEEeCCccCCCccc--HHHHHcCcc-----------
Confidence            366788999999998866443322   1222333333367899999999999763211  112222111           


Q ss_pred             CCCCCceeEEEeeeccccchHHHHHH
Q psy871          218 EMSGRPIELFMCSVLMRQGYGDGFRW  243 (249)
Q Consensus       218 ~~~~~~~~~~~~Sa~~g~gv~~l~~~  243 (249)
                        .....+|+++|++++.++++.+..
T Consensus       231 --~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          231 --FKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             --SCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             --ccccCCeEEEEECChHHhccCCCH
Confidence              112367999999999888765443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.70  E-value=8.6e-18  Score=136.83  Aligned_cols=115  Identities=11%  Similarity=0.101  Sum_probs=48.8

Q ss_pred             eEEEEEeCCCc-------hhhhhhHHHHh----hhhccc----------cccceEEEEEECCChhhhHhhHHHHHHHHhc
Q psy871          114 AIVFLVDTSDR-------ERFEESKSELQ----CLLTDE----------SLASSIVFLVDTSDRERFEESKSELQCLLTD  172 (249)
Q Consensus       114 ~~~~v~D~~g~-------~~~~~~~~~~~----~~~~~~----------~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~  172 (249)
                      ..+.+|||||+       +.+..+...+.    .++...          .++|+++++++.+ ..++......+...+  
T Consensus        95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l--  171 (361)
T 2qag_A           95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI--  171 (361)
T ss_dssp             EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT--
T ss_pred             cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh--
Confidence            46899999998       44544443111    122111          1234566666652 233444332222222  


Q ss_pred             cCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          173 ESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       173 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                        ..++|+++|+||+|+.................             ....++++++||++|.| ++.+.++.+.
T Consensus       172 --~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~-------------~~~~i~~~~~Sa~~~~~-~e~~~~l~~~  230 (361)
T 2qag_A          172 --HNKVNIVPVIAKADTLTLKERERLKKRILDEI-------------EEHNIKIYHLPDAESDE-DEDFKEQTRL  230 (361)
T ss_dssp             --CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHT-------------TCC-CCSCCCC----------CHHHHHH
T ss_pred             --ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-------------HHCCCCEEeCCCcCCCc-chhHHHHHHH
Confidence              25799999999999976321111111222111             11237899999999998 7666665554

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.70  E-value=1e-16  Score=128.15  Aligned_cols=134  Identities=16%  Similarity=0.088  Sum_probs=95.0

Q ss_pred             ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECC----------ChhhhHhhHHHHHHHHhccCCCCC
Q psy871          109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTS----------DRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus       109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                      +...+..+.+||++|++++...+.      .++..++++++|+|++          +..++.+...++..+.......++
T Consensus       156 ~~~~~v~l~iwDtaGQe~~R~~w~------~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~  229 (340)
T 4fid_A          156 FVVKDIPFHLIDVGGQRSERKXWV------SFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA  229 (340)
T ss_dssp             EESSSCEEEEEECCSCHHHHHHHH------TTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred             EEeeeeeeccccCCCcccccccHH------HHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence            334456789999999999998888      8889999999999998          677888888888888877666789


Q ss_pred             cEEEEEecCCCCCC-----------------CCHHHHHHHhhhcc------cccCcccC----CCCCCCCCceeEEEeee
Q psy871          179 PVLILGNKIDKHGA-----------------ASEEEIRQYFGLYG------LTTGKVAT----PRSEMSGRPIELFMCSV  231 (249)
Q Consensus       179 p~ivv~nK~Dl~~~-----------------~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~Sa  231 (249)
                      |+++++||+|+..+                 ...+++.+++....      ........    .......+.+.++++||
T Consensus       230 piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA  309 (340)
T 4fid_A          230 VKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNA  309 (340)
T ss_dssp             EEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECT
T ss_pred             eEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEe
Confidence            99999999998531                 23444444443211      00000000    00000114588999999


Q ss_pred             ccccchHHHHHHHhhhc
Q psy871          232 LMRQGYGDGFRWLANYI  248 (249)
Q Consensus       232 ~~g~gv~~l~~~l~~~i  248 (249)
                      +++.|++.+|..+.+.|
T Consensus       310 ~dt~nv~~vF~~v~~~I  326 (340)
T 4fid_A          310 TDGSNIKRVFMLAVDVI  326 (340)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             eCcHHHHHHHHHHHHHH
Confidence            99999999999888754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.70  E-value=1.7e-16  Score=139.13  Aligned_cols=69  Identities=19%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      +..+.+|||||+..|.....      ..+..+|++++|+|+++....+... .+..+. .   .++|+++|+||+|+...
T Consensus        74 ~~~i~liDTPG~~df~~~~~------~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~-~---~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           74 GHRVNIIDTPGHVDFTVEVE------RSLRVLDGAVTVLDAQSGVEPQTET-VWRQAT-T---YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             TEEEEEECCCCCSSCCHHHH------HHHHHCSEEEEEEETTTBSCHHHHH-HHHHHH-H---TTCCEEEEEECTTSTTC
T ss_pred             CeeEEEEECcCCcchHHHHH------HHHHHCCEEEEEECCCCCCcHHHHH-HHHHHH-H---cCCCEEEEEECCCcccc
Confidence            56799999999988766555      6677899999999999876665543 333332 2   58999999999999875

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.70  E-value=2.8e-16  Score=137.33  Aligned_cols=68  Identities=16%  Similarity=0.163  Sum_probs=50.7

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ....+.+|||||+..|.....      .++..+|++++|+|+++....+.. .++.... .   .++|+++++||+|+.
T Consensus        72 ~~~~~nliDTpG~~~f~~~~~------~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~-~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           72 RGHRVFLLDAPGYGDFVGEIR------GALEAADAALVAVSAEAGVQVGTE-RAWTVAE-R---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             TTEEEEEEECCCSGGGHHHHH------HHHHHCSEEEEEEETTTCSCHHHH-HHHHHHH-H---TTCCEEEEEECGGGC
T ss_pred             CCEEEEEEeCCCccchHHHHH------HHHhhcCcEEEEEcCCcccchhHH-HHHHHHH-H---ccCCEEEEecCCchh
Confidence            356789999999998876555      667789999999998875443322 2333332 2   579999999999998

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.69  E-value=1.6e-17  Score=134.68  Aligned_cols=109  Identities=12%  Similarity=0.112  Sum_probs=62.2

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+..+.++||+|.....   .      .....+|++++|+|+++....+.+.   ..+      ...|.++|+||+|+.+
T Consensus       165 ~~~~~iliDT~Gi~~~~---~------~l~~~~d~vl~V~d~~~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~  226 (349)
T 2www_A          165 AGYDIILIETVGVGQSE---F------AVADMVDMFVLLLPPAGGDELQGIK---RGI------IEMADLVAVTKSDGDL  226 (349)
T ss_dssp             TTCSEEEEECCCC--CH---H------HHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGG
T ss_pred             CCCCEEEEECCCcchhh---h------hHHhhCCEEEEEEcCCcchhHHHhH---HHH------HhcCCEEEEeeecCCC
Confidence            34568999999964211   1      1236799999999998754332211   111      3568899999999864


Q ss_pred             CCC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          192 AAS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       192 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...    ..++...++...   .       ....+..+++++||++|.|+++++++|.+.+
T Consensus       227 ~~~~~~~~~~l~~~l~~~~---~-------~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          227 IVPARRIQAEYVSALKLLR---K-------RSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcC---c-------cccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            211    111222222111   0       0001135789999999999999999998754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.69  E-value=7.1e-17  Score=135.69  Aligned_cols=160  Identities=21%  Similarity=0.192  Sum_probs=96.2

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhh--hHHHHhhhhcccc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE--SKSELQCLLTDES  142 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~--~~~~~~~~~~~~~  142 (249)
                      ...++.++|.+++|||++++++.+..+....+.++.++..........+..+.+|||||......  ..........++.
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            34689999999999999999999877654444444555444444445566799999999442111  1111122336678


Q ss_pred             ccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCC
Q psy871          143 LASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGR  222 (249)
Q Consensus       143 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (249)
                      .+|++++|+|+.+..+..  ..++.+++..   .++|+++|+||+|+...  ..+..++.. ..                
T Consensus       102 ~ad~il~VvD~~~~~~~~--d~~l~~~l~~---~~~pvilV~NK~D~~~~--~~~~~e~~~-lg----------------  157 (456)
T 4dcu_A          102 EADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEM--RANIYDFYS-LG----------------  157 (456)
T ss_dssp             HCSEEEEEEESSSCSCHH--HHHHHHHHTT---CCSCEEEEEECC-----------CCSGG-GS----------------
T ss_pred             hCCEEEEEEeCCCCCChH--HHHHHHHHHH---cCCCEEEEEECccchhh--hhhHHHHHH-cC----------------
Confidence            899999999987743333  3356666554   68999999999998642  111111111 11                


Q ss_pred             ceeEEEeeeccccchHHHHHHHhhhc
Q psy871          223 PIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       223 ~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ....+++||++|.|++++++.+.+.+
T Consensus       158 ~~~~~~iSA~~g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          158 FGEPYPISGTHGLGLGDLLDAVAEHF  183 (456)
T ss_dssp             SSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred             CCceEEeecccccchHHHHHHHHhhc
Confidence            12467999999999999999998754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.68  E-value=5.4e-16  Score=135.49  Aligned_cols=219  Identities=12%  Similarity=0.061  Sum_probs=115.1

Q ss_pred             HhHHHHhhhcccccc--eecceEEEeccCCcchHHHHHHHhcCCCCCCC---CCCCcccceeeeeeeeceEEEEcCCCCc
Q psy871            4 IWDWFTGVLGYLGLW--TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV---PTLHPILGYLGLWTKSGKLLFLGLDNAG   78 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~--~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~g~~~~G   78 (249)
                      +.+.+-+.+.-+|..  ...++|+|+|.+++|||||+|+|++..+....   .|..+..-.+..  ........ ....|
T Consensus        32 ~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~--~~~~~~~~-l~~~~  108 (772)
T 3zvr_A           32 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN--STTEYAEF-LHCKG  108 (772)
T ss_dssp             HHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEE--CSSCEEEC-STTTT
T ss_pred             HHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeec--CCcchhhe-eccCC
Confidence            455666667777643  67889999999999999999999998763222   222221111110  11111111 11111


Q ss_pred             -----hhHHHHHHhcC--CcccccCCcccceeceecc-ccccceEEEEEeCCCchhh----------hhhHHHHhhhhcc
Q psy871           79 -----KTTLLHMLKDD--RLAQPVPTLHPTRRVWKDY-FPAVDAIVFLVDTSDRERF----------EESKSELQCLLTD  140 (249)
Q Consensus        79 -----kssl~~~l~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~D~~g~~~~----------~~~~~~~~~~~~~  140 (249)
                           ...+...+...  .......+.  ........ .......+.++||||....          .........++. 
T Consensus       109 ~~~~~~~~v~~~I~~~~~~~~g~~~~i--s~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-  185 (772)
T 3zvr_A          109 KKFTDFEEVRLEIEAETDRVTGTNKGI--SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-  185 (772)
T ss_dssp             CCBCCHHHHHHHHHHHHHHHHCSTTCC--CSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-
T ss_pred             cccCCHHHHHHHHHHHHhhhcCCCCcc--cccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-
Confidence                 11111111100  000000011  11111111 1112235889999996541          112222233333 


Q ss_pred             ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCH-HHHHHHhhhcccccCcccCCCCCC
Q psy871          141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASE-EEIRQYFGLYGLTTGKVATPRSEM  219 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  219 (249)
                       ..+|++++|+|+++.....+....+..+ .   ..+.|+++|+||+|+.+.... .++.. -+...            .
T Consensus       186 -~~aDlIL~VVDAs~~~~~~d~l~ll~~L-~---~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~------------l  247 (772)
T 3zvr_A          186 -KENCLILAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE-NKLLP------------L  247 (772)
T ss_dssp             -STTEEEEEEEETTSCSSSCHHHHHHHHH-C---TTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSC------------C
T ss_pred             -cCCcEEEEEEcCCCCcchhHHHHHHHHH-H---hcCCCEEEEEeCcccCCcchhhHHHHH-HHhhh------------h
Confidence             6789999999998854433322233333 2   257999999999999864221 11111 00000            1


Q ss_pred             CCCceeEEEeeeccccchHHHHHHHhh
Q psy871          220 SGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       220 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      .....+++++||++|.|++++++.+.+
T Consensus       248 ~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          248 RRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             SSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             hccCCceEEecccccccchhHHHHHHH
Confidence            123468999999999999999988875

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.68  E-value=2.9e-16  Score=122.62  Aligned_cols=127  Identities=13%  Similarity=0.084  Sum_probs=76.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +++++|+++|++|+|||||+|+|++.......+..+......                                      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~--------------------------------------   75 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV--------------------------------------   75 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCE--------------------------------------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeE--------------------------------------
Confidence            578999999999999999999999876532222111111100                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhc---cccccceEEEEEECCChhhhHhh-HHHHHHHHhccC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLT---DESLASSIVFLVDTSDRERFEES-KSELQCLLTDES  174 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~---~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~  174 (249)
                             ...+...+..+.+|||||++.+....+.....+.   ....+|++++|+|++... +... ..++..+.....
T Consensus        76 -------~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~  147 (262)
T 3def_A           76 -------MVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFG  147 (262)
T ss_dssp             -------EEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHC
T ss_pred             -------EEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhc
Confidence                   0111223457999999999877554432221111   124789999999987654 3322 223433332211


Q ss_pred             C-CCCcEEEEEecCCCCC
Q psy871          175 L-ASCPVLILGNKIDKHG  191 (249)
Q Consensus       175 ~-~~~p~ivv~nK~Dl~~  191 (249)
                      . ...|+++|+||+|+..
T Consensus       148 ~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          148 KEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             GGGGGGEEEEEECTTCCC
T ss_pred             hhhhcCEEEEEeCcccCC
Confidence            1 1259999999999953

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.68  E-value=6.7e-16  Score=135.56  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=52.4

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      ...+.+|||||+..|.....      ..+..+|++++|+|+++....+... .+.... .   .++|+++++||+|+...
T Consensus        81 ~~~i~liDTPG~~df~~~~~------~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~-~---~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           81 PHRINIIDTPGHVDFTIEVE------RSMRVLDGAVMVYCAVGGVQPQSET-VWRQAN-K---YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             ceeEEEEeCCCccchHHHHH------HHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHH-H---cCCCEEEEEeCCCcccc
Confidence            46799999999998876665      5677899999999999865544432 333322 2   57999999999999764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.67  E-value=2.1e-16  Score=123.47  Aligned_cols=133  Identities=16%  Similarity=0.084  Sum_probs=72.4

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA  193 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  193 (249)
                      ..++++||||.............+...+.. +++++++|+.......................+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            469999999987665443322333344456 8889999986543322221111111111111468999999999987532


Q ss_pred             CHHHHHHHhhhcccccCc-------ccC-------CCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          194 SEEEIRQYFGLYGLTTGK-------VAT-------PRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..+++.++++......+.       ...       ..... ....+++++||++|.|+++++++|.+.+
T Consensus       188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHHHHHHHHHHh
Confidence            222233322110000000       000       00000 0124789999999999999999998764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.67  E-value=1.3e-16  Score=121.40  Aligned_cols=103  Identities=14%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      +..+.++||+|+-....       ..  ....+.+++|+|+++.....  . .....      .+.|.++|+||+|+.+.
T Consensus       108 ~~d~iiidt~G~~~~~~-------~~--~~~~~~~i~vvd~~~~~~~~--~-~~~~~------~~~~~iiv~NK~Dl~~~  169 (221)
T 2wsm_A          108 DCDLLLIENVGNLICPV-------DF--DLGENYRVVMVSVTEGDDVV--E-KHPEI------FRVADLIVINKVALAEA  169 (221)
T ss_dssp             TCSEEEEEEEEBSSGGG-------GC--CCSCSEEEEEEEGGGCTTHH--H-HCHHH------HHTCSEEEEECGGGHHH
T ss_pred             CCCEEEEeCCCCCCCCc-------hh--ccccCcEEEEEeCCCcchhh--h-hhhhh------hhcCCEEEEecccCCcc
Confidence            45689999999511110       00  12467889999998753211  1 11111      25799999999998642


Q ss_pred             --CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          193 --ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                        ...+++.+.++...               +..+++++||++|.|+++++++|.+.+
T Consensus       170 ~~~~~~~~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~~l~~~l~~~~  212 (221)
T 2wsm_A          170 VGADVEKMKADAKLIN---------------PRAKIIEMDLKTGKGFEEWIDFLRGIL  212 (221)
T ss_dssp             HTCCHHHHHHHHHHHC---------------TTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhC---------------CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence              35666666665433               237899999999999999999998765

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.66  E-value=8e-16  Score=120.69  Aligned_cols=127  Identities=8%  Similarity=0.004  Sum_probs=76.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .++++|+++|.+|+|||||+|+|++..+....++.+......                                      
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~--------------------------------------   78 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV--------------------------------------   78 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE--------------------------------------
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeE--------------------------------------
Confidence            457899999999999999999999876543222222111111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhh---ccccccceEEEEEECCChhhhHhhH-HHHHHHHhccC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLL---TDESLASSIVFLVDTSDRERFEESK-SELQCLLTDES  174 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~---~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~  174 (249)
                             ...+......+.+|||||++.+..........+   .....+|++++|+|++.. ++.... .++..+.....
T Consensus        79 -------~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~  150 (270)
T 1h65_A           79 -------MVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFG  150 (270)
T ss_dssp             -------EEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHC
T ss_pred             -------EEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhC
Confidence                   011122345699999999877654332111111   123579999999998653 233222 34444432211


Q ss_pred             -CCCCcEEEEEecCCCCC
Q psy871          175 -LASCPVLILGNKIDKHG  191 (249)
Q Consensus       175 -~~~~p~ivv~nK~Dl~~  191 (249)
                       ....|+++|+||+|+..
T Consensus       151 ~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          151 KGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             GGGGGGEEEEEECCSCCC
T ss_pred             cccccCEEEEEECcccCC
Confidence             01269999999999965

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.65  E-value=4.7e-15  Score=119.62  Aligned_cols=101  Identities=19%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchh-HHHHHHhcCCcccccCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKT-TLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gks-sl~~~l~~~~~~~~~~~   97 (249)
                      .+|+++|.||||||||+|+|++..+.   .+.+|+.+..+.+.+              .+.. ..+.....         
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~--------------~~~r~~~l~~~~~---------   59 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM--------------PDPRLDALAEIVK---------   59 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC--------------CCHHHHHHHHHHC---------
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEec--------------CCcccceeeeeec---------
Confidence            58999999999999999999987743   345577766665521              1111 11111110         


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHH-HHhhhhccccccceEEEEEECCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS-ELQCLLTDESLASSIVFLVDTSD  155 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~~~~~~~~~~~~d~ii~v~d~~~  155 (249)
                      +          .......+.+||+||..++.+..+ ....++.+++.+|++++|+|+++
T Consensus        60 ~----------~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           60 P----------ERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             C----------SEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             c----------cceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            0          011234689999999886644322 33456778899999999999986

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.64  E-value=5.3e-16  Score=123.27  Aligned_cols=55  Identities=9%  Similarity=0.073  Sum_probs=32.2

Q ss_pred             CCCcEEEEEecCCCCCCCC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGAAS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...|+++|+||+|+.....    .+++.++++...                 ++++++||+++ |++++|..+.+.+
T Consensus       154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~-~v~e~f~~l~~~i  212 (301)
T 2qnr_A          154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHN-----------------IKIYHLPDAES-DEDEDFKEQTRLL  212 (301)
T ss_dssp             TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTT-----------------CCCCCCC----------CHHHHHHH
T ss_pred             hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC-----------------CeEEecCCccc-cccHHHHHHHHHh
Confidence            4679999999999975311    234444444443                 78999999999 9999998887754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.64  E-value=2e-15  Score=128.85  Aligned_cols=73  Identities=21%  Similarity=0.278  Sum_probs=56.5

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ..+..+.++||||+..|..-..      +.+..+|++|+|+|+...-..+... .++... .   .++|.++++||+|..
T Consensus        97 ~~~~~iNlIDTPGHvDF~~Ev~------raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~-~---~~lp~i~fINK~Dr~  165 (548)
T 3vqt_A           97 YRDRVVNLLDTPGHQDFSEDTY------RVLTAVDSALVVIDAAKGVEAQTRK-LMDVCR-M---RATPVMTFVNKMDRE  165 (548)
T ss_dssp             ETTEEEEEECCCCGGGCSHHHH------HHHHSCSEEEEEEETTTBSCHHHHH-HHHHHH-H---TTCCEEEEEECTTSC
T ss_pred             ECCEEEEEEeCCCcHHHHHHHH------HHHHhcCceEEEeecCCCcccccHH-HHHHHH-H---hCCceEEEEecccch
Confidence            3467899999999999988777      7788999999999999854444432 333332 2   789999999999997


Q ss_pred             CCCC
Q psy871          191 GAAS  194 (249)
Q Consensus       191 ~~~~  194 (249)
                      ....
T Consensus       166 ~ad~  169 (548)
T 3vqt_A          166 ALHP  169 (548)
T ss_dssp             CCCH
T ss_pred             hcch
Confidence            7533

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.64  E-value=3.2e-16  Score=126.81  Aligned_cols=108  Identities=15%  Similarity=0.167  Sum_probs=65.0

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      +..+.++||||.......         ....+|++++|+|++..+.++.+..   ..      .+.|.++|+||+|+...
T Consensus       148 ~~~i~liDTpG~~~~~~~---------~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~  209 (341)
T 2p67_A          148 GYDVVIVETVGVGQSETE---------VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNH  209 (341)
T ss_dssp             TCSEEEEEEECCTTHHHH---------HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCH
T ss_pred             CCCEEEEeCCCccchHHH---------HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCCh
Confidence            456999999997644322         1378999999999987544332211   11      24688999999999753


Q ss_pred             CCHH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          193 ASEE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       193 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ....    ++.+.+.....          ....+..+++++||++|.|+++++++|.+.+
T Consensus       210 ~~~~~~~~~l~~~l~~~~~----------~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~  259 (341)
T 2p67_A          210 TNVAIARHMYESALHILRR----------KYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  259 (341)
T ss_dssp             HHHHHHHHHHHHHHHHSCC----------SBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccc----------cccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence            1121    22222222110          0001135799999999999999999998753

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.61  E-value=8.9e-15  Score=118.67  Aligned_cols=133  Identities=20%  Similarity=0.263  Sum_probs=89.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+|+++|.||||||||+|+|++....   ++.+|+.+..+.+.                                     
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~-------------------------------------  115 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIR-------------------------------------  115 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEE-------------------------------------
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEE-------------------------------------
Confidence            38999999999999999999986643   55666665555541                                     


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhh-HhhHHHHHHHHhccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERF-EESKSELQCLLTDESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~  176 (249)
                                  ..+..+.++|+||...- ........+++..++.+|++++|+|++++..- ..+...+..+  .....
T Consensus       116 ------------~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~  181 (376)
T 4a9a_A          116 ------------YKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGV--GIRLN  181 (376)
T ss_dssp             ------------ETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHT--TEEET
T ss_pred             ------------eCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHh--hHhhc
Confidence                        12346889999996532 22333557788889999999999999987433 3233333332  22335


Q ss_pred             CCcEEEEEecCCCCC----------CCCHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG----------AASEEEIRQYFGLY  205 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~  205 (249)
                      ..|.+++.||+|...          ....+++...+...
T Consensus       182 ~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~  220 (376)
T 4a9a_A          182 KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEY  220 (376)
T ss_dssp             CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHT
T ss_pred             cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHh
Confidence            688999999999742          23455665555443

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.59  E-value=5e-15  Score=119.73  Aligned_cols=125  Identities=16%  Similarity=0.118  Sum_probs=95.6

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC----------hhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD----------RERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                      .+..+.+||++|++++...+.      .++..++++++|+|+++          ..++.....++..+.......+.|++
T Consensus       191 ~~~~l~iwDt~GQe~~r~~w~------~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii  264 (353)
T 1cip_A          191 KDLHFKMFDVGGQRSERKKWI------HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII  264 (353)
T ss_dssp             TTEEEEEEEECCSGGGGGGGG------GGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             CCeeEEEEeCCCchhhhHHHH------HHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence            356789999999999988888      78899999999999999          45688887788888775555789999


Q ss_pred             EEEecCCCCC-----------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871          182 ILGNKIDKHG-----------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL  244 (249)
Q Consensus       182 vv~nK~Dl~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  244 (249)
                      +++||+|+..                 ....++..+++.........      ......+.+++|||+++.|++++|.++
T Consensus       265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~------~~~~~~~~~~etSA~~~~nV~~vF~~v  338 (353)
T 1cip_A          265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNK------RKDTKEIYTHFTCATDTKNVQFVFDAV  338 (353)
T ss_dssp             EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCS------CTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhc------ccCCCceEEEEEECcCchhHHHHHHHH
Confidence            9999999852                 24566776666532100000      001245889999999999999999999


Q ss_pred             hhhc
Q psy871          245 ANYI  248 (249)
Q Consensus       245 ~~~i  248 (249)
                      .+.|
T Consensus       339 ~~~i  342 (353)
T 1cip_A          339 TDVI  342 (353)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.58  E-value=4.5e-15  Score=129.13  Aligned_cols=127  Identities=16%  Similarity=0.147  Sum_probs=83.0

Q ss_pred             ccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC
Q psy871          111 AVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKH  190 (249)
Q Consensus       111 ~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  190 (249)
                      ..+..+.++|||||..|.....      +.+..+|++++|+|+...-..+.. ..+....+    .++|.++++||+|..
T Consensus        64 ~~~~~iNlIDTPGH~DF~~Ev~------raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~----~~lp~i~~INKmDr~  132 (638)
T 3j25_A           64 WENTKVNIIDTPGHMDFLAEVY------RSLSVLDGAILLISAKDGVQAQTR-ILFHALRK----MGIPTIFFINKIDQN  132 (638)
T ss_dssp             CSSCBCCCEECCCSSSTHHHHH------HHHTTCSEEECCEESSCTTCSHHH-HHHHHHHH----HTCSCEECCEECCSS
T ss_pred             ECCEEEEEEECCCcHHHHHHHH------HHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCeEEEEeccccc
Confidence            3456688999999999988777      777899999999999885443332 23333322    589999999999987


Q ss_pred             CCCCHHHHHHHhhhccccc---CcccC----CCCC----------------------------------------CCCCc
Q psy871          191 GAASEEEIRQYFGLYGLTT---GKVAT----PRSE----------------------------------------MSGRP  223 (249)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~----------------------------------------~~~~~  223 (249)
                      ......-+.+..+.+...-   +....    ....                                        ....-
T Consensus       133 ~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (638)
T 3j25_A          133 GIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSL  212 (638)
T ss_dssp             SCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSC
T ss_pred             cCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccc
Confidence            7544443333333221100   00000    0000                                        00122


Q ss_pred             eeEEEeeeccccchHHHHHHHhhhc
Q psy871          224 IELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       224 ~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|++..||+++.|++.+++.+.+++
T Consensus       213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~  237 (638)
T 3j25_A          213 FPLYHGSAKSNIGIDNLIEVITNKF  237 (638)
T ss_dssp             CCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred             ccccccccccCCCchhHhhhhhccc
Confidence            6789999999999999999998754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.57  E-value=9.2e-15  Score=118.65  Aligned_cols=106  Identities=19%  Similarity=0.179  Sum_probs=61.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++|+++|+||||||||+|+|++....   .+.+|+.+..+...            .+..--..+...+          ..
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~------------v~~~~l~~~~~~~----------~~   59 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVP------------LEDERLYALQRTF----------AK   59 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEE------------CCCHHHHHHHHHH----------CB
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEe------------cChHHHHHHHHHh----------cc
Confidence            58999999999999999999986421   23334554444331            0110000111100          00


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhH-HHHhhhhccccccceEEEEEECCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESK-SELQCLLTDESLASSIVFLVDTSD  155 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~-~~~~~~~~~~~~~d~ii~v~d~~~  155 (249)
                      ..    +  .-......+.+||+||.....+.. .....++.+++.+|++++|+|+++
T Consensus        60 ~~----~--~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           60 GE----R--VPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             TT----B--CCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cc----c--ccccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            00    0  000123468999999987653221 223456677899999999999985

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.57  E-value=1.3e-14  Score=110.80  Aligned_cols=102  Identities=13%  Similarity=0.147  Sum_probs=65.0

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA-  192 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-  192 (249)
                      ..++++|++|.-....         ..-...+..+.++|+.........   ....      .+.|.++|+||+|+.+. 
T Consensus       119 ~d~~~id~~g~i~~~~---------s~~~~~~~~~~v~~~~~~~~~~~~---~~~~------~~~~~iiv~NK~Dl~~~~  180 (226)
T 2hf9_A          119 IDLLFIENVGNLICPA---------DFDLGTHKRIVVISTTEGDDTIEK---HPGI------MKTADLIVINKIDLADAV  180 (226)
T ss_dssp             CSEEEEECCSCSSGGG---------GCCCSCSEEEEEEEGGGCTTTTTT---CHHH------HTTCSEEEEECGGGHHHH
T ss_pred             CCEEEEeCCCCccCcc---------hhhhccCcEEEEEecCcchhhHhh---hhhH------hhcCCEEEEeccccCchh
Confidence            3588899988421111         111234556778886432211110   0111      24789999999998652 


Q ss_pred             -CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          193 -ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                       ...+++.+.++...               ...+++++||++|.|+++++++|.+.+
T Consensus       181 ~~~~~~~~~~~~~~~---------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~  222 (226)
T 2hf9_A          181 GADIKKMENDAKRIN---------------PDAEVVLLSLKTMEGFDKVLEFIEKSV  222 (226)
T ss_dssp             TCCHHHHHHHHHHHC---------------TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC---------------CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence             35666666666432               236899999999999999999998765

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.55  E-value=9.9e-15  Score=124.78  Aligned_cols=74  Identities=16%  Similarity=0.049  Sum_probs=46.7

Q ss_pred             EEEEEeCCCchhhhh--hHH---HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          115 IVFLVDTSDRERFEE--SKS---ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       115 ~~~v~D~~g~~~~~~--~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      .+.+|||||...-..  ..+   .......++..+|++++|+|+++.........++..+ .   ..+.|+++|+||+|+
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~pvilVlNK~Dl  230 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-R---GHEDKIRVVLNKADM  230 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-T---TCGGGEEEEEECGGG
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-H---hcCCCEEEEEECCCc
Confidence            478999999764111  000   0111224567899999999998854444333344333 2   256899999999999


Q ss_pred             CCC
Q psy871          190 HGA  192 (249)
Q Consensus       190 ~~~  192 (249)
                      ...
T Consensus       231 ~~~  233 (550)
T 2qpt_A          231 VET  233 (550)
T ss_dssp             SCH
T ss_pred             cCH
Confidence            863

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.54  E-value=3.3e-15  Score=120.41  Aligned_cols=109  Identities=16%  Similarity=0.114  Sum_probs=62.4

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+..++++||+|...-...         ....+|.+++|+|+...+..+.+...+         ...|.++++||+|+..
T Consensus       146 ~~~~~iliDT~Gi~~~~~~---------v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvlNK~Dl~~  207 (337)
T 2qm8_A          146 AGFDVILVETVGVGQSETA---------VADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAVNKADDGD  207 (337)
T ss_dssp             TTCCEEEEEECSSSSCHHH---------HHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEEECCSTTC
T ss_pred             CCCCEEEEECCCCCcchhh---------HHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEEEchhccC
Confidence            4567999999996532211         126799999999987543222111111         1246688889999754


Q ss_pred             CCC-----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          192 AAS-----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       192 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...     .+++...+.....          ....+..+++++||+++.|++++++.|.+..
T Consensus       208 ~~~~s~~~~~~l~~a~~l~~~----------~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          208 GERRASAAASEYRAALHILTP----------PSATWTPPVVTISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             CHHHHHHHHHHHHHHHTTBCC----------SBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccc----------cccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            211     1122222211110          0000125789999999999999999987653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.54  E-value=2.7e-14  Score=105.00  Aligned_cols=106  Identities=11%  Similarity=0.162  Sum_probs=80.5

Q ss_pred             CchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHH---HHHHhccC-CCCCcEEEEEecC-CCCCCCCHHH
Q psy871          123 DRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSEL---QCLLTDES-LASCPVLILGNKI-DKHGAASEEE  197 (249)
Q Consensus       123 g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~  197 (249)
                      |++.+...++      .|+..+|++|+|+|+++..... ...++   ..++.+.. ..+.|++|++||. |+....+..+
T Consensus       111 GQ~klRplWr------~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~E  183 (227)
T 3l82_B          111 SRYSVIPQIQ------KVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFY  183 (227)
T ss_dssp             ------CCHH------HHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHH
T ss_pred             cHHHHHHHHH------HHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHH
Confidence            6778888888      8889999999999999876554 44455   44444432 4689999999995 8888889999


Q ss_pred             HHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          198 IRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +.+.+....            . .+.+.+++|||++|+|+.+.++||.+.+
T Consensus       184 I~e~L~L~~------------l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          184 LAHELHLNL------------L-NHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             HHHHTTGGG------------G-CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             HHHHcCCcC------------C-CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence            998887654            2 2569999999999999999999999875

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.54  E-value=3.4e-14  Score=125.22  Aligned_cols=70  Identities=16%  Similarity=0.154  Sum_probs=54.3

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+..+.++|||||-.|..-..      +.+..+|++++|+|+...-..+... .++...+    .++|.++++||+|...
T Consensus        83 ~~~~iNlIDTPGHvDF~~Ev~------~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~----~~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           83 DNYRVNVIDTPGHVDFTIEVE------RSLRVLDGAVVVFCGTSGVEPQSET-VWRQANK----YGVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCEEEEEECCCSCTTCHHHHH------HHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----HTCCEEEEEECSSSTT
T ss_pred             CCEEEEEEeCCCCcccHHHHH------HHHHHhCeEEEEEECCCCCchhHHH-HHHHHHH----cCCCeEEEEccccccC
Confidence            357899999999999988777      7778999999999998854433322 3333333    5899999999999876


Q ss_pred             C
Q psy871          192 A  192 (249)
Q Consensus       192 ~  192 (249)
                      .
T Consensus       152 a  152 (709)
T 4fn5_A          152 A  152 (709)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.53  E-value=3.7e-14  Score=116.93  Aligned_cols=55  Identities=9%  Similarity=0.016  Sum_probs=25.2

Q ss_pred             CCCcEEEEEecCCCCCCCCH----HHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          176 ASCPVLILGNKIDKHGAASE----EEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      .+.|+|+|+||+|+......    +++.+.+...+                 ++++++||+++.++++++..+.+.
T Consensus       166 ~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~-----------------i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          166 EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK-----------------IKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHT-----------------CCCCCCC-----------------
T ss_pred             ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcC-----------------CeEEeCCCCCCcCHHHHHHHHHhh
Confidence            47999999999999752111    23333344333                 788999999999999888777654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.52  E-value=2e-14  Score=128.62  Aligned_cols=69  Identities=16%  Similarity=0.214  Sum_probs=54.4

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+..+.+|||||+.+|.....      .++..+|++++|+|+++..+++... .+.....    .++|+++++||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~------~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~----~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVT------AALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHH------HHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHH------HHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCeEEEEECCCcch
Confidence            356799999999999877666      6678899999999999987776643 2333322    5799999999999863

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.52  E-value=3.3e-14  Score=115.33  Aligned_cols=125  Identities=15%  Similarity=0.199  Sum_probs=87.5

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC----------hhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD----------RERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                      .+..+.+||++|++++...+.      .++..++++++|+|+++          ..++.....++..+.......+.|++
T Consensus       199 ~~~~l~i~Dt~Gq~~~r~~w~------~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI  272 (362)
T 1zcb_A          199 KNVPFKMVDVGGQRSERKRWF------ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII  272 (362)
T ss_dssp             TTEEEEEEEECC-------CT------TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             CCeEEEEEeccchhhhhhhHH------HHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence            356789999999998887777      77889999999999999          67888888888888766555789999


Q ss_pred             EEEecCCCCC------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871          182 ILGNKIDKHG------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW  243 (249)
Q Consensus       182 vv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  243 (249)
                      +++||+|+..                  ....++..+++........      .......+.+++|||+++.|++++|.+
T Consensus       273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~------~~~~~~~~~~~~tSA~d~~nV~~vF~~  346 (362)
T 1zcb_A          273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKR------RDQQQRPLYHHFTTAINTENIRLVFRD  346 (362)
T ss_dssp             EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTC------SSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred             EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhh------cccCCCceEEEEEecCCchhHHHHHHH
Confidence            9999999852                  1456666665521110000      000023478999999999999999999


Q ss_pred             Hhhhc
Q psy871          244 LANYI  248 (249)
Q Consensus       244 l~~~i  248 (249)
                      +.+.|
T Consensus       347 v~~~i  351 (362)
T 1zcb_A          347 VKDTI  351 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.47  E-value=6.5e-14  Score=111.33  Aligned_cols=105  Identities=12%  Similarity=0.077  Sum_probs=81.8

Q ss_pred             EEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCC
Q psy871          115 IVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGAA  193 (249)
Q Consensus       115 ~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  193 (249)
                      .+.+||+  ++++..+.+      .+++.+|++++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.+..
T Consensus        64 ~~~iwD~--qer~~~l~~------~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~  131 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTK------PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDED  131 (301)
T ss_dssp             SEEEEEE--CCCSCEETT------TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHH
T ss_pred             eEEEEEE--ccccceeec------cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCch
Confidence            6889999  788888888      7889999999999999987 67767777765532    579999999999997532


Q ss_pred             CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          194 SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                      ..++..++++...              .. .++++|||++|.|+++++.++..
T Consensus       132 ~v~~~~~~~~~~~--------------~~-~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          132 DLRKVRELEEIYS--------------GL-YPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHHHHHT--------------TT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred             hHHHHHHHHHHHh--------------hh-CcEEEEECCCCcCHHHHHHHhcC
Confidence            2233445554433              11 67999999999999999998764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.46  E-value=1.1e-13  Score=113.05  Aligned_cols=125  Identities=12%  Similarity=0.100  Sum_probs=90.3

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC----------hhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD----------RERFEESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                      +..+.+||++|++++...+.      .++..++++++|+|+++          ..++.....++..+.......++|+++
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~------~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiL  289 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWI------QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVIL  289 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGG------GGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEE
T ss_pred             CccceecccchhhhhhhhhH------hhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEE
Confidence            46789999999999998888      78899999999999999          888998888888887665557899999


Q ss_pred             EEecCCCCCC-----C---------------------------CHHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEe
Q psy871          183 LGNKIDKHGA-----A---------------------------SEEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMC  229 (249)
Q Consensus       183 v~nK~Dl~~~-----~---------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  229 (249)
                      ++||+|+..+     .                           ..++...++.. +.... .    ........+.+++|
T Consensus       290 vgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~-~----~~~~~~~~~~~~~T  364 (402)
T 1azs_C          290 FLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRIS-T----ASGDGRHYCYPHFT  364 (402)
T ss_dssp             EEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHH-H----TSCTTSSCEEEEEC
T ss_pred             EEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhh-c----cccccCcccEEEEE
Confidence            9999998431     0                           01223333211 00000 0    00001123678999


Q ss_pred             eeccccchHHHHHHHhhhc
Q psy871          230 SVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       230 Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ||+++.|++++|.++.+.|
T Consensus       365 SA~d~~nV~~vF~~v~~~I  383 (402)
T 1azs_C          365 CAVDTENIRRVFNDCRDII  383 (402)
T ss_dssp             CTTCHHHHHHHHHHHHHHH
T ss_pred             EeecCcCHHHHHHHHHHHH
Confidence            9999999999999987654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.41  E-value=4.8e-13  Score=103.17  Aligned_cols=107  Identities=11%  Similarity=0.175  Sum_probs=83.9

Q ss_pred             CCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHH---HHHhcc-CCCCCcEEEEEec-CCCCCCCCHH
Q psy871          122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQ---CLLTDE-SLASCPVLILGNK-IDKHGAASEE  196 (249)
Q Consensus       122 ~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~---~~~~~~-~~~~~p~ivv~nK-~Dl~~~~~~~  196 (249)
                      .|++.+...++      .|+..+|++|+|+|+++.+.+. ...++.   .++.+. ...+.|++|++|| .|+....+..
T Consensus       195 GGQ~~lRplWr------~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~  267 (312)
T 3l2o_B          195 GSRYSVIPQIQ------KVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCF  267 (312)
T ss_dssp             --CCCCCHHHH------HHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHH
T ss_pred             CCHHHHHHHHH------HHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHH
Confidence            46778888888      8889999999999999987654 333333   444332 2478999999996 6998888999


Q ss_pred             HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          197 EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++.+.+....            . .+.+.+++|||++|+|+.+.++||.+.+
T Consensus       268 EI~e~L~L~~------------l-~r~W~Iq~csA~tGeGL~EGldWL~~~l  306 (312)
T 3l2o_B          268 YLAHELHLNL------------L-NHPWLVQDTEAETLTGFLNGIEWILEEV  306 (312)
T ss_dssp             HHHHHTTGGG------------G-CSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred             HHHHHcCCcc------------C-CCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence            9988887654            2 2569999999999999999999999875

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.27  E-value=1e-10  Score=95.57  Aligned_cols=47  Identities=23%  Similarity=0.309  Sum_probs=36.9

Q ss_pred             ccccceecceEEEeccCCcchHHHHHHHhcCCCC----CCCCCCCccccee
Q psy871           14 YLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPILGYL   60 (249)
Q Consensus        14 ~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~----~~~~t~~~~~~~~   60 (249)
                      .+|-..+..+++++|++|||||||+|+|++..+.    .+..|+.+..+.+
T Consensus        13 ~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v   63 (392)
T 1ni3_A           13 QWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV   63 (392)
T ss_dssp             CCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEE
T ss_pred             HhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeee
Confidence            4566667789999999999999999999996652    4445677776666

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.26  E-value=4.5e-12  Score=103.31  Aligned_cols=111  Identities=19%  Similarity=0.247  Sum_probs=59.3

Q ss_pred             cccccceecceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchh-HHHHHHhc
Q psy871           13 GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKT-TLLHMLKD   88 (249)
Q Consensus        13 ~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gks-sl~~~l~~   88 (249)
                      .++|...+..+|+++|+||||||||+|+|++..+.   .+.+|+.+..+.+.+              .+.. ..+.....
T Consensus        14 ~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v--------------~~~r~~~l~~~~~   79 (396)
T 2ohf_A           14 PIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV--------------PDERFDFLCQYHK   79 (396)
T ss_dssp             --CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC--------------CCHHHHHHHHHHC
T ss_pred             HHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE--------------CCccceeeccccC
Confidence            35667778899999999999999999999987653   344566655555421              1111 01111000


Q ss_pred             CCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHH-HHhhhhccccccceEEEEEECCCh
Q psy871           89 DRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKS-ELQCLLTDESLASSIVFLVDTSDR  156 (249)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~-~~~~~~~~~~~~d~ii~v~d~~~~  156 (249)
                                         ........+.+||+||.....+..+ ....++.+++.+|++++|+|+++.
T Consensus        80 -------------------p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A           80 -------------------PASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------------------CSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             -------------------cccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence                               0011234689999999876544322 233567888999999999999764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.20  E-value=1.6e-11  Score=97.51  Aligned_cols=97  Identities=14%  Similarity=0.079  Sum_probs=71.8

Q ss_pred             chhhhhhHHHHhhhhccccccceEEEEEECCChh-hhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCC---HHHHH
Q psy871          124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRE-RFEESKSELQCLLTDESLASCPVLILGNKIDKHGAAS---EEEIR  199 (249)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~  199 (249)
                      ++++..+.+      .++..+|++++|+|++++. ++..+..++..+..    .++|+++|+||+|+.++..   .+++.
T Consensus        66 ~er~~~l~r------~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~  135 (302)
T 2yv5_A           66 EERKNLLIR------PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWI  135 (302)
T ss_dssp             CCCSCEEET------TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             CChHHHHhH------HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHH
Confidence            445555555      5789999999999999886 77767767765432    6899999999999976321   23333


Q ss_pred             HHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          200 QYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +.++..+                 .+++++||++|.|++++++.+...
T Consensus       136 ~~~~~~g-----------------~~~~~~SA~~g~gi~~L~~~l~G~  166 (302)
T 2yv5_A          136 SIYRDAG-----------------YDVLKVSAKTGEGIDELVDYLEGF  166 (302)
T ss_dssp             HHHHHTT-----------------CEEEECCTTTCTTHHHHHHHTTTC
T ss_pred             HHHHHCC-----------------CeEEEEECCCCCCHHHHHhhccCc
Confidence            3343333                 689999999999999999987643

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.12  E-value=1.7e-10  Score=97.09  Aligned_cols=120  Identities=18%  Similarity=0.188  Sum_probs=65.7

Q ss_pred             ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE-EEEEecCCCC
Q psy871          113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV-LILGNKIDKH  190 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~  190 (249)
                      +..++++||||..... .....+..... ...+|.+++|+|+.......   .....+ ..    .+|+ .+|+||+|..
T Consensus       183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~-~i~pd~vllVvDa~~g~~~~---~~a~~~-~~----~~~i~gvVlNK~D~~  253 (504)
T 2j37_W          183 NFEIIIVDTSGRHKQEDSLFEEMLQVAN-AIQPDNIVYVMDASIGQACE---AQAKAF-KD----KVDVASVIVTKLDGH  253 (504)
T ss_dssp             TCCEEEEEECCCCTTCHHHHHHHHHHHH-HHCCSEEEEEEETTCCTTHH---HHHHHH-HH----HHCCCCEEEECTTSC
T ss_pred             CCcEEEEeCCCCcccchhHHHHHHHHHh-hhcCceEEEEEeccccccHH---HHHHHH-Hh----hcCceEEEEeCCccc
Confidence            4568999999965422 22222222222 23789999999998753211   122222 11    2675 8999999987


Q ss_pred             CCCCHHHHHHHhhhccccc-----CcccCCCCCCCCCceeEEEeeeccccc-hHHHHHHHhhh
Q psy871          191 GAASEEEIRQYFGLYGLTT-----GKVATPRSEMSGRPIELFMCSVLMRQG-YGDGFRWLANY  247 (249)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~  247 (249)
                      .....  ...........-     ....   ... ....+.+++|+..|.| ++++++++.+.
T Consensus       254 ~~~g~--~l~~~~~~g~PI~fig~ge~~---~dl-~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          254 AKGGG--ALSAVAATKSPIIFIGTGEHI---DDF-EPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCTH--HHHHHHHHCCCEEEEECSSST---TCE-ECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cchHH--HHHHHHHhCCCeEEeccccch---hhh-hccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            53221  111222111000     0000   000 0123456789999999 99999998754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.99  E-value=1.7e-11  Score=99.94  Aligned_cols=80  Identities=10%  Similarity=-0.108  Sum_probs=45.0

Q ss_pred             EEEEeCCCchhhhhhHH-HHhhhhccc---cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          116 VFLVDTSDRERFEESKS-ELQCLLTDE---SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       116 ~~v~D~~g~~~~~~~~~-~~~~~~~~~---~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      +.++||||......... .....+..+   ...+.+++++++.....+..+..     +......+.|+++++||+|...
T Consensus       214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~  288 (369)
T 3ec1_A          214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVH  288 (369)
T ss_dssp             CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEE
T ss_pred             eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccc
Confidence            78999999654332211 112222333   77899999999854322211110     1111125689999999999876


Q ss_pred             CCCHHHHHH
Q psy871          192 AASEEEIRQ  200 (249)
Q Consensus       192 ~~~~~~~~~  200 (249)
                      ....+...+
T Consensus       289 ~~~~~~~~~  297 (369)
T 3ec1_A          289 RTKLEKADS  297 (369)
T ss_dssp             EEEGGGHHH
T ss_pred             cccHHHHHH
Confidence            333333333

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.98  E-value=3.8e-09  Score=87.31  Aligned_cols=98  Identities=12%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      +..++++||+|..... .....+... .....+|.+++|+|+.......   .....+..    .-.+..+|+||+|...
T Consensus       182 ~~DvVIIDTaGrl~~d~~lm~el~~i-~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~----~~~i~gVIlTKlD~~~  253 (443)
T 3dm5_A          182 GVDIIIVDTAGRHKEDKALIEEMKQI-SNVIHPHEVILVIDGTIGQQAY---NQALAFKE----ATPIGSIIVTKLDGSA  253 (443)
T ss_dssp             TCSEEEEECCCCSSCCHHHHHHHHHH-HHHHCCSEEEEEEEGGGGGGHH---HHHHHHHH----SCTTEEEEEECCSSCS
T ss_pred             CCCEEEEECCCcccchHHHHHHHHHH-HHhhcCceEEEEEeCCCchhHH---HHHHHHHh----hCCCeEEEEECCCCcc
Confidence            3568899999954322 122222222 2234579999999998743322   23333322    2345679999999864


Q ss_pred             CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          192 AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      .  ...+........                 .|+.+++.  |+++++
T Consensus       254 ~--gG~~ls~~~~~g-----------------~PI~fig~--Ge~vdd  280 (443)
T 3dm5_A          254 K--GGGALSAVAATG-----------------APIKFIGT--GEKIDD  280 (443)
T ss_dssp             S--HHHHHHHHHTTC-----------------CCEEEEEC--SSSTTC
T ss_pred             c--ccHHHHHHHHHC-----------------CCEEEEEc--CCChHH
Confidence            2  233444343333                 56666664  776654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.97  E-value=2.1e-11  Score=99.38  Aligned_cols=84  Identities=12%  Similarity=-0.010  Sum_probs=48.0

Q ss_pred             EEEEeCCCchhhhhhHH----HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          116 VFLVDTSDRERFEESKS----ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       116 ~~v~D~~g~~~~~~~~~----~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      +.++||||.........    .....+......+.++++++.........+. .    +......+.|+++++||+|...
T Consensus       213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~-~----~d~l~~~~~~~~~v~nk~d~~~  287 (368)
T 3h2y_A          213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLA-R----FDYVSGGRRAFTCHFSNRLTIH  287 (368)
T ss_dssp             CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTE-E----EEEEESSSEEEEEEECTTSCEE
T ss_pred             eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceE-E----EEEecCCCceEEEEecCccccc
Confidence            78999999654332211    1111222246788999999885432222111 0    1111125689999999999987


Q ss_pred             CCCHHHHHHHhhh
Q psy871          192 AASEEEIRQYFGL  204 (249)
Q Consensus       192 ~~~~~~~~~~~~~  204 (249)
                      ....+...+.++.
T Consensus       288 ~~~~~~~~~~~~~  300 (368)
T 3h2y_A          288 RTKLEKADELYKN  300 (368)
T ss_dssp             EEEHHHHHHHHHH
T ss_pred             cccHHHHHHHHHH
Confidence            5555555555444

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.97  E-value=1.1e-08  Score=84.09  Aligned_cols=117  Identities=11%  Similarity=0.066  Sum_probs=62.9

Q ss_pred             EEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCC--hhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCC-
Q psy871          115 IVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSD--RERFEESKSELQCLLTDESLASCPVLILGNKIDKH-  190 (249)
Q Consensus       115 ~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-  190 (249)
                      .+.++|++|...... ..+.+..+  .+...+..+. ++...  ....     .+...+..   .+.|+++|.||.|+. 
T Consensus       121 ~ltv~D~~g~~~~~~~~~~~L~~~--~L~~~~~~~~-lS~G~~~kqrv-----~la~aL~~---~~~p~~lV~tkpdlll  189 (413)
T 1tq4_A          121 NVVFWDLPGIGSTNFPPDTYLEKM--KFYEYDFFII-ISATRFKKNDI-----DIAKAISM---MKKEFYFVRTKVDSDI  189 (413)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHT--TGGGCSEEEE-EESSCCCHHHH-----HHHHHHHH---TTCEEEEEECCHHHHH
T ss_pred             CeeehHhhcccchHHHHHHHHHHc--CCCccCCeEE-eCCCCccHHHH-----HHHHHHHh---cCCCeEEEEecCcccc
Confidence            367889988542111 11111111  1223344444 77763  2211     22222222   578999999999974 


Q ss_pred             --------CCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeee--ccccchHHHHHHHhhhc
Q psy871          191 --------GAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSV--LMRQGYGDGFRWLANYI  248 (249)
Q Consensus       191 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~g~gv~~l~~~l~~~i  248 (249)
                              +...++++.+.++......-      .+.......++.+|+  ..+.|++++.+.+.+.+
T Consensus       190 LDEPtsgLD~~~~~~l~~~l~~l~~~~l------~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          190 TNEADGEPQTFDKEKVLQDIRLNCVNTF------RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHHHHHHHHH------HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             cCcccccCCHHHHHHHHHHHHHHHHHHH------HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence                    23456666665555420000      000011246899999  67778999999998765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.94  E-value=1.9e-09  Score=88.64  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=21.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      ++++|+|++|||||||+|.|++..
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCcc
Confidence            349999999999999999998763

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.94  E-value=1.9e-09  Score=84.05  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=22.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +++++|+|++|||||||+|.|++..
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999998743

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.90  E-value=4.3e-09  Score=87.30  Aligned_cols=123  Identities=12%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             ceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC-c-EEEEEecCCC
Q psy871          113 DAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC-P-VLILGNKIDK  189 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl  189 (249)
                      +..++++||||...... ....+.. +.....+|.+++|+|+....   +.......+ .    ... | ..+|+||+|.
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~-i~~~~~~d~vllVvda~~g~---~~~~~~~~~-~----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQ-IKEITNPDEIILVIDGTIGQ---QAGIQAKAF-K----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHH-TTSSSCCSEEEEEEEGGGGG---GHHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHH-HHHHhcCcceeEEeeccccH---HHHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence            44589999999654321 2222222 23344689999999997653   222222222 1    235 5 8899999998


Q ss_pred             CCCCCHHHHHHHhhhcccccCcccCCCCCC--CCCceeEEEeeeccccc-hHHHHHHHhhh
Q psy871          190 HGAASEEEIRQYFGLYGLTTGKVATPRSEM--SGRPIELFMCSVLMRQG-YGDGFRWLANY  247 (249)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~  247 (249)
                      ...  ...+..........--+. ......  -....+...+|+..|.| +..+++.+.+.
T Consensus       251 ~~~--~g~~l~~~~~~~~pi~~i-g~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~  308 (432)
T 2v3c_C          251 SAK--GGGALSAVAETKAPIKFI-GIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDM  308 (432)
T ss_dssp             CST--THHHHHHHHHSSCCEEEE-CCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred             ccc--hHHHHHHHHHHCCCEEEe-ecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            542  122323333222110000 000000  01223456788999988 77776665543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.88  E-value=2.9e-09  Score=83.61  Aligned_cols=99  Identities=18%  Similarity=0.115  Sum_probs=66.6

Q ss_pred             eCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHH
Q psy871          120 DTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIR  199 (249)
Q Consensus       120 D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  199 (249)
                      ..|||.     .....++...+..+|+++.|+|+.++.+....  .+.+++     .++|.++|+||+|+.+....+.+.
T Consensus         5 w~PGhm-----~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~   72 (282)
T 1puj_A            5 WFPGHM-----AKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWK   72 (282)
T ss_dssp             ----CT-----THHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHH
T ss_pred             CCchHH-----HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHH
Confidence            456764     12234555778899999999999998776532  344442     579999999999998632222333


Q ss_pred             HHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          200 QYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ++++..+                 .+++++||+++.|++++++.+.+.
T Consensus        73 ~~~~~~g-----------------~~~i~iSA~~~~gi~~L~~~i~~~  103 (282)
T 1puj_A           73 EHFENQG-----------------IRSLSINSVNGQGLNQIVPASKEI  103 (282)
T ss_dssp             HHHHTTT-----------------CCEEECCTTTCTTGGGHHHHHHHH
T ss_pred             HHHHhcC-----------------CcEEEEECCCcccHHHHHHHHHHH
Confidence            3333222                 579999999999999999887654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.83  E-value=1.1e-08  Score=84.50  Aligned_cols=174  Identities=14%  Similarity=0.074  Sum_probs=86.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhcC-Cccccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKDD-RLAQPV   95 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~~-~~~~~~   95 (249)
                      .++..|+++|++||||||++..|...-..                 ...++.++..+.-.....  +..+... ..+...
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~-----------------~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~  157 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKK-----------------RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG  157 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHH-----------------TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH-----------------cCCeEEEEecCccchhHHHHHHHHHHhcCCceee
Confidence            34678999999999999999999742110                 122333433333222211  1111111 010000


Q ss_pred             C-Ccccceece---eccccccceEEEEEeCCCchh---hhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHH
Q psy871           96 P-TLHPTRRVW---KDYFPAVDAIVFLVDTSDRER---FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC  168 (249)
Q Consensus        96 ~-~~~~~~~~~---~~~~~~~~~~~~v~D~~g~~~---~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~  168 (249)
                      . .........   -......+..++++||+|...   -......+...... ...+.+++|+|+........   ....
T Consensus       158 ~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~-~~pd~vlLVlDa~~gq~a~~---~a~~  233 (433)
T 3kl4_A          158 EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV-LKPDDVILVIDASIGQKAYD---LASR  233 (433)
T ss_dssp             CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH-HCCSEEEEEEEGGGGGGGHH---HHHH
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh-hCCcceEEEEeCccchHHHH---HHHH
Confidence            0 000000000   011122345688999999533   11222222222222 24689999999987533222   3333


Q ss_pred             HHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871          169 LLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG  238 (249)
Q Consensus       169 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  238 (249)
                      +..    .-.+..+|+||+|...  ....+........                 .|+..++.  |++++
T Consensus       234 f~~----~~~~~gVIlTKlD~~a--~~G~als~~~~~g-----------------~Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          234 FHQ----ASPIGSVIITKMDGTA--KGGGALSAVVATG-----------------ATIKFIGT--GEKID  278 (433)
T ss_dssp             HHH----HCSSEEEEEECGGGCS--CHHHHHHHHHHHT-----------------CEEEEEEC--CSSSS
T ss_pred             Hhc----ccCCcEEEEecccccc--cchHHHHHHHHHC-----------------CCEEEEEC--CCChH
Confidence            322    1246789999999763  2334444444444                 66666664  66653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.81  E-value=1.3e-08  Score=82.98  Aligned_cols=101  Identities=18%  Similarity=0.238  Sum_probs=65.7

Q ss_pred             chhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-CCHHHHHHHh
Q psy871          124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA-ASEEEIRQYF  202 (249)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~  202 (249)
                      .++|.+..+      ..++.++++++|+|++++..  .....+.++.     .++|+++|+||+|+... ...+++.+++
T Consensus        56 ~e~f~~~l~------~i~~~~~~il~VvD~~d~~~--~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l  122 (368)
T 3h2y_A           56 DDDFLRILN------GIGKSDALVVKIVDIFDFNG--SWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWM  122 (368)
T ss_dssp             CHHHHHHHH------HHHHSCCEEEEEEETTSHHH--HCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHH
T ss_pred             HHHHHHHHH------HHhccCcEEEEEEECCCCcc--cHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHH
Confidence            456666555      44567789999999998642  2112333331     47899999999999763 3344555543


Q ss_pred             hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          203 GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +.....          ...+..+++++||++|.|++++++.+.+.
T Consensus       123 ~~~~~~----------~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          123 RYSAKQ----------LGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HHHHHH----------TTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHH----------cCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            322100          11112379999999999999999998653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.73  E-value=2.5e-08  Score=81.31  Aligned_cols=101  Identities=17%  Similarity=0.190  Sum_probs=66.9

Q ss_pred             chhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC-CCHHHHHHHh
Q psy871          124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA-ASEEEIRQYF  202 (249)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~  202 (249)
                      +++|.+...      ..+..++++++|+|++++.+-  ....+.+++     .+.|+++|+||+|+... ...+.+.+++
T Consensus        58 ~e~f~~~L~------~~~~~~~lil~VvD~~d~~~s--~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l  124 (369)
T 3ec1_A           58 DDDFLSMLH------RIGESKALVVNIVDIFDFNGS--FIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWM  124 (369)
T ss_dssp             -CHHHHHHH------HHHHHCCEEEEEEETTCSGGG--CCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHH
T ss_pred             HHHHHHHHH------HhhccCcEEEEEEECCCCCCc--hhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHH
Confidence            556666555      445788999999999997632  111333332     47899999999999764 3345555554


Q ss_pred             hhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          203 GLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      +.....          ...+..+++++||++|.|++++++.+.+.
T Consensus       125 ~~~~~~----------~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          125 RRMAEE----------LGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             HHHHHT----------TTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHH----------cCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence            332100          11122478999999999999999998754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.71  E-value=1e-07  Score=75.29  Aligned_cols=172  Identities=16%  Similarity=0.131  Sum_probs=85.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhcC-CcccccC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKDD-RLAQPVP   96 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~~-~~~~~~~   96 (249)
                      +...++++|++|+||||++..|......                 ..+++.+.+.+.-+..+.  +..+... ... ..+
T Consensus        97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~-----------------~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~-v~~  158 (297)
T 1j8m_F           97 IPYVIMLVGVQGTGKTTTAGKLAYFYKK-----------------KGFKVGLVGADVYRPAALEQLQQLGQQIGVP-VYG  158 (297)
T ss_dssp             SSEEEEEECSSCSSTTHHHHHHHHHHHH-----------------TTCCEEEEECCCSSSHHHHHHHHHHHHHTCC-EEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH-----------------CCCeEEEEecCCCCHHHHHHHHHHhccCCeE-EEe
Confidence            3558899999999999999999742111                 123444444443322221  1111110 010 000


Q ss_pred             Ccc--cceecee---ccccccceEEEEEeCCCchh--hhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHH
Q psy871           97 TLH--PTRRVWK---DYFPAVDAIVFLVDTSDRER--FEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC  168 (249)
Q Consensus        97 ~~~--~~~~~~~---~~~~~~~~~~~v~D~~g~~~--~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~  168 (249)
                      +..  .......   ......+..++++||||...  ... ....+... .....+|.+++|+|+...   .........
T Consensus       159 ~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i-~~~~~~d~vllVvda~~g---~~~~~~~~~  234 (297)
T 1j8m_F          159 EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNI-YEAIKPDEVTLVIDASIG---QKAYDLASK  234 (297)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHH-HHHHCCSEEEEEEEGGGG---GGHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHH-HHHhcCCEEEEEeeCCch---HHHHHHHHH
Confidence            000  0000000   11111345689999999765  221 22212111 223468999999998753   222223333


Q ss_pred             HHhccCCCCCc-EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          169 LLTDESLASCP-VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       169 ~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      +.     ...| ..+|+||+|...  ....+........                 .|+..++  .|+++++
T Consensus       235 ~~-----~~~~i~gvVlnk~D~~~--~~g~~~~~~~~~~-----------------~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          235 FN-----QASKIGTIIITKMDGTA--KGGGALSAVAATG-----------------ATIKFIG--TGEKIDE  280 (297)
T ss_dssp             HH-----HTCTTEEEEEECGGGCT--THHHHHHHHHTTT-----------------CCEEEEE--CSSSTTC
T ss_pred             HH-----hhCCCCEEEEeCCCCCc--chHHHHHHHHHHC-----------------cCEEEEe--CCCChhh
Confidence            32     1356 778999999753  2333444444433                 5666655  5666654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.61  E-value=1e-08  Score=79.52  Aligned_cols=85  Identities=12%  Similarity=0.017  Sum_probs=60.5

Q ss_pred             hhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCC
Q psy871          136 CLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATP  215 (249)
Q Consensus       136 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (249)
                      ++...+..+|+++.|+|+.++.+....  .+. +     . ++|.++|+||+|+.+....+.+.++++..+         
T Consensus        14 ~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g---------   75 (262)
T 3cnl_A           14 QIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQG---------   75 (262)
T ss_dssp             HHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTT---------
T ss_pred             HHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHcC---------
Confidence            344667899999999999998766542  111 1     1 799999999999986422233334443322         


Q ss_pred             CCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          216 RSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       216 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                              .++ .+||+++.|++++++.+.+.
T Consensus        76 --------~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           76 --------KRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             --------CCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             --------CeE-EEECCCCcCHHHHHHHHHHh
Confidence                    467 99999999999999887653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.51  E-value=1.5e-07  Score=75.33  Aligned_cols=174  Identities=16%  Similarity=0.151  Sum_probs=84.3

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhc-CC--cccc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKD-DR--LAQP   94 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~-~~--~~~~   94 (249)
                      +.-.++++|++||||||+++.|.+....                 ..+++.+.+.+.......  ...+.. ..  +...
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~-----------------~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q  190 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKN-----------------HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKH  190 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHH-----------------TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh-----------------cCCEEEEEeecccccchHHHHHHHHHHcCceEEec
Confidence            4568999999999999999999753111                 233455555444322111  111110 00  0000


Q ss_pred             cCCcccceeceec--cccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           95 VPTLHPTRRVWKD--YFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        95 ~~~~~~~~~~~~~--~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                      ..+..........  .....+..+.++|++|.... ......+...... -..|-.++++|+....   ++......+..
T Consensus       191 ~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ra-l~~de~llvLDa~t~~---~~~~~~~~~~~  266 (328)
T 3e70_C          191 SYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARV-TKPNLVIFVGDALAGN---AIVEQARQFNE  266 (328)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHH-HCCSEEEEEEEGGGTT---HHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHH-hcCCCCEEEEecHHHH---HHHHHHHHHHH
Confidence            0000000000000  00011233567999996432 2222323222222 2378889999987653   22223344322


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          172 DESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      .    .....+++||.|-..  ....+........                 .|+..++  +|+++++
T Consensus       267 ~----~~it~iilTKlD~~a--~~G~~l~~~~~~~-----------------~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          267 A----VKIDGIILTKLDADA--RGGAALSISYVID-----------------APILFVG--VGQGYDD  309 (328)
T ss_dssp             H----SCCCEEEEECGGGCS--CCHHHHHHHHHHT-----------------CCEEEEE--CSSSTTC
T ss_pred             h----cCCCEEEEeCcCCcc--chhHHHHHHHHHC-----------------CCEEEEe--CCCCccc
Confidence            1    134478899999633  2233444444444                 5666665  6666644

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.41  E-value=1.6e-07  Score=73.58  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=24.2

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      ..+..+++++|.||+|||||+|+|++..
T Consensus       117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          117 KPRAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCceEEEEecCCCchHHHHHHHhcCc
Confidence            3456799999999999999999998754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.40  E-value=1.8e-07  Score=73.96  Aligned_cols=85  Identities=11%  Similarity=0.056  Sum_probs=59.1

Q ss_pred             cccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCC----HHHHHHHhhhcccccCcccCC
Q psy871          140 DESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAAS----EEEIRQYFGLYGLTTGKVATP  215 (249)
Q Consensus       140 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~  215 (249)
                      .++.+|.+++|+|+.+|..-..   .+.+++......++|.++|+||+|+.++..    .+++...++..+         
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~---~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g---------  150 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTA---LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG---------  150 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHH---HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT---------
T ss_pred             HHHhCCEEEEEEeCCCCCCCHH---HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC---------
Confidence            4678999999999997655443   233333221126899999999999987532    234444444444         


Q ss_pred             CCCCCCCceeEEEeeeccccchHHHHHHH
Q psy871          216 RSEMSGRPIELFMCSVLMRQGYGDGFRWL  244 (249)
Q Consensus       216 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  244 (249)
                              .+++.+||+++.|+++++..+
T Consensus       151 --------~~v~~~sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          151 --------YDVYLTSSKDQDSLADIIPHF  171 (307)
T ss_dssp             --------CCEEECCHHHHTTCTTTGGGG
T ss_pred             --------CeEEEEecCCCCCHHHHHhhc
Confidence                    689999999999998877654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.39  E-value=4.1e-07  Score=77.99  Aligned_cols=28  Identities=21%  Similarity=0.293  Sum_probs=24.8

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      ..+..+|+|+|+||+|||||+|+|++..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            4566799999999999999999998865

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.35  E-value=1.7e-06  Score=75.10  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=22.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .-+.++|+|++|||||||++.|.+-.
T Consensus        44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           44 ALPAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             cCCeEEEECCCCChHHHHHHHHhCCC
Confidence            34569999999999999999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.35  E-value=1.5e-06  Score=72.58  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=21.1

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.-.++|+|+.|||||||++.|.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            345899999999999999999975

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.27  E-value=1.1e-05  Score=63.59  Aligned_cols=25  Identities=36%  Similarity=0.448  Sum_probs=21.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+...++++|+.||||||++..|..
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999975

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.26  E-value=3.6e-07  Score=70.83  Aligned_cols=25  Identities=36%  Similarity=0.725  Sum_probs=21.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      .+++++|.+|+|||||+|+|.+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            5899999999999999999986544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.12  E-value=5.4e-06  Score=66.82  Aligned_cols=87  Identities=17%  Similarity=0.100  Sum_probs=52.9

Q ss_pred             ccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCC
Q psy871          141 ESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMS  220 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (249)
                      .+.+|.+++|... .|..-..   .+.+++......++|.++|+||+|+.+....+.+.++...+.              
T Consensus       128 ~anvD~v~iv~a~-~P~~~~~---~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~--------------  189 (358)
T 2rcn_A          128 AANIDQIVIVSAI-LPELSLN---IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR--------------  189 (358)
T ss_dssp             EECCCEEEEEEES-TTTCCHH---HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH--------------
T ss_pred             HhcCCEEEEEEeC-CCCCCHH---HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH--------------
Confidence            5778999977554 4433222   233332111115788999999999986422112333333321              


Q ss_pred             CCceeEEEeeeccccchHHHHHHHh
Q psy871          221 GRPIELFMCSVLMRQGYGDGFRWLA  245 (249)
Q Consensus       221 ~~~~~~~~~Sa~~g~gv~~l~~~l~  245 (249)
                      ....+++.+||+++.|++++...+.
T Consensus       190 ~~G~~v~~~Sa~~~~gl~~L~~~~~  214 (358)
T 2rcn_A          190 NIGYRVLMVSSHTQDGLKPLEEALT  214 (358)
T ss_dssp             TTTCCEEECBTTTTBTHHHHHHHHT
T ss_pred             hCCCcEEEEecCCCcCHHHHHHhcC
Confidence            0126799999999999999887653

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.11  E-value=2.4e-05  Score=62.35  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=20.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+++|++|+||||++..|..
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999975

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.08  E-value=1.1e-05  Score=63.72  Aligned_cols=160  Identities=16%  Similarity=0.120  Sum_probs=76.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhc-CCcccccC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKD-DRLAQPVP   96 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~-~~~~~~~~   96 (249)
                      +...++++|+.|+||||++..|.+....                 ..+++.+.+.+.......  +..+.. ........
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~-----------------~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~  159 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-----------------KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV  159 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHH-----------------TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH-----------------cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEc
Confidence            4558899999999999999999753211                 234555555555443322  111111 01110000


Q ss_pred             Ccccce-eceecc---ccccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           97 TLHPTR-RVWKDY---FPAVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        97 ~~~~~~-~~~~~~---~~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                      +..... ......   ....+..++++|+|+..... ............ -.++.+++|+|+...   .+.......+..
T Consensus       160 ~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~-~~~~~~~lv~~~~~~---~~~~~~~~~~~~  235 (295)
T 1ls1_A          160 MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV-LGPDEVLLVLDAMTG---QEALSVARAFDE  235 (295)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH-HCCSEEEEEEEGGGT---HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh-cCCCEEEEEEeCCCc---HHHHHHHHHHhh
Confidence            000000 000011   11134568999999754331 112222222222 247888899998753   222222333321


Q ss_pred             ccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871          172 DESLASCPVLILGNKIDKHGAASEEEIRQYFGLYG  206 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  206 (249)
                      .    -...-+|+||+|....  ...+.+.....+
T Consensus       236 ~----~~i~givlnk~d~~~~--~g~~~~~~~~~~  264 (295)
T 1ls1_A          236 K----VGVTGLVLTKLDGDAR--GGAALSARHVTG  264 (295)
T ss_dssp             H----TCCCEEEEECGGGCSS--CHHHHHHHHHHC
T ss_pred             c----CCCCEEEEECCCCCcc--HHHHHHHHHHHC
Confidence            1    1234578999997542  234444444444

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.08  E-value=1.6e-05  Score=66.00  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=40.2

Q ss_pred             ceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecCCCC
Q psy871          113 DAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKIDKH  190 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  190 (249)
                      +..++++||||.-... .....+.. +.....++.+++|+|+.....   .......+-     ...+ .-+|+||+|..
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~-~~~~~~p~~vllVvda~~g~~---~~~~~~~f~-----~~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQ-VHASINPVETLFVVDAMTGQD---AANTAKAFN-----EALPLTGVVLTKVDGD  253 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHH-HHHHSCCSEEEEEEETTBCTT---HHHHHHHHH-----HHSCCCCEEEECTTSS
T ss_pred             CCCEEEEECCCcccccHHHHHHHHH-HHHhhcCcceeEEeecchhHH---HHHHHHHHh-----ccCCCeEEEEecCCCC
Confidence            4568999999965432 22222211 123346889999999976422   222333331     1234 34689999975


Q ss_pred             CC
Q psy871          191 GA  192 (249)
Q Consensus       191 ~~  192 (249)
                      ..
T Consensus       254 ~~  255 (433)
T 2xxa_A          254 AR  255 (433)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.07  E-value=2.8e-05  Score=61.47  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=20.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+++|++|+||||++..|.+
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Confidence            345799999999999999999975

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.06  E-value=7.9e-06  Score=67.44  Aligned_cols=147  Identities=17%  Similarity=0.161  Sum_probs=71.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHhcC-CcccccC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLKDD-RLAQPVP   96 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~~~-~~~~~~~   96 (249)
                      +...++++|++|+||||++..|......                 ...++.+.+.+.......  +..+... .++....
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~-----------------~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~  159 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-----------------KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV  159 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT-----------------TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH-----------------cCCeEEEeeccccCchhHHHHHHhcccCCccEEec
Confidence            4567999999999999999999753211                 233455555554443332  1111110 0110000


Q ss_pred             Cccc-ceeceecccc---ccceEEEEEeCCCchhhh-hhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh
Q psy871           97 TLHP-TRRVWKDYFP---AVDAIVFLVDTSDRERFE-ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT  171 (249)
Q Consensus        97 ~~~~-~~~~~~~~~~---~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  171 (249)
                      +... ........+.   ..+..++++||||.-... .....+... .....+|.+++|+|+...   ++.......+..
T Consensus       160 ~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i-~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~  235 (425)
T 2ffh_A          160 MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARL-KEVLGPDEVLLVLDAMTG---QEALSVARAFDE  235 (425)
T ss_dssp             CTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHH-HHHHCCSEEEEEEEGGGT---THHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHh-hhccCCceEEEEEeccch---HHHHHHHHHHHh
Confidence            1000 0011011111   134558899999864322 112211111 112358889999998753   222223333321


Q ss_pred             ccCCCCCcEEEEEecCCCCC
Q psy871          172 DESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       172 ~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .    -...-+|+||.|...
T Consensus       236 ~----l~i~GVIlTKlD~~~  251 (425)
T 2ffh_A          236 K----VGVTGLVLTKLDGDA  251 (425)
T ss_dssp             H----TCCCEEEEESGGGCS
T ss_pred             c----CCceEEEEeCcCCcc
Confidence            1    112567899999643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.03  E-value=2.4e-05  Score=61.88  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=21.3

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.-.++++|++|||||||++.|.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            345899999999999999999975

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.88  E-value=0.00032  Score=55.82  Aligned_cols=25  Identities=36%  Similarity=0.494  Sum_probs=21.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -..++|+|+.|||||||++.|.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4578999999999999999998753

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.82  E-value=1.9e-05  Score=65.49  Aligned_cols=27  Identities=15%  Similarity=0.080  Sum_probs=23.7

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..+-..|+|+|++++|||||+|+|.+.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            456778999999999999999999863

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.82  E-value=1.2e-05  Score=59.93  Aligned_cols=39  Identities=18%  Similarity=0.094  Sum_probs=29.6

Q ss_pred             HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871            4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +.+.++..+.-.  ..+...|+|+|++|||||||++.|.+.
T Consensus         7 ~~~~~~~~~~~~--~~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A            7 LCQGVLERLDPR--QPGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             HHHHHHHHSCTT--CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            566666555433  345568999999999999999999763

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.76  E-value=1.3e-05  Score=58.37  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +++++|++|||||||++.|++..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999998643

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.73  E-value=1.5e-05  Score=58.05  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=21.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +...++|+||+|||||||++.|.+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3457999999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.71  E-value=1.5e-05  Score=58.24  Aligned_cols=61  Identities=21%  Similarity=0.348  Sum_probs=40.6

Q ss_pred             EEEeccCCcchHHHHHHHhcCC-----CCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           24 LLFLGLDNAGKTTLLHMLKDDR-----LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      |+|+||+|||||||+++|....     ++.+.+|..+..+..    ...+..+     ..+..|......+.|.+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~----~G~dY~F-----vs~~eF~~~i~~g~flE   69 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV----NGKDYNF-----VSVDEFKSMIKNNEFIE   69 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC----BTTTBEE-----CCHHHHHHHHHTTCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc----CCceeEe-----ecHHHHHHHHHcCCEEE
Confidence            8899999999999999998542     235666777666665    3222222     33556666666666553

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.70  E-value=1.6e-05  Score=58.87  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=20.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...++|+||+|||||||++.|.+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            347999999999999999999863

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.59  E-value=3.3e-05  Score=56.90  Aligned_cols=25  Identities=16%  Similarity=0.397  Sum_probs=22.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +...|+|+||+|||||||+++|...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            4557899999999999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.57  E-value=3.5e-05  Score=57.11  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..++|+|++|||||||++.|.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            47899999999999999999875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.56  E-value=0.00027  Score=52.27  Aligned_cols=79  Identities=8%  Similarity=-0.009  Sum_probs=46.6

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC--CCCCcEEEEEecCCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES--LASCPVLILGNKIDKHG  191 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~  191 (249)
                      ..++++|+|+...  ....      ..+..+|.+++++..+..+  ......+..+ ....  ..+.++.+|+|++|...
T Consensus        76 yD~viiD~~~~~~--~~~~------~~l~~ad~viiv~~~~~~~--~~~~~~~~~l-~~~~~~~~~~~~~vv~N~~~~~~  144 (206)
T 4dzz_A           76 YDFAIVDGAGSLS--VITS------AAVMVSDLVIIPVTPSPLD--FSAAGSVVTV-LEAQAYSRKVEARFLITRKIEMA  144 (206)
T ss_dssp             SSEEEEECCSSSS--HHHH------HHHHHCSEEEEEECSCTTT--HHHHHHHHHH-HTTSCGGGCCEEEEEECSBCTTE
T ss_pred             CCEEEEECCCCCC--HHHH------HHHHHCCEEEEEecCCHHH--HHHHHHHHHH-HHHHHhCCCCcEEEEEeccCCCc
Confidence            4588999997542  2222      2345689999999887765  3343333333 2211  24567899999999543


Q ss_pred             CCCHHHHHHHhhh
Q psy871          192 AASEEEIRQYFGL  204 (249)
Q Consensus       192 ~~~~~~~~~~~~~  204 (249)
                      . ..+++.+.++.
T Consensus       145 ~-~~~~~~~~l~~  156 (206)
T 4dzz_A          145 T-MLNVLKESIKD  156 (206)
T ss_dssp             E-EEHHHHHHHHH
T ss_pred             h-HHHHHHHHHHH
Confidence            2 22344444444

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.55  E-value=3.3e-05  Score=58.08  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -.++|+||+|||||||++.|.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            378999999999999999998753

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.55  E-value=3.8e-05  Score=56.27  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..++|+|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            36999999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.55  E-value=3.3e-05  Score=57.53  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.8

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+|++|||||||++.|.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            68999999999999999998753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.53  E-value=3.7e-05  Score=57.83  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+||+|||||||++.|.+.
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            37899999999999999999874

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.50  E-value=5.1e-05  Score=58.13  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHh
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~   42 (249)
                      .+...|+|+|++|||||||++.|.
T Consensus        25 ~~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           25 SKLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999998

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.50  E-value=2.7e-05  Score=65.51  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=22.2

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..++.+|+++|.+||||||+.++|...
T Consensus        36 ~~~~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           36 TNCPTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            355679999999999999999999753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.50  E-value=4.9e-05  Score=57.84  Aligned_cols=30  Identities=23%  Similarity=0.334  Sum_probs=23.4

Q ss_pred             cccceec-ceEEEeccCCcchHHHHHHHhcC
Q psy871           15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++.-++ -.++|+|+.|||||||++.|.+-
T Consensus        24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3444333 37899999999999999999764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.49  E-value=5.3e-05  Score=56.49  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=22.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +...|+|+||+|||||||+++|....
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            44579999999999999999998653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.49  E-value=4.4e-05  Score=55.09  Aligned_cols=20  Identities=20%  Similarity=0.358  Sum_probs=18.3

Q ss_pred             eEEEeccCCcchHHHHHHHh
Q psy871           23 KLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~   42 (249)
                      .++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            68999999999999999864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.48  E-value=8.9e-05  Score=53.82  Aligned_cols=39  Identities=18%  Similarity=0.062  Sum_probs=27.1

Q ss_pred             hHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871            5 WDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ++.+..++.-+.... ...++++|++|+|||||++++.+.
T Consensus        23 ~~~~~~~~~~~~~~~-g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           23 LLTIRVFVHNFNPEE-GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             HHHHHHHHHSCCGGG-CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccC-CCEEEEECCCCCCHHHHHHHHHHH
Confidence            334444444444333 457899999999999999999753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.48  E-value=5.6e-05  Score=53.76  Aligned_cols=23  Identities=30%  Similarity=0.215  Sum_probs=21.1

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++++|+.|||||||++.|.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            78999999999999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.47  E-value=5.6e-05  Score=57.09  Aligned_cols=30  Identities=33%  Similarity=0.428  Sum_probs=23.3

Q ss_pred             cccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           15 LGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        15 ~~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++.-++- .++|+|+.|||||||++.+.+-
T Consensus        23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34443333 6889999999999999999864

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.47  E-value=5.9e-05  Score=55.93  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      ...|+|+|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4579999999999999999998754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.45  E-value=5.8e-05  Score=56.29  Aligned_cols=24  Identities=29%  Similarity=0.225  Sum_probs=21.3

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...|+|+|++|||||||++.|.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.45  E-value=5.8e-05  Score=54.35  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|+|+|++||||||+.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999975

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.44  E-value=6.7e-05  Score=57.26  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|||||||++.+.+-
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.42  E-value=6.5e-05  Score=59.63  Aligned_cols=25  Identities=20%  Similarity=0.121  Sum_probs=22.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+...|+|+|++|||||||++.|.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4556899999999999999999986

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.41  E-value=7.2e-05  Score=56.97  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=20.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||++.|.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999999764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.41  E-value=6.9e-05  Score=56.08  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=20.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||++.|.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999999874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.40  E-value=7.4e-05  Score=60.23  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .-.++++|++|||||||+|.|.+..
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCEEEEECCCCccHHHHHHHHhccc
Confidence            3479999999999999999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.39  E-value=7.8e-05  Score=57.02  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+|+.|||||||++.|.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999998753

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.39  E-value=7.8e-05  Score=58.05  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=24.3

Q ss_pred             cccccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           13 GYLGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        13 ~~~~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .-+++.-++- .++|+|+.|||||||++.|.+-
T Consensus        25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            3334443443 6899999999999999999874

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.39  E-value=8.8e-05  Score=54.23  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=20.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+|.|++||||||+.+.|..
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999964

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.39  E-value=8.3e-05  Score=55.02  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=20.7

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|+|+|++|||||||++.|.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999965

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.38  E-value=8.2e-05  Score=57.03  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||++.|.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999999875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.38  E-value=3.9e-05  Score=60.63  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=20.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .-.++++|++|||||||+|+|.+.
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHhccc
Confidence            358999999999999999999754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.38  E-value=8.3e-05  Score=57.65  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=20.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|||||||++.|.+-
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            37899999999999999999874

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.38  E-value=8.2e-05  Score=57.55  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=23.4

Q ss_pred             cccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           15 LGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        15 ~~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++.-++- .++|+|+.|||||||++.|.+-
T Consensus        25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           25 VSLQARAGDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34443333 6899999999999999999874

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.37  E-value=6.8e-05  Score=55.88  Aligned_cols=23  Identities=26%  Similarity=0.170  Sum_probs=21.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|||||||++.+.+.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999875

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.37  E-value=8.5e-05  Score=56.26  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=20.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||++.|.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999874

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.37  E-value=8.4e-05  Score=57.34  Aligned_cols=31  Identities=23%  Similarity=0.430  Sum_probs=24.0

Q ss_pred             ccccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           14 YLGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        14 ~~~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -+++.-++- .++|+|+.|||||||++.+.+-
T Consensus        25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            344443333 7899999999999999999874

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.37  E-value=8.8e-05  Score=55.06  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...|+|+|++||||||+.++|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            347899999999999999999753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.37  E-value=8.2e-05  Score=58.68  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      -.++|+|++|||||||++.|.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            3789999999999999999985

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.36  E-value=0.0001  Score=53.25  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|++.|++||||||+.++|..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999975

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.36  E-value=9.1e-05  Score=57.29  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||++.|.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            7899999999999999999874

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.35  E-value=8.9e-05  Score=54.39  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=20.1

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++++|++|+|||||++.|.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            6899999999999999999864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.35  E-value=8.7e-05  Score=54.30  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=19.4

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .++|+|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999999975

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.35  E-value=9.5e-05  Score=56.42  Aligned_cols=30  Identities=30%  Similarity=0.422  Sum_probs=23.4

Q ss_pred             cccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           15 LGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        15 ~~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++.-++- .++|+|+.|||||||++.|.+-
T Consensus        25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            33443333 7899999999999999999874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.35  E-value=9.5e-05  Score=56.96  Aligned_cols=29  Identities=28%  Similarity=0.399  Sum_probs=23.1

Q ss_pred             ccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           16 GLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        16 ~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ++.-++- .++|+|+.|||||||++.|++-
T Consensus        35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3443333 7899999999999999999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.34  E-value=9.7e-05  Score=57.07  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=20.5

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||++.|.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            7899999999999999999874

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.34  E-value=0.00011  Score=52.89  Aligned_cols=20  Identities=25%  Similarity=0.556  Sum_probs=18.9

Q ss_pred             ceEEEeccCCcchHHHHHHH
Q psy871           22 GKLLFLGLDNAGKTTLLHML   41 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l   41 (249)
                      +.|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.34  E-value=9.9e-05  Score=56.61  Aligned_cols=33  Identities=36%  Similarity=0.461  Sum_probs=24.9

Q ss_pred             hcccccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           12 LGYLGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        12 ~~~~~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +.-+++.-++- .++|+|+.|||||||++.|.+-
T Consensus        16 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            33444443343 6899999999999999999764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.33  E-value=0.0001  Score=53.99  Aligned_cols=25  Identities=28%  Similarity=0.248  Sum_probs=20.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      |++..|++.|++||||||+.+.|..
T Consensus         1 M~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            1 MKPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             --CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999864

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.33  E-value=9.3e-05  Score=53.41  Aligned_cols=22  Identities=14%  Similarity=0.389  Sum_probs=20.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|+|+|++||||||+.+.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999965

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.33  E-value=0.0001  Score=57.30  Aligned_cols=31  Identities=23%  Similarity=0.310  Sum_probs=23.9

Q ss_pred             ccccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           14 YLGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        14 ~~~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -+++.-++- .++|+|+.|||||||++.|.+-
T Consensus        37 ~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           37 GLTFTLYPGKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            334443333 7899999999999999999875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.32  E-value=0.00011  Score=56.47  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=20.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||++.|.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.32  E-value=0.00011  Score=54.26  Aligned_cols=29  Identities=28%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             cccceec-ceEEEeccCCcchHHHHHHHhc
Q psy871           15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +++.+++ ..|+++|++||||||+.+.|..
T Consensus        18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             eeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3444444 3899999999999999999974

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.32  E-value=0.00011  Score=57.45  Aligned_cols=30  Identities=40%  Similarity=0.629  Sum_probs=23.5

Q ss_pred             cccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           15 LGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        15 ~~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++.-++- .++|+|+.|||||||++.|++-
T Consensus        40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            34443333 7899999999999999999874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.30  E-value=7.9e-05  Score=53.71  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=20.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..++|+|++|||||||++.|.+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999975

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.30  E-value=0.00012  Score=54.25  Aligned_cols=23  Identities=17%  Similarity=0.580  Sum_probs=20.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|+|+|++||||||+.+.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999965

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.30  E-value=0.00012  Score=56.82  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=20.6

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||++.|++-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999874

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.30  E-value=0.00013  Score=52.31  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=19.4

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999964

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.29  E-value=0.00012  Score=56.35  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.28  E-value=0.00012  Score=54.11  Aligned_cols=24  Identities=33%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+|+|++||||||+.+.|.+
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            445899999999999999999965

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.28  E-value=0.00012  Score=56.56  Aligned_cols=24  Identities=33%  Similarity=0.504  Sum_probs=21.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.-.++|+|+.|||||||++.|.+
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHH
Confidence            334799999999999999999976

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.28  E-value=0.00012  Score=56.66  Aligned_cols=31  Identities=32%  Similarity=0.446  Sum_probs=23.9

Q ss_pred             ccccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           14 YLGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        14 ~~~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -+++.-++- .++|+|+.|||||||++.|.+-
T Consensus        25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            334443333 7889999999999999999874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.28  E-value=0.00013  Score=54.24  Aligned_cols=25  Identities=36%  Similarity=0.589  Sum_probs=21.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      |+...|++.|++||||||+.+.|..
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3456899999999999999999975

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.28  E-value=0.00012  Score=57.89  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...++++|++|||||||+|+|.+.
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCcHHHHHHHhccc
Confidence            457899999999999999999764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.27  E-value=0.00013  Score=56.37  Aligned_cols=23  Identities=39%  Similarity=0.585  Sum_probs=21.1

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+|+.|||||||++.|.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.27  E-value=0.00014  Score=54.85  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=20.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+|+|+|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999975

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.26  E-value=0.00011  Score=58.04  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|||||||++.|.+-
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CEEEEECCCCchHHHHHHHHHcC
Confidence            37999999999999999999764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.26  E-value=0.00014  Score=52.58  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=20.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|++.|+|||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999975

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.26  E-value=0.00014  Score=53.85  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=20.0

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      +|+|+|++||||||+.+.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            799999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.26  E-value=0.00015  Score=52.38  Aligned_cols=24  Identities=38%  Similarity=0.380  Sum_probs=21.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...++++|++|||||||+++|...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            457899999999999999999753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.26  E-value=0.00016  Score=53.49  Aligned_cols=28  Identities=29%  Similarity=0.243  Sum_probs=23.4

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ....++..|+|+|++||||||+.+.|..
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456667899999999999999999964

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.25  E-value=0.00021  Score=56.75  Aligned_cols=26  Identities=23%  Similarity=0.089  Sum_probs=22.6

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhc
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..++..|+|+|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35566899999999999999999865

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.22  E-value=0.00016  Score=52.58  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999964

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.22  E-value=0.00016  Score=53.61  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=20.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.22  E-value=0.00015  Score=56.55  Aligned_cols=31  Identities=35%  Similarity=0.532  Sum_probs=23.9

Q ss_pred             cccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871           13 GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        13 ~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .-+|+..+.- ++++||+|+|||||++++.+.
T Consensus        37 ~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           37 KALGLVTPAG-VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             HHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred             HHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence            3344444433 999999999999999999863

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.22  E-value=0.00012  Score=55.54  Aligned_cols=30  Identities=20%  Similarity=0.175  Sum_probs=17.6

Q ss_pred             cccceec-ceEEEeccCCcchHHHHHHHh-cC
Q psy871           15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLK-DD   44 (249)
Q Consensus        15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~-~~   44 (249)
                      .++.-++ ..++|+|++|||||||++.|. +.
T Consensus        20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             --CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3444333 368999999999999999998 64

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.21  E-value=0.00016  Score=55.31  Aligned_cols=22  Identities=18%  Similarity=0.143  Sum_probs=20.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|+|+|+.|||||||++.|.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.20  E-value=0.00019  Score=52.32  Aligned_cols=25  Identities=28%  Similarity=0.493  Sum_probs=21.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +..+|+|+|++||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3457999999999999999999764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.20  E-value=0.00018  Score=52.14  Aligned_cols=24  Identities=33%  Similarity=0.344  Sum_probs=21.1

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+++|++||||||+.++|..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            456799999999999999999973

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.20  E-value=0.00017  Score=52.74  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|++.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999964

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.20  E-value=0.00018  Score=53.13  Aligned_cols=28  Identities=18%  Similarity=0.073  Sum_probs=23.4

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +.++...|+|+|++||||||+.+.|...
T Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            4 EAKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            4566778999999999999999999764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.19  E-value=0.00017  Score=56.96  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             cceEEEeccCCcchHHHHHHHh
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~   42 (249)
                      ...++++|++|||||||+|+|.
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999999997

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.18  E-value=0.00019  Score=53.29  Aligned_cols=24  Identities=33%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...|+|+|++||||||+.+.|...
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999875

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.18  E-value=0.00018  Score=57.98  Aligned_cols=23  Identities=39%  Similarity=0.531  Sum_probs=21.0

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+||+|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            68999999999999999998754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.18  E-value=0.00026  Score=55.55  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=21.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ++...|++.|+|||||||+.++|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999999975

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.18  E-value=0.0002  Score=53.49  Aligned_cols=21  Identities=29%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999954

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.17  E-value=0.00023  Score=51.07  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      -..++++|++|||||||+.+|..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999975

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.16  E-value=0.00019  Score=56.27  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=20.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||++.|.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            7899999999999999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.16  E-value=0.00023  Score=51.82  Aligned_cols=23  Identities=30%  Similarity=0.431  Sum_probs=20.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|+++|++||||||+.++|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999964

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.15  E-value=0.00019  Score=54.13  Aligned_cols=26  Identities=27%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+--.++|+|++|||||||++.|++.
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            33447899999999999999999863

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.15  E-value=0.00023  Score=52.57  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=21.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +...|+|.|++||||||+.+.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999999999764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.15  E-value=0.00022  Score=53.28  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=19.4

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      +|+|+|++||||||+.++|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999964

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.14  E-value=0.00017  Score=52.35  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=17.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ++...|++.|++||||||+.+.|..
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999964

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.14  E-value=0.00021  Score=57.56  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=24.8

Q ss_pred             ccccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871           14 YLGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        14 ~~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -+++.-++ -.++|+|+.|||||||++.|.+-.
T Consensus        33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34444334 378999999999999999998754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.14  E-value=0.00021  Score=54.55  Aligned_cols=25  Identities=36%  Similarity=0.539  Sum_probs=22.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .++.+|+|+|++||||||+.++|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4667999999999999999999964

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.13  E-value=0.00023  Score=52.53  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=19.5

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999975

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.13  E-value=0.00019  Score=58.28  Aligned_cols=23  Identities=26%  Similarity=0.418  Sum_probs=21.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -+++|+|++|||||||++.|.+.
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.13  E-value=0.00022  Score=57.56  Aligned_cols=31  Identities=32%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             cccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871           15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +++.-++ -.++|+|+.|||||||++.+.+-.
T Consensus        22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            3444333 368999999999999999999754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.12  E-value=0.00023  Score=57.52  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+|+.|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            68999999999999999998753

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.12  E-value=0.00023  Score=54.68  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=21.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHh
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~   42 (249)
                      ++...|+|+|++||||||+++.|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            344689999999999999999997

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.12  E-value=0.00025  Score=53.17  Aligned_cols=24  Identities=29%  Similarity=0.428  Sum_probs=21.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+++|++||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999964

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.12  E-value=0.00026  Score=52.60  Aligned_cols=24  Identities=38%  Similarity=0.601  Sum_probs=21.5

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+|.|++||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999974

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.11  E-value=0.00024  Score=57.47  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=21.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            368999999999999999998754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.10  E-value=0.00027  Score=52.63  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=21.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+|.|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999974

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.10  E-value=0.00018  Score=50.63  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +...++++|++|+|||||++++.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4557999999999999999999763

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.10  E-value=0.00025  Score=57.67  Aligned_cols=23  Identities=35%  Similarity=0.586  Sum_probs=21.1

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            68999999999999999999754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.10  E-value=0.00024  Score=52.62  Aligned_cols=25  Identities=36%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+...|+|+|++|||||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999999975

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.09  E-value=0.00025  Score=52.00  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+++|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999964

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.09  E-value=0.00022  Score=57.40  Aligned_cols=31  Identities=32%  Similarity=0.432  Sum_probs=24.3

Q ss_pred             cccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871           15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +++.-++ -.++|+|+.|+|||||++.+.+-.
T Consensus        19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             eEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            4444333 378999999999999999998754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.09  E-value=0.00026  Score=51.67  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999964

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.09  E-value=0.00024  Score=56.36  Aligned_cols=26  Identities=19%  Similarity=0.112  Sum_probs=22.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+...|+|+|++|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34458999999999999999999863

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.09  E-value=0.00025  Score=57.51  Aligned_cols=31  Identities=39%  Similarity=0.460  Sum_probs=24.1

Q ss_pred             cccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871           15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +++.-++ -.++|+|+.|||||||++.+.+-.
T Consensus        30 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3444333 378999999999999999999754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.09  E-value=0.00026  Score=57.55  Aligned_cols=31  Identities=32%  Similarity=0.443  Sum_probs=24.1

Q ss_pred             cccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871           15 LGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        15 ~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +++.-++ -.++|+|+.|+|||||++.+.+-.
T Consensus        22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            3444333 368999999999999999998754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.08  E-value=0.00025  Score=55.67  Aligned_cols=26  Identities=15%  Similarity=0.107  Sum_probs=22.5

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhc
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..+...|+|+|++|||||||.+.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35567899999999999999999874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.07  E-value=0.0003  Score=53.10  Aligned_cols=24  Identities=17%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+|.|++||||||+.+.|..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999974

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.05  E-value=0.00026  Score=56.62  Aligned_cols=33  Identities=15%  Similarity=0.158  Sum_probs=24.7

Q ss_pred             hcccccce-ecceEEEeccCCcchHHHHHHHhcC
Q psy871           12 LGYLGLWT-KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        12 ~~~~~~~~-~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +..+++.- +.-.++|+|+.|||||||++.|.+.
T Consensus       161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred             HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            33444442 2338999999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.04  E-value=0.0003  Score=51.28  Aligned_cols=25  Identities=36%  Similarity=0.444  Sum_probs=21.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ++...|+++|++||||||+.+.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4556899999999999999999964

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.04  E-value=0.00028  Score=56.99  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=20.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      -.++|+|+.|||||||++++.+
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3899999999999999999975

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.04  E-value=0.00031  Score=50.87  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=21.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ++...|+++|++||||||+.+.|..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999965

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.03  E-value=0.00021  Score=57.64  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=25.1

Q ss_pred             cccccceec-ceEEEeccCCcchHHHHHHHhcCC
Q psy871           13 GYLGLWTKS-GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        13 ~~~~~~~~~-~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .-+++.-++ -.++|+|+.|||||||++.+.+-.
T Consensus        22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            334444333 378999999999999999998754

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.03  E-value=0.00029  Score=54.06  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.6

Q ss_pred             EEEeccCCcchHHHHHHHhcC
Q psy871           24 LLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~   44 (249)
                      ++++|++|+|||||++++.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.02  E-value=0.00029  Score=57.11  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|||||||++.|.+.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            48999999999999999999874

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.02  E-value=0.00036  Score=52.78  Aligned_cols=25  Identities=20%  Similarity=0.150  Sum_probs=21.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +++..|+|.|++||||||+.+.|..
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999963

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.01  E-value=0.00035  Score=52.50  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+|+|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999964

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.01  E-value=0.00038  Score=51.75  Aligned_cols=22  Identities=41%  Similarity=0.440  Sum_probs=19.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+|+++|||||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999975

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.99  E-value=0.00035  Score=57.08  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|++|+|||||++.|.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            7899999999999999999874

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.98  E-value=0.00033  Score=51.45  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|+|.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999964

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.98  E-value=0.00038  Score=50.19  Aligned_cols=21  Identities=33%  Similarity=0.681  Sum_probs=19.5

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999964

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.97  E-value=0.00041  Score=51.83  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.5

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999965

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.97  E-value=0.00036  Score=51.42  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..+++.||||+||||+..+|..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.96  E-value=0.00038  Score=52.09  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=19.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|+|+|+|||||+|...+|..
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999975

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.95  E-value=0.00045  Score=52.35  Aligned_cols=27  Identities=30%  Similarity=0.249  Sum_probs=22.2

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...+...|+++|++||||||+.++|..
T Consensus        12 ~~~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           12 ESPKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            445567899999999999999999964

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.95  E-value=0.00026  Score=52.69  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=19.3

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999964

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.94  E-value=0.00038  Score=56.65  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=20.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      -.++|+|++|||||||++.|.+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3699999999999999999976

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.93  E-value=0.00039  Score=54.15  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.6

Q ss_pred             EEEeccCCcchHHHHHHHhcC
Q psy871           24 LLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~   44 (249)
                      ++++|++|+|||||++++.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            999999999999999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.93  E-value=0.00032  Score=53.88  Aligned_cols=26  Identities=27%  Similarity=0.324  Sum_probs=22.5

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhc
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+++..|+++|+|||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34556899999999999999999975

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.93  E-value=0.00049  Score=49.10  Aligned_cols=21  Identities=24%  Similarity=0.521  Sum_probs=19.5

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      +|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999965

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.93  E-value=0.00044  Score=51.77  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=21.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999975

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.92  E-value=0.00042  Score=51.19  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+...|+|.|++||||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999999964

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.92  E-value=0.00056  Score=50.46  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=20.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..+++.|++|+|||||+.++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.89  E-value=0.0005  Score=49.92  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999964

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.87  E-value=0.00058  Score=49.88  Aligned_cols=21  Identities=38%  Similarity=0.558  Sum_probs=19.4

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999965

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.86  E-value=0.00056  Score=50.20  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=22.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +-+..|+|+|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999999975

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.86  E-value=0.00056  Score=51.19  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..+|+++|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999964

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.86  E-value=0.00047  Score=56.92  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=21.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +.-.++|+|+.|||||||++++.+.
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhh
Confidence            3347899999999999999999763

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.00046  Score=57.71  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=22.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +-.+++|+|+.|||||||++.|++-
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            3458999999999999999999874

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.85  E-value=0.00053  Score=54.13  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .-.++++|+.||||||+++.|.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            44899999999999999999976

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.85  E-value=0.00059  Score=49.79  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=20.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|+|+|++||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999964

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.84  E-value=0.015  Score=43.03  Aligned_cols=80  Identities=15%  Similarity=0.064  Sum_probs=46.4

Q ss_pred             ceEEEEEeCCCc-hhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          113 DAIVFLVDTSDR-ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       113 ~~~~~v~D~~g~-~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      ...++++|+|+. ...  ...      ..+..+|.+++++..+.. +...+...+..+...   .+.++.+|+|++|...
T Consensus        67 ~yD~viiD~p~~~~~~--~~~------~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE--DLE------ALADGCDLLVIPSTPDAL-ALDALMLTIETLQKL---GNNRFRILLTIIPPYP  134 (209)
T ss_dssp             GCSEEEEEEECCCSSS--HHH------HHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred             cCCEEEEeCCCCcCcH--HHH------HHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence            345889999875 322  111      234578999999887653 333333333333221   2567889999998654


Q ss_pred             CCCHHHHHHHhhh
Q psy871          192 AASEEEIRQYFGL  204 (249)
Q Consensus       192 ~~~~~~~~~~~~~  204 (249)
                      ....+++.+.++.
T Consensus       135 ~~~~~~~~~~l~~  147 (209)
T 3cwq_A          135 SKDGDEARQLLTT  147 (209)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHH
Confidence            1123455555554

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.84  E-value=0.00048  Score=52.12  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=21.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +...|+|.|+.|||||||++.|.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4458999999999999999999764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.84  E-value=0.00052  Score=58.18  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=20.3

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||+++|++.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5999999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.83  E-value=0.00058  Score=52.68  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|++.|+|||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999999975

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.83  E-value=0.00059  Score=52.35  Aligned_cols=25  Identities=12%  Similarity=0.076  Sum_probs=21.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+...|+|.|++||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999975

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.82  E-value=0.00064  Score=51.13  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=19.3

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999964

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.81  E-value=0.00064  Score=48.71  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=19.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999964

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.81  E-value=0.011  Score=49.09  Aligned_cols=25  Identities=16%  Similarity=0.128  Sum_probs=20.8

Q ss_pred             ceecceEEEeccCCcchHHHHHHHh
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~   42 (249)
                      ..+-..|+|+|+.++|||+|+|.|+
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCchhHHHHHHH
Confidence            3455688899999999999999654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.80  E-value=0.00053  Score=52.52  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..+|+|+|++||||||+.+.|..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999965

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.78  E-value=0.0012  Score=47.75  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=21.2

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ....+++.|++|+|||+|++++...
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999998653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.78  E-value=0.00062  Score=53.17  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+...|+|+|++||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999973

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.78  E-value=0.00071  Score=51.34  Aligned_cols=26  Identities=19%  Similarity=0.291  Sum_probs=22.3

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhc
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.+..+|+|+|++||||||+.+.|..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            35567899999999999999999975

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.76  E-value=0.00063  Score=54.55  Aligned_cols=23  Identities=35%  Similarity=0.606  Sum_probs=20.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..++++||+|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.75  E-value=0.00078  Score=50.91  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|++.|++||||||++++|..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999975

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.73  E-value=0.0007  Score=52.03  Aligned_cols=21  Identities=24%  Similarity=0.297  Sum_probs=19.2

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|+|+|++|||||||.++|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999974

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.73  E-value=0.00092  Score=52.47  Aligned_cols=29  Identities=31%  Similarity=0.477  Sum_probs=24.2

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcC
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +...+...+++.|+||+|||||++++...
T Consensus        49 ~~~~~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           49 GLRAPAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             GGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             cCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            34455678999999999999999999763

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.72  E-value=0.00074  Score=54.37  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=21.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -+++|+|+.|+|||||++.+.+.
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            38999999999999999999875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.71  E-value=0.00087  Score=50.39  Aligned_cols=24  Identities=17%  Similarity=0.110  Sum_probs=20.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +--.++|+|++|+|||||+..++.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            344789999999999999999974

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.70  E-value=0.00083  Score=48.64  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.4

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +-..+|+|+.|+|||||+++|..
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            44789999999999999999875

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.69  E-value=0.00094  Score=50.30  Aligned_cols=25  Identities=32%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +-+.+++|+|+|||||||+..+|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            4567999999999999999999965

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.69  E-value=0.00076  Score=53.01  Aligned_cols=24  Identities=13%  Similarity=0.149  Sum_probs=20.8

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      --.++|+|++|+|||||+..+++.
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            337899999999999999999764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.68  E-value=0.00084  Score=49.98  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=20.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+++|++||||||+.+.|..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999964

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.68  E-value=0.00091  Score=49.45  Aligned_cols=21  Identities=14%  Similarity=0.230  Sum_probs=19.7

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999965

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.68  E-value=0.00045  Score=54.20  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=18.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999999999975

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.67  E-value=0.0011  Score=50.80  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=20.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +..++++|++|+|||||++++.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999999753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.66  E-value=0.00083  Score=56.28  Aligned_cols=22  Identities=23%  Similarity=0.149  Sum_probs=20.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      -.++|+|+.|||||||++.|.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            6789999999999999999986

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.66  E-value=0.00087  Score=57.27  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=21.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -.++|+|+.|||||||++.|.+..
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999999854

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.65  E-value=0.00086  Score=54.15  Aligned_cols=24  Identities=33%  Similarity=0.559  Sum_probs=21.1

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.-.++++|+.||||||+++.|.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            344899999999999999999975

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.62  E-value=0.00091  Score=54.40  Aligned_cols=22  Identities=41%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..++++|++|+|||||++.|.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4889999999999999999975

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.62  E-value=0.00097  Score=53.99  Aligned_cols=59  Identities=25%  Similarity=0.568  Sum_probs=32.9

Q ss_pred             CcccceeceeccccccceEEEEEeCCC----------chhhhhhHHHHhhhhcccccc-ceEEEEEECCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSD----------RERFEESKSELQCLLTDESLA-SSIVFLVDTSD  155 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g----------~~~~~~~~~~~~~~~~~~~~~-d~ii~v~d~~~  155 (249)
                      |....+..|..++++.++.++++|.++          ..++.....++......-... -.++++..-.|
T Consensus       210 Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          210 GQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             C-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             chhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            444456677788889999999999998          456666666555544432112 23455555444

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.61  E-value=0.00094  Score=57.70  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++++|+.|||||||++.|.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            7999999999999999999874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.59  E-value=0.0012  Score=47.12  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.5

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|+|.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999964

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.59  E-value=0.0012  Score=49.18  Aligned_cols=25  Identities=24%  Similarity=0.040  Sum_probs=21.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+--.++|+|++|+|||||+..++.
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3445789999999999999999976

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.0011  Score=57.39  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -.++|+|+.|||||||++.|.+..
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            379999999999999999999854

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.56  E-value=0.0011  Score=55.16  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=20.5

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++|+|++|+|||||++.|.+.
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            8999999999999999999874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.56  E-value=0.0012  Score=49.29  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=21.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      |++..|+|+|++||||||+.+.|..
T Consensus         1 m~~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            1 MKAINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             --CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999965

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.55  E-value=0.0011  Score=56.57  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=21.2

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+|+.|||||||++.|.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            79999999999999999998854

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.55  E-value=0.0011  Score=57.34  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++++|+.|||||||++.|.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999998753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.54  E-value=0.0013  Score=49.54  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...+++.|++|+|||||++++..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999865

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.53  E-value=0.0015  Score=56.56  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++++|+.|||||||++.|.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.53  E-value=0.0012  Score=47.70  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=21.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ....++|.|++|+|||+|++++...
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3557899999999999999998753

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=96.52  E-value=0.031  Score=42.95  Aligned_cols=65  Identities=6%  Similarity=0.009  Sum_probs=39.0

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID  188 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  188 (249)
                      ...++++|+|.....  ...      ..+..+|.+++++..+.. +...+...+..+ ... ..+.++.+|+|+.+
T Consensus       144 ~yD~viiD~pp~~~~--~~~------~~l~~aD~vivv~~~~~~-s~~~~~~~~~~l-~~~-~~~~~~~vv~N~~~  208 (267)
T 3k9g_A          144 KYDYIVIDTNPSLDV--TLK------NALLCSDYVIIPMTAEKW-AVESLDLFNFFV-RKL-NLFLPIFLIITRFK  208 (267)
T ss_dssp             TCSEEEEEECSSCSH--HHH------HHHTTCSEEEEEEESCTT-HHHHHHHHHHHH-HTT-TCCCCEEEEEEEEC
T ss_pred             CCCEEEEECcCCccH--HHH------HHHHHCCeEEEEeCCChH-HHHHHHHHHHHH-HHH-hccCCEEEEEeccc
Confidence            345889999874321  122      234569999999988653 334343333333 222 23567889999994

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.51  E-value=0.0012  Score=57.18  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.6

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -.++|+|+.|||||||++.|.+..
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            378999999999999999998754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.50  E-value=0.0014  Score=49.59  Aligned_cols=26  Identities=23%  Similarity=0.234  Sum_probs=22.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+--.++|+|++|+|||||+..++..
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            44457899999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.48  E-value=0.0011  Score=57.52  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++++|+.|||||||++.|.+-
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            38999999999999999999764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.48  E-value=0.00029  Score=53.12  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.7

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+||.|||||||++++++.
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5689999999999999999864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.47  E-value=0.0022  Score=51.46  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +..+|+++|++|+||||+...|..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            345799999999999999998875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.47  E-value=0.0014  Score=45.99  Aligned_cols=22  Identities=32%  Similarity=0.597  Sum_probs=19.5

Q ss_pred             cceEEEeccCCcchHHHHHHHh
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~   42 (249)
                      +.-.+|+|+.|+||||++.++.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3467899999999999999986

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.46  E-value=0.0014  Score=51.47  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=20.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|++.|+|||||||+.++|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.45  E-value=0.0014  Score=55.97  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+|+.|||||||++.|.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.45  E-value=0.0016  Score=51.39  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=21.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      |+...|+|+||+|||||||..+|...
T Consensus         1 m~~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            1 MKEKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCcCCHHHHHHHHHHh
Confidence            34567899999999999999999854

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.44  E-value=0.00091  Score=57.73  Aligned_cols=23  Identities=26%  Similarity=0.602  Sum_probs=20.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++++|+.|||||||++.|.+-
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcC
Confidence            37899999999999999999764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.41  E-value=0.0022  Score=50.32  Aligned_cols=26  Identities=15%  Similarity=0.041  Sum_probs=21.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..+.-+++.||||+|||+|.+++...
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34456777799999999999999753

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.41  E-value=0.0024  Score=51.80  Aligned_cols=25  Identities=24%  Similarity=0.547  Sum_probs=22.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+...++|.|++|+|||||++.+..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4566899999999999999999975

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.40  E-value=0.0016  Score=55.64  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -.++|+|+.|||||||++.|.+..
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.37  E-value=0.0017  Score=56.27  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.6

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      -.++|+|+.|||||||++.|.+..
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999999854

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.36  E-value=0.0021  Score=48.39  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +..++|.|++|+|||||++.+..
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999975

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.32  E-value=0.0022  Score=48.61  Aligned_cols=29  Identities=21%  Similarity=0.335  Sum_probs=21.9

Q ss_pred             cccceecceEEEeccCCcchHHHHHHHhc
Q psy871           15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      -+-.|+..-|++.|++||||||+++.|..
T Consensus        21 ~~~~~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           21 QSNAMNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             -----CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34446778899999999999999999864

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.32  E-value=0.0019  Score=53.33  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=21.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ++..|+++|+|||||||+.++|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999964

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=96.31  E-value=0.02  Score=43.84  Aligned_cols=71  Identities=14%  Similarity=0.007  Sum_probs=41.1

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh--hhHhhHHHHHHHHhccCCCCCcEE-EEEecCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE--RFEESKSELQCLLTDESLASCPVL-ILGNKID  188 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D  188 (249)
                      .+..++++|+|+.....  ..      ..+..+|.+++++..+...  ....+.+.+..+... ...+.+++ +|.|+.|
T Consensus       110 ~~yD~iiiD~pp~~~~~--~~------~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~~~  180 (257)
T 1wcv_1          110 EGYDLVLLDAPPSLSPL--TL------NALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAG-LNPRLRLLGILVTMYD  180 (257)
T ss_dssp             TTCSEEEEECCSSCCHH--HH------HHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHH-TCTTCEEEEEEEESBC
T ss_pred             cCCCEEEEeCCCCCCHH--HH------HHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHH-hCCCceEEEEEEEeEC
Confidence            34568999999753221  11      2234689999999887642  222222333333221 12456764 8999998


Q ss_pred             CCC
Q psy871          189 KHG  191 (249)
Q Consensus       189 l~~  191 (249)
                      ...
T Consensus       181 ~~~  183 (257)
T 1wcv_1          181 GRT  183 (257)
T ss_dssp             TTC
T ss_pred             CCc
Confidence            644

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.30  E-value=0.0026  Score=51.17  Aligned_cols=20  Identities=35%  Similarity=0.481  Sum_probs=19.2

Q ss_pred             EEEeccCCcchHHHHHHHhc
Q psy871           24 LLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~   43 (249)
                      +++.|++|+||||+++++.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999977

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.29  E-value=0.0019  Score=52.34  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=19.0

Q ss_pred             ceEEEeccCCcchHHHHHHHh
Q psy871           22 GKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~   42 (249)
                      .-.+|+|+.|||||||+++++
T Consensus        24 g~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            357799999999999999987

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.002  Score=55.78  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=20.8

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++|+|+.|||||||++.|.+..
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47999999999999999998854

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.28  E-value=0.0026  Score=47.16  Aligned_cols=21  Identities=38%  Similarity=0.460  Sum_probs=19.3

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+++.|++|+|||+|++++..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999999865

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.23  E-value=0.0033  Score=50.99  Aligned_cols=25  Identities=28%  Similarity=0.500  Sum_probs=22.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .....++|.|++|+|||||++.+..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHH
Confidence            4566899999999999999999975

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.22  E-value=0.0025  Score=49.62  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ....+++.|+||+|||+|++++...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4557999999999999999999753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.21  E-value=0.0036  Score=43.50  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=22.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .....|++.|++|+|||++.+++...
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence            34557999999999999999999753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.20  E-value=0.0027  Score=49.44  Aligned_cols=25  Identities=20%  Similarity=0.139  Sum_probs=21.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+--.++|+|++|+|||||+..+..
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3556899999999999999999886

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.20  E-value=0.0027  Score=48.87  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      -.|++.||||+|||+|..+|..
T Consensus       105 n~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A          105 NTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            3599999999999999999975

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.20  E-value=0.0019  Score=55.26  Aligned_cols=25  Identities=36%  Similarity=0.530  Sum_probs=21.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +...++|+|++|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            4457999999999999999999753

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=96.20  E-value=0.005  Score=46.80  Aligned_cols=64  Identities=9%  Similarity=0.024  Sum_probs=38.4

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID  188 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  188 (249)
                      ...++++|+|..-..  ...      ..+..+|.++++++.+.. +...+.... ++....  ....+.+|+||.+
T Consensus       131 ~yD~viiD~pp~~~~--~~~------~~l~~aD~viiv~~~~~~-s~~~~~~~~-~~~~~~--~~~~~~~v~N~~~  194 (254)
T 3kjh_A          131 KKEAVVMDMGAGIEH--LTR------GTAKAVDMMIAVIEPNLN-SIKTGLNIE-KLAGDL--GIKKVRYVINKVR  194 (254)
T ss_dssp             CCSEEEEEECTTCTT--CCH------HHHTTCSEEEEEECSSHH-HHHHHHHHH-HHHHHH--TCSCEEEEEEEEC
T ss_pred             CCCEEEEeCCCcccH--HHH------HHHHHCCEEEEecCCCHH-HHHHHHHHH-HHHHHc--CCccEEEEEeCCC
Confidence            456889999874322  111      234678999999988653 344433222 233332  2255789999998

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.17  E-value=0.0018  Score=49.98  Aligned_cols=26  Identities=35%  Similarity=0.408  Sum_probs=21.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+...|+|.|.+||||||+.+.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            45568999999999999999999753

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.16  E-value=0.0028  Score=48.56  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=20.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ....+++.|+||+|||++++++..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999975

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.13  E-value=0.003  Score=47.10  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=21.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      |+..-|++.|++||||||+++.|..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            5667899999999999999999864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.11  E-value=0.003  Score=49.72  Aligned_cols=25  Identities=32%  Similarity=0.503  Sum_probs=21.5

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ....+++.|+||+|||+|++++...
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHH
Confidence            3456999999999999999999863

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.0028  Score=50.22  Aligned_cols=27  Identities=15%  Similarity=0.224  Sum_probs=23.4

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..+...+.|.|+||+|||++++.++..
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            356779999999999999999999753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.11  E-value=0.0031  Score=46.22  Aligned_cols=24  Identities=21%  Similarity=0.165  Sum_probs=20.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...|+|+|++|+|||||...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999999753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.11  E-value=0.0021  Score=58.34  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=20.7

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++|+|+.|||||||++.|++.
T Consensus       701 ivaIiGpNGSGKSTLLklLaGl  722 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGE  722 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.10  E-value=0.003  Score=57.39  Aligned_cols=25  Identities=20%  Similarity=0.437  Sum_probs=22.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRL   46 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~   46 (249)
                      -.++|+|+.|||||||++.|.++.+
T Consensus       462 e~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          462 RRYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            3789999999999999999997654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.08  E-value=0.0033  Score=49.49  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ....+++.|+||+|||++.+++..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            344799999999999999987764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.08  E-value=0.0032  Score=47.84  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...|++.|.+||||||+.+.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999999753

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.07  E-value=0.0035  Score=49.88  Aligned_cols=26  Identities=23%  Similarity=0.361  Sum_probs=22.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+..-+++.|+||+|||+|.+++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHH
Confidence            44568999999999999999999864

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.07  E-value=0.0033  Score=53.04  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -++++|++|+|||||++++.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.06  E-value=0.0032  Score=51.23  Aligned_cols=22  Identities=32%  Similarity=0.370  Sum_probs=20.1

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999753

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.05  E-value=0.0029  Score=50.31  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...+++.|++|+|||||++++..
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999999975

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.02  E-value=0.0049  Score=49.36  Aligned_cols=21  Identities=38%  Similarity=0.607  Sum_probs=19.5

Q ss_pred             EEEeccCCcchHHHHHHHhcC
Q psy871           24 LLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++.||+|+||||+++++.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.98  E-value=0.0041  Score=47.10  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=19.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +--.++|+|++|+|||||+..++.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            344789999999999999877754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.98  E-value=0.0033  Score=50.69  Aligned_cols=26  Identities=27%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+--.+.|+|++|+|||||+..++..
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34457899999999999999999864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.97  E-value=0.0039  Score=49.46  Aligned_cols=22  Identities=36%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999985

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.96  E-value=0.0043  Score=49.37  Aligned_cols=26  Identities=19%  Similarity=0.385  Sum_probs=22.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .....+++.|+||+|||+|.+++...
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999999753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.95  E-value=0.0036  Score=47.14  Aligned_cols=25  Identities=40%  Similarity=0.573  Sum_probs=18.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ++..-|++.|++||||||+++.|..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3556799999999999999999964

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.94  E-value=0.0045  Score=50.00  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=23.2

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ......+++.|++|+|||+|++++...
T Consensus       114 ~~~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          114 RGPPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             GSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            455678999999999999999999753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.94  E-value=0.0062  Score=48.13  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...+++.|++|+|||+|+.++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999965

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.93  E-value=0.0047  Score=50.18  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=21.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .....++|.|++|+|||||++.+..
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999999975

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.90  E-value=0.004  Score=48.19  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=22.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .....+++.|++|+|||+|..++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            44568999999999999999999763

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.89  E-value=0.0041  Score=52.17  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .-++++|+||+|||+|++++.+.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999999863

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.86  E-value=0.0041  Score=48.86  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ....+++.|+||+|||++++++..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999975

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.86  E-value=0.0044  Score=49.47  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=20.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4799999999999999999885

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.85  E-value=0.0022  Score=49.50  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .-+++.|+||+|||+|++++...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            34899999999999999999863

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.82  E-value=0.0055  Score=44.52  Aligned_cols=21  Identities=29%  Similarity=0.177  Sum_probs=17.5

Q ss_pred             ceEEEeccCCcchHHHHHHHh
Q psy871           22 GKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~   42 (249)
                      ..++++|++|+||||++-++.
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            457899999999999986554

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.82  E-value=0.0054  Score=45.70  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +..-|++-|++||||||+++.|..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~   25 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVE   25 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999864

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.19  Score=37.59  Aligned_cols=25  Identities=32%  Similarity=0.211  Sum_probs=19.5

Q ss_pred             ecceEEEe--ccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFL--GLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vv--G~~~~GKStll~~l~~~   44 (249)
                      ++=||+|+  |+++.|||+|+++|.+.
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~   52 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHC   52 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred             CCCceEEEecCcccccHHHHHHHHhcc
Confidence            34456666  99999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	249
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-31
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	5e-21
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-17
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-17
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-16
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-16
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-16
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	6e-16
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-15
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-13
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-13
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-04
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-12
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-05
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	7e-10
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-05
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-09
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-09
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-09
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	5e-09
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-07
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	5e-08
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-07
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-07
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-07
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	0.003
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-07
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	4e-07
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	6e-07
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-04
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	7e-07
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-04
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-06
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-06
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-04
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-06
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-06
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-05
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-05
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	0.001
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-05
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-05
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-05
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	0.002
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	6e-05
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	9e-05
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-04
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-04
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	0.003
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-04
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-04
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-04
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-04
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-04
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	5e-04
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	5e-04
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	0.001
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	0.001
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	0.002
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	0.003
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	0.004
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	0.004
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.004
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	0.004

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score =  111 bits (277), Expect = 5e-31
 Identities = 103/194 (53%), Positives = 127/194 (65%), Gaps = 10/194 (5%)

Query: 56  ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAI 115
           +L +LGL+ K+GKL+FLGLDNAGKTTLLHMLKDDRL Q VPTLHPT              
Sbjct: 3   VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 62

Query: 116 VFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175
                   R  ++     +            IVFLVD +D ER  ESK EL  L+TDE++
Sbjct: 63  DLGGHIQARRVWKNYLPAING----------IVFLVDCADHERLLESKEELDSLMTDETI 112

Query: 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ 235
           A+ P+LILGNKID+  A SEE +R+ FGLYG TTGK +    E++ RP+E+FMCSVL RQ
Sbjct: 113 ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQ 172

Query: 236 GYGDGFRWLANYID 249
           GYG+GFRW+A YID
Sbjct: 173 GYGEGFRWMAQYID 186

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.4 bits (207), Expect = 5e-21
 Identities = 79/181 (43%), Positives = 97/181 (53%), Gaps = 15/181 (8%)

Query: 67  GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           GKLLFLGLDNAGKTTLLHMLK+DRLA   PT HPT          +    F +    + R
Sbjct: 1   GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL--AIGNIKFTTFDLGGHIQAR 58

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
                             + IVFLVD +D ERF+E++ EL  L     L   P +ILGNK
Sbjct: 59  RLWKDY--------FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNK 110

Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
           ID   A SE E+R   GL   T  +          RP+E+FMCSV+MR GY + F+WL+ 
Sbjct: 111 IDAPNAVSEAELRSALGLLNTTGSQ-----RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

Query: 247 Y 247
           Y
Sbjct: 166 Y 166

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 75.8 bits (185), Expect = 1e-17
 Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 22/184 (11%)

Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
           +  ++L LGLDNAGKTTLL  L  + ++   PT     +  +     ++          R
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74

Query: 125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
             +                   +++++D++DR+RFEE+  EL  LL +E L+  PVLI  
Sbjct: 75  PYWRSYFENTDI----------LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124

Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
           NK D   AA   EI +   L+             +  R  ++  CS L  +G  DG  W+
Sbjct: 125 NKQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWV 172

Query: 245 ANYI 248
              +
Sbjct: 173 CKNV 176

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 75.8 bits (185), Expect = 1e-17
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 56  ILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAI 115
           +   L    K  ++L LGLD AGKTT+L+ L+   +    PT+              +  
Sbjct: 7   MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK----NLK 62

Query: 116 VFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL 175
           + + D   +                    ++++F+VD++D++R   +  EL  +L +E L
Sbjct: 63  LNVWDLGGQTSIRPYWRCYYA------DTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL 116

Query: 176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ 235
               +L+  NK D+ GA S  E+ +   L             E+  R   +   S +  +
Sbjct: 117 QDAALLVFANKQDQPGALSASEVSKELNLV------------ELKDRSWSIVASSAIKGE 164

Query: 236 GYGDGFRWLANYI 248
           G  +G  WL + I
Sbjct: 165 GITEGLDWLIDVI 177

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 1e-16
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 22/187 (11%)

Query: 62  LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDT 121
              K  ++L LGLD AGKTT+L+ LK  +    +PT+          +  V   V+ V  
Sbjct: 8   FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV--TYKNVKFNVWDVGG 65

Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
            D+ R                    ++F+VD +DR+R +E++ EL  ++ D  +    +L
Sbjct: 66  QDKIRPLWRHYYTGT--------QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL 117

Query: 182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241
           I  NK D   A    EI++  GL            + +  R   +         G  +G 
Sbjct: 118 IFANKQDLPDAMKPHEIQEKLGL------------TRIRDRNWYVQPSCATSGDGLYEGL 165

Query: 242 RWLANYI 248
            WL +  
Sbjct: 166 TWLTSNY 172

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.9 bits (178), Expect = 3e-16
 Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 62  LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDT 121
           ++  + +LL LG   +GK+T++  ++       V T       ++               
Sbjct: 2   VYRATHRLLLLGAGESGKSTIVKQMRIL---HVVLTSGIFETKFQVDKVNFHMFDVGGQR 58

Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
            +R ++ +  +++  ++   + +S  + + + +   R +E+ +  + +  +  L +  V+
Sbjct: 59  DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118

Query: 182 ILGNKIDKHGA---ASEEEIRQYFGLYG 206
           +  NK D       A + +I  YF  + 
Sbjct: 119 LFLNKQDLLAEKVLAGKSKIEDYFPEFA 146

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 71.6 bits (174), Expect = 3e-16
 Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 22/184 (11%)

Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
           +  +LL LGLDNAGKTT+L     + +    PTL    +  +     ++        S R
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60

Query: 125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
             +                   ++++VD++DR+R ++ + ELQ LL +E LA   +LI  
Sbjct: 61  SYWRNYFESTDG----------LIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA 110

Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
           NK D  GA S   I++   L  +                  +  CS +  +    G  WL
Sbjct: 111 NKQDLPGALSCNAIQEALELDSIR------------SHHWRIQGCSAVTGEDLLPGIDWL 158

Query: 245 ANYI 248
            + I
Sbjct: 159 LDDI 162

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 6e-16
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (6%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWK-DYFPAVDAIVFLVDTSDRER 126
            +LF+GL ++GKT L   L   +      ++  +  ++K +        +  +   +  R
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERF-EESKSELQCLLTDESL--ASCPVLIL 183
           F+               A ++VF+VD++  +R  ++    L  +L D      S  +LI 
Sbjct: 62  FQLLDRFKSS-------ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 114

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
            NK D   A S + I+Q   L         T  +  S         + L ++G    F  
Sbjct: 115 CNKQDIAMAKSAKLIQQQ--LEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQ 172

Query: 244 LANYID 249
           L   ++
Sbjct: 173 LPLKVE 178

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 3e-15
 Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 22/187 (11%)

Query: 62  LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDT 121
              +  K++ +GLDNAGKTT+L+    +     V    PT     +     +    + D 
Sbjct: 11  FNHQEHKVIIVGLDNAGKTTILYQFSMNE----VVHTSPTIGSNVEEIVINNTRFLMWDI 66

Query: 122 SDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL 181
             +E    S +              ++ +VD++DRER   ++ EL  +L  E L    +L
Sbjct: 67  GGQESLRSSWNTYYT------NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 120

Query: 182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF 241
           I  NK D     +  EI Q+  L            + +      +  C  L  +G   G 
Sbjct: 121 IFANKQDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGEGLCQGL 168

Query: 242 RWLANYI 248
            W+ + +
Sbjct: 169 EWMMSRL 175

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 1e-13
 Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 22/181 (12%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           ++L +GLD AGKTT+L+ LK   +   +PT+     V    +  +   V+ V   D+ R 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNISFTVWDVGGQDKIRP 59

Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
                              ++F+VD++DRER  E++ EL  +L ++ L    +L+  NK 
Sbjct: 60  LWRHYFQNT--------QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 111

Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
           D   A +  EI    GL+             +  R   +         G  +G  WL+N 
Sbjct: 112 DLPNAMNAAEITDKLGLH------------SLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159

Query: 248 I 248
           +
Sbjct: 160 L 160

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 4e-13
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 21/184 (11%)

Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
           +  +L  +GL  +GKTT ++++   +       + PT           +  + L D   +
Sbjct: 1   EEMELTLVGLQYSGKTTFVNVIASGQ---FNEDMIPTVGFNMRKITKGNVTIKLWDIGGQ 57

Query: 125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
            RF          ++       IV++VD +D+E+ E SK+EL  LL    L   PVL+LG
Sbjct: 58  PRFRSMWERYCRGVSA------IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 111

Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
           NK D  GA  E+E+ +   L            S +  R I  +  S   +       +WL
Sbjct: 112 NKRDLPGALDEKELIEKMNL------------SAIQDREICCYSISCKEKDNIDITLQWL 159

Query: 245 ANYI 248
             + 
Sbjct: 160 IQHS 163

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLF 71
          +  +L  +GL  +GKTT ++++   +  +  +PT+   +  +     + KL  
Sbjct: 1  EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 53

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 6e-12
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 22/185 (11%)

Query: 64  TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
           T+  ++L LGLD AGKTT+L+ L+   +   +PT+      +         + F V    
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG-----FNVETVTYKNLKFQVWDLG 57

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
                          TD  +     ++VD+ DR+R   SKSEL  +L +E L    +++ 
Sbjct: 58  GLTSIRPYWRCYYSNTDAVI-----YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF 112

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
            NK D   A +  E+    G               +  R  ++F  S     G  +   W
Sbjct: 113 ANKQDMEQAMTSSEMANSLG------------LPALKDRKWQIFKTSATKGTGLDEAMEW 160

Query: 244 LANYI 248
           L   +
Sbjct: 161 LVETL 165

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPI 56
          T+  ++L LGLD AGKTT+L+ L+   +   +PT+   
Sbjct: 3  TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN 40

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (130), Expect = 7e-10
 Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 23/182 (12%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           KLL +G    GKT +L    +D   +  + T+    ++           + + DT+ +ER
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           F    +           A  I+ + D ++ + F+  ++ ++ +    S     +++    
Sbjct: 68  FRTITTAYY------RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121

Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
                    +E  +                       I+    S        + F  LA 
Sbjct: 122 DVNDKRQVSKERGEKL----------------ALDYGIKFMETSAKANINVENAFFTLAR 165

Query: 247 YI 248
            I
Sbjct: 166 DI 167

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 20/130 (15%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTT 81
           KLL +G    GKT +L    +D   +  + T+        +     ++     D AG+  
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 82  LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE 141
                               R +   Y+     I+ + D ++ + F+  ++ ++ +    
Sbjct: 68  F-------------------RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA 108

Query: 142 SLASSIVFLV 151
           S     + L 
Sbjct: 109 SADVEKMILG 118

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (129), Expect = 1e-09
 Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 9/135 (6%)

Query: 69  LLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFE 128
           ++  G  N+GKT+LL +L  D +   V +  P      D       +  +      +   
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSG----VTLVDFPGHVKLRY 61

Query: 129 ESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQ---CLLTDESLASCPVLILGN 185
           +    L+           +V      D ++   +   L     +          +LI  N
Sbjct: 62  KLSDYLKTRAKFVKGLIFMVDSTV--DPKKLTTTAEFLVDILSITESSCENGIDILIACN 119

Query: 186 KIDKHGAASEEEIRQ 200
           K +   A    +I+ 
Sbjct: 120 KSELFTARPPSKIKD 134

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 15/129 (11%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
           K+L LG   +GK+T L  ++        PT         +     K++ +G         
Sbjct: 4   KILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVG--------- 52

Query: 83  LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
                     +       +         + +    L++     R  ES +  + ++ +  
Sbjct: 53  ----GQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 108

Query: 143 LASSIVFLV 151
            ++  + L 
Sbjct: 109 FSNVSIILF 117

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 3e-09
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 5/139 (3%)

Query: 65  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDR 124
           +  KLL LG   +GK+T++  +K                 +                S+R
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKII----HEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56

Query: 125 ERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
           +++      +  ++   +L+   + L +  +  R  ES      +  ++      +++  
Sbjct: 57  KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116

Query: 185 N-KIDKHGAASEEEIRQYF 202
           N K        +  +   +
Sbjct: 117 NKKDLFEEKIKKSPLTICY 135

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (123), Expect = 5e-09
 Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 28/184 (15%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           K+L +G    GK+ LL    +D+     + T+    ++           + + DT+ +ER
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 127 FEESKSELQCLLTDESL--ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
           F          +T      A  I+ + D +D   F   K   + +    +  +  +L+  
Sbjct: 64  FRT--------ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 115

Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
               +    + ++        G                 I     S        + F  L
Sbjct: 116 KSDMETRVVTADQGEALAKELG-----------------IPFIESSAKNDDNVNEIFFTL 158

Query: 245 ANYI 248
           A  I
Sbjct: 159 AKLI 162

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 20/108 (18%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTT 81
           K+L +G    GK+ LL    +D+     + T+        +     K+     D AG+  
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 82  LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE 129
                               R +   Y+     I+ + D +D   F  
Sbjct: 64  F-------------------RTITTAYYRGAMGIILVYDITDERTFTN 92

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 5e-08
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 14/132 (10%)

Query: 20  KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK 79
           +  KLL LG   +GK+T +  ++       VPT   I     L +   +++ +G      
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVG------ 53

Query: 80  TTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLT 139
                        +                   +    LV++ +  R EESK+  + ++T
Sbjct: 54  -------GQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 106

Query: 140 DESLASSIVFLV 151
                +S V L 
Sbjct: 107 YPWFQNSSVILF 118

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 13/139 (9%)

Query: 68  KLLFLGLDNAGKTTLLHML----KDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
            +   G   +GK++ ++ L     ++  A     +  T        P     V   D   
Sbjct: 58  NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPG 116

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLIL 183
                         L          F++ ++   RF+++  ++   ++           +
Sbjct: 117 IGSTNFPPDT---YLEKMKFYEYDFFIIISAT--RFKKNDIDIAKAISMM---KKEFYFV 168

Query: 184 GNKIDKHGAASEEEIRQYF 202
             K+D       +   Q F
Sbjct: 169 RTKVDSDITNEADGEPQTF 187

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 26/184 (14%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLV--DTSDRE 125
           K++ +G    GKT LL   KD                           V L   DT+ +E
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 126 RFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGN 185
           RF      +      ++ A  +++  D +++  F+  ++ L  +          +L+   
Sbjct: 68  RF----RSVTHAYYRDAHALLLLY--DVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121

Query: 186 KID-KHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
                      E+  +    YG                 +     S          F  +
Sbjct: 122 VDSAHERVVKREDGEKLAKEYG-----------------LPFMETSAKTGLNVDLAFTAI 164

Query: 245 ANYI 248
           A  +
Sbjct: 165 AKEL 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 23/182 (12%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDY-FPAVDAIVFLVDTSDRER 126
           K+L +G    GK++LL    DD     +          K        A + + DT+ +ER
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           F      L       +    ++ + D + R+ F +  + L  L T  +      +++GNK
Sbjct: 69  F----RTLTPSYYRGAQG--VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK 122

Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
           IDK     +      F                     +     S     G    F  L  
Sbjct: 123 IDKENREVDRNEGLKF----------------ARKHSMLFIEASAKTCDGVQCAFEELVE 166

Query: 247 YI 248
            I
Sbjct: 167 KI 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 20/140 (14%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTT 81
           K+L +G    GK++LL    DD    +   T+        +     K      D AG+  
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 82  LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE 141
                               R +   Y+     ++ + D + R+ F +  + L  L T  
Sbjct: 69  F-------------------RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC 109

Query: 142 SLASSIVFLVDTSDRERFEE 161
           +    +  LV     +   E
Sbjct: 110 TRNDIVNMLVGNKIDKENRE 129

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 23/182 (12%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDY-FPAVDAIVFLVDTSDRER 126
           K++ +G    GK+ LL     +       +        +            + DT+ +ER
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           +      +       ++ + +V+  D +    +E  +  L+ L  D + ++  ++++GNK
Sbjct: 66  Y----RRITSAYYRGAVGALLVY--DIAKHLTYENVERWLKELR-DHADSNIVIMLVGNK 118

Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
            D     +                      +      +     S L      + F+ +  
Sbjct: 119 SDLRHLRAVPTDEAR---------------AFAEKNNLSFIETSALDSTNVEEAFKNILT 163

Query: 247 YI 248
            I
Sbjct: 164 EI 165

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 4e-07
 Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 25/184 (13%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           K++ LG    GK+ L            +    PT   +      VD+   +++  D    
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTG---TFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61

Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
           E+  S     + +       + +    +++ F++ K     ++  +     PV+++GNK+
Sbjct: 62  EQFASMRDLYIKNGQ---GFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKV 118

Query: 188 D--KHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
           D       S  E R     +G                       S   +    + F  + 
Sbjct: 119 DLESEREVSSSEGRALAEEWG-----------------CPFMETSAKSKTMVDELFAEIV 161

Query: 246 NYID 249
             ++
Sbjct: 162 RQMN 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 6e-07
 Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 27/184 (14%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVF-LVDTSDRER 126
           K + +G    GK+ LLH   + +     P         +    +   I   + DT+ +ER
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           F      +         A+  + + D + R  +    S L     + +  +  ++++GNK
Sbjct: 66  F----RAVTRSYYRG--AAGALMVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIILIGNK 118

Query: 187 ID--KHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
            D       + EE +Q+    G                 +     S    +   D F   
Sbjct: 119 ADLEAQRDVTYEEAKQFAEENG-----------------LLFLEASAKTGENVEDAFLEA 161

Query: 245 ANYI 248
           A  I
Sbjct: 162 AKKI 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 18/143 (12%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
           K + +G    GK+ LLH   + +     P    +     +   SG+ +        K  +
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI--------KLQI 57

Query: 83  LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
                 +R           R V + Y+      + + D + R  +    S L       +
Sbjct: 58  WDTAGQERF----------RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 107

Query: 143 LASSIVFLVDTSDRERFEESKSE 165
             + I+ + + +D E   +   E
Sbjct: 108 PNTVIILIGNKADLEAQRDVTYE 130

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.6 bits (107), Expect = 7e-07
 Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVF-LVDTSDRER 126
           K+L +G  + GKT+ L    DD       +        K  +     I   + DT+ +ER
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 127 FEESKSELQCLLTDESL--ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
           +          +T      A   + + D ++ E F   +      +   S  +  VL++G
Sbjct: 67  YRT--------ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ-IKTYSWDNAQVLLVG 117

Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
           NK D          R                         E F  S          F  L
Sbjct: 118 NKCDMEDERVVSSERGR---------------QLADHLGFEFFEASAKDNINVKQTFERL 162

Query: 245 ANYI 248
            + I
Sbjct: 163 VDVI 166

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 24/117 (20%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQ---PVPTLHPILGYLGLWTKSGKLLFLGLDNAGK 79
           K+L +G  + GKT+ L    DD           +   +  +    K  KL     D AG+
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI--WDTAGQ 64

Query: 80  TTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQC 136
                                 R +   Y+      + + D ++ E F   +     
Sbjct: 65  ERY-------------------RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ 102

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 26/183 (14%), Positives = 54/183 (29%), Gaps = 25/183 (13%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           K++ +G    GK+ L      D   +            K      +  + ++DT+ +E +
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK- 186
                               + +   ++ E F  +    + +L  +   + P L++GNK 
Sbjct: 66  A------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119

Query: 187 -IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
            ++     S EE +     +                  +     S   R      F  L 
Sbjct: 120 DLEDKRQVSVEEAKNRADQWN-----------------VNYVETSAKTRANVDKVFFDLM 162

Query: 246 NYI 248
             I
Sbjct: 163 REI 165

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 23/182 (12%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           K L +G    GK+ LLH   + +       T+                 + + DT+ +ER
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           F                A+  + + D + RE +    + L       S  +  +++ GNK
Sbjct: 67  FRSVTRSYYRG------AAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNK 119

Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
            D         +                         +     S L  +   + F   A 
Sbjct: 120 KDLDADREVTFLEAS---------------RFAQENELMFLETSALTGENVEEAFVQCAR 164

Query: 247 YI 248
            I
Sbjct: 165 KI 166

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 20/108 (18%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGL-DNAGKTT 81
           K L +G    GK+ LLH   + +          +     +    GK + L + D AG+  
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 82  LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE 129
                               R V + Y+      + + D + RE +  
Sbjct: 67  F-------------------RSVTRSYYRGAAGALLVYDITSRETYNA 95

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 21/183 (11%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           K++ LG    GK++L++    ++   Q   T+                 + + DT+ +ER
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           F   +S                 + D+   +     K E       +   S P +ILGNK
Sbjct: 68  F---RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 124

Query: 187 IDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
           ID      S EE + +    G                    F  S          F    
Sbjct: 125 IDISERQVSTEEAQAWCRDNGD----------------YPYFETSAKDATNVAAAFEEAV 168

Query: 246 NYI 248
             +
Sbjct: 169 RRV 171

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 9/181 (4%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           K + +G    GKT LL     +                          + L DT+ +E +
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66

Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
           +      +            +          FE  +++    +      + P++++G K+
Sbjct: 67  D------RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKL 119

Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
           D        E  +   L  +T  +      E+    ++   CS L ++G    F      
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI--GAVKYLECSALTQRGLKTVFDEAIRA 177

Query: 248 I 248
           +
Sbjct: 178 V 178

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 11/179 (6%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           K + +G    GKT LL     ++  ++ VPT+     V          +    DT+ +E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL-FDTAGQED 63

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           ++                   +          FE  K E             P L++G +
Sbjct: 64  YDR------LRPLSYPQTDVFLVCFSVVSPSSFENVK-EKWVPEITHHCPKTPFLLVGTQ 116

Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
           ID     S  E         +T         ++         CS L ++G  + F    
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKY--VECSALTQKGLKNVFDEAI 173

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 27/182 (14%), Positives = 62/182 (34%), Gaps = 23/182 (12%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPA-VDAIVFLVDTSDRER 126
           K++ LG    GKT+L+    +++      T      + K          + + DT+ +ER
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           F      L  +   +S  + +V+  D +D + F++ K+ ++ L        C  ++    
Sbjct: 65  F----HALGPIYYRDSNGAILVY--DITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 118

Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
             +       +  + +                      + +  S    +G  + F  L  
Sbjct: 119 DLEKERHVSIQEAESY----------------AESVGAKHYHTSAKQNKGIEELFLDLCK 162

Query: 247 YI 248
            +
Sbjct: 163 RM 164

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 18/114 (15%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
           K++ LG    GKT+L+    +++      T              GK             +
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK------------RV 52

Query: 83  LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQC 136
              + D               +   Y+   +  + + D +D + F++ K+ ++ 
Sbjct: 53  NLAIWDT------AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE 100

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 22/181 (12%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           KL+ +G    GK+ L   L  +                +        ++ ++DT+ +E +
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
              + +              + +   ++ + FE+     + +   +     P++++GNK 
Sbjct: 65  SAMRDQYMRTGE------GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 118

Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
           D      E    Q                       I     S   RQG  D F  L   
Sbjct: 119 DLAARTVESRQAQDL----------------ARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

Query: 248 I 248
           I
Sbjct: 163 I 163

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 20/115 (17%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTT 81
           KLL +G    GK+ LL    DD      + T+        +      +     D AG+  
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67

Query: 82  LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQC 136
                               R +   Y+     I+ + D +D+E F   K  LQ 
Sbjct: 68  F-------------------RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE 103

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           K++ +G  N GKT L +     R   +   T+    R            + L DT+ +ER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           F +S  +         +     F+ D ++   F    + ++           P +++GNK
Sbjct: 64  FRKSMVQHYYRNVHAVV-----FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNK 118

Query: 187 IDKH 190
            D  
Sbjct: 119 CDLR 122

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 23 KLLFLGLDNAGKTTLLHMLKDDR 45
          K++ +G  N GKT L +     R
Sbjct: 4  KIIVIGDSNVGKTCLTYRFCAGR 26

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 31/182 (17%), Positives = 54/182 (29%), Gaps = 16/182 (8%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           K++ LG    GKT+L+H   +D+   Q   T+       +            V  +  + 
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
             +S         D  +    V    + +  +    +  +       S  + P +ILGNK
Sbjct: 64  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETFPFVILGNK 121

Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
           ID   +      +                    S   I LF+ S          F  +A 
Sbjct: 122 IDAEESKKIVSEKSAQ-------------ELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 168

Query: 247 YI 248
             
Sbjct: 169 SA 170

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (91), Expect = 9e-05
 Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 20/182 (10%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           KL+ LG    GK++++     +       PT+       +           + DT+ +ER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           F         L       +    +V    + +           L +++     + ++GNK
Sbjct: 65  FA-------SLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117

Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
           ID      E ++ +                     + +  F  S    +   D F  +  
Sbjct: 118 IDMLQEGGERKVARE------------EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165

Query: 247 YI 248
            I
Sbjct: 166 KI 167

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 27/184 (14%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           KL+FLG  + GKT+L+     D        T+         Y       + L DT+ +ER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           F                    V + D ++   F+++   +  + T+   +   ++++GNK
Sbjct: 62  FRSLIPSYIRDSAA------AVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNK 114

Query: 187 ID--KHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
            D       S EE  +                       +     S          FR +
Sbjct: 115 TDLADKRQVSIEEGERKAKELN-----------------VMFIETSAKAGYNVKQLFRRV 157

Query: 245 ANYI 248
           A  +
Sbjct: 158 AAAL 161

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 40/196 (20%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTL-----HPTRRVWKDYFPAVDAIVFLV-- 119
           KLL LG    GKTT L+   D++   + + T+                       F V  
Sbjct: 7   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66

Query: 120 ---DTSDRERFEESKSELQCLLTDESL--ASSIVFLVDTSDRERFEESKSELQCLLTDES 174
              DT+ +ERF          LT      A   + + D + ++ F   ++ +  L  +  
Sbjct: 67  QLWDTAGQERFRS--------LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 118

Query: 175 LASCPVLILGN--KIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVL 232
             +  ++++GN   +      +E + R+    YG                 I  F  S  
Sbjct: 119 CENPDIVLIGNKADLPDQREVNERQARELADKYG-----------------IPYFETSAA 161

Query: 233 MRQGYGDGFRWLANYI 248
             Q        L + I
Sbjct: 162 TGQNVEKAVETLLDLI 177

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 8/137 (5%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL 82
           KLL LG    GKTT L+   D++      T   I         + +        A K  L
Sbjct: 7   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66

Query: 83  LHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDES 142
                              R +   +F      + + D + ++ F   ++ +  L  +  
Sbjct: 67  QL--------WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 118

Query: 143 LASSIVFLVDTSDRERF 159
             +  + L+        
Sbjct: 119 CENPDIVLIGNKADLPD 135

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 7/121 (5%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           K++ +G    GKT LLH+   D          PT          +D     +   D    
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGS 60

Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
               +           + +++   D S  E  +    + +  + +    +  +L++G K 
Sbjct: 61  PYYDNVRPL---SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKS 116

Query: 188 D 188
           D
Sbjct: 117 D 117

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 9/181 (4%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           K + +G    GKT LL    +D   +                     ++ L DT+ +E +
Sbjct: 11  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70

Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
           +      +       +    +      +   F+  K E    L  E   + P L++G +I
Sbjct: 71  D------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPNVPFLLIGTQI 123

Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
           D                  +   +      E+         CS L ++G    F      
Sbjct: 124 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEI--GACCYVECSALTQKGLKTVFDEAIIA 181

Query: 248 I 248
           I
Sbjct: 182 I 182

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 23/185 (12%), Positives = 53/185 (28%), Gaps = 28/185 (15%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           ++   G    GK++L+            +PT+  T R       ++  +     T   + 
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES-LASCPVLILGN 185
               +  +           + + +   + R+  EE K   + +   +  + S P++++GN
Sbjct: 64  PAMQRLSISK-------GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 116

Query: 186 KI--DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           K            E       +                        S  +     + F+ 
Sbjct: 117 KCDESPSREVQSSEAEALARTWK-----------------CAFMETSAKLNHNVKELFQE 159

Query: 244 LANYI 248
           L N  
Sbjct: 160 LLNLE 164

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 27/184 (14%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           KL+ LG    GK++L+      +       T+                   + DT+ +ER
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 127 FEESKSELQCLLTDESL--ASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILG 184
           +          L       A + + + D ++ E F  +K+ ++ L    S  +  + + G
Sbjct: 68  Y--------HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSG 118

Query: 185 NKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWL 244
           NK D     + +                           +     S        + F  +
Sbjct: 119 NKADLANKRAVDFQEAQS---------------YADDNSLLFMETSAKTSMNVNEIFMAI 163

Query: 245 ANYI 248
           A  +
Sbjct: 164 AKKL 167

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 23/182 (12%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           K++ +G    GKT L+              T+     +           + + DT+ +ER
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
           F       + +      +++ + L      E       E    +   +      +++GNK
Sbjct: 67  F-------RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 119

Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLAN 246
           ID        + R                      + +     S          F  LA 
Sbjct: 120 IDLAERREVSQQRAE---------------EFSEAQDMYYLETSAKESDNVEKLFLDLAC 164

Query: 247 YI 248
            +
Sbjct: 165 RL 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 20/144 (13%)

Query: 23  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTT 81
           K + +G    GK+ LL    D R       T+    G   +     ++     D AG+  
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ-- 62

Query: 82  LLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDE 141
                               R + + Y+      + + D + RE F    S L+      
Sbjct: 63  -----------------ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS 105

Query: 142 SLASSIVFLVDTSDRERFEESKSE 165
           S    I+ + + SD E   + K E
Sbjct: 106 SSNMVIMLIGNKSDLESRRDVKRE 129

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 22/181 (12%), Positives = 46/181 (25%), Gaps = 24/181 (13%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           KL+ +G    GKTT +         +          +  +  P V          +    
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEK-----KYVATLGVEVHPLVFHTNRGPIKFNVWDT 59

Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
              +      L D     +   ++      R                  + P+++ GNK+
Sbjct: 60  AGQEK--FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 117

Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
           D      + +   +                      ++ +  S      +   F WLA  
Sbjct: 118 DIKDRKVKAKSIVFHRKKN-----------------LQYYDISAKSNYNFEKPFLWLARK 160

Query: 248 I 248
           +
Sbjct: 161 L 161

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 21/181 (11%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           KL+ +G    GK+ L                             + A + ++DT+ +E F
Sbjct: 8   KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 67

Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
              + +              + +   +DR+ F E       +L  +     PV+++GNK 
Sbjct: 68  GAMREQYMR------AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKA 121

Query: 188 DKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY 247
           D                               +   +  F  S  +R    + F  L   
Sbjct: 122 DLESQRQVPRSEASA---------------FGASHHVAYFEASAKLRLNVDEAFEQLVRA 166

Query: 248 I 248
           +
Sbjct: 167 V 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 25/185 (13%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDR-LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           K++ LG    GKT+L++   + +   Q   T+       +         + + DT+ +ER
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC---PVLIL 183
           F+               A   V + D +    F+   S     L   S       P ++L
Sbjct: 64  FQSLGVAFYR------GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 117

Query: 184 GNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW 243
           GNKID        +  Q +                 S   I  F  S          F+ 
Sbjct: 118 GNKIDLENRQVATKRAQAW---------------CYSKNNIPYFETSAKEAINVEQAFQT 162

Query: 244 LANYI 248
           +A   
Sbjct: 163 IARNA 167

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 11/179 (6%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRL-AQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER 126
           KL+ +G    GKT LL +   D+     VPT+        +       +         + 
Sbjct: 4   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 63

Query: 127 FEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK 186
                             + ++ +  + D     E+  E           + P++++GNK
Sbjct: 64  DRLRPLSYPD--------TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 115

Query: 187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA 245
            D                  +   +     + +         CS   + G  + F    
Sbjct: 116 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI--GAFGYMECSAKTKDGVREVFEMAT 172

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 6/121 (4%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERF 127
           KL+ +G    GK+ L            VP   PT          +D    ++D  D    
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIF---VPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ 62

Query: 128 EESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI 187
           EE  +  +            + +   +D+  FE      Q +L  +   S P++++ NK+
Sbjct: 63  EEFSAMREQ---YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 119

Query: 188 D 188
           D
Sbjct: 120 D 120

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 19 TKSGKLLFLGLDNAGKTTLLHMLKDDR 45
          +KS K+  LG  + GK++L     + +
Sbjct: 2  SKSRKIAILGYRSVGKSSLTIQFVEGQ 28

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 64 TKSGKLLFLGLDNAGKTTLLHMLKDDR 90
          +KS K+  LG  + GK++L     + +
Sbjct: 2  SKSRKIAILGYRSVGKSSLTIQFVEGQ 28

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 10/127 (7%), Positives = 38/127 (29%), Gaps = 6/127 (4%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLA----QPVPTLHPTRRVWKDYFPAVDAIVFLVDTSD 123
            +L +G    GK++ ++ +  +R+            P           ++ I        
Sbjct: 34  TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 93

Query: 124 RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL-TDESLASCPVLI 182
               + + + ++  L D+++   ++++            K   + +  +         ++
Sbjct: 94  GYINDMALNIIKSFLLDKTI-DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIV 152

Query: 183 LGNKIDK 189
                  
Sbjct: 153 ALTHAQF 159

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 8/42 (19%), Positives = 11/42 (26%)

Query: 68  KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYF 109
           K+L LG    GK+ L  +               T        
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVD 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.96
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.96
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.96
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.96
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.95
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.95
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.94
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.9
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.89
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.89
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.89
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.87
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.86
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.84
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.83
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.83
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.79
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.78
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.74
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.74
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.73
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.73
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.71
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.66
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.62
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.61
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.56
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.46
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.45
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.44
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.42
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.4
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.29
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.18
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.85
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.7
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.69
d1okkd2	207	GTPase domain of the signal recognition particle r	98.62
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.58
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.55
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.54
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.54
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.49
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.43
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.29
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.29
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.22
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.93
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.87
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.85
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.78
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.77
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.69
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.68
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.66
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.65
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.59
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.58
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.58
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.57
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.55
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.54
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.53
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.53
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.53
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.52
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.5
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.5
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.5
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.49
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.48
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.48
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.47
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.47
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.46
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.46
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.46
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.45
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.45
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.45
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.45
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.43
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.43
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.43
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.42
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.41
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.41
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.41
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.4
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.4
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.38
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.38
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.37
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.37
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.35
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.35
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.35
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.35
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.32
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.31
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.31
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.3
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.28
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.27
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.26
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.23
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.2
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.1
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.08
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.07
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.02
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.02
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.02
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.96
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.95
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.94
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.91
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.88
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.85
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.82
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.82
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.82
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.81
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.76
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.76
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.74
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.72
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.7
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.66
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.63
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.63
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.61
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.53
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.52
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.47
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.45
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.43
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.38
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.36
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.35
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.34
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.28
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.15
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.05
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.04
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.0
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.93
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.92
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.92
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.9
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.83
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.79
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.79
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.74
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.73
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.72
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.65
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.64
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.6
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.6
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.52
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.5
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.48
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.39
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.37
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.36
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.32
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.29
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.17
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.1
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.1
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.04
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.02
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.0
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.83
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.76
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.71
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.62
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.59
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.5
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.48
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.45
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.43
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.42
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.34
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.29
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.2
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.19
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.16
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	94.12
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.08
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.03
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.0
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.97
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.84
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.83
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.81
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.8
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.78
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.71
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.65
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.64
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.61
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.53
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.48
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.47
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.3
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.25
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.21
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.18
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.16
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.16
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.04
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.01
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.97
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	92.96
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.92
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.91
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.9
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.79
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.73
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.67
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.62
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.49
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.49
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.48
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.47
d1nrjb_	209	Signal recognition particle receptor beta-subunit	92.45
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.28
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.15
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.15
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.11
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.08
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.03
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.0
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.99
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.99
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	91.94
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.48
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.35
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.33
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.3
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	91.28
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	91.2
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.17
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	91.11
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	91.1
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	90.98
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.84
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.83
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.73
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.68
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	90.46
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	90.3
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	89.96
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	89.21
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	89.13
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.97
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	88.93
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	88.83
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.79
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.33
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.3
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	86.82
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.73
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	86.51
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.35
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	86.29
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	85.79
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.72
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	85.38
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.33
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	84.94
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.8
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.46
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	83.91
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	83.74
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	83.62
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.18
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.18
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	83.15
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	83.05
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	82.08
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	81.34
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	81.07
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	80.75
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	80.25

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=2.6e-32  Score=200.94  Aligned_cols=176  Identities=26%  Similarity=0.406  Sum_probs=139.9

Q ss_pred             HHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHH
Q psy871            6 DWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHM   85 (249)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~   85 (249)
                      +.|...++++....++.||+++|++|||||||+++|....+....||.+......                         
T Consensus         2 ~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~-------------------------   56 (182)
T d1moza_           2 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL-------------------------   56 (182)
T ss_dssp             HHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEE-------------------------
T ss_pred             hhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEE-------------------------
Confidence            4688889999899999999999999999999999998776655445544332222                         


Q ss_pred             HhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHH
Q psy871           86 LKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSE  165 (249)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~  165 (249)
                                              ...+..+.+||++|++.+.....      .++..++++++|+|+++..++.....+
T Consensus        57 ------------------------~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~~~ii~v~d~~d~~s~~~~~~~  106 (182)
T d1moza_          57 ------------------------SYKNLKLNVWDLGGQTSIRPYWR------CYYADTAAVIFVVDSTDKDRMSTASKE  106 (182)
T ss_dssp             ------------------------EETTEEEEEEEEC----CCTTGG------GTTTTEEEEEEEEETTCTTTHHHHHHH
T ss_pred             ------------------------eeCCEEEEEEecccccccchhHH------hhhccceeEEEEeeecccccchhHHHH
Confidence                                    12245689999999998888777      777899999999999999999988888


Q ss_pred             HHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871          166 LQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA  245 (249)
Q Consensus       166 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  245 (249)
                      +.+.+......+.|+++|+||+|+.+....+++.+.+....            .....+++++|||++|+|+++++++|.
T Consensus       107 l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~e~SA~~g~gv~e~~~~l~  174 (182)
T d1moza_         107 LHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE------------LKDRSWSIVASSAIKGEGITEGLDWLI  174 (182)
T ss_dssp             HHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTT------------CCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred             HHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHH------------HhhCCCEEEEEECCCCCCHHHHHHHHH
Confidence            88887776667899999999999988778888877665332            223458899999999999999999998


Q ss_pred             hhc
Q psy871          246 NYI  248 (249)
Q Consensus       246 ~~i  248 (249)
                      +.|
T Consensus       175 ~~i  177 (182)
T d1moza_         175 DVI  177 (182)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.1e-30  Score=189.15  Aligned_cols=162  Identities=29%  Similarity=0.427  Sum_probs=130.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      |++||+++|++|||||||+++|.+..+....||.+.....+                                       
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~---------------------------------------   41 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTL---------------------------------------   41 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEE---------------------------------------
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeec---------------------------------------
Confidence            56799999999999999999999887766666665333322                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                                ...+..+.+||++|++.+.....      ..+..++++++|+|+++..++.....++...+......+.|
T Consensus        42 ----------~~~~~~~~~~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p  105 (165)
T d1ksha_          42 ----------EHRGFKLNIWDVGGQKSLRSYWR------NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT  105 (165)
T ss_dssp             ----------EETTEEEEEEEECCSHHHHTTGG------GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE
T ss_pred             ----------cccccceeeeecCcchhhhhHHH------hhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCc
Confidence                      12345689999999988877776      67788999999999999999988888888887766668899


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+.+....++....+....            .....+++++|||++|+|++++++||.+++
T Consensus       106 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i  162 (165)
T d1ksha_         106 LLIFANKQDLPGALSCNAIQEALELDS------------IRSHHWRIQGCSAVTGEDLLPGIDWLLDDI  162 (165)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEeccccccccCHHHHHHHHHhhh------------hhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            999999999988777777766554322            223457899999999999999999998765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=4.5e-31  Score=193.22  Aligned_cols=166  Identities=30%  Similarity=0.457  Sum_probs=132.0

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      +-+.+++||+++|++|||||||+++|.++.+....|+.+.....+                                   
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i-----------------------------------   55 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSV-----------------------------------   55 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEE-----------------------------------
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEe-----------------------------------
Confidence            455788999999999999999999998776654333333221111                                   


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                                    ...+..+.+||++|++.+...+.      .++..+|++++|+|++++.++.....++.++......
T Consensus        56 --------------~~~~~~~~i~d~~g~~~~~~~~~------~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~  115 (176)
T d1fzqa_          56 --------------QSQGFKLNVWDIGGQRKIRPYWR------SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL  115 (176)
T ss_dssp             --------------EETTEEEEEEECSSCGGGHHHHH------HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGG
T ss_pred             --------------ccCCeeEeEeeccccccchhHHH------HHhhccceeEEeeccccccchhhhhhhhhhhhhhhcc
Confidence                          22345789999999998887777      6778999999999999999999988888888776666


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          176 ASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .++|+++|+||+|+.++....++.+.+....            ...+.+++++|||++|+|++++|+||.++|
T Consensus       116 ~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         116 SCVPVLIFANKQDLLTAAPASEIAEGLNLHT------------IRDRVWQIQSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             TTCCEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             CCCeEEEEEEeccccccccHHHHHHHHHHHH------------HHhcCCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence            7899999999999998777777776665332            223458899999999999999999999875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.7e-31  Score=189.89  Aligned_cols=158  Identities=16%  Similarity=0.174  Sum_probs=115.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      +||+++|++|||||||++++.+..+....|+.+.....                                          
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~------------------------------------------   39 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR------------------------------------------   39 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEE------------------------------------------
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecc------------------------------------------
Confidence            58999999999999999999887655433332211100                                          


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                          ...+.+....+.+||++|++.+...+.      .++..+|++++|+|++++.++..+..|+.++........+|++
T Consensus        40 ----~i~~~~~~~~l~i~D~~g~e~~~~~~~------~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~pii  109 (168)
T d2gjsa1          40 ----SIVVDGEEASLMVYDIWEQDGGRWLPG------HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII  109 (168)
T ss_dssp             ----EEEETTEEEEEEEEECC-------CHH------HHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEE
T ss_pred             ----eeeccccccceeeeecccccccceecc------cchhhhhhhceeccccccccccccccccchhhcccccccceEE
Confidence                011233456788999999999988887      6788999999999999999999999888888766555678999


Q ss_pred             EEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          182 ILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       182 vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+||+|+.+  ++...+..++.+..+                 +++++|||++|.|++++|+.|.+.|
T Consensus       110 lvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sak~~~~v~~~f~~l~~~i  161 (168)
T d2gjsa1         110 LVGNKSDLVRSREVSVDEGRACAVVFD-----------------CKFIETSAALHHNVQALFEGVVRQI  161 (168)
T ss_dssp             EEEECTTCGGGCCSCHHHHHHHHHHHT-----------------SEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EeecccchhhhcchhHHHHHHHHHhcC-----------------CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            9999999976  456788888888776                 7899999999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-31  Score=190.81  Aligned_cols=162  Identities=16%  Similarity=0.251  Sum_probs=130.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ||++||+++|++|||||||+++++++.+. ...||++.....                                      
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~--------------------------------------   42 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRK--------------------------------------   42 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE--------------------------------------
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeee--------------------------------------
Confidence            68999999999999999999999988765 334444311100                                      


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              .....+....+.+||++|.+.+.....      .++..+|++++|+|++++.++..+..|+..+.......+
T Consensus        43 --------~~~~~~~~~~l~~~d~~g~~~~~~~~~------~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~  108 (167)
T d1kaoa_          43 --------EIEVDSSPSVLEILDTAGTEQFASMRD------LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK  108 (167)
T ss_dssp             --------EEEETTEEEEEEEEECCCTTCCHHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             --------eeecCcceEeeccccCCCccccccchH------HHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCC
Confidence                    111233456788999999998888777      667889999999999999999999988888776555578


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      +|+++|+||+|+.+  ....++...+.+...                 +++++|||++|.|++++|..|.++|+
T Consensus       109 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         109 VPVILVGNKVDLESEREVSSSEGRALAEEWG-----------------CPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEccchhhcccchHHHHHHHHHHcC-----------------CeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            99999999999865  456677777777766                 78999999999999999999998763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=190.04  Aligned_cols=164  Identities=26%  Similarity=0.383  Sum_probs=131.3

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ++++.||+++|++|||||||+++|..+......||.+......                                     
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~-------------------------------------   51 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV-------------------------------------   51 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEE-------------------------------------
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEe-------------------------------------
Confidence            5778999999999999999999998766554333333221111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                                  ......+.+||+||.+.+.....      .++..++++++|+|+++.+++..+..++...+.......
T Consensus        52 ------------~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~  113 (173)
T d1e0sa_          52 ------------TYKNVKFNVWDVGGQDKIRPLWR------HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD  113 (173)
T ss_dssp             ------------EETTEEEEEEEESCCGGGHHHHG------GGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTT
T ss_pred             ------------eccceeeEEecCCCcchhhhHHH------hhhcccceEEEEEecccchhHHHHHHHHHHHhhhccccc
Confidence                        12345688999999998888777      778899999999999999999998888888877666678


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++++||+|+.+.....++...+....            .....+++++|||++|+|++++|+||.+++
T Consensus       114 ~piiiv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         114 AIILIFANKQDLPDAMKPHEIQEKLGLTR------------IRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             CEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             ceeeeeeecccccccccHHHHHHHHHHHH------------HHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            99999999999988778887777655332            223457899999999999999999999875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=4.8e-30  Score=185.54  Aligned_cols=162  Identities=28%  Similarity=0.421  Sum_probs=131.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +++||+++|++|||||||+++|..+++. ...||.+.....+                                      
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~--------------------------------------   42 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI--------------------------------------   42 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE--------------------------------------
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeee--------------------------------------
Confidence            4789999999999999999999988765 3445555333222                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                                 ...+..+.+||++|++.+...+.      .++..++++++|+|+++..++.....++..++......++
T Consensus        43 -----------~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (164)
T d1zd9a1          43 -----------TKGNVTIKLWDIGGQPRFRSMWE------RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI  105 (164)
T ss_dssp             -----------EETTEEEEEEEECCSHHHHTTHH------HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             -----------eeeeEEEEEeecccccccccccc------ccccccchhhcccccccccccchhhhhhhhhhhhhcccCC
Confidence                       12345789999999998888777      6678899999999999999999988888888877777889


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.+....+++.+.+....            .....++++++||++|+|++++|+||.+++
T Consensus       106 pi~lv~nK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         106 PVLVLGNKRDLPGALDEKELIEKMNLSA------------IQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             CEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             cEEEEEeccccchhhhHHHHHHHHHHHH------------HHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            9999999999988777777776665432            223458899999999999999999999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-30  Score=188.53  Aligned_cols=163  Identities=15%  Similarity=0.208  Sum_probs=130.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ||++||+++|.+|||||||+++++.+.+.. +.||++......                                     
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~-------------------------------------   43 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-------------------------------------   43 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-------------------------------------
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccccee-------------------------------------
Confidence            688999999999999999999999887763 344443111110                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               .........+.+||++|++.+...+.      .++..+|++++|+|++++.+|..+..|+..+.+.....+
T Consensus        44 ---------~~~~~~~~~~~~~d~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~  108 (167)
T d1c1ya_          44 ---------VEVDCQQCMLEILDTAGTEQFTAMRD------LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED  108 (167)
T ss_dssp             ---------EESSSCEEEEEEEEECSSCSSTTHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSC
T ss_pred             ---------EEeeeeEEEeccccccCccccccccc------ccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCC
Confidence                     11233456789999999999988887      677899999999999999999999999988877655678


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      .|+++|+||+|+..  ....++.....+...                ..++++|||++|+|++++|++|.+.|.
T Consensus       109 ~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         109 VPMILVGNKCDLEDERVVGKEQGQNLARQWC----------------NCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHTT----------------SCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             CeEEEEEEecCcccccccchhHHHHHHHHhC----------------CCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            99999999999965  455666666666542                278999999999999999999998774

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-30  Score=186.90  Aligned_cols=161  Identities=22%  Similarity=0.216  Sum_probs=131.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+++||+|+|++|+|||||+++|+++.+. .+.||.+......                                     
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~-------------------------------------   44 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-------------------------------------   44 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEE-------------------------------------
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceE-------------------------------------
Confidence            46789999999999999999999987765 3456655321110                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               ..+.+....+.+||++|.+.+.....      ..+..+|++++|+|++++.+|..+..|+.++.......+
T Consensus        45 ---------~~~~~~~~~l~i~d~~g~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~  109 (167)
T d1xtqa1          45 ---------ITVNGQEYHLQLVDTAGQDEYSIFPQ------TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ  109 (167)
T ss_dssp             ---------EEETTEEEEEEEEECCCCCTTCCCCG------GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             ---------EecCcEEEEeeecccccccccccccc------hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccc
Confidence                     01223345688999999998887777      677899999999999999999999988888877666678


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+++|+||+|+..  .++.+++.++.+..+                 +++++|||++|.|++++|+.|.+.+
T Consensus       110 ~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~-----------------~~~~e~Sak~~~~v~~~f~~li~~~  165 (167)
T d1xtqa1         110 IPIMLVGNKKDLHMERVISYEEGKALAESWN-----------------AAFLESSAKENQTAVDVFRRIILEA  165 (167)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cceeeeccccccccccchhHHHHHHHHHHcC-----------------CEEEEEecCCCCCHHHHHHHHHHHh
Confidence            99999999999865  467888888888776                 7899999999999999999998765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.2e-30  Score=185.72  Aligned_cols=161  Identities=19%  Similarity=0.271  Sum_probs=129.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      |+++||+++|++|||||||+++|+++.+.. ..|+.+......                                     
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------   43 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-------------------------------------   43 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-------------------------------------
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-------------------------------------
Confidence            678999999999999999999999887653 333433211111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               ....+....+.+||++|.+.+...+.      ..+..++++++|+|++++.+|..+..|+..+.+.....+
T Consensus        44 ---------~~~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~  108 (166)
T d1ctqa_          44 ---------VVIDGETCLLDILDTAGQEEYSAMRD------QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD  108 (166)
T ss_dssp             ---------EEETTEEEEEEEEEECCCGGGHHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSS
T ss_pred             ---------eeeeceeeeeeeeeccCccccccchh------hhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCC
Confidence                     11123345688999999999887777      667889999999999999999999988888876655567


Q ss_pred             CcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+++|+||+|+.. ....+++.++.+...                 +++++|||++|+|++++|.+|.+.|
T Consensus       109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sak~g~gi~e~f~~i~~~i  163 (166)
T d1ctqa_         109 VPMVLVGNKCDLAARTVESRQAQDLARSYG-----------------IPYIETSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             CCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CeEEEEecccccccccccHHHHHHHHHHhC-----------------CeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            99999999999966 456778888887766                 7899999999999999999998765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.97  E-value=4.3e-30  Score=186.41  Aligned_cols=160  Identities=18%  Similarity=0.202  Sum_probs=127.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +-+||+|+|.+|||||||+++++.+.+. .+.||.+......                                      
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~--------------------------------------   44 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK--------------------------------------   44 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE--------------------------------------
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccc--------------------------------------
Confidence            4579999999999999999999988765 4455554221100                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                              ..+.+....+.+||++|++++.....      ..++.+|++++|+|.+++.++..+..|+.++.+.....+.
T Consensus        45 --------~~~~~~~~~l~i~d~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~  110 (168)
T d1u8za_          45 --------VVLDGEEVQIDILDTAGQEDYAAIRD------NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV  110 (168)
T ss_dssp             --------EEETTEEEEEEEEECCC---CHHHHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             --------cccccccccccccccccccchhhhhh------hcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCC
Confidence                    11233456788999999998887777      6678899999999999999999999898888776556789


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+.+  ....+++.++.+..+                 +++++|||++|.|++++|++|.+.|
T Consensus       111 piiivgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sak~g~gv~e~f~~l~~~i  165 (168)
T d1u8za_         111 PFLLVGNKSDLEDKRQVSVEEAKNRADQWN-----------------VNYVETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             CEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cEEEEeccccccccccccHHHHHHHHHHcC-----------------CeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            9999999999865  467788888888877                 7899999999999999999998865

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.8e-30  Score=184.66  Aligned_cols=162  Identities=19%  Similarity=0.172  Sum_probs=130.1

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +|+++||+|+|.+|+|||||+++|..+++. .+.||.+......                                    
T Consensus         1 ~~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~------------------------------------   44 (167)
T d1z0ja1           1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK------------------------------------   44 (167)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE------------------------------------
T ss_pred             CCceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccc------------------------------------
Confidence            489999999999999999999999988765 3344444322222                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                               ..........+.+||++|++.+.....      .++..++++++|+|++++.+|..+..++..+.. ....
T Consensus        45 ---------~~~~~~~~~~~~i~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~  108 (167)
T d1z0ja1          45 ---------TVQYQNELHKFLIWDTAGLERFRALAP------MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ-HGPP  108 (167)
T ss_dssp             ---------EEEETTEEEEEEEEEECCSGGGGGGTH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-HSCT
T ss_pred             ---------cccccccccceeeeecCCchhhhHHHH------HHHhhccceEEEeeechhhhhhhHHHhhhhhhh-ccCC
Confidence                     111222334577999999999988888      677899999999999999999999888776643 3447


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..|+++|+||+|+.+  ....++..++.+...                 +++++|||++|.|++++|.+|++.|
T Consensus       109 ~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         109 SIVVAIAGNKCDLTDVREVMERDAKDYADSIH-----------------AIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             cceEEEecccchhccccchhHHHHHHHHHHcC-----------------CEEEEEecCCCCCHHHHHHHHHHhC
Confidence            899999999999965  467788888888766                 7899999999999999999999876

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.7e-30  Score=186.31  Aligned_cols=161  Identities=19%  Similarity=0.269  Sum_probs=128.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+.+||+|+|.+|||||||+++++.+.+.. ..||..... ..                                     
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~-------------------------------------   45 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TK-------------------------------------   45 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEE-EE-------------------------------------
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccce-ee-------------------------------------
Confidence            467899999999999999999999877653 233321110 00                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||++|++.+.....      .++..+|++++|+|.+++.+|..+..|+..+.+.....+
T Consensus        46 --------~~~~~~~~~~l~~~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  111 (173)
T d2fn4a1          46 --------ICSVDGIPARLDILDTAGQEEFGAMRE------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD  111 (173)
T ss_dssp             --------EEEETTEEEEEEEEECCCTTTTSCCHH------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC
T ss_pred             --------EeccCCeeeeeeccccccccccccccc------hhhccceeeeeecccccccccchhhhhhHHHHHHhccCC
Confidence                    011233456789999999999888877      667889999999999999999999988888876655678


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+.+  ....++...+.+...                 +++++|||++|.|++++|+.|.+.+
T Consensus       112 ~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sak~g~gv~e~f~~l~~~i  167 (173)
T d2fn4a1         112 FPVVLVGNKADLESQRQVPRSEASAFGASHH-----------------VAYFEASAKLRLNVDEAFEQLVRAV  167 (173)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CceEEEEEeechhhccccchhhhhHHHHhcC-----------------CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            99999999999865  456777888877765                 7899999999999999999999865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8e-30  Score=184.34  Aligned_cols=158  Identities=20%  Similarity=0.227  Sum_probs=127.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .+||+++|++|+|||||+++|+.+.+. ...||++.......                                      
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~--------------------------------------   43 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQ--------------------------------------   43 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEE--------------------------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceee--------------------------------------
Confidence            368999999999999999999987754 44566554333321                                      


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             ....+....+.+||++|++++.....      .+++.++++++|+|++++.++..+..|+.++.+.  ..++|
T Consensus        44 -------~~~~~~~~~~~i~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~  108 (164)
T d1z2aa1          44 -------IQVNDEDVRLMLWDTAGQEEFDAITK------AYYRGAQACVLVFSTTDRESFEAISSWREKVVAE--VGDIP  108 (164)
T ss_dssp             -------EEETTEEEEEEEECCTTGGGTTCCCH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--HCSCC
T ss_pred             -------eeecCceeeeeeeccCCccchhhhhh------hhhccCceEEEEEeccchhhhhhccccccccccc--CCCce
Confidence                   12233445688999999998887777      6678999999999999999999998888887543  25799


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+.+  ....++++++.+..+                 +++++|||++|.|++++|++|++++
T Consensus       109 iilVgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sak~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         109 TALVQNKIDLLDDSCIKNEEAEGLAKRLK-----------------LRFYRTSVKEDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             EEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             EEEeeccCCcccceeeeehhhHHHHHHcC-----------------CEEEEeccCCCcCHHHHHHHHHHHH
Confidence            999999999965  456778888888776                 7899999999999999999998754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.2e-29  Score=182.85  Aligned_cols=161  Identities=19%  Similarity=0.209  Sum_probs=130.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+++||+++|.+|+|||||++++.++.+. ...||.+......                                     
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~-------------------------------------   44 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKH-------------------------------------   44 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEE-------------------------------------
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccc-------------------------------------
Confidence            35789999999999999999999987755 3445443111000                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               .........+.+||++|++.+...+.      .++..+|++++|+|++++.+|..+..|+.++.+......
T Consensus        45 ---------~~~~~~~~~~~i~d~~g~~~~~~~~~------~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~  109 (169)
T d1x1ra1          45 ---------TEIDNQWAILDVLDTAGQEEFSAMRE------QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES  109 (169)
T ss_dssp             ---------EEETTEEEEEEEEECCSCGGGCSSHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSC
T ss_pred             ---------cccccccccccccccccccccccchh------hhhhhccEEEEecccccchhhhccchhhHHHHhhccccC
Confidence                     11233455688999999999988887      677899999999999999999999999988877666678


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc-chHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ-GYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-gv~~l~~~l~~~i  248 (249)
                      .|+++++||+|+..  ....+++.++++..+                 +++++|||+++. |++++|..|.+.|
T Consensus       110 ~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~-----------------~~~~e~Sak~~~~nV~~~F~~l~~~i  166 (169)
T d1x1ra1         110 FPMILVANKVDLMHLRKVTRDQGKEMATKYN-----------------IPYIETSAKDPPLNVDKTFHDLVRVI  166 (169)
T ss_dssp             CCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-----------------CCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred             ccEEEEecccchhhhceeehhhHHHHHHHcC-----------------CEEEEEcCCCCCcCHHHHHHHHHHHH
Confidence            99999999999876  456788888888877                 789999999875 9999999998865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-29  Score=183.92  Aligned_cols=159  Identities=16%  Similarity=0.232  Sum_probs=125.2

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ++||+++|.+|+|||||+++++++.+. .+.||++......                                       
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~---------------------------------------   42 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV---------------------------------------   42 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE---------------------------------------
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccc---------------------------------------
Confidence            579999999999999999999987765 3455554221111                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc-CCCCC
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE-SLASC  178 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~  178 (249)
                             ....+....+.+||++|.+.+.....      .++..+|++++|+|+++++++..+..|+..+.... ...++
T Consensus        43 -------~~~~~~~~~l~~~d~~g~~~~~~~~~------~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~  109 (171)
T d2erxa1          43 -------ISCDKSICTLQITDTTGSHQFPAMQR------LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESI  109 (171)
T ss_dssp             -------EEETTEEEEEEEEECCSCSSCHHHHH------HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CC
T ss_pred             -------eeeccccceecccccccccccccccc------ccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCC
Confidence                   11223345688999999998888777      66788999999999999999999988887775432 33678


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+..  ....+++.++.+...                 +++++|||++|.|++++|+.|.+.+
T Consensus       110 piilVgnK~Dl~~~~~v~~~e~~~~~~~~~-----------------~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         110 PIMLVGNKCDESPSREVQSSEAEALARTWK-----------------CAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             CEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             cEEEEeecccccccccccHHHHHHHHHHcC-----------------CeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            9999999999854  566788888888776                 7999999999999999999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-29  Score=183.06  Aligned_cols=160  Identities=19%  Similarity=0.251  Sum_probs=125.5

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      +.+||+|+|.+|||||||+++++.+.+. ...||.+.....                                       
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~---------------------------------------   44 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTK---------------------------------------   44 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEE---------------------------------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceee---------------------------------------
Confidence            3479999999999999999999987765 344554311110                                       


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                             ...+.+....+.+||++|.+.+.....      ..+..+|++++|+|.+++.+|..+..|+.++.........
T Consensus        45 -------~~~~~~~~~~~~~~d~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~  111 (171)
T d2erya1          45 -------QCVIDDRAARLDILDTAGQEEFGAMRE------QYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEF  111 (171)
T ss_dssp             -------EEEETTEEEEEEEEECC----CCHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCC
T ss_pred             -------eeeeccccccccccccccccccccccc------ccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCC
Confidence                   011233345688999999998888777      6677899999999999999999999888888776666789


Q ss_pred             cEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++|+||+|+..  ....++..++.+..+                 +++++|||++|.|++++|..|.+.|
T Consensus       112 p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sak~~~~i~e~f~~l~~~i  166 (171)
T d2erya1         112 PMILIGNKADLDHQRQVTQEEGQQLARQLK-----------------VTYMEASAKIRMNVDQAFHELVRVI  166 (171)
T ss_dssp             SEEEEEECTTCTTSCSSCHHHHHHHHHHTT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CEEEEEeccchhhhccchHHHHHHHHHHcC-----------------CEEEEEcCCCCcCHHHHHHHHHHHH
Confidence            9999999999865  467788888888776                 7999999999999999999998865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-29  Score=180.45  Aligned_cols=158  Identities=21%  Similarity=0.203  Sum_probs=127.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|.+|||||||+++|+++++. ...|+.+......                                        
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~----------------------------------------   40 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK----------------------------------------   40 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE----------------------------------------
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccce----------------------------------------
Confidence            48999999999999999999987765 3344443222222                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           .....+....+.+||++|++.+...+.      .++..++++++|+|.+++.++..+..++.++... ...+.|+
T Consensus        41 -----~~~~~~~~~~~~i~d~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~-~~~~~~i  108 (164)
T d1yzqa1          41 -----TMYLEDRTIRLQLWDTAGQERFRSLIP------SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVII  108 (164)
T ss_dssp             -----EEECSSCEEEEEEEEECCSGGGGGGHH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEE
T ss_pred             -----eeccCCCceeeeecccCCcchhccchH------HHhhccceEEEeeccccccchhhhHhhHHHHHHh-cCCCceE
Confidence                 122334456788999999999988887      7788999999999999999999999888887543 3368999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+.+  ....++..++.+...                 +++++|||++|+|++++|++|++.|
T Consensus       109 ilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         109 MLVGNKTDLADKRQVSIEEGERKAKELN-----------------VMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             EEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             EEEecccchhhhhhhhHHHHHHHHHHcC-----------------CEEEEecCCCCcCHHHHHHHHHHhh
Confidence            99999999865  566778888888766                 7899999999999999999999876

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.6e-30  Score=186.17  Aligned_cols=158  Identities=18%  Similarity=0.211  Sum_probs=120.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .+||+++|++|+|||||+++++.+.+. ...||++......                                       
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~---------------------------------------   43 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL---------------------------------------   43 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEE---------------------------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccc---------------------------------------
Confidence            469999999999999999999887655 3344444222211                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            .....+....+.+||++|++.+.....      .++..+|++++|+|++++.+|..+..|+..+.+..  .++|
T Consensus        44 ------~~~~~~~~~~l~i~D~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~--~~~p  109 (170)
T d1i2ma_          44 ------VFHTNRGPIKFNVWDTAGQEKFGGLRD------GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIP  109 (170)
T ss_dssp             ------EECBTTCCEEEEEEECTTHHHHSSCGG------GGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH--CSCC
T ss_pred             ------ccccccccccccccccccccccceecc------hhcccccchhhccccccccccchhHHHHHHHhhcc--CCCc
Confidence                  111234456789999999998888877      77889999999999999999999998888876542  6899


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+......++.....+...                 +++++|||++|.|++++|.+|.+.|
T Consensus       110 iilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~e~Sak~~~~v~e~f~~l~~~l  161 (170)
T d1i2ma_         110 IVLCGNKVDIKDRKVKAKSIVFHRKKN-----------------LQYYDISAKSNYNFEKPFLWLARKL  161 (170)
T ss_dssp             EEEEEECCCCSCSCCTTTSHHHHSSCS-----------------SEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhhhhHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999977544444444444433                 7899999999999999999998764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.96  E-value=1.8e-28  Score=180.49  Aligned_cols=184  Identities=57%  Similarity=0.896  Sum_probs=138.7

Q ss_pred             hhcccccceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCC
Q psy871           11 VLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        11 ~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      ++.|+++.+++.||+++|++|||||||+++|+++.+....|+.+.....+                              
T Consensus         3 ~~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~------------------------------   52 (186)
T d1f6ba_           3 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL------------------------------   52 (186)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEE------------------------------
T ss_pred             hHHhccccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEE------------------------------
Confidence            57899999999999999999999999999998877665455444333332                              


Q ss_pred             cccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHH
Q psy871           91 LAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL  170 (249)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~  170 (249)
                                         ...+..+..+|+.+...+.....      ..+...+.+++++|.++...+......+....
T Consensus        53 -------------------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~  107 (186)
T d1f6ba_          53 -------------------TIAGMTFTTFDLGGHIQARRVWK------NYLPAINGIVFLVDCADHERLLESKEELDSLM  107 (186)
T ss_dssp             -------------------EETTEEEEEEEECC----CCGGG------GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred             -------------------EecccccccccccchhhhhhHHh------hhhcccceeeeeeeccCccchHHHHHHHHHhh
Confidence                               11234567788888777766665      66788999999999999988887766666666


Q ss_pred             hccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          171 TDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       171 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      ......+.|+++++||+|+.......++.+.+...................+.+++++|||++|+|++|+|+||.++||
T Consensus       108 ~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i~  186 (186)
T d1f6ba_         108 TDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID  186 (186)
T ss_dssp             TCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred             cccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhhC
Confidence            6666678999999999999988888888888876655555444445555556789999999999999999999999986

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=181.63  Aligned_cols=161  Identities=20%  Similarity=0.240  Sum_probs=123.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ...+||+|+|.+|||||||+++|+.+.+. ...||++......                                     
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~-------------------------------------   49 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-------------------------------------   49 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEE-------------------------------------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEE-------------------------------------
Confidence            55679999999999999999999988765 4445553211111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               ....+....+.+||++|++.+...+.      .++..+|++++|+|++++++|.....++...++.. ..+
T Consensus        50 ---------~~~~~~~~~l~i~D~~g~e~~~~~~~------~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~  113 (185)
T d2atxa1          50 ---------VTVGGKQYLLGLYDTAGQEDYDRLRP------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN  113 (185)
T ss_dssp             ---------EESSSCEEEEEEECCCCSSSSTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STT
T ss_pred             ---------EeeCCceEEeecccccccchhhhhhh------hcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCC
Confidence                     11223345688999999999988888      77889999999999999999988766666665543 468


Q ss_pred             CcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871          178 CPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW  243 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  243 (249)
                      .|+++|+||+|+.+              ..+.++..++.+..+                ..+|++|||++|.|++++|+.
T Consensus       114 ~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~----------------~~~~~E~SAk~~~gv~e~F~~  177 (185)
T d2atxa1         114 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG----------------ACCYVECSALTQKGLKTVFDE  177 (185)
T ss_dssp             CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT----------------CSCEEECCTTTCTTHHHHHHH
T ss_pred             CCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcC----------------CCEEEEecCCCCcCHHHHHHH
Confidence            99999999999875              345566666655543                268999999999999999999


Q ss_pred             Hhhhc
Q psy871          244 LANYI  248 (249)
Q Consensus       244 l~~~i  248 (249)
                      +.+.+
T Consensus       178 li~~i  182 (185)
T d2atxa1         178 AIIAI  182 (185)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.2e-28  Score=178.87  Aligned_cols=158  Identities=25%  Similarity=0.276  Sum_probs=124.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|+|||||+++|.++++. ...|+.+......                                        
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------   45 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK----------------------------------------   45 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE----------------------------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeE----------------------------------------
Confidence            58999999999999999999987755 3344443222221                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ..........+.+||+||++++...+.      .+++.+|++++|+|+++++++..+..++..... ......|+
T Consensus        46 -----~~~~~~~~~~l~~wDt~G~e~~~~~~~------~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i  113 (169)
T d3raba_          46 -----TIYRNDKRIKLQIWDTAGQERYRTITT------AYYRGAMGFILMYDITNEESFNAVQDWSTQIKT-YSWDNAQV  113 (169)
T ss_dssp             -----EEEETTEEEEEEEEEECCSGGGHHHHH------TTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHH-HCCSCCEE
T ss_pred             -----EEEeecceEEEEEEECCCchhhHHHHH------HHHhcCCEEEEEEECccchhhhhhhhhhhhhhc-ccCCcceE
Confidence                 011122335688999999999988887      678899999999999999999988877766543 34467899


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++++||+|+.+  ....++..++.+..+                 +++++|||++|.|++++|++|.+.|
T Consensus       114 ivv~nK~D~~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sak~g~gv~e~f~~l~~~i  166 (169)
T d3raba_         114 LLVGNKCDMEDERVVSSERGRQLADHLG-----------------FEFFEASAKDNINVKQTFERLVDVI  166 (169)
T ss_dssp             EEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeecccccccccchhhhHHHHHHcC-----------------CEEEEecCCCCcCHHHHHHHHHHHH
Confidence            99999999876  456778888777766                 7899999999999999999998864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.4e-29  Score=179.88  Aligned_cols=158  Identities=17%  Similarity=0.147  Sum_probs=125.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||+++|..+.+. ...++.+......                                        
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~----------------------------------------   45 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK----------------------------------------   45 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEE----------------------------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEE----------------------------------------
Confidence            69999999999999999999987765 2333333222221                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ...+.+....+.+|||+|++.+...+.      .+++.++++++|+|.+++.++..+..++..+.+. .....|+
T Consensus        46 -----~~~~~~~~~~l~i~Dt~G~e~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~  113 (171)
T d2ew1a1          46 -----TVEINGEKVKLQIWDTAGQERFRSITQ------SYYRSANALILTYDITCEESFRCLPEWLREIEQY-ASNKVIT  113 (171)
T ss_dssp             -----EEEETTEEEEEEEEEECCSGGGHHHHG------GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred             -----EEEECCEEEEEEEEECCCchhhHHHHH------HHHhccceEEEeeecccchhhhhhhhhhhhhccc-ccccccE
Confidence                 011223345688999999999988888      7788999999999999999999988888776543 3367899


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+.+  ....+++.++.+...                 +++++|||++|+|++++|.+|++.+
T Consensus       114 ilvgnK~D~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~SAktg~gV~e~f~~l~~~l  166 (171)
T d2ew1a1         114 VLVGNKIDLAERREVSQQRAEEFSEAQD-----------------MYYLETSAKESDNVEKLFLDLACRL  166 (171)
T ss_dssp             EEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeecccccccchhhhHHHHHHHhCC-----------------CEEEEEccCCCCCHHHHHHHHHHHH
Confidence            99999999865  556778888877766                 7899999999999999999988653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-28  Score=177.75  Aligned_cols=158  Identities=20%  Similarity=0.223  Sum_probs=124.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+|+|.+|||||||++++.++++.. ..|+........                                        
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------   44 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR----------------------------------------   44 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEE----------------------------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeE----------------------------------------
Confidence            599999999999999999999887663 233333222211                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           ....++....+.+||++|++.+...+.      ..++.+|++++|+|+++.+++..+..++..+.. ......|+
T Consensus        45 -----~~~~~~~~~~l~i~D~~g~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i  112 (166)
T d1z0fa1          45 -----IIEVSGQKIKLQIWDTAGQERFRAVTR------SYYRGAAGALMVYDITRRSTYNHLSSWLTDARN-LTNPNTVI  112 (166)
T ss_dssp             -----EEEETTEEEEEEEEECTTGGGTCHHHH------HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEE
T ss_pred             -----EEEECCEEEEEEEeccCCchhHHHHHH------HHhcCCcEEEEEeccCchHHHHHHHHHHHHHHh-hccccceE
Confidence                 112233445789999999999988887      667899999999999999999998877776643 34468999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++++||+|+..  ....++..++.+...                 +++++|||++|.|++++|..|.+.|
T Consensus       113 ilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         113 ILIGNKADLEAQRDVTYEEAKQFAEENG-----------------LLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             EEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEcccccchhhcccHHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999854  456677888877765                 7999999999999999999998875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.7e-29  Score=180.80  Aligned_cols=158  Identities=20%  Similarity=0.233  Sum_probs=120.8

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ..||+|+|++|+|||||++++..+.+. ...||++......                                       
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~---------------------------------------   42 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD---------------------------------------   42 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE---------------------------------------
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecccc---------------------------------------
Confidence            469999999999999999999988765 3345443111100                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             .........+.+||++|++.+...+.      .++..+|++++|+|++++.+|.....++....... ..+.|
T Consensus        43 -------~~~~~~~~~l~i~D~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~p  108 (177)
T d1kmqa_          43 -------IEVDGKQVELALWDTAGLEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVP  108 (177)
T ss_dssp             -------EEETTEEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTSC
T ss_pred             -------ccccccceeeeccccCccchhcccch------hhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCCCc
Confidence                   11223345688999999999988887      77899999999999999999998877776666543 36799


Q ss_pred             EEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHh
Q psy871          180 VLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLA  245 (249)
Q Consensus       180 ~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  245 (249)
                      +++|+||+|+.+.              ...++..++.+...                ..++++|||++|.|++++|+.+.
T Consensus       109 iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~----------------~~~~~E~SAkt~~gi~e~F~~i~  172 (177)
T d1kmqa_         109 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIG----------------AFGYMECSAKTKDGVREVFEMAT  172 (177)
T ss_dssp             EEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTCTTHHHHHHHHH
T ss_pred             eEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcC----------------CcEEEEecCCCCcCHHHHHHHHH
Confidence            9999999999752              34445555555443                26899999999999999999998


Q ss_pred             hh
Q psy871          246 NY  247 (249)
Q Consensus       246 ~~  247 (249)
                      +.
T Consensus       173 ~~  174 (177)
T d1kmqa_         173 RA  174 (177)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=178.69  Aligned_cols=159  Identities=21%  Similarity=0.218  Sum_probs=121.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .+||+|+|.+|+|||||++++.++.+. ...||.+.......                                      
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~--------------------------------------   44 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKK--------------------------------------   44 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEE--------------------------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheee--------------------------------------
Confidence            369999999999999999999988766 34455543333221                                      


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             ....+....+.+||++|.+.+...+.      .++..+|++++|+|++++++|..+..++..+... .....|
T Consensus        45 -------~~~~~~~~~~~~~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~  110 (167)
T d1z08a1          45 -------LNIGGKRVNLAIWDTAGQERFHALGP------IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM-LGNEIC  110 (167)
T ss_dssp             -------EESSSCEEEEEEEECCCC-------C------CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-HGGGSE
T ss_pred             -------eccCCccceeeeeccCCcceecccch------hhccCCceeEEEEeCCchhHHHhhhhhhhhcccc-cccccc
Confidence                   11223456788999999998888877      7788999999999999999999988887765432 336789


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+..  .++.+++.++++..+                 +++++|||++|.|++++|.+|.+.|
T Consensus       111 ~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~-----------------~~~~e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         111 LCIVGNKIDLEKERHVSIQEAESYAESVG-----------------AKHYHTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             eeeeccccccccccccchHHHHHHHHHcC-----------------CeEEEEecCCCcCHHHHHHHHHHHH
Confidence            999999999865  567888888888766                 7899999999999999999999765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-28  Score=182.88  Aligned_cols=160  Identities=18%  Similarity=0.233  Sum_probs=124.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      |+++||+++|++|+|||||++++..+.+. .+.||++......                                     
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~-------------------------------------   43 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-------------------------------------   43 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-------------------------------------
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccee-------------------------------------
Confidence            67899999999999999999999988765 4455554222111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               ....+....+.+||++|++++...+.      .++..+|++++|+|++++++|+.+..++....... ..+
T Consensus        44 ---------~~~~~~~~~l~i~D~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~  107 (191)
T d2ngra_          44 ---------VMIGGEPYTLGLFDTAGQEDYDRLRP------LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPK  107 (191)
T ss_dssp             ---------EEETTEEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTT
T ss_pred             ---------EeeCCceeeeeccccccchhhhhhhh------hcccccceeecccccchHHHHHHHHHHHHHHHhhc-CCC
Confidence                     11122334688999999999988888      77889999999999999999999877666665443 368


Q ss_pred             CcEEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871          178 CPVLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW  243 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  243 (249)
                      .|+++|+||+|+.+              ....++..++.+...                ..++++|||++|.|++++|+.
T Consensus       108 ~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~SAk~~~~V~e~f~~  171 (191)
T d2ngra_         108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK----------------AVKYVECSALTQKGLKNVFDE  171 (191)
T ss_dssp             CCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTT----------------CSCEEECCTTTCTTHHHHHHH
T ss_pred             CceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcC----------------CCeEEEEeCCCCcCHHHHHHH
Confidence            99999999999864              245566666665543                268999999999999999998


Q ss_pred             Hhhh
Q psy871          244 LANY  247 (249)
Q Consensus       244 l~~~  247 (249)
                      +.+.
T Consensus       172 l~~~  175 (191)
T d2ngra_         172 AILA  175 (191)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-28  Score=178.36  Aligned_cols=158  Identities=21%  Similarity=0.240  Sum_probs=122.9

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ++||+++|++|+|||||++++..+.+. .+.||++......                                       
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~---------------------------------------   42 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ---------------------------------------   42 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE---------------------------------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc---------------------------------------
Confidence            679999999999999999999988765 4556654221111                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             ....+....+.+||++|.+.+.. ..      .++..++++++|+|++++.++..+..++..........+.|
T Consensus        43 -------~~~~~~~~~l~i~D~~g~~~~~~-~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  108 (168)
T d2atva1          43 -------ATIDDEVVSMEILDTAGQEDTIQ-RE------GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT  108 (168)
T ss_dssp             -------EEETTEEEEEEEEECCCCCCCHH-HH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC
T ss_pred             -------ccccccceEEEEeeccccccccc-ch------hhhcccccceeecccCCccchhhhhhhcccccccccccCcc
Confidence                   11123345689999999876643 22      34567999999999999999999887665554444457899


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccc-hHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQG-YGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~i  248 (249)
                      +++|+||+|+..  .++.+++.++.+..+                 +++++|||++|.| ++++|..|++.|
T Consensus       109 iilvgnK~Dl~~~r~V~~~e~~~~a~~~~-----------------~~~~e~Saktg~gnV~e~F~~l~~~i  163 (168)
T d2atva1         109 LILVGNKADLDHSRQVSTEEGEKLATELA-----------------CAFYECSACTGEGNITEIFYELCREV  163 (168)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred             eeeeccchhhhhhccCcHHHHHHHHHHhC-----------------CeEEEEccccCCcCHHHHHHHHHHHH
Confidence            999999999965  567888888888776                 7899999999985 999999998765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-28  Score=175.78  Aligned_cols=161  Identities=17%  Similarity=0.174  Sum_probs=128.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ...+||+++|.+|+|||||+++|..+.+. ...||.+......                                     
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~-------------------------------------   46 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ-------------------------------------   46 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEE-------------------------------------
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccc-------------------------------------
Confidence            34679999999999999999999988765 3445544332222                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ..........+.+||++|++.+...+.      .++..++++++|+|.++.+++..+..++..+.+ ....+
T Consensus        47 --------~~~~~~~~~~~~~~d~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~-~~~~~  111 (170)
T d1r2qa_          47 --------TVCLDDTTVKFEIWDTAGQERYHSLAP------MYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPN  111 (170)
T ss_dssp             --------EEEETTEEEEEEEEEECCSGGGGGGHH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-HSCTT
T ss_pred             --------eeeccceEEEEEeccCCCchhhhhhHH------HHhhCcceEEEEeccchhhHHHHHHHHhhhhhh-ccCCC
Confidence                    011223345688999999999988888      677899999999999999999998877777654 33468


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+..  ..+.++..++.+...                 +++++|||++|+|++++|..|.+.|
T Consensus       112 ~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~-----------------~~~~e~SAk~g~~V~e~f~~l~~~i  167 (170)
T d1r2qa_         112 IVIALSGNKADLANKRAVDFQEAQSYADDNS-----------------LLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             ceEEeecccccccccccccHHHHHHHHHhcC-----------------CEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            99999999999865  466777887777665                 7999999999999999999999876

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-28  Score=178.61  Aligned_cols=161  Identities=16%  Similarity=0.207  Sum_probs=120.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+++||+|+|.+|||||||+++|+.+++. ...||++......                                     
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~-------------------------------------   45 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-------------------------------------   45 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEE-------------------------------------
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeee-------------------------------------
Confidence            46789999999999999999999988765 4455544221111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                               ....+....+.+||++|++.+...+.      .++..+|++++|+|++++++|..+..++....+. ...+
T Consensus        46 ---------~~~~~~~~~~~~~d~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~-~~~~  109 (183)
T d1mh1a_          46 ---------VMVDGKPVNLGLWDTAGQEDYDRLRP------LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPN  109 (183)
T ss_dssp             ---------EEETTEEEEEEEECCCCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTT
T ss_pred             ---------eeccCcceEEEeecccccccchhhhh------hcccccceeeeeeccchHHHHHHHHHHHHHHHHH-hCCC
Confidence                     11123345678999999999988888      7788999999999999999999887656555543 2367


Q ss_pred             CcEEEEEecCCCCCC--------------CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871          178 CPVLILGNKIDKHGA--------------ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW  243 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  243 (249)
                      +|+++|+||+|+.++              ....+..++.+...                .++|++|||++|.|++++|..
T Consensus       110 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~----------------~~~~~E~SAk~~~~V~e~F~~  173 (183)
T d1mh1a_         110 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG----------------AVKYLECSALTQRGLKTVFDE  173 (183)
T ss_dssp             SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT----------------CSEEEECCTTTCTTHHHHHHH
T ss_pred             CcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcC----------------CceEEEcCCCCCcCHHHHHHH
Confidence            999999999998643              22233333333322                378999999999999999999


Q ss_pred             Hhhhc
Q psy871          244 LANYI  248 (249)
Q Consensus       244 l~~~i  248 (249)
                      |.+.+
T Consensus       174 l~~~i  178 (183)
T d1mh1a_         174 AIRAV  178 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.1e-28  Score=175.67  Aligned_cols=158  Identities=19%  Similarity=0.189  Sum_probs=123.6

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|.+|||||||++++..+++. ...||.+.......                                       
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~---------------------------------------   46 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKI---------------------------------------   46 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEE---------------------------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEE---------------------------------------
Confidence            58999999999999999999887765 33444443322210                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            .........+.+||++|++++...++      .++..++++++|+|.+++.++..+..++..+... ...++|+
T Consensus        47 ------~~~~~~~~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi  113 (174)
T d2bmea1          47 ------INVGGKYVKLQIWDTAGQERFRSVTR------SYYRGAAGALLVYDITSRETYNALTNWLTDARML-ASQNIVI  113 (174)
T ss_dssp             ------EEETTEEEEEEEEEECCSGGGHHHHH------TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred             ------EEecCcceeEEEEECCCchhhhhhHH------HHhhhCCEEEEEEecccchhHHHHhhhhcccccc-cCCceEE
Confidence                  11122345688999999999988888      7788999999999999999999988888877543 3468999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+..  ....++...+.+...                 +++++|||++|+|++++|.++.+.+
T Consensus       114 ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sak~~~gi~e~f~~l~~~i  166 (174)
T d2bmea1         114 ILCGNKKDLDADREVTFLEASRFAQENE-----------------LMFLETSALTGENVEEAFVQCARKI  166 (174)
T ss_dssp             EEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEecccccchhchhhhHHHHHHHhCC-----------------CEEEEeeCCCCcCHHHHHHHHHHHH
Confidence            99999999855  455666677666655                 7999999999999999999987753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.6e-29  Score=182.53  Aligned_cols=170  Identities=22%  Similarity=0.251  Sum_probs=125.2

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      .+||+++|++|+|||||+++|.++.+.. ..++.+.....       ..+...+....                      
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~----------------------   55 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFRE-------KRVVYNAQGPN----------------------   55 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEE-------EEEEEEC--------------------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeE-------EEEEEeccccc----------------------
Confidence            3699999999999999999999877652 22222211111       11111111000                      


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                            ..........+.+||++|++.+...+.      .++..+|++++|+|++++.++..+..++.++.........|
T Consensus        56 ------~~~~~~~~~~~~i~dt~G~e~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~  123 (186)
T d2f7sa1          56 ------GSSGKAFKVHLQLWDTAGQERFRSLTT------AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD  123 (186)
T ss_dssp             ---------CCEEEEEEEEEEEESHHHHHHHHH------HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE
T ss_pred             ------ccccccceEEeccccCCcchhhHHHHH------HHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCce
Confidence                  011122234688999999999988888      66788999999999999999999888877776555556789


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+.+  ....+++.++.+..+                 +++++|||++|+|++++|++|.+.+
T Consensus       124 iilv~nK~Dl~~~~~v~~~e~~~~~~~~~-----------------~~~~e~Sak~~~~i~e~f~~l~~~i  177 (186)
T d2f7sa1         124 IVLIGNKADLPDQREVNERQARELADKYG-----------------IPYFETSAATGQNVEKAVETLLDLI  177 (186)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EEEEeeeccchhhhcchHHHHHHHHHHcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999965  566788888888766                 7899999999999999999998754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-27  Score=174.82  Aligned_cols=161  Identities=27%  Similarity=0.269  Sum_probs=112.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||+++|+++++. ...||.+......                                        
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~----------------------------------------   42 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTK----------------------------------------   42 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEE----------------------------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeee----------------------------------------
Confidence            58999999999999999999987765 2333333222211                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc---CCCC
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE---SLAS  177 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~  177 (249)
                          ...........+.+||++|++.+...+.      .+++.++++++|+|.+++.+|..+..|+.++....   ....
T Consensus        43 ----~~~~~~~~~~~~~~~d~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~  112 (175)
T d1ky3a_          43 ----EVTVDGDKVATMQVWDTAGQERFQSLGV------AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET  112 (175)
T ss_dssp             ----EECCSSSCCEEEEEECCC----------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTT
T ss_pred             ----eeeecCcccccceeeccCCchhhhhHHH------HHhhccceEEEEeecccccccchhhhcchhhhhhhhhccccc
Confidence                0011112234688999999988887777      77889999999999999999999888887775432   2347


Q ss_pred             CcEEEEEecCCCCCC---CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGA---ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+++++||+|+.+.   ...++..++.+...                ..++++|||++|.|++++|.+|.+.+
T Consensus       113 ~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~SA~~g~gv~e~f~~l~~~~  170 (175)
T d1ky3a_         113 FPFVILGNKIDAEESKKIVSEKSAQELAKSLG----------------DIPLFLTSAKNAINVDTAFEEIARSA  170 (175)
T ss_dssp             CCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT----------------SCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CcEEEEecccchhhhhcchhHHHHHHHHHHcC----------------CCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            899999999998752   45667777776653                26899999999999999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=3.3e-27  Score=169.56  Aligned_cols=160  Identities=26%  Similarity=0.412  Sum_probs=125.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      .||+++|++|||||||+++|.++++....++.....                                            
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~--------------------------------------------   36 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--------------------------------------------   36 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE--------------------------------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEE--------------------------------------------
Confidence            489999999999999999998876653322221111                                            


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL  181 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i  181 (249)
                           .........+.+||++|...+.....      .++..++++++++|.+++.++.....++.++.........|++
T Consensus        37 -----~~~~~~~~~~~~~d~~g~~~~~~~~~------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  105 (160)
T d1r8sa_          37 -----ETVEYKNISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL  105 (160)
T ss_dssp             -----EEEECSSCEEEEEECCCCGGGHHHHH------HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE
T ss_pred             -----EEEeeeeEEEEEecCCCcccchhhhh------hhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEE
Confidence                 11123345689999999988877766      6778899999999999999999988888888877777789999


Q ss_pred             EEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          182 ILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       182 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++||+|+.+.....++........            .....+++++|||++|+|++++|+||.++|
T Consensus       106 ~v~~k~d~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         106 VFANKQDLPNAMNAAEITDKLGLHS------------LRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             EEEECTTSTTCCCHHHHHHHTTGGG------------CSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             EEeecccccccccHHHHHHHHHHHH------------HhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            9999999988777777665544322            122347899999999999999999999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=174.30  Aligned_cols=164  Identities=26%  Similarity=0.433  Sum_probs=124.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++++||+|+|.+|||||||+++|.+.++....++.+....                                        
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~----------------------------------------   52 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----------------------------------------   52 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE----------------------------------------
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEE----------------------------------------
Confidence            7789999999999999999999988665432222221111                                        


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                               .....+..+.++|.++.+.......      ..+..++++++++|.++..++...................
T Consensus        53 ---------~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~  117 (177)
T d1zj6a1          53 ---------EIVINNTRFLMWDIGGQESLRSSWN------TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA  117 (177)
T ss_dssp             ---------EEEETTEEEEEEECCC----CGGGH------HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTC
T ss_pred             ---------EEeecceEEEEeccccccccccchh------hhhccceeeeeecccccccchhhhhhhhhhhhhcccccce
Confidence                     1123456789999999887777666      5667899999999999999998876666666666666789


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      |+++|+||+|+......+++.+......            .....+++++|||++|+|++++++||.++|.
T Consensus       118 p~iiv~nK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         118 GLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWHIQACCALTGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHHTGGG------------CCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             EEEEEEEcccccccCcHHHHHHHHHHHh------------hHhcCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            9999999999988777787777776443            2334589999999999999999999998873

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-27  Score=174.84  Aligned_cols=161  Identities=22%  Similarity=0.232  Sum_probs=128.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .++||+++|.+|+|||||+++|.++++.. ..++.+......                                      
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------   47 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK--------------------------------------   47 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--------------------------------------
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeE--------------------------------------
Confidence            46799999999999999999999877653 223332222111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                             ...+......+.+||++|++++...+.      .++..+|++++|+|++++.++..+..++.++.+.......
T Consensus        48 -------~~~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  114 (177)
T d1x3sa1          48 -------TISVDGNKAKLAIWDTAGQERFRTLTP------SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI  114 (177)
T ss_dssp             -------EEEETTEEEEEEEEEECSSGGGCCSHH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCC
T ss_pred             -------EEEEeccccEEEEEECCCchhhHHHHH------HHHhcCCEEEEEEECCCccccccchhhhhhhcccccccce
Confidence                   011233455688999999999888777      6678999999999999999999999898888766556679


Q ss_pred             cEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          179 PVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       179 p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      |+++++||+|... ....++..++.+...                 +++++|||++|+|++++|+++.+.+
T Consensus       115 ~i~~~~nk~d~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sa~tg~gv~e~f~~l~~~l  168 (177)
T d1x3sa1         115 VNMLVGNKIDKENREVDRNEGLKFARKHS-----------------MLFIEASAKTCDGVQCAFEELVEKI  168 (177)
T ss_dssp             EEEEEEECTTSSSCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eeEEEeeccccccccccHHHHHHHHHHCC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999866 556777888777766                 7899999999999999999998754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.6e-28  Score=175.03  Aligned_cols=158  Identities=21%  Similarity=0.207  Sum_probs=122.6

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+|+|++|+|||||++++.+.++.. ..|+.......                                         
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~-----------------------------------------   42 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-----------------------------------------   42 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEE-----------------------------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccce-----------------------------------------
Confidence            589999999999999999998876552 22222211111                                         


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                          ...........+.+||++|++.+...+.      ..+..+|++++|+|++++.+|..+..++..+.+. ...++|+
T Consensus        43 ----~~~~~~~~~~~~~i~d~~g~~~~~~~~~------~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~-~~~~~pi  111 (173)
T d2a5ja1          43 ----RMVNIDGKQIKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SSSNMVI  111 (173)
T ss_dssp             ----EEEEETTEEEEEEEECCTTGGGTSCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred             ----eeeeeeeeEEEEEeecccCccchhhHHH------HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHh-CCCCCeE
Confidence                1112223456789999999998888777      6678899999999999999999999888877543 3467999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+..  ....++...+.+...                 +++++|||++|.|++++|..|.+.|
T Consensus       112 ilv~nK~D~~~~~~~~~~~~~~~a~~~~-----------------~~~~e~Sa~tg~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         112 MLIGNKSDLESRRDVKREEGEAFAREHG-----------------LIFMETSAKTACNVEEAFINTAKEI  164 (173)
T ss_dssp             EEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEEecCCchhhhhhhHHHHHHHHHHHcC-----------------CEEEEecCCCCCCHHHHHHHHHHHH
Confidence            99999999754  566777888887766                 7899999999999999999998754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-27  Score=173.48  Aligned_cols=159  Identities=20%  Similarity=0.213  Sum_probs=127.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ++||+++|.+|+|||||++++..+++. ...||.+.......                                      
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~--------------------------------------   44 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQR--------------------------------------   44 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEE--------------------------------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccc--------------------------------------
Confidence            579999999999999999999988865 34455553222210                                      


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             ....+....+.+||++|++.+...+.      .++..+|++++|+|.+++.++..+..++.+.... .....|
T Consensus        45 -------i~~~~~~~~l~i~d~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~  110 (170)
T d1ek0a_          45 -------VTINEHTVKFEIWDTAGQERFASLAP------MYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ-ASKDII  110 (170)
T ss_dssp             -------EEETTEEEEEEEEEECCSGGGGGGHH------HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCE
T ss_pred             -------cccccccccccccccCCchhHHHHHH------HHHhccceEEEEEeCCcccchhhhhhhhhhhccc-cccccc
Confidence                   11223345788999999999888877      6788999999999999999999998887766443 346789


Q ss_pred             EEEEEecCCCCC-----CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG-----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++++||+|+.+     ....++..++.+..+                 +++++|||++|.|++++|..|.++|
T Consensus       111 ~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         111 IALVGNKIDMLQEGGERKVAREEGEKLAEEKG-----------------LLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             EEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-----------------CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             eeeeecccccccccchhhhhHHHHHHHHHHcC-----------------CEEEEecCCCCcCHHHHHHHHHHHh
Confidence            999999999853     456788888888776                 8999999999999999999999876

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-27  Score=173.87  Aligned_cols=158  Identities=18%  Similarity=0.221  Sum_probs=120.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+++|++|||||||++++.++.+. ...++.+......                                        
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------   44 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR----------------------------------------   44 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEE----------------------------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeE----------------------------------------
Confidence            59999999999999999999887765 2233333222111                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                           .....+....+.+||++|.+.+.....      ..+..++++++|+|.+++.+|..+..++..+... ...++|+
T Consensus        45 -----~~~~~~~~~~~~i~d~~g~e~~~~~~~------~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~-~~~~~pi  112 (175)
T d2f9la1          45 -----SIQVDGKTIKAQIWDTAGQERYRRITS------AYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVI  112 (175)
T ss_dssp             -----EEEETTEEEEEEEEECSSGGGTTCCCH------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred             -----EEEECCEEEEEEecccCCcHHHHHHHH------HHhhccCeEEEEEECCCcccchhHHHHHHHHHHh-cCCCCcE
Confidence                 111223345788999999998888777      6678899999999999999999998888877543 3367999


Q ss_pred             EEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++|+||+|+.+  ....+......+...                 .++++|||++|.|++++|+++.+.+
T Consensus       113 ilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         113 MLVGNKSDLRHLRAVPTDEARAFAEKNN-----------------LSFIETSALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             EEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeeecccccccchHHHHHHhhcccC-----------------ceEEEEecCCCcCHHHHHHHHHHHH
Confidence            99999999975  344455555555444                 7899999999999999999988764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.7e-27  Score=175.50  Aligned_cols=159  Identities=23%  Similarity=0.251  Sum_probs=125.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      -+||+|+|.+|||||||+++|+.+.+. ...||.+.......                                      
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~--------------------------------------   47 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKT--------------------------------------   47 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEE--------------------------------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEE--------------------------------------
Confidence            368999999999999999999987755 44555554433221                                      


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             ..+...+..+.+||++|++++...+.      .+++.+|++++|+|++++.++.....++..+. .......|
T Consensus        48 -------i~~~~~~~~l~i~Dt~G~e~~~~~~~------~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~-~~~~~~~~  113 (194)
T d2bcgy1          48 -------VELDGKTVKLQIWDTAGQERFRTITS------SYYRGSHGIIIVYDVTDQESFNGVKMWLQEID-RYATSTVL  113 (194)
T ss_dssp             -------EEETTEEEEEEEECCTTTTTTTCCCG------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHH-HHSCTTCE
T ss_pred             -------EEEeeEEEEEEEEECCCchhhHHHHH------HHhccCCEEEEEEeCcchhhhhhHhhhhhhhh-hcccCCce
Confidence                   11233456789999999999988877      67789999999999999999999887766654 33457899


Q ss_pred             EEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+.+  ....++.....+...                 .++++|||++|.|++++|++|.+.|
T Consensus       114 iilv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~e~SAk~g~gi~e~f~~l~~~i  167 (194)
T d2bcgy1         114 KLLVGNKCDLKDKRVVEYDVAKEFADANK-----------------MPFLETSALDSTNVEDAFLTMARQI  167 (194)
T ss_dssp             EEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEEeccccccccchhHHHHhhhhhccC-----------------cceEEEecCcCccHHHHHHHHHHHH
Confidence            999999999976  455666666666655                 7899999999999999999998754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-27  Score=171.26  Aligned_cols=161  Identities=20%  Similarity=0.239  Sum_probs=120.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      .-.+||+++|++|||||||+++++.+++.  ...++.+......                                    
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------   47 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK------------------------------------   47 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEE------------------------------------
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEE------------------------------------
Confidence            34579999999999999999999887754  2233333333222                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                               .....+....+.+|||+|++.+...+.      .++..+|++++|+|.+++.++..+..++....... ..
T Consensus        48 ---------~~~~~~~~~~l~i~Dt~G~e~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~  111 (170)
T d2g6ba1          48 ---------VLDVDGVKVKLQMWDTAGQERFRSVTH------AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QH  111 (170)
T ss_dssp             ---------EEEETTEEEEEEEEECCCC--------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CT
T ss_pred             ---------EEEecCcEEEEEEEECCCchhhHHHHH------HhhcCCceeEEEecCCcccchhhhhhhhhhhhhcc-CC
Confidence                     111223345689999999999988877      77889999999999999999999887777765442 36


Q ss_pred             CCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..|+++|+||+|+..  ....+++.++.+...                 +++++|||++|.|++++|++|.+.|
T Consensus       112 ~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sak~g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         112 DVALMLLGNKVDSAHERVVKREDGEKLAKEYG-----------------LPFMETSAKTGLNVDLAFTAIAKEL  168 (170)
T ss_dssp             TCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT-----------------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CceEEEEEeeechhhcccccHHHHHHHHHHcC-----------------CEEEEEeCCCCcCHHHHHHHHHHHc
Confidence            789999999999876  556778888887766                 7999999999999999999999876

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.8e-27  Score=170.29  Aligned_cols=158  Identities=20%  Similarity=0.193  Sum_probs=122.1

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      |.+||+++|++|||||||++++..+.+. ...++.+......                                      
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------   42 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRER--------------------------------------   42 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEE--------------------------------------
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccccccee--------------------------------------
Confidence            3579999999999999999999987765 3333333222221                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhh-HHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEES-KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                             ...+......+.+||++|....... ..      .++..+|++++|+|++++.+|..+..++.++.+.....+
T Consensus        43 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~  109 (165)
T d1z06a1          43 -------AVDIDGERIKIQLWDTAGQERFRKSMVQ------HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND  109 (165)
T ss_dssp             -------EEEETTEEEEEEEEECCCSHHHHTTTHH------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSC
T ss_pred             -------eeeeeccceEEEEEeccCchhhccccce------eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCC
Confidence                   1112334567889999997765443 34      456789999999999999999999889988877666678


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecc---ccchHHHHHHHh
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLM---RQGYGDGFRWLA  245 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---g~gv~~l~~~l~  245 (249)
                      .|+++|+||+|+.+  ++..++++++.+..+                 +++++|||++   +.||+++|++|+
T Consensus       110 ~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         110 IPRILVGNKCDLRSAIQVPTDLAQKFADTHS-----------------MPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             CeEEEEeccccchhccchhHHHHHHHHHHCC-----------------CEEEEEecccCCcCcCHHHHHHHhC
Confidence            99999999999865  467888888888766                 7899999997   569999999874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-27  Score=172.12  Aligned_cols=159  Identities=15%  Similarity=0.189  Sum_probs=118.3

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ..+||+++|.+|+|||||++++++..+.  ...+|.+......                                     
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~-------------------------------------   44 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYER-------------------------------------   44 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEE-------------------------------------
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeeccee-------------------------------------
Confidence            3579999999999999999999876654  2222222111111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCC---chhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSD---RERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES  174 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g---~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~  174 (249)
                              ...+.+....+.+||+++   ++++  ...      .++..+|++++|+|++++.++..+..|+.++.....
T Consensus        45 --------~~~~~~~~~~~~~~d~~~~~g~e~~--~~~------~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~  108 (172)
T d2g3ya1          45 --------TLMVDGESATIILLDMWENKGENEW--LHD------HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ  108 (172)
T ss_dssp             --------EEEETTEEEEEEEECCTTTTHHHHH--HHH------CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG
T ss_pred             --------eeccCCceeeeeeeccccccccccc--ccc------ccccccceeeeeecccccchhhhhhhhhhhhhhccc
Confidence                    011223344577888765   3333  222      567889999999999999999999888888876555


Q ss_pred             CCCCcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..++|+++|+||+|+.+  +...++..++.+..+                 +++++|||++|.|++++|+.|++.|
T Consensus       109 ~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~-----------------~~~~e~Sak~g~~i~~~f~~l~~~i  167 (172)
T d2g3ya1         109 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-----------------CKFIETSAAVQHNVKELFEGIVRQV  167 (172)
T ss_dssp             GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cCCceEEEEeccccccccccccHHHHHHHHHHcC-----------------CeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            57899999999999865  566788877777766                 8999999999999999999999875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=5.5e-28  Score=176.06  Aligned_cols=161  Identities=22%  Similarity=0.249  Sum_probs=98.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ..-+||+++|.+|||||||+++|+++.+. ...||++......                                     
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------   46 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIR-------------------------------------   46 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEE-------------------------------------
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEE-------------------------------------
Confidence            44569999999999999999999876654 2223333222111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                              ...+.+....+.+||+||++.+...+.      .+++.+|++++|+|++++.++..+..++..+. .....+
T Consensus        47 --------~~~~~~~~~~l~i~D~~G~e~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~  111 (173)
T d2fu5c1          47 --------TIELDGKRIKLQIWDTAGQERFRTITT------AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE-EHASAD  111 (173)
T ss_dssp             --------EEEETTEEEEEEEEEC---------CC------TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHH-HHSCTT
T ss_pred             --------EEEECCEEEEEEEEECCCchhhHHHHH------HhccCCCEEEEEEECCChhhHHHHHHHHHHhh-hhccCC
Confidence                    011223345788999999999988877      67889999999999999999999887777764 334577


Q ss_pred             CcEEEEEecCCCCC--CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG--AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .|+++|+||+|+..  ....++.........                 +++++|||++|+|++++|.+|.+.|
T Consensus       112 ~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~g~gv~e~f~~l~~~i  167 (173)
T d2fu5c1         112 VEKMILGNKCDVNDKRQVSKERGEKLALDYG-----------------IKFMETSAKANINVENAFFTLARDI  167 (173)
T ss_dssp             CEEEEEEEC--CCSCCCSCHHHHHHHHHHHT-----------------CEEEECCC---CCHHHHHHHHHHHH
T ss_pred             ceEEEEEecccchhhcccHHHHHHHHHHhcC-----------------CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999976  445566777776665                 8999999999999999999998865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-26  Score=169.26  Aligned_cols=163  Identities=19%  Similarity=0.195  Sum_probs=123.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ++-+||+|+|.+|||||||+++++.+.+. ...+|.+......                                     
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~-------------------------------------   46 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNK-------------------------------------   46 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEE-------------------------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeee-------------------------------------
Confidence            45679999999999999999999987765 2333333221111                                     


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh---ccC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT---DES  174 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~---~~~  174 (249)
                              .....+....+.+||++|.........      ..+..++++++++|.+++.++..+..|+.++..   ...
T Consensus        47 --------~~~~~~~~~~~~i~d~~g~~~~~~~~~------~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~  112 (174)
T d1wmsa_          47 --------DLEVDGHFVTMQIWDTAGQERFRSLRT------PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE  112 (174)
T ss_dssp             --------EEEETTEEEEEEEEECCCCGGGHHHHG------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSC
T ss_pred             --------eeeecCceeeEeeecccCcceehhhhh------hhhhccceEEEEEeeecccccchhhhHHHHHHHHhcccc
Confidence                    112233445688999999888777666      777899999999999999999988877766643   223


Q ss_pred             CCCCcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          175 LASCPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       175 ~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..+.|+++|+||+|+.+ ....+++.++.+...                ..++++|||++|+|++++|++|.+.|
T Consensus       113 ~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~----------------~~~~~e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         113 PESFPFVILGNKIDISERQVSTEEAQAWCRDNG----------------DYPYFETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             TTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTT----------------CCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCceEEEeccccchhhccCcHHHHHHHHHHcC----------------CCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            35689999999999966 567778888877543                26899999999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8e-27  Score=168.73  Aligned_cols=158  Identities=20%  Similarity=0.234  Sum_probs=121.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      .||+++|.+|||||||+++|+.+++. ...||.+.......                                       
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~---------------------------------------   43 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKT---------------------------------------   43 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEE---------------------------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEE---------------------------------------
Confidence            58999999999999999999988765 33455544433331                                       


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcE
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPV  180 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~  180 (249)
                            ..+.+....+.+||+||++.+...+.      .+++.++++++|+|.++++++..+..++...... .....|+
T Consensus        44 ------i~~~~~~~~~~i~Dt~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~  110 (166)
T d1g16a_          44 ------VDINGKKVKLQIWDTAGQERFRTITT------AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH-ANDEAQL  110 (166)
T ss_dssp             ------EESSSCEEEEEEECCTTGGGTSCCCH------HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred             ------EEECCEEEEEEEEECCCchhhHHHHH------HHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcc-ccCccee
Confidence                  11233445688999999998887777      6678999999999999999999887766665443 4467899


Q ss_pred             EEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          181 LILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       181 ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ++++||.|+.. ....++..++.+..+                 +++++|||++|+|++++|++|.+.+
T Consensus       111 i~~~~k~d~~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~v~e~f~~l~~~i  162 (166)
T d1g16a_         111 LLVGNKSDMETRVVTADQGEALAKELG-----------------IPFIESSAKNDDNVNEIFFTLAKLI  162 (166)
T ss_dssp             EEEEECTTCTTCCSCHHHHHHHHHHHT-----------------CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             eeecchhhhhhhhhhHHHHHHHHHhcC-----------------CeEEEECCCCCCCHHHHHHHHHHHH
Confidence            99999999976 456677777777665                 8999999999999999999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.1e-26  Score=170.84  Aligned_cols=160  Identities=21%  Similarity=0.214  Sum_probs=122.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +||+|+|.+|||||||+++|+++.+. .+.||++......                                        
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~----------------------------------------   42 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK----------------------------------------   42 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE----------------------------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeee----------------------------------------
Confidence            58999999999999999999987765 3445554333222                                        


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccC---CCC
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDES---LAS  177 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~  177 (249)
                           .....+....+.+||++|.......+.      ..+..+|++++|+|.+++.++..+..|+.++.....   ..+
T Consensus        43 -----~~~~~~~~~~~~~~d~~g~~~~~~~~~------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  111 (184)
T d1vg8a_          43 -----EVMVDDRLVTMQIWDTAGQERFQSLGV------AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN  111 (184)
T ss_dssp             -----EEESSSCEEEEEEEEECSSGGGSCSCC------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGG
T ss_pred             -----eeeeCCceEEEEeeecCCccccccccc------ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccC
Confidence                 112233455688999999888777776      667889999999999999999998888777654322   346


Q ss_pred             CcEEEEEecCCCCC-CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHG-AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+++|+||+|+.+ ....++..++.....                .+++++|||++|.|++++|++|.+.+
T Consensus       112 ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~e~Sak~~~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         112 FPFVVLGNKIDLENRQVATKRAQAWCYSKN----------------NIPYFETSAKEAINVEQAFQTIARNA  167 (184)
T ss_dssp             SCEEEEEECTTSSCCCSCHHHHHHHHHHTT----------------SCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCEEEEEEeecccccchhHHHHHHHHHHhc----------------CCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            89999999999876 445556665554432                27899999999999999999997753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=9.5e-27  Score=170.24  Aligned_cols=159  Identities=19%  Similarity=0.208  Sum_probs=121.7

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ..||+++|.+|+|||||++++..+.+. .+.||++......                                       
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~---------------------------------------   42 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS---------------------------------------   42 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE---------------------------------------
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeccccc---------------------------------------
Confidence            358999999999999999999988765 3445543111110                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                             ....+....+.+||++|++.+...+.      .++..+|++++|+|++++.+|..+..++...+... ..+.|
T Consensus        43 -------~~~~~~~~~~~i~D~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~  108 (179)
T d1m7ba_          43 -------FEIDTQRIELSLWDTSGSPYYDNVRP------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTK  108 (179)
T ss_dssp             -------EECSSCEEEEEEEEECCSGGGTTTGG------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCE
T ss_pred             -------ccccceEEeecccccccccccccccc------chhhhhhhhheeeecccCCCHHHHHHHHHHHHhcc-CCcce
Confidence                   11123345688999999999888777      77889999999999999999999887776665443 36899


Q ss_pred             EEEEEecCCCCC--------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeecccc-chHHHHHHH
Q psy871          180 VLILGNKIDKHG--------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQ-GYGDGFRWL  244 (249)
Q Consensus       180 ~ivv~nK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-gv~~l~~~l  244 (249)
                      +++|+||+|+..              ..+.++..++.+...                ..+|++|||++|+ |++++|+.+
T Consensus       109 iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~----------------~~~y~E~SAk~~~n~i~~~F~~~  172 (179)
T d1m7ba_         109 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG----------------AATYIECSALQSENSVRDIFHVA  172 (179)
T ss_dssp             EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT----------------CSEEEECBTTTBHHHHHHHHHHH
T ss_pred             EEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhC----------------CCeEEEEeCCCCCcCHHHHHHHH
Confidence            999999999853              355667777766654                2689999999998 599999998


Q ss_pred             hhhc
Q psy871          245 ANYI  248 (249)
Q Consensus       245 ~~~i  248 (249)
                      .+.+
T Consensus       173 ~~~~  176 (179)
T d1m7ba_         173 TLAC  176 (179)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.4e-25  Score=160.38  Aligned_cols=165  Identities=47%  Similarity=0.703  Sum_probs=127.2

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      ||+++|++|||||||+|+|+++.+....||.+......                                          
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~------------------------------------------   39 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL------------------------------------------   39 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEE------------------------------------------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEe------------------------------------------
Confidence            89999999999999999999988776666655333332                                          


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEE
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                             ...+....++|+++...+.....      ..+..++++++++|.++...+.....++..........+.|+++
T Consensus        40 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i  106 (166)
T d2qtvb1          40 -------AIGNIKFTTFDLGGHIQARRLWK------DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI  106 (166)
T ss_dssp             -------CCTTCCEEEEECCCSGGGGGGGG------GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEE
T ss_pred             -------ccCCeeEEEEeeccchhhhhhHh------hhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEE
Confidence                   12234577899999887777766      66788999999999999999888777777776666667899999


Q ss_pred             EEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          183 LGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       183 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ++||.|+.......++.+.+.........     .....+.+++++|||++|+|++|+|+||.++
T Consensus       107 ~~~k~d~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~~  166 (166)
T d2qtvb1         107 LGNKIDAPNAVSEAELRSALGLLNTTGSQ-----RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  166 (166)
T ss_dssp             EEECTTSSSCCCHHHHHHHHTCSSCCC--------CCSSCCEEEEEEBTTTTBSHHHHHHHHTTC
T ss_pred             EeccccccccCCHHHHHHHhhhhhhhHHH-----hhcccCCCEEEEeeCCCCCCHHHHHHHHhCC
Confidence            99999998887888887766543311111     0112345789999999999999999999874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.8e-26  Score=164.00  Aligned_cols=157  Identities=12%  Similarity=0.118  Sum_probs=115.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ++++||+++|++|||||||++++.++++....+|........                                      
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~--------------------------------------   44 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKE--------------------------------------   44 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEE--------------------------------------
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEE--------------------------------------
Confidence            568999999999999999999999988765444433211100                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHh--ccCCC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLT--DESLA  176 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~~~~  176 (249)
                              ...++....+.+||++|+..+.           ++..+|++++|||++++.+|..+..|...+..  .....
T Consensus        45 --------i~v~~~~~~l~i~Dt~g~~~~~-----------~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~  105 (175)
T d2bmja1          45 --------MLVDGQTHLVLIREEAGAPDAK-----------FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRG  105 (175)
T ss_dssp             --------EEETTEEEEEEEEECSSCCCHH-----------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CC
T ss_pred             --------eecCceEEEEEEeecccccccc-----------cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccC
Confidence                    0112334678899999987543           35569999999999999999998877666532  22335


Q ss_pred             CCcEEEEEecCCCCC----CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHG----AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..|+++|+||.|+..    ....++...+.+...                ..++++|||++|.|++++|..+.+.+
T Consensus       106 ~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~----------------~~~~~e~SAk~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         106 GLALALVGTQDRISASSPRVVGDARARALCADMK----------------RCSYYETCATYGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             CCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTST----------------TEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             CccEEEEeeecCcchhhhcchhHHHHHHHHHHhC----------------CCeEEEeCCCCCcCHHHHHHHHHHHH
Confidence            689999999998743    344566666654432                27899999999999999999988754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=8.6e-25  Score=158.08  Aligned_cols=162  Identities=26%  Similarity=0.400  Sum_probs=125.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +++||+++|.+|||||||++++++.++....+|.+......                                       
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~---------------------------------------   44 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETV---------------------------------------   44 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEE---------------------------------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeee---------------------------------------
Confidence            46799999999999999999999988765444444222111                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                                ......+.++|.++.+.+.....      ..+...+++++++|+.+..++......+............|
T Consensus        45 ----------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (169)
T d1upta_          45 ----------TYKNLKFQVWDLGGLTSIRPYWR------CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI  108 (169)
T ss_dssp             ----------EETTEEEEEEEECCCGGGGGGGG------GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE
T ss_pred             ----------ccCceEEEEeeccccccccccch------hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccce
Confidence                      12245678899999887777666      66788999999999999888887776777766666667899


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++++||+|+.+.....++........            .....+++++|||++|+|+++++++|.+.|
T Consensus       109 i~iv~nk~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l  165 (169)
T d1upta_         109 LVVFANKQDMEQAMTSSEMANSLGLPA------------LKDRKWQIFKTSATKGTGLDEAMEWLVETL  165 (169)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHHTGGG------------CTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEEeeccccccccHHHHHHHHHHHH------------HhcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999998777777766554322            223458999999999999999999998865

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.9e-24  Score=157.82  Aligned_cols=162  Identities=20%  Similarity=0.189  Sum_probs=107.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      ..|+|+|++|||||||+|+|++.+.....+..+....                                           
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~-------------------------------------------   42 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRK-------------------------------------------   42 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS-------------------------------------------
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccc-------------------------------------------
Confidence            4799999999999999999998765432222111111                                           


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHH--HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKS--ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~--~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                        .........+..+.++||||.........  ....+...+..+|++++|+|++++.....  .++.+.++.. ..++|
T Consensus        43 --~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~--~~i~~~l~~~-~~~~p  117 (178)
T d1wf3a1          43 --RLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPL-VGKVP  117 (178)
T ss_dssp             --CEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-TTTSC
T ss_pred             --cccceeeeeeeeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccc--cchhhheecc-ccchh
Confidence              11111223356789999999765433332  12334566788999999999988644332  3444544432 25789


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+...  .++..+..+...               ....++++||++|.|+++++++|.+.|
T Consensus       118 iilv~NK~Dl~~~--~~~~~~~~~~~~---------------~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         118 ILLVGNKLDAAKY--PEEAMKAYHELL---------------PEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             EEEEEECGGGCSS--HHHHHHHHHHTS---------------TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             hhhhhcccccccC--HHHHHHHHHhhc---------------ccCceEEEecCCCCCHHHHHHHHHHhC
Confidence            9999999999763  344433333321               235789999999999999999999876

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.92  E-value=1.6e-25  Score=163.71  Aligned_cols=172  Identities=15%  Similarity=0.116  Sum_probs=107.1

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .++..+|+++|++|||||||+|+|++.......+....  ...                .                   +
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~--~~~----------------~-------------------g   44 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPE--SQK----------------R-------------------G   44 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC----------------------------------------------------
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccc--eee----------------e-------------------e
Confidence            46788999999999999999999986432211110000  000                0                   0


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                      .  +.......+...+..+.++|++|+..+.....      ..+..+|++++|+|+++....+..  .+...+..   .+
T Consensus        45 ~--~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~------~~l~~~d~~ilv~d~~~g~~~~~~--~~~~~~~~---~~  111 (179)
T d1wb1a4          45 I--TIDIGFSAFKLENYRITLVDAPGHADLIRAVV------SAADIIDLALIVVDAKEGPKTQTG--EHMLILDH---FN  111 (179)
T ss_dssp             -------CCCEEEETTEEEEECCCSSHHHHHHHHH------HHTTSCCEEEEEEETTTCSCHHHH--HHHHHHHH---TT
T ss_pred             e--eccccccccccCCccccccccccccccccchh------hhhhhccccccccccccccchhhh--hhhhhhhh---cC
Confidence            0  11111122233456788999999987776655      567789999999999986443332  22223333   68


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +|+++|+||+|+......+......+.+...         ..+....+++++||++|+|++++++.|.+.+
T Consensus       112 ~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l  173 (179)
T d1wb1a4         112 IPIIVVITKSDNAGTEEIKRTEMIMKSILQS---------THNLKNSSIIPISAKTGFGVDELKNLIITTL  173 (179)
T ss_dssp             CCBCEEEECTTSSCHHHHHHHHHHHHHHHHH---------SSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcceeccccccccCHHHHHHHHHHHHHHHHH---------hhcCCCCeEEEEEccCCcCHHHHHHHHHhcC
Confidence            9999999999998742222222222221100         0122347899999999999999999998765

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=2.5e-24  Score=157.47  Aligned_cols=162  Identities=18%  Similarity=0.180  Sum_probs=102.7

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      .|+++|.+|||||||+|+|++...........                                          +...+ 
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~------------------------------------------t~~~~-   39 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT------------------------------------------TLSPN-   39 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTC------------------------------------------SSCCE-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCC------------------------------------------ceeee-
Confidence            69999999999999999998754331111000                                          00000 


Q ss_pred             eceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChh--hhHhhHHHHHHHHhccCCCCCc
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRE--RFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                        ........+..+.+|||||...... .......++..+..++++++++|.....  .......++...  .....++|
T Consensus        40 --~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p  115 (180)
T d1udxa2          40 --LGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAY--DPALLRRP  115 (180)
T ss_dssp             --EEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHH--CHHHHHSC
T ss_pred             --eceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhcc--ccccchhh
Confidence              0011122344678999999653222 2223345667788999999999987643  222222222222  11124689


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+..+...++..+.+...                 ..+++++||++|+|++++++.|.+.+
T Consensus       116 ~iiv~NK~D~~~~~~~~~~~~~~~~~-----------------~~~~~~iSA~tg~gid~L~~~i~~~l  167 (180)
T d1udxa2         116 SLVALNKVDLLEEEAVKALADALARE-----------------GLAVLPVSALTGAGLPALKEALHALV  167 (180)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTT-----------------TSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHhc-----------------CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            99999999998753344444444332                 37899999999999999999998765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=6.7e-24  Score=152.39  Aligned_cols=158  Identities=17%  Similarity=0.189  Sum_probs=106.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      +||+++|++|||||||+|+|++.+......+.+.....+                                         
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~-----------------------------------------   40 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL-----------------------------------------   40 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCE-----------------------------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceE-----------------------------------------
Confidence            489999999999999999999876543222222111111                                         


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhhhHH--HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEESKS--ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~--~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                          ...+...+..+.++|++|.........  ........+..+|++++++|..+...+..... +.+++.. ...+.|
T Consensus        41 ----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~-~~~~~~  114 (161)
T d2gj8a1          41 ----REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEI-WPEFIAR-LPAKLP  114 (161)
T ss_dssp             ----EEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHH-CHHHHHH-SCTTCC
T ss_pred             ----eeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhh-hhhhhhh-cccccc
Confidence                112233455788999999654433222  22334466788999999999999877655543 2333332 235799


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+..+..      .+.                .....+++++||++|+|+++++++|.+.|
T Consensus       115 iilv~NK~Dl~~~~~------~~~----------------~~~~~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         115 ITVVRNKADITGETL------GMS----------------EVNGHALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             EEEEEECHHHHCCCC------EEE----------------EETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             eeeccchhhhhhhHH------HHH----------------HhCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence            999999999865311      011                11347899999999999999999999865

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.90  E-value=8.1e-23  Score=151.14  Aligned_cols=189  Identities=13%  Similarity=0.060  Sum_probs=108.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC--CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ--PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +++++|+++|++++|||||+++|++.....  .....+.....-     ............+.                 
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~-----~~~~~~~~~~~~~~-----------------   60 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG-----FADAEIRRCPNCGR-----------------   60 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCE-----EEEEEEEECTTTCC-----------------
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccc-----hhhhhhhccchhhh-----------------
Confidence            467799999999999999999998743321  111111111100     00000111111000                 


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLA  176 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (249)
                      ...................+.++|+||+..|.....      +.+..+|++++|+|+.+........+.+......   .
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~------~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~  131 (195)
T d1kk1a3          61 YSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTML------AGASLMDGAILVIAANEPCPRPQTREHLMALQII---G  131 (195)
T ss_dssp             EESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHH------HCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---T
T ss_pred             ccceeeeeeeeeeecCceeEeeeccchhhhhhHHhh------cccccccccccccchhhhhhhhhhHHHHHHHHHh---c
Confidence            000011111112222344588999999998877766      6778899999999999864333333333332221   2


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          177 SCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..+++++.||+|+.+.....+..+.+....          +......++++++||++|+|+++|++.+.++|
T Consensus       132 ~~~iiv~inK~D~~d~~~~~~~~~~~~~~~----------~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         132 QKNIIIAQNKIELVDKEKALENYRQIKEFI----------EGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             CCCEEEEEECGGGSCHHHHHHHHHHHHHHH----------TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CccceeeeecccchhhHHHHHHHHHHHHHh----------ccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            345788999999987422222222222211          01223457899999999999999999988765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.4e-23  Score=152.15  Aligned_cols=159  Identities=19%  Similarity=0.159  Sum_probs=96.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      .|+|+|++|||||||+|+|++........+.+.                                             +.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~---------------------------------------------t~   36 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGV---------------------------------------------TR   36 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-----------------------------------------------------------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCce---------------------------------------------ee
Confidence            799999999999999999987544321111111                                             11


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhh---HHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEES---KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~---~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                      ......+......+.++|++|.......   ..........+..+|+++++.|.++.......  .+..+++.   .++|
T Consensus        37 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~--~~~~~l~~---~~~p  111 (171)
T d1mkya1          37 DPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDE--SLADFLRK---STVD  111 (171)
T ss_dssp             CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHH--HHHHHHHH---HTCC
T ss_pred             ccccccccccccccccccccceeeeeccccccccccccccccccCcEEEEeeccccccccccc--cccccccc---cccc
Confidence            1111223444567889999984332211   11223344556789999999999875544332  33333333   5789


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      +++|+||+|+.++...+...+..+. .                ..+++++||++|.|+++++++|.++|
T Consensus       112 viiv~NK~Dl~~~~~~~~~~~~~~~-~----------------~~~~i~iSAk~g~gid~L~~~i~~~l  163 (171)
T d1mkya1         112 TILVANKAENLREFEREVKPELYSL-G----------------FGEPIPVSAEHNINLDTMLETIIKKL  163 (171)
T ss_dssp             EEEEEESCCSHHHHHHHTHHHHGGG-S----------------SCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhHHHHHHHhc-C----------------CCCeEEEecCCCCCHHHHHHHHHHhC
Confidence            9999999998753222212222221 1                14578999999999999999999875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=3.6e-23  Score=148.37  Aligned_cols=156  Identities=19%  Similarity=0.199  Sum_probs=106.6

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      .||+++|.+|||||||+|+|++.......++.+......                                         
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~-----------------------------------------   39 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVI-----------------------------------------   39 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSC-----------------------------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccce-----------------------------------------
Confidence            489999999999999999998765443222222111111                                         


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhh--hHH-HHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCC
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEE--SKS-ELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASC  178 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~--~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (249)
                          ...+...+..+.+|||||......  ... ....++..+..+|++++|+|++++......  .+...+     ...
T Consensus        40 ----~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~--~~~~~~-----~~~  108 (160)
T d1xzpa2          40 ----SEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR--KILERI-----KNK  108 (160)
T ss_dssp             ----CEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH--HHHHHH-----TTS
T ss_pred             ----eEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhh--hhhhhc-----ccc
Confidence                112233456788999999532111  111 123455667889999999999997665543  222221     568


Q ss_pred             cEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          179 PVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       179 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ++++++||+|+.+....+++.+.+..                  ..+++++||++|.|+++|+++|.+.
T Consensus       109 ~~i~~~~k~d~~~~~~~~~~~~~~~~------------------~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         109 RYLVVINKVDVVEKINEEEIKNKLGT------------------DRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             SEEEEEEECSSCCCCCHHHHHHHHTC------------------STTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             cceeeeeeccccchhhhHHHHHHhCC------------------CCcEEEEECCCCCCHHHHHHHHHhc
Confidence            89999999999988777777655442                  2579999999999999999998764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.89  E-value=1.3e-22  Score=151.11  Aligned_cols=117  Identities=11%  Similarity=0.149  Sum_probs=77.9

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      ...+.++|+||+..|.....      ..+..+|.+++|+|+.+.-.-...++.+... ..  ..-.|+++++||+|+.+.
T Consensus        85 ~r~~~iiD~PGH~df~~~~~------~~~~~ad~ailvVda~~gi~~~~t~e~~~~~-~~--~~i~~iIV~vNK~Dl~~~  155 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATML------SGAALMDGAILVVAANEPFPQPQTREHFVAL-GI--IGVKNLIIVQNKVDVVSK  155 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHH------HTSSCCSEEEEEEETTSCSSCHHHHHHHHHH-HH--TTCCCEEEEEECGGGSCH
T ss_pred             eEEEEEeccchHHHHHhhhh------cceeccccccccccccccccchhHHHHHHHH-HH--cCCceeeeccccCCCccc
Confidence            34688999999998876665      6678899999999998853222222222222 22  123588999999999874


Q ss_pred             CCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          193 ASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ..............          .......++++++||++|.|++++++.+.+++
T Consensus       156 ~~~~~~~~~~~~~l----------~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         156 EEALSQYRQIKQFT----------KGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHHHHHHHH----------TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHh----------ccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            22222222222211          01223458999999999999999999988765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=2.9e-23  Score=152.43  Aligned_cols=163  Identities=20%  Similarity=0.207  Sum_probs=103.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCC---CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQ---PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..|+|+|+||||||||+|+|++.+...   ..+|.....+..                                      
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~--------------------------------------   43 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMV--------------------------------------   43 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEE--------------------------------------
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeecee--------------------------------------
Confidence            379999999999999999997654331   111111111111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhH----HHHHHHHhcc
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESK----SELQCLLTDE  173 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~----~~~~~~~~~~  173 (249)
                               .+ .....+.+|||||..+... .......++..+..++.++++++....+......    ..........
T Consensus        44 ---------~~-~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (185)
T d1lnza2          44 ---------ET-DDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL  113 (185)
T ss_dssp             ---------EC-SSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS
T ss_pred             ---------Ee-cCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhh
Confidence                     11 1223578999999643222 2233456667778899999988876643332211    1112222233


Q ss_pred             CCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          174 SLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                      ...++|+++|+||+|+.+.  .+......+.+.               ...+++++||++|.|++++++.|.+.|+
T Consensus       114 ~~~~kp~ivv~NK~Dl~~~--~~~~~~~~~~~~---------------~~~~v~~iSA~~g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         114 RLTERPQIIVANKMDMPEA--AENLEAFKEKLT---------------DDYPVFPISAVTREGLRELLFEVANQLE  172 (185)
T ss_dssp             STTTSCBCBEEECTTSTTH--HHHHHHHHHHCC---------------SCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             hccCCcchhhccccchHhH--HHHHHHHHHHhc---------------cCCcEEEEECCCCCCHHHHHHHHHHhhh
Confidence            4457899999999999763  333444444332               2368999999999999999999988763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=4.1e-23  Score=156.16  Aligned_cols=189  Identities=17%  Similarity=0.194  Sum_probs=106.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCC-CCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP-TLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .|.+.|+|+|+++||||||+|+|++........ ...........  .             . .-.....         +
T Consensus         3 ~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~--~-------------~-~~~~~~~---------~   57 (227)
T d1g7sa4           3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI--P-------------M-DVIEGIC---------G   57 (227)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEE--E-------------H-HHHHHHS---------C
T ss_pred             CCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeecccccc--c-------------c-ccccccc---------c
Confidence            355669999999999999999998754332110 11100000000  0             0 0000000         0


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                        .+  .....+...+..+.++||||+..|.....      ..+..+|++++|+|+.+.-..+..  .+..++..   .+
T Consensus        58 --~~--~~~~~~~~~~~~~~~iDtPGh~~f~~~~~------~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~---~~  122 (227)
T d1g7sa4          58 --DF--LKKFSIRETLPGLFFIDTPGHEAFTTLRK------RGGALADLAILIVDINEGFKPQTQ--EALNILRM---YR  122 (227)
T ss_dssp             --GG--GGGCGGGGTCCEEEEECCCTTSCCTTSBC------SSSBSCSEEEEEEETTTCCCHHHH--HHHHHHHH---TT
T ss_pred             --cc--ccceeecccccccccccccceecccccch------hcccccceEEEEEecccCcccchh--HHHHHhhc---CC
Confidence              00  00112344556789999999988866655      667889999999999875433332  23333333   68


Q ss_pred             CcEEEEEecCCCCCCCCH----------------------HHHHHHhhhcccc-cCcccCCCCCCCCCceeEEEeeeccc
Q psy871          178 CPVLILGNKIDKHGAASE----------------------EEIRQYFGLYGLT-TGKVATPRSEMSGRPIELFMCSVLMR  234 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~----------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~g  234 (249)
                      +|+++++||+|+......                      ..+.+........ .+..............+++++||++|
T Consensus       123 ~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G  202 (227)
T d1g7sa4         123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG  202 (227)
T ss_dssp             CCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred             CeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCC
Confidence            999999999999763211                      0111111111000 00000011111234578999999999


Q ss_pred             cchHHHHHHHhhh
Q psy871          235 QGYGDGFRWLANY  247 (249)
Q Consensus       235 ~gv~~l~~~l~~~  247 (249)
                      .|+++|++.|...
T Consensus       203 ~gid~Ll~~l~~l  215 (227)
T d1g7sa4         203 EGIPELLTMLMGL  215 (227)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999888654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=2.6e-22  Score=148.52  Aligned_cols=98  Identities=15%  Similarity=0.184  Sum_probs=67.4

Q ss_pred             hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccC
Q psy871          135 QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVAT  214 (249)
Q Consensus       135 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  214 (249)
                      .........++++++|+|++++..-...  .+.+++..   .++|+++|+||+|+......++..+..+...        
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~~~~--~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l--------  163 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTL--------  163 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH--------
T ss_pred             hhhhccccchhhhhhhhhcccccccccc--cccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHh--------
Confidence            3445566778999999999875432222  33333333   6799999999999976544444433333221        


Q ss_pred             CCCCCCCCceeEEEeeeccccchHHHHHHHhhhcC
Q psy871          215 PRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYID  249 (249)
Q Consensus       215 ~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  249 (249)
                          ...+..+++++||++|.|+++++++|.+.|+
T Consensus       164 ----~~~~~~~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         164 ----NIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             ----TCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ----cccCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence                1123478999999999999999999998875

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.4e-22  Score=148.89  Aligned_cols=167  Identities=15%  Similarity=0.062  Sum_probs=98.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      +.+||+++|++|||||||+|+|++...............                                         
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~-----------------------------------------   45 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRD-----------------------------------------   45 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC----------------------------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccc-----------------------------------------
Confidence            457999999999999999999987654311100000000                                         


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHH------HhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhcc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSE------LQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDE  173 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~  173 (249)
                          .....+...+..+.++|+||..........      ....+..++.+|++++|+|++.....+..  .+..++.. 
T Consensus        46 ----~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~--~~~~~~~~-  118 (186)
T d1mkya2          46 ----PVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER-  118 (186)
T ss_dssp             -----CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH-
T ss_pred             ----cceeeeccCCceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhhHH--HHHHHHHH-
Confidence                000011122344666777775432222111      12334556789999999999875433322  33333333 


Q ss_pred             CCCCCcEEEEEecCCCCCCC--CHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          174 SLASCPVLILGNKIDKHGAA--SEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       174 ~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                        .+.|+++|+||+|+....  ..+++.+.+....            ......+++++||++|.|+++|++.|.+.+
T Consensus       119 --~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         119 --RGRASVVVFNKWDLVVHREKRYDEFTKLFREKL------------YFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             --TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC------------GGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             --cCCceeeeccchhhhcchhhhhhhHHHHHHHHh------------cccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence              678999999999987532  2344444444322            111236899999999999999999998765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=5.8e-21  Score=142.47  Aligned_cols=173  Identities=24%  Similarity=0.227  Sum_probs=110.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPT  101 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~  101 (249)
                      .+|+++|++|||||||+++|+++++....||.+.....+.                                        
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~----------------------------------------   40 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYK----------------------------------------   40 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEE----------------------------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEE----------------------------------------
Confidence            3799999999999999999999887766666665444431                                        


Q ss_pred             eeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhh-HhhHHHHHHHHhc--cCCCC
Q psy871          102 RRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERF-EESKSELQCLLTD--ESLAS  177 (249)
Q Consensus       102 ~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~--~~~~~  177 (249)
                            ........+.+||++|++.+.. ...      .++..++++++|+|+++...+ ....+++..++..  .....
T Consensus        41 ------~~~~~~~~~~~~d~~g~~~~~~~~~~------~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~  108 (207)
T d2fh5b1          41 ------VNNNRGNSLTLIDLPGHESLRFQLLD------RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS  108 (207)
T ss_dssp             ------CSSTTCCEEEEEECCCCHHHHHHHHH------HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             ------Eeeeeeeeeeeeeccccccccchhhh------hhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcC
Confidence                  1122345688999999887643 233      456789999999999997654 4444455555432  22346


Q ss_pred             CcEEEEEecCCCCCCCCHHHHHHHhhhc----ccccC----------cccCCC--------CCCCCCceeEEEeeecccc
Q psy871          178 CPVLILGNKIDKHGAASEEEIRQYFGLY----GLTTG----------KVATPR--------SEMSGRPIELFMCSVLMRQ  235 (249)
Q Consensus       178 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~----------~~~~~~--------~~~~~~~~~~~~~Sa~~g~  235 (249)
                      +|+++++||+|+......+++.+.++.-    .....          ......        .......+.++++|+++|.
T Consensus       109 ~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~  188 (207)
T d2fh5b1         109 PSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGR  188 (207)
T ss_dssp             CEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC---
T ss_pred             CcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhhcccchhhhHHhccCCcEEEEeeecCCC
Confidence            8999999999999877777766554321    00000          000000        0011134679999999998


Q ss_pred             c------hHHHHHHHhh
Q psy871          236 G------YGDGFRWLAN  246 (249)
Q Consensus       236 g------v~~l~~~l~~  246 (249)
                      |      ++++-+||.+
T Consensus       189 ~~~~~~~i~~~~~wl~~  205 (207)
T d2fh5b1         189 GDTGSADIQDLEKWLAK  205 (207)
T ss_dssp             ----CCBCHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHH
Confidence            7      7888888765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=6.2e-22  Score=146.86  Aligned_cols=166  Identities=21%  Similarity=0.182  Sum_probs=119.3

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      |++||+++|..|||||||++++..+.+. +.||++.....+                                       
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~~---------------------------------------   40 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYPF---------------------------------------   40 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEEE---------------------------------------
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEEE---------------------------------------
Confidence            5789999999999999999999988775 568877544333                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhh----------hHhhHHHHHHH
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRER----------FEESKSELQCL  169 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~----------~~~~~~~~~~~  169 (249)
                                ......+.+||++|++.+...+.      .++..++++++++|.++...          +.+....+..+
T Consensus        41 ----------~~~~~~~~~~d~~g~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  104 (200)
T d2bcjq2          41 ----------DLQSVIFRMVDVGGQRSERRKWI------HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI  104 (200)
T ss_dssp             ----------ECSSCEEEEEECCCSTTGGGGGG------GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             ----------eccceeeeecccccccccccccc------ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHH
Confidence                      12235688999999999998888      88899999999999988643          33334466666


Q ss_pred             HhccCCCCCcEEEEEecCCCCC------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeee
Q psy871          170 LTDESLASCPVLILGNKIDKHG------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSV  231 (249)
Q Consensus       170 ~~~~~~~~~p~ivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  231 (249)
                      +......+.|+++++||+|+..                  ....+....+......       .......+.+.++++||
T Consensus       105 l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~-------~~~~~~~~~~~~~~tSA  177 (200)
T d2bcjq2         105 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFV-------DLNPDSDKIIYSHFTCA  177 (200)
T ss_dssp             HHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHH-------TTCSCTTSCEEEEECCT
T ss_pred             HhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHH-------HhcccCCCceEEEEeEE
Confidence            6666668899999999999743                  1112222222211110       00112234578899999


Q ss_pred             ccccchHHHHHHHhhhc
Q psy871          232 LMRQGYGDGFRWLANYI  248 (249)
Q Consensus       232 ~~g~gv~~l~~~l~~~i  248 (249)
                      ++|.|++++|+.+.+.|
T Consensus       178 k~~~ni~~vF~~i~~~I  194 (200)
T d2bcjq2         178 TDTENIRFVFAAVKDTI  194 (200)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             EcCHhHHHHHHHHHHHH
Confidence            99999999999987654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=3.5e-21  Score=141.02  Aligned_cols=161  Identities=16%  Similarity=0.164  Sum_probs=96.3

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      .|+++|+||||||||+|+|++..+.. .++.+.+....                                          
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~-~~~~g~T~~~~------------------------------------------   38 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRR-GKRPGVTRKII------------------------------------------   38 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSS-SSSTTCTTSCE------------------------------------------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCEeeccc------------------------------------------
Confidence            68999999999999999998765431 11111111111                                          


Q ss_pred             eceeccccccceEEEEEeCCCchhhh--------hhHHH-HhhhhccccccceEEEEEECCChhhhHh---------hHH
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFE--------ESKSE-LQCLLTDESLASSIVFLVDTSDRERFEE---------SKS  164 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~--------~~~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~---------~~~  164 (249)
                           .+...  .+.++||||.....        ..... ...+...++.+|++++|+|+.+......         ...
T Consensus        39 -----~~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~  111 (184)
T d2cxxa1          39 -----EIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDV  111 (184)
T ss_dssp             -----EEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHH
T ss_pred             -----ccccc--cceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHH
Confidence                 01111  25678999953111        11111 1223355678999999999986532211         111


Q ss_pred             HHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhh-hcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHH
Q psy871          165 ELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRW  243 (249)
Q Consensus       165 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  243 (249)
                      .+.+.+..   .++|+++|+||+|+...  .++..+.+. ....          ........++++||++|.|+++++++
T Consensus       112 ~~~~~l~~---~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~----------~~~~~~~~~~~vSA~~g~gi~~L~~~  176 (184)
T d2cxxa1         112 EFYQFLRE---LDIPTIVAVNKLDKIKN--VQEVINFLAEKFEV----------PLSEIDKVFIPISAKFGDNIERLKNR  176 (184)
T ss_dssp             HHHHHHHH---TTCCEEEEEECGGGCSC--HHHHHHHHHHHHTC----------CGGGHHHHEEECCTTTCTTHHHHHHH
T ss_pred             HHHHHHHH---cCCCEEEEEeeeehhhh--HHHHHHHHHHHhcc----------cccccCCeEEEEECCCCCCHHHHHHH
Confidence            23333333   68999999999998753  333333322 2210          01112356899999999999999999


Q ss_pred             Hhhhc
Q psy871          244 LANYI  248 (249)
Q Consensus       244 l~~~i  248 (249)
                      |.+.|
T Consensus       177 i~~~l  181 (184)
T d2cxxa1         177 IFEVI  181 (184)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98865

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.85  E-value=1.9e-21  Score=142.87  Aligned_cols=177  Identities=15%  Similarity=0.098  Sum_probs=107.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      ++.+|+++|++++|||||+++|++.......                        ...........     ..+.. ..+
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~------------------------~~~~~~~~~~~-----~~~Er-~rg   51 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGG------------------------AKFKKYEEIDN-----APEER-ARG   51 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTS------------------------BCCCCHHHHHS-----CCEEE-ETT
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCc------------------------chhhhhhhccc-----chhhc-CCC
Confidence            5689999999999999999999742110000                        00000000000     00000 111


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                      .+.......+...+..+.++|+||+..|.....      +.+..+|++++|+|+.+.-.-+.. +.+......   ...|
T Consensus        52 iTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~------~~~~~aD~allVVda~~G~~~QT~-~~~~~a~~~---~~~~  121 (196)
T d1d2ea3          52 ITINAAHVEYSTAARHYAHTDCPGHADYVKNMI------TGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI---GVEH  121 (196)
T ss_dssp             EEEECEEEEEECSSCEEEEEECSSHHHHHHHHH------HTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCC
T ss_pred             ccCCcceEEEEeceeeEEeecCcchHHHHHHHH------HHHhhcCeEEEEEEcCCCCchhHH-HHHHHHHHh---cCCc
Confidence            122223334455567899999999998876665      777899999999999985333322 222222221   3467


Q ss_pred             EEEEEecCCCCCCCC-HH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc----------cchHHHHHHH
Q psy871          180 VLILGNKIDKHGAAS-EE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR----------QGYGDGFRWL  244 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g----------~gv~~l~~~l  244 (249)
                      +|+++||+|+..... .+    ++..++..+.            .....++++++||++|          .|+.+|++.+
T Consensus       122 iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~------------~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai  189 (196)
T d1d2ea3         122 VVVYVNKADAVQDSEMVELVELEIRELLTEFG------------YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAV  189 (196)
T ss_dssp             EEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT------------SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHH
T ss_pred             EEEEEecccccccHHHHHHHHHHHHHHHHHhC------------CCcccCEEEEEEccccccccCcccccCCHHHHHHHH
Confidence            899999999975311 12    2333333332            2234578999999999          5899999888


Q ss_pred             hhhc
Q psy871          245 ANYI  248 (249)
Q Consensus       245 ~~~i  248 (249)
                      .+++
T Consensus       190 ~~~i  193 (196)
T d1d2ea3         190 DTYI  193 (196)
T ss_dssp             HHHS
T ss_pred             HhhC
Confidence            7764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=3e-20  Score=137.03  Aligned_cols=163  Identities=18%  Similarity=0.157  Sum_probs=113.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      |++||+++|..|||||||+++|....+.    |.+....                                         
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~----t~~~~~~-----------------------------------------   35 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEA----GTGIVET-----------------------------------------   35 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSC----CCSEEEE-----------------------------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC----CccEEEE-----------------------------------------
Confidence            5789999999999999999999754332    2221111                                         


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhH----------hhHHHHHHH
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFE----------ESKSELQCL  169 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~----------~~~~~~~~~  169 (249)
                              .+......+.+||++|++.+...+.      .++..++++++|+|.++.+++.          .....+..+
T Consensus        36 --------~~~~~~~~~~i~D~~Gq~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i  101 (195)
T d1svsa1          36 --------HFTFKDLHFKMFDVGGQRSERKKWI------HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI  101 (195)
T ss_dssp             --------EEEETTEEEEEEEECCSGGGGGGGG------GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             --------EEEeeeeeeeeeccccccccccchh------hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHH
Confidence                    1223356789999999999999998      8899999999999999887663          223345555


Q ss_pred             HhccCCCCCcEEEEEecCCCCC-----------------CCCHHHHHHHhhh-cccccCcccCCCCCCCCCceeEEEeee
Q psy871          170 LTDESLASCPVLILGNKIDKHG-----------------AASEEEIRQYFGL-YGLTTGKVATPRSEMSGRPIELFMCSV  231 (249)
Q Consensus       170 ~~~~~~~~~p~ivv~nK~Dl~~-----------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa  231 (249)
                      +........|+++++||+|+..                 .....+....... +..       .......+.+.+++|||
T Consensus       102 ~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-------~~~~~~~~~~~~~~tSA  174 (195)
T d1svsa1         102 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFED-------LNKRKDTKEIYTHFTCA  174 (195)
T ss_dssp             HTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHT-------TCSCTTTCCEEEEECCT
T ss_pred             hcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHH-------HhcccCCCcceeEEEEe
Confidence            6555667899999999999632                 1122222221111 110       00112335578999999


Q ss_pred             ccccchHHHHHHHhhhc
Q psy871          232 LMRQGYGDGFRWLANYI  248 (249)
Q Consensus       232 ~~g~gv~~l~~~l~~~i  248 (249)
                      ++|.|++++|+.+.+.|
T Consensus       175 ~~~~nv~~~F~~v~~~i  191 (195)
T d1svsa1         175 TDTKNVQFVFDAVTDVI  191 (195)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             ECCHhHHHHHHHHHHHH
Confidence            99999999999987754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.3e-20  Score=139.80  Aligned_cols=166  Identities=17%  Similarity=0.218  Sum_probs=107.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLH   99 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~   99 (249)
                      |.+||+++|.+|||||||++++..  .....||+|.....+                                       
T Consensus         1 r~iKivllG~~~vGKTsll~r~~f--~~~~~pTiG~~~~~~---------------------------------------   39 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMRI--IHGQDPTKGIHEYDF---------------------------------------   39 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH--HHSCCCCSSEEEEEE---------------------------------------
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc--CCCCCCeeeeEEEEE---------------------------------------
Confidence            457999999999999999999942  224556666433332                                       


Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhh----------hHhhHHHHHHH
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRER----------FEESKSELQCL  169 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~----------~~~~~~~~~~~  169 (249)
                                ......+.+||++|++.+...+.      .++..++++++++|.++...          +.....++..+
T Consensus        40 ----------~~~~~~~~~~D~~gq~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  103 (200)
T d1zcba2          40 ----------EIKNVPFKMVDVGGQRSERKRWF------ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI  103 (200)
T ss_dssp             ----------EETTEEEEEEEECC-------CT------TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHH
T ss_pred             ----------eeeeeeeeeecccceeeeccccc------ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHH
Confidence                      22345688999999988877777      77788999999999987533          34444566677


Q ss_pred             HhccCCCCCcEEEEEecCCCCC------------------CCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeee
Q psy871          170 LTDESLASCPVLILGNKIDKHG------------------AASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSV  231 (249)
Q Consensus       170 ~~~~~~~~~p~ivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  231 (249)
                      +......+.|+++++||+|+.+                  ....++..++........      ......+.+.++++||
T Consensus       104 ~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~------~~~~~~~~iy~~~TsA  177 (200)
T d1zcba2         104 VNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGK------RRDQQQRPLYHHFTTA  177 (200)
T ss_dssp             HTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTT------CSSCC--CCEEEECCT
T ss_pred             hhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHh------ccCCCCCceEEEEeee
Confidence            7766678999999999999743                  122233333332211000      0112234467888999


Q ss_pred             ccccchHHHHHHHhhhc
Q psy871          232 LMRQGYGDGFRWLANYI  248 (249)
Q Consensus       232 ~~g~gv~~l~~~l~~~i  248 (249)
                      +++.|++++|+.+.+.|
T Consensus       178 ~d~~ni~~vf~~v~d~i  194 (200)
T d1zcba2         178 INTENIRLVFRDVKDTI  194 (200)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             eCcHHHHHHHHHHHHHH
Confidence            99999999999877643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.83  E-value=1.1e-19  Score=135.81  Aligned_cols=108  Identities=14%  Similarity=0.198  Sum_probs=73.5

Q ss_pred             ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecC
Q psy871          109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKI  187 (249)
Q Consensus       109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~  187 (249)
                      +...+..+.++|+||+..|.....      +....+|++++|+|+.....-+..+ .+ .++..   .++| ++++.||+
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~------~g~~~aD~ailVvda~~G~~~Qt~e-~~-~~~~~---~gv~~iiv~vNK~  152 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMA------TGASTCDLAIILVDARYGVQTQTRR-HS-YIASL---LGIKHIVVAINKM  152 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHH------HHHTTCSEEEEEEETTTCSCHHHHH-HH-HHHHH---TTCCEEEEEEECT
T ss_pred             EeccceEEEEEeccchhhhhhhhc------cccccCceEEEEeccccCcccchHH-HH-HHHHH---cCCCEEEEEEEcc
Confidence            344567799999999999977776      6778999999999998854333322 22 22222   5655 88999999


Q ss_pred             CCCCCCC------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          188 DKHGAAS------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       188 Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      |+++...      .+++..+++...            +....++++|+||++|.|+.+
T Consensus       153 D~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         153 DLNGFDERVFESIKADYLKFAEGIA------------FKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHTTT------------CCCSEEEEEECCTTTCTTTSS
T ss_pred             ccccccceehhhhHHHHhhhhHhhc------------cCCCceEEEEEEcccCccCCc
Confidence            9986311      123333333332            334568899999999999843

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3.5e-20  Score=137.26  Aligned_cols=163  Identities=16%  Similarity=0.203  Sum_probs=95.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCC-CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ-PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      +++++|+++|++++|||||+++|+...-.. ...+..                       .....      ...++. ..
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~-----------------------~~~~~------d~~~eE-~~   50 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVK-----------------------DYGDI------DKAPEE-RA   50 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCC-----------------------CHHHH------SCSHHH-HH
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchh-----------------------hhhhc------ccchHH-hc
Confidence            357899999999999999999996321000 000000                       00000      000000 01


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLAS  177 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  177 (249)
                      .+.+.......+...+..+.++||||+..|.....      +.+..+|++++|+|+.+.-..+..+ .+.. +..   .+
T Consensus        51 rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~~------~~~~~aD~avlVvda~~Gv~~qt~~-~~~~-~~~---~g  119 (204)
T d2c78a3          51 RGITINTAHVEYETAKRHYSHVDCPGHADYIKNMI------TGAAQMDGAILVVSAADGPMPQTRE-HILL-ARQ---VG  119 (204)
T ss_dssp             HTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHH------HHHTTCSSEEEEEETTTCCCHHHHH-HHHH-HHH---TT
T ss_pred             CCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHHHH------HHHHHCCEEEEEEECCCCCcHHHHH-HHHH-HHH---cC
Confidence            11222222234445567899999999998877665      7778999999999998865544432 2222 222   57


Q ss_pred             Cc-EEEEEecCCCCCCCC-HH----HHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccc
Q psy871          178 CP-VLILGNKIDKHGAAS-EE----EIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMR  234 (249)
Q Consensus       178 ~p-~ivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  234 (249)
                      +| +++++||+|+.+... .+    ++.+.+....            +....+++++.||..+
T Consensus       120 i~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~------------~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         120 VPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE------------FPGDEVPVIRGSALLA  170 (204)
T ss_dssp             CCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT------------SCTTTSCEEECCHHHH
T ss_pred             CCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcC------------CCcccceeeeeechhh
Confidence            66 677899999976311 12    2233333222            2234478899999754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.8e-18  Score=124.71  Aligned_cols=161  Identities=16%  Similarity=0.156  Sum_probs=95.8

Q ss_pred             eEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccce
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTR  102 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~  102 (249)
                      .|+++|.+|||||||+|+|++...........                                             .+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~---------------------------------------------t~~   41 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ---------------------------------------------TTR   41 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSS---------------------------------------------CCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCC---------------------------------------------ceE
Confidence            48999999999999999998765331110000                                             000


Q ss_pred             eceeccccccceEEEEEeCCCchhhhhhH--HHH-hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          103 RVWKDYFPAVDAIVFLVDTSDRERFEESK--SEL-QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~v~D~~g~~~~~~~~--~~~-~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                      .............+..+|+++........  ... .........+++++++.|..+.......  ....+ ..   ...|
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~--~~~~l-~~---~~~~  115 (179)
T d1egaa1          42 HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEM--VLNKL-RE---GKAP  115 (179)
T ss_dssp             SCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHH--HHHHH-HS---SSSC
T ss_pred             EEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccchhHHH--HHHHh-hh---ccCc
Confidence            01111122234456678888754322221  111 1122334567788888888764332221  22222 22   5789


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          180 VLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       180 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      .++++||+|+...  ..++........            ......+++++||++|+|+++|++.|.++|
T Consensus       116 ~i~v~~k~d~~~~--~~~~~~~~~~~~------------~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         116 VILAVNKVDNVQE--KADLLPHLQFLA------------SQMNFLDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             EEEEEESTTTCCC--HHHHHHHHHHHH------------TTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             eeeeeeeeeccch--hhhhhhHhhhhh------------hhcCCCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            9999999998764  444444344333            122346899999999999999999999876

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=8.8e-19  Score=131.61  Aligned_cols=117  Identities=18%  Similarity=0.244  Sum_probs=89.4

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccC
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVP   96 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~   96 (249)
                      +.++.+||+++|+.|||||||++++..+++   .||+|.....+                                    
T Consensus         2 ~~k~~~KilllG~~~vGKTsll~~~~~~~~---~pTiG~~~~~~------------------------------------   42 (221)
T d1azta2           2 VYRATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGIFETKF------------------------------------   42 (221)
T ss_dssp             HHHHSEEEEEECSTTSSHHHHHHHHHHHHC---CCCCSCEEEEE------------------------------------
T ss_pred             cchhcCEEEEECCCCCCHHHHHHHHhcCCc---CCCCCeEEEEE------------------------------------
Confidence            345678999999999999999999975543   35665333322                                    


Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh----------hhHhhHHHH
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE----------RFEESKSEL  166 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------~~~~~~~~~  166 (249)
                                   ...+..+.+||++|++.+...+.      .++..++++++++|.++.+          ...+...++
T Consensus        43 -------------~~~~~~~~~~D~~Gq~~~r~~w~------~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~  103 (221)
T d1azta2          43 -------------QVDKVNFHMFDVGGQRDERRKWI------QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF  103 (221)
T ss_dssp             -------------EETTEEEEEEECCCSTTTTTGGG------GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHH
T ss_pred             -------------EECcEEEEEEecCccceeccchh------hhcccccceEEEEEccccccccccccchHHHHHHHHHH
Confidence                         12245688999999998888887      7788999999999998743          334445567


Q ss_pred             HHHHhccCCCCCcEEEEEecCCCCC
Q psy871          167 QCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       167 ~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      ..++......++|++|++||+|+.+
T Consensus       104 ~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2         104 KSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             HHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             HHHhcChhhCCCcEEEEechhhhhh
Confidence            7778777778899999999999854

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.9e-17  Score=123.17  Aligned_cols=125  Identities=21%  Similarity=0.240  Sum_probs=81.7

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCccc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHP  100 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~  100 (249)
                      +++|+|+|+||||||||+|+|+++++....+ ....                                            
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~tt-~~~~--------------------------------------------   37 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEP--------------------------------------------   37 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSC--------------------------------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCeEE-ecce--------------------------------------------
Confidence            6799999999999999999999876542111 1100                                            


Q ss_pred             ceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC-hhhhHhhHHHHHHH---HhccCCC
Q psy871          101 TRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD-RERFEESKSELQCL---LTDESLA  176 (249)
Q Consensus       101 ~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~---~~~~~~~  176 (249)
                           ...+...+..+.+||+||++.+.....  ..+......++.+++++|+.+ ..++.....++...   .......
T Consensus        38 -----~~~~~~~~~~~~l~D~~g~~~~~~~~~--~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~  110 (209)
T d1nrjb_          38 -----LSAADYDGSGVTLVDFPGHVKLRYKLS--DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN  110 (209)
T ss_dssp             -----EEETTGGGSSCEEEECCCCGGGTHHHH--HHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTT
T ss_pred             -----EEEEEeCCeEEEEEecccccchhhHHH--HHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhc
Confidence                 011122234578999999886654433  223345567789999999875 44455544444332   3344447


Q ss_pred             CCcEEEEEecCCCCCCCCHHH
Q psy871          177 SCPVLILGNKIDKHGAASEEE  197 (249)
Q Consensus       177 ~~p~ivv~nK~Dl~~~~~~~~  197 (249)
                      ++|+++|+||+|+.+....+.
T Consensus       111 ~~piiiv~NK~D~~~~~~~~~  131 (209)
T d1nrjb_         111 GIDILIACNKSELFTARPPSK  131 (209)
T ss_dssp             CCCEEEEEECTTSTTCCCHHH
T ss_pred             cCCeEEEEEeecccccCcHHH
Confidence            899999999999987655443

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.3e-17  Score=121.80  Aligned_cols=90  Identities=17%  Similarity=0.152  Sum_probs=54.8

Q ss_pred             cccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhh-hcccccCcccCCCCCCC
Q psy871          142 SLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFG-LYGLTTGKVATPRSEMS  220 (249)
Q Consensus       142 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  220 (249)
                      ...+.++.+.+.......... ..+.... .   ...++++++||+|+.+..........++ .+.            ..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~------------~~  159 (188)
T d1puia_          97 QSLQGLVVLMDIRHPLKDLDQ-QMIEWAV-D---SNIAVLVLLTKADKLASGARKAQLNMVREAVL------------AF  159 (188)
T ss_dssp             TTEEEEEEEEETTSCCCHHHH-HHHHHHH-H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG------------GG
T ss_pred             hheeEEEEeecccccchhHHH-HHHHHhh-h---ccccccchhhhhhccCHHHHHHHHHHHHHHHH------------hh
Confidence            344555566666554333222 1333332 2   6789999999999987433322222222 111            11


Q ss_pred             CCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          221 GRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       221 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ....+++++||++|.|+++|++.|.+++
T Consensus       160 ~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         160 NGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            1347899999999999999999998865

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.73  E-value=2.8e-18  Score=130.23  Aligned_cols=112  Identities=15%  Similarity=0.155  Sum_probs=62.9

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChh---hh---HhhHHHHHHHHhccCCCCCc-EEE
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRE---RF---EESKSELQCLLTDESLASCP-VLI  182 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-~iv  182 (249)
                      ...+..+.++|+||+..|.....      +....+|++++|+|+.+..   ++   ....+.+... ..   .++| +++
T Consensus        98 ~~~~~~i~~iDtPGH~df~~~~~------~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~~---~~i~~iiv  167 (245)
T d1r5ba3          98 ETEHRRFSLLDAPGHKGYVTNMI------NGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVV  167 (245)
T ss_dssp             ECSSEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEE
T ss_pred             ccccceeeeecccccccchhhhh------hhhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-HH---cCCCeEEE
Confidence            34456799999999999887777      7778999999999998742   11   1122222222 22   4554 779


Q ss_pred             EEecCCCCCCC-CHHHH-------HHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHH
Q psy871          183 LGNKIDKHGAA-SEEEI-------RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGF  241 (249)
Q Consensus       183 v~nK~Dl~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  241 (249)
                      ++||+|+.... ..+.+       ..+++.+..          ......++++|+||++|+|+.+++
T Consensus       168 ~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~----------~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         168 VINKMDEPSVQWSEERYKECVDKLSMFLRRVAG----------YNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             EEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHC----------CCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             EEEcCCCCccchhHHHHHHHHHHHHHHHHHHhC----------cCcccCCEEEEeeccCCCCcccch
Confidence            99999997532 22222       222222210          001124789999999999998753

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.9e-18  Score=130.48  Aligned_cols=184  Identities=15%  Similarity=0.076  Sum_probs=102.8

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      .+++++|+++|++++|||||+.+|+...-.....+........         .-.+......+.++..+....      .
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~D~~~~Er------~   67 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA---------AELGKGSFKYAWVLDKLKAER------E   67 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHG---------GGGSSSCCCHHHHHHHHHHHH------H
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHH---------HHhcCCccceeeecccchhhh------c
Confidence            3556799999999999999999996321110000000000000         000001111222222222110      1


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhh---h---HhhHHHHHHHHh
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRER---F---EESKSELQCLLT  171 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~  171 (249)
                      .+.+.......+...+..+.++|+|||..|.....      +....+|++++|+|+.....   +   ....+.+... .
T Consensus        68 rGiTi~~~~~~~~~~~~~i~iiDtPGH~df~~~~~------~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~-~  140 (239)
T d1f60a3          68 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMI------TGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-F  140 (239)
T ss_dssp             TTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHH------HSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-H
T ss_pred             ceeccccceeEeccCCEEEEEEECCCcHHHHHHHH------HHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHH-H
Confidence            11122222233444567899999999999987777      78899999999999987421   1   1122222222 2


Q ss_pred             ccCCCCCc-EEEEEecCCCCCCCC------HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchH
Q psy871          172 DESLASCP-VLILGNKIDKHGAAS------EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYG  238 (249)
Q Consensus       172 ~~~~~~~p-~ivv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  238 (249)
                      .   .++| +++++||+|+.+...      .+++..++....            .....++++++||..|.|+.
T Consensus       141 ~---~gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~------------~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         141 T---LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVG------------YNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             H---TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHT------------CCGGGCCEEECCTTTCBTTT
T ss_pred             H---cCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcC------------CCCCcEEEEEEEccCCCcce
Confidence            2   5665 788999999986321      133344444333            22334789999999998873

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=1.2e-18  Score=130.93  Aligned_cols=114  Identities=11%  Similarity=0.152  Sum_probs=71.8

Q ss_pred             ccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhh---h---HhhHHHHHHHHhccCCCCCcEEE
Q psy871          109 FPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRER---F---EESKSELQCLLTDESLASCPVLI  182 (249)
Q Consensus       109 ~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p~iv  182 (249)
                      ++..+..+.++|||||..|.....      ..+..+|+.++|+|+.+...   +   ....+.+... ..  ..-.++++
T Consensus        76 ~~~~~~~i~iiDtPGH~df~~~~~------~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~--~~~~~iIv  146 (224)
T d1jnya3          76 FETKKYFFTIIDAPGHRDFVKNMI------TGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KT--MGLDQLIV  146 (224)
T ss_dssp             EECSSCEEEECCCSSSTTHHHHHH------HTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HH--TTCTTCEE
T ss_pred             EecCCceeEEeeCCCcHHHHHHHH------HHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HH--hCCCceEE
Confidence            445567899999999999988887      77889999999999998421   1   1122122111 11  13356888


Q ss_pred             EEecCCCCCC-CCHHHH---HHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          183 LGNKIDKHGA-ASEEEI---RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       183 v~nK~Dl~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      +.||+|+... ...+.+   ...+..+....        ......++++++||.+|.|+.+
T Consensus       147 ~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~--------~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         147 AVNKMDLTEPPYDEKRYKEIVDQVSKFMRSY--------GFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             EEECGGGSSSTTCHHHHHHHHHHHHHHHHHT--------TCCCTTCEEEECBTTTTBTTTB
T ss_pred             EEEcccCCCccccHHHHHHHHHHHHhHHHhc--------CCCcccCeEEEEEccCCCCccc
Confidence            9999999752 232222   22222211000        0233458899999999999853

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=4.6e-17  Score=124.54  Aligned_cols=75  Identities=16%  Similarity=0.174  Sum_probs=57.4

Q ss_pred             ccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEec
Q psy871          107 DYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK  186 (249)
Q Consensus       107 ~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  186 (249)
                      ..+...+..+.++||||+..|.....      ..+..+|+.++|+|+.+.-..+... .| +....   .++|.++++||
T Consensus        64 ~~~~~~~~~~n~iDtPG~~dF~~e~~------~~l~~~D~avlVvda~~Gv~~~T~~-~w-~~a~~---~~lP~i~fINK  132 (276)
T d2bv3a2          64 TTCFWKDHRINIIDAPGHVDFTIEVE------RSMRVLDGAIVVFDSSQGVEPQSET-VW-RQAEK---YKVPRIAFANK  132 (276)
T ss_dssp             EEEEETTEEEEEECCCSSSSCSTTHH------HHHHHCCEEEEEEETTTSSCHHHHH-HH-HHHHT---TTCCEEEEEEC
T ss_pred             eeeccCCeEEEEecCCchhhhHHHHH------HHHHhhhheEEeccccCCcchhHHH-HH-HHHHH---cCCCEEEEEec
Confidence            33455677899999999999987777      6678899999999999965444432 22 33233   79999999999


Q ss_pred             CCCCCC
Q psy871          187 IDKHGA  192 (249)
Q Consensus       187 ~Dl~~~  192 (249)
                      +|....
T Consensus       133 mDr~~a  138 (276)
T d2bv3a2         133 MDKTGA  138 (276)
T ss_dssp             TTSTTC
T ss_pred             cccccc
Confidence            998764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.71  E-value=1.6e-16  Score=121.29  Aligned_cols=70  Identities=16%  Similarity=0.172  Sum_probs=53.4

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      ...+..+.++||||+..|.....      ..+..+|++++|+|+.+.-..+... .++ ....   .++|.++++||+|.
T Consensus        63 ~~~~~~~n~iDtPGh~dF~~e~~------~al~~~D~avlvvda~~Gv~~~t~~-~~~-~~~~---~~~p~~i~iNk~D~  131 (267)
T d2dy1a2          63 LFRGHRVFLLDAPGYGDFVGEIR------GALEAADAALVAVSAEAGVQVGTER-AWT-VAER---LGLPRMVVVTKLDK  131 (267)
T ss_dssp             EETTEEEEEEECCCSGGGHHHHH------HHHHHCSEEEEEEETTTCSCHHHHH-HHH-HHHH---TTCCEEEEEECGGG
T ss_pred             cccccceeEEccCchhhhhhhhh------hhhcccCceEEEeeccCCccchhHH-HHH-hhhh---cccccccccccccc
Confidence            34466799999999999987777      6778899999999999854444332 233 3333   68999999999997


Q ss_pred             C
Q psy871          190 H  190 (249)
Q Consensus       190 ~  190 (249)
                      .
T Consensus       132 ~  132 (267)
T d2dy1a2         132 G  132 (267)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.6e-17  Score=129.52  Aligned_cols=109  Identities=15%  Similarity=0.178  Sum_probs=67.7

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+..++++.|.|.......         ....+|.+++|+++...+..+.+...+.++         +-++|+||+|+..
T Consensus       145 ~g~d~iliEtvG~gq~e~~---------i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~VvNKaD~~~  206 (327)
T d2p67a1         145 AGYDVVIVETVGVGQSETE---------VARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIVINKDDGDN  206 (327)
T ss_dssp             TTCSEEEEEEECCTTHHHH---------HHTTCSEEEEEECC------CCCCHHHHHH---------CSEEEECCCCTTC
T ss_pred             cCCCeEEEeeccccccchh---------hhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEEEEeecccc
Confidence            3445777888775433222         236799999999998887777665555544         4489999999876


Q ss_pred             CCC----HHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          192 AAS----EEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       192 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...    ..+....++...          .....+..+++.|||++|.|++++++.|.++.
T Consensus       207 ~~~~~~~~~~~~~al~~~~----------~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         207 HTNVAIARHMYESALHILR----------RKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHSC----------CSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhcc----------cCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            311    223333333322          11234557899999999999999999998754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.62  E-value=4.7e-17  Score=123.88  Aligned_cols=131  Identities=15%  Similarity=0.065  Sum_probs=74.2

Q ss_pred             ceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCCh---hhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          113 DAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDR---ERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      +..+.++|+||+..+.........+... ...+++++++|+...   ..+............   ....|.++++||+|+
T Consensus        94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~-~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~---~~~~~~ivvinK~D~  169 (244)
T d1yrba1          94 ENDYVLIDTPGQMETFLFHEFGVRLMEN-LPYPLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDL  169 (244)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHT-SSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGG
T ss_pred             ccceeeeccccchhHHHHHHHHHHHHhh-ccCceEEEEeccccccCchhHhhHHHHHHHHHH---HhCCCceeeeecccc
Confidence            3458899999998876666554444433 346688899998653   332222111111111   147899999999999


Q ss_pred             CCCCCHHHHHHHhhhcccccCc---ccC----------CCCCCCCCceeEEEeeeccccchHHHHHHHhhh
Q psy871          190 HGAASEEEIRQYFGLYGLTTGK---VAT----------PRSEMSGRPIELFMCSVLMRQGYGDGFRWLANY  247 (249)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~---~~~----------~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  247 (249)
                      ......+...............   ...          .........++++++||++|+|+++++..|.++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         170 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            8742222222111111000000   000          000001134789999999999999999998774

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.61  E-value=2e-16  Score=124.28  Aligned_cols=111  Identities=15%  Similarity=0.112  Sum_probs=69.4

Q ss_pred             cccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCC
Q psy871          110 PAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDK  189 (249)
Q Consensus       110 ~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  189 (249)
                      +..+..++++.|.|.........         ..+|..++|+.+...+..+.+..-+.+         .+-++|+||+|+
T Consensus       140 ~~~g~d~iiiETVG~gq~e~~~~---------~~~D~~v~v~~p~~GD~iQ~~k~gilE---------~aDi~vvNKaD~  201 (323)
T d2qm8a1         140 EAAGFDVILVETVGVGQSETAVA---------DLTDFFLVLMLPGAGDELQGIKKGIFE---------LADMIAVNKADD  201 (323)
T ss_dssp             HHTTCCEEEEEECSSSSCHHHHH---------TTSSEEEEEECSCC------CCTTHHH---------HCSEEEEECCST
T ss_pred             ccCCCCeEEEeehhhhhhhhhhh---------cccceEEEEeeccchhhhhhhhhhHhh---------hhheeeEecccc
Confidence            34456688888888554333333         569999999999988766654333333         466999999998


Q ss_pred             CCCCCH-HHH----HHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHHHHHHHhhhc
Q psy871          190 HGAASE-EEI----RQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGDGFRWLANYI  248 (249)
Q Consensus       190 ~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i  248 (249)
                      ...... .+.    ...+....          .....+..+++.+||++|.|++++++++.++.
T Consensus       202 ~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         202 GDGERRASAAASEYRAALHILT----------PPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTBC----------CSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhhccc----------ccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            764221 112    22222221          12334557899999999999999999998753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=8.2e-15  Score=118.73  Aligned_cols=172  Identities=11%  Similarity=-0.011  Sum_probs=90.1

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcCCCCC--CCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccccc
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ--PVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV   95 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~   95 (249)
                      ...+.+|+|+|.+|||||||+|+|++.....  ..++ +..                                       
T Consensus        53 ~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~-g~~---------------------------------------   92 (400)
T d1tq4a_          53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT-GVV---------------------------------------   92 (400)
T ss_dssp             HHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCC-CC----------------------------------------
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCC-CCC---------------------------------------
Confidence            3557899999999999999999999754321  1111 000                                       


Q ss_pred             CCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCC
Q psy871           96 PTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESL  175 (249)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  175 (249)
                         ..+......... ....+.+|||||........+.... ......+|+++++.|..-.  -.+.  .+...+..   
T Consensus        93 ---~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~-~~~~~~~d~~l~~~~~~~~--~~d~--~l~~~l~~---  160 (400)
T d1tq4a_          93 ---EVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLE-KMKFYEYDFFIIISATRFK--KNDI--DIAKAISM---  160 (400)
T ss_dssp             ------CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHH-HTTGGGCSEEEEEESSCCC--HHHH--HHHHHHHH---
T ss_pred             ---CCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHH-HhhhhcceEEEEecCCCCC--HHHH--HHHHHHHH---
Confidence               000000000011 1123779999997654322221111 1224567777777664321  1221  23333333   


Q ss_pred             CCCcEEEEEecCCCCC---------CCCHHHHHHHhh-hcccccCcccCCCCCCCCCceeEEEeeecc--ccchHHHHHH
Q psy871          176 ASCPVLILGNKIDKHG---------AASEEEIRQYFG-LYGLTTGKVATPRSEMSGRPIELFMCSVLM--RQGYGDGFRW  243 (249)
Q Consensus       176 ~~~p~ivv~nK~Dl~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--g~gv~~l~~~  243 (249)
                      .++|+++|.||+|...         ....++..+.++ .+....       ........++|.+|+..  .+|++++.+.
T Consensus       161 ~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l-------~~~~~~~~~vflvS~~~~~~~d~~~L~~~  233 (400)
T d1tq4a_         161 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF-------RENGIAEPPIFLLSNKNVCHYDFPVLMDK  233 (400)
T ss_dssp             TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH-------HHTTCSSCCEEECCTTCTTSTTHHHHHHH
T ss_pred             cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHH-------HHcCCCCCCEEEecCCcccccCHHHHHHH
Confidence            6899999999999631         112222211111 100000       00112335788898754  5689999999


Q ss_pred             Hhhhc
Q psy871          244 LANYI  248 (249)
Q Consensus       244 l~~~i  248 (249)
                      +.+.+
T Consensus       234 l~~~L  238 (400)
T d1tq4a_         234 LISDL  238 (400)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            87765

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=1.4e-13  Score=107.33  Aligned_cols=105  Identities=18%  Similarity=0.203  Sum_probs=68.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCC---C-CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRL---A-QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQP   94 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~---~-~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~   94 (249)
                      ...++|+++|.||||||||+|+|++...   . ++++|+.+..+.+.++..  +          -..+..-+        
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~--r----------~~~l~~~~--------   67 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE--R----------FDWLCEAY--------   67 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH--H----------HHHHHHHH--------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEecccc--c----------hhhhhhcc--------
Confidence            3557999999999999999999997653   2 788899988888743200  0          00000000        


Q ss_pred             cCCcccceeceeccccccceEEEEEeCCCchh-hhhhHHHHhhhhccccccceEEEEEECCC
Q psy871           95 VPTLHPTRRVWKDYFPAVDAIVFLVDTSDRER-FEESKSELQCLLTDESLASSIVFLVDTSD  155 (249)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~-~~~~~~~~~~~~~~~~~~d~ii~v~d~~~  155 (249)
                        .   .     .  ......+.++|.||... .......+.+++..++.+|++++|+|+.+
T Consensus        68 --~---~-----~--~~~~~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          68 --K---P-----K--SRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             --C---C-----S--EEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             --c---C-----C--ceecccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence              0   0     0  01234577889988543 23333445678888899999999998754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=6.8e-13  Score=102.40  Aligned_cols=102  Identities=19%  Similarity=0.170  Sum_probs=68.8

Q ss_pred             cceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPT   97 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~   97 (249)
                      ..+|++||.|+||||||+|+|++....   ++++|+.+..+.+.++..             .-.-+..+.+.        
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~-------------r~~~l~~~~~~--------   60 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP-------------RLDALAEIVKP--------   60 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH-------------HHHHHHHHHCC--------
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccH-------------hHHHHHHhcCC--------
Confidence            369999999999999999999988754   688999999998843210             00001111100        


Q ss_pred             cccceeceeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECC
Q psy871           98 LHPTRRVWKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTS  154 (249)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~  154 (249)
                       .          ......+.++|.||...-.+ -...+.+|+++++++|++++|+|+.
T Consensus        61 -~----------~~~~a~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          61 -E----------RILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             -S----------EEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             -C----------ceeeeeEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeecc
Confidence             0          11134578999999654333 3345678999999999999999873

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1.9e-13  Score=107.42  Aligned_cols=114  Identities=15%  Similarity=0.120  Sum_probs=71.5

Q ss_pred             cceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q psy871          112 VDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       112 ~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  191 (249)
                      .+..+.++||||+..|.....      ..+..+|++++|+|+.+.-..+... .+.....    .++|+++++||+|...
T Consensus        94 ~~~~inliDtPGh~dF~~ev~------~al~~~D~allVVda~eGv~~qT~~-~~~~a~~----~~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVT------AALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVINKVDRAL  162 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHH------HHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEEECHHHHH
T ss_pred             cceEEEEEcCCCcHHHHHHHH------HHHhhcCceEEEEecccCcchhHHH-HHHHHHH----cCCCeEEEEECccccc
Confidence            455688999999999987777      6678899999999999965555432 3333332    6899999999999743


Q ss_pred             ---CCCHHHHHHHhhhccccc-------CcccCCCCCCCCCceeEEEeeeccccc
Q psy871          192 ---AASEEEIRQYFGLYGLTT-------GKVATPRSEMSGRPIELFMCSVLMRQG  236 (249)
Q Consensus       192 ---~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~g~g  236 (249)
                         ....+++.+.+...-..-       ................+.+.||+.|.+
T Consensus       163 ~el~~~~~~~~~~l~~~i~~vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~~  217 (341)
T d1n0ua2         163 LELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWA  217 (341)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEE
T ss_pred             ccHHhhHHHHHHHHcCccccccceeeecccccccccccCcccCceEecccccCeE
Confidence               334555544443211000       000000001222334589999998754

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=2.4e-13  Score=107.19  Aligned_cols=108  Identities=19%  Similarity=0.141  Sum_probs=52.3

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCCCC---CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDRLA---QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      .+|+++|.||||||||+|+|++.+..   ++++|+.+..+....- ...++...                        ..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~-~~~~~~~~------------------------~~   55 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAI-TDHPCKEL------------------------GC   55 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEE-EECSCSSS------------------------CC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCC-CCchhhhh------------------------hh
Confidence            47999999999999999999988754   6778888777654100 00000000                        00


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhh-hhhHHHHhhhhccccccceEEEEEECC
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERF-EESKSELQCLLTDESLASSIVFLVDTS  154 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~-~~~~~~~~~~~~~~~~~d~ii~v~d~~  154 (249)
                      .................+.++|+||.... .........++..++.+|++++|+|+.
T Consensus        56 ~~~~~~~~~~~~~~~~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          56 SPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             SCCCSSSCEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETT
T ss_pred             ccCccccccccccccccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            00000000011123456889999995432 223345677888999999999999986

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.40  E-value=1.7e-12  Score=98.93  Aligned_cols=126  Identities=7%  Similarity=-0.042  Sum_probs=73.0

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcccccCCc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTL   98 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~   98 (249)
                      ..+++|+|+|.+|||||||+|+|++.......+..+.+....                                      
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~--------------------------------------   71 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV--------------------------------------   71 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE--------------------------------------
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEE--------------------------------------
Confidence            567899999999999999999999876543222211111111                                      


Q ss_pred             ccceeceeccccccceEEEEEeCCCchhhhhhHHHH---hhhhccccccceEEEEEECCChh-h--hHhhHHHHHHHHhc
Q psy871           99 HPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSEL---QCLLTDESLASSIVFLVDTSDRE-R--FEESKSELQCLLTD  172 (249)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~---~~~~~~~~~~d~ii~v~d~~~~~-~--~~~~~~~~~~~~~~  172 (249)
                             .......+..+.++||||...........   ..........|++++|++.+... +  -......+..+...
T Consensus        72 -------~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~  144 (257)
T d1h65a_          72 -------MVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK  144 (257)
T ss_dssp             -------EEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG
T ss_pred             -------EEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch
Confidence                   11112234568999999964322221111   11122345678999998887532 1  11122233333211


Q ss_pred             cCCCCCcEEEEEecCCCCC
Q psy871          173 ESLASCPVLILGNKIDKHG  191 (249)
Q Consensus       173 ~~~~~~p~ivv~nK~Dl~~  191 (249)
                        ....++++|+||+|...
T Consensus       145 --~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         145 --GIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             --GGGGGEEEEEECCSCCC
T ss_pred             --hhhhCEEEEEECcccCC
Confidence              12358999999999875

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=4.9e-11  Score=92.84  Aligned_cols=182  Identities=11%  Similarity=-0.007  Sum_probs=89.1

Q ss_pred             HhHHHHhhhcccccc--eecceEEEeccCCcchHHHHHHHhcCCCCCCC--C-CCCcccceeeeeeeeceEEEEcCCCCc
Q psy871            4 IWDWFTGVLGYLGLW--TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPV--P-TLHPILGYLGLWTKSGKLLFLGLDNAG   78 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~--~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~--~-t~~~~~~~~~~~~~~~~~~~~g~~~~G   78 (249)
                      +.+.+-+.+.-+|..  -..++|+|+|..++|||||+|+|++..+....  | |..+..-.+.   .............+
T Consensus         7 ~~~~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~---~~~~~~~~~~~~~~   83 (299)
T d2akab1           7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLV---NSTTEYAEFLHCKG   83 (299)
T ss_dssp             HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEE---ECSSCEEEETTSTT
T ss_pred             HHHHHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEe---ccccceeEEEeCCC
Confidence            566777777777755  35678999999999999999999998864322  2 2222211211   22222222222222


Q ss_pred             h-----hHHHHHHhcCCcccccCCcccceeceeccccc-cceEEEEEeCCCchhhhh------hHH-HHhhhhccccccc
Q psy871           79 K-----TTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPA-VDAIVFLVDTSDRERFEE------SKS-ELQCLLTDESLAS  145 (249)
Q Consensus        79 k-----ssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~D~~g~~~~~~------~~~-~~~~~~~~~~~~d  145 (249)
                      +     ..+..........................+.. ....+.++|+||......      ... .......++...+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~  163 (299)
T d2akab1          84 KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKEN  163 (299)
T ss_dssp             CCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTT
T ss_pred             CeeCCHHHHHHHHHHHHHHhhCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCcc
Confidence            2     11111111000000000000000011011111 122488999999543211      111 1111223444555


Q ss_pred             -eEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          146 -SIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       146 -~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                       ++++|.++...........+.+++    .....++++|+||+|+.+.
T Consensus       164 ~~il~v~~a~~~~~~~~~~~~~~~~----~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         164 CLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             EEEEEEEESSSCGGGCHHHHHHHHH----CTTCSSEEEEEECGGGSCT
T ss_pred             ceeeeecccccchhhhHHHHHHHHh----CcCCCceeeEEeccccccc
Confidence             556677776655554433333333    2356789999999999774

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.18  E-value=1.2e-10  Score=90.81  Aligned_cols=45  Identities=16%  Similarity=0.285  Sum_probs=35.5

Q ss_pred             hHhHHHHhhhcccccc-eecceEEEeccCCcchHHHHHHHhcCCCC
Q psy871            3 QIWDWFTGVLGYLGLW-TKSGKLLFLGLDNAGKTTLLHMLKDDRLA   47 (249)
Q Consensus         3 ~~~~~~~~~~~~~~~~-~~~~~i~vvG~~~~GKStll~~l~~~~~~   47 (249)
                      -+.+.+-+.+..++.. -.-++|+|+|..++|||||+|+|++..+.
T Consensus         5 ~~~n~l~d~~~~~~~~~~~lP~ivVvG~~ssGKSSliNaLlG~~~l   50 (306)
T d1jwyb_           5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFL   50 (306)
T ss_dssp             HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHhCcCCCCCCeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            3567777777766433 44579999999999999999999998864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.7e-08  Score=73.46  Aligned_cols=84  Identities=14%  Similarity=0.129  Sum_probs=47.9

Q ss_pred             EEEEEeCCCchhhhhhHHHH--hhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCC
Q psy871          115 IVFLVDTSDRERFEESKSEL--QCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGA  192 (249)
Q Consensus       115 ~~~v~D~~g~~~~~~~~~~~--~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  192 (249)
                      ..+++.++|...-..+...+  ...+......+.++.|+|+.+..........+...++      ..=++|+||+|+.++
T Consensus        91 d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~------~AD~ivlNK~Dl~~~  164 (222)
T d1nija1          91 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG------YADRILLTKTDVAGE  164 (222)
T ss_dssp             SEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHH------TCSEEEEECTTTCSC
T ss_pred             ceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHH------hCCcccccccccccH
Confidence            35677788754444333321  1112223456889999999885443222122222222      234788999999864


Q ss_pred             CCHHHHHHHhhhcc
Q psy871          193 ASEEEIRQYFGLYG  206 (249)
Q Consensus       193 ~~~~~~~~~~~~~~  206 (249)
                        .+.+.+.++.++
T Consensus       165 --~~~~~~~l~~lN  176 (222)
T d1nija1         165 --AEKLHERLARIN  176 (222)
T ss_dssp             --THHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHh
Confidence              456777777665

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.70  E-value=3.7e-08  Score=71.64  Aligned_cols=173  Identities=14%  Similarity=0.120  Sum_probs=83.5

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCch--hHHHHHHh---cCCcccc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK--TTLLHMLK---DDRLAQP   94 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gk--ssl~~~l~---~~~~~~~   94 (249)
                      ++..|+++||+||||||.+-.|... +..                ...++.++..|.---  ..-++.+.   +-.+...
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~-~~~----------------~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~   73 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYF-YKK----------------KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE   73 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHH-HHH----------------TTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH-HHH----------------CCCceEEEEeeccccchhHHHHHhccccCcceeec
Confidence            4567888999999999998888631 110                223455554443322  21122222   1111110


Q ss_pred             cCCcccceecee---ccccccceEEEEEeCCCchhhhhh---HHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHH
Q psy871           95 VPTLHPTRRVWK---DYFPAVDAIVFLVDTSDRERFEES---KSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQC  168 (249)
Q Consensus        95 ~~~~~~~~~~~~---~~~~~~~~~~~v~D~~g~~~~~~~---~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~  168 (249)
                      . ..........   ......+..++++||+|...+.+.   ...+..+... ...+-+++|+|++....-.  . ....
T Consensus        74 ~-~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~-~~~~~~~LVl~a~~~~~~~--~-~~~~  148 (211)
T d1j8yf2          74 P-GEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEA-IKPDEVTLVIDASIGQKAY--D-LASK  148 (211)
T ss_dssp             T-TCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHH-HCCSEEEEEEEGGGGGGHH--H-HHHH
T ss_pred             c-cchhhhHHHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhh-cCCceEEEEEecccCcchH--H-HHhh
Confidence            0 1111110000   111134567999999996433321   2222322222 3467789999998753222  1 1112


Q ss_pred             HHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          169 LLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       169 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      ....   .+ +--+++||.|-..  ..-.+.+......                 .|+..+|  +|+++++
T Consensus       149 ~~~~---~~-~~~lI~TKlDet~--~~G~~l~~~~~~~-----------------lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         149 FNQA---SK-IGTIIITKMDGTA--KGGGALSAVAATG-----------------ATIKFIG--TGEKIDE  194 (211)
T ss_dssp             HHHH---CT-TEEEEEECTTSCS--CHHHHHHHHHTTT-----------------CCEEEEE--CSSSTTC
T ss_pred             hhcc---cC-cceEEEecccCCC--cccHHHHHHHHHC-----------------cCEEEEe--CCCCccc
Confidence            2111   22 2346799999654  4566666666655                 6666666  5777754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=5.5e-08  Score=70.60  Aligned_cols=174  Identities=17%  Similarity=0.165  Sum_probs=88.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCch--hHHHHHHh---cCCccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGK--TTLLHMLK---DDRLAQ   93 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gk--ssl~~~l~---~~~~~~   93 (249)
                      +++..|+++|++||||||.+-.|... +..                ...++.++..|.--.  ..-+..+.   +-.+. 
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~-~~~----------------~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~-   68 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQ-FEQ----------------QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI-   68 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHH-HHT----------------TTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEE-
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH-HHH----------------CCCcEEEEecccccccchhhhhhhhhhcCCccc-
Confidence            34568889999999999999998632 111                122444444443322  11122221   11111 


Q ss_pred             ccCCcccceeceeccc---cccceEEEEEeCCCchhhh-hhHHHHhhhhcccc-----ccceEEEEEECCChhh-hHhhH
Q psy871           94 PVPTLHPTRRVWKDYF---PAVDAIVFLVDTSDRERFE-ESKSELQCLLTDES-----LASSIVFLVDTSDRER-FEESK  163 (249)
Q Consensus        94 ~~~~~~~~~~~~~~~~---~~~~~~~~v~D~~g~~~~~-~~~~~~~~~~~~~~-----~~d~ii~v~d~~~~~~-~~~~~  163 (249)
                      ................   ...+..++++||+|..... ...+.+..+....+     ..+-.++|+|++.... ...+.
T Consensus        69 ~~~~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~  148 (211)
T d2qy9a2          69 AQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAK  148 (211)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHh
Confidence            1111111111111111   1234568999999954332 23344444444333     3568899999987432 22221


Q ss_pred             HHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          164 SELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       164 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                         ..+ +.    --+--+++||.|-...  .-.+.+......                 .|+..++  +|+++++
T Consensus       149 ---~~~-~~----~~~~~lIlTKlDe~~~--~G~~l~~~~~~~-----------------~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         149 ---LFH-EA----VGLTGITLTKLDGTAK--GGVIFSVADQFG-----------------IPIRYIG--VGERIED  195 (211)
T ss_dssp             ---HHH-HH----SCCCEEEEECCTTCTT--TTHHHHHHHHHC-----------------CCEEEEE--CSSSGGG
T ss_pred             ---hhh-hc----cCCceEEEeecCCCCC--ccHHHHHHHHHC-----------------CCEEEEe--CCCCccc
Confidence               111 11    1244578999996442  345555555555                 6666666  6666654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.62  E-value=7.3e-08  Score=69.87  Aligned_cols=160  Identities=17%  Similarity=0.139  Sum_probs=78.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCC--CchhHHHHHHh---cCCccc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDN--AGKTTLLHMLK---DDRLAQ   93 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~--~Gkssl~~~l~---~~~~~~   93 (249)
                      .++..|+++|++||||||.+-.|... +..                ...++.++..|.  .|-..-+..+.   +-++..
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~-~~~----------------~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~   66 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRY-YQN----------------LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQ   66 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHH-HHT----------------TTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEEC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH-HHH----------------CCCcEEEEEeccccccchhhHhhcccccCceEEe
Confidence            35678899999999999998888531 110                123445554443  23322222222   111111


Q ss_pred             ccCCcccceecee---ccccccceEEEEEeCCCchhhhh-hHHHHhhhhccc-----cccceEEEEEECCChhh-hHhhH
Q psy871           94 PVPTLHPTRRVWK---DYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDE-----SLASSIVFLVDTSDRER-FEESK  163 (249)
Q Consensus        94 ~~~~~~~~~~~~~---~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~-----~~~d~ii~v~d~~~~~~-~~~~~  163 (249)
                      .... ........   ......+..++++||+|...... ..+.+..+....     ...+-+++|+|++.... ...+.
T Consensus        67 ~~~~-~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~  145 (207)
T d1okkd2          67 GPEG-TDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAK  145 (207)
T ss_dssp             CCTT-CCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHH
T ss_pred             ccCC-ccHHHHHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHH
Confidence            1101 11111110   01122355799999999654332 233333333332     24577899999987532 22222


Q ss_pred             HHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871          164 SELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYG  206 (249)
Q Consensus       164 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  206 (249)
                      .....+        -+--+++||.|-..  ..-.+.+......
T Consensus       146 ~~~~~~--------~~~~lI~TKlDet~--~~G~~l~~~~~~~  178 (207)
T d1okkd2         146 KFHEAV--------GLTGVIVTKLDGTA--KGGVLIPIVRTLK  178 (207)
T ss_dssp             HHHHHH--------CCSEEEEECTTSSC--CCTTHHHHHHHHC
T ss_pred             Hhhhcc--------CCceEEEeccCCCC--CccHHHHHHHHHC
Confidence            211111        23356899999644  2233444444444

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.58  E-value=3.8e-08  Score=75.04  Aligned_cols=86  Identities=21%  Similarity=0.182  Sum_probs=63.9

Q ss_pred             hhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCC
Q psy871          137 LLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPR  216 (249)
Q Consensus       137 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (249)
                      .-..++.+|+++.|+|+..|.+..+-  .+.+++     .++|.++|+||+|+.+....+++.++++...          
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~----------   71 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQG----------   71 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTT----------
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCH--HHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHhcC----------
Confidence            33567889999999999988766543  455553     3689999999999987544455555554433          


Q ss_pred             CCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          217 SEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       217 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                             ...+++||+++.|..++...+.+
T Consensus        72 -------~~~i~isa~~~~~~~~~~~~~~~   94 (273)
T d1puja_          72 -------IRSLSINSVNGQGLNQIVPASKE   94 (273)
T ss_dssp             -------CCEEECCTTTCTTGGGHHHHHHH
T ss_pred             -------CccceeecccCCCccccchhhhh
Confidence                   67899999999999887776654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.55  E-value=3.1e-08  Score=75.56  Aligned_cols=33  Identities=30%  Similarity=0.549  Sum_probs=27.3

Q ss_pred             cccceecceEEEeccCCcchHHHHHHHhcCCCC
Q psy871           15 LGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA   47 (249)
Q Consensus        15 ~~~~~~~~~i~vvG~~~~GKStll~~l~~~~~~   47 (249)
                      -+...+..+|+|+|.||||||||+|+|.+....
T Consensus       106 ~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~  138 (273)
T d1puja_         106 KGVKPRAIRALIIGIPNVGKSTLINRLAKKNIA  138 (273)
T ss_dssp             TTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred             ccCCCCceEEEEEecCccchhhhhhhhhccceE
Confidence            344567789999999999999999999876544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.54  E-value=2e-07  Score=67.72  Aligned_cols=99  Identities=13%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             ceEEEEEeCCCchhhhhh-HHHHhhhhcccc-----ccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEec
Q psy871          113 DAIVFLVDTSDRERFEES-KSELQCLLTDES-----LASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNK  186 (249)
Q Consensus       113 ~~~~~v~D~~g~~~~~~~-~~~~~~~~~~~~-----~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  186 (249)
                      +..++++||+|....... ...+..+.....     ..+-.++|+|++...  ..+......+ ..    --+-=+++||
T Consensus        93 ~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~-~~----~~~~~lI~TK  165 (213)
T d1vmaa2          93 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFK-EA----VNVTGIILTK  165 (213)
T ss_dssp             TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHH-HH----SCCCEEEEEC
T ss_pred             CCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhc-cc----cCCceEEEec
Confidence            456999999995543332 233333333332     256789999997742  2222122222 11    1244578999


Q ss_pred             CCCCCCCCHHHHHHHhhhcccccCcccCCCCCCCCCceeEEEeeeccccchHH
Q psy871          187 IDKHGAASEEEIRQYFGLYGLTTGKVATPRSEMSGRPIELFMCSVLMRQGYGD  239 (249)
Q Consensus       187 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  239 (249)
                      .|-..  ..-.+.+......                 .|+..++  +|+++++
T Consensus       166 lDe~~--~~G~~l~~~~~~~-----------------~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         166 LDGTA--KGGITLAIARELG-----------------IPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGGCS--CTTHHHHHHHHHC-----------------CCEEEEE--CSSSGGG
T ss_pred             ccCCC--cccHHHHHHHHHC-----------------CCEEEEe--CCCCccc
Confidence            99643  2344555555555                 6666666  5666654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.54  E-value=7.5e-08  Score=70.41  Aligned_cols=87  Identities=13%  Similarity=0.074  Sum_probs=59.7

Q ss_pred             ccccceEEEEEECCChhhh-HhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcccccCcccCCCCCC
Q psy871          141 ESLASSIVFLVDTSDRERF-EESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYGLTTGKVATPRSEM  219 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (249)
                      ....|.+++|+.+.+|+.- .-+++++....    ..++|.++|+||+||.++...+.+........             
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~-------------   70 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAE----KNELETVMVINKMDLYDEDDLRKVRELEEIYS-------------   70 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHH----HTTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-------------
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HcCCCEEEEEeCcccCCHHHHHHHHHhhcccc-------------
Confidence            3567889999988776432 32333333222    27899999999999987533344444444332             


Q ss_pred             CCCceeEEEeeeccccchHHHHHHHhh
Q psy871          220 SGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       220 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                        ...+++.+||+++.|++++.++|..
T Consensus        71 --~~~~v~~vSa~~~~g~~~L~~~l~~   95 (225)
T d1u0la2          71 --GLYPIVKTSAKTGMGIEELKEYLKG   95 (225)
T ss_dssp             --TTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             --cceeEEEeccccchhHhhHHHHhcC
Confidence              1267999999999999999988754

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.49  E-value=1.4e-07  Score=68.50  Aligned_cols=159  Identities=16%  Similarity=0.131  Sum_probs=79.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCCCCCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHH--HHHHh---cCCcccc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTL--LHMLK---DDRLAQP   94 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl--~~~l~---~~~~~~~   94 (249)
                      ++..|+++|++||||||.+-.|...-..                 ...++.++..|.-.....  +..+.   +-++...
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~-----------------~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~   71 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKG-----------------KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV   71 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHH-----------------TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH-----------------CCCcEEEEecccccchHHHHHHHHHHhcCCccccc
Confidence            3446788999999999999998642110                 223445555554433322  11221   1111100


Q ss_pred             cCCcccceec---eeccccccceEEEEEeCCCchhhhh-hHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHH
Q psy871           95 VPTLHPTRRV---WKDYFPAVDAIVFLVDTSDRERFEE-SKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLL  170 (249)
Q Consensus        95 ~~~~~~~~~~---~~~~~~~~~~~~~v~D~~g~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~  170 (249)
                      . ........   ........+..++++||+|...... ....+..+.. ....+-+++|+|++....-..   ....+.
T Consensus        72 ~-~~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~-~~~~~~~llv~~a~~~~~~~~---~~~~f~  146 (207)
T d1ls1a2          72 M-DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE-VLGPDEVLLVLDAMTGQEALS---VARAFD  146 (207)
T ss_dssp             C-TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH-HHCCSEEEEEEEGGGTHHHHH---HHHHHH
T ss_pred             c-ccchhhHHHHHHHHHHhhccCcceeecccccchhhhhhHHHHHHHHh-hcCCceEEEEeccccchhHHH---HHHHHH
Confidence            0 01111100   0011123455689999999654333 2233333332 345788899999987643322   222222


Q ss_pred             hccCCCCCcEEEEEecCCCCCCCCHHHHHHHhhhcc
Q psy871          171 TDESLASCPVLILGNKIDKHGAASEEEIRQYFGLYG  206 (249)
Q Consensus       171 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  206 (249)
                      +.   . -+-=++++|.|-..  ..-.+.+......
T Consensus       147 ~~---~-~~~~~I~TKlDe~~--~~G~~l~~~~~~~  176 (207)
T d1ls1a2         147 EK---V-GVTGLVLTKLDGDA--RGGAALSARHVTG  176 (207)
T ss_dssp             HH---T-CCCEEEEECGGGCS--SCHHHHHHHHHHC
T ss_pred             hh---C-CCCeeEEeecCccc--cchHHHHHHHHHC
Confidence            11   1 12347899999643  2345555555554

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.43  E-value=1.7e-06  Score=60.98  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=20.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .||+|+|++|+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999999976

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.29  E-value=1.6e-07  Score=68.64  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ....+++|++|||||||+|+|...
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCCHHHHHHhhcch
Confidence            457799999999999999999654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.29  E-value=2.5e-07  Score=67.82  Aligned_cols=85  Identities=12%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             ccccceEEEEEECCChhh-hHhhHHHHHHHHhccCCCCCcEEEEEecCCCCCCCCHHH-HH---HHhhhcccccCcccCC
Q psy871          141 ESLASSIVFLVDTSDRER-FEESKSELQCLLTDESLASCPVLILGNKIDKHGAASEEE-IR---QYFGLYGLTTGKVATP  215 (249)
Q Consensus       141 ~~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~---~~~~~~~~~~~~~~~~  215 (249)
                      ....|.+++|+++.+|+. ..-+++++...    ...+++.++|+||+||.++...++ +.   +....++         
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a----~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g---------   74 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG---------   74 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT---------
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHH----HHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhcc---------
Confidence            357889999999887643 33333333222    237899999999999987532222 22   2233334         


Q ss_pred             CCCCCCCceeEEEeeeccccchHHHHHHHhh
Q psy871          216 RSEMSGRPIELFMCSVLMRQGYGDGFRWLAN  246 (249)
Q Consensus       216 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  246 (249)
                              .+++.+||+++.|++++.++|..
T Consensus        75 --------~~v~~~Sa~~~~gl~~L~~~l~~   97 (231)
T d1t9ha2          75 --------YDVYLTSSKDQDSLADIIPHFQD   97 (231)
T ss_dssp             --------CCEEECCHHHHTTCTTTGGGGTT
T ss_pred             --------ccceeeecCChhHHHHHHHhhcc
Confidence                    78999999999999998877653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.22  E-value=2.5e-07  Score=67.79  Aligned_cols=25  Identities=24%  Similarity=0.527  Sum_probs=21.2

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +....+++|++|||||||+|+|...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEECCCCccHHHHHHhhccH
Confidence            4567889999999999999999654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=2.2e-06  Score=59.85  Aligned_cols=22  Identities=41%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.++|+|++|||||||+++|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999974

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.87  E-value=3.1e-06  Score=59.21  Aligned_cols=23  Identities=35%  Similarity=0.390  Sum_probs=21.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .++|+|+|+|||||||+.++|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999999964

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.85  E-value=3.1e-06  Score=59.93  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=21.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..+|+|.|++|||||||.++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999975

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.78  E-value=5.7e-06  Score=57.92  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.5

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+..+|+|+|+|||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4567999999999999999999975

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.77  E-value=5.5e-06  Score=56.73  Aligned_cols=21  Identities=24%  Similarity=0.339  Sum_probs=18.5

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|++.|+||||||||.++|..
T Consensus         4 lIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377899999999999999854

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.69  E-value=8.7e-06  Score=58.24  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .++..|+|+|+|||||||+..+|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999974

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=8.2e-06  Score=57.63  Aligned_cols=60  Identities=17%  Similarity=0.312  Sum_probs=36.7

Q ss_pred             EEEeccCCcchHHHHHHHhcCC---CC--CCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           24 LLFLGLDNAGKTTLLHMLKDDR---LA--QPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~~---~~--~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      |+|+||+|||||||+++|....   +.  ...+|..+..+..    ......+     .....|......+.+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~----~G~dY~F-----vs~~~F~~~~~~g~fi   70 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEE----NGKNYYF-----VSHDQMMQDISNNEYL   70 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CC----BTTTBEE-----CCHHHHHHHHHTTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccc----cCcccee-----eehhhhhhheecCceE
Confidence            8889999999999999998543   22  4445666555555    2222222     3556666666665554

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.66  E-value=9.8e-06  Score=57.73  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ++++|+|.|+|||||||+...|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999999964

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.65  E-value=1.3e-05  Score=57.24  Aligned_cols=26  Identities=15%  Similarity=0.209  Sum_probs=23.4

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhc
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.|-++|+|+|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999999975

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=2.9e-05  Score=56.81  Aligned_cols=23  Identities=35%  Similarity=0.586  Sum_probs=20.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++++||.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            78999999999999999998753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.58  E-value=1.5e-05  Score=55.41  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=18.6

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .++|+|.+|||||||+++|..
T Consensus         3 ii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467999999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.58  E-value=1.7e-05  Score=55.94  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=19.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+|+|+|+|||||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999964

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.6e-05  Score=58.68  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=21.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -+++|+|++|||||||++.|.+-
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47999999999999999999874

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00013  Score=54.94  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +-..|.|+|+.++|||||+|.|.+..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            34489999999999999999998755

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=1.9e-05  Score=56.14  Aligned_cols=60  Identities=22%  Similarity=0.320  Sum_probs=36.2

Q ss_pred             EEEeccCCcchHHHHHHHhcCCC-----CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           24 LLFLGLDNAGKTTLLHMLKDDRL-----AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      |+|+||+|||||||+++|.....     ....+|..+..+..    ......+     .....+......+.+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~----~g~dy~f-----vs~~~f~~~~~~g~f~   68 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV----NGKDYNF-----VSVDEFKSMIKNNEFI   68 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC----BTTTEEE-----CCHHHHHHHHHTTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCc----CCcccee-----ccHHHHHHHHhcccce
Confidence            89999999999999999976432     23444555554444    2222222     2445555555555543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.53  E-value=1.9e-05  Score=55.01  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=19.2

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      -|+|.|+|||||||+.++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999974

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=1.9e-05  Score=56.32  Aligned_cols=23  Identities=26%  Similarity=0.232  Sum_probs=21.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +++|+|+|+|||||||...+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999974

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.53  E-value=2.2e-05  Score=55.91  Aligned_cols=24  Identities=33%  Similarity=0.362  Sum_probs=21.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.++|+++|+|||||||....|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            456999999999999999999974

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=2e-05  Score=55.76  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -|+|+||+|||||||++.|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.1e-05  Score=56.73  Aligned_cols=62  Identities=16%  Similarity=0.247  Sum_probs=40.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC----C--CCCCCCCCcccceeeeeeeeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR----L--AQPVPTLHPILGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~----~--~~~~~t~~~~~~~~~~~~~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      -|+|+||+|||||||.++|....    +  +.+.+|..+..+..    ......     ..-+..|..+...+.+.+
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~----~G~dY~-----Fvs~~~F~~~i~~g~flE   71 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEV----HGEHYF-----FVNHDEFKEMISRDAFLE   71 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCC----BTTTBE-----ECCHHHHHHHHHTTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCcccc----ccccce-----eecHHHHHHHhhhhhhee
Confidence            47899999999999999998643    2  23456666666655    222222     234567777777776654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=2.2e-05  Score=54.55  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ++|+++|+|||||||+-+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999963

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.50  E-value=2.6e-05  Score=54.47  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      |....|+|.|++||||||+.++|..
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456788889999999999999975

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.49  E-value=2.6e-05  Score=55.04  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+|+|+|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=2.8e-05  Score=54.86  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.+|+|+|+|||||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999964

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.48  E-value=2.5e-05  Score=58.18  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=24.4

Q ss_pred             cccccceec-ceEEEeccCCcchHHHHHHHhcC
Q psy871           13 GYLGLWTKS-GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        13 ~~~~~~~~~-~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .-+++.-++ -+++|+|++|||||||++.|.+-
T Consensus        32 ~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          32 RNINLKIPAGKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             eceEEEEcCCCEEEEECCCCChHHHHHHHHhcc
Confidence            334444333 38999999999999999999764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.47  E-value=2.5e-05  Score=57.70  Aligned_cols=32  Identities=19%  Similarity=0.341  Sum_probs=24.3

Q ss_pred             cccccceec-ceEEEeccCCcchHHHHHHHhcC
Q psy871           13 GYLGLWTKS-GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        13 ~~~~~~~~~-~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +-+++.-++ -+++|+|++|||||||++.|.+-
T Consensus        19 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            333444333 38999999999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=2.9e-05  Score=54.65  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+|+++|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999964

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.46  E-value=2.8e-05  Score=56.86  Aligned_cols=22  Identities=23%  Similarity=0.384  Sum_probs=20.2

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            7899999999999999999764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.46  E-value=4.2e-05  Score=56.43  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++++||.|||||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7899999999999999999774

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.46  E-value=2.6e-05  Score=55.95  Aligned_cols=30  Identities=30%  Similarity=0.440  Sum_probs=23.3

Q ss_pred             cccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           15 LGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        15 ~~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++.-++- .++|+|+.|||||||++.+++-
T Consensus        20 is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          20 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             EEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHhcc
Confidence            34443333 6789999999999999999874

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.45  E-value=4.2e-05  Score=54.37  Aligned_cols=38  Identities=26%  Similarity=0.253  Sum_probs=26.8

Q ss_pred             hHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhc
Q psy871            5 WDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +|.+.+.+.-+.- ..+..|+|.|++|||||||.++|..
T Consensus         7 ~~~~~~~~~~~~~-~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_           7 IDFLCKTILAIKT-AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             HHHHHHHHHTSCC-SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhccC-CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3444444433322 2356799999999999999999974

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=3.1e-05  Score=54.60  Aligned_cols=22  Identities=36%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+|+|+|+|||||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999974

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=2.8e-05  Score=56.06  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.-|+++|.|||||||+.++|+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999974

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=3.2e-05  Score=54.16  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .++.-|+++|+|||||||+..+|..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566899999999999999999953

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=3.2e-05  Score=53.20  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|+++|++||||||+.+.|..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999964

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.1e-05  Score=57.57  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=25.2

Q ss_pred             hcccccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           12 LGYLGLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        12 ~~~~~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +.-+++.-++- +++|+|++|||||||++.|.+-
T Consensus        30 L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             EeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence            33344444443 8999999999999999999764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.2e-05  Score=54.37  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=19.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|.|+|+||+|||||+..+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            3689999999999999999874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=3.1e-05  Score=53.82  Aligned_cols=25  Identities=12%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.+.-++|+|+|||||||+.++|..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456778899999999999999975

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.41  E-value=2.8e-05  Score=56.70  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999998753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.41  E-value=3.4e-05  Score=56.62  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++++||.|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67899999999999999998753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=3.2e-05  Score=55.24  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+...|+|+|+|||||||+...|+.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999975

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=3.5e-05  Score=58.23  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=21.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.++|+|+.|||||||++.|++.
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHhCC
Confidence            47999999999999999999874

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.40  E-value=4e-05  Score=53.95  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..|+|.|++||||||+++.|..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999964

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=2.7e-05  Score=55.34  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=21.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...|.++|+|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            566889999999999999999964

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.38  E-value=4.1e-05  Score=56.24  Aligned_cols=30  Identities=37%  Similarity=0.509  Sum_probs=23.8

Q ss_pred             ccceecc-eEEEeccCCcchHHHHHHHhcCC
Q psy871           16 GLWTKSG-KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        16 ~~~~~~~-~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      ++.-++- .++++|+.|||||||++.+.+-.
T Consensus        23 sl~i~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eeEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3443343 79999999999999999998754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.37  E-value=4.2e-05  Score=56.13  Aligned_cols=30  Identities=40%  Similarity=0.513  Sum_probs=23.6

Q ss_pred             ccceecc-eEEEeccCCcchHHHHHHHhcCC
Q psy871           16 GLWTKSG-KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        16 ~~~~~~~-~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      ++.-++- .++++|+.|||||||++.+.+-.
T Consensus        26 sl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          26 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3443343 78999999999999999998753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.37  E-value=4.6e-05  Score=56.74  Aligned_cols=29  Identities=24%  Similarity=0.485  Sum_probs=23.0

Q ss_pred             ccceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           16 GLWTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        16 ~~~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ++.-++- .++++|+.|||||||++.+++-
T Consensus        24 s~~v~~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          24 SISVNKGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             CCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHHCC
Confidence            3343333 6799999999999999999875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.35  E-value=4.3e-05  Score=53.42  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +-..|.++|+|||||||+-++|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446788999999999999999863

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4.4e-05  Score=55.27  Aligned_cols=25  Identities=12%  Similarity=0.037  Sum_probs=21.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++.|+|.|++|||||||.++|...
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.35  E-value=4.7e-05  Score=55.41  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=22.8

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      |+..+|+|-|||||||||....|..
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            6778999999999999999999974

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=4.1e-05  Score=56.25  Aligned_cols=22  Identities=27%  Similarity=0.304  Sum_probs=20.2

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            7899999999999999999764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.32  E-value=4.7e-05  Score=54.32  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|+|+|+|||||||+..+|..
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999975

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.31  E-value=3.7e-05  Score=56.51  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            79999999999999999998753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=5e-05  Score=55.91  Aligned_cols=30  Identities=27%  Similarity=0.359  Sum_probs=23.4

Q ss_pred             ccceecc-eEEEeccCCcchHHHHHHHhcCC
Q psy871           16 GLWTKSG-KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        16 ~~~~~~~-~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      ++.-++- .++|+|+.|||||||++.|++..
T Consensus        22 s~~v~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          22 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3443333 68899999999999999998753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.30  E-value=3.4e-05  Score=57.39  Aligned_cols=23  Identities=26%  Similarity=0.602  Sum_probs=20.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -+++|+|++|||||||++.|.+-
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc
Confidence            38999999999999999999764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.28  E-value=6e-05  Score=52.07  Aligned_cols=21  Identities=33%  Similarity=0.681  Sum_probs=19.1

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      +|+++|+|||||||+-.+|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999964

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=4.5e-05  Score=56.00  Aligned_cols=21  Identities=38%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .++++|+.|||||||++.+++
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            689999999999999999987

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.26  E-value=6.5e-05  Score=55.93  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=20.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++|+|+.|||||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            7899999999999999999764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.23  E-value=7.7e-05  Score=51.92  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=19.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .-|++.|+|||||||+.+.|...
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=8e-05  Score=52.94  Aligned_cols=37  Identities=30%  Similarity=0.348  Sum_probs=25.8

Q ss_pred             EEEeccCCcchHHHHHHHhcCCC-----CCCCCCCCccccee
Q psy871           24 LLFLGLDNAGKTTLLHMLKDDRL-----AQPVPTLHPILGYL   60 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~~~-----~~~~~t~~~~~~~~   60 (249)
                      |+|+||+|||||||.++|.....     ..+.+|..+..+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~   44 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE   44 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCc
Confidence            78999999999999999975321     23444555544443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.10  E-value=0.00015  Score=54.17  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=21.6

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      .+.-|++.||||+|||||..+|....
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            33458899999999999999998643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.08  E-value=0.00011  Score=52.42  Aligned_cols=27  Identities=30%  Similarity=0.251  Sum_probs=23.5

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+++..|+|-|..||||||+++.|...
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            456779999999999999999999753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.07  E-value=0.00013  Score=51.74  Aligned_cols=25  Identities=20%  Similarity=0.165  Sum_probs=21.8

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .++.|+|+|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999999653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.02  E-value=0.0004  Score=53.42  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+|+|.|+.|||||||+++|...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            47999999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.02  E-value=0.00015  Score=50.34  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.4

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|+++|++||||||+-+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            477899999999999999963

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.02  E-value=0.00015  Score=51.06  Aligned_cols=20  Identities=30%  Similarity=0.526  Sum_probs=17.4

Q ss_pred             EEEeccCCcchHHHHHHHhc
Q psy871           24 LLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~   43 (249)
                      |+|.|++||||||+.+.|..
T Consensus         4 ivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999964

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.96  E-value=0.00026  Score=51.71  Aligned_cols=24  Identities=38%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.+.+++.||||+||||+++++..
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            345699999999999999999975

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00031  Score=52.20  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +..+++.||||+|||++++++..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34599999999999999999985

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00027  Score=51.35  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+.+++.||+|+||||+++.+..
T Consensus        36 ~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          36 MPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCchhhHHHHHH
Confidence            34589999999999999999864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.00023  Score=52.27  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=21.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+.+++.||||+||||+.+.|...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            457999999999999999999753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.88  E-value=0.00023  Score=52.31  Aligned_cols=25  Identities=36%  Similarity=0.569  Sum_probs=21.7

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ....+++.||||+||||+.+++...
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999999999853

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.85  E-value=0.00023  Score=53.08  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .....++|.|+||+||||+++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999875

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.82  E-value=0.00014  Score=54.79  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=19.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+++.|+|.|.+||||||+.++|..
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHH
Confidence            4678999999999999999998864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00032  Score=49.54  Aligned_cols=24  Identities=21%  Similarity=0.393  Sum_probs=21.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.-++++||+||+|||+++..|..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            345899999999999999999964

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00031  Score=50.81  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+.|+|.|||||||||+-..|..
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35889999999999999999974

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.81  E-value=0.00029  Score=50.69  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=22.2

Q ss_pred             ceecceEEEeccCCcchHHHHHHHh
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~   42 (249)
                      .++...|.+.|.|||||||+.+.|.
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4566789999999999999999995

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00034  Score=51.70  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ...+++.||||+||||++.+++..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00033  Score=53.38  Aligned_cols=25  Identities=20%  Similarity=0.170  Sum_probs=22.2

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ++++.|+|.|++|||||||.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            6678999999999999999988864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0024  Score=45.59  Aligned_cols=36  Identities=17%  Similarity=0.197  Sum_probs=25.8

Q ss_pred             hHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhc
Q psy871            5 WDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      |+.+...+   .-..-++-+++.|++|+||||+...+..
T Consensus        11 ~~~l~~~~---~~~~l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          11 FEKLVASY---QAGRGHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             HHHHHHHH---HTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHH---HcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence            44454433   3333455699999999999999998865

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00055  Score=49.69  Aligned_cols=36  Identities=25%  Similarity=0.249  Sum_probs=25.8

Q ss_pred             hHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871            5 WDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+++..|+.--    +.+.+++.||+|+||||++.+++..
T Consensus        23 ~~~L~~~i~~~----~~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          23 ITTVRKFVDEG----KLPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             HHHHHHHHHTT----CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC----CCCeEEEECCCCCChhHHHHHHHHH
Confidence            34555555332    2335899999999999999999753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00042  Score=51.65  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=21.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ....++++||+||+|||+++..|..
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHH
Confidence            3456899999999999999999975

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.66  E-value=0.00048  Score=50.87  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .-+++.||||+|||+|.+++...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35999999999999999999853

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0026  Score=46.50  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=20.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +-+.-+++.|++|+||||+.+.+..
T Consensus        32 ~~~~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          32 RIHHAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeeEEEECCCCCcHHHHHHHHHH
Confidence            3345689999999999999998864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.63  E-value=0.00045  Score=51.02  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...|++.||||+|||++.+++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            34699999999999999999975

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00065  Score=50.06  Aligned_cols=38  Identities=18%  Similarity=0.241  Sum_probs=26.8

Q ss_pred             HhHHHHhhhcccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871            4 IWDWFTGVLGYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +++.+..++.   -....+.+++.||+|+||||++.+++..
T Consensus        19 ~~~~L~~~~~---~~~~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          19 LTNFLKSLSD---QPRDLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             HHHHHHTTTT---CTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             HHHHHHHHHH---cCCCCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3444444432   2334456999999999999999999764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.53  E-value=0.00087  Score=50.04  Aligned_cols=21  Identities=29%  Similarity=0.219  Sum_probs=17.8

Q ss_pred             EEEeccCCcchHHHHHHHhcC
Q psy871           24 LLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~   44 (249)
                      +.+.||||+||||+++++...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999999753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.00058  Score=52.23  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=22.0

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +...++++||||+|||.|.++|...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            4567999999999999999999753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.47  E-value=0.00072  Score=50.31  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...++|.|++|+|||||++.++.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Confidence            45788999999999999999864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00072  Score=50.81  Aligned_cols=25  Identities=16%  Similarity=0.082  Sum_probs=21.4

Q ss_pred             ceecceEEEeccCCcchHHHHHHHh
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~   42 (249)
                      ..+++-|+|-|++|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3457789999999999999998875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.00078  Score=50.04  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=21.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +.-+++.||||+|||+|++++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            446999999999999999999763

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.00082  Score=48.18  Aligned_cols=24  Identities=21%  Similarity=0.159  Sum_probs=20.7

Q ss_pred             ceEEEeccCCcchHHHHHHHhcCC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +.|+|+|.+||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            468999999999999999997543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.00084  Score=48.93  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +.+++.||+|+||||+++.++..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            45899999999999999999753

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.35  E-value=0.0017  Score=44.08  Aligned_cols=23  Identities=30%  Similarity=0.184  Sum_probs=20.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..|++-|+-|||||||++.+...
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            46889999999999999999864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.28  E-value=0.0013  Score=46.92  Aligned_cols=23  Identities=26%  Similarity=0.221  Sum_probs=20.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..|+|+|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            46899999999999999998643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.15  E-value=0.0013  Score=46.90  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=18.7

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998863

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.05  E-value=0.0021  Score=46.13  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=19.2

Q ss_pred             EEEeccCCcchHHHHHHHhcC
Q psy871           24 LLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~~   44 (249)
                      +.+.|++|+|||.|+++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            889999999999999999753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.0016  Score=48.55  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=21.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhcC
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..-|++.||||+|||+|++++++.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            346999999999999999999764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.00  E-value=0.016  Score=41.61  Aligned_cols=75  Identities=9%  Similarity=0.096  Sum_probs=44.3

Q ss_pred             eEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEE-EEEecCCCCCC
Q psy871          114 AIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVL-ILGNKIDKHGA  192 (249)
Q Consensus       114 ~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~  192 (249)
                      ..++++|+++....  ...      ..+..+|.++++...+. .+.....+.+..+ ++   .+.|++ +|.||.|..+.
T Consensus       112 ~d~IiiD~~~~~~~--~~~------~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~-~~---~~~~~~giv~N~~~~~~~  178 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAM------SAMLSGEEALLVTNPEI-SCLTDTMKVGIVL-KK---AGLAILGFVLNRYGRSDR  178 (237)
T ss_dssp             CSEEEEECCSSSSH--HHH------HHHTTCSEEEEEECSCH-HHHHHHHHHHHHH-HH---TTCEEEEEEEEEETSCTT
T ss_pred             CCEEEEcccccccc--cch------hhhhhhhcccccccccc-eecchhhHHHHHH-hh---hhhhhhhhhhcccccccc
Confidence            45889999874321  111      23456899999988764 3444444344333 33   567765 89999987553


Q ss_pred             C-CHHHHHHH
Q psy871          193 A-SEEEIRQY  201 (249)
Q Consensus       193 ~-~~~~~~~~  201 (249)
                      . ..+..+++
T Consensus       179 ~~~~~~~~~~  188 (237)
T d1g3qa_         179 DIPPEAAEDV  188 (237)
T ss_dssp             CCCHHHHHHH
T ss_pred             hhhhHHHHhh
Confidence            2 33344443

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.93  E-value=0.0018  Score=50.45  Aligned_cols=25  Identities=40%  Similarity=0.441  Sum_probs=21.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+...+++.||||+|||+|..+|++
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHH
Confidence            3445899999999999999999985

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0019  Score=46.19  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=18.4

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      -|++-|..||||||+++.|..
T Consensus         4 fIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478889999999999999864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.92  E-value=0.0019  Score=49.24  Aligned_cols=32  Identities=34%  Similarity=0.520  Sum_probs=23.7

Q ss_pred             cccccceecceEEEeccCCcchHHHHHHHhcC
Q psy871           13 GYLGLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        13 ~~~~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..+|...+.-.++++||||+|||.|.++|...
T Consensus       115 ~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         115 EFGGHRYASGMVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EETTEEEESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred             HHhhcccCCceEEEECCCCccHHHHHHHHHHH
Confidence            34444444445666899999999999999864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.90  E-value=0.0016  Score=51.22  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...-++++||+||+|||+++..|..
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHH
Confidence            3455789999999999999987764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.83  E-value=0.0047  Score=41.60  Aligned_cols=26  Identities=96%  Similarity=1.390  Sum_probs=22.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      +++.++|.+++|||+|++++.+..+.
T Consensus         1 ~KI~liG~~nvGKSSLln~l~~~~~~   26 (166)
T d2qtvb1           1 GKLLFLGLDNAGKTTLLHMLKNDRLA   26 (166)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            47899999999999999999986653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0016  Score=47.47  Aligned_cols=23  Identities=35%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..|+|-|+.||||||+++.|...
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999763

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.00065  Score=48.16  Aligned_cols=22  Identities=23%  Similarity=0.194  Sum_probs=19.2

Q ss_pred             cceEEEeccCCcchHHHHHHHh
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~   42 (249)
                      +...+|+|+-||||||++.+|.
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4466789999999999999986

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.74  E-value=0.0027  Score=43.90  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=19.9

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      =|++.|++|+||||+.-+|....
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            48899999999999999987543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.73  E-value=0.0028  Score=44.65  Aligned_cols=26  Identities=27%  Similarity=0.281  Sum_probs=22.3

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhc
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      -.+.-.+++.||+++|||+|.++|..
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHH
Confidence            35557899999999999999999864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.003  Score=45.03  Aligned_cols=29  Identities=24%  Similarity=0.214  Sum_probs=23.1

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcC
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      |.-.+-..+.|.|+||+|||+|...++..
T Consensus        18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          18 GGIETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            33345558899999999999999988754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.65  E-value=0.0032  Score=43.52  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=19.4

Q ss_pred             eEEEeccCCcchHHHHHHHhcC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~   44 (249)
                      =|++.|++|+||||+.-.|...
T Consensus        17 gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc
Confidence            4889999999999999998754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0029  Score=45.27  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=18.0

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .-|++-|+.||||||+++.|..
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3577889999999998888753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.60  E-value=0.0019  Score=49.80  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +-|++.|+||+|||||.+++..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            4799999999999999999864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.52  E-value=0.0029  Score=50.59  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=21.1

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +-+|+++||+|+|||-|.++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            44899999999999999999975

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.50  E-value=0.0032  Score=48.24  Aligned_cols=27  Identities=19%  Similarity=0.084  Sum_probs=24.0

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .|.-.+|+|=|.-||||||+++.|...
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHH
Confidence            467789999999999999999999753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.48  E-value=0.0038  Score=42.87  Aligned_cols=23  Identities=22%  Similarity=0.190  Sum_probs=19.7

Q ss_pred             eEEEeccCCcchHHHHHHHhcCC
Q psy871           23 KLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      =|++.|++|+||||+.-.|....
T Consensus        17 gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            58999999999999998886543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.39  E-value=0.0047  Score=44.91  Aligned_cols=29  Identities=28%  Similarity=0.407  Sum_probs=23.7

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhcC
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      |.-.+...++|.|+||+|||+|+..++.+
T Consensus        21 GGi~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          21 GGFFKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            34455668899999999999999998754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0047  Score=44.84  Aligned_cols=27  Identities=22%  Similarity=0.201  Sum_probs=21.7

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.+-..+.|.|+||+|||||...+...
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            344447889999999999999988643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.36  E-value=0.0043  Score=42.80  Aligned_cols=27  Identities=93%  Similarity=1.371  Sum_probs=22.3

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      ...++.++|.+++|||+|++++....+
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~   38 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRL   38 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999986554

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0044  Score=45.10  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=20.4

Q ss_pred             ceEEEeccCCcchHHHHHHHhcC
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      ..|+|=|..||||||+++.|...
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.29  E-value=0.0039  Score=49.24  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.1

Q ss_pred             eecceEEEeccCCcchHHHHHHHhcC
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      .+.--|+|.||.||||||.+.++...
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhh
Confidence            34456999999999999999999864

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.17  E-value=0.0048  Score=44.91  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=19.1

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .|+|+|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999954

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.10  E-value=0.006  Score=44.50  Aligned_cols=27  Identities=26%  Similarity=0.172  Sum_probs=21.6

Q ss_pred             ceecceEEEeccCCcchHHHHHHHhcC
Q psy871           18 WTKSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        18 ~~~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      -.+-..++|.|+||+|||||.-.++..
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            344447889999999999999888643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.0065  Score=46.29  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.6

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .++++||+|+|||.|...|..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999999985

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.02  E-value=0.012  Score=39.72  Aligned_cols=26  Identities=46%  Similarity=0.664  Sum_probs=22.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      -++.++|.+++|||||++++.++.+.
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~~~   31 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGEVV   31 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCc
Confidence            47899999999999999999887653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.00  E-value=0.0041  Score=47.00  Aligned_cols=20  Identities=20%  Similarity=0.496  Sum_probs=18.0

Q ss_pred             eEEEeccCCcchHHHHHHHh
Q psy871           23 KLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~   42 (249)
                      --+++|+-||||||++.+|.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            45899999999999999984

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.83  E-value=0.0068  Score=45.24  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=20.5

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ....|+|+|+.|.|||||...+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998864

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.76  E-value=0.0075  Score=43.75  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=21.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcCC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDDR   45 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~~   45 (249)
                      +--.+.|.|+||+|||+|...++..-
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            33478899999999999999987543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.0083  Score=46.53  Aligned_cols=22  Identities=27%  Similarity=0.229  Sum_probs=18.4

Q ss_pred             ecceEEEeccCCcchHHHHHHH
Q psy871           20 KSGKLLFLGLDNAGKTTLLHML   41 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l   41 (249)
                      .....+|.|+||+||||++..+
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHH
Confidence            3568999999999999988554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.62  E-value=0.0087  Score=42.78  Aligned_cols=22  Identities=41%  Similarity=0.543  Sum_probs=19.2

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .-|++=|.-||||||+++.|..
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999999864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.0075  Score=47.55  Aligned_cols=19  Identities=16%  Similarity=0.499  Sum_probs=17.3

Q ss_pred             EEEeccCCcchHHHHHHHh
Q psy871           24 LLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~   42 (249)
                      -+|+|+-||||||++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5799999999999999984

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.50  E-value=0.018  Score=43.73  Aligned_cols=27  Identities=33%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             ceecc-eEEEeccCCcchHHHHHHHhcC
Q psy871           18 WTKSG-KLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        18 ~~~~~-~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +.++. .++++||+|+|||.+.+.|...
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHH
Confidence            34454 6788899999999999998753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.018  Score=39.44  Aligned_cols=25  Identities=36%  Similarity=0.505  Sum_probs=22.2

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcC
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDD   89 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~   89 (249)
                      .++.+.++|.+++|||||++++.+.
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCC
Confidence            5677899999999999999999864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.45  E-value=0.011  Score=45.26  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=21.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +-.+|.|=|..|+||||+++.|..
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHH
Confidence            346999999999999999999975

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.43  E-value=0.007  Score=45.49  Aligned_cols=20  Identities=30%  Similarity=0.419  Sum_probs=15.4

Q ss_pred             ceEEEeccCCcchHHH-HHHH
Q psy871           22 GKLLFLGLDNAGKTTL-LHML   41 (249)
Q Consensus        22 ~~i~vvG~~~~GKStl-l~~l   41 (249)
                      .-++|+|+||+||||. ++++
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHH
Confidence            3478999999999975 4543

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.42  E-value=0.18  Score=35.62  Aligned_cols=63  Identities=10%  Similarity=0.087  Sum_probs=34.8

Q ss_pred             EEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc-EEEEEecCCCC
Q psy871          115 IVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP-VLILGNKIDKH  190 (249)
Q Consensus       115 ~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  190 (249)
                      .++++|+|......  ..      ..+..+|.+++|...+.. +.......+... ..   .+.+ +-+|.||.+..
T Consensus       111 D~viiD~~~~~~~~--~~------~~l~~ad~v~~v~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~iv~N~~~~~  174 (232)
T d1hyqa_         111 DILLLDAPAGLERS--AV------IAIAAAQELLLVVNPEIS-SITDGLKTKIVA-ER---LGTKVLGVVVNRITTL  174 (232)
T ss_dssp             SEEEEECCSSSSHH--HH------HHHHHSSEEEEEECSSHH-HHHHHHHHHHHH-HH---HTCEEEEEEEEEECTT
T ss_pred             ceeeecccccccch--hH------HHhhhhheeeeecccccc-chhhhhhhhhhh-hh---cccccccccccccccc
Confidence            37789998744221  11      223568999998887543 333333232222 22   2344 44789998743

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.34  E-value=0.012  Score=43.65  Aligned_cols=23  Identities=13%  Similarity=0.143  Sum_probs=19.2

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ---++|.|+||+|||||+..+..
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            34578999999999999988863

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.014  Score=42.44  Aligned_cols=25  Identities=28%  Similarity=0.146  Sum_probs=20.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHhcC
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKDD   44 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~~   44 (249)
                      +-..+.|.|+||+|||+|...+...
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3348899999999999999988753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.20  E-value=0.011  Score=45.11  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=19.9

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+|+|=|.-||||||+++.|..
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCcCCCHHHHHHHHHH
Confidence            4799999999999999999964

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.19  E-value=0.013  Score=43.48  Aligned_cols=28  Identities=18%  Similarity=0.369  Sum_probs=23.4

Q ss_pred             ccceecceEEEeccCCcchHHHHHHHhc
Q psy871           16 GLWTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        16 ~~~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...++-.+.+.|++++|||+|++.+..
T Consensus        99 ~~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_          99 KKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            3335677889999999999999999975

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.16  E-value=0.032  Score=38.21  Aligned_cols=26  Identities=38%  Similarity=0.477  Sum_probs=22.9

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCC
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      .++.+.++|.+++||||+++++.+..
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999998654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.12  E-value=0.01  Score=41.95  Aligned_cols=45  Identities=9%  Similarity=-0.001  Sum_probs=27.2

Q ss_pred             ccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecCC
Q psy871          139 TDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKID  188 (249)
Q Consensus       139 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  188 (249)
                      ..+......++++|++....-  .+..+.++...   .+.+++++.++++
T Consensus        79 ~~~~~~~~~~vi~d~~~~~~~--~r~~~~~~~~~---~~~~~~~~~~~~~  123 (213)
T d1bifa1          79 KFLSEEGGHVAVFDATNTTRE--RRAMIFNFGEQ---NGYKTFFVESICV  123 (213)
T ss_dssp             HHHHTTCCSEEEEESCCCSHH--HHHHHHHHHHH---HTCEEEEEEECCC
T ss_pred             HHHHhcCCCEEEeecCCccHH--HHHHHHHHHHh---cCCeEEEEEeecc
Confidence            334455667788999875322  22244444443   4678888888876

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.08  E-value=0.022  Score=37.94  Aligned_cols=24  Identities=50%  Similarity=0.761  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCCc
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      ++.++|.+++|||+|++++..+.+
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~~   25 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGEI   25 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            678999999999999999986554

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.03  E-value=0.016  Score=41.55  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=19.3

Q ss_pred             eecceEEEeccCCcchHHHHHHHh
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~   42 (249)
                      .+--.+.|.|+||+|||+|...++
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHH
Confidence            344577889999999999987654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.029  Score=37.99  Aligned_cols=28  Identities=21%  Similarity=0.322  Sum_probs=24.4

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      ..++.++|.+++|||+|++++..+.+..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~   30 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIE   30 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence            4689999999999999999999876653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.97  E-value=0.011  Score=44.80  Aligned_cols=16  Identities=38%  Similarity=0.551  Sum_probs=13.8

Q ss_pred             eEEEeccCCcchHHHH
Q psy871           23 KLLFLGLDNAGKTTLL   38 (249)
Q Consensus        23 ~i~vvG~~~~GKStll   38 (249)
                      .++|.|+|||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4889999999999754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.031  Score=37.41  Aligned_cols=23  Identities=39%  Similarity=0.603  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCC
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      ++.++|.+++|||+|++++.+..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.031  Score=37.77  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ..++.++|.+++|||+|++++.++.+.
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~   29 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFV   29 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            468999999999999999999987654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.033  Score=37.72  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=24.3

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      ..++.++|.+++|||+|++++..+.+..
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~   30 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVE   30 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            4589999999999999999999877653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.018  Score=42.48  Aligned_cols=24  Identities=21%  Similarity=0.145  Sum_probs=20.2

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +.-..+|.|++|+|||||+-.|..
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHH
Confidence            345788999999999999988764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.80  E-value=0.016  Score=44.92  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=21.4

Q ss_pred             ecceEEEeccCCcchHHHHHHHhc
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      +...++++||.|+|||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            456799999999999999999974

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.043  Score=37.06  Aligned_cols=27  Identities=30%  Similarity=0.427  Sum_probs=23.9

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ..++.++|.+++|||+|++++..+.+.
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~   29 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFN   29 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            468999999999999999999987664

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.036  Score=37.31  Aligned_cols=26  Identities=38%  Similarity=0.553  Sum_probs=22.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .++.++|.+++|||+|++++.++.+.
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~   26 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFD   26 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            37899999999999999999977654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.65  E-value=0.044  Score=37.00  Aligned_cols=28  Identities=21%  Similarity=0.432  Sum_probs=24.3

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ...++.++|.+++|||+|++++..+.+.
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~   30 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFD   30 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            4568999999999999999999987664

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.64  E-value=0.036  Score=37.32  Aligned_cols=25  Identities=52%  Similarity=0.817  Sum_probs=21.4

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      -++.++|.+++|||+|++++.+..+
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~~~   27 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGEDV   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCC
Confidence            3788999999999999999976543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.61  E-value=0.019  Score=42.73  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=19.4

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      |++|+|++|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            789999999999999999864

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.53  E-value=0.039  Score=38.74  Aligned_cols=25  Identities=36%  Similarity=0.549  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .+.++|.+++|||++++++....+.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~   26 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYR   26 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC
Confidence            5789999999999999999987654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.042  Score=37.11  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=24.1

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      ..++.++|.+++|||+|++++..+.+..
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~   31 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMA   31 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence            3589999999999999999999876653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.037  Score=37.74  Aligned_cols=28  Identities=21%  Similarity=0.404  Sum_probs=24.0

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .-.++.++|.+++|||+|++++..+.+.
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~   32 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFD   32 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            3468999999999999999999876654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.039  Score=37.60  Aligned_cols=29  Identities=21%  Similarity=0.326  Sum_probs=24.5

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      ...++.++|.+++|||+|++++..+.+..
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~   33 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQSYFVS   33 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCS
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhCCCCc
Confidence            34589999999999999999999876643

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.021  Score=45.26  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=18.9

Q ss_pred             cceEEEeccCCcchHHHHHHHh
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~   42 (249)
                      ..-++|+|++|||||+++..+.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            3458999999999999988766

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.21  E-value=0.043  Score=36.93  Aligned_cols=25  Identities=16%  Similarity=0.389  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ++.++|.+++|||+|++++..+.+.
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~~~~   28 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKGIFT   28 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCC
Confidence            6889999999999999999976654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.18  E-value=0.034  Score=37.82  Aligned_cols=27  Identities=41%  Similarity=0.671  Sum_probs=23.0

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      ...++.++|.+++|||+|++++....+
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~   40 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEV   40 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCC
Confidence            446899999999999999999986543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.067  Score=36.18  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=24.4

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ...++.++|.+++|||+|++++..+.+.
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~   32 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFH   32 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            4568999999999999999999987654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.16  E-value=0.029  Score=35.76  Aligned_cols=25  Identities=8%  Similarity=-0.019  Sum_probs=21.4

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ++-..|.+.|.+||||||+-++|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            3456799999999999999999953

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.055  Score=36.64  Aligned_cols=26  Identities=15%  Similarity=0.316  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .++.++|.+++|||+|++++..+.+.
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f~   28 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTFR   28 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            58899999999999999999987654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.051  Score=36.84  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=23.6

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ..++.++|.+++|||+|++++..+.+.
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~   31 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFV   31 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            458999999999999999999987654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.97  E-value=0.058  Score=36.22  Aligned_cols=26  Identities=31%  Similarity=0.387  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .++.++|.+++|||+|++++..+.+.
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~~~~   28 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAGRFP   28 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            47899999999999999999987654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.044  Score=37.31  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=22.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .++.++|.+++|||+|++++..+.+.
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~   29 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQ   29 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCC
Confidence            58999999999999999999876553

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.05  Score=36.70  Aligned_cols=28  Identities=29%  Similarity=0.483  Sum_probs=24.2

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ...++.++|.+++|||+|++++..+.+.
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~   30 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFV   30 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            4568999999999999999999877654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.92  E-value=0.052  Score=36.74  Aligned_cols=28  Identities=21%  Similarity=0.348  Sum_probs=24.5

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      +-.++.++|.+++|||+|++++..+.+.
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~   30 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFV   30 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            4568999999999999999999887764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.052  Score=36.97  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .++.++|.+++|||+|++++.++.+.
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~   30 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFN   30 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            58999999999999999999876553

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.90  E-value=0.047  Score=37.53  Aligned_cols=25  Identities=28%  Similarity=0.587  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ++.++|.+++|||+|++++.++.+.
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~~f~   28 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNKKFS   28 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCC
Confidence            6889999999999999999987654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.79  E-value=0.058  Score=36.47  Aligned_cols=28  Identities=29%  Similarity=0.460  Sum_probs=24.0

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      .-++.++|.+++|||+|++++..+.+..
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~   30 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE   30 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCc
Confidence            3488999999999999999999877653

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=92.73  E-value=0.029  Score=36.95  Aligned_cols=17  Identities=41%  Similarity=0.489  Sum_probs=13.8

Q ss_pred             EEeccCCcchHH-HHHHH
Q psy871           25 LFLGLDNAGKTT-LLHML   41 (249)
Q Consensus        25 ~vvG~~~~GKSt-ll~~l   41 (249)
                      +++||-.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            578999999999 55554

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.67  E-value=0.063  Score=36.31  Aligned_cols=27  Identities=33%  Similarity=0.516  Sum_probs=23.3

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ..++.++|.+++|||+|++++..+.+.
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~   31 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFT   31 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCC
Confidence            358999999999999999999876654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.064  Score=36.79  Aligned_cols=29  Identities=24%  Similarity=0.291  Sum_probs=24.5

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCccc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ   93 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~~   93 (249)
                      ..-++.++|.+++|||+|++++..+.+..
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~   32 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPG   32 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCc
Confidence            34489999999999999999999877643

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.49  E-value=0.068  Score=36.17  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=24.5

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      +..++.++|.+++|||+|++++..+.+.
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~   30 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFV   30 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            4578999999999999999999987654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.49  E-value=0.061  Score=36.52  Aligned_cols=25  Identities=36%  Similarity=0.671  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ++.++|.+++|||+|++++....+.
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~~~~   28 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVNDKYS   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHcCCCC
Confidence            6889999999999999999876654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.071  Score=36.34  Aligned_cols=28  Identities=32%  Similarity=0.548  Sum_probs=24.0

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      +.-++.++|.+++|||+|++++.++.+.
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~   33 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFD   33 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            4458999999999999999999876654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.075  Score=35.91  Aligned_cols=28  Identities=32%  Similarity=0.426  Sum_probs=23.8

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ...++.++|.+++|||++++++..+.+.
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~   32 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFL   32 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            3468999999999999999999876653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.45  E-value=0.07  Score=37.24  Aligned_cols=25  Identities=36%  Similarity=0.628  Sum_probs=21.9

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCC
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      .+.+.++|.+++|||+|++++.++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999998654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.28  E-value=0.033  Score=37.93  Aligned_cols=26  Identities=54%  Similarity=0.841  Sum_probs=22.0

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      .-++.++|.+++|||+|++++..+.+
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~~~~   41 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLASEDI   41 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCSCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34889999999999999999976543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.15  E-value=0.053  Score=36.74  Aligned_cols=22  Identities=36%  Similarity=0.594  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhcC
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDD   89 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~   89 (249)
                      .+.+.|.+++|||+|++++.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.072  Score=35.97  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ++.++|.+++|||+|++++..+.+.
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~~f~   28 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTKRFI   28 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC
Confidence            7889999999999999999987764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.071  Score=36.17  Aligned_cols=26  Identities=31%  Similarity=0.544  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .++.++|.+++|||++++++..+.+.
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~   31 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFK   31 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            57999999999999999999877654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.08  E-value=0.025  Score=38.83  Aligned_cols=27  Identities=30%  Similarity=0.463  Sum_probs=21.9

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ..++.++|.+++|||+|++++......
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~~~   42 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQKSL   42 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCce
Confidence            468999999999999999999876543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.076  Score=35.93  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=23.5

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ..++.++|.+++|||+|++++..+.+.
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~   31 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFP   31 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            358999999999999999999977654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.00  E-value=0.019  Score=38.54  Aligned_cols=23  Identities=35%  Similarity=0.661  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCC
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      ++.++|.+++|||||++++.+..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999998543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.99  E-value=0.043  Score=37.72  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCC
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      .++.++|.+++|||||++++.+..
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~   25 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAK   25 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEEC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999997543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.063  Score=36.29  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      .++.++|.+++|||+|++++.+..+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~   26 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVED   26 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC--
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCcc
Confidence            4789999999999999999986543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.092  Score=35.82  Aligned_cols=28  Identities=25%  Similarity=0.344  Sum_probs=24.6

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      +.-++.++|.+++|||+|++++....+.
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~   31 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQ   31 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            4569999999999999999999987664

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.48  E-value=0.056  Score=38.96  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.0

Q ss_pred             cceEEEeccCCcchHHHHHHHhc
Q psy871           21 SGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        21 ~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..-++|.||-.+||||+++.+.-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            45689999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.35  E-value=0.067  Score=36.54  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCC
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      .+.++|.+++|||||++++.+..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.092  Score=35.71  Aligned_cols=26  Identities=35%  Similarity=0.500  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .++.++|.+++|||+|++++..+.+.
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~   28 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFP   28 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            47899999999999999999987664

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.30  E-value=0.077  Score=38.56  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.1

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .-|+|.|++|+||+++.+.+..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3479999999999999999964

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.28  E-value=0.083  Score=36.24  Aligned_cols=26  Identities=42%  Similarity=0.517  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      -++.++|.+++|||+|++++.++.+.
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~   31 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFN   31 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCC
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCC
Confidence            58999999999999999999977654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.12  Score=34.92  Aligned_cols=27  Identities=19%  Similarity=0.325  Sum_probs=23.0

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      ...++.++|.+++|||+|++++.....
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcC
Confidence            357899999999999999999986543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.17  E-value=0.068  Score=39.24  Aligned_cols=27  Identities=22%  Similarity=0.174  Sum_probs=21.6

Q ss_pred             cceecceEEEeccCCcchHHHHHHHhc
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .-.+-..+.+.|++++|||||+-.++.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHH
Confidence            334556788999999999999888764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.11  E-value=0.11  Score=35.95  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=23.3

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      -.++.++|.+++|||+|++++..+.+.
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~   32 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYT   32 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCC
Confidence            358999999999999999999876654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.10  E-value=0.087  Score=36.06  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=21.6

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCC
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      .-++.++|.+++|||+|++++.+..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            3478999999999999999998644

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.98  E-value=0.1  Score=35.69  Aligned_cols=26  Identities=35%  Similarity=0.608  Sum_probs=23.2

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .++.++|.+++|||+|++++..+.+.
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~   28 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFP   28 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            47899999999999999999987765

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.84  E-value=0.064  Score=38.38  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=19.0

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      .++|.||-.+||||+++.+.-
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHH
Confidence            589999999999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=90.83  E-value=0.11  Score=34.73  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=22.6

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      -++.+.|.+++|||+|++++....+.
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~   28 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFN   28 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            47889999999999999999876654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.73  E-value=0.072  Score=39.28  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=18.9

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      |++++|++|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            599999999999999888854

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=0.11  Score=35.77  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      ++.++|.+++|||+|++++..+.+.
T Consensus         5 KvvllG~~~vGKTSli~r~~~~~f~   29 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTNKFP   29 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCC
Confidence            7899999999999999999987664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.46  E-value=0.076  Score=36.23  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhcC
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDD   89 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~   89 (249)
                      ++.++|.+++|||++++++.+.
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=90.30  E-value=0.062  Score=36.80  Aligned_cols=26  Identities=50%  Similarity=0.661  Sum_probs=21.6

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCC
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      ...++.++|.+++|||++++++....
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~~   41 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIGE   41 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34588999999999999999986543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.96  E-value=0.42  Score=31.74  Aligned_cols=101  Identities=17%  Similarity=0.227  Sum_probs=59.8

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcccccCCcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhcccccc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLA  144 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~  144 (249)
                      ....+.+.-+|.+|                   .......+..++++.++.++++|....+.+.................
T Consensus        47 ~~~~~~~~i~Dt~G-------------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  107 (166)
T d1g16a_          47 NGKKVKLQIWDTAG-------------------QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE  107 (166)
T ss_dssp             SSCEEEEEEECCTT-------------------GGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CCEEEEEEEEECCC-------------------chhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCc
Confidence            34455666677774                   34445566677888999999999999887777665544444444444


Q ss_pred             ceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCcEEEEEecC
Q psy871          145 SSIVFLVDTSDRERFEESKSELQCLLTDESLASCPVLILGNKI  187 (249)
Q Consensus       145 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  187 (249)
                      ..++++....+...-....+....+...   .+.|++-+-.|.
T Consensus       108 ~~~i~~~~k~d~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~  147 (166)
T d1g16a_         108 AQLLLVGNKSDMETRVVTADQGEALAKE---LGIPFIESSAKN  147 (166)
T ss_dssp             CEEEEEEECTTCTTCCSCHHHHHHHHHH---HTCCEEECBTTT
T ss_pred             ceeeeecchhhhhhhhhhHHHHHHHHHh---cCCeEEEECCCC
Confidence            4555555555433322233344444433   457776554443

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.21  E-value=0.18  Score=37.59  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=22.4

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      .-++.++|.|++|||||++++++...
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~   35 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVL   35 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCC
Confidence            44789999999999999999997543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=89.13  E-value=0.12  Score=35.68  Aligned_cols=24  Identities=21%  Similarity=0.483  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCC
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      .++.++|.+++|||||++++.+..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCC
Confidence            478999999999999999998654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.97  E-value=0.085  Score=34.16  Aligned_cols=23  Identities=13%  Similarity=-0.002  Sum_probs=17.9

Q ss_pred             ecceEEEeccCCcchHHHHHHHh
Q psy871           20 KSGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStll~~l~   42 (249)
                      .....+|.+|.|+|||+++-.+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            34466889999999999886554

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=88.93  E-value=0.15  Score=34.77  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             eceEEEEcCCCCchhHHHHHHhc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKD   88 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~   88 (249)
                      .-++.++|.+++|||||++++.+
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHH
Confidence            34789999999999999999985

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.83  E-value=0.21  Score=36.27  Aligned_cols=26  Identities=23%  Similarity=0.460  Sum_probs=22.4

Q ss_pred             eceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           66 SGKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        66 ~~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      .-++.++|.+++|||+++|.+.+...
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~~   57 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGERV   57 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCc
Confidence            34789999999999999999987654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.79  E-value=0.13  Score=38.15  Aligned_cols=21  Identities=24%  Similarity=0.229  Sum_probs=18.5

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      |++++|++|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            789999999999999887754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.33  E-value=0.21  Score=34.19  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=21.8

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      -++.++|..++|||+++.++....+
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~~   27 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIHG   27 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4889999999999999999976544

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.82  E-value=0.18  Score=32.70  Aligned_cols=19  Identities=32%  Similarity=0.246  Sum_probs=15.8

Q ss_pred             EEeccCCcchHHHHHHHhc
Q psy871           25 LFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        25 ~vvG~~~~GKStll~~l~~   43 (249)
                      +++||-.|||||-|-+...
T Consensus         6 li~GpMfsGKTt~Li~~~~   24 (133)
T d1xbta1           6 VILGPMFSGKSTELMRRVR   24 (133)
T ss_dssp             EEECCTTSCHHHHHHHHHH
T ss_pred             EEEecccCHHHHHHHHHHH
Confidence            5789999999998877643

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.73  E-value=0.21  Score=34.18  Aligned_cols=20  Identities=25%  Similarity=0.311  Sum_probs=18.2

Q ss_pred             EEEeccCCcchHHHHHHHhc
Q psy871           24 LLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        24 i~vvG~~~~GKStll~~l~~   43 (249)
                      ++|+|.+.||||.+...|..
T Consensus         2 iLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHHh
Confidence            68999999999999999864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.51  E-value=0.23  Score=36.42  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=20.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ..-.-+.+.|++++|||+|.-.++.
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHH
Confidence            4455788999999999999988764

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.35  E-value=0.15  Score=37.61  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=18.0

Q ss_pred             eEEEeccCCcchHHHHHHHhc
Q psy871           23 KLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        23 ~i~vvG~~~~GKStll~~l~~   43 (249)
                      |++|+|++|+|||+|+..+..
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHh
Confidence            688999999999999977543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.29  E-value=0.22  Score=37.41  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCchhHHHHHHhcCC
Q psy871           68 KLLFLGLDNAGKTTLLHMLKDDR   90 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~~~   90 (249)
                      ++.++|.|++|||++++++++..
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            68899999999999999998654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.79  E-value=0.27  Score=35.97  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=20.4

Q ss_pred             cceecceEEEeccCCcchHHHHHHHh
Q psy871           17 LWTKSGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        17 ~~~~~~~i~vvG~~~~GKStll~~l~   42 (249)
                      ....-.-+.+.|++++|||||+-.+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHH
Confidence            33445577899999999999986665

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.72  E-value=0.24  Score=34.56  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=18.6

Q ss_pred             ceEEEeccC-CcchHHHHHHHhc
Q psy871           22 GKLLFLGLD-NAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~-~~GKStll~~l~~   43 (249)
                      .|+.|.|.- |+||||+.-.|..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            378899994 9999999888864

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.38  E-value=0.24  Score=32.37  Aligned_cols=18  Identities=22%  Similarity=0.183  Sum_probs=15.3

Q ss_pred             EEeccCCcchHHHHHHHh
Q psy871           25 LFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        25 ~vvG~~~~GKStll~~l~   42 (249)
                      +++||-.|||||-|-+..
T Consensus        11 lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1          11 VIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEEeccccHHHHHHHHHH
Confidence            578999999999877765

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.33  E-value=0.16  Score=37.89  Aligned_cols=16  Identities=50%  Similarity=0.764  Sum_probs=13.8

Q ss_pred             eEEEeccCCcchHHHH
Q psy871           23 KLLFLGLDNAGKTTLL   38 (249)
Q Consensus        23 ~i~vvG~~~~GKStll   38 (249)
                      .-++.|.+|+|||||-
T Consensus        16 ~alfFGLSGTGKTTLs   31 (313)
T d2olra1          16 VAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            4579999999999965

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=84.94  E-value=0.41  Score=35.08  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=21.4

Q ss_pred             ceEEEEcCCCCchhHHHHHHhcCCc
Q psy871           67 GKLLFLGLDNAGKTTLLHMLKDDRL   91 (249)
Q Consensus        67 ~~~~~~g~~~~Gkssl~~~l~~~~~   91 (249)
                      -++.++|.|++||||++++++....
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~   27 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGI   27 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCC
Confidence            3788999999999999999997553

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.80  E-value=0.18  Score=37.84  Aligned_cols=16  Identities=50%  Similarity=0.764  Sum_probs=13.9

Q ss_pred             eEEEeccCCcchHHHH
Q psy871           23 KLLFLGLDNAGKTTLL   38 (249)
Q Consensus        23 ~i~vvG~~~~GKStll   38 (249)
                      .-++.|.+|+|||||-
T Consensus        16 valffGLSGTGKTTLs   31 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEEECTTSCHHHHT
T ss_pred             EEEEEccCCCCccccc
Confidence            4589999999999965

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.46  E-value=0.62  Score=34.34  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=24.0

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhcCCcc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKDDRLA   92 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~~~~~   92 (249)
                      .-.++.++|.-.+|||++++++.+..+.
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~l   52 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcC
Confidence            3457899999999999999999987753

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.91  E-value=0.3  Score=33.96  Aligned_cols=25  Identities=16%  Similarity=0.097  Sum_probs=21.9

Q ss_pred             eecceEEEeccCCcchHHHHHHHhc
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~~   43 (249)
                      ...+.+++.|++|+|||++...|..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999874

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=83.74  E-value=0.32  Score=32.65  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKD   88 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~   88 (249)
                      -..++.+.|.+++|||++.++|..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999875

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=83.62  E-value=0.23  Score=32.88  Aligned_cols=18  Identities=28%  Similarity=0.514  Sum_probs=15.8

Q ss_pred             ecceEEEeccCCc-chHHH
Q psy871           20 KSGKLLFLGLDNA-GKTTL   37 (249)
Q Consensus        20 ~~~~i~vvG~~~~-GKStl   37 (249)
                      ++.+|+|+|..|| |++||
T Consensus         1 ~pK~I~IlGsTGSIG~~tL   19 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTL   19 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHH
Confidence            3579999999999 99987

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.18  E-value=0.23  Score=37.25  Aligned_cols=16  Identities=50%  Similarity=0.762  Sum_probs=14.2

Q ss_pred             eEEEeccCCcchHHHH
Q psy871           23 KLLFLGLDNAGKTTLL   38 (249)
Q Consensus        23 ~i~vvG~~~~GKStll   38 (249)
                      .-++.|.+|+|||||-
T Consensus        16 ~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            4579999999999997

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.18  E-value=0.34  Score=35.18  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=18.8

Q ss_pred             ceEEEeccCCcchHHHHHHHhc
Q psy871           22 GKLLFLGLDNAGKTTLLHMLKD   43 (249)
Q Consensus        22 ~~i~vvG~~~~GKStll~~l~~   43 (249)
                      .+|+|.|.-|+||||+.-.|..
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~   23 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH
Confidence            3688999999999999988764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.15  E-value=0.4  Score=32.82  Aligned_cols=19  Identities=42%  Similarity=0.801  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCchhHHHHHH
Q psy871           68 KLLFLGLDNAGKTTLLHML   86 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l   86 (249)
                      ++.++|.+++|||++++++
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7889999999999999998

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.05  E-value=0.39  Score=35.20  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=19.7

Q ss_pred             eecceEEEeccCCcchHHHHHHHh
Q psy871           19 TKSGKLLFLGLDNAGKTTLLHMLK   42 (249)
Q Consensus        19 ~~~~~i~vvG~~~~GKStll~~l~   42 (249)
                      +.++.|.+.|.-|+||||+.-.|.
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHH
Confidence            446688899999999999777665

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=82.08  E-value=0.21  Score=31.95  Aligned_cols=18  Identities=28%  Similarity=0.069  Sum_probs=14.1

Q ss_pred             ecceEEEeccCCcchHHH
Q psy871           20 KSGKLLFLGLDNAGKTTL   37 (249)
Q Consensus        20 ~~~~i~vvG~~~~GKStl   37 (249)
                      +..+++|.+++|+|||..
T Consensus         6 ~~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             TTCEEEECCCTTSSTTTT
T ss_pred             cCCcEEEEcCCCCChhHH
Confidence            345778889999999943

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=81.34  E-value=0.74  Score=33.54  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             eeceEEEEcCCCCchhHHHHHHhc
Q psy871           65 KSGKLLFLGLDNAGKTTLLHMLKD   88 (249)
Q Consensus        65 ~~~~~~~~g~~~~Gkssl~~~l~~   88 (249)
                      ....+.++|.+++|||+++..+..
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHH
Confidence            345788999999999999887764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.07  E-value=1.6  Score=29.00  Aligned_cols=59  Identities=14%  Similarity=0.257  Sum_probs=33.9

Q ss_pred             CcccceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCC
Q psy871           97 TLHPTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSD  155 (249)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~  155 (249)
                      |.......+..+++.+++.++++|.....++......+..........-.+++|..-.+
T Consensus        64 G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D  122 (173)
T d2fu5c1          64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD  122 (173)
T ss_dssp             --------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--
T ss_pred             CchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEeccc
Confidence            33444455667788899999999999988887776665555444333344444544443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=80.75  E-value=0.57  Score=30.89  Aligned_cols=21  Identities=43%  Similarity=0.493  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCchhHHHHHHhc
Q psy871           68 KLLFLGLDNAGKTTLLHMLKD   88 (249)
Q Consensus        68 ~~~~~g~~~~Gkssl~~~l~~   88 (249)
                      -+.++|.+++|||+|++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            367899999999999999874

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.25  E-value=1  Score=29.98  Aligned_cols=84  Identities=10%  Similarity=0.086  Sum_probs=49.2

Q ss_pred             cceeceeccccccceEEEEEeCCCchhhhhhHHHHhhhhccccccceEEEEEECCChhhhHhhHHHHHHHHhccCCCCCc
Q psy871          100 PTRRVWKDYFPAVDAIVFLVDTSDRERFEESKSELQCLLTDESLASSIVFLVDTSDRERFEESKSELQCLLTDESLASCP  179 (249)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~v~D~~g~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  179 (249)
                      .....+..++.++++.++++|....+++..+..++........... +++|..-.|...-.... ........   .+.|
T Consensus        64 ~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~-~~~~~~~~---~~~~  138 (170)
T d1i2ma_          64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVKA-KSIVFHRK---KNLQ  138 (170)
T ss_dssp             HHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCC-EEEEEECCCCSCSCCTT-TSHHHHSS---CSSE
T ss_pred             ccceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCc-eeeecchhhhhhhhhhh-HHHHHHHH---cCCE
Confidence            3444556678889999999999999999988887766655444333 34454444321111111 11122222   5677


Q ss_pred             EEEEEecCC
Q psy871          180 VLILGNKID  188 (249)
Q Consensus       180 ~ivv~nK~D  188 (249)
                      ++-+-.|..
T Consensus       139 ~~e~Sak~~  147 (170)
T d1i2ma_         139 YYDISAKSN  147 (170)
T ss_dssp             EEEEBTTTT
T ss_pred             EEEEeCCCC
Confidence            776655543