Psyllid ID: psy8733
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 621 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VAN0 | 364 | Probable phosphoserine am | yes | N/A | 0.475 | 0.810 | 0.490 | 6e-95 | |
| Q99K85 | 370 | Phosphoserine aminotransf | yes | N/A | 0.484 | 0.813 | 0.468 | 2e-90 | |
| Q9Y617 | 370 | Phosphoserine aminotransf | yes | N/A | 0.484 | 0.813 | 0.463 | 2e-90 | |
| P10658 | 370 | Phosphoserine aminotransf | yes | N/A | 0.478 | 0.802 | 0.452 | 4e-87 | |
| Q820S0 | 368 | Phosphoserine aminotransf | yes | N/A | 0.516 | 0.872 | 0.396 | 2e-76 | |
| C1D8N3 | 359 | Phosphoserine aminotransf | yes | N/A | 0.473 | 0.818 | 0.406 | 7e-75 | |
| Q3SK88 | 359 | Phosphoserine aminotransf | yes | N/A | 0.500 | 0.866 | 0.399 | 4e-72 | |
| A6V2Q8 | 361 | Phosphoserine aminotransf | yes | N/A | 0.473 | 0.814 | 0.401 | 7e-72 | |
| P91856 | 370 | Probable phosphoserine am | yes | N/A | 0.475 | 0.797 | 0.406 | 1e-71 | |
| Q02PX3 | 361 | Phosphoserine aminotransf | yes | N/A | 0.470 | 0.808 | 0.401 | 6e-71 |
| >sp|Q9VAN0|SERC_DROME Probable phosphoserine aminotransferase OS=Drosophila melanogaster GN=CG11899 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 348 bits (894), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 187/381 (49%), Positives = 235/381 (61%), Gaps = 86/381 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
VINF AGPAKLP EVL+EV+E L++ +GISVMEMSHRS++Y KI++ T + LRELLNV
Sbjct: 2 VINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNV 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+ NYKIL +QGGGTG FAAVA+NLIG+
Sbjct: 62 PS-------------------------------NYKILLMQGGGTGQFAAVALNLIGK-- 88
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
TG+ A Y+ +
Sbjct: 89 ------TGT---------------------------------------ADYV-------I 96
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
GSWS KAA EA +YG VN V+PK++KY ++P Q TW DP ASY+YYCDNETV+GVEF+
Sbjct: 97 TGSWSAKAAKEAAQYGTVNAVLPKLAKYTTVPRQETWKLDPNASYVYYCDNETVEGVEFD 156
Query: 292 YIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
++P+ G+PLV+DMSSNFLSR FDVSKFGVI AGAQKNIGPAG TV+IVR+DL+ L
Sbjct: 157 FVPEVPAGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLK 216
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
ITP++ +F+ NNS+ NTPPTF ++V+ VF WIKR GG+A M + + KS L+Y I
Sbjct: 217 ITPSILNFEQMDKNNSLLNTPPTFGIYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTI 276
Query: 411 DNSDKFYECPVQAGCRSRMNV 431
+ S+ FY CPV RSRMNV
Sbjct: 277 NQSNGFYYCPVDVNVRSRMNV 297
|
Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine. Drosophila melanogaster (taxid: 7227) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 5EC: 2 |
| >sp|Q99K85|SERC_MOUSE Phosphoserine aminotransferase OS=Mus musculus GN=Psat1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (855), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/384 (46%), Positives = 228/384 (59%), Gaps = 83/384 (21%)
Query: 48 AAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRE 107
A V+NFG GPAKLP VL E+++ LLDY GISV+EMSHRS+D+ KI +T+ +RE
Sbjct: 3 ATKQVVNFGPGPAKLPHSVLLEIQKQLLDYRGLGISVLEMSHRSSDFAKIIGNTENLVRE 62
Query: 108 LLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI 167
LL VP NNYK++F+QGGG+G F+AV +NLI
Sbjct: 63 LLAVP-------------------------------NNYKVIFVQGGGSGQFSAVPLNLI 91
Query: 168 GRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCD 227
G KA A+ YV
Sbjct: 92 GL--------------KAGRSAD--------------YV--------------------- 102
Query: 228 NETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287
V G+WS KAA EA+K+G VN+V PK+ Y IPD STWN +P+ASY+Y+C NETV G
Sbjct: 103 ---VTGAWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTWNLNPDASYVYFCANETVHG 159
Query: 288 VEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEY 347
VEF+++PD +G LV DMSSNFLSR DVSKFGVI AGAQKN+G AG+TVVIVR+DLL +
Sbjct: 160 VEFDFVPDVKGAVLVCDMSSNFLSRPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGF 219
Query: 348 ALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY 407
+L P+V +K+ A NNS+YNTPP F ++V+ V WIK GG A ME+ S KS ++Y
Sbjct: 220 SLRECPSVLDYKVQAGNNSLYNTPPCFSIYVMGMVLEWIKNNGGAAAMEKLSSIKSQMIY 279
Query: 408 QEIDNSDKFYECPVQAGCRSRMNV 431
+ IDNS FY CPV+ RSRMN+
Sbjct: 280 EIIDNSQGFYVCPVERQNRSRMNI 303
|
Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|Q9Y617|SERC_HUMAN Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 333 bits (855), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 178/384 (46%), Positives = 227/384 (59%), Gaps = 83/384 (21%)
Query: 48 AAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRE 107
A V+NFG GPAKLP VL E+++ LLDY+ GISV+EMSHRS+D+ KI N+T+ +RE
Sbjct: 3 APRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRE 62
Query: 108 LLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI 167
LL VP+ NYK++FLQGGG G F+AV +NLI
Sbjct: 63 LLAVPD-------------------------------NYKVIFLQGGGCGQFSAVPLNLI 91
Query: 168 GRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCD 227
G K G+ C
Sbjct: 92 GL---------------------KAGR-------------------------------CA 99
Query: 228 NETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287
+ V G+WS KAA EA+K+G +N+V PK+ Y IPD STWN +P+ASY+YYC NETV G
Sbjct: 100 DYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHG 159
Query: 288 VEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEY 347
VEF++IPD +G LV DMSSNFLS+ DVSKFGVI AGAQKN+G AG+TVVIVR+DLL +
Sbjct: 160 VEFDFIPDVKGAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGF 219
Query: 348 ALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY 407
AL P+V +K+ A N+S+YNTPP F ++V+ V WIK GG A ME+ S KS +Y
Sbjct: 220 ALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIY 279
Query: 408 QEIDNSDKFYECPVQAGCRSRMNV 431
+ IDNS FY CPV+ RS+MN+
Sbjct: 280 EIIDNSQGFYVCPVEPQNRSKMNI 303
|
Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|P10658|SERC_RABIT Phosphoserine aminotransferase OS=Oryctolagus cuniculus GN=PSAT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (826), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 172/380 (45%), Positives = 224/380 (58%), Gaps = 83/380 (21%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
++NFG GPAKLP VL E+++ LLDY+ GISV+EMSHRS+D+ KI N+T+ +RELL V
Sbjct: 7 IVNFGPGPAKLPHSVLLEIQKELLDYKGLGISVLEMSHRSSDFAKIVNNTENLVRELLAV 66
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+ NYK++FLQGGG G F+AV +
Sbjct: 67 PD-------------------------------NYKVIFLQGGGCGQFSAVPL------- 88
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
NL+ K + C + V
Sbjct: 89 ------------------------NLIGLKPGR---------------------CADYVV 103
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
G+WS KAA EA+K+G VN+V PK+ Y IPD STWN +P+ASY+YYC NETV GVEF+
Sbjct: 104 TGAWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFD 163
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
++PD +G LV DMSSNFLSR DVSKFGVI AGAQKN+G AG+TVVIVR+DLL +AL
Sbjct: 164 FVPDVKGAILVCDMSSNFLSRPVDVSKFGVIFAGAQKNVGAAGVTVVIVRDDLLGFALRE 223
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
P+V +K+ A ++S+YNTPP F ++V+ V WIK GG A M++ S KS ++Y+ ID
Sbjct: 224 CPSVLEYKVQATSSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMKKLSTIKSQMIYEIID 283
Query: 412 NSDKFYECPVQAGCRSRMNV 431
NS FY CPV+ RS MN+
Sbjct: 284 NSQGFYVCPVEPRNRSMMNI 303
|
Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|Q820S0|SERC_NITEU Phosphoserine aminotransferase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=serC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 168/424 (39%), Positives = 229/424 (54%), Gaps = 103/424 (24%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
+ NF AGPA LP EVLE+ +E +LD+ +G+SVMEMSHR ++ I ++T++ALREL
Sbjct: 4 IYNFSAGPAVLPEEVLEQAREEMLDWHGSGMSVMEMSHRGKEFMSIADETESALREL--- 60
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
+P++YK+LFLQGG + FA V MNL+G
Sbjct: 61 ----------------------------AGIPDHYKVLFLQGGASSQFAMVPMNLLG--- 89
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
K GK + YV+
Sbjct: 90 -------------------KKGKAD--------YVNT----------------------- 99
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSK-YVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290
G WS KA +EA+ YG V + S + S+P + W+ P+A+Y++Y NET+ GVEF
Sbjct: 100 -GQWSAKAISEAKNYGSVQIAASSESDGFNSVPPLAQWHISPDAAYVHYASNETIGGVEF 158
Query: 291 NYIPD-------SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVRED 343
+ PD ++ IPLV+DMSSNFLSR FDVSKFG+I AGAQKN+GPAG+ VVIVRED
Sbjct: 159 QWTPDLSAVAGDNKNIPLVADMSSNFLSRPFDVSKFGLIYAGAQKNVGPAGLVVVIVRED 218
Query: 344 LLEYA-LPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQK 402
LL+ L TP +F +K +ADN S+YNTPPT+ ++++ V W+K+QGGL +EQ ++ K
Sbjct: 219 LLDIPPLAGTPAMFRYKTHADNASMYNTPPTYAIYIMGLVMEWLKKQGGLTAIEQRNIAK 278
Query: 403 SVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFF-----FGVIIAGAQ 457
+ L+Y ID S FY CPV RSRMNV FT S AF G+I
Sbjct: 279 AKLIYDLIDVS-SFYHCPVNQADRSRMNVP---FTLSDPGLDDAFLKQAQAHGLIQLKGH 334
Query: 458 KNIG 461
+++G
Sbjct: 335 RSVG 338
|
Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine. Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) (taxid: 228410) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|C1D8N3|SERC_LARHH Phosphoserine aminotransferase OS=Laribacter hongkongensis (strain HLHK9) GN=serC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (721), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 210/381 (55%), Gaps = 87/381 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
+ NF AGPA LP++VL E + L D+ +G+SVMEMSHR ++ I+ +A LRELL +
Sbjct: 3 IYNFSAGPALLPQDVLREAQRELTDWHGSGMSVMEMSHRGREFMSIHARAEADLRELLQI 62
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+N Y++LFLQGG F+ V M
Sbjct: 63 PDN-------------------------------YRVLFLQGGAHSQFSMVPM------- 84
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
NL+ K + A Y+ +
Sbjct: 85 ------------------------NLLRGKTT----------------ADYV-------I 97
Query: 232 DGSWSKKAAAEAEKYGKVNLVIP-KVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290
G W K A EA YG + + + S + IP QS W +P+A+YL+Y NET+ GV+F
Sbjct: 98 TGHWGKVAIKEARCYGDMRIAATGEASGFNGIPPQSEWQPNPDAAYLHYVSNETIGGVQF 157
Query: 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
+IP+S G+PLV DMSS+FLSR DVS+FG+I AGAQKNIGPAG+T+VIVREDLL LP
Sbjct: 158 PFIPES-GVPLVCDMSSDFLSRPVDVSRFGLIFAGAQKNIGPAGLTLVIVREDLLGQTLP 216
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
TPT+F +KI+AD +S+YNTPPT+ +++ VF W+K GG+ ++ + +K+ LLY I
Sbjct: 217 GTPTMFDYKIHADADSMYNTPPTYAIYMAGLVFQWLKDNGGVRGIQMRNEEKAGLLYHTI 276
Query: 411 DNSDKFYECPVQAGCRSRMNV 431
D+SD FY CPV CRSRMNV
Sbjct: 277 DSSDGFYRCPVDVECRSRMNV 297
|
Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine. Laribacter hongkongensis (strain HLHK9) (taxid: 557598) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|Q3SK88|SERC_THIDA Phosphoserine aminotransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=serC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (697), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 211/401 (52%), Gaps = 90/401 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
+ NF AGPA LP++VL++V+ L+D+ +G+SVMEMSHR ++ I + +A LREL
Sbjct: 3 IYNFSAGPAVLPKDVLQQVQAELVDWHGSGMSVMEMSHRGKEFMGIAAEAEADLREL--- 59
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
M +P NYK+LFLQGG + FA V MNL+ G
Sbjct: 60 ----------------------------MAIPANYKVLFLQGGASSQFAMVPMNLL--RG 89
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
KA A YL
Sbjct: 90 KA---------------------------------------------SADYLN------- 97
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVS-IPDQSTWNRDPEASYLYYCDNETVDGVEF 290
G WSKKA EA+KY VN+V + S P Q W DP A+Y++Y NET+ GVE
Sbjct: 98 TGEWSKKAIKEAKKYAAVNVVASSEDRNFSYAPTQDRWKLDPNAAYVHYTPNETIGGVEI 157
Query: 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
+ P++ +P+ +DMSS LSR DVSK+GVI AGAQKNIGPAG+T+VIVREDL+ +
Sbjct: 158 FWTPEAGDVPIAADMSSTILSRPIDVSKYGVIYAGAQKNIGPAGLTIVIVREDLMGETVA 217
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
TPT+F +KI+ADN S+YNTP TF ++ VF W+K +GGLA ME+ + +K+ LLY+ +
Sbjct: 218 GTPTMFDYKIHADNESMYNTPATFAMYTAGLVFKWLKARGGLAGMEKINREKAALLYEAL 277
Query: 411 DNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFFGV 451
D +D FY PV RS MNV FT AF G
Sbjct: 278 DATD-FYASPVAKDNRSLMNVP---FTLKDAALDEAFLKGA 314
|
Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine. Thiobacillus denitrificans (strain ATCC 25259) (taxid: 292415) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|A6V2Q8|SERC_PSEA7 Phosphoserine aminotransferase OS=Pseudomonas aeruginosa (strain PA7) GN=serC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (695), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 153/381 (40%), Positives = 204/381 (53%), Gaps = 87/381 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
NF AGPA LP VL+ + LLD+ G+SVMEMSHRS DY I + + LR+LL++
Sbjct: 5 AFNFCAGPAALPDAVLQRAQAELLDWRGKGLSVMEMSHRSDDYVAIASKAEHDLRDLLDI 64
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P++ YK+LFLQGG + FA + +NL+
Sbjct: 65 PSD-------------------------------YKVLFLQGGASQQFAEIPLNLL---- 89
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
PE Y D
Sbjct: 90 ----------------------------------------------PEDGVADYIDT--- 100
Query: 232 DGSWSKKAAAEAEKYGKVNLVI-PKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290
G WSKKA EA +YG+VN+ K Y +IP Q+ WN +A+Y++Y NET+ G+EF
Sbjct: 101 -GIWSKKAIEEARRYGRVNVAASAKEYDYFAIPGQNEWNLTKDAAYVHYASNETIGGLEF 159
Query: 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
++IP++ G+PLV+DMSS+ LSR DVS+FG+I AGAQKNIGP+G+ VVIVREDLL A
Sbjct: 160 DWIPETGGVPLVTDMSSDILSRPLDVSRFGLIYAGAQKNIGPSGLVVVIVREDLLGRARS 219
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
PT+ ++KI ADN S+YNTP T+ ++ VF W+K QGG+ ME+ + K LLY+ I
Sbjct: 220 ACPTMLNYKIAADNGSMYNTPATYSWYLSGLVFEWLKEQGGVTAMERRNRAKKDLLYKTI 279
Query: 411 DNSDKFYECPVQAGCRSRMNV 431
D SD FY P+Q RS MNV
Sbjct: 280 DASD-FYTNPIQPSARSWMNV 299
|
Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine. Pseudomonas aeruginosa (strain PA7) (taxid: 381754) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|P91856|SERC_CAEEL Probable phosphoserine aminotransferase OS=Caenorhabditis elegans GN=F26H9.5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (693), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 207/381 (54%), Gaps = 86/381 (22%)
Query: 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP 112
INF AGPAKLP EVL +++E L++ + G+SV+EMSHRS ++ + N+T + +REL
Sbjct: 8 INFAAGPAKLPEEVLLKMQEEQLNFNNLGVSVIEMSHRSKEFGALLNETISLIREL---- 63
Query: 113 NNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGK 172
MNVP+N++ILF+QGGGTG FAA+ +NL K
Sbjct: 64 ---------------------------MNVPDNFEILFMQGGGTGQFAAIPLNL-----K 91
Query: 173 ADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 232
D+ A Y+ V
Sbjct: 92 GDH------------------------------------------EHADYI-------VT 102
Query: 233 GSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN- 291
G+WS KAA EA KY V V YV++PDQ W D +A+YLYYC NETV G+EF
Sbjct: 103 GAWSSKAADEAGKYINVKKVFQPSKPYVTVPDQENWVHDEKAAYLYYCANETVHGIEFTP 162
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
P+S +PLV+D+SSNF++R FD GV+ GAQKN+G AG+T+VIVR+DL+ I
Sbjct: 163 TAPESHNVPLVADVSSNFMARPFDFKDHGVVFGGAQKNLGAAGLTIVIVRKDLIGKQQAI 222
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
TP+VF +K NNS+YNTPPT ++ V WIK +GGL + + +LQKS ++Y ID
Sbjct: 223 TPSVFSYKEMIANNSLYNTPPTGGIYTTNLVLKWIKSKGGLQAIYELNLQKSGMIYDIID 282
Query: 412 NSDKFYECPVQAGCRSRMNVT 432
NS+ FY C V RS MNV
Sbjct: 283 NSNGFYHCAVDKRYRSIMNVC 303
|
Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 5 EC: 2 |
| >sp|Q02PX3|SERC_PSEAB Phosphoserine aminotransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=serC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 152/379 (40%), Positives = 202/379 (53%), Gaps = 87/379 (22%)
Query: 54 NFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPN 113
NF AGPA LP VL+ + LLD+ G+SVMEMSHRS DY I + + LR+LL++P+
Sbjct: 7 NFCAGPAALPDAVLQRAQAELLDWRGKGLSVMEMSHRSDDYVAIASKAEQDLRDLLDIPS 66
Query: 114 NYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKA 173
+ YK+LFLQGG + FA + +NL+
Sbjct: 67 D-------------------------------YKVLFLQGGASQQFAEIPLNLL------ 89
Query: 174 DYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 233
PE Y D G
Sbjct: 90 --------------------------------------------PEDGVADYIDT----G 101
Query: 234 SWSKKAAAEAEKYGKVNLVI-PKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292
WSKKA EA +YG VN+ K Y +IP Q+ W +A+Y++Y NET+ G+EF++
Sbjct: 102 IWSKKAIEEARRYGTVNVAASAKEYDYFAIPGQNEWTLTKDAAYVHYASNETIGGLEFDW 161
Query: 293 IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPIT 352
IP++ +PLV+DMSS+ LSR DVS+FG+I AGAQKNIGP+G+ VVIVREDLL A +
Sbjct: 162 IPETGDVPLVTDMSSDILSRPLDVSRFGLIYAGAQKNIGPSGLVVVIVREDLLGRARSVC 221
Query: 353 PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412
PT+ ++KI ADN S+YNTP T+ ++ VF W+K QGG+ MEQ + K LLY+ ID
Sbjct: 222 PTMLNYKIAADNGSMYNTPATYSWYLSGLVFEWLKEQGGVTAMEQRNRAKKDLLYKTIDA 281
Query: 413 SDKFYECPVQAGCRSRMNV 431
SD FY P+Q RS MNV
Sbjct: 282 SD-FYTNPIQPSARSWMNV 299
|
Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine. Pseudomonas aeruginosa (strain UCBPP-PA14) (taxid: 208963) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 5 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 621 | ||||||
| 170043457 | 362 | phosphoserine aminotransferase [Culex qu | 0.475 | 0.814 | 0.507 | 1e-101 | |
| 91077286 | 368 | PREDICTED: similar to phosphoserine amin | 0.481 | 0.812 | 0.493 | 5e-99 | |
| 427779351 | 409 | Putative phosphoserine aminotransferase | 0.542 | 0.823 | 0.488 | 1e-98 | |
| 158293896 | 364 | AGAP004598-PA [Anopheles gambiae str. PE | 0.475 | 0.810 | 0.486 | 5e-97 | |
| 289739613 | 364 | phosphoserine aminotransferase [Glossina | 0.475 | 0.810 | 0.503 | 3e-96 | |
| 332373556 | 368 | unknown [Dendroctonus ponderosae] | 0.481 | 0.812 | 0.484 | 8e-96 | |
| 194744461 | 364 | GF16606 [Drosophila ananassae] gi|190627 | 0.475 | 0.810 | 0.501 | 1e-94 | |
| 94468534 | 362 | phosphoserine aminotransferase [Aedes ae | 0.475 | 0.814 | 0.505 | 2e-93 | |
| 195449525 | 364 | GK22671 [Drosophila willistoni] gi|19416 | 0.475 | 0.810 | 0.485 | 3e-93 | |
| 21356589 | 364 | CG11899 [Drosophila melanogaster] gi|195 | 0.475 | 0.810 | 0.490 | 4e-93 |
| >gi|170043457|ref|XP_001849403.1| phosphoserine aminotransferase [Culex quinquefasciatus] gi|167866799|gb|EDS30182.1| phosphoserine aminotransferase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/380 (50%), Positives = 236/380 (62%), Gaps = 85/380 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
VINFGAGPAKLPREVL EV++ L++Y S+G+SVMEMSHR A Y K++N+T RELL V
Sbjct: 2 VINFGAGPAKLPREVLLEVQKELVEYGSSGMSVMEMSHRGATYVKLHNETIELARELLKV 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+N YK+L +QGGGTG+FAAVAMNLIGRTG
Sbjct: 62 PDN-------------------------------YKVLLMQGGGTGLFAAVAMNLIGRTG 90
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
AD YL V
Sbjct: 91 SAD-----------------------------------------------YL-------V 96
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
GSWS KAA EA KYGKVN V+PK +K +PD TW DP ASYLYYCDNET++GVEF+
Sbjct: 97 TGSWSSKAAKEAAKYGKVNQVVPKAAKCTCVPDPKTWKLDPNASYLYYCDNETIEGVEFD 156
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
++P++ G+PLV DMSSN +SR D+ KFGVI A AQKNIGP+GIT+VIVREDL+ + +PI
Sbjct: 157 FVPETNGVPLVVDMSSNMMSRPVDIKKFGVIFACAQKNIGPSGITLVIVREDLIGHQMPI 216
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
TPT+ F I A +NS+ NTPPT +++++ RVFAWIKRQGGL K+ Q SL KS L+Y I
Sbjct: 217 TPTILDFSIVAKDNSINNTPPTLIIYIMGRVFAWIKRQGGLDKLYQASLTKSALIYDVIA 276
Query: 412 NSDKFYECPVQAGCRSRMNV 431
S FY CPV++ RSRMNV
Sbjct: 277 ASKDFYYCPVESKVRSRMNV 296
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91077286|ref|XP_974471.1| PREDICTED: similar to phosphoserine aminotransferase [Tribolium castaneum] gi|270001676|gb|EEZ98123.1| hypothetical protein TcasGA2_TC000542 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 190/385 (49%), Positives = 237/385 (61%), Gaps = 86/385 (22%)
Query: 48 AAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRE 107
++H +NFGAGPAKLPREVL EV+ LL Y+ +G+S+MEMSHR +YTKINND Q A+RE
Sbjct: 3 SSHSALNFGAGPAKLPREVLAEVQTELLSYQDSGMSLMEMSHRGKEYTKINNDAQKAIRE 62
Query: 108 LLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI 167
LLNVP +NYK+LF+QGGGTG FAAVA+NL+
Sbjct: 63 LLNVP-------------------------------DNYKVLFMQGGGTGAFAAVALNLM 91
Query: 168 GRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCD 227
NR A Y
Sbjct: 92 -----------------------------------------------NRTGVADY----- 99
Query: 228 NETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287
V G+WS KAA EA KYGKVNLV PK K SIP +S+W +P+ASY+YYCDNETVDG
Sbjct: 100 --AVTGTWSSKAAKEAAKYGKVNLVFPKADKPGSIPPESSWTLNPDASYVYYCDNETVDG 157
Query: 288 VEFNYIPDS-QGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLE 346
VEF +IP S G+P+VSDMSS+ +++K D+SKFG I+AGAQKNIGPAG+TVVI+REDLL
Sbjct: 158 VEFPFIPTSPHGVPIVSDMSSSIMTKKIDISKFGCIVAGAQKNIGPAGVTVVIIREDLLG 217
Query: 347 YALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLL 406
+ I PTVF F + + NSV+NTP TF V+V+++V WIK+ GGL ME S KS LL
Sbjct: 218 NPMKICPTVFDFTVISQQNSVHNTPATFSVYVMEKVLQWIKKNGGLQAMENQSQDKSKLL 277
Query: 407 YQEIDNSDKFYECPVQAGCRSRMNV 431
Y+E++NS+ FY CP+ CRSR+NV
Sbjct: 278 YEEMENSNNFYSCPIDENCRSRINV 302
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427779351|gb|JAA55127.1| Putative phosphoserine aminotransferase [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/379 (48%), Positives = 246/379 (64%), Gaps = 42/379 (11%)
Query: 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP 112
+NF AGP+ +P EVL+ +E +LDY+ G SVME+SHRSA++ +I +A LR+L+ +P
Sbjct: 6 LNFSAGPSAVPLEVLQIAQEEMLDYKGCGASVMELSHRSAEFAEIVETAEADLRDLMGIP 65
Query: 113 NNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGK 172
+NYK++FLQGGGTG F+A+ +NL G+ K
Sbjct: 66 SNYKVIFLQGGGTGQFSAIPLNLCPR-----------------------------GKEQK 96
Query: 173 ADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 232
ADYV+TG+WS KAA EAE + +VN V+PKV K+V IP QS W P+A+YLYYCDNET+
Sbjct: 97 ADYVITGTWSAKAAKEAEAHIQVNKVLPKVDKHVGIPPQSEWKCSPDAAYLYYCDNETIH 156
Query: 233 GSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292
G + N V S +V IP QS W P+A+YLYYCDNET+ GVEFN+
Sbjct: 157 GV-------------EFNFVPDSGSXHVGIPPQSEWKCSPDAAYLYYCDNETIHGVEFNF 203
Query: 293 IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPIT 352
+PDS +PLV DMSSN L+R DVSK+GVI AGAQKN+G AG+TVVIVREDL+
Sbjct: 204 VPDSGSVPLVCDMSSNILTRPVDVSKYGVIFAGAQKNLGMAGVTVVIVREDLITPPATHC 263
Query: 353 PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412
P+V +KINA+N S+YNTPPT+ ++++ V WIKR GG+ M + S +KS L+Y+ D
Sbjct: 264 PSVLSYKINAENKSLYNTPPTYAIYILGLVLKWIKRNGGVEGMAKRSAEKSRLIYELFDK 323
Query: 413 SDKFYECPVQAGCRSRMNV 431
S+ FY C V RSR+N+
Sbjct: 324 SNGFYVCNVDRAHRSRVNI 342
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158293896|ref|XP_557484.2| AGAP004598-PA [Anopheles gambiae str. PEST] gi|157016523|gb|EAL40174.2| AGAP004598-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 185/380 (48%), Positives = 237/380 (62%), Gaps = 85/380 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
VINFGAGPAKLPREVL EV++ L++Y ++G+SVMEMSHR Y ++++T A ++ELL+V
Sbjct: 2 VINFGAGPAKLPREVLVEVQKDLVEYGTSGMSVMEMSHRGNTYVALHDNTLALVKELLDV 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+ NYKIL +QGGGTG+FAAVAMNLIG+TG
Sbjct: 62 PD-------------------------------NYKILLMQGGGTGLFAAVAMNLIGKTG 90
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
KAD YL V
Sbjct: 91 KAD-----------------------------------------------YL-------V 96
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
GSWS AA EA +YG VN V+PK KY I D + W DPEASY+YYCDNET+ G+EF+
Sbjct: 97 TGSWSSMAAKEAARYGTVNWVVPKQDKYTGIADPTQWKLDPEASYVYYCDNETIGGIEFD 156
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
+P++ G+PLV DMSSN +SR+ D+ KFGVI A AQKNIGP+GIT+VIVREDL+ +A+PI
Sbjct: 157 SVPETNGVPLVVDMSSNMMSRRIDIKKFGVIFACAQKNIGPSGITLVIVREDLIGHAMPI 216
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
TPT+F F + A NS+ NTPPTF+++V+ RVFAWIKR GG+ +M + S+ KS L+Y +
Sbjct: 217 TPTIFDFSVIAKANSISNTPPTFIIYVMGRVFAWIKRNGGVDEMYRQSMVKSQLIYDVVA 276
Query: 412 NSDKFYECPVQAGCRSRMNV 431
S+ FY CPV+A RSRMNV
Sbjct: 277 KSNGFYFCPVEAKVRSRMNV 296
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|289739613|gb|ADD18554.1| phosphoserine aminotransferase [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 192/381 (50%), Positives = 231/381 (60%), Gaps = 86/381 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
VINF AGPAKLP EVL+EV+ +LL+ TGISVMEMSHRS+ Y KI D LRE+LNV
Sbjct: 2 VINFAAGPAKLPEEVLKEVQTSLLNCHGTGISVMEMSHRSSTYEKIQKDAIKCLREILNV 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P NYK++ +QGGGTG FAAVA NL+GRTG
Sbjct: 62 PP-------------------------------NYKVILMQGGGTGQFAAVAFNLLGRTG 90
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
V+ YV V
Sbjct: 91 ------------------------------VADYV------------------------V 96
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
GSWS KAA EA +YGKVN+V+PKV+KY S+P TW D A+Y+YYCDNETVDGVEF+
Sbjct: 97 TGSWSAKAAKEAAQYGKVNMVLPKVAKYTSVPRFETWKLDANAAYVYYCDNETVDGVEFD 156
Query: 292 YIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
++P+ S GIPLV DMSSNFLSRK DVSK+GVI AGAQKNIGPAGITV+I REDLL + +
Sbjct: 157 FVPEISNGIPLVCDMSSNFLSRKVDVSKYGVIFAGAQKNIGPAGITVIIAREDLLGHQMK 216
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
TP+V ++ + N+S+ NTPPTFV++V+ VF WIKR GGL M +NS KS L+Y I
Sbjct: 217 ETPSVLNYALMEKNDSLLNTPPTFVIYVMGLVFQWIKRNGGLEGMAKNSYNKSHLIYSII 276
Query: 411 DNSDKFYECPVQAGCRSRMNV 431
D S+ FY CPV+ RSRMNV
Sbjct: 277 DQSNGFYYCPVEKNVRSRMNV 297
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332373556|gb|AEE61919.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 186/384 (48%), Positives = 230/384 (59%), Gaps = 85/384 (22%)
Query: 48 AAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRE 107
++ +NFGAGPAKLPREVL EV++ +L Y++TG+S+MEMSHRS +Y KIN Q ++RE
Sbjct: 3 SSQSALNFGAGPAKLPREVLAEVQDEILSYQNTGMSLMEMSHRSKEYGKINKSAQDSIRE 62
Query: 108 LLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI 167
LL VP+ NYKILF+QGGG G FAAVAMN +
Sbjct: 63 LLKVPD-------------------------------NYKILFIQGGGLGAFAAVAMNFM 91
Query: 168 GRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCD 227
RTG +A Y
Sbjct: 92 SRTG-----------------------------------------------KADY----- 99
Query: 228 NETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287
V G+WS KAA EAEKYG VNLV PK+ K SIPDQSTW P+ASY YYCDNETVDG
Sbjct: 100 --AVTGTWSGKAAKEAEKYGDVNLVFPKLEKPGSIPDQSTWTLRPDASYFYYCDNETVDG 157
Query: 288 VEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEY 347
VEF YIP++ G+P+V DMSSN ++RK +VSKFG I GAQKNIGPAG+ VVIVR+DLL
Sbjct: 158 VEFPYIPETNGVPIVVDMSSNIMTRKVEVSKFGCIFGGAQKNIGPAGVVVVIVRDDLLGA 217
Query: 348 ALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY 407
A+ + PTVF+F + +NSV NTP TF V+V+++V WIK+ GG+ ME S +KS LLY
Sbjct: 218 AMKVCPTVFNFTLVHKDNSVLNTPATFSVYVMEKVLQWIKQHGGVENMETQSGRKSGLLY 277
Query: 408 QEIDNSDKFYECPVQAGCRSRMNV 431
+ I S FY CP+ CRSR+NV
Sbjct: 278 ETIKTSGNFYSCPINENCRSRINV 301
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194744461|ref|XP_001954712.1| GF16606 [Drosophila ananassae] gi|190627749|gb|EDV43273.1| GF16606 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 191/381 (50%), Positives = 234/381 (61%), Gaps = 86/381 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
VINF AGPAKLP EVL+EV+ LL+ +GISVMEMSHRS++Y KI LRELLNV
Sbjct: 2 VINFAAGPAKLPEEVLKEVQANLLNCNGSGISVMEMSHRSSNYGKIQETAINDLRELLNV 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+NYKIL +QGGGTG FAAVA+NLIG
Sbjct: 62 -------------------------------PSNYKILLMQGGGTGQFAAVALNLIG--- 87
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
+TGS A Y+ +
Sbjct: 88 -----ITGS---------------------------------------ADYV-------I 96
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
GSWS KAA EA +YGKVN VIPK++KY ++P QSTW DP+ASY+YYCDNETV+GVEF+
Sbjct: 97 TGSWSSKAAKEAAQYGKVNAVIPKLAKYTTVPRQSTWQLDPKASYVYYCDNETVEGVEFD 156
Query: 292 YIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
+IP+ +G+PLV+DMSSNFLSR FDVSKFGVI AGAQKNIGPAG TV+IVREDL+ L
Sbjct: 157 FIPEVPEGVPLVADMSSNFLSRPFDVSKFGVIFAGAQKNIGPAGTTVIIVREDLIGKHLK 216
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
TP++ +F++ N+S+ NTPPTF ++V+ VF WIK GG+A ME+ S KS L+Y I
Sbjct: 217 TTPSILNFELMDKNSSLLNTPPTFGIYVMGLVFKWIKTNGGIAGMEKQSAAKSKLIYDII 276
Query: 411 DNSDKFYECPVQAGCRSRMNV 431
D S+ F+ CPV RSRMNV
Sbjct: 277 DQSEGFFYCPVDTNVRSRMNV 297
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|94468534|gb|ABF18116.1| phosphoserine aminotransferase [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/380 (50%), Positives = 231/380 (60%), Gaps = 85/380 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
VINFGAGPAKLPREVL EV++ L++ S+G+SVMEMSHR + Y K++NDT RELL V
Sbjct: 2 VINFGAGPAKLPREVLLEVQKELVEQGSSGMSVMEMSHRGSSYMKLHNDTVDLARELLKV 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+N YK+L +QGGGTG+FAAVAMNLIGR
Sbjct: 62 PDN-------------------------------YKVLLMQGGGTGLFAAVAMNLIGR-- 88
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
TG+ A Y+ V
Sbjct: 89 ------TGT---------------------------------------ADYV-------V 96
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
GSWS KAA EA KYGKVN V+ K K+ +PDQ W DP+ASY+YYCDNET++GVEFN
Sbjct: 97 TGSWSAKAAKEAAKYGKVNQVVAKPDKFTRVPDQKEWKLDPKASYVYYCDNETIEGVEFN 156
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
PD+ G+PLV DMSSN +SR DV KFGVI AQKNIGPAGIT+VIVREDL+ + LPI
Sbjct: 157 TAPDTNGVPLVVDMSSNIMSRPVDVKKFGVIFGCAQKNIGPAGITLVIVREDLIGHQLPI 216
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
TPT+ F I A +NS+ NTPPTF++HV+ RVFAWIKR GG+ M + SL KS ++Y I
Sbjct: 217 TPTILDFSIVAKDNSINNTPPTFIIHVVGRVFAWIKRHGGVESMYKASLTKSNMVYDVIA 276
Query: 412 NSDKFYECPVQAGCRSRMNV 431
NS FY CPV+ RSRMNV
Sbjct: 277 NSKDFYYCPVERSVRSRMNV 296
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195449525|ref|XP_002072110.1| GK22671 [Drosophila willistoni] gi|194168195|gb|EDW83096.1| GK22671 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 185/381 (48%), Positives = 233/381 (61%), Gaps = 86/381 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
VINF AGPAKLP EVL+EV+ LL+ +GISVMEMSHRS++Y K+ + A LRELLNV
Sbjct: 2 VINFAAGPAKLPEEVLKEVQTNLLNCNGSGISVMEMSHRSSNYAKVQDAALADLRELLNV 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+ NYKIL +QGGGTG FAAVA+NLIG
Sbjct: 62 PS-------------------------------NYKILLMQGGGTGQFAAVALNLIG--- 87
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
+TG+ A Y+ +
Sbjct: 88 -----ITGT---------------------------------------ADYV-------I 96
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
GSWS KAA EA +YGKVN V+PK +KY S+P QSTW DP+ASY+YYCDNETV+GVEF+
Sbjct: 97 TGSWSSKAAKEAAQYGKVNAVLPKAAKYTSVPRQSTWQLDPKASYVYYCDNETVEGVEFD 156
Query: 292 YIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
++P+ + +PLV DMSSNFLSR D+SKFGVI AGAQKNIGPAG+TV+IVR+DL+ L
Sbjct: 157 FVPEVASNVPLVCDMSSNFLSRPIDISKFGVIFAGAQKNIGPAGVTVIIVRDDLIGKHLK 216
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
TP++ +F++ NNS+ NTPPTF ++V+ VF WIK GG+A M + + KS L+Y+ I
Sbjct: 217 STPSILNFELMDKNNSLLNTPPTFGIYVMGLVFKWIKSNGGVAGMAELAKAKSKLIYETI 276
Query: 411 DNSDKFYECPVQAGCRSRMNV 431
D SD FY CP+ RSRMNV
Sbjct: 277 DKSDGFYYCPLDTNVRSRMNV 297
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|21356589|ref|NP_652046.1| CG11899 [Drosophila melanogaster] gi|195574691|ref|XP_002105318.1| GD21426 [Drosophila simulans] gi|8928355|sp|Q9VAN0.1|SERC_DROME RecName: Full=Probable phosphoserine aminotransferase; Short=PSAT; AltName: Full=Phosphohydroxythreonine aminotransferase gi|7301762|gb|AAF56874.1| CG11899 [Drosophila melanogaster] gi|21428990|gb|AAM50214.1| GM02605p [Drosophila melanogaster] gi|66804081|gb|AAY56663.1| unknown [Drosophila melanogaster] gi|66804091|gb|AAY56664.1| unknown [Drosophila simulans] gi|194201245|gb|EDX14821.1| GD21426 [Drosophila simulans] gi|220942800|gb|ACL83943.1| CG11899-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 187/381 (49%), Positives = 235/381 (61%), Gaps = 86/381 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
VINF AGPAKLP EVL+EV+E L++ +GISVMEMSHRS++Y KI++ T + LRELLNV
Sbjct: 2 VINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNV 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+ NYKIL +QGGGTG FAAVA+NLIG+
Sbjct: 62 PS-------------------------------NYKILLMQGGGTGQFAAVALNLIGK-- 88
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
TG+ A Y+ +
Sbjct: 89 ------TGT---------------------------------------ADYV-------I 96
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
GSWS KAA EA +YG VN V+PK++KY ++P Q TW DP ASY+YYCDNETV+GVEF+
Sbjct: 97 TGSWSAKAAKEAAQYGTVNAVLPKLAKYTTVPRQETWKLDPNASYVYYCDNETVEGVEFD 156
Query: 292 YIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
++P+ G+PLV+DMSSNFLSR FDVSKFGVI AGAQKNIGPAG TV+IVR+DL+ L
Sbjct: 157 FVPEVPAGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLK 216
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
ITP++ +F+ NNS+ NTPPTF ++V+ VF WIKR GG+A M + + KS L+Y I
Sbjct: 217 ITPSILNFEQMDKNNSLLNTPPTFGIYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTI 276
Query: 411 DNSDKFYECPVQAGCRSRMNV 431
+ S+ FY CPV RSRMNV
Sbjct: 277 NQSNGFYYCPVDVNVRSRMNV 297
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 621 | ||||||
| ZFIN|ZDB-GENE-030131-5723 | 368 | psat1 "phosphoserine aminotran | 0.331 | 0.559 | 0.558 | 5.6e-105 | |
| FB|FBgn0014427 | 364 | CG11899 [Drosophila melanogast | 0.323 | 0.552 | 0.579 | 2.4e-104 | |
| UNIPROTKB|E2RDN1 | 411 | PSAT1 "Phosphoserine aminotran | 0.331 | 0.501 | 0.553 | 5.6e-103 | |
| UNIPROTKB|E9PSV5 | 370 | Psat1 "Protein Psat1" [Rattus | 0.331 | 0.556 | 0.567 | 9.1e-103 | |
| UNIPROTKB|A6QR28 | 370 | PSAT1 "Phosphoserine aminotran | 0.331 | 0.556 | 0.563 | 1.5e-102 | |
| UNIPROTKB|Q9Y617 | 370 | PSAT1 "Phosphoserine aminotran | 0.331 | 0.556 | 0.553 | 1e-101 | |
| MGI|MGI:2183441 | 370 | Psat1 "phosphoserine aminotran | 0.323 | 0.543 | 0.567 | 3.4e-101 | |
| UNIPROTKB|F1NTK1 | 366 | PSAT1 "Phosphoserine aminotran | 0.323 | 0.549 | 0.577 | 1.6e-95 | |
| UNIPROTKB|J9JHU3 | 336 | PSAT1 "Phosphoserine aminotran | 0.331 | 0.613 | 0.553 | 3.3e-93 | |
| WB|WBGene00009177 | 370 | F26H9.5 [Caenorhabditis elegan | 0.323 | 0.543 | 0.480 | 1.2e-87 |
| ZFIN|ZDB-GENE-030131-5723 psat1 "phosphoserine aminotransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.6e-105, Sum P(3) = 5.6e-105
Identities = 115/206 (55%), Positives = 147/206 (71%)
Query: 226 CDNETVDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285
C + V G+WS YGKVN++ PK+ Y IPD STW+ +P ASY+YYC NETV
Sbjct: 97 CADYLVTGTWSARAAKEAEKYGKVNVIHPKLDSYTKIPDSSTWSLNPSASYVYYCCNETV 156
Query: 286 DGVEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLL 345
GVEFN+IPD++G+ LVSDMSSNFLSR DVSKFG+I AGAQKN+G AG+TVVIVREDL+
Sbjct: 157 HGVEFNFIPDTKGVILVSDMSSNFLSRPVDVSKFGLIFAGAQKNVGCAGVTVVIVREDLI 216
Query: 346 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405
AL P + +++ A NNS+YNTPP F ++++ V WI+ GG ME+ + QKS L
Sbjct: 217 GKALKECPIILDYQVQAGNNSLYNTPPCFSIYIMGLVLEWIRNNGGADAMERLNKQKSAL 276
Query: 406 LYQEIDNSDKFYECPVQAGCRSRMNV 431
+Y I+ S+ FY CPV A CRSRMN+
Sbjct: 277 VYDIINRSNGFYSCPVDAACRSRMNI 302
|
|
| FB|FBgn0014427 CG11899 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 2.4e-104, Sum P(3) = 2.4e-104
Identities = 117/202 (57%), Positives = 148/202 (73%)
Query: 231 VDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290
+ GSWS YG VN V+PK++KY ++P Q TW DP ASY+YYCDNETV+GVEF
Sbjct: 96 ITGSWSAKAAKEAAQYGTVNAVLPKLAKYTTVPRQETWKLDPNASYVYYCDNETVEGVEF 155
Query: 291 NYIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYAL 349
+++P+ G+PLV+DMSSNFLSR FDVSKFGVI AGAQKNIGPAG TV+IVR+DL+ L
Sbjct: 156 DFVPEVPAGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHL 215
Query: 350 PITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409
ITP++ +F+ NNS+ NTPPTF ++V+ VF WIKR GG+A M + + KS L+Y
Sbjct: 216 KITPSILNFEQMDKNNSLLNTPPTFGIYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDT 275
Query: 410 IDNSDKFYECPVQAGCRSRMNV 431
I+ S+ FY CPV RSRMNV
Sbjct: 276 INQSNGFYYCPVDVNVRSRMNV 297
|
|
| UNIPROTKB|E2RDN1 PSAT1 "Phosphoserine aminotransferase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 5.6e-103, Sum P(3) = 5.6e-103
Identities = 114/206 (55%), Positives = 144/206 (69%)
Query: 226 CDNETVDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285
C + V GSWS +G VN+V PK+ Y IPD STWN P+ASY+YYC NETV
Sbjct: 139 CADYVVTGSWSAKAAEEAKKFGTVNVVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETV 198
Query: 286 DGVEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLL 345
GVEF++IPD +G LV DMSSNFLS+ DVSKFGVI AGAQKN+G AG+T+VI+R+DLL
Sbjct: 199 HGVEFDFIPDVKGAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTIVIIRDDLL 258
Query: 346 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405
+AL P+V +K+ A N+S+YNTPP F ++V+ V WIK GG A ME+ S KS +
Sbjct: 259 GFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQM 318
Query: 406 LYQEIDNSDKFYECPVQAGCRSRMNV 431
+Y IDNS FY CPV+ RS+MN+
Sbjct: 319 IYDIIDNSQGFYVCPVETKNRSKMNI 344
|
|
| UNIPROTKB|E9PSV5 Psat1 "Protein Psat1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 9.1e-103, Sum P(3) = 9.1e-103
Identities = 117/206 (56%), Positives = 146/206 (70%)
Query: 226 CDNETVDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285
C + V G+WS +G VN+V PK+ Y IPD STWN +P+ASY+Y+C NETV
Sbjct: 98 CADYVVTGAWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTWNLNPDASYVYFCANETV 157
Query: 286 DGVEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLL 345
GVEF++IPD +G LV DMSSNFLSR DVSKFGVI AGAQKN+G AG+TVVIVR+DLL
Sbjct: 158 HGVEFDFIPDVKGAVLVCDMSSNFLSRPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLL 217
Query: 346 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405
+AL P+V +K+ A NNS+YNTPP F ++V+ V WIK GG A ME+ S KS +
Sbjct: 218 GFALRECPSVLDYKVQAGNNSLYNTPPCFSIYVMDMVLEWIKNNGGAAAMEKLSSVKSQM 277
Query: 406 LYQEIDNSDKFYECPVQAGCRSRMNV 431
+Y+ IDNS FY CPV+ RSRMN+
Sbjct: 278 IYEIIDNSQGFYVCPVERQNRSRMNI 303
|
|
| UNIPROTKB|A6QR28 PSAT1 "Phosphoserine aminotransferase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.5e-102, Sum P(3) = 1.5e-102
Identities = 116/206 (56%), Positives = 144/206 (69%)
Query: 226 CDNETVDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285
C + V GSWS +G VN+V PK+ Y IPD STW +P+ASY+YYC NETV
Sbjct: 98 CADYVVTGSWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTWTLNPDASYVYYCANETV 157
Query: 286 DGVEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLL 345
GVEF++IPD +G LV DMSSNFLSR DVSKFGVI AGAQKN+G AG+TVVI+R+DLL
Sbjct: 158 HGVEFDFIPDVKGAVLVCDMSSNFLSRPVDVSKFGVIFAGAQKNVGSAGVTVVIIRDDLL 217
Query: 346 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405
+AL P+V +K+ A NNS+YNTPP F ++V+ V WIK GG A ME+ S KS +
Sbjct: 218 GFALKECPSVLDYKVQAGNNSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQM 277
Query: 406 LYQEIDNSDKFYECPVQAGCRSRMNV 431
+Y IDNS FY CPV+ RS+MN+
Sbjct: 278 IYDIIDNSQGFYVCPVEPQNRSKMNI 303
|
|
| UNIPROTKB|Q9Y617 PSAT1 "Phosphoserine aminotransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 1.0e-101, Sum P(3) = 1.0e-101
Identities = 114/206 (55%), Positives = 145/206 (70%)
Query: 226 CDNETVDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285
C + V G+WS +G +N+V PK+ Y IPD STWN +P+ASY+YYC NETV
Sbjct: 98 CADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETV 157
Query: 286 DGVEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLL 345
GVEF++IPD +G LV DMSSNFLS+ DVSKFGVI AGAQKN+G AG+TVVIVR+DLL
Sbjct: 158 HGVEFDFIPDVKGAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLL 217
Query: 346 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405
+AL P+V +K+ A N+S+YNTPP F ++V+ V WIK GG A ME+ S KS
Sbjct: 218 GFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQT 277
Query: 406 LYQEIDNSDKFYECPVQAGCRSRMNV 431
+Y+ IDNS FY CPV+ RS+MN+
Sbjct: 278 IYEIIDNSQGFYVCPVEPQNRSKMNI 303
|
|
| MGI|MGI:2183441 Psat1 "phosphoserine aminotransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 605 (218.0 bits), Expect = 3.4e-101, Sum P(3) = 3.4e-101
Identities = 114/201 (56%), Positives = 144/201 (71%)
Query: 231 VDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290
V G+WS +G VN+V PK+ Y IPD STWN +P+ASY+Y+C NETV GVEF
Sbjct: 103 VTGAWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTWNLNPDASYVYFCANETVHGVEF 162
Query: 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
+++PD +G LV DMSSNFLSR DVSKFGVI AGAQKN+G AG+TVVIVR+DLL ++L
Sbjct: 163 DFVPDVKGAVLVCDMSSNFLSRPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFSLR 222
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
P+V +K+ A NNS+YNTPP F ++V+ V WIK GG A ME+ S KS ++Y+ I
Sbjct: 223 ECPSVLDYKVQAGNNSLYNTPPCFSIYVMGMVLEWIKNNGGAAAMEKLSSIKSQMIYEII 282
Query: 411 DNSDKFYECPVQAGCRSRMNV 431
DNS FY CPV+ RSRMN+
Sbjct: 283 DNSQGFYVCPVERQNRSRMNI 303
|
|
| UNIPROTKB|F1NTK1 PSAT1 "Phosphoserine aminotransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 1.6e-95, Sum P(3) = 1.6e-95
Identities = 116/201 (57%), Positives = 142/201 (70%)
Query: 231 VDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290
V G+WS Y KVN+V PK+S Y SIPD TWN +P+ASY+YYC NETV GVEF
Sbjct: 100 VTGAWSAKAAKEAEKYAKVNIVHPKLSAYTSIPDPGTWNLNPDASYVYYCANETVHGVEF 159
Query: 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
+++PD +G LV DMSSNFLSR DVSKFGVI AGAQKN+G AG+TVVIVREDLL +AL
Sbjct: 160 DFVPDVKGAVLVCDMSSNFLSRPVDVSKFGVIFAGAQKNVGCAGVTVVIVREDLLGFALK 219
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
P V +K A N S+YNTPP + ++++ V WIK GG A M++ SL KS ++Y I
Sbjct: 220 ECPVVMDYKTQAVNGSLYNTPPCYSIYIMGLVLEWIKNNGGAAAMDKLSLIKSRMIYDII 279
Query: 411 DNSDKFYECPVQAGCRSRMNV 431
D S+ FY CPV+ RSRMNV
Sbjct: 280 DKSNGFYVCPVEKKNRSRMNV 300
|
|
| UNIPROTKB|J9JHU3 PSAT1 "Phosphoserine aminotransferase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 3.3e-93, Sum P(3) = 3.3e-93
Identities = 114/206 (55%), Positives = 144/206 (69%)
Query: 226 CDNETVDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285
C + V GSWS +G VN+V PK+ Y IPD STWN P+ASY+YYC NETV
Sbjct: 98 CADYVVTGSWSAKAAEEAKKFGTVNVVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETV 157
Query: 286 DGVEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLL 345
GVEF++IPD +G LV DMSSNFLS+ DVSKFGVI AGAQKN+G AG+T+VI+R+DLL
Sbjct: 158 HGVEFDFIPDVKGAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTIVIIRDDLL 217
Query: 346 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405
+AL P+V +K+ A N+S+YNTPP F ++V+ V WIK GG A ME+ S KS +
Sbjct: 218 GFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQM 277
Query: 406 LYQEIDNSDKFYECPVQAGCRSRMNV 431
+Y IDNS FY CPV+ RS+MN+
Sbjct: 278 IYDIIDNSQGFYVCPVETKNRSKMNI 303
|
|
| WB|WBGene00009177 F26H9.5 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 1.2e-87, Sum P(3) = 1.2e-87
Identities = 97/202 (48%), Positives = 127/202 (62%)
Query: 231 VDGSWSXXXXXXXXXYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290
V G+WS Y V V YV++PDQ W D +A+YLYYC NETV G+EF
Sbjct: 101 VTGAWSSKAADEAGKYINVKKVFQPSKPYVTVPDQENWVHDEKAAYLYYCANETVHGIEF 160
Query: 291 N-YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYAL 349
P+S +PLV+D+SSNF++R FD GV+ GAQKN+G AG+T+VIVR+DL+
Sbjct: 161 TPTAPESHNVPLVADVSSNFMARPFDFKDHGVVFGGAQKNLGAAGLTIVIVRKDLIGKQQ 220
Query: 350 PITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409
ITP+VF +K NNS+YNTPPT ++ V WIK +GGL + + +LQKS ++Y
Sbjct: 221 AITPSVFSYKEMIANNSLYNTPPTGGIYTTNLVLKWIKSKGGLQAIYELNLQKSGMIYDI 280
Query: 410 IDNSDKFYECPVQAGCRSRMNV 431
IDNS+ FY C V RS MNV
Sbjct: 281 IDNSNGFYHCAVDKRYRSIMNV 302
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 621 | |||
| PRK05355 | 360 | PRK05355, PRK05355, 3-phosphoserine/phosphohydroxy | 1e-156 | |
| cd00611 | 355 | cd00611, PSAT_like, Phosphoserine aminotransferase | 1e-152 | |
| TIGR01364 | 349 | TIGR01364, serC_1, phosphoserine aminotransferase | 1e-138 | |
| PLN02452 | 365 | PLN02452, PLN02452, phosphoserine transaminase | 1e-127 | |
| COG1932 | 365 | COG1932, SerC, Phosphoserine aminotransferase [Coe | 1e-113 | |
| PRK12462 | 364 | PRK12462, PRK12462, phosphoserine aminotransferase | 3e-80 | |
| PRK05355 | 360 | PRK05355, PRK05355, 3-phosphoserine/phosphohydroxy | 5e-77 | |
| TIGR01364 | 349 | TIGR01364, serC_1, phosphoserine aminotransferase | 1e-74 | |
| cd00611 | 355 | cd00611, PSAT_like, Phosphoserine aminotransferase | 4e-73 | |
| PLN02452 | 365 | PLN02452, PLN02452, phosphoserine transaminase | 6e-67 | |
| COG1932 | 365 | COG1932, SerC, Phosphoserine aminotransferase [Coe | 1e-56 | |
| PRK12462 | 364 | PRK12462, PRK12462, phosphoserine aminotransferase | 5e-41 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 2e-29 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 1e-09 | |
| COG0075 | 383 | COG0075, COG0075, Serine-pyruvate aminotransferase | 6e-08 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 8e-06 | |
| TIGR01366 | 361 | TIGR01366, serC_3, phosphoserine aminotransferase, | 2e-05 | |
| cd06451 | 356 | cd06451, AGAT_like, Alanine-glyoxylate aminotransf | 3e-05 | |
| TIGR03301 | 355 | TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate amin | 0.001 |
| >gnl|CDD|235428 PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 453 bits (1168), Expect = e-156
Identities = 166/386 (43%), Positives = 219/386 (56%), Gaps = 87/386 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
V NF AGPA LP EVLE+ ++ LLD+ +G+SVME+SHRS ++ + + +A LREL
Sbjct: 4 VYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLREL--- 60
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
+N+P+NYK+LFLQGG + FA V MNL+G
Sbjct: 61 ----------------------------LNIPDNYKVLFLQGGASLQFAMVPMNLLGGGK 92
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
KADYV TGSWSKKA EA+KYG+VN+
Sbjct: 93 KADYVDTGSWSKKAIKEAKKYGEVNVA--------------------------------- 119
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
S + + IP W +A+Y++Y NET+DG EF+
Sbjct: 120 ---ASSED-----------------DGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH 159
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
+PD+ +PLV+DMSS+ LSR DVSKFG+I AGAQKNIGPAG+T+VIVREDLL ALP
Sbjct: 160 ELPDTGDVPLVADMSSDILSRPIDVSKFGLIYAGAQKNIGPAGLTIVIVREDLLGRALPS 219
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
P++ +K +ADN+S+YNTPPTF +++ VF W+K QGG+A ME+ + +K+ LLY ID
Sbjct: 220 IPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAID 279
Query: 412 NSDKFYECPVQAGCRSRMNVTDIFFT 437
+SD FY PV RSRMNV F
Sbjct: 280 SSD-FYRNPVAPEDRSRMNVP--FTL 302
|
Length = 360 |
| >gnl|CDD|99736 cd00611, PSAT_like, Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Score = 441 bits (1137), Expect = e-152
Identities = 180/380 (47%), Positives = 230/380 (60%), Gaps = 83/380 (21%)
Query: 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP 112
INF AGPA LP EVLE+ ++ LLD+ G+SVMEMSHRS D+ I N+ ++ LRELLN+P
Sbjct: 1 INFSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIP 60
Query: 113 NNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGK 172
+NYK+LFLQGG TG FAAV +NL+ G G
Sbjct: 61 DNYKVLFLQGGATGQFAAVPLNLL-------------------------------GDKGT 89
Query: 173 ADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 232
ADYVVTG+WS KAA EA++YG V +++
Sbjct: 90 ADYVVTGAWSAKAAKEAKRYGGVVVIV--------------------------------- 116
Query: 233 GSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292
AA E KY K IPD TW+ P+A+Y++YC NET+ GVEF+
Sbjct: 117 ------AAKEEGKYTK-------------IPDVETWDLAPDAAYVHYCSNETIHGVEFDE 157
Query: 293 IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPIT 352
+PD+ G+PLV+DMSSN LSR DVSKFGVI AGAQKN+GPAG+TVVIVR+DLL A IT
Sbjct: 158 VPDTGGVPLVADMSSNILSRPIDVSKFGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKIT 217
Query: 353 PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412
P++ ++K +ADNNS+YNTPPTF ++++ V W+K QGG+ ME+ + QK+ LLY IDN
Sbjct: 218 PSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDN 277
Query: 413 SDKFYECPVQAGCRSRMNVT 432
S+ FY PV RSRMNV
Sbjct: 278 SNGFYRGPVDKRARSRMNVP 297
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. Length = 355 |
| >gnl|CDD|130431 TIGR01364, serC_1, phosphoserine aminotransferase | Back alignment and domain information |
|---|
Score = 406 bits (1045), Expect = e-138
Identities = 166/373 (44%), Positives = 217/373 (58%), Gaps = 84/373 (22%)
Query: 60 AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILF 119
A LP EVLE+ ++ LL++ TG+SVME+SHRS ++ + N+ ++ LRELL
Sbjct: 1 AALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELL---------- 50
Query: 120 LQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTG 179
N+P+NY++LFLQGG TG FAAV +NL+ ADY+VTG
Sbjct: 51 ---------------------NIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTG 89
Query: 180 SWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKA 239
+WSKKAA EA+KYG VN+V S K
Sbjct: 90 AWSKKAAKEAKKYGVVNVV------------------------------------ASGKE 113
Query: 240 AAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNYIPDSQGI 299
Y IPD STW +A+Y++YC NET+ GVEF +PD +
Sbjct: 114 -----------------GNYTKIPDPSTWEISEDAAYVHYCANETIHGVEFRELPDVKNA 156
Query: 300 PLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFK 359
PLV+DMSSN LSR DVSKFG+I AGAQKNIGPAG+TVVIVR+DLL A ITP++ ++K
Sbjct: 157 PLVADMSSNILSRPIDVSKFGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYK 216
Query: 360 INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419
I+A+N+S+YNTPPTF ++V VF W+K QGG+ +E+ + K+ LLY IDNS+ FY
Sbjct: 217 IHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRN 276
Query: 420 PVQAGCRSRMNVT 432
PV RSRMNV
Sbjct: 277 PVDPRNRSRMNVV 289
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266) [Amino acid biosynthesis, Serine family]. Length = 349 |
| >gnl|CDD|178071 PLN02452, PLN02452, phosphoserine transaminase | Back alignment and domain information |
|---|
Score = 379 bits (976), Expect = e-127
Identities = 157/380 (41%), Positives = 211/380 (55%), Gaps = 84/380 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
V NF AGPA LP VL + + L ++E +G+SVMEMSHR ++ I +A LRELL++
Sbjct: 8 VFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDI 67
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+NY++LFLQGG + FAA+ +NL
Sbjct: 68 PDNYEVLFLQGGASTQFAAIPLNLCKP-------------------------------GD 96
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
KAD+VVTGSWSKKAA EA+KY K N++
Sbjct: 97 KADFVVTGSWSKKAAKEAKKYCKTNVI--------------------------------- 123
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
S K KY IP S W P+A +++ C NET+ GVEF
Sbjct: 124 ---ASGKD-----------------EKYTKIPSVSEWELTPDAKFVHICANETIHGVEFK 163
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
PD +PLV+DMSSNFLS+ DVSK+GVI AGAQKN+GP+G+T+VI+R+DL+ A PI
Sbjct: 164 DYPDVGNVPLVADMSSNFLSKPVDVSKYGVIYAGAQKNVGPSGVTIVIIRKDLIGNARPI 223
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
TP + +KI+A+N+S+YNTPP F +++ VF + QGGL ME+ +++K+ LLY ID
Sbjct: 224 TPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAID 283
Query: 412 NSDKFYECPVQAGCRSRMNV 431
S+ FY CPV+ RS MNV
Sbjct: 284 ESNGFYVCPVEKSVRSLMNV 303
|
Length = 365 |
| >gnl|CDD|224843 COG1932, SerC, Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 341 bits (877), Expect = e-113
Identities = 158/389 (40%), Positives = 202/389 (51%), Gaps = 89/389 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
V NF AGPA LP EVL++ ++ LLD+ G+SVME+SHRS ++ + + + LRELLN+
Sbjct: 6 VYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNI 65
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P++YK+LFLQGG TG FA MNL+
Sbjct: 66 PDDYKVLFLQGGATGQFAMAPMNLL--------------------------------GKR 93
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
DYV TG+WS+ A EA+K GK
Sbjct: 94 GTDYVDTGAWSEFAIKEAKKVGKQP----------------------------------- 118
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
K A E+ G Y SIPD S W+ +Y+++C NET+ GVE
Sbjct: 119 -----KLIDARIEEAG-----------YGSIPDLSKWDFSDNDAYVHFCWNETISGVEVP 162
Query: 292 YIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
+PD LV+D SS LSR DVSK+ VI AGAQKN+GPAG+TVVIVR DLLE A
Sbjct: 163 ELPDIGSDGLLVADASSAILSRPIDVSKYDVIYAGAQKNLGPAGLTVVIVRPDLLERAES 222
Query: 351 IT-PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409
T P++F + +ADN S+YNTPPTF +++ VF W+K QGGL +E + K+ LLY
Sbjct: 223 YTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDW 282
Query: 410 IDNSDKFYECPVQAGCRSRMNVTDIFFTF 438
ID SD FY V RSRMNVT FT
Sbjct: 283 IDKSD-FYRNLVAKANRSRMNVT---FTL 307
|
Length = 365 |
| >gnl|CDD|183540 PRK12462, PRK12462, phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 257 bits (658), Expect = 3e-80
Identities = 113/381 (29%), Positives = 179/381 (46%), Gaps = 84/381 (22%)
Query: 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP 112
+NF GP LP VLE+V++ +++ TG+SV+ MSHRS+ ++ + +A LR+LL +P
Sbjct: 6 LNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIP 65
Query: 113 NNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGK 172
+ Y ++FLQGG + F+ + MN
Sbjct: 66 DEYGVVFLQGGSSLQFSMIPMNF------------------------------SRPGAAA 95
Query: 173 ADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 232
+YV TG WS+KA EA + + +V
Sbjct: 96 PEYVTTGYWSRKAIGEASRVAAMRVV---------------------------------- 121
Query: 233 GSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292
W A+ Y ++P + + D A + +Y NETV+G++F
Sbjct: 122 --WDGAASG-----------------YRTLPSLAELDWDARAPFRHYVSNETVEGLQFPD 162
Query: 293 IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPIT 352
PL++DMSS+F+SR FDV +G++ A AQKN+GPAG+TV I+R LLE
Sbjct: 163 AAGLPDSPLIADMSSDFMSRPFDVEAYGMVYAHAQKNLGPAGVTVAIIRRALLERVPDTL 222
Query: 353 PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQEID 411
P + F+ + ++ S YNTPP F ++V+ V WI+ + GG+ M + +K+ +LY +D
Sbjct: 223 PPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLD 282
Query: 412 NSDKFYECPVQAGCRSRMNVT 432
++ +C RS MNV
Sbjct: 283 ALNEVIDCHAHRAARSTMNVA 303
|
Length = 364 |
| >gnl|CDD|235428 PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (637), Expect = 5e-77
Identities = 93/175 (53%), Positives = 120/175 (68%), Gaps = 14/175 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FG+I AGAQKNIGPAG+T+VIVREDLL ALP P++ +K +ADN+S+YNTPPTF +++
Sbjct: 187 FGLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYL 246
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------P------ 556
VF W+K QGG+A ME+ + +K+ LLY ID+SD FY PV P
Sbjct: 247 AGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSD-FYRNPVAPEDRSRMNVPFTLADE 305
Query: 557 -LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
LD+ FL EAKA ++ LKGHR VGG+RASIYNA+ ++ LV FMKEF +H
Sbjct: 306 ELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERRHG 360
|
Length = 360 |
| >gnl|CDD|130431 TIGR01364, serC_1, phosphoserine aminotransferase | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 1e-74
Identities = 90/174 (51%), Positives = 120/174 (68%), Gaps = 13/174 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FG+I AGAQKNIGPAG+TVVIVR+DLL A ITP++ ++KI+A+N+S+YNTPPTF ++V
Sbjct: 176 FGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYV 235
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ-------------AGF 555
VF W+K QGG+ +E+ + K+ LLY IDNS+ FY PV
Sbjct: 236 SGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE 295
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
L++ FLKEA+ ++ LKGHR VGG+RASIYNA+ ++ LV FMKEF+ KH
Sbjct: 296 ELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKKH 349
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266) [Amino acid biosynthesis, Serine family]. Length = 349 |
| >gnl|CDD|99736 cd00611, PSAT_like, Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 4e-73
Identities = 92/170 (54%), Positives = 118/170 (69%), Gaps = 13/170 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FGVI AGAQKN+GPAG+TVVIVR+DLL A ITP++ ++K +ADNNS+YNTPPTF +++
Sbjct: 184 FGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYM 243
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ-------------AGF 555
+ V W+K QGG+ ME+ + QK+ LLY IDNS+ FY PV
Sbjct: 244 MGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE 303
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEF 605
L++ FLKEA+A MI LKGHR VGGIRASIYNA++++ L FMKEF
Sbjct: 304 ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. Length = 355 |
| >gnl|CDD|178071 PLN02452, PLN02452, phosphoserine transaminase | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 6e-67
Identities = 84/175 (48%), Positives = 118/175 (67%), Gaps = 13/175 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
+GVI AGAQKN+GP+G+T+VI+R+DL+ A PITP + +KI+A+N+S+YNTPP F +++
Sbjct: 191 YGVIYAGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYM 250
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
VF + QGGL ME+ +++K+ LLY ID S+ FY CPV+
Sbjct: 251 CGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS 310
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
L+ F+KEA M+QLKGHR VGG+RASIYNA+ + LV FMK+F+ KH+
Sbjct: 311 ELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKHA 365
|
Length = 365 |
| >gnl|CDD|224843 COG1932, SerC, Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 1e-56
Identities = 83/176 (47%), Positives = 108/176 (61%), Gaps = 15/176 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPIT-PTVFHFKINADNNSVYNTPPTFVVH 507
+ VI AGAQKN+GPAG+TVVIVR DLLE A T P++F + +ADN S+YNTPPTF +
Sbjct: 191 YDVIYAGAQKNLGPAGLTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWY 250
Query: 508 VIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAG----------FP- 556
++ VF W+K QGGL +E + K+ LLY ID SD FY V
Sbjct: 251 LLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSD-FYRNLVAKANRSRMNVTFTLVD 309
Query: 557 --LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
LD+ F+ EA+A +I LKGHR VGG+RASIYNA+ +++ L FM F +
Sbjct: 310 AELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEETYK 365
|
Length = 365 |
| >gnl|CDD|183540 PRK12462, PRK12462, phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 5e-41
Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 14/176 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
+G++ A AQKN+GPAG+TV I+R LLE P + F+ + ++ S YNTPP F ++V
Sbjct: 189 YGMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYV 248
Query: 509 IQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAG----------FP- 556
+ V WI+ + GG+ M + +K+ +LY +D ++ +C F
Sbjct: 249 MALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQ 308
Query: 557 --LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
LD LF +++ L GHR +GGIRAS+YNA++ L F+K+F +H+
Sbjct: 309 PRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAIRHA 364
|
Length = 364 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-29
Identities = 60/406 (14%), Positives = 107/406 (26%), Gaps = 104/406 (25%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
+ A + P+ VL+ ++E DY + H + T+ + + + E +N
Sbjct: 1 IYLDSAATTQKPQAVLDALQEYYTDYNGNVHR--GVHHLGKEATQAYEEAREKVAEFINA 58
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P++ +I+F G VA++L S L+ G
Sbjct: 59 PSDEEIIFTSGTTEA-INLVAISLGRS------------LKPGDE--------------- 90
Query: 172 KADYVVTGSWS-KKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 230
+ E K + + V
Sbjct: 91 -ILVTEMEHHANLVPWQELAKRTGATVRVIPV---------------------------D 122
Query: 231 VDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV-- 288
+G D P + V G
Sbjct: 123 PNGLLD--------------------------LDALEKLLTPRTKLVAITHVSNVTGTVN 156
Query: 289 ---EFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGV--IIAGAQKNIGPAGITVVIVRED 343
E + G +V D + R DV GV + K GP GI V+ R D
Sbjct: 157 PVEEIGKLAHEYGALVVVDAAQAVGHRPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRD 216
Query: 344 LLEYALPITPTVFHFKINADNNSVYN---------TPPTFVVHVIQRVFAWIKRQGGLAK 394
LLE P+ + + + TP + + ++ GL
Sbjct: 217 LLEKLPPLLGGGGMIDTVSLQETTFADAPSKFEAGTPNIAGIIGLGAALDYLAE-IGLEA 275
Query: 395 MEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSH 440
+E++ + + LY+ + R ++ F H
Sbjct: 276 IEKHERELAAYLYERLLAIP-GIRLYGPPAERRP-SIISFNFPGVH 319
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 31/171 (18%)
Query: 454 AGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYN---------TPPTF 504
K GP GI V+ R DLLE P+ + + + TP
Sbjct: 197 FSGHKLYGPTGIGVLYGRRDLLEKLPPLLGGGGMIDTVSLQETTFADAPSKFEAGTPNIA 256
Query: 505 VVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD--KFYECPVQA-----GFPL 557
+ + ++ GL +E++ + + LY+ + + Y P + F
Sbjct: 257 GIIGLGAALDYLAE-IGLEAIEKHERELAAYLYERLLAIPGIRLYGPPAERRPSIISFNF 315
Query: 558 D-------ELFLKEAKAH-------NMIQLKGHRLVGGIRASIYNAITVDE 594
L E + L G +RAS+Y T +E
Sbjct: 316 PGVHPHDVATLLDERGIAVRSGHHCAQPLMVRLGLGGTLRASLYFYNTEEE 366
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 73/350 (20%), Positives = 120/350 (34%), Gaps = 110/350 (31%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP +P VL + + + HRS D+ I + LR++ N
Sbjct: 9 LTPGPVPVPPRVLLAMARPM------------VGHRSPDFVGIMKEVLEKLRKVFGTE-N 55
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD 174
++ L G GT M AAVA +L+ K
Sbjct: 56 GDVVLLSGSGTL------------------------------AMEAAVA-SLVEPGDKVL 84
Query: 175 YVVTGSWSKKAAAEAEKYG-KVNLVIPKVSKYVSIPDQ--STWNRDPEASYLYYCDNETV 231
VV G + ++ A AE+YG +V ++ + + V P++ ++DP+ + NET
Sbjct: 85 VVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVD-PEEVEEALDKDPDIKAVAVVHNETS 143
Query: 232 DGSWS--KKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289
G + K+ A A+++G L+I VD V
Sbjct: 144 TGVLNPLKEIAKAAKEHGA--LLI-------------------------------VDAV- 169
Query: 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGV--IIAGAQKNIG-PAGITVVIVREDLLE 346
S+ V ++G+ I G+QK +G P G+ V V E LE
Sbjct: 170 -----------------SSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALE 212
Query: 347 YALPITPTVFHF------KINADNNSVYNTPPTFVVHVIQRVFAWIKRQG 390
F+ K S TPP +++ ++ I +G
Sbjct: 213 AIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEG 262
|
Length = 383 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 38/204 (18%), Positives = 54/204 (26%), Gaps = 53/204 (25%)
Query: 143 PNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKV 202
P N K +F GTG A + L+G + G S+ A K
Sbjct: 15 PGNDKAVF-VPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPV------ 67
Query: 203 SKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 262
++ G E + V L++
Sbjct: 68 ---------------------PVPVDDAGYGGLDVAILEELKAKPNVALIVI-------- 98
Query: 263 PDQSTWNRDPEASYLYYCDNETVDGVEFNYIPDSQGIPLVSDMSSNFLSRKF-----DVS 317
T N S V E I GI L+ D +S +
Sbjct: 99 ----TPN---TTSGGVL-----VPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEG 146
Query: 318 KFGVIIAGAQKNIGPAGITVVIVR 341
V+ KN+G G VVIV+
Sbjct: 147 GADVVTFSLHKNLGGEGGGVVIVK 170
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|130433 TIGR01366, serC_3, phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
FG+GP+K+ E L+ L T S+ SHR A + + L EL ++P+
Sbjct: 7 FGSGPSKVRLEQLQ----ALTT---TAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDG 59
Query: 115 YKILFLQGGGTGMFAAVAMNLI 136
Y+++ GG T + A LI
Sbjct: 60 YEVILGNGGATAFWDAATFGLI 81
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria [Amino acid biosynthesis, Serine family]. Length = 361 |
| >gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 63/347 (18%), Positives = 109/347 (31%), Gaps = 104/347 (29%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP+ +P VL+ + +L HRS ++ + ++ LR + N
Sbjct: 3 LIPGPSNVPPRVLKAMNRPMLG------------HRSPEFLALMDEILEGLRYVFQTENG 50
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD 174
L+S S GTG A NL+ K
Sbjct: 51 ---------------LTF--LLSGS---------------GTGAMEAALSNLLEPGDKVL 78
Query: 175 YVVTGSWSKKAAAEAEKYG-KVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 233
V G + + A AE+YG V++V + VS + + + + NET G
Sbjct: 79 VGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTG 138
Query: 234 SWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNYI 293
+ + + + +A + VD V
Sbjct: 139 VLNP---------------LEGIGALA---------KKHDALLI-------VDAV----- 162
Query: 294 PDSQGIPLVSDMSSNFLSRKFDVSKFGV--IIAGAQKNIG-PAGITVVIVREDLLEYALP 350
S+ F + ++GV G+QK +G P G+ + E LE
Sbjct: 163 -------------SSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKK 209
Query: 351 ITPT-VFHFKINA-----DNNSVY-NTPPTFVVHVIQRVFAWIKRQG 390
T F+F + Y +TPP +++ ++ I +G
Sbjct: 210 KTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEG 256
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356 |
| >gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 47/210 (22%), Positives = 74/210 (35%), Gaps = 60/210 (28%)
Query: 145 NYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSK 204
N+ + LQG GT A +L+ R GK ++ G++ ++ A E G IP
Sbjct: 49 NHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLG-----IPHTDL 103
Query: 205 YVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 264
S P+ + + A A
Sbjct: 104 NFS------EYEPPDLNRI---------------EEALAA-------------------- 122
Query: 265 QSTWNRDPEASYLYYCDNETVDGV-----EFNYIPDSQGIPLVSDMSSNFLSRKFDVSKF 319
DP+ +++ +ET G+ + S G L+ D S+F + D+ +
Sbjct: 123 ------DPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEEL 176
Query: 320 GV--IIAGAQKNI-GPAGITVVIVREDLLE 346
V +IA A K + G G VI R DLLE
Sbjct: 177 DVDALIASANKCLEGVPGFGFVIARRDLLE 206
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level TIGR02326. The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 621 | |||
| KOG2790|consensus | 370 | 100.0 | ||
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 100.0 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 100.0 | |
| PLN02452 | 365 | phosphoserine transaminase | 100.0 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 100.0 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 100.0 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 100.0 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 100.0 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 100.0 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 100.0 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 100.0 | |
| KOG2862|consensus | 385 | 100.0 | ||
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 100.0 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 100.0 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.98 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.98 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.98 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.97 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.97 | |
| PLN02651 | 364 | cysteine desulfurase | 99.97 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.97 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.96 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.96 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.96 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.96 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.95 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.95 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.95 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.95 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.95 | |
| KOG1549|consensus | 428 | 99.94 | ||
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.94 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.93 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.93 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.93 | |
| KOG2790|consensus | 370 | 99.92 | ||
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.86 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.85 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.81 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.8 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.8 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.77 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.74 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.73 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.73 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.69 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.69 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.69 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.66 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.62 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.57 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.57 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.56 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.55 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.52 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.52 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.52 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.51 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.5 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.48 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.48 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.47 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.45 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.44 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.41 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.4 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.39 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.37 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.36 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.35 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.34 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.33 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.33 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.32 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.31 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.3 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.29 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.29 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.29 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.29 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.28 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.27 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.26 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.22 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.22 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.2 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.2 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.19 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.18 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.18 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.18 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.16 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.13 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.13 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.11 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.1 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.08 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.07 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.06 | |
| PLN02721 | 353 | threonine aldolase | 99.06 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.05 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.04 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.03 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.01 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.01 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.01 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.01 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 98.99 | |
| PRK07324 | 373 | transaminase; Validated | 98.98 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 98.97 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 98.95 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.94 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 98.94 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 98.94 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 98.94 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 98.93 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 98.93 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 98.93 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 98.92 | |
| PRK07682 | 378 | hypothetical protein; Validated | 98.91 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 98.91 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 98.91 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 98.9 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 98.9 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 98.89 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 98.88 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 98.86 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 98.86 | |
| PLN02880 | 490 | tyrosine decarboxylase | 98.86 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 98.85 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 98.84 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 98.84 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 98.84 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 98.83 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 98.83 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 98.83 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 98.82 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 98.82 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 98.81 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 98.81 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 98.81 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 98.81 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 98.81 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 98.8 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 98.8 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 98.8 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 98.8 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 98.79 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.79 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 98.76 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 98.75 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 98.75 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 98.75 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 98.75 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 98.74 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 98.74 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 98.73 | |
| PRK07777 | 387 | aminotransferase; Validated | 98.73 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 98.73 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 98.72 | |
| PRK07683 | 387 | aminotransferase A; Validated | 98.72 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 98.72 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 98.72 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 98.7 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.7 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.7 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 98.7 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 98.69 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.69 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 98.68 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 98.68 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 98.68 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 98.67 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 98.66 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 98.65 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 98.64 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 98.63 | |
| PLN02242 | 418 | methionine gamma-lyase | 98.63 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 98.63 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 98.62 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.62 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 98.61 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 98.61 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 98.61 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 98.6 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 98.6 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 98.6 | |
| PLN02187 | 462 | rooty/superroot1 | 98.59 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 98.59 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 98.59 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 98.58 | |
| PLN02656 | 409 | tyrosine transaminase | 98.58 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 98.56 | |
| PLN02509 | 464 | cystathionine beta-lyase | 98.56 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 98.55 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 98.53 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 98.53 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 98.53 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 98.53 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 98.52 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 98.52 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 98.51 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 98.49 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 98.49 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 98.47 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 98.47 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 98.47 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 98.46 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 98.46 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 98.46 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 98.45 | |
| PRK07337 | 388 | aminotransferase; Validated | 98.44 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 98.43 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.42 | |
| PRK09148 | 405 | aminotransferase; Validated | 98.41 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.39 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 98.39 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 98.38 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 98.34 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 98.33 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 98.33 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 98.33 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 98.32 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 98.31 | |
| PLN02263 | 470 | serine decarboxylase | 98.31 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 98.3 | |
| PLN02231 | 534 | alanine transaminase | 98.29 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 98.29 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 98.29 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 98.29 | |
| PRK08068 | 389 | transaminase; Reviewed | 98.28 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 98.28 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.27 | |
| PRK08175 | 395 | aminotransferase; Validated | 98.26 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 98.23 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 98.18 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 98.18 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 98.16 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 98.15 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 98.13 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 98.13 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 98.12 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 98.09 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 98.08 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 98.07 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 98.07 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 98.05 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 98.05 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 98.04 | |
| KOG3846|consensus | 465 | 98.03 | ||
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 98.02 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 97.99 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 97.98 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 97.97 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.97 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 97.97 | |
| KOG0257|consensus | 420 | 97.96 | ||
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 97.93 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 97.91 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 97.91 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 97.87 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 97.87 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 97.86 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 97.85 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 97.82 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 97.77 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 97.74 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 97.74 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 97.73 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 97.73 | |
| PLN02368 | 407 | alanine transaminase | 97.7 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 97.68 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 97.67 | |
| KOG2862|consensus | 385 | 97.66 | ||
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 97.63 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.63 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 97.63 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 97.63 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 97.62 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 97.6 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 97.58 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 97.55 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 97.54 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 97.52 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 97.52 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 97.5 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 97.46 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 97.46 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 97.42 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 97.42 | |
| PRK06855 | 433 | aminotransferase; Validated | 97.41 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 97.39 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 97.39 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 97.34 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 97.33 | |
| PLN00144 | 382 | acetylornithine transaminase | 97.32 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 97.31 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 97.3 | |
| KOG2467|consensus | 477 | 97.3 | ||
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 97.29 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 97.25 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 97.24 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 97.21 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 97.2 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 97.16 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 97.08 | |
| KOG0259|consensus | 447 | 97.06 | ||
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 97.05 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 97.02 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 96.99 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 96.97 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 96.97 | |
| KOG1368|consensus | 384 | 96.93 | ||
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 96.92 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 96.83 | |
| KOG1402|consensus | 427 | 96.77 | ||
| PRK06917 | 447 | hypothetical protein; Provisional | 96.75 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 96.72 | |
| PRK07678 | 451 | aminotransferase; Validated | 96.65 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 96.63 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 96.62 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 96.61 | |
| KOG1404|consensus | 442 | 96.6 | ||
| KOG1360|consensus | 570 | 96.56 | ||
| KOG1383|consensus | 491 | 96.55 | ||
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 96.53 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 96.4 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 96.4 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 96.37 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 96.34 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 96.31 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 96.3 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 96.3 | |
| PLN02651 | 364 | cysteine desulfurase | 96.28 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 96.17 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 96.17 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 96.13 | |
| KOG1359|consensus | 417 | 96.09 | ||
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 95.83 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 95.82 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 95.6 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 95.53 | |
| PRK06105 | 460 | aminotransferase; Provisional | 95.46 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 95.42 | |
| KOG1357|consensus | 519 | 95.41 | ||
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 95.39 | |
| PLN02397 | 423 | aspartate transaminase | 95.31 | |
| KOG0053|consensus | 409 | 95.27 | ||
| PRK06541 | 460 | hypothetical protein; Provisional | 95.19 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 95.15 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 95.15 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 95.12 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 95.12 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 95.07 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 95.07 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 95.05 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 94.95 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 94.95 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 94.84 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 94.82 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 94.7 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 94.65 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 94.37 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 94.31 | |
| PRK07046 | 453 | aminotransferase; Validated | 94.18 | |
| KOG0256|consensus | 471 | 94.17 | ||
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 93.7 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 93.69 | |
| KOG0629|consensus | 510 | 93.59 | ||
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 93.52 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 93.41 | |
| KOG1401|consensus | 433 | 93.25 | ||
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 93.24 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 92.67 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 92.66 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 92.59 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 92.3 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 92.15 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 92.13 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 91.87 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 91.63 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 91.39 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 91.12 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 90.99 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 90.75 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 89.77 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 89.7 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 89.57 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 89.36 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 89.21 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 88.82 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 88.74 | |
| KOG2142|consensus | 728 | 88.22 | ||
| PRK07777 | 387 | aminotransferase; Validated | 88.11 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 87.84 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 87.51 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 87.16 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 87.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 86.91 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 86.34 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 85.25 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 85.12 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 84.93 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 84.85 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 84.06 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 81.51 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 80.95 |
| >KOG2790|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-90 Score=692.57 Aligned_cols=352 Identities=63% Similarity=1.009 Sum_probs=320.1
Q ss_pred cCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc
Q psy8733 46 SSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGT 125 (621)
Q Consensus 46 ~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT 125 (621)
...++++.+|.|||+.+|.+|+.++++.+.||++.|+|++||||||++|..++++++..+|+|+++|++|+|+|+|||||
T Consensus 2 ~~a~~~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt 81 (370)
T KOG2790|consen 2 MDAPERVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGT 81 (370)
T ss_pred CCCccceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCc
Confidence 34447899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhh--CCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccc
Q psy8733 126 GMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI--GRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVS 203 (621)
Q Consensus 126 ~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~--~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~ 203 (621)
+ ||++++.||. ..|+.++|++||.||.++.++|+++|.++.+.+..+
T Consensus 82 ~-------------------------------qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k 130 (370)
T KOG2790|consen 82 G-------------------------------QFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLK 130 (370)
T ss_pred c-------------------------------cccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEecccc
Confidence 9 8888999988 466789999999999999999999998766554210
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNE 283 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnE 283 (621)
+-.|+.+|+.+.|..++|.+||++|.||
T Consensus 131 ----------------------------------------------------~y~ygkvPd~~~w~~~~da~yvyyCaNE 158 (370)
T KOG2790|consen 131 ----------------------------------------------------SYTYGKVPDPSTWELNPDASYVYYCANE 158 (370)
T ss_pred ----------------------------------------------------ccccCcCCChhhcccCCCccEEEEecCc
Confidence 1126689999999999999999999999
Q ss_pred ccccccccccc--ccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecccc
Q psy8733 284 TVDGVEFNYIP--DSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKIN 361 (621)
Q Consensus 284 T~tGv~~p~i~--~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~ 361 (621)
|++|++++.+| ..+|+++|+|++|.|.++|+|+++
T Consensus 159 TVHGVEf~~~P~~~~~~~vlVaDmSSnflSrpvDvsk------------------------------------------- 195 (370)
T KOG2790|consen 159 TVHGVEFDFIPVNDPKGAVLVADMSSNFLSRPVDVSK------------------------------------------- 195 (370)
T ss_pred eeeceecCCCCCCCCCCceEEEecccchhcCCccchh-------------------------------------------
Confidence 99999999877 678999999999999999988754
Q ss_pred ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccc
Q psy8733 362 ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHV 441 (621)
Q Consensus 362 ~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~ 441 (621)
T Consensus 196 -------------------------------------------------------------------------------- 195 (370)
T KOG2790|consen 196 -------------------------------------------------------------------------------- 195 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCC
Q psy8733 442 QTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG 521 (621)
Q Consensus 442 ~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg 521 (621)
|++||||+|||+||||+|++|||+|+|+++.+++|++++|+.+++|||+|||||||+||++|+||+||+++||
T Consensus 196 -------~gvi~aGAQKN~G~aG~Tvvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GG 268 (370)
T KOG2790|consen 196 -------FGVIFAGAQKNVGPAGVTVVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGG 268 (370)
T ss_pred -------cceEEeccccccCccccEEEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhccc
Confidence 4455666677777777777777777777777778999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCcccccCCC-------------CCcccHHHHHHHHHccCccccCCCCCCccceeecc
Q psy8733 522 LAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA-------------GFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYN 588 (621)
Q Consensus 522 ~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~-------------~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~ 588 (621)
+++||+.|++||++||+.||+|.+||+|||++ .++++++|+++|.+++|+.+|||||+||||+|+||
T Consensus 269 l~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d~Le~eFLkeA~~~~mv~LKGhRSVGGiRASlYN 348 (370)
T KOG2790|consen 269 LAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKDELEAEFLKEAAKEHMVQLKGHRSVGGIRASLYN 348 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecchHHHHHHHHHHHHhhhhccccccccccchhhhhc
Confidence 99999999999999999999999999999999 24599999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC
Q psy8733 589 AITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 589 a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
|++.|++++|++||++|.++|.
T Consensus 349 Aisv~~~q~L~~~m~~F~k~h~ 370 (370)
T KOG2790|consen 349 AISVEEVQKLAAFMKEFQKKHA 370 (370)
T ss_pred cccHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999984
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-81 Score=665.21 Aligned_cols=359 Identities=38% Similarity=0.695 Sum_probs=329.7
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
..|||+|||+.+|++|++++++.+.+|++.|+|++|++|||++|.++++++++.|++||++|++|+|+|++||||+
T Consensus 4 ~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~---- 79 (364)
T PRK12462 4 NQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSL---- 79 (364)
T ss_pred ccceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHH----
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEE-EEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD-YVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~-~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
||||+++||+.+|++++ |+++|.||+||.++|+++|.++++...
T Consensus 80 ---------------------------~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g~v~~~~~~-------- 124 (364)
T PRK12462 80 ---------------------------QFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVAAMRVVWDG-------- 124 (364)
T ss_pred ---------------------------HHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcCCceEecCc--------
Confidence 89999999998888655 999999999999999999854333210
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
| ..+++.+|+.+.|++++++++|++|||||++|++
T Consensus 125 -------------------------~--------------------~~~~~~~p~~~~~~~~~d~~~v~~t~NETstGv~ 159 (364)
T PRK12462 125 -------------------------A--------------------ASGYRTLPSLAELDWDARAPFRHYVSNETVEGLQ 159 (364)
T ss_pred -------------------------C--------------------CCCCCcCCCHHHhccCCCCcEEEEccCCCCceEe
Confidence 0 1224567777778888899999999999999999
Q ss_pred cccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccC
Q psy8733 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYN 369 (621)
Q Consensus 290 ~p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~ 369 (621)
+|.+++.+++++||||+|++|++|+|+++||++++|+||||||||++++++|++++++..+..|.|+||..+.++++++|
T Consensus 160 ~~~~~~~~~~llvvD~sS~~~s~pid~~~~dvi~agsQKnlgP~Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~n 239 (364)
T PRK12462 160 FPDAAGLPDSPLIADMSSDFMSRPFDVEAYGMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYN 239 (364)
T ss_pred cCcccccCCCeEEEEcCchhhCCCCChHHccEEEeeccccCCCCceEEEEECHHHHhhccccCCchhhHHHHHhcCCCCC
Confidence 98777767899999999999999999999999999999999999999999999999998777889999999888889999
Q ss_pred CchHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhh
Q psy8733 370 TPPTFVVHVIQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFF 448 (621)
Q Consensus 370 TP~v~~I~aL~~aL~~i~~~-gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~ 448 (621)
|||++.||+++++|+||+++ ||++++++|++++++.||+.|++++|||.++++++.||+||||
T Consensus 240 TPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~---------------- 303 (364)
T PRK12462 240 TPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVA---------------- 303 (364)
T ss_pred CchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEE----------------
Confidence 99999999999999999998 8999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
++. .
T Consensus 304 ---------------------------------------f~~-~------------------------------------ 307 (364)
T PRK12462 304 ---------------------------------------FRF-R------------------------------------ 307 (364)
T ss_pred ---------------------------------------EEc-C------------------------------------
Confidence 332 1
Q ss_pred HHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
+.+++++|+++|+++||+.+||||++||||+|+|||+|.|++++|++||++|+++
T Consensus 308 -------------------------~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 308 -------------------------QPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred -------------------------CHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 0248899999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy8733 609 HS 610 (621)
Q Consensus 609 ~~ 610 (621)
|.
T Consensus 363 ~~ 364 (364)
T PRK12462 363 HA 364 (364)
T ss_pred cC
Confidence 84
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-80 Score=641.97 Aligned_cols=347 Identities=49% Similarity=0.790 Sum_probs=301.2
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+++|+|++||+.+|++|++++++.+.+|++.|+||||+||||++|.++++++++.+|+||++|++|+|+|+|||+|+
T Consensus 4 ~~~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~--- 80 (365)
T COG1932 4 PRVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATG--- 80 (365)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHH---
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
||+|+++||+..+ ...|+.+|+|++.+.++|++++....+....
T Consensus 81 ----------------------------qf~~~p~nLl~~~-~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~------- 124 (365)
T COG1932 81 ----------------------------QFAMAPMNLLGKR-GTDYVDTGAWSEFAIKEAKKVGKQPKLIDAR------- 124 (365)
T ss_pred ----------------------------HHHHHHHhhhccc-CceeEeeeehhHhHHHHHHHhcccccccccc-------
Confidence 9999999999642 2239999999999999999998531111100
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
....+|+.+|+.+.|.++++..|||+|+|||++|+.
T Consensus 125 --------------------------------------------~~~~~~~~iP~~~~~~~~~~~ayv~~~~NeTi~Gv~ 160 (365)
T COG1932 125 --------------------------------------------IEEAGYGSIPDLSKWDFSDNDAYVHFCWNETISGVE 160 (365)
T ss_pred --------------------------------------------eeccCccCCCChhhcccCCCccEEEEecCCcccceE
Confidence 002458899999999888888999999999999999
Q ss_pred ccccccc-CCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCcc
Q psy8733 290 FNYIPDS-QGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVY 368 (621)
Q Consensus 290 ~p~i~~~-~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~ 368 (621)
.|..+.. .+.++|+|++|+++++|||++++|
T Consensus 161 v~~~p~~~~~~~~v~D~SS~ilsr~iDvsk~d------------------------------------------------ 192 (365)
T COG1932 161 VPELPDIGSDGLLVADASSAILSRPIDVSKYD------------------------------------------------ 192 (365)
T ss_pred ccCCCCCCCCceEEEecccHHhcCCCChhHcc------------------------------------------------
Confidence 9975542 238999999999999988876544
Q ss_pred CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhh
Q psy8733 369 NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFF 448 (621)
Q Consensus 369 ~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~ 448 (621)
T Consensus 193 -------------------------------------------------------------------------------- 192 (365)
T COG1932 193 -------------------------------------------------------------------------------- 192 (365)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCC-CCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~-~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
+||||+|||+||+|+|++||||++|+++... +|++++|++++.|+|||||||||+||++++||+|++++||+++|++
T Consensus 193 --viyagaQKnlGpaGltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~ 270 (365)
T COG1932 193 --VIYAGAQKNLGPAGLTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEA 270 (365)
T ss_pred --eEEEehhhccCccceEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555555555555555555555444 6788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcccccCCCC-------------CcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHH
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYECPVQAG-------------FPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDE 594 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~~~v~~~-------------~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~ 594 (621)
||++||++||++||+| +||+++|+++ .++++.|+++|+++|++.++|||++|++|+++|||++.|+
T Consensus 271 rn~~ka~~LY~~id~s-~fy~~~v~~~~RS~mnV~f~~~~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~ 349 (365)
T COG1932 271 RNQAKAQLLYDWIDKS-DFYRNLVAKANRSRMNVTFTLVDAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLED 349 (365)
T ss_pred HHHHHHHHHHHHHHhC-CccccccchhhccceeEEEEcCcHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHH
Confidence 9999999999999999 6999999882 2488999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q psy8733 595 AVILVKFMKEFRHKHS 610 (621)
Q Consensus 595 ~~~l~~~~~~~~~~~~ 610 (621)
+++|++||++|.++|+
T Consensus 350 veaL~~fm~~f~~~~~ 365 (365)
T COG1932 350 VEALTDFMDWFEETYK 365 (365)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999874
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-74 Score=617.07 Aligned_cols=360 Identities=52% Similarity=0.873 Sum_probs=323.3
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+++|||+|||+.+|++|++++++++.+|++.|+|++|++||+++|.+++++++++|++|+++|++|+|+|+|||||+
T Consensus 6 ~~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~--- 82 (365)
T PLN02452 6 GRVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGAST--- 82 (365)
T ss_pred CceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHH---
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
||||+++||+.+|++++|+++|.||+||.++|+++|.++++...
T Consensus 83 ----------------------------~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~-------- 126 (365)
T PLN02452 83 ----------------------------QFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASG-------- 126 (365)
T ss_pred ----------------------------HHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEec--------
Confidence 88899999999999999999999999999999999975544321
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
+| .++..+|+.++++.++++++|++|||||++|++
T Consensus 127 ------------------------~~---------------------~~~~~~~~~~~~~~~~~~~~v~~~hnETstGv~ 161 (365)
T PLN02452 127 ------------------------KD---------------------EKYTKIPSVSEWELTPDAKFVHICANETIHGVE 161 (365)
T ss_pred ------------------------CC---------------------CCCCCCCChHHcCCCCCCcEEEECCCCCCCcEe
Confidence 01 123345666667778899999999999999997
Q ss_pred cccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccC
Q psy8733 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYN 369 (621)
Q Consensus 290 ~p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~ 369 (621)
.+.+++..++++||||+|++|++|||+++||++++|+|||+||+|+|++++|+++++++.+..|.|++|..+.++.++++
T Consensus 162 ~~~~~~i~~~~lvVDa~Ss~g~~pidv~~~~v~~~saqK~lGP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~ 241 (365)
T PLN02452 162 FKDYPDVGNVPLVADMSSNFLSKPVDVSKYGVIYAGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYN 241 (365)
T ss_pred cCcccccCCCeEEEECCccccCcccCHHHcCEEEEecccccCCCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccC
Confidence 33345444589999999999999999999999999999999999999999999999998777788999998778889999
Q ss_pred CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhhH
Q psy8733 370 TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFF 449 (621)
Q Consensus 370 TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~~ 449 (621)
|||+++||+++++|+||.++||++++++|+++++++||++|++++|||..+.+++.||+|||+
T Consensus 242 TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vs----------------- 304 (365)
T PLN02452 242 TPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVP----------------- 304 (365)
T ss_pred ChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEE-----------------
Confidence 999999999999999999988999999999999999999999998897777777789999987
Q ss_pred HHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHH
Q psy8733 450 GVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 529 (621)
Q Consensus 450 ~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~ 529 (621)
+.. .
T Consensus 305 --------------------------------------F~~-~------------------------------------- 308 (365)
T PLN02452 305 --------------------------------------FTL-G------------------------------------- 308 (365)
T ss_pred --------------------------------------EEc-C-------------------------------------
Confidence 211 0
Q ss_pred HHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 530 LQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 530 ~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
+.+++++|+++|+++||+.++|||++|+||||+|||++.|++++|++||++|+++|
T Consensus 309 ------------------------~~~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~~~ 364 (365)
T PLN02452 309 ------------------------GSELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 364 (365)
T ss_pred ------------------------CchhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHHhc
Confidence 02367889999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy8733 610 S 610 (621)
Q Consensus 610 ~ 610 (621)
.
T Consensus 365 ~ 365 (365)
T PLN02452 365 A 365 (365)
T ss_pred C
Confidence 4
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=493.81 Aligned_cols=358 Identities=55% Similarity=0.908 Sum_probs=303.0
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
+.++|+|||+++|++|+++|..++.+|.+.|+|.++++||+++|.++++++|++|+++||+|++|+|+|++|+||+
T Consensus 3 ~~~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~---- 78 (360)
T PRK05355 3 RVYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASL---- 78 (360)
T ss_pred ceeeccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchH----
Confidence 4689999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
+||+++.|++.+|++++++++|.||+||.++|+++|.+.++ ..
T Consensus 79 ---------------------------~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~~~~-~~--------- 121 (360)
T PRK05355 79 ---------------------------QFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEVNVA-AS--------- 121 (360)
T ss_pred ---------------------------HHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCceEE-ec---------
Confidence 66678899999999999999999999999999999965222 10
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
...|+.. ..++.+++.+++++++|++|||||+||+++
T Consensus 122 ---------------------~~~~g~~----------------------~~~~~~~~~l~~~~~~V~~th~eTstGv~~ 158 (360)
T PRK05355 122 ---------------------SEDDGFT----------------------YIPPLDEWQLSDDAAYVHYTSNETIDGTEF 158 (360)
T ss_pred ---------------------ccccCCC----------------------CCCChhhccCCCCCCEEEEccCCCcceEec
Confidence 0002221 122233335667899999999999999999
Q ss_pred ccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCC
Q psy8733 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNT 370 (621)
Q Consensus 291 p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~T 370 (621)
|-+++-+|++++|||+|++|+.|+|+++||++++|+||++||+|+|++++|+++++++.+..+.|+++....+...+++|
T Consensus 159 ~~i~~i~g~l~vVDavss~g~~~idv~~~d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~T 238 (360)
T PRK05355 159 HELPDTGDVPLVADMSSDILSRPIDVSKFGLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNT 238 (360)
T ss_pred CcccccCCCcEEEEcCccccCccCCHHHccEEEEeccccccCCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCC
Confidence 43443389999999999999999999999999999999999999999999999999987645668887765556678899
Q ss_pred chHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhhHH
Q psy8733 371 PPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFFG 450 (621)
Q Consensus 371 P~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~~~ 450 (621)
||+.++++|+++|+|+.++||++++++|+++++++++++|++++ ++....++..||+++++
T Consensus 239 p~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~-~~~~~~~~~~rs~~v~s------------------ 299 (360)
T PRK05355 239 PPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSD-FYRNPVAPEDRSRMNVP------------------ 299 (360)
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC-CcccCCChhhcCCcEEE------------------
Confidence 99999999999999999997899999999999999999999997 55433344568876554
Q ss_pred HHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHH
Q psy8733 451 VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSL 530 (621)
Q Consensus 451 ~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~ 530 (621)
+.. |+
T Consensus 300 -------------------------------------f~~----------~~---------------------------- 304 (360)
T PRK05355 300 -------------------------------------FTL----------AD---------------------------- 304 (360)
T ss_pred -------------------------------------EEc----------CC----------------------------
Confidence 111 00
Q ss_pred HHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 531 QKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 531 ~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
...+.+|++.+.++||+...||+..|.||+|+++..|.||+++|+++|+++..+|+
T Consensus 305 ------------------------~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~~~ 360 (360)
T PRK05355 305 ------------------------EELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERRHG 360 (360)
T ss_pred ------------------------hHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 01224577788899999988887789999999999999999999999999999874
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=478.36 Aligned_cols=349 Identities=55% Similarity=0.925 Sum_probs=300.5
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhc
Q psy8733 60 AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSS 139 (621)
Q Consensus 60 s~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~ 139 (621)
+++|++|++++.+++.+|.+.|+|.++++||+++|.++++++|++|+++|++|++|+|+|++||||+
T Consensus 1 ~~~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~------------- 67 (349)
T TIGR01364 1 AALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATG------------- 67 (349)
T ss_pred CCCCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchH-------------
Confidence 5799999999999999999999999999999999999999999999999999888899999999999
Q ss_pred cCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCC
Q psy8733 140 MNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPE 219 (621)
Q Consensus 140 ~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (621)
+||+++.|++.+|++++++++|.||+||.++|+++|.+.++...
T Consensus 68 ------------------a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~~~~~~~~------------------ 111 (349)
T TIGR01364 68 ------------------QFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKYGVVNVVASG------------------ 111 (349)
T ss_pred ------------------HHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCcEEEecc------------------
Confidence 55567888888899999999999999999999999983322100
Q ss_pred ccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccccccccccCCC
Q psy8733 220 ASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNYIPDSQGI 299 (621)
Q Consensus 220 v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~i~~~~g~ 299 (621)
-.++|++.+++++ +.+++++++|++|||||+||+++|.+++.+++
T Consensus 112 -----------~~~~~~~~~~~~~------------------------~~~~~~~~~v~~th~ETstGv~~~~l~~~~~~ 156 (349)
T TIGR01364 112 -----------KEGNYTKIPDPST------------------------WEISEDAAYVHYCANETIHGVEFRELPDVKNA 156 (349)
T ss_pred -----------ccCCCCCCCCHHh------------------------cCCCCCCCEEEEcCCCCcccEecceecccCCC
Confidence 0245666655433 23456899999999999999999988877899
Q ss_pred cEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHH
Q psy8733 300 PLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVI 379 (621)
Q Consensus 300 llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL 379 (621)
+++|||+|++|+.|+|+++||++++|+||++||+|+|++++|+++++++.+..|.+++|....++...++|||+.+|++|
T Consensus 157 l~iVDavss~g~~~id~~~~d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al 236 (349)
T TIGR01364 157 PLVADMSSNILSRPIDVSKFGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVS 236 (349)
T ss_pred eEEEEccccccCccCCHHHccEEEEecccccCCCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777777777544445677899999999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhhHHHHHhhcccc
Q psy8733 380 QRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFFGVIIAGAQKN 459 (621)
Q Consensus 380 ~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~~~~~~a~~qk~ 459 (621)
.+||+|+.++||++++++|+++++++++++|++++|++....+++.||+++++
T Consensus 237 ~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~s--------------------------- 289 (349)
T TIGR01364 237 GLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVV--------------------------- 289 (349)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEE---------------------------
Confidence 99999999997899999999999999999999998877665455568876543
Q ss_pred cccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q psy8733 460 IGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 539 (621)
Q Consensus 460 ~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~ 539 (621)
+.. |+
T Consensus 290 ----------------------------f~~----------~~------------------------------------- 294 (349)
T TIGR01364 290 ----------------------------FTL----------GN------------------------------------- 294 (349)
T ss_pred ----------------------------Eec----------CC-------------------------------------
Confidence 111 00
Q ss_pred HhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 540 IDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 540 id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
..++.+|++.+.++||....||+..|+||+|+++..+.||++.|+++|+++.++|
T Consensus 295 ---------------~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~~ 349 (349)
T TIGR01364 295 ---------------EELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKKH 349 (349)
T ss_pred ---------------hhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHhC
Confidence 0123567788899999999999888999999999999999999999999999987
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=467.23 Aligned_cols=354 Identities=58% Similarity=0.989 Sum_probs=296.4
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
++|+|||+++|++|+++|.+++.++.+.|++.++.+||+++|.++++++|+++++|||++++++|+|++||||+
T Consensus 1 ~~~~pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~------ 74 (355)
T cd00611 1 INFSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATG------ 74 (355)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchH------
Confidence 57999999999999999999998888899999999999999999999999999999999888899999999999
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
++++++.||+.++++.+++++|.|+++|.++++++|....+++..
T Consensus 75 -------------------------a~~~~~~~l~~~~~~~~~i~~g~~~~~~~~~a~~~g~~~~~~~~~---------- 119 (355)
T cd00611 75 -------------------------QFAAVPLNLLGDKGTADYVVTGAWSAKAAKEAKRYGGVVVIVAAK---------- 119 (355)
T ss_pred -------------------------HHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHhcCCCcEEEecc----------
Confidence 344466777766788999999999999999999999643332210
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
-.+.|+ .+++.....+++++++|+++|+||+||+.++.
T Consensus 120 ------------------~~g~~~------------------------~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~~ 157 (355)
T cd00611 120 ------------------EEGKYT------------------------KIPDVETWDLAPDAAYVHYCSNETIHGVEFDE 157 (355)
T ss_pred ------------------cccCCC------------------------CCCCHhhcCCCCCCCEEEEeCCcccccEEcce
Confidence 001121 22222233467899999999999999999887
Q ss_pred ccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCch
Q psy8733 293 IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPP 372 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~ 372 (621)
+++.+|++++|||+|++|+.|+|++++|++++|+||++||+|+|++++|+++++++.+..|.++++....+....++|||
T Consensus 158 i~~~~g~~~~VDa~qs~g~~~idv~~~~~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn 237 (355)
T cd00611 158 VPDTGGVPLVADMSSNILSRPIDVSKFGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPP 237 (355)
T ss_pred ecccCCCeEEEEccccccCCCCCHHHhCEEEeecccccCCCceEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCCh
Confidence 88789999999999999999999999999889999999999999999999999998877777766654444555689999
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhhHHHH
Q psy8733 373 TFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFFGVI 452 (621)
Q Consensus 373 v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~~~~~ 452 (621)
+.+|++|.+||+|+.++||++++++|+++++++++++|++++|++..+.++..||+.+++
T Consensus 238 ~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvs-------------------- 297 (355)
T cd00611 238 TFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVP-------------------- 297 (355)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEE--------------------
Confidence 999999999999999997899999999999999999999998776455455568765443
Q ss_pred HhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8733 453 IAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQK 532 (621)
Q Consensus 453 ~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~k 532 (621)
+.. ++
T Consensus 298 -----------------------------------f~~--~~-------------------------------------- 302 (355)
T cd00611 298 -----------------------------------FRL--GK-------------------------------------- 302 (355)
T ss_pred -----------------------------------EEc--CC--------------------------------------
Confidence 111 00
Q ss_pred HHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHH
Q psy8733 533 SVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 533 a~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
..++.++++.+.++|++...||+..|++|+|+++..|.||+++|+++|++++
T Consensus 303 ----------------------~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 303 ----------------------EELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred ----------------------hhhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 0123567778889999999999988999999999999999999999999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-51 Score=435.71 Aligned_cols=345 Identities=22% Similarity=0.312 Sum_probs=297.0
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
.++++|||+++|++|+++|.+.+ .+|||++|.+++.+++++|+++|++++ +++++++|+||.+
T Consensus 6 ~~Ll~PGP~~v~~~V~~am~~~~------------~~h~s~~F~~~~~~~~~~L~~v~~t~~-~~~~ll~gsGt~a---- 68 (383)
T COG0075 6 RLLLTPGPVPVPPRVLLAMARPM------------VGHRSPDFVGIMKEVLEKLRKVFGTEN-GDVVLLSGSGTLA---- 68 (383)
T ss_pred ceeeeCCCCCCCHHHHHHhcCCC------------CCCCCHHHHHHHHHHHHHHHHHhcCCC-CcEEEEcCCcHHH----
Confidence 58999999999999999999987 789999999999999999999999984 4789999999994
Q ss_pred HHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCC
Q psy8733 132 AMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQ 211 (621)
Q Consensus 132 alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~ 211 (621)
+|+++.|+++||||++++.+|.||+||.++|+++|...
T Consensus 69 ---------------------------mEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v--------------- 106 (383)
T COG0075 69 ---------------------------MEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEV--------------- 106 (383)
T ss_pred ---------------------------HHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCce---------------
Confidence 55578899999999999999999999999999999742
Q ss_pred CCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccccc
Q psy8733 212 STWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291 (621)
Q Consensus 212 ~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p 291 (621)
++++.+|+.++++|++ .+.+..+++.++|+++||||+||+++|
T Consensus 107 -----------------~~~~~~wg~~v~p~~v--------------------~~~L~~~~~~~~V~~vH~ETSTGvlnp 149 (383)
T COG0075 107 -----------------VVLEVEWGEAVDPEEV--------------------EEALDKDPDIKAVAVVHNETSTGVLNP 149 (383)
T ss_pred -----------------EEEeCCCCCCCCHHHH--------------------HHHHhcCCCccEEEEEeccCcccccCc
Confidence 3467789999999986 234456788999999999999999999
Q ss_pred c--c---cccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCC-CC-ceeecccc
Q psy8733 292 Y--I---PDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPI-TP-TVFHFKIN 361 (621)
Q Consensus 292 ~--i---~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~-~P-~~ld~~~~ 361 (621)
+ | ++++|+++|||++||+|+.|+++++|| ++++|+||||+ |||+|++.+|+++++++... .| .|+|+..+
T Consensus 150 l~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~ 229 (383)
T COG0075 150 LKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKW 229 (383)
T ss_pred HHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHH
Confidence 7 4 468999999999999999999999998 99999999996 99999999999999998764 34 58887653
Q ss_pred ---cc-CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccc
Q psy8733 362 ---AD-NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFT 437 (621)
Q Consensus 362 ---~~-~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t 437 (621)
.+ ++.+++|||+..+|+|.+||+.++++ |++++++||+++++++++++.++| |.++. +++.+||++ |
T Consensus 230 ~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~E-Gle~r~~RH~~~~~a~r~~~~alG-l~~~~-~~~~~s~tv------t 300 (383)
T COG0075 230 LKYMEKKGSTPYTPPVNLIYALREALDLILEE-GLEARIARHRRLAEALRAGLEALG-LELFA-DPERRSPTV------T 300 (383)
T ss_pred HHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHcC-Ccccc-CcccCCCce------E
Confidence 22 36888999999999999999999999 799999999999999999999996 88887 888999874 5
Q ss_pred cccccCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHH
Q psy8733 438 FSHVQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK 517 (621)
Q Consensus 438 ~~~~~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~ 517 (621)
++++|++...+
T Consensus 301 a~~~P~g~~~~--------------------------------------------------------------------- 311 (383)
T COG0075 301 AIKVPEGVDDK--------------------------------------------------------------------- 311 (383)
T ss_pred EEECCCCCCcH---------------------------------------------------------------------
Confidence 55555542211
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCc--cceeeccCCCHHHH
Q psy8733 518 RQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGG--IRASIYNAITVDEA 595 (621)
Q Consensus 518 ~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~--~r~~~~~a~~~~~~ 595 (621)
+.+....++.|+....|++...+ |||+..=-.+.+++
T Consensus 312 -----------------------------------------~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv 350 (383)
T COG0075 312 -----------------------------------------KVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDV 350 (383)
T ss_pred -----------------------------------------HHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHH
Confidence 11223445559999999999553 99999999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q psy8733 596 VILVKFMKEFRHKHSR 611 (621)
Q Consensus 596 ~~l~~~~~~~~~~~~~ 611 (621)
..++..|..-..+.+.
T Consensus 351 ~~~l~ale~~L~~~g~ 366 (383)
T COG0075 351 LAALAALEAALRELGV 366 (383)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999988877654
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=438.28 Aligned_cols=348 Identities=17% Similarity=0.194 Sum_probs=276.9
Q ss_pred eeccCCCCCCCHHH-HHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 53 INFGAGPAKLPREV-LEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 53 ~lf~aGPs~~P~~V-lea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
-.|+|||+.+.+.+ .+++.+ ++++++|||++|.+++++++++|+++|++|++|+|+|++||||+
T Consensus 5 ~~f~~gp~~~~~~~~~~~~~~----------~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~----- 69 (374)
T TIGR01365 5 PCFSSGPCAKRPGWSIEELKN----------APLGRSHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTG----- 69 (374)
T ss_pred CCcCCCccCCCchhhHHHHhh----------hhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHH-----
Confidence 47999999999995 555554 35679999999999999999999999999888999999999999
Q ss_pred HHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhC-CCCcEEEEEcChHHHHHH-HHHHHhCCceeeecccccccccC
Q psy8733 132 AMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIG-RTGKADYVVTGSWSKKAA-AEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 132 alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~-~g~~~~~v~tG~~~~~~~-~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+|||++.||++ +|++++ ++|.||+||. +.|+++|...
T Consensus 70 --------------------------a~Eaa~~nl~~~~g~~vL--v~g~FG~r~~~eia~~~g~~~------------- 108 (374)
T TIGR01365 70 --------------------------AVEMALWSMLGCRGVDVL--AWESFGKGWVTDVTKQLKLPD------------- 108 (374)
T ss_pred --------------------------HHHHHHHHcCCCCCCeEE--EECHHHHHHHHHHHHhcCCCC-------------
Confidence 66678889884 565554 5789999999 9999998621
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
++.++.+|++.++++.+ ... +.|++|||||+||++
T Consensus 109 ------------------v~~l~~~~g~~~~~~~v------------------------e~~---~~v~~vhnETSTGv~ 143 (374)
T TIGR01365 109 ------------------VRVLEAEYGKLPDLKKV------------------------DFK---NDVVFTWNGTTSGVR 143 (374)
T ss_pred ------------------cEEEcCCCCCCCCHHHc------------------------CCC---CCEEEecCCCchhee
Confidence 22356789988876663 111 227899999999999
Q ss_pred ccc--ccc-cCCCcEEEecccccCCCcccccccceEEeccccccC-CCccEEEEEchhHHhhhCCC-----CCceeeccc
Q psy8733 290 FNY--IPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI-----TPTVFHFKI 360 (621)
Q Consensus 290 ~p~--i~~-~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~-----~P~~ld~~~ 360 (621)
+|+ +.+ .++++++|||+||+|+.|+|++++|++++|+||||| |||++++++|++++++.... .|.|+++..
T Consensus 144 npv~~i~~~~~~~lliVDavSs~g~~~l~~d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~ 223 (374)
T TIGR01365 144 VPNGDFIPADREGLTICDATSAAFAQDLDYHKLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTK 223 (374)
T ss_pred ccccccccccCCCcEEEEccchhcCCCCChhHCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhcccc
Confidence 997 333 368999999999999999999999999999999997 99999999999999987642 234555433
Q ss_pred c------ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCccccc
Q psy8733 361 N------ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDI 434 (621)
Q Consensus 361 ~------~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~ 434 (621)
. ..++++++||+++.++++.++|+|++++||++++++|++++++++|+++++++.++.++.+++.||+++++
T Consensus 224 ~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~-- 301 (374)
T TIGR01365 224 GGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVC-- 301 (374)
T ss_pred ccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEE--
Confidence 1 12467899999999999999999999988999999999999999999999997577676557789998775
Q ss_pred ccccccccCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHH
Q psy8733 435 FFTFSHVQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA 514 (621)
Q Consensus 435 ~~t~~~~~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~ 514 (621)
+.+|++
T Consensus 302 ----v~~~~~---------------------------------------------------------------------- 307 (374)
T TIGR01365 302 ----LKVVDP---------------------------------------------------------------------- 307 (374)
T ss_pred ----EEeCCc----------------------------------------------------------------------
Confidence 111100
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCC-C-CccceeeccCCCH
Q psy8733 515 WIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRL-V-GGIRASIYNAITV 592 (621)
Q Consensus 515 ~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~-~-~~~r~~~~~a~~~ 592 (621)
++.+ +|. +++.+....|.+.++++||+...|++. . ..|||+++++++.
T Consensus 308 ------~~~~---------------~~~---------~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~ 357 (374)
T TIGR01365 308 ------AIDA---------------LDE---------DAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEK 357 (374)
T ss_pred ------cccc---------------ccc---------chhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCH
Confidence 0000 000 000123467888999999988877765 3 5699999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy8733 593 DEAVILVKFMKEFRH 607 (621)
Q Consensus 593 ~~~~~l~~~~~~~~~ 607 (621)
++++.|+++|+...+
T Consensus 358 ~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 358 SDLECLCPWLDWAFA 372 (374)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999997654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=399.89 Aligned_cols=342 Identities=23% Similarity=0.314 Sum_probs=270.2
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
--|+|||+++|++|+++|... +.++.+++||+++|.++++++|+++++|++++++++|+|++||||.
T Consensus 5 ~~f~pGP~~~~~~v~~a~~~~-------~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~------ 71 (361)
T TIGR01366 5 GRFGSGPSKVRLEQLQALTTT-------AASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATA------ 71 (361)
T ss_pred CcccCCCcCCCHHHHHHHHhc-------CccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhH------
Confidence 469999999999999998754 3455668999999999999999999999999888899999999999
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
+|++++.|++. ++.+++.+|.|+++|.+.+++.....
T Consensus 72 -------------------------a~~~~~~~l~~--~~~l~i~~G~~~~~~~~~a~~~~~~~---------------- 108 (361)
T TIGR01366 72 -------------------------FWDAATFGLIE--KKSLHLSFGEFSSKFAKAVKLAPWLG---------------- 108 (361)
T ss_pred -------------------------HHHHHHHhccc--ccccEEecCHHHHHHHHHHHhhhccC----------------
Confidence 44456677764 46788999999999999998742100
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
+ ++.+..+|++.++ ..+++++++|++||+||++|+++|+
T Consensus 109 ------~--------~~~~~~~~~~~~~---------------------------~~~~~~~~lV~~~h~et~tG~~~pi 147 (361)
T TIGR01366 109 ------E--------PIIVTADPGSAPE---------------------------PQADPGVDVIAWAHNETSTGVAVPV 147 (361)
T ss_pred ------C--------ceEEecCCCCCCC---------------------------CccCCCCCEEEEcccCCccceeccc
Confidence 0 1112333443211 1246789999999999999999997
Q ss_pred --ccccCCCcEEEecccccCCCcccccccceEEeccccccC-CCccEEEEEchhHHhhhCCC------CCceeecccccc
Q psy8733 293 --IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI------TPTVFHFKINAD 363 (621)
Q Consensus 293 --i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~------~P~~ld~~~~~~ 363 (621)
|++++|++++|||+|++|+.|+|++++|++++|+|||+| |+|++++++|+++++++.+. .|.|+|+....+
T Consensus 148 ~~I~~~~g~~~iVDavqs~g~~~idv~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~ 227 (361)
T TIGR01366 148 RRPEGSDDALVVIDATSGAGGLPVDIAETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVD 227 (361)
T ss_pred ccccccCCCeEEEEcCccccCCCCCHHHCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHh
Confidence 777889999999999999999999999999999999998 77999999999999887753 245666654322
Q ss_pred ---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCccccccccccc
Q psy8733 364 ---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSH 440 (621)
Q Consensus 364 ---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~ 440 (621)
.+.++|||++..++++.++++|+.++||++++++|++++++++++++++++++......+..||+++.+
T Consensus 228 ~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~-------- 299 (361)
T TIGR01366 228 NSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGT-------- 299 (361)
T ss_pred ccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEE--------
Confidence 357889999999999999999999997899999999999999999999998554443334445654322
Q ss_pred ccCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcC
Q psy8733 441 VQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQG 520 (621)
Q Consensus 441 ~~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~g 520 (621)
+.+
T Consensus 300 ---------------------------------------------v~~-------------------------------- 302 (361)
T TIGR01366 300 ---------------------------------------------IDF-------------------------------- 302 (361)
T ss_pred ---------------------------------------------EEC--------------------------------
Confidence 000
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCC--CccceeeccCCCHHHHHHH
Q psy8733 521 GLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLV--GGIRASIYNAITVDEAVIL 598 (621)
Q Consensus 521 g~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~--~~~r~~~~~a~~~~~~~~l 598 (621)
+ + .--.+.|.+.++++||+...||+.. +.+|||+++..|.+|+++|
T Consensus 303 -----------------------------~-~--g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l 350 (361)
T TIGR01366 303 -----------------------------V-D--DIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEAL 350 (361)
T ss_pred -----------------------------C-C--ccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHH
Confidence 0 0 0012346677788899988888774 3499999999999999999
Q ss_pred HHHHHHHHHH
Q psy8733 599 VKFMKEFRHK 608 (621)
Q Consensus 599 ~~~~~~~~~~ 608 (621)
++.|++..++
T Consensus 351 ~~al~~~~~~ 360 (361)
T TIGR01366 351 TECVDWVVER 360 (361)
T ss_pred HHHHHHHHhh
Confidence 9999997653
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=395.41 Aligned_cols=286 Identities=20% Similarity=0.272 Sum_probs=228.4
Q ss_pred ccCCCCCceeccCCCCCCCHH-HHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCC
Q psy8733 45 MSSAAHPVINFGAGPAKLPRE-VLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGG 123 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~-Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gg 123 (621)
.|...+..++|+|||+.+|++ |++++.+.+ .+.+||+++|.++++++|++++++||++++++|+|++||
T Consensus 6 ~~~~~~~~~~f~~Gp~~~~~~~v~~a~~~~~----------~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs 75 (378)
T PRK03080 6 IPALRPADPRFSSGPCKKRPGWQLEALADAL----------LGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGS 75 (378)
T ss_pred CCCcCCCCCCcCCCCcCCChHHHHHHHHhhh----------cccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCc
Confidence 354435568899999999999 999999775 225799999999999999999999999888899999999
Q ss_pred cchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHH-HHHhCC-ceeeecc
Q psy8733 124 GTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAE-AEKYGK-VNLVIPK 201 (621)
Q Consensus 124 gT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~-a~~~G~-~~~~~~~ 201 (621)
||+ +|++++.||+. +++++++.+|.|+++|.++ ++++|. ...
T Consensus 76 ~T~-------------------------------~~~~~~~~l~~-~~~~~vi~~g~f~~~~~~~~~~~~g~~~v~---- 119 (378)
T PRK03080 76 DTG-------------------------------AWEMALWSLLG-ARRVDHLAWESFGSKWATDVVKQLKLEDPR---- 119 (378)
T ss_pred hHH-------------------------------HHHHHHHhcCC-CCcceEEEeCHHHHHHHHHHHhhcCCCCce----
Confidence 999 45556777764 2467788899999999985 467775 322
Q ss_pred cccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEec
Q psy8733 202 VSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCD 281 (621)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~th 281 (621)
.+..+|+..++++ ++ +. ++.|++||
T Consensus 120 ----------------------------~~~~~~g~~~d~~------------------------~i--~~-~~~V~~~h 144 (378)
T PRK03080 120 ----------------------------VLEADYGSLPDLS------------------------AV--DF-DRDVVFTW 144 (378)
T ss_pred ----------------------------EeccCCCCCCCHh------------------------hc--CC-CCCEEEEe
Confidence 2333455443322 22 11 56799999
Q ss_pred ccccccccccc--cc-ccCCCcEEEecccccCCCcccccccceEEeccccccC-CCccEEEEEchhHHhhhCCCC-----
Q psy8733 282 NETVDGVEFNY--IP-DSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPIT----- 352 (621)
Q Consensus 282 nET~tGv~~p~--i~-~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~~----- 352 (621)
+||+||+++|+ |+ +.+|++++||++|++|+.|+|++++|++++|+||||+ |+|+|++|+|+++++++.+..
T Consensus 145 ~~t~tG~~~pi~~I~~~~~g~~~vVDa~qs~G~~pidv~~iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~ 224 (378)
T PRK03080 145 NGTTTGVRVPVARWIGADREGLTICDATSAAFALPLDWSKLDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPI 224 (378)
T ss_pred cCCccceeccchhhccccCCCeEEEecccccccCCCCHHHCcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCC
Confidence 99999999997 44 5679999999999999999999999999999999995 999999999999999887632
Q ss_pred Cceeeccc---cc---cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCC
Q psy8733 353 PTVFHFKI---NA---DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCR 426 (621)
Q Consensus 353 P~~ld~~~---~~---~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~R 426 (621)
|.|+|+.. .. ...++++||++.+++++.++|+|+.++||++++++|++++++++++.|++++++.....++..|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 304 (378)
T PRK03080 225 PKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATR 304 (378)
T ss_pred chhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCcccc
Confidence 34565544 11 1245789999999999999999999987899999999999999999999998665554345567
Q ss_pred CCCcc
Q psy8733 427 SRMNV 431 (621)
Q Consensus 427 S~~nv 431 (621)
|++++
T Consensus 305 s~~i~ 309 (378)
T PRK03080 305 SNTSV 309 (378)
T ss_pred CccEE
Confidence 75543
|
|
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=364.56 Aligned_cols=290 Identities=20% Similarity=0.342 Sum_probs=251.3
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
.||.|||+.+|++|++||.+.+ ..|+|++|.+|+++.++.++.+|.+.+.+. +.+.|+||.
T Consensus 19 ~L~gPGPsnl~~~V~~A~~~~~------------lgh~sPe~~qIm~~v~egikyVFkT~n~~t-f~isgsGh~------ 79 (385)
T KOG2862|consen 19 TLLGPGPSNLSGRVQEAMSRPS------------LGHMSPEFVQIMDEVLEGIKYVFKTANAQT-FVISGSGHS------ 79 (385)
T ss_pred eeecCCCcCCCHHHHHhhcCCc------------cccCCHHHHHHHHHHHHHHHHHhccCCCce-EEEecCCcc------
Confidence 4999999999999999998876 789999999999999999999999988754 445789999
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
+||+++.|++.|||+++++.+|.||+||++.++|+|+.
T Consensus 80 -------------------------g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~----------------- 117 (385)
T KOG2862|consen 80 -------------------------GWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAE----------------- 117 (385)
T ss_pred -------------------------hHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCce-----------------
Confidence 55567889999999999999999999999999999973
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
|+.|+.+||+.+..|.+.+ .+. ..++++|++||+||+||+.+|+
T Consensus 118 ---------------V~~v~~~~G~~~~le~i~~--------------------~ls-qh~p~~vfv~hgdsSTgV~q~~ 161 (385)
T KOG2862|consen 118 ---------------VDVVEADIGQAVPLEEITE--------------------KLS-QHKPKAVFVTHGDSSTGVLQDL 161 (385)
T ss_pred ---------------eeEEecCcccCccHHHHHH--------------------HHH-hcCCceEEEEecCccccccchH
Confidence 3446788999988777521 121 2578999999999999999995
Q ss_pred ------ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCC--CC--ceeecc
Q psy8733 293 ------IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPI--TP--TVFHFK 359 (621)
Q Consensus 293 ------i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~--~P--~~ld~~ 359 (621)
++++++++|+||+++|+|+.|+.+|+|+ ++++++||.|| |+|++++..|+++++++... .| .|||+.
T Consensus 162 ~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~ 241 (385)
T KOG2862|consen 162 LAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDIL 241 (385)
T ss_pred HHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHH
Confidence 4578999999999999999999999998 99999999997 99999999999999998653 23 377765
Q ss_pred ccc-------cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCccc
Q psy8733 360 INA-------DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVT 432 (621)
Q Consensus 360 ~~~-------~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~ 432 (621)
... +....+.|||+..+|+|.+||+.|.++ |++++++||+++++.++..|+++| +..+.++++.|+|+
T Consensus 242 ~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~ee-GL~~~~~rH~e~s~~l~~~l~~~G-Lq~fv~~e~~rlpt--- 316 (385)
T KOG2862|consen 242 RLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEE-GLENSWRRHREMSKWLKLSLEALG-LQLFVVDEELRLPT--- 316 (385)
T ss_pred hhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC-ccceecChhhccCc---
Confidence 421 223445799999999999999999999 999999999999999999999986 99999999999975
Q ss_pred ccccccccccCCchh
Q psy8733 433 DIFFTFSHVQTGSAF 447 (621)
Q Consensus 433 ~~~~t~~~~~~~~~~ 447 (621)
+|.+.+|.+..+
T Consensus 317 ---vttv~vp~gvDw 328 (385)
T KOG2862|consen 317 ---VTTVKVPYGVDW 328 (385)
T ss_pred ---ceeeecCCCCCH
Confidence 688999998644
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=349.35 Aligned_cols=305 Identities=18% Similarity=0.236 Sum_probs=237.9
Q ss_pred cccccccchhhhhhccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHh
Q psy8733 31 IRNTYLDSRIHTTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELL 109 (621)
Q Consensus 31 ~~~~~~~~~~~~~~m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll 109 (621)
.|.+|+ .+.+.. .+..+|+++++.+++|+.|++++.++++.|..+ +++..|. +....+.++++|+.+++|+
T Consensus 8 ~r~~fp--~l~~~~---~~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an---~~r~~~~~~~~~t~~~e~aRe~va~~~ 79 (405)
T COG0520 8 VRADFP--ALKREV---GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNAN---VHRGAHTLAEEATDLYEAAREAVARFL 79 (405)
T ss_pred HHhhCH--HHhhcc---CCCeEEecCcccccCCHHHHHHHHHHHHhhcCC---cCcccchHHHHHHHHHHHHHHHHHHHh
Confidence 666666 443332 225689999999999999999999998776543 3333444 5567889999999999999
Q ss_pred CCCCCCEEEEEcCCcchhhhHHHHHHhhhccC--CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHH
Q psy8733 110 NVPNNYKILFLQGGGTGMFAAVAMNLISSSMN--VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAA 187 (621)
Q Consensus 110 ~~p~~yeI~f~~gggT~~~~a~alNlla~~~~--~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~ 187 (621)
|+++..+|+|+ .|+|+ +||+++.+++ +++||+|+++.. | .+.|++ .|..
T Consensus 80 ~a~~~~eIvft-~~tT~-----aln~va~~l~~~~~~gdeIv~s~~------E-H~sn~~----------------pw~~ 130 (405)
T COG0520 80 NADSSDEIVFT-RGTTE-----ALNLVARGLGRSLKPGDEIVVSDL------E-HHSNIV----------------PWQE 130 (405)
T ss_pred CCCCCCeEEEe-CChhH-----HHHHHHHHhhhhhcCCCEEEEccC------c-chhhHH----------------HHHH
Confidence 99864589998 56888 8999999997 899999999864 2 255664 2788
Q ss_pred HHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccc
Q psy8733 188 EAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQST 267 (621)
Q Consensus 188 ~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~ 267 (621)
.+++.|.+..+++.. ..+.++ .+.
T Consensus 131 ~~~~~Ga~v~~i~~~-------------------------------------------------------~~g~~~-~~~ 154 (405)
T COG0520 131 LAKRTGAKVRVIPLD-------------------------------------------------------DDGLLD-LDA 154 (405)
T ss_pred HHHhcCcEEEEEecC-------------------------------------------------------CCCCcC-HHH
Confidence 899999765544321 001111 122
Q ss_pred c--CCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEE
Q psy8733 268 W--NRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITV 337 (621)
Q Consensus 268 l--~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~ 337 (621)
+ .++++|++|+++|.+|++|+++|+ +++++|++++||++|++|+.|+|++++| |+++|+|||+ ||.|+|+
T Consensus 155 ~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGv 234 (405)
T COG0520 155 LEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGV 234 (405)
T ss_pred HHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEE
Confidence 2 478899999999999999999996 4568999999999999999999999987 9999999977 7999999
Q ss_pred EEEchhHHhhhCCCCC--ceeecccc------ccCC--CccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8733 338 VIVREDLLEYALPITP--TVFHFKIN------ADNN--SVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY 407 (621)
Q Consensus 338 livr~~ll~~~~~~~P--~~ld~~~~------~~~~--s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~ 407 (621)
+|+|+++++++.|... .+.++... .+.+ ...+|||+..++++++|++|+.++ |+++++++.++++++++
T Consensus 235 Ly~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~i-g~~~i~~~e~~L~~~~~ 313 (405)
T COG0520 235 LYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEI-GMEAIEAHERELTEYLL 313 (405)
T ss_pred EEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 9999999999876432 22222221 1222 234799999999999999999999 89999999999999999
Q ss_pred HHHHccCCcccCccCCCCCCCC
Q psy8733 408 QEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 408 e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
+.|.+++++.+.....+.|+++
T Consensus 314 ~~L~~~~~v~i~g~~~~~r~~~ 335 (405)
T COG0520 314 EGLSELPGVEIYGPPDADRGGI 335 (405)
T ss_pred HHHhcCCCeEEecCCcccCceE
Confidence 9999999877654332455553
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=340.24 Aligned_cols=284 Identities=18% Similarity=0.244 Sum_probs=226.0
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
.+.+||+|||+++|++|+++|.+++ ++||+++|.++++++|+.+++++|++.++.++| +++||+
T Consensus 8 ~~~~l~~pGP~~~~~~V~~a~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~-~~~gt~--- 71 (401)
T PLN02409 8 GRNHLFVPGPVNIPERVLRAMNRPN------------EDHRSPAFPALTKELLEDVKYIFKTKSGTPFIF-PTTGTG--- 71 (401)
T ss_pred CCceeccCCCCCCCHHHHHHhcCCC------------CCCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEE-eCCcHH---
Confidence 4568999999999999999998765 689999999999999999999999986555555 578898
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+++++..|++++||++++..+|+|+.+|.+.++++|...+..+
T Consensus 72 ----------------------------a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~--------- 114 (401)
T PLN02409 72 ----------------------------AWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVE--------- 114 (401)
T ss_pred ----------------------------HHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEE---------
Confidence 4455667788888999888899999999999999986543322
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCC--CCceEEEEeccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD--PEASYLYYCDNETVDG 287 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~--~~t~~V~~thnET~tG 287 (621)
.+|+..+++|+++ +.+.-+ +++++|+++|+||+||
T Consensus 115 -----------------------~~~~~~~~~~~l~--------------------~~l~~~~~~~~k~v~~~~~~~~tG 151 (401)
T PLN02409 115 -----------------------SPWGQGADLDILK--------------------SKLRQDTNHKIKAVCVVHNETSTG 151 (401)
T ss_pred -----------------------CCCCCCCCHHHHH--------------------HHHhhCcCCCccEEEEEeeccccc
Confidence 2233223333320 111111 3799999999999999
Q ss_pred ccccc-----c--cccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCC--CCce
Q psy8733 288 VEFNY-----I--PDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPI--TPTV 355 (621)
Q Consensus 288 v~~p~-----i--~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~--~P~~ 355 (621)
+.+|+ + ++++|+++|||++|++|+.|+|+++|+ ++++|+|||+ ||+|+|++++++++++++.+. .|.+
T Consensus 152 ~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~ 231 (401)
T PLN02409 152 VTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVF 231 (401)
T ss_pred ccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCee
Confidence 99996 5 667899999999999999999999886 9999999999 599999999999999987653 2345
Q ss_pred eeccccc---cCC-CccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcc
Q psy8733 356 FHFKINA---DNN-SVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNV 431 (621)
Q Consensus 356 ld~~~~~---~~~-s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv 431 (621)
++|.... +.+ .+.+|||+..++++.++++++.++ |++++++|++++++++++.|+++ |+.+...++..||++.+
T Consensus 232 ~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~-G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~ 309 (401)
T PLN02409 232 FDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEE-GLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVT 309 (401)
T ss_pred cCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceE
Confidence 6654321 122 236799999999999999999988 89999999999999999999988 57766544456776543
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=331.82 Aligned_cols=291 Identities=21% Similarity=0.276 Sum_probs=218.8
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+|||+|||+++|+.|++++.+++.++..++.+ ..+|++.++.++++++|+.+++++|++++++|+|+ +|+|.+
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~-~~~t~a---- 73 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHS--GVSHRSREFAEILEEAREALAKLLGAPPDEEVVFT-SNGTEA---- 73 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTST--SSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEE-SSHHHH----
T ss_pred CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcc--cccchhhhhhHHHHHHHHHHHHhcCCccccccccc-cccchh----
Confidence 69999999999999999999999888776643 36889999999999999999999999986789987 567883
Q ss_pred HHHHhhhccCCCCCceeEeecCCcchhHHHHHHHh---hCCCCcEEEEEcChHHHH--HHHHHHHhCCceeeeccccccc
Q psy8733 132 AMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNL---IGRTGKADYVVTGSWSKK--AAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 132 alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL---~~~g~~~~~v~tG~~~~~--~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
+|+ ++.++ +++|+++++...++++.+ |...++++|....+++..
T Consensus 74 -~~~--------------------------~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~---- 122 (371)
T PF00266_consen 74 -LNA--------------------------VASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD---- 122 (371)
T ss_dssp -HHH--------------------------HHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG----
T ss_pred -hhh--------------------------hhhccccccccccccccccccccccccccccccccchhhhcccccc----
Confidence 333 33444 567788888888999987 777788888654433211
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
+...++++++ +-.+++++++|+++|++|.+
T Consensus 123 ----------------------------~~~~~~~~~~----------------------~~~l~~~~~lv~~~~~~~~t 152 (371)
T PF00266_consen 123 ----------------------------PGGSLDLEDL----------------------EEALNPDTRLVSISHVENST 152 (371)
T ss_dssp ----------------------------TTSSCSHHHH----------------------HHHHHTTESEEEEESBETTT
T ss_pred ----------------------------ccchhhhhhh----------------------hhhhccccceEEeecccccc
Confidence 1111111111 01346899999999999999
Q ss_pred cccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCce--ee
Q psy8733 287 GVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTV--FH 357 (621)
Q Consensus 287 Gv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~--ld 357 (621)
|+++|+ +++++|+++++|++|++|..|+|+++++ ++++|+||++||+|+|++++|++++++++|..+.. .+
T Consensus 153 G~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~ 232 (371)
T PF00266_consen 153 GVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLD 232 (371)
T ss_dssp TBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTT
T ss_pred cEEeeeceehhhhhccCCceeEechhccccccccccccccceeeecccccCCCCchhhheehhhhhhccccccccccccc
Confidence 999996 3467899999999999999999999987 79999999557999999999999999997654332 11
Q ss_pred ccc-----cccCCCc--cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCc
Q psy8733 358 FKI-----NADNNSV--YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMN 430 (621)
Q Consensus 358 ~~~-----~~~~~s~--~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~n 430 (621)
... ......+ .+|||+..++++..+++++.+. |++++++|+.++++++++.|++++++.+...+.+.|++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i 311 (371)
T PF00266_consen 233 FPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEI-GIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSI 311 (371)
T ss_dssp HHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTE
T ss_pred cccchhcccccccccccccceeeehhhhHHHHHhhhhcc-ccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccce
Confidence 111 0112222 3699999999999999999776 8999999999999999999999987666443444555444
Q ss_pred c
Q psy8733 431 V 431 (621)
Q Consensus 431 v 431 (621)
+
T Consensus 312 ~ 312 (371)
T PF00266_consen 312 V 312 (371)
T ss_dssp E
T ss_pred E
Confidence 3
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=312.93 Aligned_cols=281 Identities=21% Similarity=0.259 Sum_probs=214.2
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
+.++|+|||+.+++.|++++... ..||+++|.++++++|+.+++++|++++++.+++++|||+
T Consensus 3 ~~~l~~pgp~~~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~---- 65 (363)
T TIGR02326 3 NYLLLTPGPLTTSRTVKEAMLFD-------------WCTWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTF---- 65 (363)
T ss_pred ceeEecCCCCCCCHHHHHHhCCC-------------CCCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHH----
Confidence 36799999999999999998775 3578889999999999999999999875544444588999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
++++++.+++.++++++++.+|.|+.++...++++|...+..+.
T Consensus 66 ---------------------------al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~--------- 109 (363)
T TIGR02326 66 ---------------------------AVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDT--------- 109 (363)
T ss_pred ---------------------------HHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC---------
Confidence 33345667777778888888999999888888999865433221
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
+|....+++.+ .+.+..++++++|+++|+||+||+++
T Consensus 110 -----------------------~~~~~~d~~~l--------------------~~~l~~~~~~~~v~~~~~~~~tG~~~ 146 (363)
T TIGR02326 110 -----------------------GEVEPPDVVEV--------------------EAILAADPAITHIALVHCETTTGILN 146 (363)
T ss_pred -----------------------CCCCCCCHHHH--------------------HHHHhhCCCccEEEEEeecCCccccC
Confidence 12222222221 01122235678899999999999999
Q ss_pred cc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCC-Cceeeccc-
Q psy8733 291 NY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPIT-PTVFHFKI- 360 (621)
Q Consensus 291 p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~-P~~ld~~~- 360 (621)
|+ +++++|+++++|++|++|+.|+|+++|+ ++++|+|||+ ||+|+|++++++++++++.+.. +.+++...
T Consensus 147 ~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 226 (363)
T TIGR02326 147 PIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQ 226 (363)
T ss_pred cHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHH
Confidence 96 4568899999999999999999999886 9999999999 6999999999999988765432 22333211
Q ss_pred ---cc-cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCC
Q psy8733 361 ---NA-DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 361 ---~~-~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
.. ..+.+.+|+|++.++++.++++++.++||++++++++.++++++++.|++++ +.... .++.|+++
T Consensus 227 ~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~~~~~~~ 297 (363)
T TIGR02326 227 WRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALG-FEPLL-DDEIQSPI 297 (363)
T ss_pred HHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC-Ceecc-CcccCCce
Confidence 11 1233446899999999999999998887899999999999999999999884 54432 23345654
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=298.46 Aligned_cols=347 Identities=21% Similarity=0.250 Sum_probs=259.3
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
+.++|+|||.++++.|+++|++. ..||+++|.+.++++|+.+++++|++++++++++.++||.
T Consensus 5 ~~~~~~pgP~~~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~---- 67 (368)
T PRK13479 5 DPLLLTPGPLTTSRTVREAMLRD-------------WGSWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTF---- 67 (368)
T ss_pred CceeecCCCCCCCHHHHHHhCCC-------------CCCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHH----
Confidence 45699999999999999998775 3577889999999999999999999765565656688999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
++++++.++..+|+++.+..+|.|+.+|...++++|...+..+.
T Consensus 68 ---------------------------~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~--------- 111 (368)
T PRK13479 68 ---------------------------SVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDT--------- 111 (368)
T ss_pred ---------------------------HHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEEC---------
Confidence 34445666777778888888899999888888888864333221
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
+|...++++++ .+.+..++++++|.++|+||+||+.+
T Consensus 112 -----------------------~~~~~~d~~~l--------------------~~~l~~~~~~~~v~~~~~~~~tG~~~ 148 (368)
T PRK13479 112 -----------------------GEDEPPDAAEV--------------------EAALAADPRITHVALVHCETTTGILN 148 (368)
T ss_pred -----------------------CCCCCCCHHHH--------------------HHHHHhCCCCcEEEEEcccCcccccc
Confidence 11112222221 01112235678999999999999999
Q ss_pred cc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCCc-eeecccc
Q psy8733 291 NY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITPT-VFHFKIN 361 (621)
Q Consensus 291 p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~-~ld~~~~ 361 (621)
|+ +++++|+++++|++|++|..|+|+++++ ++++|+|||+ ||+|+|++++++++++++....+. ++|+...
T Consensus 149 ~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (368)
T PRK13479 149 PLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQ 228 (368)
T ss_pred CHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHH
Confidence 95 4567899999999999999999999875 8889999998 799999999999999887654332 3443221
Q ss_pred ----ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccc
Q psy8733 362 ----ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFT 437 (621)
Q Consensus 362 ----~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t 437 (621)
.+.+...+||++.+++++.++++++.++||++++.+++.++++++++.|++++ +.... +++.|++..++
T Consensus 229 ~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~~~~~~~~~~----- 301 (368)
T PRK13479 229 WAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALG-FEPLL-DAEIQSPIIVT----- 301 (368)
T ss_pred HhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC-CcccC-CchhcCceEEE-----
Confidence 12234456999999999999999998887899999999999999999999984 65432 23345543222
Q ss_pred cccccCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHH
Q psy8733 438 FSHVQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK 517 (621)
Q Consensus 438 ~~~~~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~ 517 (621)
+..
T Consensus 302 --------------------------------------------------~~~--------------------------- 304 (368)
T PRK13479 302 --------------------------------------------------FHA--------------------------- 304 (368)
T ss_pred --------------------------------------------------EEC---------------------------
Confidence 000
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCC-CCccceeeccCCCHHHHH
Q psy8733 518 RQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRL-VGGIRASIYNAITVDEAV 596 (621)
Q Consensus 518 ~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~-~~~~r~~~~~a~~~~~~~ 596 (621)
+ .......+++.+.++++||+...|... .+.+|++.+...+.||++
T Consensus 305 --------------------------------~-~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~ 351 (368)
T PRK13479 305 --------------------------------P-ADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIR 351 (368)
T ss_pred --------------------------------C-CCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHH
Confidence 0 000011245777888889998776543 567999998899999999
Q ss_pred HHHHHHHHHHHHcC
Q psy8733 597 ILVKFMKEFRHKHS 610 (621)
Q Consensus 597 ~l~~~~~~~~~~~~ 610 (621)
.+++.|+++.++.+
T Consensus 352 ~~l~~L~~~l~~~~ 365 (368)
T PRK13479 352 RLVAAIAEALYWMG 365 (368)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999887654
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=278.75 Aligned_cols=267 Identities=21% Similarity=0.283 Sum_probs=207.0
Q ss_pred eccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCC-EEEEEcCCcchhhhHHH
Q psy8733 54 NFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNY-KILFLQGGGTGMFAAVA 132 (621)
Q Consensus 54 lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~y-eI~f~~gggT~~~~a~a 132 (621)
+|+|||+.+++.|+++++.. .+||++.|.++++++|+.+++++|+++++ +|+|+ +|||+
T Consensus 2 ~~~p~p~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~-~~gt~------ 61 (355)
T TIGR03301 2 LLTPGPLSTSATVRDAMLVD-------------WCHWDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQ-GSGTF------ 61 (355)
T ss_pred cCcCCCCCCCHHHHHHhhhh-------------ccCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEe-CCcHH------
Confidence 79999999999999999884 47888899999999999999999998765 45554 78899
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
+++.++.+++.+++++.++.+|.|+.++...++++|...+..+.
T Consensus 62 -------------------------~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~----------- 105 (355)
T TIGR03301 62 -------------------------AVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLNF----------- 105 (355)
T ss_pred -------------------------HHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHcCCceEEEec-----------
Confidence 34445666667778888888899988777788888865333221
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
++...+++|++ .+.+..++++++|+++|+||.+|+.+|+
T Consensus 106 ---------------------~~~~~~d~~~l--------------------~~~l~~~~~~~~v~~~~~~~~~G~~~~~ 144 (355)
T TIGR03301 106 ---------------------SEYEPPDLNRI--------------------EEALAADPDITHVATVHHETTTGILNPL 144 (355)
T ss_pred ---------------------CCCCCCCHHHH--------------------HHHHHhCCCceEEEEEecCCcccchhHH
Confidence 11112222222 0111223567899999999999999995
Q ss_pred -----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCC-CCCceeecccc--
Q psy8733 293 -----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALP-ITPTVFHFKIN-- 361 (621)
Q Consensus 293 -----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~-~~P~~ld~~~~-- 361 (621)
+++++++++|+|+++++|+.|+++++++ ++++|.||++ ||+|+|++++++++++++.. ..|.++++...
T Consensus 145 ~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (355)
T TIGR03301 145 EAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWA 224 (355)
T ss_pred HHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHH
Confidence 4568899999999999999999999876 8999999998 69999999999999988763 23434443221
Q ss_pred --ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 362 --ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 362 --~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
...+.+.+||++..++++.++++++.++|++++..++.+++++++++.|++++ +..
T Consensus 225 ~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g-~~~ 282 (355)
T TIGR03301 225 YMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALG-FQP 282 (355)
T ss_pred HhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcC-Cee
Confidence 11234567999999999999999999886699999999999999999999874 543
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=274.80 Aligned_cols=287 Identities=16% Similarity=0.127 Sum_probs=220.4
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
.+|+|+++++|+.++|+++|..++..+.+++.|+|.. +.+..++++++|+.+++++|+++ ++|+|+ +|||+
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~---G~~A~~~ve~AR~~iA~llga~~-~eIiFT-SG~TE---- 72 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSF---GREARKAVEEAREQIAKLLGADP-EEIIFT-SGATE---- 72 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccchhHh---HHHHHHHHHHHHHHHHHHhCCCC-CeEEEe-cCCcH----
Confidence 5899999999999999999999999988888875432 66889999999999999999987 599997 78999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
+.|++-.+ +..-. ...++.-++++..-+|+++...-++
T Consensus 73 -snNlaI~g----------------------~~~a~-~~~~~~~HIIts~iEH~aVl~~~~~------------------ 110 (386)
T COG1104 73 -SNNLAIKG----------------------AALAY-RNAQKGKHIITSAIEHPAVLNTCRY------------------ 110 (386)
T ss_pred -HHHHHHHh----------------------hHHhh-hcccCCCeEEEcccccHHHHHHHHH------------------
Confidence 67762211 00001 1112234555556677665443222
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEecccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNETVDGV 288 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnET~tGv 288 (621)
.+.++++|+|++..+ .|.+. ++++ .++++|.+|++-|.++-+|+
T Consensus 111 --Le~~g~~Vtyl~V~~-------------------------------~G~v~-~e~L~~al~~~T~LVSim~aNnE~G~ 156 (386)
T COG1104 111 --LERQGFEVTYLPVDS-------------------------------NGLVD-LEQLEEALRPDTILVSIMHANNETGT 156 (386)
T ss_pred --HHhcCCeEEEeCCCC-------------------------------CCeEc-HHHHHHhcCCCceEEEEEecccCeee
Confidence 123466777774211 12221 2333 47899999999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecccc
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKIN 361 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~ 361 (621)
++|+ ++++++++|++|++|++|..|||++++ |++.+|+||..||.|+|++|+|++.. ..|- + +...
T Consensus 157 IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~~-----~~p~-i-~GGg 229 (386)
T COG1104 157 IQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVR-----LEPL-I-HGGG 229 (386)
T ss_pred cccHHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCceEEEEECCCCc-----cCce-e-ccCc
Confidence 9997 457899999999999999999999995 59999999999999999999987752 2232 2 2334
Q ss_pred ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc-CCcccCccCCCCCCCCccc
Q psy8733 362 ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS-DKFYECPVQAGCRSRMNVT 432 (621)
Q Consensus 362 ~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~-~g~~~~~~~~~~RS~~nv~ 432 (621)
++.+.+.+|.|+++|.++++|++...+. ++...++.+.+.++|.+.|.+. ++++++. +++.|+|.+++
T Consensus 230 QE~g~RsGTenv~~Ivg~~~A~~~a~~~--~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g-~~~~rlP~~~~ 298 (386)
T COG1104 230 QERGLRSGTENVPGIVGFGKAAEIAVEE--LEEENARLRKLRDRLEDGLLEIIPDVYLNG-DDEPRLPNILN 298 (386)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCcEEEcC-CcccCCCCeEE
Confidence 5677889999999999999999999885 9999999999999999999976 7777766 34789998775
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-30 Score=278.67 Aligned_cols=283 Identities=17% Similarity=0.168 Sum_probs=209.8
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCC-CcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTG-ISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g-~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
+.+||+++|.+++|++|++++.+++.++..+. .+ .++++.++.+.++++|+.+++++|+++.++|+|+ +|+|+
T Consensus 23 ~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t-~g~t~-- 96 (406)
T PRK09295 23 PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRG---IHTLSAQATEKMENVRKQAALFINARSAEELVFV-RGTTE-- 96 (406)
T ss_pred ceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCc---ccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEe-CCHHH--
Confidence 36999999999999999999999987654322 12 3445778999999999999999998544589987 56888
Q ss_pred hHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|+++.++ .+++||+|+++.. .+ +.++. .|...+++.|...+.++..
T Consensus 97 ---~l~~~~~~~~~~~~~~gd~vl~~~~----~~---~s~~~----------------~~~~~~~~~g~~v~~v~~~--- 147 (406)
T PRK09295 97 ---GINLVANSWGNSNVRAGDNIIISEM----EH---HANIV----------------PWQMLCARVGAELRVIPLN--- 147 (406)
T ss_pred ---HHHHHHHHhhhhcCCCcCEEEECcc----hh---hHHHH----------------HHHHHHHHcCcEEEEEecC---
Confidence 788877665 4678888887753 22 12221 2455677778643332210
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
+...++.+++ + -.+++++++|+++|.+|.
T Consensus 148 -----------------------------~~~~~d~~~l---------------------~-~~i~~~t~lv~l~~~~n~ 176 (406)
T PRK09295 148 -----------------------------PDGTLQLETL---------------------P-ALFDERTRLLAITHVSNV 176 (406)
T ss_pred -----------------------------CCCCCCHHHH---------------------H-HhcCCCcEEEEEecchhc
Confidence 0000111111 1 125678999999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCc--e-
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPT--V- 355 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~--~- 355 (621)
||+++|+ +++++|+++++|++|++|..|+|+++++ ++++|+||.+||+|+|++++++++++++.+.... .
T Consensus 177 tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~ 256 (406)
T PRK09295 177 LGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMI 256 (406)
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCcee
Confidence 9999996 3467899999999999999999998875 9999999988999999999999998876542111 0
Q ss_pred --eeccc---ccc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 356 --FHFKI---NAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 356 --ld~~~---~~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+++.. ... .+...+|||+.+++++.+|++++.+. |++++.++.+++++++++.|++++|+.+.
T Consensus 257 ~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~~~~~~~ 326 (406)
T PRK09295 257 ATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSAL-GLNNIAEYEQNLMHYALSQLESVPDLTLY 326 (406)
T ss_pred eeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 11100 001 12235799999999999999999998 89999999999999999999998776554
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-30 Score=281.63 Aligned_cols=306 Identities=17% Similarity=0.205 Sum_probs=220.8
Q ss_pred cccchhccccccccchhhhhhccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHH
Q psy8733 24 SLYLGNIIRNTYLDSRIHTTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQA 103 (621)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~ 103 (621)
+..+|...|..|+ .+..+. .+. +.+||++++++++|+.|++++.+++.++.....+- .++.+.++.+.++++|+
T Consensus 10 ~~~~~~~~r~~fp--~~~~~~-~~~-~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~ 83 (424)
T PLN02855 10 SVSLGAETRPDFP--ILDQTV-NGS-KLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRG--IHALSAKATDAYELARK 83 (424)
T ss_pred HHHHHHHHHHhCc--hhcccc-CCC-CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCc--cchHHHHHHHHHHHHHH
Confidence 3457777887777 221110 112 46999999999999999999999987765432110 12335677889999999
Q ss_pred HHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcCh
Q psy8733 104 ALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGS 180 (621)
Q Consensus 104 ~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~ 180 (621)
.+++++|++++++|+|+ +|+|+ ++|++..++ .+++||+|+++.. .+ +.++
T Consensus 84 ~la~~~~~~~~~~v~~t-~g~t~-----al~~i~~~~~~~~~~~gd~vl~~~~----~~---~s~~-------------- 136 (424)
T PLN02855 84 KVAAFINASTSREIVFT-RNATE-----AINLVAYTWGLANLKPGDEVILSVA----EH---HSNI-------------- 136 (424)
T ss_pred HHHHHcCCCCCCEEEEe-CCHHH-----HHHHHHHHhhhhcCCCcCEEEECCC----cc---HHHH--------------
Confidence 99999999655589998 57898 788877654 4677888877653 11 1111
Q ss_pred HHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCcc
Q psy8733 181 WSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYV 260 (621)
Q Consensus 181 ~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~ 260 (621)
..|...+++.|...+..+.. +...++++++
T Consensus 137 --~~~~~~a~~~g~~v~~v~~~--------------------------------~~~~~~~~~l---------------- 166 (424)
T PLN02855 137 --VPWQLVAQKTGAVLKFVGLT--------------------------------PDEVLDVEQL---------------- 166 (424)
T ss_pred --HHHHHHHHHcCCEEEEEecC--------------------------------CCCCcCHHHH----------------
Confidence 12455677777643332210 0000111221
Q ss_pred CCCCccccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCC
Q psy8733 261 SIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 261 ~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~ 333 (621)
++ .+++++++|+++|.++.||+++|+ +++++|+++++|++|++|..|+|+++++ ++++|+||++||+
T Consensus 167 -----~~-~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~ 240 (424)
T PLN02855 167 -----KE-LLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPT 240 (424)
T ss_pred -----HH-HhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCC
Confidence 01 245689999999999999999996 3567899999999999999999999875 8999999988999
Q ss_pred ccEEEEEchhHHhhhCCCCCc-------eeecccccc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 334 GITVVIVREDLLEYALPITPT-------VFHFKINAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~-------~ld~~~~~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
|+|++++++++++++.+.... +.++..... .+...+||++.+++++.++++++.++ |++++++++.++++
T Consensus 241 G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~ 319 (424)
T PLN02855 241 GIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEI-GMDRIHEYEVELGT 319 (424)
T ss_pred ccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 999999999998877543110 111111111 12345899999999999999999999 89999999999999
Q ss_pred HHHHHHHccCCcccC
Q psy8733 405 LLYQEIDNSDKFYEC 419 (621)
Q Consensus 405 ~L~e~L~~~~g~~~~ 419 (621)
++++.|++++|+.+.
T Consensus 320 ~l~~~L~~~~g~~i~ 334 (424)
T PLN02855 320 YLYEKLSSVPGVRIY 334 (424)
T ss_pred HHHHHHhcCCCEEEe
Confidence 999999998777654
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=273.17 Aligned_cols=282 Identities=18% Similarity=0.181 Sum_probs=209.2
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
..+||++++.+++|++|++++.+++.++.... .+..|. +..+.+.++++|+.+++++|+++..+|+|+ +|+|+
T Consensus 19 ~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~-~~~t~-- 92 (401)
T PRK10874 19 AGVYLDSAATALKPQAVIEATQQFYSLSAGNV---HRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWT-RGTTE-- 92 (401)
T ss_pred ceEEEeCCcccCCCHHHHHHHHHHHHhccCCC---CCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEE-CCHHH--
Confidence 47999999999999999999999997765331 112222 467889999999999999999545589987 56888
Q ss_pred hHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|+++.++ .+++||+|+++.. .+ +.++. .|...+++.|...+.++..
T Consensus 93 ---~i~~~~~~~~~~~~~~gd~vl~~~~----~~---~s~~~----------------~~~~~~~~~g~~v~~v~~~--- 143 (401)
T PRK10874 93 ---SINLVAQSYARPRLQPGDEIIVSEA----EH---HANLV----------------PWLMVAQQTGAKVVKLPLG--- 143 (401)
T ss_pred ---HHHHHHHHhhhccCCCcCEEEECCc----ch---HHHHH----------------HHHHHHHHhCCEEEEEecC---
Confidence 788888776 4788888888764 22 11221 2455677778643332210
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
+...++++++ + -.+++++++|++||.++.
T Consensus 144 -----------------------------~~~~~d~~~l---------------------~-~~i~~~t~lv~i~~~~n~ 172 (401)
T PRK10874 144 -----------------------------ADRLPDVDLL---------------------P-ELITPRTRILALGQMSNV 172 (401)
T ss_pred -----------------------------CCCcCCHHHH---------------------H-HhcCcCcEEEEEeCCccc
Confidence 0000111111 1 135678999999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCC--ce-
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITP--TV- 355 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P--~~- 355 (621)
||..+|+ +++++|+++++|++|++|..|+|+++++ ++++|+||.+||+|+|++++++++++++.+... ..
T Consensus 173 tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~ 252 (401)
T PRK10874 173 TGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKML 252 (401)
T ss_pred ccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcce
Confidence 9999996 4567899999999999999999998765 999999998899999999999999987754321 00
Q ss_pred --eeccccc--c--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 356 --FHFKINA--D--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 356 --ld~~~~~--~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
.++.... . .....+|||+.+++++.+|++++.+. |.+++.++++++++++++.|++++|+..
T Consensus 253 ~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~-g~~~~~~~~~~l~~~l~~~l~~~~g~~~ 320 (401)
T PRK10874 253 TEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADI-DINQAESWSRSLATLAEDALAKLPGFRS 320 (401)
T ss_pred EeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 1111100 1 12234799999999999999999998 8999999999999999999998876643
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=267.87 Aligned_cols=282 Identities=18% Similarity=0.185 Sum_probs=207.2
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCccccccc-ccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSH-RSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~sh-rs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
..+||++++.+++|++|++++.+++.++.... +...| .+.++.+.++++|+.+++++|+++..+|+|+ +|+|+
T Consensus 16 ~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t-~g~t~-- 89 (398)
T TIGR03392 16 GTVYLDSAATALKPQAVIDATQQFYRLSSGTV---HRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWT-RGTTE-- 89 (398)
T ss_pred CeEEeeCccccCCCHHHHHHHHHHHHhcCCCC---CCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEe-CChHH--
Confidence 46999999999999999999999986554322 11122 2456788999999999999999644589987 67899
Q ss_pred hHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|++..++ .+++||+|++... .+ +.|+ ..|...+++.|...+..+..
T Consensus 90 ---~l~~~~~~~~~~~~~~gd~Vl~~~~----~~---~s~~----------------~~~~~~~~~~g~~v~~v~~~--- 140 (398)
T TIGR03392 90 ---SINLVAQSYARPRLQPGDEIIVSEA----EH---HANL----------------IPWLMVAQQTGAKVVKLPIG--- 140 (398)
T ss_pred ---HHHHHHHHhhhccCCCCCEEEECCc----ch---hHHH----------------HHHHHHHHHcCcEEEEEecC---
Confidence 788877766 4788888888754 22 1222 12455677778654333210
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
.+| .++++++ + -.+++++++|+++|..+.
T Consensus 141 ---------------------------~~~--~~~~~~l---------------------~-~~i~~~t~lv~i~~~~n~ 169 (398)
T TIGR03392 141 ---------------------------ADL--LPDIRQL---------------------P-ELLTPRTRILALGQMSNV 169 (398)
T ss_pred ---------------------------CCC--CcCHHHH---------------------H-HHhccCceEEEEECcccc
Confidence 000 0111111 1 125678999999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCc--ee
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPT--VF 356 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~--~l 356 (621)
||..+|+ +++++|+++++|++|++|+.++|+++++ ++++|+||.+||+|+|++++++++++++.+.... +.
T Consensus 170 tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~ 249 (398)
T TIGR03392 170 TGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKML 249 (398)
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceE
Confidence 9999996 4568899999999999999999998765 8999999988999999999999998877542211 11
Q ss_pred ---ecccc--cc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 357 ---HFKIN--AD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 357 ---d~~~~--~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
++... .+ .+...+|||+.+++++.++++++.+. |++++.++..++++++++.|++++|+..
T Consensus 250 ~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~-g~~~i~~~~~~l~~~l~~~l~~l~g~~~ 317 (398)
T TIGR03392 250 SHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDI-DIAAAEAWSVSLADLAEERLAQLPGFRS 317 (398)
T ss_pred eeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 11000 01 12234799999999999999999888 8999999999999999999998876643
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=270.29 Aligned_cols=285 Identities=12% Similarity=0.064 Sum_probs=203.5
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+||++||++++|++|++++.+++.++...+.+ +.+.++.++.+.++++|+.+++++|++++ +|+|+ +|+|+
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~t-~~~t~----- 71 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHS--RTHLYGWESEDAVEKARAQVAALIGADPK-EIIFT-SGATE----- 71 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhCCCCCCh--hhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHH-----
Confidence 59999999999999999999998664332211 01234678899999999999999999754 78887 67888
Q ss_pred HHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 132 AMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 132 alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
++|++..++ -+++||+|++... .+ +. +...|... ++.|...+..+.
T Consensus 72 a~~~~l~~~~~~~~~~g~~vl~~~~----~h---~s----------------~~~~~~~~-~~~g~~v~~v~~------- 120 (364)
T PLN02651 72 SNNLAIKGVMHFYKDKKKHVITTQT----EH---KC----------------VLDSCRHL-QQEGFEVTYLPV------- 120 (364)
T ss_pred HHHHHHHHHHHhccCCCCEEEEccc----cc---HH----------------HHHHHHHH-HhcCCEEEEEcc-------
Confidence 566533221 1355666655432 11 11 11223323 355653322211
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV 288 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv 288 (621)
+|...++++++ + -.+++++++|+++|.++.||+
T Consensus 121 -------------------------~~~~~~d~~~l---------------------~-~~i~~~t~lv~v~~~~n~tG~ 153 (364)
T PLN02651 121 -------------------------KSDGLVDLDEL---------------------A-AAIRPDTALVSVMAVNNEIGV 153 (364)
T ss_pred -------------------------CCCCcCCHHHH---------------------H-HhcCCCcEEEEEECCCCCcee
Confidence 11111222221 0 135678999999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecccc
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKIN 361 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~ 361 (621)
.+|+ +++++|++++||++|++|+.|+|+++++ ++++|+|||+||+|+|++++|+++++++.|. +..+ .
T Consensus 154 ~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~---~~g~--~ 228 (364)
T PLN02651 154 IQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPL---MSGG--G 228 (364)
T ss_pred cccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCcc---ccCC--C
Confidence 9996 4568899999999999999999999976 9999999998899999999999988766442 2111 1
Q ss_pred ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc-cCCcccCcc-CCCCCCCCc
Q psy8733 362 ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN-SDKFYECPV-QAGCRSRMN 430 (621)
Q Consensus 362 ~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~-~~g~~~~~~-~~~~RS~~n 430 (621)
.+.+.+.+|||+.+++++.+||+++.+. .++++++++++++++++.|++ ++|+.+... +++.|++..
T Consensus 229 ~~~~~~~GT~~~~~~~~l~~al~~~~~~--~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i 297 (364)
T PLN02651 229 QERGRRSGTENTPLVVGLGAACELAMKE--MDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGT 297 (364)
T ss_pred ccCCccCCCccHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCE
Confidence 2234567999999999999999999874 599999999999999999986 677877643 445566543
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=290.72 Aligned_cols=296 Identities=14% Similarity=0.174 Sum_probs=202.8
Q ss_pred ccCCCCCceeccCCCCCCCHHHH-HHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEcC
Q psy8733 45 MSSAAHPVINFGAGPAKLPREVL-EEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPN-NYKILFLQG 122 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~Vl-ea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~-~yeI~f~~g 122 (621)
||.....+||++||.+++|+.++ +++.+++.++..+..+ .+..+....+.++++|+.++++||+++ +|+|+|+ .
T Consensus 29 fp~l~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s---~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFt-s 104 (805)
T PLN02724 29 FARLKGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHS---QSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFT-S 104 (805)
T ss_pred hhhcCCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCc---CcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEe-C
Confidence 34443579999999999776554 4455565544333322 222356788899999999999999965 4578997 5
Q ss_pred CcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccc
Q psy8733 123 GGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKV 202 (621)
Q Consensus 123 ggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~ 202 (621)
|+|+ ++|+++.++.|++||+|+++.. .. ..++ .|.+.|++.|.....++..
T Consensus 105 naT~-----alnlva~~l~~~~gd~Iv~t~~----eH---~svl-----------------~~~~~a~~~G~~v~~v~~~ 155 (805)
T PLN02724 105 GATA-----ALKLVGETFPWSSESHFCYTLE----NH---NSVL-----------------GIREYALEKGAAAIAVDIE 155 (805)
T ss_pred ChHH-----HHHHHHHHCCCCCCCeEEEeec----cc---cchH-----------------HHHHHHHHcCCeEEeccch
Confidence 7899 8999999999999999998743 11 1111 1345667778643332210
Q ss_pred ccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCc--ccc----CCCCCceE
Q psy8733 203 SKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQ--STW----NRDPEASY 276 (621)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~--~~l----~i~~~t~~ 276 (621)
. +...+.....+++ ...++ +... +.+ ..++.+++
T Consensus 156 ~-----~~~~~~~~~g~~~-----------------~~~~~------------------l~~~~~~~l~~~~~~~~~t~L 195 (805)
T PLN02724 156 E-----AANQPTNSQGSVV-----------------VKSRG------------------LQRRNTSKLQKREDDGEAYNL 195 (805)
T ss_pred h-----ccccccccccccc-----------------cchhh------------------hhhhhhhhhccccccCCCcce
Confidence 0 0000000000000 00000 0000 000 12356789
Q ss_pred EEEecccccccccccc--c---cccC--------CCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEE
Q psy8733 277 LYYCDNETVDGVEFNY--I---PDSQ--------GIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIV 340 (621)
Q Consensus 277 V~~thnET~tGv~~p~--i---~~~~--------g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~liv 340 (621)
|+++|..+.+|+++|+ + .+.. +++++|||+|++|+.|+|+++++ ++++|+|||+| |.|+|+||+
T Consensus 196 Va~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~v 275 (805)
T PLN02724 196 FAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLV 275 (805)
T ss_pred EEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCceEEEE
Confidence 9999999999999997 3 2221 36899999999999999999875 99999999998 999999999
Q ss_pred chhHHhhhCCCCCc--eee-------cc-cc--ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 341 REDLLEYALPITPT--VFH-------FK-IN--ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 341 r~~ll~~~~~~~P~--~ld-------~~-~~--~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
|+++++++.|.... ... +. .. .......+|||+.+|+++.+|++++.+. |++++.+|..++++++++
T Consensus 276 r~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~i-g~~~I~~~~~~L~~~l~~ 354 (805)
T PLN02724 276 RRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRL-TISAIAMHTWALTHYVAN 354 (805)
T ss_pred ehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 99998877653221 000 00 00 0122345899999999999999999999 899999999999999999
Q ss_pred HHHccC
Q psy8733 409 EIDNSD 414 (621)
Q Consensus 409 ~L~~~~ 414 (621)
.|.+++
T Consensus 355 ~L~~l~ 360 (805)
T PLN02724 355 SLRNLK 360 (805)
T ss_pred HHHhcc
Confidence 999875
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=257.46 Aligned_cols=266 Identities=23% Similarity=0.323 Sum_probs=198.2
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
.||+|||.++|++|++++.+.+ .+||++.+.++++++|+.+++++|+++.+.++++ +|||+ +
T Consensus 1 ~~~~~~~~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~-~~~t~-----a 62 (356)
T cd06451 1 LLLIPGPSNVPPRVLKAMNRPM------------LGHRSPEFLALMDEILEGLRYVFQTENGLTFLLS-GSGTG-----A 62 (356)
T ss_pred CcccCCCcCCCHHHHHHhCCCc------------cCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEe-cCcHH-----H
Confidence 4899999999999999997543 3688889999999999999999999655455554 77898 3
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
+++ ++.+++.+|+++++...++|+..|...+++.|...+..+..
T Consensus 63 l~~--------------------------~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------- 106 (356)
T cd06451 63 MEA--------------------------ALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKP---------- 106 (356)
T ss_pred HHH--------------------------HHHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecC----------
Confidence 443 33445566666666666777765667778888643332210
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEeccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDNETVDGVEFN 291 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thnET~tGv~~p 291 (621)
.+| .+++|++ +. .+++ ++++|++++.+|.+|...|
T Consensus 107 --------------------~~~--~~~~~~l---------------------~~-~i~~~~~~~v~i~~~~~~~G~~~~ 142 (356)
T cd06451 107 --------------------WGE--AVSPEEI---------------------AE-ALEQHDIKAVTLTHNETSTGVLNP 142 (356)
T ss_pred --------------------CCC--CCCHHHH---------------------HH-HHhccCCCEEEEeccCCCcccccC
Confidence 000 1112221 01 2344 7899999999999999998
Q ss_pred c-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCC---CCCceeeccc
Q psy8733 292 Y-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALP---ITPTVFHFKI 360 (621)
Q Consensus 292 ~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~---~~P~~ld~~~ 360 (621)
+ +++++|+++++|+++++|..++++.+++ +++.|+||++| |+|+|++++++++++++.. ..+.+++...
T Consensus 143 ~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (356)
T cd06451 143 LEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLL 222 (356)
T ss_pred HHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHH
Confidence 6 4568899999999999999999998765 88899999996 8999999999999887753 1223333221
Q ss_pred c---ccCC-CccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 361 N---ADNN-SVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 361 ~---~~~~-s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
. .... ..-+||++..++++.++++++.+. |++.+.++.+++++++++.|+++ |+..
T Consensus 223 ~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 282 (356)
T cd06451 223 LLKYWGEGYSYPHTPPVNLLYALREALDLILEE-GLENRWARHRRLAKALREGLEAL-GLKL 282 (356)
T ss_pred HHhhhcccCCCCCCChHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 1 1111 345799999999999999999987 89999999999999999999987 4544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=254.58 Aligned_cols=272 Identities=14% Similarity=0.114 Sum_probs=194.1
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+||+++|.+++|++|++++.+++.++.+.+. ..+|++.++.++++++|+.+++++|++.+ +|+|+ +|+|+
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~t-~~~t~----- 70 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPS---SMHSFGGEVGKAVEEAREQVAKLLGAEPD-EIIFT-SGGTE----- 70 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CcHHH-----
Confidence 5999999999999999999999876543332 25667888999999999999999999754 78887 57899
Q ss_pred HHHHhhhcc--CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 132 AMNLISSSM--NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 132 alNlla~~~--~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
++|++..++ .+++||+|++... .| +.+. . ....+++.|...+..+.
T Consensus 71 a~~~al~~~~~~~~~~~~vv~~~~----~~---~s~~----------------~-~~~~~~~~G~~v~~v~~-------- 118 (379)
T TIGR03402 71 SDNTAIKSALAAQPEKRHIITTAV----EH---PAVL----------------S-LCQHLEKQGYKVTYLPV-------- 118 (379)
T ss_pred HHHHHHHHHHHhcCCCCeEEEccc----cc---HHHH----------------H-HHHHHHHcCCEEEEEcc--------
Confidence 444433221 1244555555432 11 1111 1 11233446654332221
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
++...++++++ + -.+++++++|+++|.+|.+|+.
T Consensus 119 ------------------------~~~g~~~~~~l---------------------~-~~i~~~~~lv~i~~~~n~tG~~ 152 (379)
T TIGR03402 119 ------------------------DEEGRLDLEEL---------------------R-AAITDDTALVSVMWANNETGTI 152 (379)
T ss_pred ------------------------CCCCcCCHHHH---------------------H-HhcCCCcEEEEEEcccCCeeec
Confidence 00001222221 1 1245789999999999999999
Q ss_pred ccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccc
Q psy8733 290 FNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINA 362 (621)
Q Consensus 290 ~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~ 362 (621)
+|+ +++++|+++++|++|++|+.|+|+++++ ++++|+||++||+|+|+++++++.. + .|.+.. ...
T Consensus 153 ~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~~--~---~p~~~g--~~~ 225 (379)
T TIGR03402 153 FPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGTR--F---RPLLRG--GHQ 225 (379)
T ss_pred ccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCceEEEEECCCCC--C---CCcccC--Ccc
Confidence 996 4568899999999999999999999865 9999999977899999999998752 2 232211 112
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc-cCCcccCc
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN-SDKFYECP 420 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~-~~g~~~~~ 420 (621)
+...+.+|||+.+++++.++++++.+ +++.+.++.+++.+++++.|.+ ++++.+..
T Consensus 226 ~~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 282 (379)
T TIGR03402 226 ERGRRAGTENVPGIVGLGKAAELATE--HLEEENTRVRALRDRLEAGLLARIPDARLNG 282 (379)
T ss_pred CCCcCCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhhCCCEEEeC
Confidence 23345789999999999999999976 5899999999999999999985 77665543
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=248.08 Aligned_cols=275 Identities=15% Similarity=0.194 Sum_probs=190.9
Q ss_pred ceeccCCCC-CCCHHHHHHHHHHHHhhcc-CCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 52 VINFGAGPA-KLPREVLEEVKETLLDYES-TGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 52 ~~lf~aGPs-~~P~~Vlea~~~~l~~~~~-~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
+||++++.. +.|+.|++++.+.+.++.. .+.+ .++ .....+.++++|+.+++++|+++..+|+|+ +|+|+
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~g~t~-- 73 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRG----RYRLALRASREVEETRQLLAKLFNAPSSAHVVFT-NNATT-- 73 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHHHHHhcCCCCCcc----cchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEe-CCHHH--
Confidence 588988866 7999999999998876542 1111 122 234568899999999999999765578887 56888
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHH--HHHHHHHHHhCCceeeeccccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWS--KKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~--~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
+++++..+ -+++||+|++. ..++.+ ..|...++.+|...+..+.
T Consensus 74 ---al~~~~~~-~~~~gd~vl~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~v~~----- 119 (376)
T TIGR01977 74 ---ALNIALKG-LLKEGDHVITT-------------------------PMEHNSVARPLECLKEQIGVEITIVKC----- 119 (376)
T ss_pred ---HHHHHHHh-ccCCCCEEEEC-------------------------cchhhHHHHHHHHHHHHcCcEEEEEec-----
Confidence 34443222 13444444443 222222 2344566666754332211
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
++...++++++ + -.+++++++|++++.+|.|
T Consensus 120 ---------------------------~~~~~~d~~~l---------------------~-~~~~~~~~~v~~~~~~n~t 150 (376)
T TIGR01977 120 ---------------------------DNEGLISPERI---------------------K-RAIKTNTKLIVVSHASNVT 150 (376)
T ss_pred ---------------------------CCCCCcCHHHH---------------------H-HhcCCCCeEEEEECCCCCc
Confidence 01111122221 0 1245689999999999999
Q ss_pred cccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCC---c-
Q psy8733 287 GVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITP---T- 354 (621)
Q Consensus 287 Gv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P---~- 354 (621)
|...|+ +++++|+++|+|+++++|..++|+++++ ++++|+|||+ ||+|+|+++++++.. +.+... .
T Consensus 151 G~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~--~~~~~~~~~~~ 228 (376)
T TIGR01977 151 GTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIK--LKPLKSGGTGS 228 (376)
T ss_pred cccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCcC--cCceecCCCcc
Confidence 999995 4568899999999999999999998875 9999999999 599999999999862 222111 0
Q ss_pred ---eeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 355 ---VFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 355 ---~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+++.......+...+||++..++++.++++++.++ |++++.+|++++++++++.|.+.+|+.+.
T Consensus 229 ~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 295 (376)
T TIGR01977 229 HSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKI-GIANIAKKECMLTEKLLNGLREINKVKIY 295 (376)
T ss_pred ccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 11111111112345799999999999999999998 99999999999999999999988877654
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=249.95 Aligned_cols=283 Identities=17% Similarity=0.183 Sum_probs=203.6
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
..+||++++.+++|+.|++++.+++.+......+ -.|. +.++.+.++++|+.+++++|+++..+|+|+ +|+|+
T Consensus 18 ~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~-~g~t~-- 91 (403)
T TIGR01979 18 PLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHR---GIHTLSVRATEAYEAVREKVAKFINAASDEEIVFT-RGTTE-- 91 (403)
T ss_pred ceEEEeCccccCCCHHHHHHHHHHHHhCCCCCCC---CccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEe-CCHHH--
Confidence 4599999999999999999999887654332211 1222 456788999999999999999843478887 56888
Q ss_pred hHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|+++.++ .+++||+|++... .+ +.+. ..|...+++.|...+..+..
T Consensus 92 ---~l~~~~~~~~~~~~~~g~~vl~~~~----~~---~s~~----------------~~~~~~~~~~g~~~~~v~~~--- 142 (403)
T TIGR01979 92 ---SINLVAYSWGDSNLKAGDEIVISEM----EH---HANI----------------VPWQLLAERTGATLKFIPLD--- 142 (403)
T ss_pred ---HHHHHHHHhhhhcCCCCCEEEECcc----hh---hHHH----------------HHHHHHHHhcCcEEEEEecC---
Confidence 677776654 3577888777653 11 1111 12445566677543332210
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
+.-.++.+++ + -.+++++++|+++|.+|.
T Consensus 143 -----------------------------~~~~~~~~~l---------------------~-~~i~~~~~lv~~~~~~~~ 171 (403)
T TIGR01979 143 -----------------------------DDGTLDLDDL---------------------E-KLLTEKTKLVAITHVSNV 171 (403)
T ss_pred -----------------------------CCCCCCHHHH---------------------H-HHhccCCeEEEEEccccc
Confidence 0000111111 0 124678999999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCc--e-
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPT--V- 355 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~--~- 355 (621)
+|+..|+ +++++|+++++|+++++|..|+|+.+++ ++++|.||++||+|+|++++++++++++.+.... .
T Consensus 172 tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~ 251 (403)
T TIGR01979 172 LGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMI 251 (403)
T ss_pred ccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCce
Confidence 9999996 3567899999999999999999998865 9999999999999999999999988776542111 0
Q ss_pred --eec--ccccc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 356 --FHF--KINAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 356 --ld~--~~~~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
.+. ..... .....+||++..++++.++++++.+. |++++.++..++++++++.|++++|+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~-g~~~~~~~~~~l~~~l~~~l~~~~g~~~~ 320 (403)
T TIGR01979 252 AEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAI-GLENIEAHEHELTAYALERLGEIPGLRIY 320 (403)
T ss_pred eecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 000 00000 11223799999999999999999988 89999999999999999999998777664
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=246.37 Aligned_cols=284 Identities=16% Similarity=0.119 Sum_probs=198.4
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
.++||+++|++++|++|++++.+++..+...+. ...|. +....+.++++|+.+++++|++.+ +|+|+ +|+|+
T Consensus 3 ~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~-~g~t~-- 75 (402)
T TIGR02006 3 LPIYLDYAATTPVDPRVAEKMMPYLTEKFGNPA---SRSHSFGWEAEEAVENARNQVAELIGADSR-EIVFT-SGATE-- 75 (402)
T ss_pred ccEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCC---hhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHH--
Confidence 468999999999999999999998855432211 11221 223457899999999999999764 78887 67898
Q ss_pred hHHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|++..++ .+++||+|++... .+.+ +. . ....+++.|...+.++.
T Consensus 76 ---a~~~~l~~l~~~~~~~g~~Vi~~~~----~h~s---~~----------------~-~~~~~~~~g~~v~~v~~---- 124 (402)
T TIGR02006 76 ---SNNLAIKGIAHFYKSKGNHIITSKT----EHKA---VL----------------D-TCRYLEREGFEVTYLPP---- 124 (402)
T ss_pred ---HHHHHHHHHHHhhcCCCCEEEECCC----ccHH---HH----------------H-HHHHHHhcCCEEEEEcc----
Confidence 555544333 2356777766643 2211 11 1 11233455654332221
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
++...++++++ + -.+++++++|+++|.+|.
T Consensus 125 ----------------------------~~~~~~d~~~l---------------------~-~~l~~~~~lv~v~~~~n~ 154 (402)
T TIGR02006 125 ----------------------------KSNGLIDLEEL---------------------K-AAIRDDTILVSIMHVNNE 154 (402)
T ss_pred ----------------------------CCCCcCCHHHH---------------------H-HhcCCCCEEEEEECCCcC
Confidence 00101122221 0 124567899999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeec
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHF 358 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~ 358 (621)
+|+..|+ +++++|+++++|++|++|+.|+|+++++ ++++|+||++||+|+|+++++++...++.+.. ..
T Consensus 155 tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~----~g 230 (402)
T TIGR02006 155 IGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALI----HG 230 (402)
T ss_pred ceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCceEEEEEccCCCCCCCcee----cC
Confidence 9999996 4567899999999999999999999875 99999999999999999999988765543321 11
Q ss_pred cccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCC
Q psy8733 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 359 ~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
.. ...+...+|||+..++++.++++++.+ +++.+.++.+++++++++.|++++++.+.. ++..|.|.
T Consensus 231 ~~-~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~-~~~~~~p~ 297 (402)
T TIGR02006 231 GG-HERGMRSGTLPTHQIVGMGEAFRIAKE--EMAQDTAHVLALRDRLLNGIKSIEEVYLNG-DLEHRVPG 297 (402)
T ss_pred CC-ccCCccCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCCEEEeC-CccccCCC
Confidence 11 122345689999999999999999975 699999999999999999999888765543 23445554
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=246.75 Aligned_cols=281 Identities=14% Similarity=0.052 Sum_probs=195.6
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+||+++|.+++|++|++++.+++.++..+..+. +..+......++++++.+.+.+++.+..+|+|+ +|+|+
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t-~g~te----- 71 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNSL---HQFGTATHPAIAEALDKLYKGINARDLDDIIIT-SCATE----- 71 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhcCcCCccc---cHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEe-CCHHH-----
Confidence 599999999999999999999987754433332 122334567899999999999998434489987 56898
Q ss_pred HHHHhhhccCC----CC-CceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccc
Q psy8733 132 AMNLISSSMNV----PN-NYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 132 alNlla~~~~~----~~-gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
++|++..++.+ ++ +|+|+++.. .+ +. +..-| ..++++|...+.++..
T Consensus 72 al~~~~~~~~~~~~~~~~~~~vi~~~~----e~---ps----------------~~~~~-~~~~~~G~~v~~v~~~---- 123 (382)
T TIGR03403 72 SNNWVLKGVYFDEILKGGKNHIITTEV----EH---PA----------------VRATC-AFLESLGVEVTYLPIN---- 123 (382)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEcCC----cc---HH----------------HHHHH-HHHHHCCCEEEEEecC----
Confidence 67776554321 22 345555432 11 11 11212 3445667543322210
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
+...++.+.+ + -.+++++++|.++|.+|.|
T Consensus 124 ----------------------------~~g~~d~~~l---------------------~-~~i~~~t~lv~~~~~~n~t 153 (382)
T TIGR03403 124 ----------------------------EQGTITAEQV---------------------R-EAITEKTALVSVMWANNET 153 (382)
T ss_pred ----------------------------CCCCCCHHHH---------------------H-HhcccCCeEEEEEcccCCC
Confidence 0000111111 0 1346678999999999999
Q ss_pred cccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecc
Q psy8733 287 GVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFK 359 (621)
Q Consensus 287 Gv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~ 359 (621)
|+.+|+ +++++|+++++|++|++|+.|+|+.+++ ++++|+||++||+|+|++++|++. .+ .|.+.. .
T Consensus 154 G~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~vr~~~--~~---~p~~~g-~ 227 (382)
T TIGR03403 154 GMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGV--EL---TPLFHG-G 227 (382)
T ss_pred ccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCceEEEEECCCC--CC---CCcccC-C
Confidence 999996 3467899999999999999999999865 999999999999999999999875 12 232111 1
Q ss_pred ccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCC
Q psy8733 360 INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 360 ~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
......+.+|||+.+++++.++++++.+ +++.+.++.++++++++++|.+++|+.+... .+.|++.
T Consensus 228 -~~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~-~~~~~~~ 293 (382)
T TIGR03403 228 -EHMGGRRSGTLNVPYIVAMGEAMRLANE--YLDFEKSHVRRLRDRLEDALLELPDVFVVGD-REHRVPN 293 (382)
T ss_pred -CCCCCcccCCcChHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCCEEEECC-CCCCcCC
Confidence 1122355799999999999999998876 4899999999999999999999887765442 2345553
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=250.47 Aligned_cols=278 Identities=15% Similarity=0.178 Sum_probs=184.9
Q ss_pred CCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCccccccccc--HHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcch
Q psy8733 49 AHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRS--ADYTKINNDTQAALRELLNVPNNYKILFLQGGGTG 126 (621)
Q Consensus 49 ~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs--~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~ 126 (621)
.+.+||++++.+++|+.|.+++.+++..|...+.+ +|.. ..+..+.++.++ + +++|++.+ +|+|+ +|+|+
T Consensus 26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~-~l~g~~~~-~v~~~-~~~t~ 97 (406)
T TIGR01814 26 NAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIR----GHNTGKAPWFTLDESLLK-L-RLVGAKED-EVVVM-NTLTI 97 (406)
T ss_pred CCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhc----cCccCCCChhhhhhhhcc-c-cccCCCCC-cEEEe-CCchH
Confidence 35799998888899999999999988777643321 1211 123344444444 5 89999754 79987 56888
Q ss_pred hhhHHHHHHhhhccCCCCC---ceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccc
Q psy8733 127 MFAAVAMNLISSSMNVPNN---YKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVS 203 (621)
Q Consensus 127 ~~~a~alNlla~~~~~~~g---d~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~ 203 (621)
++|+++.++ ++++ ++|++... .|.+ ++ ..|...+++.|...+...
T Consensus 98 -----~l~~~~~~~-~~~~~~~~~i~~~~~----~~~s---~~----------------~~~~~~~~~~g~~~~~~~--- 145 (406)
T TIGR01814 98 -----NLHLLLASF-YKPTPKRYKILLEAK----AFPS---DH----------------YAIESQLQLHGLTVEESM--- 145 (406)
T ss_pred -----HHHHHHHHh-cCCcCCccEEEecCC----CCCh---HH----------------HHHHHHHHhcCCCcccce---
Confidence 677766554 3332 24444432 2221 11 113334566675321000
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc-CCCCCceEEEEecc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW-NRDPEASYLYYCDN 282 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l-~i~~~t~~V~~thn 282 (621)
.+ +...+...++++.+ .+.+ +.++++++|+++|+
T Consensus 146 -----------------~~--------~~~~~~g~~~~~~l--------------------~~~~~~~~~~t~lv~~~~v 180 (406)
T TIGR01814 146 -----------------VQ--------IEPREEETLRLEDI--------------------LDTIEKNGDDIAVILLSGV 180 (406)
T ss_pred -----------------EE--------eccCCCCccCHHHH--------------------HHHHHhcCCCeEEEEEecc
Confidence 00 00000000111111 0111 23578999999999
Q ss_pred cccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCCc
Q psy8733 283 ETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITPT 354 (621)
Q Consensus 283 ET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~ 354 (621)
++.+|+.+|+ +++++|++++||++|++|+.|+|++++| ++++|+|||+ ||+| |+++++++.++++.|..+.
T Consensus 181 ~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~g 259 (406)
T TIGR01814 181 QYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRLAG 259 (406)
T ss_pred ccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCCCc
Confidence 9999999997 4568899999999999999999999875 9999999999 5889 8899888776555553332
Q ss_pred eeec------c-----ccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 355 VFHF------K-----INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 355 ~ld~------~-----~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.. . ...+.+.+.+|||+.+++++.+||+++.+. |++++.++..++++++++.|.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~~l~~~l~~~ 328 (406)
T TIGR01814 260 WWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQA-GMEALRKKSLLLTDYLEELIKAR 328 (406)
T ss_pred ccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHhh
Confidence 2110 0 011223456899999999999999999998 89999999999999999999875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=242.08 Aligned_cols=279 Identities=14% Similarity=0.134 Sum_probs=200.7
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
++||+++|++++|++|++++.+++..+.....+ .++.+..+.++++++|+.+++++|++++ +|+|+ +|+|+
T Consensus 18 ~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~ia~~~~~~~~-~v~~~-~~~t~---- 88 (397)
T TIGR01976 18 RVFFDNPAGTQIPQSVADAVSAALTRSNANRGG---AYESSRRADQVVDDAREAVADLLNADPP-EVVFG-ANATS---- 88 (397)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcCCCCCC---CchHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEe-CCHHH----
Confidence 599999999999999999999998665321111 2344556778999999999999999765 68876 67888
Q ss_pred HHHHHhhhcc--CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHH--HHHHHHHHHhCCceeeeccccccc
Q psy8733 131 VAMNLISSSM--NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWS--KKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 131 ~alNlla~~~--~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~--~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
++|++...+ .+++||+|++.. .++++ ..|...+++.|...+..+..
T Consensus 89 -~l~~~~~~~~~~~~~gd~vl~~~-------------------------~~~~s~~~~~~~~~~~~g~~~~~~~~~---- 138 (397)
T TIGR01976 89 -LTFLLSRAISRRWGPGDEVIVTR-------------------------LDHEANISPWLQAAERAGAKVKWARVD---- 138 (397)
T ss_pred -HHHHHHHHHHhcCCCCCEEEEcC-------------------------CchHhHHHHHHHHHHhcCCEEEEEecc----
Confidence 566544333 245566555543 33333 23556677778653332210
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
+. .| .++++.+ + -.+++++++|.++|.+|.+
T Consensus 139 -------~~------------------~~--~~~~~~l---------------------~-~~i~~~~~lv~i~~~~n~t 169 (397)
T TIGR01976 139 -------EA------------------TG--ELHPDDL---------------------A-SLLSPRTRLVAVTAASNTL 169 (397)
T ss_pred -------cc------------------CC--CcCHHHH---------------------H-HhcCCCceEEEEeCCCCCC
Confidence 00 00 0111111 0 1245689999999999999
Q ss_pred cccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecc
Q psy8733 287 GVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFK 359 (621)
Q Consensus 287 Gv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~ 359 (621)
|...|+ +++++|+++++|+++++|..++|+.+++ ++++|+|||+||+ +|++++++++++++.+....+ .+.
T Consensus 170 G~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~l~~~~~~~~~l~~~~~~~-~~~ 247 (397)
T TIGR01976 170 GSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTF-SYD 247 (397)
T ss_pred CccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCCc-eEEEEEcHHHHhhCCCccccC-ccC
Confidence 999996 4567899999999999999999998876 8889999999975 899999999988876543222 122
Q ss_pred ccccCCCccCCchHHHHHHHHHHHHHHHhhC-------------CHHHHHHHHHHHHHHHHHHHHccCCcccCc
Q psy8733 360 INADNNSVYNTPPTFVVHVIQRVFAWIKRQG-------------GLAKMEQNSLQKSVLLYQEIDNSDKFYECP 420 (621)
Q Consensus 360 ~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~g-------------Gl~~i~~r~~~la~~L~e~L~~~~g~~~~~ 420 (621)
.... ....+|||+..++++.+|++++.+.| +++.+.+|+.++++++++.|.+++++.+..
T Consensus 248 ~~~~-~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 320 (397)
T TIGR01976 248 TGPE-RFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYG 320 (397)
T ss_pred CCcc-hhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 2111 23348999999999999999998884 278889999999999999999887666543
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=239.77 Aligned_cols=265 Identities=15% Similarity=0.118 Sum_probs=186.9
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+||+++|.+++|++|++++.+++.++.+...+. +..+..+.++++++|+.+++++|++++ +|+|+ +|+|++
T Consensus 2 ~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~~-~g~t~a---- 72 (381)
T PRK02948 2 IYLDYAATTPMSKEALQTYQKAASQYFGNESSL---HDIGGTASSLLQVCRKTFAEMIGGEEQ-GIYFT-SGGTES---- 72 (381)
T ss_pred EeccCCCCCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CcHHHH----
Confidence 699999999999999999999887654433332 223456788999999999999998654 78886 678883
Q ss_pred HHHHhhhcc-C--CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHH-HHHHHHHHHhCCceeeecccccccc
Q psy8733 132 AMNLISSSM-N--VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWS-KKAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 132 alNlla~~~-~--~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~-~~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
++++...+ . .++||+|++... .+.+ ..+...+++.|......+..
T Consensus 73 -~~~~~~~~~~~~~~~g~~vv~~~~-------------------------~h~s~~~~~~~~~~~g~~v~~v~~~----- 121 (381)
T PRK02948 73 -NYLAIQSLLNALPQNKKHIITTPM-------------------------EHASIHSYFQSLESQGYTVTEIPVD----- 121 (381)
T ss_pred -HHHHHHHHHHhccCCCCEEEECCc-------------------------ccHHHHHHHHHHHhCCCEEEEEeeC-----
Confidence 43322211 1 234555554432 1111 11223456667543322210
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
+...++++.+ +. .+.+++++|+++|.+|.||
T Consensus 122 ---------------------------~~~~~d~~~l---------------------~~-~l~~~~~lv~~~~~~n~tG 152 (381)
T PRK02948 122 ---------------------------KSGLIRLVDL---------------------ER-AITPDTVLASIQHANSEIG 152 (381)
T ss_pred ---------------------------CCCCCCHHHH---------------------HH-hcCCCCEEEEEECCcCCcE
Confidence 0001111111 11 2456789999999999999
Q ss_pred ccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccc
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKI 360 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~ 360 (621)
...|+ +++++|+++++|++|++|..|+|+++++ ++++|+||++||+|+|++++++++. +.+..+. .
T Consensus 153 ~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~--~~~~~~~-----~ 225 (381)
T PRK02948 153 TIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQVR--WKPVFPG-----T 225 (381)
T ss_pred eehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCcEEEEEEcCCCC--CCCcccC-----C
Confidence 99996 4567899999999999999999999886 9999999999999999999998751 1111110 1
Q ss_pred cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 361 NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 361 ~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
....+..++|||+++++++.++++++.+ +++++.++.+++++++++.|.+++
T Consensus 226 ~~~~~~~~~t~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~ 277 (381)
T PRK02948 226 THEKGFRPGTVNVPGIAAFLTAAENILK--NMQEESLRFKELRSYFLEQIQTLP 277 (381)
T ss_pred CCCCCcCCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1123456789999999999999999875 489999999999999999999875
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=244.81 Aligned_cols=274 Identities=18% Similarity=0.159 Sum_probs=201.8
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+.+|+++..++|+|+.|+++|..++..+.+++.+ . -.+-+..+.+++||+.+++|+|+.+. +|+|+ +|||+
T Consensus 43 ~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~---~-~y~w~~~~~~E~aR~~VAklInAd~~-dIiFt-s~ATE--- 113 (428)
T KOG1549|consen 43 RPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHS---R-SYGWKAEDAVEAAREQVAKLINADPS-DIVFT-SGATE--- 113 (428)
T ss_pred ccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCc---c-ccchhhhHHHHHHHHHHHHHhCCCCC-cEEEe-CCchH---
Confidence 5799999999999999999999999988876533 2 11345667799999999999999776 59997 77999
Q ss_pred HHHHHHhhhccCCCCCc----eeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 130 AVAMNLISSSMNVPNNY----KILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 130 a~alNlla~~~~~~~gd----~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|++..++.|..+| .|+.++. +. .+.. + +.+..+..|.
T Consensus 114 --s~Nlvl~~v~~~~~~~~~k~iitl~~----eH----~~v~-------------~---s~~~l~~~g~----------- 156 (428)
T KOG1549|consen 114 --SNNLVLKGVARFFGDKTKKHIITLQT----EH----PCVL-------------D---SCRALQEEGL----------- 156 (428)
T ss_pred --HHHHHHHHhhccccccccceEEEecc----cC----cchh-------------H---HHHHHHhcCe-----------
Confidence 899999999998888 8888864 21 1111 1 2333444453
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEeccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNE 283 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnE 283 (621)
++.|++..+ + .+.+.+.+ .++++|++|.+-|+.
T Consensus 157 -------------~Vt~lpv~~-----------------------------~---~~~d~~~~~~~i~~~T~lv~I~~Vn 191 (428)
T KOG1549|consen 157 -------------EVTYLPVED-----------------------------S---GLVDISKLREAIRSKTRLVSIMHVN 191 (428)
T ss_pred -------------EEEEeccCc-----------------------------c---ccccHHHHHHhcCCCceEEEEEecc
Confidence 233332110 0 12223333 478999999999999
Q ss_pred ccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCcee
Q psy8733 284 TVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVF 356 (621)
Q Consensus 284 T~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~l 356 (621)
+-.|+.+|+ +++.+++.+++||+|++|+.||||++++ ++++++|||+||+|+|++|+|++. .++ +..|.+.
T Consensus 192 n~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~iGaLYvr~~~-~~~-~~~p~~~ 269 (428)
T KOG1549|consen 192 NEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKR-PRL-RVEPPLS 269 (428)
T ss_pred cCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCcceEEEEccCC-Ccc-cccCccc
Confidence 999999996 4678899999999999999999999997 999999999999999999999822 111 1123332
Q ss_pred eccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc-cCCcccCc
Q psy8733 357 HFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN-SDKFYECP 420 (621)
Q Consensus 357 d~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~-~~g~~~~~ 420 (621)
.. .++.+.+.+|+++..+.+++.|+++..++ .+.++++.+++...+...+.. .++.++..
T Consensus 270 -GG-gq~r~~rsGT~~~~~~~~~gsA~e~~~~~--~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G 330 (428)
T KOG1549|consen 270 -GG-GQERGLRSGTVATPLAVGLGSAAEFVNKE--MAYDEAIIKRLSEKLLMGIGQSLPEVTLNG 330 (428)
T ss_pred -CC-ccccccccCCcCchhhhhhHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhhhCchhhccC
Confidence 22 24456788999999999999999999886 344555555566666666543 44444443
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-25 Score=235.25 Aligned_cols=280 Identities=18% Similarity=0.201 Sum_probs=201.1
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+||+++|.+++|+.|++++++++.++.....+ ..+++++.+.+.++++|+.+++++++++..+|+|+ +|+|+
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~g~t~----- 72 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHR--GVHELSARATDAYEAAREKVARFINAPSPDEIIFT-RNTTE----- 72 (373)
T ss_pred CcccCccccCCCHHHHHHHHHHHHhcCCCCCC--CccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEe-CCHHH-----
Confidence 48999999999999999999998776542111 14566788999999999999999999844478776 67898
Q ss_pred HHHHhhhccCCC--CCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH--HHHHHHHHhCCceeeecccccccc
Q psy8733 132 AMNLISSSMNVP--NNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK--KAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 132 alNlla~~~~~~--~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~--~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
++|++..++..+ +||+|++.. .++.+. .+...++..|...+..+.
T Consensus 73 a~~~~~~~l~~~~~~g~~vl~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~~v~~------ 121 (373)
T cd06453 73 AINLVAYGLGRANKPGDEIVTSV-------------------------MEHHSNIVPWQQLAERTGAKLKVVPV------ 121 (373)
T ss_pred HHHHHHHHhhhcCCCCCEEEECc-------------------------chhHHHHHHHHHHHhhcCcEEEEeec------
Confidence 566655444332 556655543 222221 234455566654332221
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
++...+++|.+ ++ .+++++++|+++|.+|.+|
T Consensus 122 --------------------------~~~~~~d~~~l---------------------~~-~l~~~~~~v~~~~~~~~tG 153 (373)
T cd06453 122 --------------------------DDDGQLDLEAL---------------------EK-LLTERTKLVAVTHVSNVLG 153 (373)
T ss_pred --------------------------CCCCCcCHHHH---------------------HH-HhcCCceEEEEeCcccccC
Confidence 01111222221 11 2456899999999999999
Q ss_pred ccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCce-----
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTV----- 355 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~----- 355 (621)
...|+ +++++|+++++|+++++|..|+++.+++ ++++|+||++|++|+|++++++++++++.+.....
T Consensus 154 ~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~ 233 (373)
T cd06453 154 TINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEE 233 (373)
T ss_pred CcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCcccc
Confidence 99996 4568999999999999999999998765 88999999998899999999999988776532110
Q ss_pred --eeccccccCC--CccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 356 --FHFKINADNN--SVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 356 --ld~~~~~~~~--s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
++........ ...+|||+..++++..+++++.++ |++++.++.+++++++++.|++++|+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~-g~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 300 (373)
T cd06453 234 VSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKI-GMEAIAAHEHELTAYALERLSEIPGVRVY 300 (373)
T ss_pred ccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 0111111111 123699999999999999999988 89999999999999999999998766544
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-27 Score=251.41 Aligned_cols=110 Identities=35% Similarity=0.680 Sum_probs=105.2
Q ss_pred hhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhc-CChHHH
Q psy8733 447 FFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ-GGLAKM 525 (621)
Q Consensus 447 ~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~-gg~~~~ 525 (621)
.+||++|+|+||||||+|||+||+|++++++..+.+|.+++|+.+++++|+|||||||.||+++++|+||+++ ||++++
T Consensus 187 ~~~dvi~agsQKnlgP~Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~ 266 (364)
T PRK12462 187 EAYGMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAM 266 (364)
T ss_pred HHccEEEeeccccCCCCceEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3579999999999999999999999999999988899999999999999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHHHHHhccCCcccccCCCCCc
Q psy8733 526 EQNSLQKSVLLYQEIDNSDKFYECPVQAGFP 556 (621)
Q Consensus 526 ~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~ 556 (621)
++|+++||++||++||++++||.++|+++++
T Consensus 267 ~~r~~~ka~~ly~~id~~~~~~~~~~~~~~R 297 (364)
T PRK12462 267 RDINARKAAMLYATLDALNEVIDCHAHRAAR 297 (364)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCCCChhhc
Confidence 9999999999999999999999999987643
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=232.71 Aligned_cols=276 Identities=17% Similarity=0.116 Sum_probs=191.3
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCccccccccc-HHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRS-ADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs-~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
.++||+++|++++|++|++++.+++..+...+ +.+...|.. ....+.++++|+.+++++|++.+ +|+|+ +|||+
T Consensus 3 ~~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~-~v~~~-~g~t~-- 77 (404)
T PRK14012 3 LPIYLDYSATTPVDPRVAEKMMPYLTMDGTFG-NPASRSHRFGWQAEEAVDIARNQIADLIGADPR-EIVFT-SGATE-- 77 (404)
T ss_pred ceEEecCcCCCCCCHHHHHHHHHHHHhcccCc-CCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC-eEEEe-CCHHH--
Confidence 36899999999999999999999886221111 111111211 12347899999999999999754 68887 67898
Q ss_pred hHHHHHHhhhccC---CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSMN---VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~~---~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
++|++..++. +++||+|++... .|.+ +. ..| ..+++.|...+..+.
T Consensus 78 ---al~~~l~~l~~~~~~~gd~Vi~~~~----~~~s---~~----------------~~~-~~~~~~g~~~~~v~~---- 126 (404)
T PRK14012 78 ---SDNLAIKGAAHFYQKKGKHIITSKT----EHKA---VL----------------DTC-RQLEREGFEVTYLDP---- 126 (404)
T ss_pred ---HHHHHHHHHHHhhcCCCCEEEEecC----ccHH---HH----------------HHH-HHHHhCCCEEEEEcc----
Confidence 6666554432 467787777653 2221 11 111 122345653322211
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
++.-.++++++ +-.+++++++|+++|..+.
T Consensus 127 ----------------------------~~~g~~d~~~l----------------------~~~i~~~t~lv~~~~~~n~ 156 (404)
T PRK14012 127 ----------------------------QSNGIIDLEKL----------------------EAAMRDDTILVSIMHVNNE 156 (404)
T ss_pred ----------------------------CCCCcCCHHHH----------------------HHhcCCCCEEEEEECcCCC
Confidence 00001112221 1135678999999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeec
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHF 358 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~ 358 (621)
+|+..|+ +++++|+++++|++|++|+.|+|+.+++ ++++|+||.+||.|+|+++++++...++. |.+...
T Consensus 157 tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~---~~~~g~ 233 (404)
T PRK14012 157 IGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLE---AQMHGG 233 (404)
T ss_pred ccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCceEEEEEecCCCCCCC---ceecCC
Confidence 9999996 4568899999999999999999998764 99999999889999999999998654332 222111
Q ss_pred cccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 359 ~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
. .......+|+++..+.+++++++++.. +++.+.++.+++++++++.|.+++++..
T Consensus 234 ~--~~~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~i~~ 289 (404)
T PRK14012 234 G--HERGMRSGTLPTHQIVGMGEAARIAKE--EMATENERIRALRDRLWNGIKDIEEVYL 289 (404)
T ss_pred C--ccCCccCCCcCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 1 112244689999999999999999865 5888999999999999999998876653
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=226.74 Aligned_cols=282 Identities=14% Similarity=0.091 Sum_probs=192.6
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCccccccc-ccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSH-RSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~sh-rs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
||++++.+++|++|++++.+++.+....+.+ ..| .+..+.+.++++|+.+++++|++.+ +|+|+ +|+|+
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~-~g~t~----- 70 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSS---RTHEFGHNAKKAVERARKQVAEALGADTE-EVIFT-SGATE----- 70 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCc---hhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHH-----
Confidence 7899999999999999999988653322111 111 1334668899999999999999754 78887 66888
Q ss_pred HHHHhhhcc---CCCCC-ceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccc
Q psy8733 132 AMNLISSSM---NVPNN-YKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 132 alNlla~~~---~~~~g-d~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
++|++...+ +.++| |+|++... .+ + .+...| ..+++.|...+..+
T Consensus 71 a~~~~l~~l~~~~~~~g~~~vi~~~~----~~---~----------------s~~~~~-~~~~~~G~~v~~v~------- 119 (353)
T TIGR03235 71 SNNLAILGLARAGEQKGKKHIITSAI----EH---P----------------AVLEPI-RALERNGFTVTYLP------- 119 (353)
T ss_pred HHHHHHHHHHHhcccCCCCeeeEccc----cc---H----------------HHHHHH-HHHHhcCCEEEEEc-------
Confidence 454433222 12334 44444321 11 1 111222 23345565332221
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
.+|...++++++ ++ .+++++++|+++|.+|.+|
T Consensus 120 -------------------------~~~~~~~d~~~l---------------------~~-~l~~~~~lv~~~~~~n~tG 152 (353)
T TIGR03235 120 -------------------------VDESGRIDVDEL---------------------AD-AIRPDTLLVSIMHVNNETG 152 (353)
T ss_pred -------------------------cCCCCcCCHHHH---------------------HH-hCCCCCEEEEEEcccCCce
Confidence 111111222221 11 2456789999999999999
Q ss_pred ccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccc
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKI 360 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~ 360 (621)
+..|+ +++++|+++++|++|++|..++|+++++ ++++|+||++||+|+|+++++++.+... ...|.+++..
T Consensus 153 ~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~-~~~~~~~~~~- 230 (353)
T TIGR03235 153 SIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKA-PLKPIMFGGG- 230 (353)
T ss_pred eccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCceEEEEEccCccccc-ccCceeeCCC-
Confidence 99996 3568899999999999999999999875 9999999999999999999999976432 1234333221
Q ss_pred cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCC
Q psy8733 361 NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 361 ~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
...+...+|||+..++++.++++++. . |++++.++++++++++++.|.+ .|+.+.. ++..|++.
T Consensus 231 -~~~~~~~gt~~~~~~~al~~al~~~~-~-~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~-~~~~~~~~ 294 (353)
T TIGR03235 231 -QERGLRPGTLPVHLIVGMGEAAEIAR-R-NAQAWEVKLRAMRNQLRDALQT-LGVKLNG-DPAETIPH 294 (353)
T ss_pred -CcCccccCCCChHHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHHHhcc-CCeEEeC-CcccccCC
Confidence 12345568999999999999999986 4 7999999999999999999988 5676543 23345543
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >KOG2790|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-25 Score=226.21 Aligned_cols=173 Identities=53% Similarity=0.876 Sum_probs=141.2
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
+|+...|...++..|+|||++|+|+|-..+.+ | ++.....+.+|..+.
T Consensus 137 vPd~~~w~~~~da~yvyyCaNETVHGVEf~~~-----------------------P------~~~~~~~vlVaDmSS--- 184 (370)
T KOG2790|consen 137 VPDPSTWELNPDASYVYYCANETVHGVEFDFI-----------------------P------VNDPKGAVLVADMSS--- 184 (370)
T ss_pred CCChhhcccCCCccEEEEecCceeeceecCCC-----------------------C------CCCCCCceEEEeccc---
Confidence 68889999999999999999999996444322 1 000011222222221
Q ss_pred cccccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCc
Q psy8733 288 VEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSV 367 (621)
Q Consensus 288 v~~p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~ 367 (621)
+.+.+. +|. |-+|. +++|+|||+||+|++++++|++++.+..+.+|+.+||+.+.+++|.
T Consensus 185 ---nflSrp------vDv-sk~gv----------i~aGAQKN~G~aG~Tvvivr~dllg~~~~~tP~v~dyk~~~~NnSl 244 (370)
T KOG2790|consen 185 ---NFLSRP------VDV-SKFGV----------IFAGAQKNVGPAGVTVVIVRKDLLGNALDITPSVLDYKIMDKNNSL 244 (370)
T ss_pred ---chhcCC------ccc-hhcce----------EEeccccccCccccEEEEEehhhhcccccCCccccceeeecccccc
Confidence 112221 121 22333 5799999999999999999999999988889999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCccc
Q psy8733 368 YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVT 432 (621)
Q Consensus 368 ~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~ 432 (621)
|||||+++||.++++++||++.||++++++.+.++++.||+.|+++.|||.+|++|..||+|||+
T Consensus 245 yNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~ 309 (370)
T KOG2790|consen 245 YNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVP 309 (370)
T ss_pred ccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=202.60 Aligned_cols=108 Identities=56% Similarity=0.870 Sum_probs=104.4
Q ss_pred eccccccCCCccEEEEEchhHHhhhCCC-CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q psy8733 324 AGAQKNIGPAGITVVIVREDLLEYALPI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQK 402 (621)
Q Consensus 324 asaqK~lGP~Glg~livr~~ll~~~~~~-~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~l 402 (621)
+|+|||+||.|++++|+|+++++++++. +|++|+|....+++++|||||++.+|.++++++|++++||++++++|++++
T Consensus 196 agaQKnlGpaGltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~k 275 (365)
T COG1932 196 AGAQKNLGPAGLTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAK 275 (365)
T ss_pred EehhhccCccceEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6889999999999999999999999887 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCcccCccCCCCCCCCccc
Q psy8733 403 SVLLYQEIDNSDKFYECPVQAGCRSRMNVT 432 (621)
Q Consensus 403 a~~L~e~L~~~~g~~~~~~~~~~RS~~nv~ 432 (621)
++.||+.+++++ ||.+++.++.||.||||
T Consensus 276 a~~LY~~id~s~-fy~~~v~~~~RS~mnV~ 304 (365)
T COG1932 276 AQLLYDWIDKSD-FYRNLVAKANRSRMNVT 304 (365)
T ss_pred HHHHHHHHHhCC-ccccccchhhccceeEE
Confidence 999999999994 99999999999999998
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=194.40 Aligned_cols=264 Identities=16% Similarity=0.101 Sum_probs=174.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhh
Q psy8733 59 PAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLIS 137 (621)
Q Consensus 59 Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla 137 (621)
-+|+|++|++++.++...+.+. .+ ..|+ .......++++|+.+++++|+++ ++|+ +|+|+++.
T Consensus 29 ~~p~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~l~~~lA~~~g~~~---~~~~-~g~t~a~~-------- 92 (387)
T PRK09331 29 GGILTPEARKALIEYGDGYSVC-DY---CPGRLDQIKKPPIADFHEDLAEFLGMDE---ARVT-HGAREGKF-------- 92 (387)
T ss_pred CCCCCHHHHHHHHHHHhccCCC-cc---cccccccccChHHHHHHHHHHHHhCCCc---EEEe-CCHHHHHH--------
Confidence 4688999999999998544221 11 1333 22234579999999999999963 6776 56888322
Q ss_pred hccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCC
Q psy8733 138 SSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD 217 (621)
Q Consensus 138 ~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 217 (621)
+++.+++.+|+++.+..+++++... .++..|...+..+..
T Consensus 93 -----------------------~al~~l~~~gd~Vlv~~~~h~s~~~--~~~~~G~~~~~v~~~--------------- 132 (387)
T PRK09331 93 -----------------------AVMHSLCKKGDYVVLDGLAHYTSYV--AAERAGLNVREVPKT--------------- 132 (387)
T ss_pred -----------------------HHHHHhcCCCCEEEECCCchHHHHH--HHHHcCCEEEEEeCc---------------
Confidence 3445556667776666666776533 356667643332210
Q ss_pred CCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccC-----CCCCceEEEEecccccccccccc
Q psy8733 218 PEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWN-----RDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 218 ~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~-----i~~~t~~V~~thnET~tGv~~p~ 292 (621)
.+|...++++.++ +.+. ..+++++|+++|.++.+|...|+
T Consensus 133 ---------------~~~~~~~d~~~l~--------------------~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l 177 (387)
T PRK09331 133 ---------------GYPEYKITPEAYA--------------------EKIEEVKEETGKPPALALLTHVDGNYGNLADA 177 (387)
T ss_pred ---------------cCcCCCcCHHHHH--------------------HHHHHhhhccCCCCEEEEEECCCCCCcccccH
Confidence 0111112333320 0111 12478999999999999999996
Q ss_pred -----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCCCCceeeccccccC
Q psy8733 293 -----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADN 364 (621)
Q Consensus 293 -----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~ 364 (621)
+++++|+++++|+++++|..|++..+++ ++++|+||++| |+|+|++++++++++++....+.|. ... .
T Consensus 178 ~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~-~~~-~-- 253 (387)
T PRK09331 178 KKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFG-VKE-V-- 253 (387)
T ss_pred HHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCc-ccc-e--
Confidence 4568899999999999999999999885 99999999995 8999999999999887654333221 110 0
Q ss_pred CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCc
Q psy8733 365 NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP 420 (621)
Q Consensus 365 ~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~ 420 (621)
.....|++...++++.++++++.+. + ...+++.++++++++.|.+++|+.+..
T Consensus 254 ~~~~~~~~~~~~~~~~aal~~~~~~--~-~~~~~~~~~~~~l~~~L~~l~g~~~~~ 306 (387)
T PRK09331 254 ELLGCTLRGAPLVTLMASFPHVVER--V-KRWDEEVKKARWFVDELEKIEGFKQLG 306 (387)
T ss_pred eeeceecCchHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence 0011233334455566677776654 3 345666778889999999997776654
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-20 Score=201.94 Aligned_cols=106 Identities=51% Similarity=0.893 Sum_probs=101.0
Q ss_pred hhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 447 FFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 447 ~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
.++|++|+|+|||+||+|++++|+|++++++..+..|.+++|+.+.+|+|+|||||++.||.++++|+||+++||+++++
T Consensus 189 ~~~~v~~~saqK~lGP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~ 268 (365)
T PLN02452 189 SKYGVIYAGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAME 268 (365)
T ss_pred HHcCEEEEecccccCCCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHH
Confidence 35788999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCcccccCC
Q psy8733 527 QNSLQKSVLLYQEIDNSDKFYECPVQ 552 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~~~~~~~v~ 552 (621)
+|+++|++.||+.|+++++||.++++
T Consensus 269 ~r~~~~a~~l~~~l~~~~G~y~~~~~ 294 (365)
T PLN02452 269 KRNIRKADLLYDAIDESNGFYVCPVE 294 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 99999999999999999999888764
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=191.06 Aligned_cols=276 Identities=12% Similarity=0.058 Sum_probs=175.5
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhc--cCCCcccccccccHHHHHHHHH-HHHHHHHHhCCCCCCEEEEEc--CCc
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYE--STGISVMEMSHRSADYTKINND-TQAALRELLNVPNNYKILFLQ--GGG 124 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~--~~g~sv~e~shrs~~f~~i~~~-ar~~La~Ll~~p~~yeI~f~~--ggg 124 (621)
+...++.|+-..+++.|++++...+.+.. +.+.| .++.+.++.+.+++ +|+.++++||++.+ ++.|.. .||
T Consensus 34 ~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s---~~~~g~~~~~~iE~~ar~~~a~lf~a~~~-~~~~~~~~~sg 109 (452)
T PTZ00094 34 IEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGN---RYYGGNEVVDKIENLCQKRALEAFGLDPE-EWGVNVQPYSG 109 (452)
T ss_pred HcCeeEecccccCCHHHHHHhcchhhccccCCCCCc---cccccchHHHHHHHHHHHHHHHHhCCCcc-cceeecCCCch
Confidence 45789999999999999999999997755 33333 23335567788885 99999999999754 555542 567
Q ss_pred chhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHH-hCCceeeecccc
Q psy8733 125 TGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEK-YGKVNLVIPKVS 203 (621)
Q Consensus 125 T~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~-~G~~~~~~~~~~ 203 (621)
|. +.+++..++ +++||+|++.. ++. ..++ .. | ...+++ .+....
T Consensus 110 t~-----an~~v~~al-~~~gd~Ii~~~------~eh-g~~l----------~~--~----~~l~~~~~~~~~~------ 154 (452)
T PTZ00094 110 SP-----ANFAVYTAL-LQPHDRIMGLD------LPS-GGHL----------TH--G----FYTAKKKVSATSI------ 154 (452)
T ss_pred HH-----HHHHHHHHh-cCCCCEEEecc------ccc-CCcc----------cc--c----cccccccccccee------
Confidence 77 444445555 67888888763 221 1111 00 1 100000 000000
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNE 283 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnE 283 (621)
.+++.+.. ++. . ..++.+++ +......++++|.+++
T Consensus 155 -------------~~~~~~~~------~~~-~-g~id~~~L---------------------~~~l~~~~~~lvi~~~-- 190 (452)
T PTZ00094 155 -------------YFESLPYQ------VNE-K-GLIDYDKL---------------------EELAKAFRPKLIIAGA-- 190 (452)
T ss_pred -------------eeeeeecc------cCC-C-CCcCHHHH---------------------HHHHHHhCCCEEEEeC--
Confidence 00000000 000 0 01222221 1110112456666554
Q ss_pred ccccccccc-----ccccCCCcEEEecccccCCCcccc-----cccceEEecccccc-CCCccEEEEEchhHHhhhCCCC
Q psy8733 284 TVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDV-----SKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT 352 (621)
Q Consensus 284 T~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv-----~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~ 352 (621)
+.+|..+|+ +++++|++++||++|++|..++|+ +..|++++|+|||| ||.| |++++++++.+.+.+..
T Consensus 191 s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l~~~~ 269 (452)
T PTZ00094 191 SAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPDIENKI 269 (452)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEecccchHHHHhh
Confidence 357999996 456889999999999999997765 33579999999999 7999 88888887654332211
Q ss_pred CceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 353 PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 353 P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
... ......++|+...++++.++++++.+. +.+.+.++..+++++|.+.|.+. |+.+
T Consensus 270 ~~~-------~~p~~~G~~~~~~iaal~~al~~~~~~-~~~~~~~~i~~l~~~l~~~L~~~-g~~v 326 (452)
T PTZ00094 270 NEA-------VFPGLQGGPHNHQIAAIAVQLKEVQSP-EWKEYAKQVLKNAKALAAALEKR-GYDL 326 (452)
T ss_pred ccc-------cCCCCCCCchHHHHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHhC-CcEE
Confidence 000 001234789999999999999999887 78999999999999999999875 4543
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=177.50 Aligned_cols=266 Identities=14% Similarity=0.109 Sum_probs=169.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhh
Q psy8733 59 PAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLIS 137 (621)
Q Consensus 59 Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla 137 (621)
|.++.+++++++.++...+.+.. + .+|+ +......+.+.++.+++++|+ + +++++ +|+|++ +++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~la~~~g~-~--~i~~~-~g~t~a-----l~~-- 74 (361)
T cd06452 10 GGRLTPEARKALIEWGDGYSVCD-F---CRGRLDEIEKPPIKDFHHDLAEFLGM-D--EARVT-PGAREG-----KFA-- 74 (361)
T ss_pred CCCCCHHHHHHHHHHhcccCCcc-c---cccccccccCchHHHHHHHHHHHcCC-c--eEEEe-CCHHHH-----HHH--
Confidence 45678889999888864332211 1 1232 222345788999999999999 3 68876 568883 322
Q ss_pred hccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCC
Q psy8733 138 SSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD 217 (621)
Q Consensus 138 ~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 217 (621)
++.+++.+|+++.+...++++.. ..++.+|...+..+.. +
T Consensus 75 ------------------------~l~~~~~~gd~Vl~~~~~~~~~~--~~~~~~g~~~~~v~~~-----------~--- 114 (361)
T cd06452 75 ------------------------VMHSLCEKGDWVVVDGLAHYTSY--VAAERAGLNVREVPNT-----------G--- 114 (361)
T ss_pred ------------------------HHHHhcCCCCEEEEcCCcchHHH--HHHHhcCCEEEEEecC-----------C---
Confidence 34445566666666556666653 2466677643332210 0
Q ss_pred CCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEecccccccccccc---
Q psy8733 218 PEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNETVDGVEFNY--- 292 (621)
Q Consensus 218 ~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnET~tGv~~p~--- 292 (621)
++.| .+++|.++. .+ +.. ...+++++|+++|.++.+|...|+
T Consensus 115 --------------~~~~--~~d~~~l~~--------------~l---~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i 161 (361)
T cd06452 115 --------------HPEY--HITPEGYAE--------------VI---EEVKDEFGKPPALALLTHVDGNYGNLHDAKKI 161 (361)
T ss_pred --------------CCCc--ccCHHHHHH--------------HH---HHHhhccCCCceEEEEECCCCCCeeeccHHHH
Confidence 0001 122222100 00 000 001478999999999999999885
Q ss_pred --ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCCCCceeeccccccCCCc
Q psy8733 293 --IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSV 367 (621)
Q Consensus 293 --i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~ 367 (621)
+++++|+++++|+++++|..|++..+++ +++.|.||+++ |.|+|++++++++++++...... ++... ....
T Consensus 162 ~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~-~~~~~---~~~~ 237 (361)
T cd06452 162 AKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQM-FKIKE---VELL 237 (361)
T ss_pred HHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccc-cccce---eeee
Confidence 3567899999999999999999988876 99999999996 77899999999999887543321 22211 1112
Q ss_pred cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 368 YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 368 ~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
..|++...++++.++++++.+. ++. .++..++++++++.|.+++|+.+.
T Consensus 238 ~~~~~~~~~~~~~~al~~~~~~--~~~-~~~~~~~~~~l~~~L~~l~g~~v~ 286 (361)
T cd06452 238 GCTLRGAPLVTLMASFPHVKER--VKR-WDEEVEKARWFVAELEKIEGIKQL 286 (361)
T ss_pred ccccCchHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHhcCCCeEEE
Confidence 2455556677777777776553 433 444456678999999998777654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-17 Score=175.77 Aligned_cols=265 Identities=17% Similarity=0.094 Sum_probs=171.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHH
Q psy8733 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMN 134 (621)
Q Consensus 55 f~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alN 134 (621)
|+...++..+.+++++.+++....+. + ..+ +...++.+++++.+++++|+++. .++|+ +|||+++.+ ++.
T Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~~~--~---~~~--~~~~~~~~~~~~~la~~~g~~~~-~~~~~-~ggt~a~~~-a~~ 94 (371)
T PRK13520 25 LSSMCTEPHPIARKAHEMFLETNLGD--P---GLF--PGTAKLEEEAVEMLGELLHLPDA-YGYIT-SGGTEANIQ-AVR 94 (371)
T ss_pred eeeeecCchHHHHHHHHHHHhcCCCC--c---ccC--ccHHHHHHHHHHHHHHHhCCCCC-CeEEe-cCcHHHHHH-HHH
Confidence 66677888888899999887542221 1 111 23567788999999999999865 46665 678884332 111
Q ss_pred HhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCC
Q psy8733 135 LISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW 214 (621)
Q Consensus 135 lla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~ 214 (621)
.+ ....++++ +++.+...++++ |.+.++++|......+.
T Consensus 95 ~~-~~~~~~~~-------------------------~~vl~~~~~h~s--~~~~~~~~g~~~~~v~~------------- 133 (371)
T PRK13520 95 AA-RNLAKAEK-------------------------PNIVVPESAHFS--FDKAADMLGVELRRAPL------------- 133 (371)
T ss_pred HH-HhhccCCC-------------------------ceEEecCcchHH--HHHHHHHcCceEEEecC-------------
Confidence 10 01112233 344444445554 45566777754332221
Q ss_pred CCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc--
Q psy8733 215 NRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-- 292 (621)
Q Consensus 215 ~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-- 292 (621)
+|...+++|++ + -.+++++++|.+++++|.+|...|+
T Consensus 134 -------------------~~~~~~d~~~l---------------------~-~~i~~~~~~vi~~~~~~~tG~~~~l~~ 172 (371)
T PRK13520 134 -------------------DDDYRVDVKAV---------------------E-DLIDDNTIGIVGIAGTTELGQVDPIPE 172 (371)
T ss_pred -------------------CCCCcCCHHHH---------------------H-HHHhhCCEEEEEEcCCcCCcccCCHHH
Confidence 11111222221 0 1245668888899999999999996
Q ss_pred ---ccccCCCcEEEecccccCCCc-------cccccc--ceEEeccccccC-CCccEEEEEchh-HHhhhCCCCCceeec
Q psy8733 293 ---IPDSQGIPLVSDMSSNFLSRK-------FDVSKF--GVIIAGAQKNIG-PAGITVVIVRED-LLEYALPITPTVFHF 358 (621)
Q Consensus 293 ---i~~~~g~llvvDavSs~G~~p-------IDv~~~--gvl~asaqK~lG-P~Glg~livr~~-ll~~~~~~~P~~ld~ 358 (621)
+++++|++++||++++.+..| +|+..+ +++.+++|||++ |.|.|.++++++ +++.+....| |+..
T Consensus 173 I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~-~~~~ 251 (371)
T PRK13520 173 LSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTP-YLTS 251 (371)
T ss_pred HHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcccCc-cccC
Confidence 456889999999999866533 444433 488899999985 778888887654 6665432222 2211
Q ss_pred cccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 359 ~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.. .....+|++...++++..+++.+.+. |++++.++..++++++++.|+++ |+.
T Consensus 252 ~~---~~~~~gt~~~~~~~~~~~al~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~ 305 (371)
T PRK13520 252 KK---QATLTGTRSGAGVAATYAVMKYLGRE-GYRKVVERCMENTRWLAEELKER-GFE 305 (371)
T ss_pred CC---CcceEeeccChHHHHHHHHHhhhcHh-HHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence 11 11234688888899999999999877 89999999999999999999987 454
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-17 Score=171.43 Aligned_cols=264 Identities=18% Similarity=0.127 Sum_probs=164.1
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
.++++.++.+.|+ +++++..++.... |. .++.+...++.+++|+.+++++|+++. +++++ .|+|+++..
T Consensus 23 ~~~~~~~~~~~~~-~~~a~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~~~-~g~~~~~~~- 91 (373)
T TIGR03812 23 RILGSMCTNPHPI-AVKAYDMFIETNL--GD-----PGLFPGTKKIEEEVVGSLGNLLHLPDA-YGYIV-SGGTEANIQ- 91 (373)
T ss_pred cEEEEEeCCchHH-HHHHHHHHhhcCC--CC-----cccCccHHHHHHHHHHHHHHHhCCCCC-CeEEe-ccHHHHHHH-
Confidence 4688888876655 5777777654321 11 111233567889999999999999765 45555 457773221
Q ss_pred HHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhh---CCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 132 AMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI---GRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 132 alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~---~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
++.. ..++. .+|+++.+..+++++ |.+.++.+|...+..+.
T Consensus 92 ~~~~---------------------------~~~~~~~~~~g~~vl~~~~~h~~--~~~~~~~~G~~~~~v~~------- 135 (373)
T TIGR03812 92 AVRA---------------------------AKNLAREEKRTPNIIVPESAHFS--FEKAAEMLGLELRYAPL------- 135 (373)
T ss_pred HHHH---------------------------HHHHHhccCCCcEEEECCcchHH--HHHHHHHcCCeEEEEee-------
Confidence 1110 11211 133444444445554 45566777764333221
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV 288 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv 288 (621)
++....+.+.+ +. .+++++..+.+++++|.+|.
T Consensus 136 -------------------------~~~~~~d~~~l---------------------~~-~l~~~~~~vv~~~~~~~tG~ 168 (373)
T TIGR03812 136 -------------------------DEDYTVDVKDV---------------------ED-LIDDNTIGIVGIAGTTELGQ 168 (373)
T ss_pred -------------------------CCCCCcCHHHH---------------------HH-HHhhCcEEEEEECCCCCCCc
Confidence 01111111221 11 23445544444456789999
Q ss_pred cccc-----ccccCCCcEEEecccccCCC----------ccccccc--ceEEecccccc-CCCccEEEE-EchhHHhhhC
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSR----------KFDVSKF--GVIIAGAQKNI-GPAGITVVI-VREDLLEYAL 349 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~----------pIDv~~~--gvl~asaqK~l-GP~Glg~li-vr~~ll~~~~ 349 (621)
..|+ +++++|++++||++++.+.. ++|+... +.+.+++|||+ +|.|.|.++ .++++++.+.
T Consensus 169 ~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~ 248 (373)
T TIGR03812 169 IDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLS 248 (373)
T ss_pred cCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhc
Confidence 9986 45678999999999975543 4555433 48889999986 477777555 5677776653
Q ss_pred CCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 350 PITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 350 ~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
...| |+... ......+|+|...+.++..+++++.++ |++++.++..+++++|++.|.+++
T Consensus 249 ~~~~-~~~~~---~~~~~~gt~~~~~~~~~~~~l~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~g 308 (373)
T TIGR03812 249 VDAP-YLTVK---KQATITGTRSGASAAATYAVIKYLGRE-GYRKIVAECMENTRYLVEELKKIG 308 (373)
T ss_pred ccCc-ccCCC---CCcceEeechhHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2222 22111 112334799999999999999999887 899999999999999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-17 Score=175.60 Aligned_cols=273 Identities=14% Similarity=0.115 Sum_probs=181.9
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCE-EEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYK-ILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~ye-I~f~~gggT~~~ 128 (621)
++.++-.|.....+.+.++++..++.+..+...+ .+..+....++.+++++.++++||++++.. .+| ++|||+
T Consensus 22 ~~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~---~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~-TsGgTe-- 95 (380)
T PRK02769 22 QYFNVGYPEAADFDYSALKRFFSFSINNCGDPYS---KSNYPLNSFDFERDVMNFFAELFKIPFNESWGYI-TNGGTE-- 95 (380)
T ss_pred hhcccCCCchhhcCHHHHHHHHHhhhccCCCccc---cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEE-ecChHH--
Confidence 4556666777878777788887776553333222 222233456788899999999999986422 255 588999
Q ss_pred hHHHHHHhhhcc--CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccc
Q psy8733 129 AAVAMNLISSSM--NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 129 ~a~alNlla~~~--~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
+ |+.|-+. ++.++++|++++. .+++- .+.++..|......+..
T Consensus 96 ---a-n~~a~~~ar~~~~~~~ii~s~~-------------------------~H~Sv--~ka~~~lg~~~~~V~~~---- 140 (380)
T PRK02769 96 ---G-NLYGCYLARELFPDGTLYYSKD-------------------------THYSV--SKIARLLRIKSRVITSL---- 140 (380)
T ss_pred ---H-HHHHHHHHHHhCCCcEEEeCCC-------------------------ceehH--HHHHHHcCCCCceeccC----
Confidence 4 5554221 2334444544431 22221 23344455321111100
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccC-CCCCceEEEEeccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWN-RDPEASYLYYCDNETV 285 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~-i~~~t~~V~~thnET~ 285 (621)
+.+ .++.++++ +.+. -...+.+|++++..|.
T Consensus 141 ---------------------------~~g-~id~~~L~--------------------~~i~~~~~~t~lvv~t~gtt~ 172 (380)
T PRK02769 141 ---------------------------PNG-EIDYDDLI--------------------SKIKENKNQPPIIFANIGTTM 172 (380)
T ss_pred ---------------------------CCC-cCcHHHHH--------------------HHHHhCCCCcEEEEEEeCCCC
Confidence 000 12222210 0010 1234899999999999
Q ss_pred ccccccc-----ccccCC---CcEEEecccccCCCc-------ccccc-cceEEeccccccC-CCccEEEEEchhHHhhh
Q psy8733 286 DGVEFNY-----IPDSQG---IPLVSDMSSNFLSRK-------FDVSK-FGVIIAGAQKNIG-PAGITVVIVREDLLEYA 348 (621)
Q Consensus 286 tGv~~p~-----i~~~~g---~llvvDavSs~G~~p-------IDv~~-~gvl~asaqK~lG-P~Glg~livr~~ll~~~ 348 (621)
+|...|+ +++++| ++++|||+|+.+..| +|+.+ .|.+.+++|||+| |.|+|++++|++.++++
T Consensus 173 tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~ 252 (380)
T PRK02769 173 TGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVERI 252 (380)
T ss_pred CcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhhhhhc
Confidence 9999997 345676 699999999999996 77754 5599999999997 99999999999988766
Q ss_pred CCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 349 LPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 349 ~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
.+. ..|++. ......+|+|.+.++++..+|+++..+ |++++.++..++++++++.|++.+ +..
T Consensus 253 ~~~-~~yl~~----~d~t~~GSR~g~~~l~lw~aL~~lg~~-G~~~~~~~~~~la~~l~~~L~~~g-~~~ 315 (380)
T PRK02769 253 SVD-VDYIGS----RDQTISGSRNGHTALLLWAAIRSLGSK-GLRQRVQHCLDMAQYAVDRLQANG-IPA 315 (380)
T ss_pred ccC-ccccCC----CCCCccCCCCcHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHhCC-CEE
Confidence 432 234321 123456899999999999999999888 899999999999999999998863 543
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=168.10 Aligned_cols=277 Identities=18% Similarity=0.076 Sum_probs=169.5
Q ss_pred CceeccCC--------CCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCC-CEEEEE-
Q psy8733 51 PVINFGAG--------PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN-YKILFL- 120 (621)
Q Consensus 51 ~~~lf~aG--------Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~-yeI~f~- 120 (621)
.+|+++++ ++++.+++.+.|...+.....+. +-++...++.+++++.++++||+++. .++.|+
T Consensus 34 ~iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np-------~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~ 106 (431)
T TIGR01788 34 ELSLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDK-------DEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTS 106 (431)
T ss_pred HhhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCc-------ccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEE
Confidence 46788888 89989999999998875322211 11233458999999999999999832 257774
Q ss_pred cCCcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHh-----hCCC--CcEEEEEcChHHHH-HHHHHHHh
Q psy8733 121 QGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNL-----IGRT--GKADYVVTGSWSKK-AAAEAEKY 192 (621)
Q Consensus 121 ~gggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL-----~~~g--~~~~~v~tG~~~~~-~~~~a~~~ 192 (621)
++|||+ |.|+ | +-++ .+. ...| ..-..+.++.-.|. |.+.++..
T Consensus 107 TsGgTE-----An~~-a---------------------l~~a-r~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~l 158 (431)
T TIGR01788 107 TIGSSE-----AIML-G---------------------GLAM-KWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYF 158 (431)
T ss_pred echHHH-----HHHH-H---------------------HHHH-HHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHc
Confidence 689999 4554 1 1111 100 0001 00123333444443 34455555
Q ss_pred CCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC
Q psy8733 193 GKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP 272 (621)
Q Consensus 193 G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~ 272 (621)
|.....++.. + -+-.++++++ +-.+++
T Consensus 159 g~~v~~i~~d------------------------~-------~~~~vd~~~L----------------------~~~i~~ 185 (431)
T TIGR01788 159 DVELREVPMD------------------------P-------GRYVIDPEQV----------------------VEAVDE 185 (431)
T ss_pred CceeEEEecC------------------------C-------CceeeCHHHH----------------------HHHHhh
Confidence 6432222110 0 0001122221 013567
Q ss_pred CceEEEEecccccccccccc-----ccccC------CCcEEEecccc-------cCCCccccccc--ceEEecccccc-C
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQ------GIPLVSDMSSN-------FLSRKFDVSKF--GVIIAGAQKNI-G 331 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~------g~llvvDavSs-------~G~~pIDv~~~--gvl~asaqK~l-G 331 (621)
++.+|++++..|.+|++.|+ +++++ +++++||++|+ ++..++|++.. |.+.+++|||+ |
T Consensus 186 ~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~ 265 (431)
T TIGR01788 186 NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLV 265 (431)
T ss_pred CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCC
Confidence 89999999999999999997 34566 89999999999 45555555322 36999999998 8
Q ss_pred CCccEEEEEchhH-H-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVREDL-L-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~Glg~livr~~l-l-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
|.|+|++++|++- + +.+. ..+.|+.... .+ ....++-+-..+.++-..|..+-.. |++++.+++.++++++++.
T Consensus 266 P~g~G~l~~r~~~~l~~~~~-~~~~yl~~~~-~~-~t~~~sR~g~~al~~w~~l~~lG~~-G~~~i~~~~~~la~~l~~~ 341 (431)
T TIGR01788 266 YPGVGWVIWRDEEALPEELI-FHVNYLGGDE-PT-FTLNFSRPANQVIAQYYNFLRLGRE-GYRKIMQNSLDVARYLAEE 341 (431)
T ss_pred CCCcEEEEEeChHHcchhhe-ecccccCCCC-CC-cceecCchHHHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999862 1 2111 1223432211 00 1111222222333344456666566 8999999999999999999
Q ss_pred HHccCCcccC
Q psy8733 410 IDNSDKFYEC 419 (621)
Q Consensus 410 L~~~~g~~~~ 419 (621)
|.+.++|.+.
T Consensus 342 L~~~~~~el~ 351 (431)
T TIGR01788 342 IAKLGPFEII 351 (431)
T ss_pred HHhCCCEEEe
Confidence 9999877665
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=164.32 Aligned_cols=139 Identities=12% Similarity=0.158 Sum_probs=97.2
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchh
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVRED 343 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ 343 (621)
+++++|+++|.++++|...|+ +++++|+++++|.++++|..+++..+++ +++.|.||++| +.++|+++.+++
T Consensus 145 ~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~ 224 (370)
T TIGR02539 145 KPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEE 224 (370)
T ss_pred CCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHH
Confidence 368899999999999999985 4568899999999999998888876664 88899999997 455899999999
Q ss_pred HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 344 LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 344 ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+++.+....+. +++... .....|++...+.++.++++...+. ++...+. .++++++++.|.+++ +..
T Consensus 225 ~i~~l~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~al~~~~~~--l~~~~~~-~~~~~~l~~~L~~~g-~~~ 291 (370)
T TIGR02539 225 WEDIVLRKSRY-SPVKEV---ELLGCTSRGAPIVTMMASFPHVVER--VKRWDEE-VKKTRWFVAELEDIG-FIQ 291 (370)
T ss_pred HHhhhcccccC-Ccccee---eeecccccccHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHhCC-cEE
Confidence 99887654332 122211 0112333334455555566654443 4443333 344568999999885 544
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-15 Score=164.49 Aligned_cols=285 Identities=13% Similarity=0.095 Sum_probs=177.0
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHH-HHHHHHHHHhCCCCCCEEEE-E-cCCcch
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINN-DTQAALRELLNVPNNYKILF-L-QGGGTG 126 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~-~ar~~La~Ll~~p~~yeI~f-~-~gggT~ 126 (621)
+...++.|.--.+++.|++++...+.+-.+.|.+-- ..+.+.++.+.++ .++++.+++|+.... .++| . +.+|+.
T Consensus 34 ~~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~-r~~~G~~~~d~lE~~~~~~~~~~f~~~~~-~~~~nv~~~SG~~ 111 (475)
T PLN03226 34 WKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGA-RYYGGNEYIDQIETLCQKRALEAFRLDPE-KWGVNVQPLSGSP 111 (475)
T ss_pred HcCeeEecCCccCCHHHHHHHhhHHhccccCCCCCC-cCcCCChhHHHHHHHHHHHHHHHhCCCcc-eeEEecCcCchHH
Confidence 457889999999999999999999955444443211 1122333444444 578889999998764 3433 2 245666
Q ss_pred hhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEE---EEcChHHHHHHHHHHHhCCceeeecccc
Q psy8733 127 MFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADY---VVTGSWSKKAAAEAEKYGKVNLVIPKVS 203 (621)
Q Consensus 127 ~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~---v~tG~~~~~~~~~a~~~G~~~~~~~~~~ 203 (621)
++. ++..+|+++||++.. -..|+++|.+.....+.+.......
T Consensus 112 AN~-------------------------------av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~--- 157 (475)
T PLN03226 112 ANF-------------------------------AVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFE--- 157 (475)
T ss_pred HHH-------------------------------HHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEE---
Confidence 333 344455555555543 2346677655433322221100000
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNE 283 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnE 283 (621)
.++|. +. +-...+|.+.+ +......++++|.+ .+
T Consensus 158 ------------------~~~y~----~~-~~~g~iD~d~L---------------------e~~l~~~~pklIv~--~~ 191 (475)
T PLN03226 158 ------------------SMPYR----LD-ESTGLIDYDKL---------------------EKKAMLFRPKLIIA--GA 191 (475)
T ss_pred ------------------eeeee----ec-CCCCCcCHHHH---------------------HHHHhhcCCeEEEE--ec
Confidence 00000 00 00000111111 11111235666544 46
Q ss_pred ccccccccc-----ccccCCCcEEEecccccCCCccccc-----ccceEEecccccc-CCCccEEEEEchhHHhhhCCCC
Q psy8733 284 TVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-----KFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT 352 (621)
Q Consensus 284 T~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-----~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~ 352 (621)
+++|...|+ +++++|++++||++|++|..+.+.. ..|++++++|||| ||.| |+++.+++.++...+..
T Consensus 192 S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G-g~I~~~~~~~~~~~~g~ 270 (475)
T PLN03226 192 SAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG-GMIFFRKGPKPPKGQGE 270 (475)
T ss_pred CcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc-eEEEEchhhcccccCCC
Confidence 778888885 5678999999999999999876643 4579999999999 7999 99999988765543332
Q ss_pred Cceeecccccc---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 353 PTVFHFKINAD---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 353 P~~ld~~~~~~---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+.+.+|..... ....-++|+...++++.++|+++.+. |.+.+.++..+++++|++.|.+. |+.+.
T Consensus 271 ~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~-~~~~~~~~~~~na~~L~~~L~~~-G~~l~ 338 (475)
T PLN03226 271 GAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTP-EFKAYQKQVKANAAALANRLMSK-GYKLV 338 (475)
T ss_pred ccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 23334421111 11223689999999999999999988 89999999999999999999885 46543
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=162.56 Aligned_cols=267 Identities=12% Similarity=0.092 Sum_probs=161.6
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHH-HHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINND-TQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~-ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
++..++.|||..+|+.|++++.+++....+.|.+- .....+..+.+.+++ +++.+++++|++.. .|++ +|||.
T Consensus 19 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~-~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~-~v~~--~sgt~-- 92 (402)
T cd00378 19 RETLELIASENFTSPAVMEAMGSDLTNKYAEGYPG-KRYYGGCEYVDEIEDLAIERAKKLFGAEYA-NVQP--HSGSQ-- 92 (402)
T ss_pred HhCeeeeccCCcCCHHHHHHhcccccccccCCCCC-CcccCCchHHHHHHHHHHHHHHHHhCCCce-eeec--CCcHH--
Confidence 46899999999999999999998874333222221 011124566666776 78889999999753 3433 45788
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHH---HHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKK---AAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~---~~~~a~~~G~~~~~~~~~~~~ 205 (621)
+++++...+ +++||+|++..- .+.++. ....++..|......+.
T Consensus 93 ---a~~~~l~~l-~~~Gd~Vl~~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~---- 139 (402)
T cd00378 93 ---ANLAVYFAL-LEPGDTIMGLDL-------------------------SHGGHLTHGSFTKVSASGKLFESVPY---- 139 (402)
T ss_pred ---HHHHHHHHh-cCCCCEEEEecC-------------------------ccCccccccccccccccceeEEEecC----
Confidence 344433333 456666666532 111110 00012333432111110
Q ss_pred cccCCCCCCCCCCCccccccccCccccCcc-chhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSW-SKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 284 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w-~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET 284 (621)
+.++ ...++++++ +..-..+++++|.+++..+
T Consensus 140 --------------------------~~~~~~~~id~~~l---------------------~~~i~~~~~~~v~~~~~~~ 172 (402)
T cd00378 140 --------------------------GVDPETGLIDYDAL---------------------EKMALEFKPKLIVAGASAY 172 (402)
T ss_pred --------------------------CcCcccCCcCHHHH---------------------HHHHHhCCCCEEEecCccc
Confidence 0000 011222221 1111135688888887655
Q ss_pred cccccccc-----ccccCCCcEEEecccccCC-----CcccccccceEEecccccc-CCCccEEEEEchhHHhhhCCCCC
Q psy8733 285 VDGVEFNY-----IPDSQGIPLVSDMSSNFLS-----RKFDVSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITP 353 (621)
Q Consensus 285 ~tGv~~p~-----i~~~~g~llvvDavSs~G~-----~pIDv~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P 353 (621)
|+..|+ +++++|+++++|++++.|. .+.+++..|++++|.||++ ||.|.++++.++++.+++....
T Consensus 173 --~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~i~~~~~~~~~~l~~~~- 249 (402)
T cd00378 173 --PRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGELAKKINSAV- 249 (402)
T ss_pred --CCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceEEEeccHHHHHHHHHHh-
Confidence 666664 4568999999999986653 2444544468999999999 7888666665558877653211
Q ss_pred ceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 354 TVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 354 ~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.....+||+...+.++..++..+.+. +.+++.++.+++++++++.|.+. |+.
T Consensus 250 ----------~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~ 301 (402)
T cd00378 250 ----------FPGLQGGPHLHVIAAKAVALKEALEP-EFKAYAKQVVENAKALAEALKER-GFK 301 (402)
T ss_pred ----------CccccCCchHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence 11234577777888888888877664 46788888999999999999887 454
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-15 Score=163.18 Aligned_cols=268 Identities=13% Similarity=0.093 Sum_probs=161.9
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHH-HHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINND-TQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~-ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
+..+++.|++.++|++|++++..++.+....|.+. .....+.++.+.+++ +|+.+++++|++.. .|++ ++||.
T Consensus 25 ~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~la~~~g~~~~-~i~~--~sgt~-- 98 (416)
T PRK00011 25 EEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPG-KRYYGGCEYVDVVEQLAIDRAKELFGAEYA-NVQP--HSGSQ-- 98 (416)
T ss_pred hcCeeeecccCcCCHHHHHHHhchhhcccccCCCC-ccccccchHHHHHHHHHHHHHHHHhCCCce-eeec--CCchH--
Confidence 45789999999999999999988865432222211 112223445666766 89999999999763 4544 45787
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
+++++...+ +++||+|++..- .|.+ .++..........|...+..+.
T Consensus 99 ---al~~~l~~l-~~~gd~Vl~~~~----~~~~------------------~~~~~~~~~~~~~g~~~~~~~~------- 145 (416)
T PRK00011 99 ---ANAAVYFAL-LKPGDTILGMDL----AHGG------------------HLTHGSPVNFSGKLYNVVSYGV------- 145 (416)
T ss_pred ---HHHHHHHHh-cCCCCEEEEecc----ccCC------------------ccccccccccccceeeEeecCc-------
Confidence 344443334 567777776642 1100 0000000000111211111000
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCC-CCceEEEEeccccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD-PEASYLYYCDNETVDG 287 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~-~~t~~V~~thnET~tG 287 (621)
+ +....++++++ +. .++ .++++|.+++.+ +|
T Consensus 146 -----------------------~-~~~~~~d~~~l---------------------~~-~i~~~~~k~v~~~~~~--~~ 177 (416)
T PRK00011 146 -----------------------D-EETGLIDYDEV---------------------EK-LALEHKPKLIIAGASA--YS 177 (416)
T ss_pred -----------------------C-cccCCcCHHHH---------------------HH-HHHhcCCCEEEECCCc--CC
Confidence 0 00001122221 11 122 368888887644 46
Q ss_pred ccccc-----ccccCCCcEEEecccccCCC-----cccccccceEEecccccc-CCCccEEEEEchhHHhhhCCCCCcee
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSSNFLSR-----KFDVSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVF 356 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavSs~G~~-----pIDv~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~~l 356 (621)
...|+ +++++|+++++|+++++|.. +.+++..|++++|.||++ ||.|-.++..++++++++....
T Consensus 178 ~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~gg~i~~~~~~~~~~l~~~~---- 253 (416)
T PRK00011 178 RPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILTNDEELAKKINSAV---- 253 (416)
T ss_pred CccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCceEEEeCCHHHHHHHHHHh----
Confidence 66664 45688999999999887653 556665569999999999 6887655554578877653211
Q ss_pred eccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 357 HFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 357 d~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
....++||....++++..++..+.+. +++.+.++.+++++++++.|++.+ +.
T Consensus 254 -------~~~~~~~~~~~~~aa~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~~ 305 (416)
T PRK00011 254 -------FPGIQGGPLMHVIAAKAVAFKEALEP-EFKEYAQQVVKNAKALAEALAERG-FR 305 (416)
T ss_pred -------CccccCCccHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHhCC-Ce
Confidence 11234577777888888888776666 789999999999999999999874 53
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-14 Score=154.34 Aligned_cols=144 Identities=14% Similarity=0.175 Sum_probs=104.0
Q ss_pred CCCCceEEEEecccccccccccc------ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCC-----CccE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY------IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGP-----AGIT 336 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~------i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP-----~Glg 336 (621)
+++++++|.+++.+ .+|+..|. +++++|+++|+|++++.+..+.+..+++ ++++|+|||++| +|+|
T Consensus 156 i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~~p~g~Ggp~~g 234 (398)
T cd00613 156 VSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAG 234 (398)
T ss_pred cCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccCCCCCCCCCcee
Confidence 56789999999975 68999874 3468999999999998888888777765 999999999854 7899
Q ss_pred EEEEchhHHhhhCCCCC-----------ceeeccccccC----CCc--cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy8733 337 VVIVREDLLEYALPITP-----------TVFHFKINADN----NSV--YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 399 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P-----------~~ld~~~~~~~----~s~--~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~ 399 (621)
++++++++++.+.+... .++++...... ..+ ..|.+.....+...+++++.+. |++++.++.
T Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~-g~~~~~~~~ 313 (398)
T cd00613 235 FFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPE-GLKEIAERA 313 (398)
T ss_pred EEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHH-HHHHHHHHH
Confidence 99999999877543211 01111100000 111 1233444555566667777776 899999999
Q ss_pred HHHHHHHHHHHHccCC
Q psy8733 400 LQKSVLLYQEIDNSDK 415 (621)
Q Consensus 400 ~~la~~L~e~L~~~~g 415 (621)
+++++++++.|+++++
T Consensus 314 ~~~~~~l~~~L~~~~~ 329 (398)
T cd00613 314 HLNANYLAKRLKEVGG 329 (398)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999998863
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-14 Score=151.39 Aligned_cols=255 Identities=11% Similarity=0.138 Sum_probs=160.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhh
Q psy8733 58 GPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLIS 137 (621)
Q Consensus 58 GPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla 137 (621)
|-+.+|++|+++|.++..+|. . ..++.+++++.+++++|++ +++|+ +|+|. ++++..
T Consensus 21 g~s~~~~~v~~a~~~~~~~~~-----------~---~~~~~~~~~~~~a~~~g~~---~~~~~-~g~t~-----al~~al 77 (363)
T TIGR01437 21 GVSTVSDEVADAQKRGAQNYF-----------E---IKELVNKTGEYIANLLGVE---DAVIV-SSASA-----GIAQSV 77 (363)
T ss_pred CCCCCCHHHHHHHHHHHhcCC-----------C---HHHHHHHHHHHHHHhhCCC---eEEEE-cCHHH-----HHHHHH
Confidence 667799999999999875442 1 2467899999999999985 47776 66888 566655
Q ss_pred hccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChH---HHHHHHHHHHhCCceeeecccccccccCCCCCC
Q psy8733 138 SSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSW---SKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW 214 (621)
Q Consensus 138 ~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~---~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~ 214 (621)
.++ +++||+|++.. +.... .+++++.. ..++| +..|...+...|...+..+
T Consensus 78 ~al-~~~Gd~~~~~~---------~~~s~-~~~~eVi~-~~~~~~~~~~~~~~~~~~~g~~~v~v~-------------- 131 (363)
T TIGR01437 78 AAV-ITRGNRYLVEN---------LHDSK-IEVNEVVL-PKGHNVDYGAPVETMVRLGGGKVVEAG-------------- 131 (363)
T ss_pred HHH-hcCCCcchhhc---------ccccc-cccceEEE-ECccchhcCCchHHHHHhcCCeEEEEc--------------
Confidence 555 67788776532 12222 23444443 22222 2123334444554322211
Q ss_pred CCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEE-ecccccccccccc-
Q psy8733 215 NRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYY-CDNETVDGVEFNY- 292 (621)
Q Consensus 215 ~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~-thnET~tGv~~p~- 292 (621)
.+|. +++|++ + -.++++|+++.+ ++..+.+|...|+
T Consensus 132 ------------------~~~~--~d~~~l---------------------e-~ai~~~t~ai~~v~~~~~~~g~~~~~~ 169 (363)
T TIGR01437 132 ------------------YANE--CSAEQL---------------------E-AAITEKTAAILYIKSHHCVQKSMLSVE 169 (363)
T ss_pred ------------------CCCC--CCHHHH---------------------H-HhcChhceEEEEEecCCCCcCCcCCHH
Confidence 0111 222221 1 136678887664 4445678988885
Q ss_pred ----ccccCCCcEEEecccccCCCccc-cccc--ceEEecccccc-CCCccEEEEEchhHHhhhCCCCCceeeccccccC
Q psy8733 293 ----IPDSQGIPLVSDMSSNFLSRKFD-VSKF--GVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKINADN 364 (621)
Q Consensus 293 ----i~~~~g~llvvDavSs~G~~pID-v~~~--gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~ 364 (621)
+++++|+++++|++|+. +++ +.++ |++++|+||++ ||. .|+++.++++++.+.+.... ...
T Consensus 170 ~i~~~a~~~gi~vivD~a~~~---~~~~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~~~~i~~~~~~~~~-------~~~ 238 (363)
T TIGR01437 170 DAAQVAQEHNLPLIVDAAAEE---DLQKYYRLGADLVIYSGAKAIEGPT-SGLVLGKKKYIEWVKLQSKG-------IGR 238 (363)
T ss_pred HHHHHHHHcCCeEEEECCCCC---chHHHHHcCCCEEEEeCCcccCCCc-eEEEEEcHHHHHHHHhccCC-------Ccc
Confidence 45789999999999973 221 1133 59999999988 688 78988888888765321110 001
Q ss_pred CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 365 NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 365 ~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
....+|. .+.++.++++++.+. |.+.+.++.++ .+++++.|.+++|+...
T Consensus 239 ~~~~~~~---~~~gl~aAl~~~~~~-~~~~~~~~~~~-~~~l~~~L~~i~g~~~~ 288 (363)
T TIGR01437 239 AMKVGKE---NILGLTAALEQYLST-GKESGAEMVAK-LTPFIEALNTLKGVSAS 288 (363)
T ss_pred eeccCHH---HHHHHHHHHHHHHcc-CcccHHHHHHH-HHHHHHHHhcCCCeEEE
Confidence 1123443 478999999999887 67777766664 55799999998877544
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-13 Score=145.76 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=96.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEE--ecccccCCCcccccccc--eEEeccccc-----cCCCcc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVS--DMSSNFLSRKFDVSKFG--VIIAGAQKN-----IGPAGI 335 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvv--DavSs~G~~pIDv~~~g--vl~asaqK~-----lGP~Gl 335 (621)
+++++++|.+++- |.+|...|+ +++++|+++++ |.+ ++|..+.+ .+++ ++++++||| +|.+|+
T Consensus 201 i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~-~~~~~D~~~~s~~k~~~~~~~~Gpg~ 277 (447)
T PRK00451 201 VDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPP-GEYGADIVVGEGQPLGIPLSFGGPYL 277 (447)
T ss_pred cCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCc-ccCCCCEEEECCCcCCCCCCCCCCCc
Confidence 5678999999985 899999986 45678999988 766 45654422 4454 899999997 665699
Q ss_pred EEEEEchhHHhhhCCCCC----------ce-eecccc----ccCCCccCCchHHHH--HHHHHHHHHHHhhCCHHHHHHH
Q psy8733 336 TVVIVREDLLEYALPITP----------TV-FHFKIN----ADNNSVYNTPPTFVV--HVIQRVFAWIKRQGGLAKMEQN 398 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P----------~~-ld~~~~----~~~~s~~~TP~v~~I--~aL~~aL~~i~~~gGl~~i~~r 398 (621)
|++++++++++++.+... .| ++.... .....+.+++....+ .+...+++++.++ |++++.++
T Consensus 278 G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~-g~~~~~~~ 356 (447)
T PRK00451 278 GFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPE-GLRELAEQ 356 (447)
T ss_pred hHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHH-HHHHHHHH
Confidence 999999999887643210 01 110000 011122222222223 3333456777777 89999999
Q ss_pred HHHHHHHHHHHHHccCCcc
Q psy8733 399 SLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 399 ~~~la~~L~e~L~~~~g~~ 417 (621)
+.+++++++++|.+++|+.
T Consensus 357 ~~~~~~~l~~~L~~~~g~~ 375 (447)
T PRK00451 357 NHQKAHYLAERLAEIGGVE 375 (447)
T ss_pred HHHHHHHHHHHHhhcCCEE
Confidence 9999999999999887554
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.4e-14 Score=147.09 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=94.0
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc--------ccceEEeccccccC-CCccEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS--------KFGVIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~--------~~gvl~asaqK~lG-P~Glg~l 338 (621)
++++|.+++.+|++|...|+ +++++|+++++|++++.+..+++.. ..|++.++.||+++ |.|+|++
T Consensus 148 ~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~ 227 (345)
T cd06450 148 NPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAV 227 (345)
T ss_pred CcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHH
Confidence 67899999999999999886 4568899999999999998876542 34588999999995 8999988
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+++ +.++.++++++... |++++.++..++++++++.|.+++++..
T Consensus 228 ~~~----------------------------------~~~~~~~l~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 272 (345)
T cd06450 228 LVR----------------------------------ALKLWATLRRFGRD-GYGEHIDRIVDLAKYLAELIRADPGFEL 272 (345)
T ss_pred HHH----------------------------------HHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 766 66677788988877 8999999999999999999999876643
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-13 Score=140.29 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=96.3
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc--------cccccc--ceEEeccccccCCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK--------FDVSKF--GVIIAGAQKNIGPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p--------IDv~~~--gvl~asaqK~lGP~Glg 336 (621)
+.+++|.+++..+.+|+..|+ +++++|+++|+|+++++|..+ ++.... ++++.|.||++|++| |
T Consensus 131 ~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-G 209 (349)
T cd06454 131 YGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG-G 209 (349)
T ss_pred CCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC-C
Confidence 356788888888899999986 456899999999999987653 333333 488899999999887 8
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++.+++......+ ...++++...++++.++++.+.+ .+.+.++..++.+++++.|.+++
T Consensus 210 ~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~l~~~g 274 (349)
T cd06454 210 YIAGSKELIDYLRSYARGF----------IFSTSLPPAVAAAALAALEVLQG---GPERRERLQENVRYLRRGLKELG 274 (349)
T ss_pred EEECCHHHHHHHHHhchhh----------hccCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888876653211100 11235666778888999998865 36778899999999999998763
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-13 Score=144.40 Aligned_cols=127 Identities=13% Similarity=0.216 Sum_probs=91.8
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc----ccc-----eEEeccccccCCCccEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS----KFG-----VIIAGAQKNIGPAGITV 337 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~----~~g-----vl~asaqK~lGP~Glg~ 337 (621)
+++.+|.+++..+.+|.+.|+ +++++|++++||.+|++|..+.+.. +|+ +++.+-.|.+||.|.++
T Consensus 142 ~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~~v 221 (370)
T PRK05937 142 FGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGAAL 221 (370)
T ss_pred CCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCceEE
Confidence 346688899999999999996 4567899999999999999888863 343 45677779999999998
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
++.++ ..+.+....+.+ ....+.|...++++.++++++.+. | +.+.++.+++.+++++.|+
T Consensus 222 l~~~~-~~~~~~~~~~~~----------~~s~~~~~~~~~a~~aal~~l~~~-~-~~~~~~l~~l~~~l~~~l~ 282 (370)
T PRK05937 222 LSSSE-VKQDLMLNSPPL----------RYSTGLPPHLLISIQVAYDFLSQE-G-ELARKQLFRLKEYFAQKFS 282 (370)
T ss_pred EcCHH-HHHHHHHhCCCC----------eecCCCCHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHhcC
Confidence 87754 333222111111 111334556789999999999887 5 5667778888888877553
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-12 Score=140.28 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=95.5
Q ss_pred CCCCceEEEEeccccccccc-ccc-----ccccCCCcEEEecccccCCC-cccccccc--eEEeccccccC-C-----Cc
Q psy8733 270 RDPEASYLYYCDNETVDGVE-FNY-----IPDSQGIPLVSDMSSNFLSR-KFDVSKFG--VIIAGAQKNIG-P-----AG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~-~p~-----i~~~~g~llvvDavSs~G~~-pIDv~~~g--vl~asaqK~lG-P-----~G 334 (621)
+++++++|.+++ .+.+|+. .|+ +++++|++++||++++++.. .++..++| ++++++||+|| | ||
T Consensus 205 i~~~t~~V~v~~-Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~ 283 (481)
T PRK04366 205 VGEDTAALMLTN-PNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPG 283 (481)
T ss_pred cccCCeEEEEeC-CCCccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCC
Confidence 567899998886 4588986 354 34578999999999986632 45777776 99999999985 5 67
Q ss_pred cEEEEEchhHHhhhCCCC------Cceeecccccc-CCCccCCchHHHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHH
Q psy8733 335 ITVVIVREDLLEYALPIT------PTVFHFKINAD-NNSVYNTPPTFVVHVIQRVFAWIKRQG--GLAKMEQNSLQKSVL 405 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~------P~~ld~~~~~~-~~s~~~TP~v~~I~aL~~aL~~i~~~g--Gl~~i~~r~~~la~~ 405 (621)
+|++++|++++.++.+.. ...+++...+. ......|++. .++..++.|+...| |+.++.+++.+++++
T Consensus 284 ~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~---l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~ 360 (481)
T PRK04366 284 SGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNF---GVLVRAYAYIRSLGAEGLREVSEDAVLNANY 360 (481)
T ss_pred eeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999988764321 11122211000 1223345554 44445555555442 677888889999999
Q ss_pred HHHHHHcc
Q psy8733 406 LYQEIDNS 413 (621)
Q Consensus 406 L~e~L~~~ 413 (621)
|+++|.++
T Consensus 361 l~~~L~~~ 368 (481)
T PRK04366 361 LKARLKDI 368 (481)
T ss_pred HHHHhHhh
Confidence 99999875
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=145.52 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=106.0
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccc--------cccceEEecccccc-CCCcc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDV--------SKFGVIIAGAQKNI-GPAGI 335 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv--------~~~gvl~asaqK~l-GP~Gl 335 (621)
+.+.++.|+++|.++..+ ..|+ +++++|++++||+++++|..+.++ ...|+++++.||+| ||.|
T Consensus 216 ~~~~~plvii~g~S~~~~-~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~G- 293 (493)
T PRK13580 216 AREFKPLILVAGYSAYPR-RVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRG- 293 (493)
T ss_pred HhhcCCEEEEeCccccCC-CcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCCe-
Confidence 556788999999999855 6675 567899999999999999988766 23469999999999 8998
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
|+++.++++.+.+.. . .+..++||..+.++++..+++.+.+. +.....++..+++++|.+.|.+.+
T Consensus 294 G~I~~~~~l~~~L~~-----------a-~P~i~gg~l~p~iAA~avAl~e~~~~-ef~~y~~~l~~Na~~La~~L~~~G- 359 (493)
T PRK13580 294 GLVLAKKEYADAVDK-----------G-CPLVLGGPLPHVMAAKAVALAEARTP-EFQKYAQQVVDNARALAEGFLKRG- 359 (493)
T ss_pred EEEEecHHHHHHHhh-----------C-CCcccCCCccHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 999999998776521 1 13456778778899998899988765 456788899999999999998875
Q ss_pred cc
Q psy8733 416 FY 417 (621)
Q Consensus 416 ~~ 417 (621)
|.
T Consensus 360 ~~ 361 (493)
T PRK13580 360 AR 361 (493)
T ss_pred CC
Confidence 53
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=145.15 Aligned_cols=269 Identities=12% Similarity=0.085 Sum_probs=170.8
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEE--EEEcCCcchhh
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKI--LFLQGGGTGMF 128 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI--~f~~gggT~~~ 128 (621)
+.++=.|--......++++|.+++.+..+.+.+. +-.+....++.+++++.+++++|++++ ++ +|+ +|||+
T Consensus 24 ~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~---~~~g~~a~~~e~~v~~~ia~llg~~~~-~~~G~fT-sGGTE-- 96 (374)
T PLN03032 24 SVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIE---SNYGVHSRQFEVGVLDWFARLWELEKD-EYWGYIT-TCGTE-- 96 (374)
T ss_pred hhccCCCchhccChHHHHHHHHhcccCCCCCccc---CCCCccHHHHHHHHHHHHHHHhCCCCc-cCCEEEe-CchHH--
Confidence 3455555555667778999999886544444332 222445678899999999999999764 45 776 67999
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHH-HHHHHhCCceeeecccccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAA-AEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~-~~a~~~G~~~~~~~~~~~~~~ 207 (621)
|. ++|- + + ..+.. ++.+ +..+.-+|... +.++.+|.....++..
T Consensus 97 ---aN-l~al--------------------~-~-ar~~~-~~~~---vi~s~~~H~Sv~kaa~~lg~~~~~V~~d----- 141 (374)
T PLN03032 97 ---GN-LHGI--------------------L-V-GREVF-PDGI---LYASRESHYSVFKAARMYRMEAVKVPTL----- 141 (374)
T ss_pred ---HH-HHHH--------------------H-H-HHHhC-CCcE---EEeCCCceeHHHHHHHHcCCCCeEeeeC-----
Confidence 33 3321 1 1 12211 2222 23333333332 3344455421111110
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC---CceEEEEecccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP---EASYLYYCDNET 284 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~---~t~~V~~thnET 284 (621)
. .-.+++++++ + .+++ ++.+|.+++..|
T Consensus 142 --------~-------------------~g~id~~~L~--------------------~--~i~~~~~~~~lvv~tagtt 172 (374)
T PLN03032 142 --------P-------------------SGEIDYDDLE--------------------R--ALAKNRDKPAILNVNIGTT 172 (374)
T ss_pred --------C-------------------CCcCcHHHHH--------------------H--HHHHcCCCCEEEEEEecCc
Confidence 0 0012222210 0 1222 577899999999
Q ss_pred cccccccc-----ccccCC-----CcEEEecccccCCCcc-------ccc-ccceEEeccccccC-CCccEEEEEchhHH
Q psy8733 285 VDGVEFNY-----IPDSQG-----IPLVSDMSSNFLSRKF-------DVS-KFGVIIAGAQKNIG-PAGITVVIVREDLL 345 (621)
Q Consensus 285 ~tGv~~p~-----i~~~~g-----~llvvDavSs~G~~pI-------Dv~-~~gvl~asaqK~lG-P~Glg~livr~~ll 345 (621)
.+|++.|+ +++++| ++++|||+++.+..|+ |+. ..|.+.+++||++| |.|+|++++|++.+
T Consensus 173 ~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~ 252 (374)
T PLN03032 173 VKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHV 252 (374)
T ss_pred CCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhh
Confidence 99999996 345665 5799999999999886 442 24589999999999 99999999999887
Q ss_pred hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 346 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 346 ~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
+.+.. .+.|+.... ....+|-+-+.+..+-.+|+.+-.+ |..++.++..++++++.+.|.+.+ +.
T Consensus 253 ~~~~~-~~~Yl~~~d----~ti~gSR~g~~~l~~w~~l~~~G~~-g~~~~~~~~~~~a~~l~~~l~~~~-~~ 317 (374)
T PLN03032 253 KALSQ-NVEYLNSRD----ATIMGSRNGHAPLYLWYTLRRKGYR-GIKRDVQHCMRNAHYLKDRLTEAG-LT 317 (374)
T ss_pred Hhhcc-CCcccCCCC----CcccCCCchHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHhCC-Cc
Confidence 65532 333443221 2233555555666667778888776 899999999999999999999864 54
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-12 Score=152.11 Aligned_cols=263 Identities=14% Similarity=0.175 Sum_probs=173.4
Q ss_pred CCceeccCCCCC----CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc
Q psy8733 50 HPVINFGAGPAK----LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGT 125 (621)
Q Consensus 50 ~~~~lf~aGPs~----~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT 125 (621)
.++|+...|-.. .|+.|++++.+...-|...+ ++.. .-|+...+.+.+.+..+++|+|++.. ++.|+. ++|
T Consensus 101 N~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~Tayt--PYqa-EisQG~lqal~~~Qt~ia~LtG~~~a-naSL~d-~aT 175 (993)
T PLN02414 101 NKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYT--PYQA-EIAQGRLESLLNYQTMITDLTGLPMS-NASLLD-EGT 175 (993)
T ss_pred CCccccccCCCCCCccCCHHHHHHHHhChHHHhhcC--CCch-HHHHHHHHHHHHHHHHHHHHhCCChh-hEeecC-ChH
Confidence 345666666665 88888888887654444322 2211 22456778899999999999999765 688874 689
Q ss_pred hhhhHHHHHHhhhccCCC--CCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccc
Q psy8733 126 GMFAAVAMNLISSSMNVP--NNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVS 203 (621)
Q Consensus 126 ~~~~a~alNlla~~~~~~--~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~ 203 (621)
.++|++.+ +++++ ++|+|++.+. .+ +.|+. -|...|++.|...++.+..
T Consensus 176 Aaaea~~~-----a~~~~~g~~~~VlVs~~----~h---P~~~~----------------v~~t~a~~~GieV~~v~~~- 226 (993)
T PLN02414 176 AAAEAMAM-----CNNILKGKKKKFLIASN----CH---PQTID----------------VCQTRADGLGLEVVVADEK- 226 (993)
T ss_pred HHHHHHHH-----HHhcccCCCCEEEEcCc----cC---HhHHH----------------HHHHhhhhcCCEEEEecch-
Confidence 86665332 33444 4477888764 22 33332 2455667777643332210
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNE 283 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnE 283 (621)
+.+ ..++++ ...++|+-
T Consensus 227 ------------------------------------------------------------~~~--~~~~~v-~~vlvq~P 243 (993)
T PLN02414 227 ------------------------------------------------------------DFD--YSSGDV-CGVLVQYP 243 (993)
T ss_pred ------------------------------------------------------------hhc--cccCce-EEEEEecC
Confidence 000 011122 23458888
Q ss_pred ccccccccc--c---cccCCCcEEEecccccCCCcc-cccccc--eEEeccccccCCCc-----cEEEEEchhHHhhhCC
Q psy8733 284 TVDGVEFNY--I---PDSQGIPLVSDMSSNFLSRKF-DVSKFG--VIIAGAQKNIGPAG-----ITVVIVREDLLEYALP 350 (621)
Q Consensus 284 T~tGv~~p~--i---~~~~g~llvvDavSs~G~~pI-Dv~~~g--vl~asaqK~lGP~G-----lg~livr~~ll~~~~~ 350 (621)
+.+|.+.|+ | ++++|++++| +++.++..++ ++.++| ++++++|||++|.| +|++++|+++...+..
T Consensus 244 ~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~Pg 322 (993)
T PLN02414 244 ATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPG 322 (993)
T ss_pred CCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCC
Confidence 889999996 3 4678999999 8888888888 588887 99999999996666 8999999998654432
Q ss_pred CCCceeecccc-------------ccCC--CccCCchHHHHHHHHHHHHHH-----HhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 351 ITPTVFHFKIN-------------ADNN--SVYNTPPTFVVHVIQRVFAWI-----KRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 351 ~~P~~ld~~~~-------------~~~~--s~~~TP~v~~I~aL~~aL~~i-----~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
.+..+... .+.+ ..-+|.|+-...+|.+++..+ ..+ |++++.+|..+++.++++.|
T Consensus 323 ---riVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~-Gl~~Ia~ri~~la~~l~~~L 398 (993)
T PLN02414 323 ---RIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGVFAAGL 398 (993)
T ss_pred ---cccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHH
Confidence 12222110 0111 123699997777777766533 335 89999999999999999999
Q ss_pred HccC
Q psy8733 411 DNSD 414 (621)
Q Consensus 411 ~~~~ 414 (621)
++.+
T Consensus 399 ~~~G 402 (993)
T PLN02414 399 KKLG 402 (993)
T ss_pred hhcC
Confidence 8754
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-14 Score=155.43 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=86.7
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhcCC-----CCCceeeeee------cccCCCccCCCchhHHHHHHHHHHH
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYALP-----ITPTVFHFKI------NADNNSVYNTPPTFVVHVIQRVFAW 515 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~-----~~p~~~~y~~------~~~~~s~~nTP~~~~iy~~~~vl~~ 515 (621)
++|++|+|+||||| |.|++++++|++++++... .+|.+++|+. +..++||+||||++.||.+.++|+|
T Consensus 175 ~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~ 254 (374)
T TIGR01365 175 KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKW 254 (374)
T ss_pred HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHH
Confidence 48999999999999 9999999999999988553 2567787655 2346799999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhccC
Q psy8733 516 IKRQGGLAKMEQNSLQKSVLLYQEIDNSD 544 (621)
Q Consensus 516 ~~~~gg~~~~~~~~~~ka~~lY~~id~~~ 544 (621)
|+++||++++.+|.+++++++|+++++..
T Consensus 255 i~~egGle~~~~Rh~~~a~~l~~~l~~lg 283 (374)
T TIGR01365 255 AESIGGLKPLIARADDNLAVLEAFVAKNN 283 (374)
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999876
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-11 Score=131.10 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=95.5
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------cccc-ccceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDVS-KFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv~-~~gvl~asaqK~lGP~Glg~ 337 (621)
++++|++.+..+.+|...|+ +++++|+++|+|.++++|... .++. +.+++++|.+|++|+...|+
T Consensus 170 ~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~ 249 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGF 249 (393)
T ss_pred CceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEE
Confidence 78899998888899999885 456899999999999887642 2332 34588899999996445699
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.++++.+.+.+....+ ...+|++...+.++.++++.+. +++.+.++.+++.+++++.|++.
T Consensus 250 ~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~a~~~al~~~~---~~~~~~~~~~~~~~~l~~~L~~~ 312 (393)
T TIGR01822 250 TTARKEVVELLRQRSRPY----------LFSNSLPPAVVGASIKVLEMLE---ASNELRDRLWANTRYFRERMEAA 312 (393)
T ss_pred EEeCHHHHHHHHHhCccc----------eecCCCCHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHc
Confidence 999999887764321111 1124556666777778888763 35778889999999999999876
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.8e-12 Score=135.46 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=96.1
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC---------ccccc-ccceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR---------KFDVS-KFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~---------pIDv~-~~gvl~asaqK~lGP~Glg~ 337 (621)
++++|.+.+..+.+|...|+ +++++|+++|+|.++++|.. .+++. ..|+++.|.+|++|+. +|+
T Consensus 181 ~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~-~G~ 259 (407)
T PRK07179 181 GPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGR-AGI 259 (407)
T ss_pred CCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhcc-CeE
Confidence 46788888888999999996 45688999999999998753 23332 3468889999999864 899
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.++++.+.+..... ......|++...++++.++++++.+. +.+.++.+++.+++++.|.+++
T Consensus 260 l~~~~~~~~~~~~~~~----------~~~~~~t~~~~~~aa~~aal~~~~~~---~~~~~~l~~~~~~l~~~L~~~g 323 (407)
T PRK07179 260 ITCPRELAEYVPFVSY----------PAIFSSTLLPHEIAGLEATLEVIESA---DDRRARLHANARFLREGLSELG 323 (407)
T ss_pred EEeCHHHHHHHHHhCc----------CeeeCCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999888665421110 01123566777888888999988553 5677889999999999998873
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-12 Score=141.30 Aligned_cols=131 Identities=14% Similarity=0.163 Sum_probs=86.3
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccc-----cccceEEecccccc-CCCccEEEEEc
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDV-----SKFGVIIAGAQKNI-GPAGITVVIVR 341 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv-----~~~gvl~asaqK~l-GP~Glg~livr 341 (621)
++++|.+++ +++|...|+ +++++|+++++|+++++|...... +..|++++|.||++ ||.|-.++.-+
T Consensus 168 ~~klVi~~~--~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~GG~v~~~~ 245 (416)
T PRK13034 168 KPKLIIAGF--SAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGGMILTND 245 (416)
T ss_pred CCeEEEECC--CccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCCeEEEECc
Confidence 467776543 567887775 457899999999999988764332 34569999999999 69984444434
Q ss_pred hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 342 EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 342 ~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+++.+++.... +. ....+++...+.++..++..+.+. +..+..++..+++++|++.|.+. |+..
T Consensus 246 ~~~~~~~~~~~-----~~------~~~~~~~~~~~aa~~~al~~~~~~-~~~~~~~~l~~~a~~l~~~L~~~-G~~~ 309 (416)
T PRK13034 246 EEIAKKINSAV-----FP------GLQGGPLMHVIAAKAVAFGEALQP-EFKTYAKQVIANAQALAEVLKER-GYDL 309 (416)
T ss_pred HHHHHHHHhhc-----CC------cccCCccHHHHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHHc-CCEe
Confidence 44444442210 00 111223344556666666666544 45677789999999999999887 4644
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.7e-12 Score=132.66 Aligned_cols=131 Identities=12% Similarity=0.229 Sum_probs=88.0
Q ss_pred CCCCceEEEEecccccccccccc-----cccc--CCCcEEEecccccCCC---cccc-cccc--eEEeccccccCCCc--
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDS--QGIPLVSDMSSNFLSR---KFDV-SKFG--VIIAGAQKNIGPAG-- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~--~g~llvvDavSs~G~~---pIDv-~~~g--vl~asaqK~lGP~G-- 334 (621)
+++++++|++++..|.||...|. +++. +++++++|.+.+-... +++. +..+ +++.|.+|++|++|
T Consensus 139 ~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r 218 (346)
T TIGR01141 139 IDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLR 218 (346)
T ss_pred cCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhh
Confidence 45689999999999999999985 3333 4899999999763221 2222 1122 56677799998777
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+|+++.++++++++.+... .+ +.+.+...+ ++.++...+.++++.++.+++.+++++.|++++
T Consensus 219 ~G~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 281 (346)
T TIGR01141 219 IGYAIANAEIIDALNKVRA-------------PF-NLSRLAQAA---AIAALRDDDFIEKTVEEINAERERLYDGLKKLP 281 (346)
T ss_pred ceeeecCHHHHHHHHhccC-------------CC-CCCHHHHHH---HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999998877643211 11 223333333 344454432377788888888889999998775
Q ss_pred Ccc
Q psy8733 415 KFY 417 (621)
Q Consensus 415 g~~ 417 (621)
|+.
T Consensus 282 g~~ 284 (346)
T TIGR01141 282 GLE 284 (346)
T ss_pred CCE
Confidence 553
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=131.21 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=86.2
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc--ccccc-eEEec--cccccC-CCccEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD--VSKFG-VIIAG--AQKNIG-PAGITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID--v~~~g-vl~as--aqK~lG-P~Glg~l 338 (621)
+++++++|.++| .+|...|+ +++++|+++++|++|++|+...+ +..++ +.++| +||+++ +.| |++
T Consensus 103 i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~~~~~~g-g~~ 178 (352)
T cd00616 103 ITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKNLTTGEG-GAV 178 (352)
T ss_pred cCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCCCcccCc-eEE
Confidence 456889999886 47988885 45689999999999999987543 23333 55555 669995 444 555
Q ss_pred EEc-hhHHhhhCCCC-Ccee-ecc--ccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 339 IVR-EDLLEYALPIT-PTVF-HFK--INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 339 ivr-~~ll~~~~~~~-P~~l-d~~--~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+.+ +++++++.+.. .... +.. .....+..+.++++.... .....+ +++++.++.+++++++++.|.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~------~~~~l~-~~~~~~~~~~~~~~~~~~~L~~~ 251 (352)
T cd00616 179 VTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAI------GLAQLE-KLDEIIARRREIAERYKELLADL 251 (352)
T ss_pred EECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHH------HHHHHH-hhHHHHHHHHHHHHHHHHHhcCC
Confidence 555 57776654311 0000 000 000001112233333333 223333 57888889999999999999998
Q ss_pred CCcccCc
Q psy8733 414 DKFYECP 420 (621)
Q Consensus 414 ~g~~~~~ 420 (621)
+|+....
T Consensus 252 ~g~~~~~ 258 (352)
T cd00616 252 PGIRLPD 258 (352)
T ss_pred CCccCCC
Confidence 8776543
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-11 Score=135.21 Aligned_cols=211 Identities=16% Similarity=0.280 Sum_probs=136.3
Q ss_pred ccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Q psy8733 45 MSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGG 124 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~ggg 124 (621)
++++ ..+|+++.|.+++|++|++++.+.+..|.+.... +....|+ ..++.+++.+++++|+++ .++ + +++
T Consensus 77 inat-g~v~~tNlg~s~l~~~vieAv~~~~~~y~~l~~~-l~~g~~g----~r~~~le~~lA~l~gae~--alv-v-~sg 146 (454)
T TIGR00474 77 INAT-GVVLHTNLGRAPLAEEAIEAVTDAARGYSNLEYD-LETGKRG----SRYSHVEGLLCELTGAED--ALV-V-NNN 146 (454)
T ss_pred eCCC-CcEEeccCCCCCCCHHHHHHHHHHHhcccchhcc-ccccccc----hHHHHHHHHHHHHhCCCc--EEE-E-CCH
Confidence 4555 5689999999999999999999999877532211 1112232 457899999999999975 344 4 456
Q ss_pred chhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccc
Q psy8733 125 TGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSK 204 (621)
Q Consensus 125 T~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~ 204 (621)
+. |++++... +.+||+|+++.+ .+.. . .|.|.-. +.+++.|...+..+..
T Consensus 147 ~a-----Ai~l~l~~--l~~GdeVIvs~~----e~v~-----~----------ggs~~i~--~~~~~~G~~~~~v~~~-- 196 (454)
T TIGR00474 147 AA-----AVLLALNT--LAKGKEVIVSRG----ELVE-----I----------GGSFRIP--DVMEQSGAKLVEVGTT-- 196 (454)
T ss_pred HH-----HHHHHHHH--hCCcCEEEECCC----hhhh-----h----------cchhhHH--HHHHHcCCEEEEeCCC--
Confidence 66 56655433 578999999875 2211 0 1334332 3445667543222100
Q ss_pred ccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccc
Q psy8733 205 YVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 284 (621)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET 284 (621)
. ..+.+. .+ -.++++|++|.++|..+
T Consensus 197 ---------------------------~-----~~~l~d---------------------le-~aI~~~T~lv~~~h~sN 222 (454)
T TIGR00474 197 ---------------------------N-----RTHLKD---------------------YE-DAITENTALLLKVHTSN 222 (454)
T ss_pred ---------------------------C-----CCCHHH---------------------HH-HhcCcCCEEEEEEccCc
Confidence 0 000000 11 13678899999999887
Q ss_pred c--ccc--cccc-----ccccCCCcEEEecccc---------cCCCcc--cccccc--eEEeccccccCCCccEEEEEch
Q psy8733 285 V--DGV--EFNY-----IPDSQGIPLVSDMSSN---------FLSRKF--DVSKFG--VIIAGAQKNIGPAGITVVIVRE 342 (621)
Q Consensus 285 ~--tGv--~~p~-----i~~~~g~llvvDavSs---------~G~~pI--Dv~~~g--vl~asaqK~lGP~Glg~livr~ 342 (621)
. .|. ..|+ +++++|+++++|+++. +++.|. ++.++| ++++|+||++|.+..|+++.++
T Consensus 223 ~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~ 302 (454)
T TIGR00474 223 YRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKK 302 (454)
T ss_pred ccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECH
Confidence 5 464 5564 4568999999998743 234454 444454 9999999999644689999999
Q ss_pred hHHhhhC
Q psy8733 343 DLLEYAL 349 (621)
Q Consensus 343 ~ll~~~~ 349 (621)
++++++.
T Consensus 303 ~~i~~l~ 309 (454)
T TIGR00474 303 ELIERLK 309 (454)
T ss_pred HHHHhhh
Confidence 9987664
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=136.49 Aligned_cols=129 Identities=16% Similarity=0.248 Sum_probs=94.0
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEeccccc-----CCCcccccccc--eEEeccccccC-CCccEE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNF-----LSRKFDVSKFG--VIIAGAQKNIG-PAGITV 337 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~-----G~~pIDv~~~g--vl~asaqK~lG-P~Glg~ 337 (621)
.+++++|.+|+ .|.+|+..|+ +++++|++++||.+++. +..|.+...++ +++.|+||+++ |++.++
T Consensus 152 ~~~~k~v~l~~-p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g~~~~~~ 230 (294)
T cd00615 152 HPDAKAAVITN-PTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPALTQGSM 230 (294)
T ss_pred CCCceEEEEEC-CCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhcccchHhHHHH
Confidence 46789999986 5889999996 45688999999999875 33455555554 99999999995 888888
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+.++++..... .+.... ......||+...+.++..+++++.++ |.+ ..++..++++.+++.|.
T Consensus 231 l~~~~~~~~~~--------~~~~~~-~~~~ttsps~~~~asl~~a~~~~~~~-g~~-~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 231 IHVKGDLVNPD--------RVNEAL-NLHQSTSPSYLILASLDVARAMMALE-GKE-LVEELIELALYARQEIN 293 (294)
T ss_pred HHhCCCcCCHH--------HHHHHH-HHHCCCCcHHHHHHHHHHHHHHHHHH-hHH-HHHHHHHHHHHHHHHHh
Confidence 88876632100 000000 01123589999999999999999776 644 57778889999998775
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-11 Score=143.75 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=152.5
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccCCCC--CceeEeecCCcchhHHHHHHHhhC
Q psy8733 91 SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPN--NYKILFLQGGGTGMFAAVAMNLIG 168 (621)
Q Consensus 91 s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~~~~--gd~Il~~~~~~~~~feav~~NL~~ 168 (621)
|+--.+.+.+.+..+++|+|++.. ++.++ .++|.++|++. .++.+++ +|+|++.+. .+ |.|+.
T Consensus 116 sQG~Leal~~~Qt~la~LtG~~~a-naSl~-d~aTAa~ea~~-----~a~~~~~~~~~~vlv~~~----~h---P~~~~- 180 (954)
T PRK05367 116 SQGRLEALLNFQTMVADLTGLEIA-NASLL-DEATAAAEAMA-----LAKRVSKSKSNRFFVDDD----VH---PQTLD- 180 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChh-hcccc-ccHHHHHHHHH-----HhhhhccCCCCEEEEcCc----cC---HHHHH-
Confidence 556678899999999999999764 67776 46888666533 3445555 488888764 22 33332
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcc
Q psy8733 169 RTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGK 248 (621)
Q Consensus 169 ~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~ 248 (621)
-|...|++.|...++.+..
T Consensus 181 ---------------v~~t~a~~~G~ev~~~~~~---------------------------------------------- 199 (954)
T PRK05367 181 ---------------VLRTRAEPLGIEVVVGDAA---------------------------------------------- 199 (954)
T ss_pred ---------------HHHHHHHhCCCEEEEecCc----------------------------------------------
Confidence 2445667777654332210
Q ss_pred cccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc--c---cccCCCcEEEecccccCCCcccccccc--e
Q psy8733 249 VNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNFLSRKFDVSKFG--V 321 (621)
Q Consensus 249 ~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~G~~pIDv~~~g--v 321 (621)
. + +. +.++ ...++|+.+.+|.+.|+ | ++++|++++||+.+..++...+..++| +
T Consensus 200 --------~------d---~~-~~~~-~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi 260 (954)
T PRK05367 200 --------K------A---LD-HDDV-FGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADI 260 (954)
T ss_pred --------c------C---CC-cccE-EEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCE
Confidence 0 0 00 2233 44578888999999996 3 457899999999886666666888887 9
Q ss_pred EEeccccc-----cCCCccEEEEEchhHHhhhCCCCCce-eeccc--------cc-cC--CCccCCchHHHHHHHHHHH-
Q psy8733 322 IIAGAQKN-----IGPAGITVVIVREDLLEYALPITPTV-FHFKI--------NA-DN--NSVYNTPPTFVVHVIQRVF- 383 (621)
Q Consensus 322 l~asaqK~-----lGP~Glg~livr~~ll~~~~~~~P~~-ld~~~--------~~-~~--~s~~~TP~v~~I~aL~~aL- 383 (621)
+++++||| +|-||+|++++|+++..++.+..-.+ .|... +. +. +..-+|.|+....++.+++
T Consensus 261 ~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a 340 (954)
T PRK05367 261 AVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMA 340 (954)
T ss_pred EEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHH
Confidence 99999999 55337999999999887765421111 01000 00 01 1223577776555544444
Q ss_pred ----HHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 384 ----AWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 384 ----~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.|+..+ |++++.+|...++.++.+.|++. |+.
T Consensus 341 ~~y~~~~g~~-Gl~~Ia~~~~~la~~l~~~L~~~-G~~ 376 (954)
T PRK05367 341 SMYAVYHGPE-GLKAIARRVHRLAAILAAGLRAL-GLE 376 (954)
T ss_pred HHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHhc-Ccc
Confidence 556677 89999999999999999999874 344
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-10 Score=120.99 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=93.0
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc---------cc--ccceEEeccccccCCCcc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD---------VS--KFGVIIAGAQKNIGPAGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID---------v~--~~gvl~asaqK~lGP~Gl 335 (621)
+++++|++++..+.+|...|+ +++++|+++|+|.+++.|..+.+ ++ ..++++.|.+|++|++|
T Consensus 145 ~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g- 223 (360)
T TIGR00858 145 ERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG- 223 (360)
T ss_pred CCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC-
Confidence 357888888888899988885 45688999999999987754322 22 23478899999999988
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|+++.++++.+.+..... .... .+++...+.++.++++++.. .+.+.++.+++.+++++.|++++
T Consensus 224 G~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~l~~~L~~~~ 289 (360)
T TIGR00858 224 AYVAGSQALIDYLINRAR-----------TLIFSTALPPAVAAAALAALELIQE---EPWRREKLLALIARLRAGLEALG 289 (360)
T ss_pred cEEEcCHHHHHHHHHhCc-----------cceecCCCCHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHcC
Confidence 888888888766532111 0111 12344566777888888764 36778899999999999998864
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=125.05 Aligned_cols=293 Identities=14% Similarity=0.167 Sum_probs=201.1
Q ss_pred chhccccccccchhhh-hhccCCCCCceeccCCCCCCCHHHHHHH-HHHHHhhccCCCcccccccc--cHHHHHHHHHHH
Q psy8733 27 LGNIIRNTYLDSRIHT-TAMSSAAHPVINFGAGPAKLPREVLEEV-KETLLDYESTGISVMEMSHR--SADYTKINNDTQ 102 (621)
Q Consensus 27 ~~~~~~~~~~~~~~~~-~~m~~~~~~~~lf~aGPs~~P~~Vlea~-~~~l~~~~~~g~sv~e~shr--s~~f~~i~~~ar 102 (621)
+..-++.|+.++-.+. ..+.....-+||+...-...|+.+..+. +....+|...+. .+|. .+.+.++=+..-
T Consensus 7 ~~~~l~~Da~dpl~~lr~~f~lp~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~li----rsw~~a~~~W~~lp~~lg 82 (407)
T COG3844 7 LAECLALDAADPLAKLRDRFALPGGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLI----RSWNKAKADWFDLPERLG 82 (407)
T ss_pred hHHHhhhcccCchhhhHhhccCCCCeEEeeccccccCchHHHHHHHHHHHHHHHhhhh----hhhcccCCchhhchhHHH
Confidence 3444555555443333 2233333568999988888886665554 444445655432 2343 566788888899
Q ss_pred HHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHH---hhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcC
Q psy8733 103 AALRELLNVPNNYKILFLQGGGTGMFAAVAMNL---ISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTG 179 (621)
Q Consensus 103 ~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNl---la~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG 179 (621)
.+|+-|+|+..+ ||+.+ + +|. +|+ |+..++.++|+.|++.+++ |+- |+
T Consensus 83 dklApLiGA~~~-Evvv~-d-tts------~nl~k~L~aalr~~~~r~vIv~E~~----------~fp----------Td 133 (407)
T COG3844 83 DKLAPLIGARAG-EVVVT-D-TTS------INLFKVLAAALRPQEGRRVIVSEGD----------NFP----------TD 133 (407)
T ss_pred HHhhhhhcCCCC-ceEEe-C-Ccc------hHHHHHHHHHhccCCCceEEeecCC----------CCC----------cc
Confidence 999999999876 78876 3 333 565 4456788899999999873 221 11
Q ss_pred hHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCc
Q psy8733 180 SWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKY 259 (621)
Q Consensus 180 ~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~ 259 (621)
.|- +.-.|+-.+.-. + ++.+. +|++
T Consensus 134 ly~--a~g~~~~~~~~~----------------------~--------~~~~~-------~P~~---------------- 158 (407)
T COG3844 134 LYI--AEGLADLLGIGY----------------------D--------LEGVI-------APRA---------------- 158 (407)
T ss_pred hhh--hcchhhhhcccc----------------------c--------ceeee-------ChHH----------------
Confidence 121 111222222100 0 00000 0111
Q ss_pred cCCCCccccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc--
Q psy8733 260 VSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-- 330 (621)
Q Consensus 260 ~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-- 330 (621)
+ +-.+++++.+|+++|+..-||-..++ +++++|++++-|-+-|.|..|+|+..+| |.+.++||.|
T Consensus 159 --~----~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNg 232 (407)
T COG3844 159 --L----EEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNG 232 (407)
T ss_pred --H----HHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccC
Confidence 0 11367789999999999999999996 4578999999999999999999999997 9999999999
Q ss_pred CCCccEEEEEchhHHhhhCCCCCceeeccc------ccc-----CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy8733 331 GPAGITVVIVREDLLEYALPITPTVFHFKI------NAD-----NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 399 (621)
Q Consensus 331 GP~Glg~livr~~ll~~~~~~~P~~ld~~~------~~~-----~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~ 399 (621)
||-+.+++++.++..++..+....++.-.. ..+ .+..-+||++....++..+|+...+. ++.++.++.
T Consensus 233 GPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~-~i~~lR~kS 311 (407)
T COG3844 233 GPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADV-DITELRKKS 311 (407)
T ss_pred CCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhc-CHHHHHHhh
Confidence 499999999999998876554333321110 001 12234799999999999999999999 799999999
Q ss_pred HHHHHHHHHHHHccC
Q psy8733 400 LQKSVLLYQEIDNSD 414 (621)
Q Consensus 400 ~~la~~L~e~L~~~~ 414 (621)
..++.++.+-+++.-
T Consensus 312 laLTd~fieLvEa~~ 326 (407)
T COG3844 312 LALTDYFIELVEARC 326 (407)
T ss_pred hHHHHHHHHHHHhcc
Confidence 999999999998753
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-11 Score=132.57 Aligned_cols=210 Identities=14% Similarity=0.243 Sum_probs=134.7
Q ss_pred ccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Q psy8733 45 MSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGG 124 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~ggg 124 (621)
++++ ..+|+.+.|-+++|++|++++.+.+.+|.+..... ....|+ +.++.+++.+++++|+++ .+++ ++|
T Consensus 82 inat-g~v~~tNlg~s~l~~~v~eav~~~~~~~~~le~~l-~~g~~g----~r~~~~e~~lA~l~Gae~---a~vv-~sg 151 (464)
T PRK04311 82 INAT-GVVLHTNLGRALLSEAAIEAVTEAARGYSNLEYDL-ATGKRG----SRDRALAALLCALTGAED---ALVV-NNN 151 (464)
T ss_pred ecCC-ccEEeccCCCCCCCHHHHHHHHHHHhcccccccch-hhcccc----hHHHHHHHHHHHHhCCCe---EEEE-CCH
Confidence 4555 66889999999999999999999987664322111 112232 457889999999999974 4555 456
Q ss_pred chhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccc
Q psy8733 125 TGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSK 204 (621)
Q Consensus 125 T~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~ 204 (621)
+. |++++..+ +++||+|+++.+ ++ .+- .|.|.- .+.+++.|...+..+..
T Consensus 152 ta-----Al~l~l~~--l~~GdeVIvs~~----e~-------~~~--------ggs~~i--~~~~~~~G~~l~~v~~~-- 201 (464)
T PRK04311 152 AA-----AVLLALNA--LAAGKEVIVSRG----EL-------VEI--------GGAFRI--PDVMRQAGARLVEVGTT-- 201 (464)
T ss_pred HH-----HHHHHHHH--hCCCCEEEEcch----hh-------hhc--------Ccchhh--HHHHHHCCcEEEEECCC--
Confidence 66 56665544 579999998864 22 110 133432 23446667543222100
Q ss_pred ccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccc
Q psy8733 205 YVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 284 (621)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET 284 (621)
...+++. .+ -.++++|++|.++|..+
T Consensus 202 --------------------------------~~t~~~d---------------------le-~aI~~~TklV~~vh~sN 227 (464)
T PRK04311 202 --------------------------------NRTHLRD---------------------YE-QAINENTALLLKVHTSN 227 (464)
T ss_pred --------------------------------CCCCHHH---------------------HH-HhcCccCeEEEEEcCCC
Confidence 0000001 11 13678899999999887
Q ss_pred c--ccc--cccc-----ccccCCCcEEEeccccc---------CCCcccccc---c--ceEEeccccccCCCccEEEEEc
Q psy8733 285 V--DGV--EFNY-----IPDSQGIPLVSDMSSNF---------LSRKFDVSK---F--GVIIAGAQKNIGPAGITVVIVR 341 (621)
Q Consensus 285 ~--tGv--~~p~-----i~~~~g~llvvDavSs~---------G~~pIDv~~---~--gvl~asaqK~lGP~Glg~livr 341 (621)
. +|. ..|+ +++++|+++++|+.+.. ++.| ++.+ + |++++|+||++|.+..|+++.+
T Consensus 228 ~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p-~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~ 306 (464)
T PRK04311 228 YRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEP-TVQELLAAGVDLVTFSGDKLLGGPQAGIIVGK 306 (464)
T ss_pred ccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCC-chhhHHhcCCcEEEecCcccccCCceEEEEEc
Confidence 4 564 4454 45689999999995432 1344 4433 4 4999999999974468999999
Q ss_pred hhHHhhhC
Q psy8733 342 EDLLEYAL 349 (621)
Q Consensus 342 ~~ll~~~~ 349 (621)
+++++++.
T Consensus 307 ~~li~~l~ 314 (464)
T PRK04311 307 KELIARLK 314 (464)
T ss_pred HHHHHHHh
Confidence 99988764
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-12 Score=139.72 Aligned_cols=102 Identities=58% Similarity=0.978 Sum_probs=94.8
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++++|+||++||.|++++++|++++++..+.+|.+++|....+++++++|||+..||.++..|+|+++.||+++++++
T Consensus 176 ~d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r 255 (349)
T TIGR01364 176 FGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKR 255 (349)
T ss_pred ccEEEEecccccCCCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67999999999999999999999999999888889999887777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCccccc
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECP 550 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~ 550 (621)
.++.++.+++.+++.++||...
T Consensus 256 ~~~l~~~l~~~l~~~~gl~~~~ 277 (349)
T TIGR01364 256 NQAKAQLLYDTIDNSNGFYRNP 277 (349)
T ss_pred HHHHHHHHHHHHHhCCCeeccC
Confidence 9999999999999998765554
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=114.79 Aligned_cols=72 Identities=28% Similarity=0.303 Sum_probs=61.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc---ccccc--ceEEeccccccCCCccEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF---DVSKF--GVIIAGAQKNIGPAGITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI---Dv~~~--gvl~asaqK~lGP~Glg~li 339 (621)
..++++++.+++.++.+|...|. +++++++++++|++++.+..+. +.... |+++.|.||++|++|.|+++
T Consensus 89 ~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~G~l~ 168 (170)
T cd01494 89 AKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVI 168 (170)
T ss_pred ccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccccCCCceEEEE
Confidence 45689999999999999999874 4468899999999999999886 45544 49999999999889999999
Q ss_pred Ec
Q psy8733 340 VR 341 (621)
Q Consensus 340 vr 341 (621)
+|
T Consensus 169 ~~ 170 (170)
T cd01494 169 VK 170 (170)
T ss_pred eC
Confidence 86
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.2e-10 Score=120.10 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=79.5
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccc---cCCCcc-cccc-cceEEeccccccCCCc--
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN---FLSRKF-DVSK-FGVIIAGAQKNIGPAG-- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs---~G~~pI-Dv~~-~gvl~asaqK~lGP~G-- 334 (621)
+++++++|++++..|.||...+. +++++|+++|+|.++. .+..++ .++. -.+.+.|..|++|++|
T Consensus 154 ~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 233 (380)
T PRK06225 154 MDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLR 233 (380)
T ss_pred cCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccce
Confidence 45678999999888899998762 3457899999999863 222221 1221 1255566679999999
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+|+++.++++.+++.+. . ...+++ +....++...+++...+. ++.+.+..+++.+.+++.|++++
T Consensus 234 iG~i~~~~~l~~~~~~~-------~-----~~~~~~-~~~~~~~a~~~l~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~ 298 (380)
T PRK06225 234 IGAVVATPDLIEVVKSI-------V-----INDLGT-NVIAQEAAIAGLKVKDEW--IDRIRRTTFKNQKLIKEAVDEIE 298 (380)
T ss_pred eEEEecCHHHHHHHHHH-------H-----hcccCC-CHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHhCc
Confidence 69999999988765321 0 011222 333333333444322111 34445555566677778887765
Q ss_pred C
Q psy8733 415 K 415 (621)
Q Consensus 415 g 415 (621)
|
T Consensus 299 ~ 299 (380)
T PRK06225 299 G 299 (380)
T ss_pred C
Confidence 4
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-12 Score=137.97 Aligned_cols=103 Identities=59% Similarity=0.985 Sum_probs=94.8
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|+.|+|+||.+||.|++++++|++++++..+..|.+++|..+.++.++++|||+.+||.+...|+|+.+.||++.++++
T Consensus 184 ~~~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~ 263 (355)
T cd00611 184 FGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKR 263 (355)
T ss_pred hCEEEeecccccCCCceEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56788999999999999999999999999888889998888777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcccccC
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPV 551 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v 551 (621)
.++.++.+|+.+++.++||..+.
T Consensus 264 ~~~l~~~l~~~l~~~~gl~~~~~ 286 (355)
T cd00611 264 NRQKAQLLYDTIDNSNGFYRGPV 286 (355)
T ss_pred HHHHHHHHHHHHHhCccccccCC
Confidence 99999999999999988765543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=143.59 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=101.0
Q ss_pred CCceEEEEecccccccccccc--c---cccCCCcEEEecccccCC-Ccccccccc--eEEeccccccC-CC-----ccEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNFLS-RKFDVSKFG--VIIAGAQKNIG-PA-----GITV 337 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~G~-~pIDv~~~g--vl~asaqK~lG-P~-----Glg~ 337 (621)
+++++|.++|.+|.+|+..|+ | ++++|+++++|++|..+. ..++..++| +++++.||+|+ |. |+|+
T Consensus 665 ~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~ 744 (993)
T PLN02414 665 DNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGP 744 (993)
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeee
Confidence 478999999999999999986 3 468899999999999998 666777776 99999999773 55 5999
Q ss_pred EEEchhHHhhhCCCCCcee-----eccccccCCCccCCch---HHHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHHH
Q psy8733 338 VIVREDLLEYALPITPTVF-----HFKINADNNSVYNTPP---TFVVHVIQRVFAWIKRQG--GLAKMEQNSLQKSVLLY 407 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~l-----d~~~~~~~~s~~~TP~---v~~I~aL~~aL~~i~~~g--Gl~~i~~r~~~la~~L~ 407 (621)
+++++.+...+ |... .+.. .+..+..+|-+ +....++-.|+.|+...| |+.+..++...++.++.
T Consensus 745 l~~~~~L~p~l----Pg~~v~~~~~~~~-r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~ 819 (993)
T PLN02414 745 IGVKKHLAPFL----PSHPVVPTGGIPR-PEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMA 819 (993)
T ss_pred EEEchhhcccC----CCCccccCCCccc-ccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHH
Confidence 99999775443 3211 0000 01112234533 344477788888888763 46666999999999999
Q ss_pred HHHHc
Q psy8733 408 QEIDN 412 (621)
Q Consensus 408 e~L~~ 412 (621)
+.|.+
T Consensus 820 ~rL~~ 824 (993)
T PLN02414 820 KRLEG 824 (993)
T ss_pred HHHHh
Confidence 99976
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.1e-11 Score=133.20 Aligned_cols=283 Identities=14% Similarity=0.112 Sum_probs=168.3
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHH-HHHHHHHHHHHHHhCCCC-CC--EEEEEcCCcc
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYT-KINNDTQAALRELLNVPN-NY--KILFLQGGGT 125 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~-~i~~~ar~~La~Ll~~p~-~y--eI~f~~gggT 125 (621)
.+...+.|.---+++.|++++...+.+-...|..- ...+-+-++. ++-.-+.++.+++|+++. .+ +|- +-||+
T Consensus 148 ~~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG-~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQ--p~SGs 224 (586)
T PLN02271 148 FKGIELIASENFVCRAVMEALGSHLTNKYSEGMPG-ARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQ--PYSCT 224 (586)
T ss_pred hcCeeeccccccCCHHHHHHhcCcccccCCCCCCC-CcCCCCChhHHHHHHHHHHHHHHHhCCccccccccee--eccHH
Confidence 46789999999999999999999988865555431 1222344444 455667889999999864 11 343 33677
Q ss_pred hhhhHHHHHHhhh-ccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHH----HHHHHhCCceeeec
Q psy8733 126 GMFAAVAMNLISS-SMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAA----AEAEKYGKVNLVIP 200 (621)
Q Consensus 126 ~~~~a~alNlla~-~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~----~~a~~~G~~~~~~~ 200 (621)
-+ |+.+. ++ +++||+|+.+.. +.| |+.+|... ..+...|.-..+.+
T Consensus 225 ~A------N~aV~~AL-l~PGD~IL~ldl--------------~~G--------GHlshg~~~~~g~~vs~sG~~~~~vp 275 (586)
T PLN02271 225 SA------NFAVYTGL-LLPGDRIMGLDS--------------PSG--------GHMSHGYYTPGGKKVSGASIFFESLP 275 (586)
T ss_pred HH------HHHHHHHh-cCCCCEEEEecC--------------CCC--------CchhcccccccccccccccceEEEEE
Confidence 63 33332 33 677887777642 222 22222110 01112222111111
Q ss_pred ccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEe
Q psy8733 201 KVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYC 280 (621)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~t 280 (621)
|. ++.+.+ -+|.++ .++.....++|+|.+.
T Consensus 276 ------------------------Y~----~d~~~g-~IDyd~---------------------lek~a~~~rPKLII~g 305 (586)
T PLN02271 276 ------------------------YK----VNPQTG-YIDYDK---------------------LEEKALDFRPKILICG 305 (586)
T ss_pred ------------------------cc----cccccC-ccCHHH---------------------HHHHhhhcCCeEEEEC
Confidence 00 000000 011111 1222356789999987
Q ss_pred cccccccccccc-----ccccCCCcEEEecccccCCCccc-----ccccceEEecccccc-CCCccEEEEEchhHHhhhC
Q psy8733 281 DNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD-----VSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYAL 349 (621)
Q Consensus 281 hnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID-----v~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~ 349 (621)
+...+ ...|+ ++++.|+++++|++|.+|..+.+ +...|++++++|||| ||.| |+++++++......
T Consensus 306 ~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~~~~~ 382 (586)
T PLN02271 306 GSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPKLRKQ 382 (586)
T ss_pred chhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEeccccccccc
Confidence 76665 34443 56688999999999999998665 445679999999999 8999 88888877543222
Q ss_pred CCCCce------eeccccccC---CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 350 PITPTV------FHFKINADN---NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 350 ~~~P~~------ld~~~~~~~---~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+...++ -++....+. +..-+.|-...|++++.+|+++... ......++..+.++.|-+.|.+.+ +.+.
T Consensus 383 g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~-efk~Ya~QVv~NAkaLA~~L~~~G-~~vv 459 (586)
T PLN02271 383 GMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATP-EYKAYMQQVKKNAQALASALLRRK-CRLV 459 (586)
T ss_pred CCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHCC-CeEe
Confidence 211110 011111111 2333445555599999999998765 457788888888888888888764 5543
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-09 Score=116.51 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=91.7
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------cccc-ccceEEeccccccCCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDVS-KFGVIIAGAQKNIGPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv~-~~gvl~asaqK~lGP~Glg 336 (621)
+++++|.+.+..+.+|...|+ +++++|+++|+|.+++.|..+ ++++ +.++++.|.+|++|.+| |
T Consensus 162 ~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-G 240 (385)
T TIGR01825 162 YGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG-G 240 (385)
T ss_pred CCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC-C
Confidence 568899999888999998885 456899999999999876432 3443 22388899999999777 8
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++++.+..... ....+ +++....+++.++++.+.+. .+..++..++.+++++.|.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~~l~~~L~~~g 305 (385)
T TIGR01825 241 YAAGHKELIEYLKNRAR-----------PFLFSTAQPPAVVAALAAAVDELQRS---PELMERLWDNTRFFKAGLGKLG 305 (385)
T ss_pred EEecCHHHHHHHHHhCc-----------cccccCCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888876532111 01122 23445678888889887654 2456666778889999998763
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.4e-10 Score=120.48 Aligned_cols=129 Identities=12% Similarity=0.148 Sum_probs=91.8
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-c--------ccc-cccceEEeccccccCCCcc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-K--------FDV-SKFGVIIAGAQKNIGPAGI 335 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-p--------IDv-~~~gvl~asaqK~lGP~Gl 335 (621)
++++++|.+++..+.+|...|+ +++++++++++|.++++|.. + .++ ++.++++.+..|++|.+|
T Consensus 176 ~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G- 254 (410)
T PRK13392 176 PDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG- 254 (410)
T ss_pred CCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc-
Confidence 3578999999999999999985 45678999999999996542 1 111 234678889999999777
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|+++.++++++.+....+. ..+. ++|....+++.++|+.+... + ...++..++.+++++.|++++
T Consensus 255 G~~~~~~~~~~~l~~~~~~-----------~~~s~~~~~~~~~a~~aaL~~~~~~-~--~~~~~~~~~~~~l~~~L~~~g 320 (410)
T PRK13392 255 GYIAASADLIDFVRSFAPG-----------FIFTTALPPAVAAGATAAIRHLKTS-Q--TERDAHQDRVAALKAKLNANG 320 (410)
T ss_pred chhhcCHHHHHHHHHhCcc-----------hhccCcCCHHHHHHHHHHHHHHhcC-H--HHHHHHHHHHHHHHHHHHHcC
Confidence 7888888887755332111 1122 23335678888899987654 2 344667778889999998864
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-09 Score=115.82 Aligned_cols=128 Identities=12% Similarity=0.121 Sum_probs=89.2
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------cccccc-c-eEEeccccccCCCccE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDVSKF-G-VIIAGAQKNIGPAGIT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv~~~-g-vl~asaqK~lGP~Glg 336 (621)
++.++.+.+.-+.+|...++ +++++|+++|+|.+++.|..+ .+++.. + +++.|.+|++|++| |
T Consensus 168 ~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-g 246 (385)
T PRK05958 168 GRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG-A 246 (385)
T ss_pred CCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC-c
Confidence 35667777777888988875 456899999999999876432 123322 3 77889999999888 8
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++.+.+......+ .....++...+.++.++++++.+ . +.+.++..++.+++++.|.+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~aa~~aal~~~~~--~-~~~~~~~~~~~~~l~~~L~~~~ 311 (385)
T PRK05958 247 AVLGSETLIDYLINRARPF----------IFTTALPPAQAAAARAALRILRR--E-PERRERLAALIARLRAGLRALG 311 (385)
T ss_pred EEEcCHHHHHHHHHhCccc----------eecCCCCHHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHHcC
Confidence 8888888766542211000 01122444566777788988865 2 6778899999999999998764
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-10 Score=119.76 Aligned_cols=131 Identities=15% Similarity=0.221 Sum_probs=99.0
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----c---ccccccc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----K---FDVSKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----p---IDv~~~g--vl~asaqK~lGP 332 (621)
.++++++|.+++..+.+|+..|. +++++|+++++|.+++.+.. + ...+.++ +++.|.+|++|.
T Consensus 129 ~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~ 208 (350)
T cd00609 129 KTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGL 208 (350)
T ss_pred cCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCC
Confidence 56789999999999999999884 34688999999999886432 1 2344444 778899999973
Q ss_pred --CccEEEEEch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 333 --AGITVVIVRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 --~Glg~livr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.++|+++.++ ++.+.+... ......+++....+++..+++... . +++++.++..++++++.+.
T Consensus 209 ~g~~~G~i~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~l~~~ 274 (350)
T cd00609 209 PGLRIGYLIAPPEELLERLKKL------------LPYTTSGPSTLSQAAAAAALDDGE-E-HLEELRERYRRRRDALLEA 274 (350)
T ss_pred cccceEEEecCHHHHHHHHHHH------------HHhcccCCChHHHHHHHHHHhCcH-H-HHHHHHHHHHHHHHHHHHH
Confidence 4589999999 666554210 012245777888888888877665 3 6889999999999999999
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|++++
T Consensus 275 L~~~~ 279 (350)
T cd00609 275 LKELG 279 (350)
T ss_pred HHhcC
Confidence 99876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-10 Score=125.76 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=106.7
Q ss_pred CceEEEEe--cccccccccccc-----ccccCCCcEEEecccccCCCccc-----cc---ccceEEecccccc-CCCccE
Q psy8733 273 EASYLYYC--DNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD-----VS---KFGVIIAGAQKNI-GPAGIT 336 (621)
Q Consensus 273 ~t~~V~~t--hnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID-----v~---~~gvl~asaqK~l-GP~Glg 336 (621)
+++.++++ ++.|.+|...|+ +++++|+.++|||+++.+....+ ++ ..|.+.+++|||+ +|.|.|
T Consensus 263 g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G 342 (522)
T TIGR03799 263 NIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAG 342 (522)
T ss_pred CCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccE
Confidence 45555555 678899999997 45689999999999998887766 44 3479999999988 599999
Q ss_pred EEEEchh-HHhhhCCCCCceeeccc--cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 337 VVIVRED-LLEYALPITPTVFHFKI--NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 337 ~livr~~-ll~~~~~~~P~~ld~~~--~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++++|++ +++.+.+ .+.|+.... .....+..+|.+-.. ..+..+|+++... |++.+.++..++++++++.|++.
T Consensus 343 ~llvr~~~~~~~~~~-~~~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~lG~~-G~~~ii~~~~~la~~l~~~L~~~ 419 (522)
T TIGR03799 343 MVLFKDPALMSAIEH-HAEYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHIIGRK-GYELLIDQSIEKAKYFADLIQQQ 419 (522)
T ss_pred EEEEeCHHHHHHhcc-CcchhcCCCCCccccceeecCcchHH-HHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999864 4444433 233431111 011112234444333 4689999999888 89999999999999999999999
Q ss_pred CCcccCc
Q psy8733 414 DKFYECP 420 (621)
Q Consensus 414 ~g~~~~~ 420 (621)
++|.+..
T Consensus 420 ~~~el~~ 426 (522)
T TIGR03799 420 PDFELVT 426 (522)
T ss_pred CCeEEec
Confidence 8887654
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-12 Score=136.35 Aligned_cols=100 Identities=59% Similarity=1.015 Sum_probs=92.1
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++++|+||++||.|++++++|++++++..+.+|.+++|....+++++++|||+..||.++..|+|+.+.||++.+.++
T Consensus 187 ~d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r 266 (360)
T PRK05355 187 FGLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKR 266 (360)
T ss_pred ccEEEEeccccccCCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 57999999999999999999999999999776568899998878889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcccc
Q psy8733 529 SLQKSVLLYQEIDNSDKFYEC 549 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~ 549 (621)
.++.++.+++.+++.+ +|.+
T Consensus 267 ~~~l~~~l~~~l~~~~-~~~~ 286 (360)
T PRK05355 267 NQEKAALLYDAIDSSD-FYRN 286 (360)
T ss_pred HHHHHHHHHHHHHhCC-Cccc
Confidence 9999999999999876 5544
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-09 Score=117.46 Aligned_cols=127 Identities=12% Similarity=0.157 Sum_probs=83.6
Q ss_pred CCCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCC------Ccccccc-cc--eEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLS------RKFDVSK-FG--VIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~------~pIDv~~-~g--vl~asaqK~lGP~ 333 (621)
+++++++|++++..+.||...+. +.+ .+++++|+|.+..... .++++-+ .+ +++.|--|.+|.+
T Consensus 151 ~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 230 (367)
T PRK02731 151 VTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLA 230 (367)
T ss_pred hCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCc
Confidence 45678999999999999999985 232 2489999999865322 1122211 12 6666777999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++.++++.+++..... .++. +.....+ +++++.+..-++.+.++.+++.+.+++.|+
T Consensus 231 G~RiG~l~~~~~~~~~l~~~~~-------------~~~~-~~~~~~~---a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 293 (367)
T PRK02731 231 GLRVGYGIAPPEIIDALNRVRQ-------------PFNV-NSLALAA---AVAALDDDAFVEKSRALNAEGMAWLTEFLA 293 (367)
T ss_pred ccceeeeeCCHHHHHHHHHccC-------------CCCC-CHHHHHH---HHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 4999999998876643211 1111 2233333 344444332367778888888888999888
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
+.
T Consensus 294 ~~ 295 (367)
T PRK02731 294 EL 295 (367)
T ss_pred HC
Confidence 76
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=127.97 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEE
Q psy8733 96 KINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADY 175 (621)
Q Consensus 96 ~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~ 175 (621)
...++.++.++++.|++. .+|+ +|||. |+|++..++ +++||+|+++.. .|.+ ..+++
T Consensus 64 p~~~~le~~lA~l~g~~~---av~~-sSGt~-----Al~~al~~l-l~~Gd~Vi~~~~----~y~~-t~~~~-------- 120 (433)
T PRK08134 64 PTVAVLEERVAALEGGVG---AIAT-ASGQA-----ALHLAIATL-MGAGSHIVASSA----LYGG-SHNLL-------- 120 (433)
T ss_pred hHHHHHHHHHHHHhCCCc---EEEe-CCHHH-----HHHHHHHHH-hCCCCEEEEeCC----ccHH-HHHHH--------
Confidence 468889999999999864 4555 67888 677766555 778888877653 2321 11221
Q ss_pred EEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhccccccccc
Q psy8733 176 VVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPK 255 (621)
Q Consensus 176 v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~ 255 (621)
...++++|......+. + +++++
T Consensus 121 ----------~~~l~~~Gi~v~~vd~------------------------------~-------d~~~l----------- 142 (433)
T PRK08134 121 ----------HYTLRRFGIETTFVKP------------------------------G-------DIDGW----------- 142 (433)
T ss_pred ----------HHHHhhCCeEEEEECC------------------------------C-------CHHHH-----------
Confidence 1123556653322110 0 11111
Q ss_pred CCCccCCCCccccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEecccc
Q psy8733 256 VSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQK 328 (621)
Q Consensus 256 ~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK 328 (621)
+-.++++|++|++.|..+.+|...|+ +++++|+++|+|++|+.+....++ ++ |+++.|+||
T Consensus 143 -----------~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl-~~GaD~vv~S~tK 210 (433)
T PRK08134 143 -----------RAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF-EHGADLVYHSATK 210 (433)
T ss_pred -----------HHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCEEEecccc
Confidence 01367889999999999999999996 456899999999999998877666 45 499999999
Q ss_pred ccCCCc--cEEEEEc
Q psy8733 329 NIGPAG--ITVVIVR 341 (621)
Q Consensus 329 ~lGP~G--lg~livr 341 (621)
++||+| +|.+++.
T Consensus 211 ~l~g~g~~~gG~v~~ 225 (433)
T PRK08134 211 FLGGHGTAIGGVLVD 225 (433)
T ss_pred ccCCCCCceEEEEEe
Confidence 999888 6777664
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-09 Score=112.46 Aligned_cols=133 Identities=12% Similarity=0.078 Sum_probs=87.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCc--------cccccc-c--eEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK--------FDVSKF-G--VIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p--------IDv~~~-g--vl~asaqK~l 330 (621)
+++++++|.+++..|.||...+. +++++++++|+|.+.+..... +++.+. + +++.|-.|.+
T Consensus 155 ~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 234 (382)
T PRK06108 155 ITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNW 234 (382)
T ss_pred cCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhc
Confidence 34678999999999999998863 345789999999886543211 333322 2 7788999999
Q ss_pred CCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 331 GPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 331 GP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
|.+| +|+++.++++++++.... . ....+ ++.....+...+|+.-.+ -++++.++.+++.+.+++
T Consensus 235 g~~G~RiG~~~~~~~~~~~~~~~~----~-------~~~~~-~~~~~q~a~~~~l~~~~~--~~~~~~~~~~~~~~~l~~ 300 (382)
T PRK06108 235 AMTGWRLGWLVAPPALGQVLEKLI----E-------YNTSC-VAQFVQRAAVAALDEGED--FVAELVARLRRSRDHLVD 300 (382)
T ss_pred cCcccceeeeeCCHHHHHHHHHHH----H-------hcccC-CChHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHH
Confidence 9778 799999999887653210 0 01122 233333333334332111 256777888888888999
Q ss_pred HHHccCCc
Q psy8733 409 EIDNSDKF 416 (621)
Q Consensus 409 ~L~~~~g~ 416 (621)
.|++++|+
T Consensus 301 ~L~~~~~~ 308 (382)
T PRK06108 301 ALRALPGV 308 (382)
T ss_pred HHHhCCCC
Confidence 98877544
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.1e-10 Score=116.71 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=77.6
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEeccc------ccCCCcccc--cccceEEeccccccCCCcc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSS------NFLSRKFDV--SKFGVIIAGAQKNIGPAGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavS------s~G~~pIDv--~~~gvl~asaqK~lGP~Gl 335 (621)
+++++|++|+..+. |...+. +++++|+++++|.+. +.|. +++. ...++++.|.||++|.+|-
T Consensus 126 ~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~-~~~~~~~~~d~~~~s~sK~~~~~~g 203 (338)
T cd06502 126 PPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGV-ALKTYKSGVDSVSFCLSKGGGAPVG 203 (338)
T ss_pred CcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC-CHHHHHhcCCEEEEeccccCCCccc
Confidence 36889999987775 544342 235689999999853 2332 3221 2345888899999996665
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++++.++++++++.+..+.+ .++.....+ ...+++..+.. ++...+.++..++++++++.|++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~a~~~~L~~-~~~~~~~~~~~~~~~~l~~~L~~~~ 268 (338)
T cd06502 204 AVVVGNRDFIARARRRRKQA------------GGGMRQSGF-LAAAGLAALEN-DLWLRRLRHDHEMARRLAEALEELG 268 (338)
T ss_pred eEEECCHHHHHHHHHHHHHh------------CCChhhHHH-HHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56677888887764311100 011111111 11223333333 2566677888888999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-08 Score=114.64 Aligned_cols=128 Identities=13% Similarity=0.161 Sum_probs=88.5
Q ss_pred eEE-EEecccccccccccc-----ccccCCCcEEEecccccCCC-----------cccccccceEEeccccccCCCccEE
Q psy8733 275 SYL-YYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-----------KFDVSKFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 275 ~~V-~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-----------pIDv~~~gvl~asaqK~lGP~Glg~ 337 (621)
+.+ .+.++-+.+|...++ +++++++++++|-++++|.. .++.++.++++.|.+|.+|+.| |+
T Consensus 241 k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G-G~ 319 (489)
T PLN02483 241 KIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG-GY 319 (489)
T ss_pred eEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc-eE
Confidence 544 444455777888875 45689999999999997642 2222344689999999999888 99
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHcc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGG---LAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gG---l~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.++++++.+....+. ..+ .+++...+.++.++|+++....| ..++.++.+++.+++++.|.++
T Consensus 320 i~~~~~li~~l~~~~~~-----------~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~ 388 (489)
T PLN02483 320 IAGSKELIQYLKRTCPA-----------HLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM 388 (489)
T ss_pred EEcCHHHHHHHHHhCcc-----------ccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC
Confidence 99999998876432211 122 23344455567788998874322 2445677888899999999987
Q ss_pred C
Q psy8733 414 D 414 (621)
Q Consensus 414 ~ 414 (621)
+
T Consensus 389 G 389 (489)
T PLN02483 389 G 389 (489)
T ss_pred C
Confidence 4
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.6e-09 Score=111.38 Aligned_cols=128 Identities=10% Similarity=0.086 Sum_probs=91.0
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc---------ccc-ccceEEecccccc-CCCccE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF---------DVS-KFGVIIAGAQKNI-GPAGIT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI---------Dv~-~~gvl~asaqK~l-GP~Glg 336 (621)
++++|...++.+.+|...+. +++++++++|+|.++++|.... ++. +.+++++|.+|++ |+. .|
T Consensus 174 ~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~G 252 (397)
T PRK06939 174 RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-GG 252 (397)
T ss_pred CCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-ce
Confidence 67888888778888987774 4568999999999997654321 222 2358889999999 565 59
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++++.+...... ....+|++...++++.++++++.+ .+.+.++.+++.+++++.|++++
T Consensus 253 ~v~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~~l~~~L~~~~ 317 (397)
T PRK06939 253 YTAGRKEVIDWLRQRSRP----------YLFSNSLAPAIVAASIKVLELLEE---SDELRDRLWENARYFREGMTAAG 317 (397)
T ss_pred EEEeCHHHHHHHHHhCcc----------ccccCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999988776431110 011234455556777788888854 25778888899999999998763
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=118.50 Aligned_cols=245 Identities=14% Similarity=0.148 Sum_probs=147.6
Q ss_pred CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccC
Q psy8733 62 LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMN 141 (621)
Q Consensus 62 ~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~ 141 (621)
++++-++++.+.+.. |. .. .+ ....+.++.+++++|++. ++++ +|||. |++++...++
T Consensus 12 ~~~~e~~~~~~~l~~----~~----~~-~g----~~~~~le~~la~~~g~~~---~v~~-~sgt~-----al~lal~al~ 69 (379)
T PRK11658 12 MGDEELAAVKEVLRS----GW----IT-TG----PKNQALEQAFCQLTGNQH---AIAV-SSATA-----GMHITLMALG 69 (379)
T ss_pred CCHHHHHHHHHHHHc----CC----cc-CC----HhHHHHHHHHHHHhCCCe---EEEE-CCHHH-----HHHHHHHHcC
Confidence 456667888876632 10 01 12 247788999999999863 5655 67888 6666666667
Q ss_pred CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCcc
Q psy8733 142 VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221 (621)
Q Consensus 142 ~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (621)
+++||+|++... .|.+. ...+...|...+..+.. +
T Consensus 70 ~~~Gd~Viv~~~----~~~~~-----------------------~~~~~~~G~~~v~vd~~----------~-------- 104 (379)
T PRK11658 70 IGPGDEVITPSL----TWVST-----------------------LNMIVLLGATPVMVDVD----------R-------- 104 (379)
T ss_pred CCCCCEEEECCC----cHHHH-----------------------HHHHHHcCCEEEEEecC----------C--------
Confidence 788888887653 22211 11234456543333210 0
Q ss_pred ccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc-----cccc
Q psy8733 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDS 296 (621)
Q Consensus 222 ~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~ 296 (621)
..| .++++.+ + -.+++++++|..+|. +|...|+ ++++
T Consensus 105 -----------~~~--~~d~~~l---------------------~-~~i~~~tkav~~~~~---~G~~~d~~~i~~~a~~ 146 (379)
T PRK11658 105 -----------DTL--MVTPEAI---------------------E-AAITPRTKAIIPVHY---AGAPADLDAIRAIGER 146 (379)
T ss_pred -----------CcC--CcCHHHH---------------------H-HhcccCCeEEEEeCC---CCCcCCHHHHHHHHHH
Confidence 000 0111221 1 135678998887764 7998885 4568
Q ss_pred CCCcEEEecccccCCCcc--cccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCCC--Cceee---ccccccC--
Q psy8733 297 QGIPLVSDMSSNFLSRKF--DVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPIT--PTVFH---FKINADN-- 364 (621)
Q Consensus 297 ~g~llvvDavSs~G~~pI--Dv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~~--P~~ld---~~~~~~~-- 364 (621)
+|+++|+|++|++|+... ++..+| ++.++++|++. +.|-.++.-++++.+++++.. ....+ .......
T Consensus 147 ~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 226 (379)
T PRK11658 147 YGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQ 226 (379)
T ss_pred cCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCc
Confidence 899999999999998765 355555 77888999993 443333333467777664311 11110 0000000
Q ss_pred --CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 365 --NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 365 --~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
....++. +-+..+.+|+.++... +++.+.++.+++++++++.|.+++
T Consensus 227 ~~~~~~G~n--~~~~~l~AAl~~~ql~-~l~~~~~~r~~~a~~~~~~L~~~~ 275 (379)
T PRK11658 227 AEVLTPGYK--YNLADINAAIALVQLA-KLEALNARRREIAARYLQALADLP 275 (379)
T ss_pred ceeeccccc--cCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0011221 1235677888888777 899999999999999999999886
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-09 Score=109.60 Aligned_cols=125 Identities=11% Similarity=0.033 Sum_probs=80.0
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEeccccc--CCCccccc--ccc--eEEeccccccCCCcc--EE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNF--LSRKFDVS--KFG--VIIAGAQKNIGPAGI--TV 337 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~--G~~pIDv~--~~g--vl~asaqK~lGP~Gl--g~ 337 (621)
.++++++++|+-.|.||...+. ++ .++.++|+|.+.+- ...+.++. +.+ +++.|-.|.+|++|+ |+
T Consensus 137 ~~~~~~i~l~np~NPTG~~~~~~~l~~l~-~~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~ 215 (349)
T PRK07908 137 PDDADLVVIGNPTNPTSVLHPAEQLLALR-RPGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGY 215 (349)
T ss_pred ccCCCEEEEcCCCCCCCCCcCHHHHHHHH-hcCCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeee
Confidence 4578899999999999999984 33 35788999988752 23333442 233 555688999998885 99
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ--GGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~--gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.++++++++.+... ..+.+.....++... +... .-++++.++.+++.+++.+.|.++
T Consensus 216 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 276 (349)
T PRK07908 216 ALGAPDVLARLTRGRA--------------HWPVGTLQLEAIAAC---CAPRAVAEAAADAARLAADRAEMVAGLRAV 276 (349)
T ss_pred eecCHHHHHHHHhcCC--------------CCCccHHHHHHHHHH---hcccchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999887643211 011222222322222 2211 014556777778888888888776
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-08 Score=110.56 Aligned_cols=243 Identities=13% Similarity=0.096 Sum_probs=145.0
Q ss_pred CceeccCCC-CCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 51 PVINFGAGP-AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 51 ~~~lf~aGP-s~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
.+++....| -+.|+.|++++.+.+... .+... . . ..+.|+.+++.+|++.+ +|+++ +|+++
T Consensus 45 ~i~l~~~~~~~~~~~~~~~a~~~~~~~~----------~~Y~~-~-~-~~~Lr~aia~~~~v~~e-~I~it-~Gs~~--- 106 (370)
T PRK09105 45 AVFLNANECPLGPSPAARDAAARSAALS----------GRYDL-E-L-EDDLRTLFAAQEGLPAD-HVMAY-AGSSE--- 106 (370)
T ss_pred cEEecCCCCCCCCCHHHHHHHHHHHHHh----------cCCCC-c-h-HHHHHHHHHHHhCcChh-hEEEc-CChHH---
Confidence 345554444 568999999998876331 11111 1 2 66788899999999665 78876 56888
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+++++ +..+..+||++.+..++++.. ...++..|...+..+.
T Consensus 107 --ai~~~--------------------------~~~l~~~gd~Vli~~P~y~~~--~~~~~~~g~~~~~v~~-------- 148 (370)
T PRK09105 107 --PLNYA--------------------------VLAFTSPTAGLVTADPTYEAG--WRAADAQGAPVAKVPL-------- 148 (370)
T ss_pred --HHHHH--------------------------HHHHcCCCCEEEEeCCChHHH--HHHHHHcCCeEEEecC--------
Confidence 44443 333445566655555554433 3356677754322211
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
+.+|. .+.+++ . +..+++++|++|+-.|.||..
T Consensus 149 ----------------------~~~~~--~d~~~l---------------------~--~~~~~~~~v~l~nP~NPTG~~ 181 (370)
T PRK09105 149 ----------------------RADGA--HDVKAM---------------------L--AADPNAGLIYICNPNNPTGTV 181 (370)
T ss_pred ----------------------CCCCC--CCHHHH---------------------H--hcCCCCCEEEEeCCCCCCCcC
Confidence 00111 111111 1 123568999999999999999
Q ss_pred ccc-----ccc--cCCCcEEEecccc-cCCCc--cccccc--c-eEEeccccccCCCc--cEEEEEchhHHhhhCCCCCc
Q psy8733 290 FNY-----IPD--SQGIPLVSDMSSN-FLSRK--FDVSKF--G-VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPT 354 (621)
Q Consensus 290 ~p~-----i~~--~~g~llvvDavSs-~G~~p--IDv~~~--g-vl~asaqK~lGP~G--lg~livr~~ll~~~~~~~P~ 354 (621)
.+. +.+ .+++++|+|.+.. +...+ +++.+. + +++.|--|.+|.+| +|+++.++++++++...
T Consensus 182 ~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~--- 258 (370)
T PRK09105 182 TPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF--- 258 (370)
T ss_pred cCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc---
Confidence 984 222 3589999998763 32222 333222 2 55556669999999 99999999988766431
Q ss_pred eeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 355 VFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 355 ~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
..++++.....+...+|+ +.+-++...++.+++.+.+++.|++.+
T Consensus 259 ------------~~~~~~~~~~~aa~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g 303 (370)
T PRK09105 259 ------------GHNPLPVPAAAAGLASLR---DPKLVPQRRAENAAVREDTIAWLKKKG 303 (370)
T ss_pred ------------CCCCcCHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 012344444444444443 221256666777888888888888763
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.1e-09 Score=111.63 Aligned_cols=243 Identities=13% Similarity=0.099 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccC
Q psy8733 62 LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMN 141 (621)
Q Consensus 62 ~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~ 141 (621)
++++-++++.+.+.+.. ... + ...++.|+.+++++|.+. .++ + +|||. |++++...++
T Consensus 8 ~~~~~~~~v~~~~~~~~--------~~~-g----~~~~~le~~la~~~g~~~--~v~-~-~sgt~-----al~~~l~al~ 65 (380)
T TIGR03588 8 IDQDDIDAVVEVLKSDF--------LTQ-G----PTVPAFEEALAEYVGAKY--AVA-F-NSATS-----ALHIACLALG 65 (380)
T ss_pred CCHHHHHHHHHHHhcCC--------ccC-C----hhHHHHHHHHHHHHCCCe--EEE-E-cCHHH-----HHHHHHHHcC
Confidence 56667888877663311 011 1 246778999999999863 454 4 36888 6877777778
Q ss_pred CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCcc
Q psy8733 142 VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221 (621)
Q Consensus 142 ~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (621)
+++||+|++... .|.+ +...++..|...+..+..
T Consensus 66 ~~~Gd~Viv~~~----~~~~-----------------------~~~~~~~~G~~~~~~~~~------------------- 99 (380)
T TIGR03588 66 VGPGDRVWTTPI----TFVA-----------------------TANCALYCGAKVDFVDID------------------- 99 (380)
T ss_pred CCCCCEEEeCCc----chHH-----------------------HHHHHHHcCCEEEEEecC-------------------
Confidence 889999888753 2211 122344566543333210
Q ss_pred ccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCC----CCceEEEEecccccccccccc-----
Q psy8733 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD----PEASYLYYCDNETVDGVEFNY----- 292 (621)
Q Consensus 222 ~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~----~~t~~V~~thnET~tGv~~p~----- 292 (621)
...| .++++.+ + -.++ +++++|.++|. +|...|+
T Consensus 100 ----------~~~~--~~d~~~l---------------------~-~~i~~~~~~~t~~v~~~~~---~G~~~~~~~i~~ 142 (380)
T TIGR03588 100 ----------PDTG--NIDEDAL---------------------E-KKLAAAKGKLPKAIVPVDF---AGKSVDMQAIAA 142 (380)
T ss_pred ----------CCcC--CcCHHHH---------------------H-HHhhcccCCCceEEEEeCC---CCccCCHHHHHH
Confidence 0000 0122221 0 0233 57888888773 6887775
Q ss_pred ccccCCCcEEEecccccCCCcccccc-----c-ceEEeccc--cccC-CCccEEEEEchhHHhhhCCCC--Cceeecc--
Q psy8733 293 IPDSQGIPLVSDMSSNFLSRKFDVSK-----F-GVIIAGAQ--KNIG-PAGITVVIVREDLLEYALPIT--PTVFHFK-- 359 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~pIDv~~-----~-gvl~asaq--K~lG-P~Glg~livr~~ll~~~~~~~--P~~ld~~-- 359 (621)
+++++|+++|+|++|++|+. ++... + |+.++|.| |+++ +.|-.++.-++++.+++++.. ....+..
T Consensus 143 l~~~~~~~lI~D~a~a~g~~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~ 221 (380)
T TIGR03588 143 LAKKHGLKIIEDASHALGAE-YGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLF 221 (380)
T ss_pred HHHHcCCEEEEECCCcccCc-cCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCcccc
Confidence 45689999999999999975 44332 3 37777776 9996 666556666677776654310 0000000
Q ss_pred -ccccCCCcc---------CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 360 -INADNNSVY---------NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 360 -~~~~~~s~~---------~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
........+ .-++..+..+ +..++ .++.+.++.+++++++++.|..++++.
T Consensus 222 ~~~~~~~~~~~~~~~g~n~~m~~l~aa~g----~~qL~---~l~~~~~~r~~~~~~~~~~L~~~~~~~ 282 (380)
T TIGR03588 222 EKQDEGPWYYEQQELGFNYRMTDIQAALG----LSQLK---KLDRFVAKRREIAARYDRLLKDLPYFT 282 (380)
T ss_pred cccccCcceeeeeccccccCccHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 000000000 0111221212 22232 368888899999999999999887543
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-08 Score=108.85 Aligned_cols=127 Identities=11% Similarity=0.130 Sum_probs=92.0
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-c--------ccc-cccceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-K--------FDV-SKFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-p--------IDv-~~~gvl~asaqK~lGP~Glg~ 337 (621)
++++|.+++..+.+|...|+ +++++|+++++|.++++|.. + .++ ++.+++..+..|.+|.+| |+
T Consensus 177 ~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~ 255 (402)
T TIGR01821 177 RPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG-GY 255 (402)
T ss_pred CCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC-ce
Confidence 57899999999999999986 45688999999999996632 1 122 223577789999999777 78
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.++++++.+....+. ..+ .+.|...+++..++|+++.+. +.+.++..++.+++++.|++++
T Consensus 256 i~~~~~~~~~l~~~~~~-----------~~~t~~~~~~~~aaa~aaL~~~~~~---~~~~~~~~~~~~~l~~~L~~~g 319 (402)
T TIGR01821 256 IAASRKLIDAIRSYAPG-----------FIFTTSLPPAIAAGATASIRHLKES---QDLRRAHQENVKRLKNLLEALG 319 (402)
T ss_pred eecCHHHHHHHHHhCcC-----------ceecCcCCHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHHHHcC
Confidence 88888887765321111 111 234445667777899988764 5666777788899999998874
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-08 Score=108.83 Aligned_cols=129 Identities=11% Similarity=0.097 Sum_probs=92.5
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-c--------ccc-cccceEEeccccccCCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-K--------FDV-SKFGVIIAGAQKNIGPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-p--------IDv-~~~gvl~asaqK~lGP~Glg 336 (621)
+++++|.+++..+.+|...|+ +++++|+++|+|.++++|.. + .++ ++.++++.+-.|.+|++| |
T Consensus 177 ~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G 255 (407)
T PRK09064 177 DRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG-G 255 (407)
T ss_pred CCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC-c
Confidence 468899999999999999885 45688999999999985531 1 222 234578889999999888 8
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++.+.+....+.+ .....++ ....+++.++++++.+. +...++..++.+++++.|.+++
T Consensus 256 ~~~~~~~~~~~l~~~~~~~---------~~t~~~~-~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~l~~~L~~~g 320 (407)
T PRK09064 256 YIAGSAALVDAVRSYAPGF---------IFTTSLP-PAIAAAALASIRHLKES---NEERERHQERAAKLKAALDAAG 320 (407)
T ss_pred eEecCHHHHHHHHHhCccc---------cccCcCC-HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHcC
Confidence 8888988877553221111 0112233 35567777899999775 3445778888899999998864
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-08 Score=107.81 Aligned_cols=133 Identities=11% Similarity=0.135 Sum_probs=85.6
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----C-----cccccccc--eEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----R-----KFDVSKFG--VIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~-----pIDv~~~g--vl~asaqK~l 330 (621)
+++++++|.+++-.|+||...+. +++++++++++|.+.+... . .++.+..+ +++.|--|.+
T Consensus 161 l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 240 (393)
T PRK05764 161 ITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAY 240 (393)
T ss_pred hCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccc
Confidence 45678999999999999998762 3457899999998754321 1 11122223 7777888999
Q ss_pred CCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 331 GPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 331 GP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
|++| +|.++.++++.+++.... ......++....+++..+|+.. +. -++.+.++.+++.+.+++
T Consensus 241 ~~~G~RiG~i~~~~~~~~~~~~~~------------~~~~~~~~~~~q~~~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~ 306 (393)
T PRK05764 241 AMTGWRLGYAAGPKELIKAMSKLQ------------SHSTSNPTSIAQYAAVAALNGP-QD-EVEEMRQAFEERRDLMVD 306 (393)
T ss_pred cCccceeEEEecCHHHHHHHHHHH------------hhcccCCChHHHHHHHHHHcCC-hH-HHHHHHHHHHHHHHHHHH
Confidence 9889 799998988887653210 1112233334444444444311 11 356677777788888889
Q ss_pred HHHccCCc
Q psy8733 409 EIDNSDKF 416 (621)
Q Consensus 409 ~L~~~~g~ 416 (621)
.|++++|+
T Consensus 307 ~L~~~~g~ 314 (393)
T PRK05764 307 GLNEIPGL 314 (393)
T ss_pred HHhhCCCC
Confidence 88877544
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-08 Score=106.43 Aligned_cols=128 Identities=11% Similarity=0.134 Sum_probs=89.6
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC-Ccc--------cc-cccceEEeccccccCCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS-RKF--------DV-SKFGVIIAGAQKNIGPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~-~pI--------Dv-~~~gvl~asaqK~lGP~Glg 336 (621)
+++++|.+++..+.+|...|+ +++++++++++|.++++|. -|. ++ ++.++++.+--|.+|.+| |
T Consensus 176 ~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G-G 254 (406)
T PRK13393 176 HRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG-G 254 (406)
T ss_pred CCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC-c
Confidence 367899999999999999996 4567899999999998655 121 11 123467778999999777 7
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++.+.+.... .+..+ ++.|....+++.++|+++.+. +.. .++.+++.+++++.|.+++
T Consensus 255 ~~~~~~~~~~~l~~~~-----------~~~~~t~~~~p~~~aa~~aaL~~~~~~-~~~--~~~~~~~~~~l~~~L~~~g 319 (406)
T PRK13393 255 YITGSAALCDFIRSFA-----------SGFIFTTSLPPAVAAGALASVRHLKAS-SAE--RERHQDRVARLRARLDKAG 319 (406)
T ss_pred eeeCCHHHHHHHHHhC-----------cCceecCccCHHHHHHHHHHHHHHhhC-HHH--HHHHHHHHHHHHHHHHHcC
Confidence 8877888776543211 11112 345556677888999998765 322 3556778889999998763
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=121.20 Aligned_cols=145 Identities=15% Similarity=0.195 Sum_probs=87.6
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~G--lg~liv 340 (621)
+++++++|++++..|++|...|+ +++++|+++|+|.+++.+....++ ++| +++.|+||++|++| +|.+++
T Consensus 146 i~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl-~~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 146 ITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPI-EHGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred cCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChh-HcCCCEEEEcCccccCCCCCceEEEEE
Confidence 45689999999999999999996 456889999999998855444444 344 99999999999777 777777
Q ss_pred chh-H-Hhh------hCCCCCceeec--cccccCCCccCCchHHHHHHHHHHHH----HHHhhCCH---HHHHHHHHHHH
Q psy8733 341 RED-L-LEY------ALPITPTVFHF--KINADNNSVYNTPPTFVVHVIQRVFA----WIKRQGGL---AKMEQNSLQKS 403 (621)
Q Consensus 341 r~~-l-l~~------~~~~~P~~ld~--~~~~~~~s~~~TP~v~~I~aL~~aL~----~i~~~gGl---~~i~~r~~~la 403 (621)
..+ . +.. +....+.+.+. ...........+........++..+. |+... |+ +.+.+++.+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r-gl~tl~~R~~~~~~nA 303 (431)
T PRK08248 225 DSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQ-GLETLHLRMERHSENA 303 (431)
T ss_pred eCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhc-CcCcHHHHHHHHHHHH
Confidence 433 1 110 10111111000 00000000000001111222222222 55554 54 57788889999
Q ss_pred HHHHHHHHccCCc
Q psy8733 404 VLLYQEIDNSDKF 416 (621)
Q Consensus 404 ~~L~e~L~~~~g~ 416 (621)
..|-+.|++.+++
T Consensus 304 ~~la~~L~~~p~v 316 (431)
T PRK08248 304 LAVAKFLEEHEAV 316 (431)
T ss_pred HHHHHHHHhCCCc
Confidence 9999999998864
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-08 Score=106.88 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=81.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccc---cCC---Cc-ccc-ccc--ceEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN---FLS---RK-FDV-SKF--GVIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs---~G~---~p-IDv-~~~--gvl~asaqK~lG 331 (621)
+++++++|+++|..|.||..++. +++++|+++|+|.+-. +.. .+ ..+ +.. .+++.|-=|.+|
T Consensus 157 i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 236 (389)
T PRK05957 157 ITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYG 236 (389)
T ss_pred cCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhcc
Confidence 45679999999999999999882 3467899999999832 111 11 122 222 266677779999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR-QGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~-~gGl~~i~~r~~~la~~L~e 408 (621)
++| +|.++.++++.+++... . .....+++.+.-+++. ..+.+ .+-+++..++.+++.+.+.+
T Consensus 237 ~~GlRiG~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~q~~~~---~~l~~~~~~~~~~~~~~~~~r~~l~~ 301 (389)
T PRK05957 237 FASWRIGYMVIPIHLLEAIKKI-------Q-----DTILICPPVVSQYAAL---GALQVGKSYCQQHLPEIAQVRQILLK 301 (389)
T ss_pred CccceeEEEecCHHHHHHHHHH-------H-----hhcccCCCcHHHHHHH---HHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999988765321 0 0111222333333333 33322 00134445556777777888
Q ss_pred HHHccCC
Q psy8733 409 EIDNSDK 415 (621)
Q Consensus 409 ~L~~~~g 415 (621)
.|+++++
T Consensus 302 ~L~~~~~ 308 (389)
T PRK05957 302 SLGQLQD 308 (389)
T ss_pred HHHhcCC
Confidence 8877653
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-08 Score=108.05 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=82.5
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC---Ccc-cccccc--eEEeccccccCCCc--cEE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS---RKF-DVSKFG--VIIAGAQKNIGPAG--ITV 337 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~---~pI-Dv~~~g--vl~asaqK~lGP~G--lg~ 337 (621)
++++++|.+|+-.|.||...+. +.+. .+++|+|-+-.-.. ..+ .+++.+ +++.|--|.+|.+| +|+
T Consensus 173 ~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~-~~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy 251 (380)
T PLN03026 173 THKPKLLFLTSPNNPDGSIISDDDLLKILEL-PILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGY 251 (380)
T ss_pred ccCCcEEEEeCCCCCCCCCCCHHHHHHHHhc-CCEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCcccccee
Confidence 4678999999999999999985 3333 38899999853211 111 223444 77788889999998 788
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.++++++++..... +..++.....++.++|+- .+. ++++.++.++..+++++.|++++
T Consensus 252 ~~~~~~~i~~l~~~~~--------------~~~~~~~~q~aa~~aL~~-~~~--~~~~~~~~~~~r~~l~~~L~~~~ 311 (380)
T PLN03026 252 GAFPLSIIEYLWRAKQ--------------PYNVSVAAEVAACAALSN-PKY--LEDVKNALVEERERLFGLLKEVP 311 (380)
T ss_pred eecCHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHhhC-HHH--HHHHHHHHHHHHHHHHHHHHHCC
Confidence 9988888776532110 122344555555556531 111 44556666777788888888775
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-08 Score=107.92 Aligned_cols=76 Identities=17% Similarity=0.309 Sum_probs=53.6
Q ss_pred CCceEEEEecc-cccccccccc--------ccccCCCcEEEecccccCC-----Cccc--ccccceEEeccccccC-CCc
Q psy8733 272 PEASYLYYCDN-ETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS-----RKFD--VSKFGVIIAGAQKNIG-PAG 334 (621)
Q Consensus 272 ~~t~~V~~thn-ET~tGv~~p~--------i~~~~g~llvvDavSs~G~-----~pID--v~~~gvl~asaqK~lG-P~G 334 (621)
+++++|++++. .+.+|...|. +++++|+++++|+++.++. .+.+ +...+.++.+.||+++ |-|
T Consensus 136 ~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G 215 (353)
T PLN02721 136 PTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVG 215 (353)
T ss_pred CcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCcee
Confidence 57899999885 4567887762 3567899999999887654 2222 2234577778999997 544
Q ss_pred cEEEEEchhHHhhh
Q psy8733 335 ITVVIVREDLLEYA 348 (621)
Q Consensus 335 lg~livr~~ll~~~ 348 (621)
++++.++++.+.+
T Consensus 216 -~~~~~~~~~~~~~ 228 (353)
T PLN02721 216 -SVIVGSKSFIRKA 228 (353)
T ss_pred -eEEecCHHHHHhH
Confidence 5677788877654
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-08 Score=119.00 Aligned_cols=137 Identities=14% Similarity=0.163 Sum_probs=87.3
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccc-cccc--eEEecccccc------CCCccEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDV-SKFG--VIIAGAQKNI------GPAGITV 337 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv-~~~g--vl~asaqK~l------GP~Glg~ 337 (621)
.++..|++++.+|..++..|+ +++++|++++||+++..+...+.- .++| ++.+++|||| |+||+|+
T Consensus 639 ~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~ 718 (954)
T PRK05367 639 DNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGP 718 (954)
T ss_pred CCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEE
Confidence 357788888888774445665 346789999999999866555442 3454 9999999996 3666889
Q ss_pred EEEchhHHhhhCCCCCcee-eccccccCCCccCCchHHHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHHHHc
Q psy8733 338 VIVREDLLEYALPITPTVF-HFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQG--GLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~l-d~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~g--Gl~~i~~r~~~la~~L~e~L~~ 412 (621)
+++++.+. +..|... .........+...|.++.....+-.+.-|+...| |+.++.++...+++++.+.|++
T Consensus 719 l~vr~~l~----p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~ 792 (954)
T PRK05367 719 IGVKAHLA----PFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKD 792 (954)
T ss_pred Eeeccccc----ccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99997553 3333321 0000011112223444433345555777777662 4566666666999999999976
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.4e-08 Score=105.01 Aligned_cols=130 Identities=12% Similarity=0.096 Sum_probs=80.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEeccc-cc--CC-Cccc-ccccc--eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSS-NF--LS-RKFD-VSKFG--VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavS-s~--G~-~pID-v~~~g--vl~asaqK~lGP~G 334 (621)
+.+++++|++++-.|+||...+. +++++++++|+|.+- .+ .. ..++ ++..+ +++.|..|++|.+|
T Consensus 139 ~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 218 (356)
T PRK08056 139 LTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPG 218 (356)
T ss_pred ccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcc
Confidence 34789999999999999999882 345789999999972 11 11 1111 23344 78899999999887
Q ss_pred --cEEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 335 --ITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 335 --lg~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+|+++.. +++++++.. .....+++....+++..+++ ...-+..+.++.++..+++++.|+
T Consensus 219 ~RiG~~v~~~~~~~~~l~~--------------~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~ 281 (356)
T PRK08056 219 LRLGYLVNSDDAAVARMRR--------------QQMPWSINAFAALAGEVILQ---DRAYQQATWQWLAEEGARFYQALC 281 (356)
T ss_pred hhheeeecCCHHHHHHHHH--------------hCCCCchhHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888774 456554421 01123344444444333332 110134556667777788888888
Q ss_pred ccCCc
Q psy8733 412 NSDKF 416 (621)
Q Consensus 412 ~~~g~ 416 (621)
+++|+
T Consensus 282 ~~~~~ 286 (356)
T PRK08056 282 ALPLL 286 (356)
T ss_pred cCCCc
Confidence 76543
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-08 Score=105.14 Aligned_cols=131 Identities=16% Similarity=0.260 Sum_probs=81.8
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---C----cccccc-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---R----KFDVSK-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~----pIDv~~-~g--vl~asaqK~lG 331 (621)
+++++++|.+++..|.||...+. +++++++++|+|.+-.-.. . ..++.. .+ +++.|-.|.+|
T Consensus 159 ~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~ 238 (397)
T PRK07568 159 ITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYS 238 (397)
T ss_pred cCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhcc
Confidence 45678999999999999998862 3457899999998764221 1 123332 23 77788899999
Q ss_pred CCc--cEEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 332 P~G--lg~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
.+| +|+++.. +++.+++.. ... ..+ +++.....++..+|+.-.+ -++.+.++.+++.+.+++
T Consensus 239 ~~G~R~G~~~~~~~~~~~~~~~----------~~~--~~~-~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~ 303 (397)
T PRK07568 239 ACGARIGCLISKNKELIAAAMK----------LCQ--ARL-SPPTLEQIGAAALLDTPES--YFDEVREEYKKRRDILYE 303 (397)
T ss_pred CCCcceEEEecCCHHHHHHHHH----------Hhh--ccC-CCCcHHHHHHHHHhhCCHH--HHHHHHHHHHHHHHHHHH
Confidence 777 6777764 556554311 000 112 2333444455555542111 256667777788888888
Q ss_pred HHHccCC
Q psy8733 409 EIDNSDK 415 (621)
Q Consensus 409 ~L~~~~g 415 (621)
.|++++|
T Consensus 304 ~L~~~~~ 310 (397)
T PRK07568 304 ELNKIPG 310 (397)
T ss_pred HHhcCCC
Confidence 8887653
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-08 Score=110.15 Aligned_cols=277 Identities=19% Similarity=0.177 Sum_probs=177.6
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
++.+....+++.+|+...+.+...+.. +.+ --..++....+=+++-..++++++.|+...=.|+ .|||+
T Consensus 62 p~~~~~~~~~~~~~~~a~~~~~~~~~~--nl~-----d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t-~GgTe--- 130 (460)
T COG0076 62 PRANLAGFCPTRVPPVAAELLVSALNK--NLG-----DPDESPAAAELEERVVNMLSDLLGAPEEASGTFT-SGGTE--- 130 (460)
T ss_pred cceEEEccCCCCCHHHHHHHHHHHHhh--cCC-----CcccChhHHHHHHHHHHHHHHHhCCCCCCceEEE-cChHH---
Confidence 456888899999999998888887632 111 2345677788888999999999999876556776 67898
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhh----------CCCC-cEEEEEcChHHHHHHHHHHHhCCceee
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI----------GRTG-KADYVVTGSWSKKAAAEAEKYGKVNLV 198 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~----------~~g~-~~~~v~tG~~~~~~~~~a~~~G~~~~~ 198 (621)
-|++|-.+ +.|.. ..+. ++..-.+.+|+ |.+-|+-.|.....
T Consensus 131 ---an~lal~a----------------------ar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s--~~Kaa~~lG~~~~~ 183 (460)
T COG0076 131 ---ANLLALLA----------------------ARERWRKRALAESGKPGGKPNIVCSETAHFS--FEKAARYLGLGLRR 183 (460)
T ss_pred ---HHHHHHHH----------------------HHHHHHHHhhhcccccCCCCeEEecCcchhH--HHHHHHHhCCCcee
Confidence 34444211 11111 0011 23333345554 34455556653332
Q ss_pred ecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceE--
Q psy8733 199 IPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASY-- 276 (621)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~-- 276 (621)
.+.. |. -..+|+++++ + ++++++..
T Consensus 184 v~~~------~~-------------------------~~~id~~~l~---------------------~-~i~~~t~~g~ 210 (460)
T COG0076 184 VPTV------PT-------------------------DYRIDVDALE---------------------E-AIDENTIGGV 210 (460)
T ss_pred EEec------cC-------------------------ccccCHHHHH---------------------H-HHHhhccCce
Confidence 2211 00 0112223320 0 23344444
Q ss_pred EEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc--cc-------ceEEeccccccC-CCccEEEEEc
Q psy8733 277 LYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS--KF-------GVIIAGAQKNIG-PAGITVVIVR 341 (621)
Q Consensus 277 V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~--~~-------gvl~asaqK~lG-P~Glg~livr 341 (621)
|.-+..-|-+|.+=|+ ++++++++++|||+..-...|+.=. .| +-+..++|||+. |.|.|++++|
T Consensus 211 vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~r 290 (460)
T COG0076 211 VVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFR 290 (460)
T ss_pred EEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEE
Confidence 8888888999998886 4568999999999987776655321 12 279999999997 9999999999
Q ss_pred hh-HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 342 ED-LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 342 ~~-ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
++ .+.+.....+.|+.-. ...+....+|.+...+.++-..++++-.+ |..++.++..+++++|.+.|++.+.|.+.
T Consensus 291 d~e~l~~~~~~~~~yl~~~-~~~~~ti~~sr~~~~~~~~~~~l~~lG~e-Gy~~l~~~~~~~a~~la~~l~~~~~~e~~ 367 (460)
T COG0076 291 DEEALRRILIFADYYLPGG-GIPNFTILGSRPGRQALALYANLRRLGRE-GYRKLLDRTLELARYLAEELEKLGDFELV 367 (460)
T ss_pred CHHHhhhhhhcccccCCCC-CcCceeEeeccchHHHHHHHHHHHHhCHh-HHHHHHHHHHHHHHHHHHHHHhCCCcEee
Confidence 88 4544333222232110 11112233566666777788888888666 89999999999999999999999766654
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.2e-09 Score=113.72 Aligned_cols=125 Identities=11% Similarity=0.074 Sum_probs=91.7
Q ss_pred CCCCceEEEEecccccccccccc--c---cccC--CCcEEEecccccCCCcccccccc--eEEecccccc-CCC--ccEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--I---PDSQ--GIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPA--GITV 337 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--i---~~~~--g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~--Glg~ 337 (621)
++++|++|++-+..|++|.+.|+ | ++++ |++++||.+++.+.. ++..+|| +++.|+||++ |+. +.|+
T Consensus 144 l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~GaDivv~S~tKyl~Ghsdv~~G~ 222 (395)
T PRK08114 144 IQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGIDISIQAGTKYLVGHSDAMIGT 222 (395)
T ss_pred cCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCCcEEEEcCcccccCCCcceeEE
Confidence 56789999999999999999997 3 4555 599999999999887 9999887 9999999999 575 8898
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ--GGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~--gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
++.+++.++++.. +. ..-+ .+++.+.. |+... .-++-+.+|+.+.+..+-+.|++.|.
T Consensus 223 v~~~~~~~~~l~~-------~~--~~~G---~~~~p~~a--------~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~ 282 (395)
T PRK08114 223 AVANARCWEQLRE-------NS--YLMG---QMVDADTA--------YMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPE 282 (395)
T ss_pred EEcCHHHHHHHHH-------HH--Hhcc---CCCCHHHH--------HHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8888887665421 00 0011 12222222 23222 13667788888889999999998874
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-08 Score=99.62 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=103.2
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhH
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDL 344 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~l 344 (621)
.+.+..+||..-..|.+.|. +++++|+++++.++-++|-+|++..+.+ |+++|+||.+. ..=+|++.++++.
T Consensus 156 ~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ 235 (382)
T COG1103 156 PPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEW 235 (382)
T ss_pred CceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCCeeEEeehhHH
Confidence 46777899999999999995 6678999999999999999999999886 99999999995 4448999999998
Q ss_pred HhhhCCCCCceeeccccccCC-CccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCC
Q psy8733 345 LEYALPITPTVFHFKINADNN-SVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA 423 (621)
Q Consensus 345 l~~~~~~~P~~ld~~~~~~~~-s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~ 423 (621)
-+.........+.-+...--+ ...+-| |..|-+++....+. -..|+..-++++++.+.++.++|+......|
T Consensus 236 ae~V~r~Sg~~~~~KEvellGCT~rGap----ivTlmASfP~V~eR---VkrWdeEv~kaR~fv~elEkigg~~qlG~rP 308 (382)
T COG1103 236 AEIVLRRSGRAFPKKEVELLGCTVRGAP----IVTLMASFPHVVER---VKRWDEEVEKARWFVAELEKIGGVKQLGERP 308 (382)
T ss_pred HHHHHhhcccccccceeeeecccccCch----HHHHHhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHhCCCC
Confidence 766533221111111000001 112333 44455566666653 3456777889999999999999887765444
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-07 Score=102.97 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=93.1
Q ss_pred CCc-eEEEEecccccccccccc-----ccccCCCcEEEecccccCCC---------cccc--cccceEEeccccccCCCc
Q psy8733 272 PEA-SYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR---------KFDV--SKFGVIIAGAQKNIGPAG 334 (621)
Q Consensus 272 ~~t-~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~---------pIDv--~~~gvl~asaqK~lGP~G 334 (621)
+++ ++|.+....+.+|.+.|+ +++++|+++++|-+.++|.. ..++ ++.|++++|-.|.+|.+|
T Consensus 243 ~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G 322 (481)
T PLN02822 243 KKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG 322 (481)
T ss_pred CCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC
Confidence 344 677777776778999996 45689999999999997752 2333 356688999999999989
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccC--CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYN--TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~--TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
|+++.++++++.+.... ...+|. .||.. ..+..++|+.+.+ .+.+.++.+++.+++++.|++
T Consensus 323 -G~i~g~~~ii~~~~~~~-----------~~~~fsa~lPp~~-~~Aa~~aL~~l~~---~~~~~~~l~~~~~~l~~~L~~ 386 (481)
T PLN02822 323 -GFCTGSARVVDHQRLSS-----------SGYVFSASLPPYL-ASAAITAIDVLED---NPSVLAKLKENIALLHKGLSD 386 (481)
T ss_pred -eEEEcCHHHHHHHHhcC-----------CceeeccccCHHH-HHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHh
Confidence 99999999887653211 122333 34443 3444468887654 257788899999999999998
Q ss_pred cCCcc
Q psy8733 413 SDKFY 417 (621)
Q Consensus 413 ~~g~~ 417 (621)
+.|+.
T Consensus 387 ~~g~~ 391 (481)
T PLN02822 387 IPGLS 391 (481)
T ss_pred cCCcc
Confidence 75554
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.9e-08 Score=101.60 Aligned_cols=128 Identities=10% Similarity=0.116 Sum_probs=84.0
Q ss_pred CceEEEEecccccccccccc-----ccc-cCCCcEEEeccc-ccCCCc-ccc-cccc--eEEeccccccCCCc--cEEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPD-SQGIPLVSDMSS-NFLSRK-FDV-SKFG--VIIAGAQKNIGPAG--ITVVI 339 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~-~~g~llvvDavS-s~G~~p-IDv-~~~g--vl~asaqK~lGP~G--lg~li 339 (621)
++++|.+++-.|+||...+. +.+ .+++++|+|-+- .++..+ ..+ +..+ +++.|--|.+|.+| +|+++
T Consensus 144 ~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~ 223 (353)
T PRK05387 144 PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAI 223 (353)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeee
Confidence 45788999999999999984 333 248999999642 232211 111 2233 88889999999888 89999
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
.++++++++..... .....|++....+++..+++. .+.++.+.++.+++.+.+++.|.+++
T Consensus 224 ~~~~~~~~l~~~~~-----------~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~g 284 (353)
T PRK05387 224 GHPELIEALNRVKN-----------SFNSYPLDRLAQAGAIAAIED---EAYFEETRAKVIATRERLVEELEALG 284 (353)
T ss_pred cCHHHHHHHHHhhc-----------cCCCCCcCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99888876542111 011234556666666555542 21356677777888888889888763
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.9e-08 Score=104.74 Aligned_cols=124 Identities=15% Similarity=0.225 Sum_probs=83.2
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cC--CCc--cccccc--ceEEeccccccCC--C
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FL--SRK--FDVSKF--GVIIAGAQKNIGP--A 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G--~~p--IDv~~~--gvl~asaqK~lGP--~ 333 (621)
+++++|.+....+.+|+..| + +++++|+++|+|-+++ +| ... .+.... |++++| |+++. .
T Consensus 177 ~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~~ 254 (400)
T PTZ00125 177 PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLG--KALSGGLY 254 (400)
T ss_pred CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEc--ccccCCCc
Confidence 57899998777788899887 3 4568999999999976 55 222 222222 466665 99963 3
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.+|+++.++++.+.+... ....+++. +.....+..++|+++.+. ++ .++.+++.+++++.|.++
T Consensus 255 ~ig~v~~~~~~~~~~~~~-----------~~~~t~~~-~~~~~~aa~~~l~~i~~~-~~---~~~~~~~~~~l~~~l~~l 318 (400)
T PTZ00125 255 PISAVLANDDVMLVIKPG-----------EHGSTYGG-NPLACAVAVEALEVLKEE-KL---AENAQRLGEVFRDGLKEL 318 (400)
T ss_pred CcEEEEEcHHHHhhccCC-----------CCCCCCCc-CHHHHHHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHHHHH
Confidence 689999999998765321 01223332 234556667889998765 54 456666778888887764
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-07 Score=102.28 Aligned_cols=131 Identities=11% Similarity=0.117 Sum_probs=81.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC---c---ccccccceEEeccccccCCCc-
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR---K---FDVSKFGVIIAGAQKNIGPAG- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~---p---IDv~~~gvl~asaqK~lGP~G- 334 (621)
+++++++|++++..|.||...+. +++++|+++|+|.+-+-... . .+..+-.+.+.|.-|.+|.+|
T Consensus 150 ~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~ 229 (373)
T PRK07324 150 VRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGI 229 (373)
T ss_pred CCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccc
Confidence 45689999999999999999882 34578999999987542211 1 122112377788899999888
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++++++..... .... +++...-.+...+|+...+. ++.+.+..++..+.+.+.|++.
T Consensus 230 RiG~i~~~~~li~~~~~~~~-----------~~~~-~~~~~~q~~a~~~l~~~~~~--l~~~~~~~~~~~~~l~~~l~~~ 295 (373)
T PRK07324 230 RVGWIAANEEVIDILRKYRD-----------YTMI-CAGVFDDMLASLALEHRDAI--LERNRKIVRTNLAILDEWVAKE 295 (373)
T ss_pred eeEEEecCHHHHHHHHHHhC-----------cEEe-cCChHHHHHHHHHHcCHHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 5999988888876643110 1112 22233333334445432222 4455555566666777777665
Q ss_pred C
Q psy8733 414 D 414 (621)
Q Consensus 414 ~ 414 (621)
+
T Consensus 296 ~ 296 (373)
T PRK07324 296 P 296 (373)
T ss_pred C
Confidence 4
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-08 Score=103.46 Aligned_cols=242 Identities=14% Similarity=0.146 Sum_probs=141.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhh
Q psy8733 59 PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISS 138 (621)
Q Consensus 59 Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~ 138 (621)
|-+.|+.+++++.+.+.+.. ..+.. +. -..+.|+.++++++.+.+.+|+++ +|+++ +++++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~--------~~~Y~-~~--~~~~lr~~ia~~~~~~~~~~I~~t-~G~~~-----~i~~~~~ 99 (356)
T PRK04870 37 PYRLPAELRAELGERLAEVA--------LNRYP-DP--RAAALKAALRAAMGVPAGADVLLG-NGSDE-----LIQLLAL 99 (356)
T ss_pred CCCCCHHHHHHHHHHhhccc--------cccCC-CC--CHHHHHHHHHHHhCcCCCCcEEEc-CCHHH-----HHHHHHH
Confidence 34789999999998763210 01111 11 136789999999998654467765 55666 3444322
Q ss_pred ccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCC
Q psy8733 139 SMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP 218 (621)
Q Consensus 139 ~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (621)
-+..+||++++..+++++ +...++..|...+..+.
T Consensus 100 --------------------------~~~~~gd~vlv~~P~y~~--~~~~~~~~g~~~~~i~~----------------- 134 (356)
T PRK04870 100 --------------------------ACAKPGATVLAPEPGFVM--YRMSAKLAGLEFVGVPL----------------- 134 (356)
T ss_pred --------------------------HhcCCCCEEEECCCCHHH--HHHHHHHcCCEEEEecC-----------------
Confidence 223455555555555443 34567777864332221
Q ss_pred CccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc-----c
Q psy8733 219 EASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----I 293 (621)
Q Consensus 219 ~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i 293 (621)
+..|+ ++++++ +......++++|++|+-.|+||...+. +
T Consensus 135 -------------~~~~~--~d~~~l---------------------~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i 178 (356)
T PRK04870 135 -------------TADFT--LDLPAM---------------------LAAIAEHRPALVFLAYPNNPTGNLFDDADVERI 178 (356)
T ss_pred -------------CCCCC--CCHHHH---------------------HHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHH
Confidence 00111 111221 111113478999999999999999985 3
Q ss_pred cccCCCcEEEecccc-cCCCc-c-cccccc--eEEeccccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCC
Q psy8733 294 PDSQGIPLVSDMSSN-FLSRK-F-DVSKFG--VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNS 366 (621)
Q Consensus 294 ~~~~g~llvvDavSs-~G~~p-I-Dv~~~g--vl~asaqK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s 366 (621)
.+..++++|+|.+-. +.... . .++..+ +++.|--| +|.+| +|+++.++++++++.... .
T Consensus 179 ~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~-------------~ 244 (356)
T PRK04870 179 IEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVR-------------P 244 (356)
T ss_pred HHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHcc-------------C
Confidence 332378899997653 33211 1 233444 77888899 89888 999999998887654311 0
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 367 VYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 367 ~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
..+.+....++...++++. + -++...++.+++.+.+.+.|+.++|+
T Consensus 245 -~~~~~~~~q~~a~~~l~~~-~--~~~~~~~~~~~~~~~l~~~L~~~~~~ 290 (356)
T PRK04870 245 -PYNVNVLTQATALFALEHV-D--VLDAQAAQLRAERTRLAAALAALPGV 290 (356)
T ss_pred -CCcCCHHHHHHHHHHHhCH-H--HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 1123334444444444432 1 25666677777888888888876544
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=110.63 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=83.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC--cccccccceEEecccccc-CCCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR--KFDVSKFGVIIAGAQKNI-GPAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~--pIDv~~~gvl~asaqK~l-GP~G--lg~li 339 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++.+.. |+++. .|+++.|+||++ ||.| .|+++
T Consensus 135 l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~~g-~Divv~S~tK~~~G~~~~laG~~v 213 (390)
T PRK08064 135 IKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLG-ADVVLHSATKFLAGHSDVLAGLAV 213 (390)
T ss_pred cCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCchhhC-CcEEEeecceeccCCccceeEEEE
Confidence 56789999999999999999986 45678999999999877654 44321 359999999999 5888 48888
Q ss_pred Ech-hHHhhhCCCCCceeeccccccCCCccCC-chHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 340 VRE-DLLEYALPITPTVFHFKINADNNSVYNT-PPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 340 vr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~T-P~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+++ ++.+++.+... .+++ .+....+. +++ ...-+..+.+++.+.+..+.+.|++.+.
T Consensus 214 ~~~~~~~~~l~~~~~-------------~~g~~~~~~~a~l---~~~---gl~tl~~R~~~~~~~a~~la~~L~~~~~ 272 (390)
T PRK08064 214 VKDEELAQKLYFLQN-------------SFGAVLGVQDCWL---VLR---GLKTLHVRLEHSSETANKIALYLQEHPK 272 (390)
T ss_pred eCCHHHHHHHHHHHH-------------hcCCCCCHHHHHH---HHc---ccCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 874 56555432110 0111 11111111 111 1112456667777778888899988774
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-08 Score=108.39 Aligned_cols=72 Identities=13% Similarity=0.186 Sum_probs=56.5
Q ss_pred CCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccCCC--ccEEEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPA--GITVVI 339 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~--Glg~li 339 (621)
.+++++++|++.+..+.+|...|+ +++++|+++|||++++.|.. .+..++ |++++|+||++|+. |+|.++
T Consensus 151 ~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~-~~p~~~GaDivv~S~~K~l~G~gd~~gG~v 229 (437)
T PRK05613 151 AVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-VRPLELGADVVVASLTKFYTGNGSGLGGVL 229 (437)
T ss_pred hCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc-cChHHhCCCEEEeeccceecCCCcceeEEE
Confidence 356789999988888888999996 45689999999999988754 333344 49999999999876 457777
Q ss_pred Ec
Q psy8733 340 VR 341 (621)
Q Consensus 340 vr 341 (621)
+.
T Consensus 230 v~ 231 (437)
T PRK05613 230 ID 231 (437)
T ss_pred Ee
Confidence 73
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-09 Score=117.92 Aligned_cols=96 Identities=24% Similarity=0.359 Sum_probs=83.6
Q ss_pred HHHHHhhcccccc-cCCcEEeeecHhHhhhcC------CCCCceeeeeecccC---CCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYAL------PITPTVFHFKINADN---NSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~------~~~p~~~~y~~~~~~---~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|++++|+||++| |.|++++++|++++++.. ..+|..+++.....+ ++++||||+..+|-++..++|+++
T Consensus 176 ~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~ 255 (361)
T TIGR01366 176 TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNG 255 (361)
T ss_pred CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHH
Confidence 7999999999999 559999999999998754 334666666543333 689999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccC
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSD 544 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~ 544 (621)
.||++.+.++.+++++.+|+.+++..
T Consensus 256 ~gg~e~~~~r~~~l~~~l~~~l~~~~ 281 (361)
T TIGR01366 256 NGGLDWAVARTADSSSRLYSWAQERP 281 (361)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998876
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=109.93 Aligned_cols=128 Identities=15% Similarity=0.141 Sum_probs=83.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccCCCc--c-EEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIGPAG--I-TVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lGP~G--l-g~li 339 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+.+.+. .|+++. .|+++.|.+|++|++| + |+++
T Consensus 143 i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl~~g-~Divv~S~sK~~~g~g~~~GG~vv 221 (390)
T PRK08133 143 VRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLG-ADVVIHSATKYLDGQGRVLGGAVV 221 (390)
T ss_pred cCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCchhhC-CcEEEeecceeecCCcceEeEEEE
Confidence 56789999999888999999986 4578999999999876554 444332 2589999999998877 4 5666
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+++.++++.. + .. . .-.+++....+.+...++ .+..+.+++.+.+..+.+.|++.+++
T Consensus 222 ~~~~~~~~~~~----~---~~---~--~g~~~~~~~a~~~l~gl~------tl~~R~~~~~~~a~~la~~L~~~p~v 280 (390)
T PRK08133 222 GSKELMEEVFG----F---LR---T--AGPTLSPFNAWVFLKGLE------TLSLRMEAHSANALALAEWLEAHPGV 280 (390)
T ss_pred cCHHHHHHHHH----H---HH---H--hCCCCCHHHHHHHHcccc------hHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 67776654321 0 00 0 011222222222111222 25556666677888888999887754
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-07 Score=100.12 Aligned_cols=130 Identities=11% Similarity=0.053 Sum_probs=82.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCccccc---cc-c--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKFDVS---KF-G--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pIDv~---~~-g--vl~asaqK~lG 331 (621)
+.+++++|++|+-.|+||...+. +++++++++|+|.+.+-. ..+..+. .. + +.+.|-=|.+|
T Consensus 161 ~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g 240 (383)
T TIGR03540 161 IAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYN 240 (383)
T ss_pred ccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccC
Confidence 34678999999888999999983 345789999999998632 1233322 11 2 55667779999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++.+++... .. . ...+++....+++..+++-..+ -++.+.++.+++.+.+++.
T Consensus 241 ~~GlRiG~~i~~~~l~~~~~~~-------~~----~-~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 306 (383)
T TIGR03540 241 MTGWRIGMAVGNADLIAGLGKV-------KT----N-VDSGVFQAIQYAAIAALNGPQD--VVKEIRKIYQRRRDLLLEA 306 (383)
T ss_pred CccceeeEEeCCHHHHHHHHHH-------HH----h-cccCCChHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 999 99999999888765321 10 1 1112222333343333322111 1455566777778888888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 307 L~~~ 310 (383)
T TIGR03540 307 LKKI 310 (383)
T ss_pred HHhC
Confidence 8876
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-07 Score=99.76 Aligned_cols=128 Identities=11% Similarity=0.188 Sum_probs=81.6
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccccccc--c--eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVSKF--G--VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~~~--g--vl~asaqK~lGP~G- 334 (621)
+++++|.+++.+|+||+..+. +++++++++|+|.+.+-.. ...++.++ + +++.|..|.+|.+|
T Consensus 165 ~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl 244 (391)
T PRK07309 165 DKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGW 244 (391)
T ss_pred CCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccc
Confidence 468999999889999998763 3457899999999976432 22233322 2 78899999999889
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|+++.++++++++.... .....+++....+++..+|+--... .....++.+++.+.+++.|++.
T Consensus 245 RvG~~v~~~~~~~~~~~~~------------~~~~~~~~~~~q~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 310 (391)
T PRK07309 245 RIGLIFAPAEFTAQLIKSH------------QYLVTAATTMAQFAAVEALTNGKDD--ALPMKKEYIKRRDYIIEKMTDL 310 (391)
T ss_pred eeEEEEeCHHHHHHHHHHH------------hhcccCCChHHHHHHHHHHhCChhH--HHHHHHHHHHHHHHHHHHHHHC
Confidence 888999999887653210 1111233444444444443311111 2344556666777788887765
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-07 Score=100.17 Aligned_cols=131 Identities=11% Similarity=0.156 Sum_probs=82.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccccc---c-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVS---K-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~---~-~g--vl~asaqK~lG 331 (621)
+.+++++|.+|+-+|.||...+. +++++++++|+|-+-+-.. .+..+. . .+ +++.|-.|.+|
T Consensus 175 ~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~ 254 (405)
T PRK06207 175 FKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTES 254 (405)
T ss_pred hhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhcc
Confidence 34578899999999999999983 2457899999999866421 111121 1 23 78888999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG-LAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG-l~~i~~r~~~la~~L~e 408 (621)
.+| +|.++.++++++++..... ....+++ .+...++ ..++.+..+ +++..++++++.+.+++
T Consensus 255 lpGlRiG~ii~~~~l~~~~~~~~~-----------~~~~~~~-~~~q~a~---~~~l~~~~~~~~~~~~~~~~~r~~l~~ 319 (405)
T PRK06207 255 LSGYRLGVAFGSPAIIDRMEKLQA-----------IVSLRAA-GYSQAVL---RTWFSEPDGWMKDRIARHQAIRDDLLR 319 (405)
T ss_pred CcccceEEEEcCHHHHHHHHHHHh-----------HhccCCC-HHHHHHH---HHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 779 9999999988876632110 0111222 2222332 333332101 45556666677777888
Q ss_pred HHHccCC
Q psy8733 409 EIDNSDK 415 (621)
Q Consensus 409 ~L~~~~g 415 (621)
.|++++|
T Consensus 320 ~L~~~~~ 326 (405)
T PRK06207 320 VLRGVEG 326 (405)
T ss_pred HHhcCCC
Confidence 8876543
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-08 Score=107.66 Aligned_cols=126 Identities=10% Similarity=0.098 Sum_probs=84.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEecccccc-CCCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNI-GPAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~l-GP~G--lg~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++.+....+++ ..|++++|++|++ ||.| .|++++
T Consensus 128 i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~ 207 (378)
T TIGR01329 128 LGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAV 207 (378)
T ss_pred cCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEe
Confidence 45789999999999999999996 4568899999999987776433332 2359999999999 5877 899989
Q ss_pred chhHH-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 341 REDLL-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ--GGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 341 r~~ll-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~--gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+++.+ +++.+. . ...+ .+.+.... |+... .-++.+.++..+.+..+.+.|++.+.
T Consensus 208 ~~~~~~~~~~~~-------~---~~~G--~~~~~~~a--------~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~ 265 (378)
T TIGR01329 208 KGEEIAKKVYFL-------Q---NSTG--SGLAPFDC--------WLLLRGIKTLAIRIEKQQENARAIAMFLSTHPR 265 (378)
T ss_pred CcHHHHHHHHHH-------H---HhcC--CcCCHHHH--------HHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 76543 444210 0 0001 01111111 22222 14677778888888888888887764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.1e-08 Score=103.32 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=81.3
Q ss_pred CCceEEEEecccccccccccc-----ccc-cCCCcEEEecccccCCCc---ccc-cccc--eEEeccccccCCCc--cEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPD-SQGIPLVSDMSSNFLSRK---FDV-SKFG--VIIAGAQKNIGPAG--ITV 337 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~-~~g~llvvDavSs~G~~p---IDv-~~~g--vl~asaqK~lGP~G--lg~ 337 (621)
+++++|++|+-.|.||...+. +.+ ..++++|+|.+..-.... .++ ..++ +++.|-.|++|++| +|+
T Consensus 146 ~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~ 225 (354)
T PRK04635 146 DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGF 225 (354)
T ss_pred cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHHhh
Confidence 578999999999999999984 222 246899999985332211 122 1223 67889999999888 699
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHH---HHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ---NSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~---r~~~la~~L~e~L~~~~ 414 (621)
++.++++++.+..... .++.+ .... ..++.++.+. |.+.+.+ +.++..+++++.|++++
T Consensus 226 ~i~~~~~~~~l~~~~~-------------~~~~~-~~~~---~~a~~~l~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~ 287 (354)
T PRK04635 226 TLANEELIEILMRVIA-------------PYPVP-LPVS---EIATQALSEA-GLARMKFQVLDLNAQGARLQAALSMYG 287 (354)
T ss_pred hhCCHHHHHHHHhhcC-------------CCCCC-HHHH---HHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999876642111 11222 2222 2345566544 5554443 44555577888888775
Q ss_pred Cc
Q psy8733 415 KF 416 (621)
Q Consensus 415 g~ 416 (621)
++
T Consensus 288 ~~ 289 (354)
T PRK04635 288 GA 289 (354)
T ss_pred Cc
Confidence 44
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-07 Score=102.65 Aligned_cols=131 Identities=13% Similarity=0.184 Sum_probs=86.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCc------ccccc---cceEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK------FDVSK---FGVIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p------IDv~~---~gvl~asaqK~lGP 332 (621)
+.+++++|.+|+-.|.||...+. +++++++++|+|-+.+-.... ..+.. -.+++.|..|.+|.
T Consensus 151 ~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 230 (378)
T PRK07682 151 ITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAM 230 (378)
T ss_pred cCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccC
Confidence 45578999999889999998763 345789999999986644311 11122 12788888999998
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++.++++++++... . .....++|.....++..+|+.-. . -++++.++.+++.+++++.|
T Consensus 231 ~GlR~G~~~~~~~~i~~l~~~-------~-----~~~~~~~~~~~q~a~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~L 296 (378)
T PRK07682 231 TGWRLGFIAAPVYFSEAMLKI-------H-----QYSMMCAPTMAQFAALEALRAGN-D-DVIRMRDSYRKRRNFFVTSF 296 (378)
T ss_pred hhhhhhhhhcCHHHHHHHHHH-------H-----HhhccCCCHHHHHHHHHHHhCCh-H-HHHHHHHHHHHHHHHHHHHH
Confidence 89 89999999988876321 0 01112233334344333332111 1 26677778888888999999
Q ss_pred HccC
Q psy8733 411 DNSD 414 (621)
Q Consensus 411 ~~~~ 414 (621)
.+++
T Consensus 297 ~~~~ 300 (378)
T PRK07682 297 NEIG 300 (378)
T ss_pred HHCC
Confidence 8763
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-07 Score=99.39 Aligned_cols=184 Identities=13% Similarity=0.136 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccC
Q psy8733 62 LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMN 141 (621)
Q Consensus 62 ~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~ 141 (621)
++++.++++.+.+..-.-.| .....++.++.+++.++.+ +++++ +|||. +++++...++
T Consensus 9 ~~~~e~~a~~~~~~~~~~~~------------~g~~~~~~e~~la~~~g~~---~~v~~-~sgt~-----aL~~~l~al~ 67 (376)
T TIGR02379 9 VTGQELEYIAEAISEGKLSG------------DGPFSRRCETWLENRTGTK---KALLT-PSCTA-----ALEMAALLLD 67 (376)
T ss_pred CCHHHHHHHHHHHHcCCccC------------CcHHHHHHHHHHHHHhCCC---eEEEe-CCHHH-----HHHHHHHHcC
Confidence 56777888888763211000 1234566777888888874 47776 67898 6887777778
Q ss_pred CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCcc
Q psy8733 142 VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221 (621)
Q Consensus 142 ~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (621)
+++||+|++..- .|.+. ...+...|...+..+.. + ++
T Consensus 68 ~~pGd~Viv~~~----t~~~~-----------------------~~~~~~~G~~~v~vd~d----------~--~~---- 104 (376)
T TIGR02379 68 IQPGDEVIMPSY----TFVST-----------------------ANAFVLRGAKIVFVDIR----------P--DT---- 104 (376)
T ss_pred CCCcCEEEECCC----CcHHH-----------------------HHHHHHcCCEEEEEecC----------C--Cc----
Confidence 899999988754 23221 11223456543332211 0 00
Q ss_pred ccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc-----cccc
Q psy8733 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDS 296 (621)
Q Consensus 222 ~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~ 296 (621)
| .++++++ + -.+++++++|..+| .+|...|+ ++++
T Consensus 105 -------------~--~~d~~~l---------------------e-~~i~~~tk~Iip~~---~~G~~~d~~~I~~la~~ 144 (376)
T TIGR02379 105 -------------M--NIDETLI---------------------E-SAITHRTKAIVPVH---YAGVACDMDTIMALANK 144 (376)
T ss_pred -------------C--CCCHHHH---------------------H-HhcCcCceEEEEeC---CCCCccCHHHHHHHHHH
Confidence 0 0111111 1 13566899997765 46888885 4578
Q ss_pred CCCcEEEecccccCCCcccc---cccc-eEEecc--ccccC--CCccEEEEEchhHHhhhCC
Q psy8733 297 QGIPLVSDMSSNFLSRKFDV---SKFG-VIIAGA--QKNIG--PAGITVVIVREDLLEYALP 350 (621)
Q Consensus 297 ~g~llvvDavSs~G~~pIDv---~~~g-vl~asa--qK~lG--P~Glg~livr~~ll~~~~~ 350 (621)
+|+++|.|++|++|+. .+- ..++ +.++|. -|.+. +.|-.++.-++++.+++..
T Consensus 145 ~~i~vIeDaa~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~ 205 (376)
T TIGR02379 145 HQLFVIEDAAQGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEI 205 (376)
T ss_pred CCCEEEEECccccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHH
Confidence 9999999999999874 332 2332 444554 45563 4553344445777777654
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-08 Score=107.02 Aligned_cols=126 Identities=10% Similarity=0.027 Sum_probs=87.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC--cccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR--KFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~--pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|.+.+..+.+|...|+ +++++|++++||.+++.|.. |++. ..|+++.|++|++| +.+ .|+++
T Consensus 132 i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl~~-gaDivv~S~tK~l~G~~d~~gG~v~ 210 (377)
T TIGR01324 132 IQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPLEH-GVDISIQAGTKYLVGHSDIMIGTVV 210 (377)
T ss_pred cCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCcccc-CceEEEecCceeccCCCCceEEEEE
Confidence 56789999999999999999986 45688999999999999876 4432 12499999999995 665 57888
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
.+++.++++... ...++ +.+.+..+.+...++- +..+.+++.+.+..+.+.|++.+.
T Consensus 211 ~~~~~~~~l~~~-------------~~~~G~~l~p~~a~~~~rgl~t------l~~R~~~~~~~a~~la~~L~~~p~ 268 (377)
T TIGR01324 211 ANARTWDQLREH-------------SYLMGQMVDADDAYTTLRGLRT------LGVRLKQHQESSLAIAKWLSEQPE 268 (377)
T ss_pred eCHHHHHHHHHH-------------HHHhCCCCCHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888877654210 01112 2233444443334432 445567777778888888888763
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-08 Score=107.47 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=86.0
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEeccc--ccCCCcccccccceEEecccccc-CCCcc--EEEEEc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSS--NFLSRKFDVSKFGVIIAGAQKNI-GPAGI--TVVIVR 341 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavS--s~G~~pIDv~~~gvl~asaqK~l-GP~Gl--g~livr 341 (621)
+++++|++++-.|.+|...|+ +++++|++++||.++ ..+..|+++. .|+++.|.+|++ ||+|+ |+++.+
T Consensus 131 ~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~~g-~Divv~S~sK~l~G~~g~~~G~v~~~ 209 (366)
T PRK07582 131 AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELG-ADLVVASDTKALTGHSDLLLGYVAGR 209 (366)
T ss_pred cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchhcC-CcEEEecccccccCCCCeeEEEEEcC
Confidence 578999999888899988875 346789999999985 4777888753 369999999999 58884 888875
Q ss_pred -hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 342 -EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 342 -~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++++++.. +.. ..-.+++.+..+.+...++ -++.+.+++.+.+..+.+.|++.+.+
T Consensus 210 ~~~l~~~l~~-------~~~-----~~g~~~~~~~a~l~~r~l~------tl~~R~~~~~~na~~la~~L~~~p~v 267 (366)
T PRK07582 210 DPELMAAVER-------WRL-----LAGAIPGPFEAWLAHRSLG------TLGLRFARQCANALAVAELLAGHPAV 267 (366)
T ss_pred cHHHHHHHHH-------HHH-----HhCCCCCHHHHHHHHhccc------cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 566554421 111 0112343333333222222 25566677788889999999987743
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-06 Score=95.99 Aligned_cols=126 Identities=13% Similarity=0.146 Sum_probs=82.6
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc-----------c-cccccceEEeccccccCCCc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK-----------F-DVSKFGVIIAGAQKNIGPAG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p-----------I-Dv~~~gvl~asaqK~lGP~G 334 (621)
+++++|.+-...+.+|...|+ +++++|+++++|-++++|..- + .....|+++.|-.|.+||.|
T Consensus 137 ~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g 216 (392)
T PLN03227 137 DQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG 216 (392)
T ss_pred CCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC
Confidence 467888877777778999885 457899999999999866320 1 12244688888889999775
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCC--chHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNT--PPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~T--P~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
|++..++++.+.... .....++++ ||... ++..++++.+.+. +.+.++.+++.+++++.|.+
T Consensus 217 -g~v~~~~~~~~~~~~-----------~~~~~~~~~~~~p~~~-~aa~~al~~~~~~---~~~~~~l~~~~~~l~~~L~~ 280 (392)
T PLN03227 217 -GMTVGSEEVVDHQRL-----------SGSGYCFSASAPPFLA-KADATATAGELAG---PQLLNRLHDSIANLYSTLTN 280 (392)
T ss_pred -cEEecCHHHHHHHHH-----------hCcCccccCCCCHHHH-HHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHh
Confidence 455678887654321 112334543 34333 3333455444332 45677788899999999986
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
.
T Consensus 281 ~ 281 (392)
T PLN03227 281 S 281 (392)
T ss_pred c
Confidence 3
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.7e-07 Score=102.61 Aligned_cols=146 Identities=13% Similarity=0.074 Sum_probs=100.7
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc--------ccccceEEeccccccC-CCccEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD--------VSKFGVIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID--------v~~~gvl~asaqK~lG-P~Glg~l 338 (621)
.+-+|+.+...|.+|..=|+ +++++|+.++|||+-+-.....+ ++..|-+....|||++ |.+.|++
T Consensus 287 ~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~l 366 (539)
T PLN02590 287 IPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPL 366 (539)
T ss_pred CcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEE
Confidence 35688999999999999886 55789999999987654443332 2333589999999997 9999999
Q ss_pred EEchhH-HhhhCCCCCceeeccccc-------cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 339 IVREDL-LEYALPITPTVFHFKINA-------DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 339 ivr~~l-l~~~~~~~P~~ld~~~~~-------~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
++|+.- +.+.....|.|+...... ...+...+-. +...-+-.+|+.+-.+ |+.++.+++.++++++.+.|
T Consensus 367 lvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr-~raLklW~~lr~~G~~-G~~~~i~~~~~lA~~~~~~l 444 (539)
T PLN02590 367 WVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRR-FRSLKLWMVLRLYGSE-NLRNFIRDHVNLAKHFEDYV 444 (539)
T ss_pred EecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCc-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999752 222222234444221100 0001111111 3445566778888777 89999999999999999999
Q ss_pred HccCCcccCc
Q psy8733 411 DNSDKFYECP 420 (621)
Q Consensus 411 ~~~~g~~~~~ 420 (621)
.+.++|++..
T Consensus 445 ~~~~~fel~~ 454 (539)
T PLN02590 445 AQDPSFEVVT 454 (539)
T ss_pred hcCCCeEEec
Confidence 9998887653
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.7e-07 Score=97.54 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=74.5
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC-----C-----cccccccc--eEEeccccccCCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS-----R-----KFDVSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~-----~-----pIDv~~~g--vl~asaqK~lGP~ 333 (621)
.++++++.+++..+++|...|. +++++|+++|+|.+++++. . .++....+ +++.|.-|.+|.+
T Consensus 177 ~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~ 256 (402)
T PRK07505 177 KTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS 256 (402)
T ss_pred hcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc
Confidence 3456788888777888988885 4568899999999986531 1 12221123 6677888999866
Q ss_pred ccEEEEE-chhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy8733 334 GITVVIV-REDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 399 (621)
Q Consensus 334 Glg~liv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~ 399 (621)
| |++.+ ++++.+.+... ....++ ++|+..++.++.++++.+.+. .+..+.++.
T Consensus 257 G-g~~~~~~~~~~~~~~~~-----------~~~~t~~~~~~~~a~aa~~a~l~~~~~~-~~~~~~~~l 311 (402)
T PRK07505 257 G-GVIMLGDAEQIELILRY-----------AGPLAFSQSLNVAALGAILASAEIHLSE-ELDQLQQKL 311 (402)
T ss_pred C-eEEEeCCHHHHHHHHHh-----------CCCceeCCCCCHHHHHHHHHHHHHHhcc-CcHHHHHHH
Confidence 7 66655 56666554321 112233 356777888888888877665 555444433
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.7e-07 Score=96.85 Aligned_cols=127 Identities=14% Similarity=0.144 Sum_probs=80.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCC----Ccc--c-ccccc--eEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLS----RKF--D-VSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~----~pI--D-v~~~g--vl~asaqK~lGP~ 333 (621)
+++++++|.+|+..+.||...+. +.+ .+++++|+|-+-.-.. .+- . ++..+ +++.|-=|.+|.+
T Consensus 148 ~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 227 (359)
T PRK03158 148 IDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLA 227 (359)
T ss_pred cCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCc
Confidence 45678999999999999999985 333 2589999999875322 111 1 12334 6667778999999
Q ss_pred cc--EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 GI--TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 Gl--g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
|+ |+++.++++++++.... ..++ ++....+++..+++ +..=++.+.++.++..+.+++.|+
T Consensus 228 GlRiG~~v~~~~~~~~~~~~~-------------~~~~-~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~ 290 (359)
T PRK03158 228 ALRVGYGIASEELIEKLNIAR-------------PPFN-TTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCK 290 (359)
T ss_pred chhhehhcCCHHHHHHHHHhc-------------CCCC-CCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 99999999887664211 1123 34444444444443 210144555556666667777777
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
+.
T Consensus 291 ~~ 292 (359)
T PRK03158 291 EY 292 (359)
T ss_pred HC
Confidence 65
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.2e-07 Score=99.46 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=54.3
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc--ccccc---eEEeccccccC-CCccEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD--VSKFG---VIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID--v~~~g---vl~asaqK~lG-P~Glg~l 338 (621)
+++++++|.++|. .|...++ +++++|+++|+|++|++|+..-+ +-.+| +..+.+.|.+. -.| |+|
T Consensus 156 i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~~fSf~~~k~~~~geG-G~l 231 (438)
T PRK15407 156 VSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIATLSFYPAHHITMGEG-GAV 231 (438)
T ss_pred cCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccCceEEEeCCCCCCccccCc-eEE
Confidence 5678999999983 5776664 45789999999999999997755 33454 44555667773 457 899
Q ss_pred EEchhHHhh
Q psy8733 339 IVREDLLEY 347 (621)
Q Consensus 339 ivr~~ll~~ 347 (621)
+.+++.+.+
T Consensus 232 ~t~d~~l~~ 240 (438)
T PRK15407 232 FTNDPLLKK 240 (438)
T ss_pred EECCHHHHH
Confidence 998776643
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-07 Score=105.41 Aligned_cols=146 Identities=15% Similarity=0.067 Sum_probs=90.6
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc-----ccc---ccceEEeccccccC-CCccEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF-----DVS---KFGVIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI-----Dv~---~~gvl~asaqK~lG-P~Glg~l 338 (621)
.+-+|..+...|.+|..-|+ +++++|+.++||++.+.+.... .++ ..|.+....|||++ |.|.|++
T Consensus 239 ~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~l 318 (490)
T PLN02880 239 IPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLL 318 (490)
T ss_pred ccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEE
Confidence 35678889999999999996 5678999999999988876544 233 34699999999997 9999999
Q ss_pred EEchhHH-hhhCCCCCceeeccccccCCCcc----CCchH---HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 339 IVREDLL-EYALPITPTVFHFKINADNNSVY----NTPPT---FVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 339 ivr~~ll-~~~~~~~P~~ld~~~~~~~~s~~----~TP~v---~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
++|+... .+.....+.|+....... ...+ .|++. +....+-.+|+.+-.+ |+.++..+..++++++.+.|
T Consensus 319 lvr~~~~l~~~~~~~~~Yl~~~~~~~-~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~-g~~~~i~~~~~lA~~~~~~l 396 (490)
T PLN02880 319 WVKDRNALIQSLSTNPEFLKNKASQA-NSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVE-NLQSYIRNHIKLAKEFEQLV 396 (490)
T ss_pred EEeCHHHHHHHHccCHHHhcCccccc-cCCCChhccCcCCCCcccHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9996432 111112233331110000 0001 01100 0111222234443223 45555555559999999999
Q ss_pred HccCCcccCc
Q psy8733 411 DNSDKFYECP 420 (621)
Q Consensus 411 ~~~~g~~~~~ 420 (621)
++.++|.+..
T Consensus 397 ~~~~~~el~~ 406 (490)
T PLN02880 397 AQDSRFEVVT 406 (490)
T ss_pred hcCCCEEEec
Confidence 9988777653
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.9e-08 Score=104.26 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=59.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-c-cc-ccccc--eEEeccccccCCCc--cEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-K-FD-VSKFG--VIIAGAQKNIGPAG--ITV 337 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-p-ID-v~~~g--vl~asaqK~lGP~G--lg~ 337 (621)
+++++++|.+++..+.||...|. +++.+++++|+|.+..-... + .. +++++ +++.|--|.+|.+| +|+
T Consensus 155 ~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~ 234 (361)
T PRK00950 155 ITEKTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGY 234 (361)
T ss_pred hccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcch
Confidence 34578999999999999999985 45677999999999864331 1 11 12334 55677789999888 799
Q ss_pred EEEchhHHhhhC
Q psy8733 338 VIVREDLLEYAL 349 (621)
Q Consensus 338 livr~~ll~~~~ 349 (621)
++.++++.+.+.
T Consensus 235 ~~~~~~~~~~~~ 246 (361)
T PRK00950 235 GFVPEWLIDYYM 246 (361)
T ss_pred hcCCHHHHHHHH
Confidence 998888876553
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-06 Score=95.60 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=79.0
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc-ccc---ccc-c-eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK-FDV---SKF-G-VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p-IDv---~~~-g-vl~asaqK~lGP 332 (621)
+++++++|.+++-.|.||...+. +++++|+++|+|.+-+-.. .+ ..+ +.. . +++.|--|.++.
T Consensus 166 ~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 245 (403)
T TIGR01265 166 ADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVV 245 (403)
T ss_pred hCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCC
Confidence 45678999999999999998862 3457899999999865322 11 122 222 2 677888999987
Q ss_pred Cc--cEEEEEch--hH-----HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVRE--DL-----LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKS 403 (621)
Q Consensus 333 ~G--lg~livr~--~l-----l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la 403 (621)
+| +|++++.+ ++ ++.+.. + ......++.....++..+|+.-. .+=+++..++.++..
T Consensus 246 pGlRiG~~v~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~ 311 (403)
T TIGR01265 246 PGWRLGWIIIHDPHGIFRDTVLQGLKN-------L------LQRILGPATIVQGALPDILENTP-QEFFDGKISVLKSNA 311 (403)
T ss_pred CcceEEEEEEeCchhhhHHHHHHHHHH-------H------hhhhcCCChHHHHHHHHHHHhCh-HHHHHHHHHHHHHHH
Confidence 77 78887742 22 221110 0 00111234455555555554211 101455566666667
Q ss_pred HHHHHHHHccCCc
Q psy8733 404 VLLYQEIDNSDKF 416 (621)
Q Consensus 404 ~~L~e~L~~~~g~ 416 (621)
+.+.+.|+..+|+
T Consensus 312 ~~l~~~L~~~~~~ 324 (403)
T TIGR01265 312 ELCYEELKDIPGL 324 (403)
T ss_pred HHHHHHHhcCCCc
Confidence 7788888776433
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-09 Score=113.63 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=124.9
Q ss_pred HHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC-----CCceeeeee---cc---cCCCccCCCchhHHHHHHHHHHHH
Q psy8733 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI-----TPTVFHFKI---NA---DNNSVYNTPPTFVVHVIQRVFAWI 516 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~-----~p~~~~y~~---~~---~~~s~~nTP~~~~iy~~~~vl~~~ 516 (621)
.|++++|+||.|| |.|++++++|++++++..+. .|..++|.. .. ..++++||||++.+|.+...|+|+
T Consensus 185 iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l 264 (378)
T PRK03080 185 LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWA 264 (378)
T ss_pred CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHH
Confidence 6999999999996 89999999999999875543 355565554 11 236799999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHhccCCc--ccc-cCCCC---------C---cccHHHHHHHHHccCcc-ccCCCC-C
Q psy8733 517 KRQGGLAKMEQNSLQKSVLLYQEIDNSDKF--YEC-PVQAG---------F---PLDELFLKEAKAHNMIQ-LKGHRL-V 579 (621)
Q Consensus 517 ~~~gg~~~~~~~~~~ka~~lY~~id~~~~~--~~~-~v~~~---------~---~~~~~~~~~~~~~~i~~-~~g~~~-~ 579 (621)
++.||++.++++.++.++.+|+.+++.+++ |.. +-..+ . ..+..+++.+.++||+. ..+|+. .
T Consensus 265 ~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~ 344 (378)
T PRK03080 265 NSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAP 344 (378)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCC
Confidence 999999999999999999999999987642 211 10111 0 02344666666667764 456765 6
Q ss_pred CccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 580 GGIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 580 ~~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
+.||+|.+...+.||++.|++.|++..++
T Consensus 345 ~~vRis~~~~~t~~di~~l~~al~~~~~~ 373 (378)
T PRK03080 345 NGLRIWCGPTVEPADVEALTPWLDWAFER 373 (378)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999987654
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.4e-07 Score=96.99 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=82.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccc---cCCCccccccc--c--eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN---FLSRKFDVSKF--G--VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs---~G~~pIDv~~~--g--vl~asaqK~lGP~G 334 (621)
++++++++++++..|+||...+. +++++++++|+|.+.. .+..+..+..+ + +++.|-.|.+|.+|
T Consensus 133 ~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 212 (350)
T TIGR03537 133 ILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTG 212 (350)
T ss_pred hhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCcc
Confidence 44578999999999999998883 3457899999999875 33333333222 3 66668899999888
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|+++.++++.+++... . .....++++. ..+++.+++. ...-++.+.++.+++.+.+.+.|+.
T Consensus 213 lRiG~~~~~~~~~~~~~~~-------~----~~~~~~~~~~-~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~~~~l~~ 277 (350)
T TIGR03537 213 YRSGFVAGDEKLISFLRKL-------R----ANFGVASPDF-VQAAAKAAWS---DDNHVLERRKIFKRKRDLFIEFFNK 277 (350)
T ss_pred ccceeeecCHHHHHHHHHH-------H----HhhccCCCHH-HHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89898888877655321 0 0111233332 2233333332 2213556667777777788888876
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
.
T Consensus 278 ~ 278 (350)
T TIGR03537 278 V 278 (350)
T ss_pred C
Confidence 5
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=102.87 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=82.0
Q ss_pred CCCCceEEEEecccccccccccc-----c---cccCCCcEEEecccccC---CCccccccc--c-eEEeccccccCCCc-
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----I---PDSQGIPLVSDMSSNFL---SRKFDVSKF--G-VIIAGAQKNIGPAG- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i---~~~~g~llvvDavSs~G---~~pIDv~~~--g-vl~asaqK~lGP~G- 334 (621)
++++++++.+++-.|.||...+. + ++++++++|+|-+-.-. ..+..+-.. . +++.|-.|.+|.+|
T Consensus 162 ~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl 241 (387)
T PRK08960 162 WNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGW 241 (387)
T ss_pred hCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCccc
Confidence 45678899999999999999884 2 45789999999863211 111111122 2 78899999999999
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-WIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|+++.++++++++..... .. ..+++.+...++..+++ ...+ -++.+.+..+++.+.+++.|++
T Consensus 242 RiG~~~~~~~~~~~~~~~~~-----------~~-~~~~s~~~q~a~~~~l~~~~~~--~l~~~~~~~~~~~~~l~~~L~~ 307 (387)
T PRK08960 242 RLGWLVAPPAAVPELEKLAQ-----------NL-YISASTPAQHAALACFEPETLA--ILEARRAEFARRRDFLLPALRE 307 (387)
T ss_pred EEEEEEcCHHHHHHHHHHHh-----------hh-ccCCCHHHHHHHHHHhhcCcHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998876532110 01 11223333333333332 1111 2455566667777788888887
Q ss_pred cC
Q psy8733 413 SD 414 (621)
Q Consensus 413 ~~ 414 (621)
.+
T Consensus 308 ~~ 309 (387)
T PRK08960 308 LG 309 (387)
T ss_pred cC
Confidence 53
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=103.43 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=83.6
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc---cEEEEEc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG---ITVVIVR 341 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G---lg~livr 341 (621)
++++++|++++..|.+|...|+ +++++|+++|+|.+.+.+....+++ ..++++.|.+|++|..| .|+++.+
T Consensus 128 ~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~ 207 (376)
T PRK06460 128 SKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGY 207 (376)
T ss_pred CCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecC
Confidence 5689999999999999999996 4567899999999987552211111 13499999999996433 7888888
Q ss_pred hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 342 EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 342 ~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++++++..... ....+.++ ...+.+...++|+. .+.++..+.+.++.+.|++.+.+
T Consensus 208 ~~l~~~l~~~~~-----------~~g~~~~~-~~a~~~l~~~~~l~------~r~~~~~~n~~~l~~~L~~~p~v 264 (376)
T PRK06460 208 GKLLNVIDQMRR-----------TLGTSLDP-HAAYLTLRGIKTLK------IRMDVINRNAEQIAEFLEGHPKV 264 (376)
T ss_pred HHHHHHHHHHHH-----------hcCCCCCH-HHHHHHHhchhhHH------HHHHHHHHHHHHHHHHHHcCCCc
Confidence 887766532100 00011222 23333334455553 44556677778888888887643
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-07 Score=103.66 Aligned_cols=128 Identities=15% Similarity=0.178 Sum_probs=84.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEeccccc--CCCcccccccceEEeccccccCCCc--c-EEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNF--LSRKFDVSKFGVIIAGAQKNIGPAG--I-TVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~--G~~pIDv~~~gvl~asaqK~lGP~G--l-g~li 339 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++. +..|+++. .|+++.|.+|++|.+| + |+++
T Consensus 136 i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl~~g-~Divv~S~sK~l~g~g~~~gG~vv 214 (380)
T TIGR01325 136 VKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPLKLG-ADVVVYSATKHIDGQGRVMGGVIA 214 (380)
T ss_pred cCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhC-CCEEEeeccceecCCCCeEEEEEE
Confidence 45679999999988999999886 45678999999999864 44555432 3589999999998665 3 6777
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.++++++++... . .. ...+.+.+..+.+...++. ++.+.+++.+.+..+.+.|++.|++
T Consensus 215 ~~~~~~~~l~~~-------~---~~--~g~~~~p~~a~~~l~~l~t------l~~r~~~~~~~a~~la~~L~~~p~v 273 (380)
T TIGR01325 215 GSEELMAEVAVY-------L---RH--TGPAMSPFNAWVLLKGLET------LSLRMQKQFDSALAIAEWLQAQPQV 273 (380)
T ss_pred eCHHHHHHHHHH-------H---Hh--hCCCCCHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 788876654310 0 00 1112222222222223332 4555666777888888888888754
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.4e-08 Score=105.91 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=82.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc--cE-EEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG--IT-VVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G--lg-~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++.+...-.++ ..|+++.|.+|++|.+| +| +++.
T Consensus 147 i~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~ 226 (398)
T PRK07504 147 VRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLS 226 (398)
T ss_pred cCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEe
Confidence 56789999999999999999996 4567899999999998665432221 12499999999997544 55 5555
Q ss_pred chhHHhh-hCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 REDLLEY-ALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~~ll~~-~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++.+.+ +. ++... .+ .+++-+..+.+...|+- ++.+.++..+.+..+.+.|++.+++
T Consensus 227 ~~~~i~~~~~-------~~~~~--~g---~~~s~~~A~~~l~~L~t------l~~R~~~~~~na~~la~~L~~~p~v 285 (398)
T PRK07504 227 DKAWIEEHLQ-------DYFRH--TG---PSLSPFNAWTLLKGLET------LPVRVRQQTESAAAIADFLAGHPKV 285 (398)
T ss_pred CcHHHHHHHH-------HHHHH--hC---CCCCHHHHHHHHhccch------HHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 5655542 11 01000 01 12333333332233332 4556666778888899999987754
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-06 Score=94.76 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=84.7
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCcccc---cccc---eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKFDV---SKFG---VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pIDv---~~~g---vl~asaqK~lG 331 (621)
+++++++|.+++-.+.||...+. +++++++++|+|.+-+-. ..+... ...+ +.+.|..|.+|
T Consensus 160 ~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 239 (386)
T PRK07550 160 ITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYA 239 (386)
T ss_pred hcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhcc
Confidence 34578888888888899998873 345789999999975321 112211 1122 67899999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++++++.... .....+++.....++..+++-+.+. ++...++.+++.+.+++.
T Consensus 240 ~~G~RiG~i~~~~~~~~~~~~~~------------~~~~~~~s~~~q~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~~ 305 (386)
T PRK07550 240 LTGHRVGAVVASPARIAEIEKFM------------DTVAICAPRIGQIAVAWGLPNLADW--RAGNRAEIARRRDAFRAV 305 (386)
T ss_pred CcccceEeeecCHHHHHHHHHHH------------hhcccCCCcHHHHHHHHHhccHHHH--HHHHHHHHHHHHHHHHHH
Confidence 777 899999988876653210 0112234445555555565543332 455666777777888888
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|+..+
T Consensus 306 L~~~~ 310 (386)
T PRK07550 306 FARLP 310 (386)
T ss_pred HHhCC
Confidence 87754
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=103.71 Aligned_cols=129 Identities=10% Similarity=0.037 Sum_probs=85.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEecccccc-CCCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNI-GPAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~l-GP~G--lg~liv 340 (621)
+++++++|++++-.|++|...|+ +++++|+++|+|.+...+....+++ ..|+++.|.+|++ |+.| .|+++.
T Consensus 134 l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~ 213 (386)
T PRK08045 134 LAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIA 213 (386)
T ss_pred cccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEe
Confidence 45689999999999999999986 4567899999999987765433332 1259999999999 5877 566666
Q ss_pred c-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 R-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+ +++.+++.. +.. ....+++.+..+.+..+|+ -++.+.+++.+.+..|.+.|++.+.+
T Consensus 214 ~~~~~~~~l~~-------~~~-----~~g~~~~p~~~~l~~rgl~------tl~~R~~~~~~na~~la~~L~~~p~v 272 (386)
T PRK08045 214 KDPDVVTELAW-------WAN-----NIGVTGGAFDSYLLLRGLR------TLVPRMELAQRNAQAIVKYLQTQPLV 272 (386)
T ss_pred CcHHHHHHHHH-------HHH-----hcCCCCCHHHHHHHHhhhc------cHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 4 555444310 000 1112233333333333333 25666777888888888999987743
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=104.32 Aligned_cols=126 Identities=14% Similarity=0.118 Sum_probs=85.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccccc--eEEecccccc-CCCc--cEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSKFG--VIIAGAQKNI-GPAG--ITV 337 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~~g--vl~asaqK~l-GP~G--lg~ 337 (621)
+++++++|++.+..|.+|...|+ +++++|++++||.+++.+ ..|+ ++| +++.|++||+ |+.. .|+
T Consensus 143 l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl---~~GaDivv~S~tK~l~Gh~d~~~G~ 219 (394)
T PRK09028 143 IRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPF---EMGVDISIQAATKYIVGHSDVMLGT 219 (394)
T ss_pred cCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCcc---ccCceEEEEeCCeEecCCCCEEEEE
Confidence 56789999999999999999886 456899999999999887 3444 455 9999999999 5643 345
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++.+++.++++.. +.. ..-.+++.+..+.+...|+ -+.-+.+++.+.+..+-+.|++.+.+
T Consensus 220 ~~~~~~~~~~l~~-------~~~-----~~G~~~~p~~a~l~~rgl~------TL~lR~~~~~~na~~la~~L~~~p~v 280 (394)
T PRK09028 220 ATANEKHWDQLRE-------HSY-----LMGQCTSPDDVYLAMRGLR------TLGVRLAQHEKNALKVANWLATRPEV 280 (394)
T ss_pred EECCHHHHHHHHH-------HHH-----hcCCCCCHHHHHHHHcccC------cHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5666666654421 000 0112333333332222222 36677788888889999999988743
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=103.78 Aligned_cols=129 Identities=14% Similarity=0.079 Sum_probs=84.0
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc--c-EEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG--I-TVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G--l-g~liv 340 (621)
+++++++|++++-.+.+|...|+ +++++|+++|+|.+++.+...-.+. ..|+++.|.+|++|+.| + |+++.
T Consensus 146 i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~ 225 (398)
T PRK08249 146 IAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCG 225 (398)
T ss_pred cCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEEC
Confidence 56789999998888999999996 4568999999999988654321222 23488899999998654 3 66666
Q ss_pred chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++++++++.. +.. ..-.+++.+..+.+...++. ++.+.+++.+.+..+.+.|++.+.+
T Consensus 226 ~~~l~~~l~~-------~~~-----~~g~~~s~~~a~l~l~~l~t------L~~R~~~~~~na~~la~~L~~~p~v 283 (398)
T PRK08249 226 SKELMEQVYH-------YRE-----INGATMDPMSAYLILRGMKT------LKLRVRQQQESAMALAKYLQTHPKV 283 (398)
T ss_pred CHHHHHHHHH-------HHH-----hcCCCCCHHHHHHHHhCcch------HHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 7777665532 110 01123333333333333333 3445566677888888899887743
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.3e-08 Score=104.53 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=87.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc---cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG---ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G---lg~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+.+.+....+++ ..|+++.|.+|++|.+| .|+++.
T Consensus 143 i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~ 222 (386)
T PRK06767 143 IRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTIC 222 (386)
T ss_pred hCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEe
Confidence 45689999999999999999986 4567899999999988554433332 23589999999997555 588999
Q ss_pred chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 341 REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 341 r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
+++.++++.... .. ...+..+.+..+. ++.-+ .-++.+.++.++.+..+.+.|++.+++.
T Consensus 223 ~~~~i~~~~~~~------~~-----~~g~~~~~~~a~l---~~~~L---~tl~~r~~~~~~~a~~la~~L~~~p~v~ 282 (386)
T PRK06767 223 KTRALAEKIRPM------RK-----DIGGIMAPFDAWL---LLRGL---KTLAVRMDRHCDNAEKIVSFLKNHDAVE 282 (386)
T ss_pred ChHHHHHHHHHH------HH-----HhCCCCCHHHHHH---HHcCC---CcHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 988876542100 00 0011112122222 12212 1355667778889999999999988654
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=103.87 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=84.7
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc---cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG---ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G---lg~liv 340 (621)
+++++++|++++-.+.+|...|+ +++++|+++|+|.+++.+.....+. ..|+++.|.+|++|++| .|+++.
T Consensus 147 i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~ 226 (403)
T PRK07503 147 ISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVG 226 (403)
T ss_pred cCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEc
Confidence 45689999999888999999986 4568899999999998654332332 12489999999998766 688888
Q ss_pred chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++++++++... .+.. ..-..++....+. ++..++. ++.+.+++.+.+..+.+.|++.+.+
T Consensus 227 ~~~l~~~l~~~-----~~~~-----~~g~~~s~~~a~l---~l~~L~t---l~~r~~~~~~na~~~a~~L~~~p~v 286 (403)
T PRK07503 227 GKALADRIRLE-----GLKD-----MTGAVMSPFDAFL---LMRGLKT---LALRMDRHCASAQAVAEWLARHPAV 286 (403)
T ss_pred CHHHHHHHHhh-----hHHh-----CcCCCCCHHHHHH---HHcCcch---HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88887766321 0000 0012222222222 2222221 4455566667888888888887643
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-07 Score=103.14 Aligned_cols=128 Identities=9% Similarity=0.007 Sum_probs=85.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++-.|.+|...|+ +++++|+++|+|.+.+.+. .|+++ ..|+++.|++|+++ |.| .|.++
T Consensus 142 i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~~-gaDivv~S~tK~l~g~~~~~~G~vv 220 (405)
T PRK08776 142 LAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEF-GADLVLHSTTKYINGHSDVVGGAVV 220 (405)
T ss_pred cCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcccc-cCCEEEecCceeecCCCCceEEEEE
Confidence 45689999999999999999885 3567899999999987665 34432 12499999999996 665 46666
Q ss_pred Ec-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+ +++.+++.. +.. . .-.+++.+..+.+...++|+. .+.++..+.+..+.+.|++.+.+
T Consensus 221 ~~~~~l~~~l~~-------~~~---~--~g~~~s~~~a~l~~~gl~tl~------~r~~~~~~na~~la~~L~~~p~v 280 (405)
T PRK08776 221 ARDAELHQQLVW-------WAN---A--LGLTGSPFDAFLTLRGLRTLD------ARLRVHQENADAIAALLDGHAAV 280 (405)
T ss_pred eCCHHHHHHHHH-------HHH---h--cCCCCCHHHHHHHHhhhCcHH------HHHHHHHHHHHHHHHHHHcCCCe
Confidence 64 444444321 010 0 111345555555556666653 45566677778888888887743
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=104.36 Aligned_cols=128 Identities=9% Similarity=0.065 Sum_probs=86.3
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC--cccccccceEEeccccccCCCc---cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR--KFDVSKFGVIIAGAQKNIGPAG---ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~--pIDv~~~gvl~asaqK~lGP~G---lg~li 339 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+.+.+.. |+++. .|+++.|++|++|..| .|+++
T Consensus 152 i~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~g-aDivv~S~tK~l~g~g~~~gG~v~ 230 (403)
T PRK07810 152 LSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLG-ADVVVYSGTKHIDGQGRVLGGAIL 230 (403)
T ss_pred cCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChhhcC-CcEEEccCCceecCCcCceeEEEE
Confidence 56789999999999999999886 45688999999999987654 54432 3699999999998666 48888
Q ss_pred EchhHHhh-hCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLEY-ALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~~-~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+++.+.. +.. + .. ..-.+++.+..+.+...|+- ++.+.++..+.+..+.+.|++.+++
T Consensus 231 ~~~~~~~~~l~~----~---~~-----~~g~~~s~~~a~l~l~~L~t------l~~R~~~~~~~a~~~a~~L~~~p~v 290 (403)
T PRK07810 231 GDREYIDGPVQK----L---MR-----HTGPALSAFNAWVLLKGLET------LALRVRHSNASALRIAEFLEGHPAV 290 (403)
T ss_pred eChHHHHHHHHH----H---HH-----HhCCCCCHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88776642 210 0 00 01113333333333333332 5566677777788888888887754
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-07 Score=97.01 Aligned_cols=126 Identities=15% Similarity=0.250 Sum_probs=83.5
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCC---Cccccccc----ceEEeccccccCC-Ccc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLS---RKFDVSKF----GVIIAGAQKNIGP-AGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~---~pIDv~~~----gvl~asaqK~lGP-~Gl 335 (621)
++++|.+.++.+.+|...| + +++++|+++++|-+++-.. .....+.+ +++.+| |++|. -.+
T Consensus 191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~s--K~l~~g~~~ 268 (413)
T cd00610 191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLG--KGLGGGLPL 268 (413)
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeEEEc--ccccCcccc
Confidence 5788888888888898776 2 3567999999999976331 12222223 355555 99963 348
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|.++.++++.+.+. ..+ .....++.. +.....+..++|+++.+. .+.++.+++.+++++.|+++.
T Consensus 269 g~~~~~~~~~~~~~-~~~--------~~~~~t~~~-~~~~~~a~~a~l~~l~~~----~~~~~~~~~~~~l~~~l~~~~ 333 (413)
T cd00610 269 GAVLGREEIMDAFP-AGP--------GLHGGTFGG-NPLACAAALAVLEVLEEE----GLLENAAELGEYLRERLRELA 333 (413)
T ss_pred EEEEEcHHHHHhhc-cCC--------CCCCCCCCc-CHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887641 000 011223333 344567788889988763 456778888888888888753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=103.04 Aligned_cols=128 Identities=14% Similarity=0.163 Sum_probs=86.7
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC--cccccccceEEeccccccCCCc---cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR--KFDVSKFGVIIAGAQKNIGPAG---ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~--pIDv~~~gvl~asaqK~lGP~G---lg~li 339 (621)
+++++++|++.+..+.+|...|+ +++++|+++++|.+.+.+.. |++. ..|+++.|.+|++|.+| .|+++
T Consensus 122 i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~~~~-g~Divv~S~tK~l~g~~~~~gG~v~ 200 (369)
T cd00614 122 IKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLEL-GADIVVHSATKYIGGHSDVIAGVVV 200 (369)
T ss_pred cCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCChhhh-CCcEEEeccceeccCCCCceEEEEE
Confidence 45579999999989999999986 45689999999999877653 3332 23599999999997555 68888
Q ss_pred Ech-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.++ ++++++.... . ..-.+++....+.+ ++-++ .++.+.+++.+.+.++.+.|++.+++
T Consensus 201 ~~~~~l~~~l~~~~-------~-----~~g~~~~p~~a~~~---l~~l~---tl~~r~~~~~~na~~la~~L~~~~~v 260 (369)
T cd00614 201 GSGEALIQRLRFLR-------L-----ALGTILSPFDAWLL---LRGLK---TLPLRMERHSENALKVAEFLEKHPKV 260 (369)
T ss_pred eCcHHHHHHHHHHH-------H-----hhCCCCCHHHHHHH---HcCCC---CHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 877 7766553210 0 01112222332322 22221 35667778888899999999988754
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=103.48 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=80.5
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEEEEc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVVIVR 341 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~livr 341 (621)
+++++|++++..+.++...|+ +++++|+++|+|.+.+.+. .|++. ..|+++.|.+|+++ |.| .|+++.+
T Consensus 146 ~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~~~-g~Divv~S~tK~l~g~~~~~gG~i~~~ 224 (389)
T PRK05968 146 PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPITL-GVDLVIHSASKYLGGHSDTVAGVVAGS 224 (389)
T ss_pred ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCchhc-CCcEEEeeccccccCCCCeEEEEEEEC
Confidence 468888886544444444554 3467899999999987774 35443 23588899999996 654 6888889
Q ss_pred hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 342 EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 342 ~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++++++......++ + .+.+-+..+.+ +..++ .++.+.+++.+.+..+.+.|++.+++
T Consensus 225 ~~~~~~l~~~~~~~~--------g---~~~~~~~A~~~---l~~L~---tl~~r~~~~~~~a~~la~~L~~~p~v 282 (389)
T PRK05968 225 KEHIARINAEAYPYL--------G---AKLSPFEAWLL---LRGLR---TLPLRMKAHEASALEIARRLKAHPVV 282 (389)
T ss_pred HHHHHHHHHHHHHhC--------C---CCCChHHHHHH---HcccC---cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 988876642111011 1 11111222222 33332 46677777778899999999988754
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.2e-08 Score=105.97 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=59.0
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc--cEEEEEc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG--ITVVIVR 341 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G--lg~livr 341 (621)
+++++++|++.+..+.+|...|+ +++++|+++|||++++.+...-.++ ..|+++.|+||++|+.| +|.+++.
T Consensus 152 i~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~ 231 (436)
T PRK07812 152 VRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVD 231 (436)
T ss_pred CCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEc
Confidence 56789999999999999999997 4568999999999998765544442 13499999999998666 7777775
Q ss_pred hh
Q psy8733 342 ED 343 (621)
Q Consensus 342 ~~ 343 (621)
.+
T Consensus 232 ~~ 233 (436)
T PRK07812 232 GG 233 (436)
T ss_pred CC
Confidence 43
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-06 Score=93.26 Aligned_cols=72 Identities=11% Similarity=0.238 Sum_probs=48.9
Q ss_pred CCCCceEEEEeccccccccccc---c-----ccccCCCcEEEecccccC---C-Ccccc---c-ccceEE-eccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN---Y-----IPDSQGIPLVSDMSSNFL---S-RKFDV---S-KFGVII-AGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p---~-----i~~~~g~llvvDavSs~G---~-~pIDv---~-~~gvl~-asaqK~lGP 332 (621)
+++++++|.+++-.|.||...+ + +++++|+++|+|-+-.-. . ....+ . +..+++ .|-=|.+|.
T Consensus 165 ~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 244 (404)
T PRK09265 165 ITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRV 244 (404)
T ss_pred ccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccC
Confidence 4567899999999999999988 2 346789999999764211 1 11111 1 122444 555799998
Q ss_pred Cc--cEEEEEc
Q psy8733 333 AG--ITVVIVR 341 (621)
Q Consensus 333 ~G--lg~livr 341 (621)
+| +|+++.+
T Consensus 245 pGlRiG~~v~~ 255 (404)
T PRK09265 245 AGFRVGWMVLS 255 (404)
T ss_pred cccceEEEEEe
Confidence 88 5888863
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-06 Score=93.94 Aligned_cols=130 Identities=13% Similarity=0.136 Sum_probs=87.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Ccc---ccc---ccceEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKF---DVS---KFGVIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pI---Dv~---~~gvl~asaqK~lG 331 (621)
+++++++|++++-.|.||...+. +++++++++|+|-+-.... .+. +++ +..+.+.|--|.+|
T Consensus 167 ~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~ 246 (394)
T PRK05942 167 VAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYN 246 (394)
T ss_pred ccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccC
Confidence 45689999999889999999883 3467899999998743211 111 122 22355677779999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++.+++..... ....+++.....++..+|++..+ .++.+.++.+++.+.+++.
T Consensus 247 ~~GlRiG~i~~~~~l~~~l~~~~~------------~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 312 (394)
T PRK05942 247 MAGWRVGFVVGNRHIIQGLRTLKT------------NLDYGIFSALQKAAETALQLPDS--YLQQVQERYRTRRDFLIQG 312 (394)
T ss_pred ChhhheeeeecCHHHHHHHHHHHh------------hcccCCCHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 888 8999999998876642110 11112333445566666665433 4677788888888888888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|+..
T Consensus 313 L~~~ 316 (394)
T PRK05942 313 LGEL 316 (394)
T ss_pred HHHC
Confidence 8775
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-07 Score=100.26 Aligned_cols=133 Identities=12% Similarity=0.234 Sum_probs=86.6
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+++++++|.+++..|+||...|. +++++++++|+|.+-+-. .....+..+ .+++.|..|.+|.+
T Consensus 163 i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 242 (391)
T PRK08361 163 ITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMT 242 (391)
T ss_pred cccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCc
Confidence 45678999999999999999982 245789999999775422 111222111 27789999999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ---GGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~---gGl~~i~~r~~~la~~L~e 408 (621)
| +|+++.++++++++....+ ....++ +.....++ ..++.+. ..++.+.++.+++.+.+++
T Consensus 243 GlRiG~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~q~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (391)
T PRK08361 243 GWRLGFVIAPEQVIKDMIKLHA-----------YIIGNV-ASFVQIAG---IEALRSKESWKAVEEMRKEYNERRKLVLK 307 (391)
T ss_pred HhhhhhhccCHHHHHHHHHHHh-----------hhccCC-ChHHHHHH---HHHhcCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9 8999999888765432100 011122 22232332 3333321 1367888888888899999
Q ss_pred HHHccCCcc
Q psy8733 409 EIDNSDKFY 417 (621)
Q Consensus 409 ~L~~~~g~~ 417 (621)
.|++++|+.
T Consensus 308 ~L~~~~~~~ 316 (391)
T PRK08361 308 RLKEMPHIK 316 (391)
T ss_pred HHHhCCCCe
Confidence 998876543
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-06 Score=93.35 Aligned_cols=80 Identities=13% Similarity=0.203 Sum_probs=57.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCC---Cc---ccc-cccc--eEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLS---RK---FDV-SKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~---~p---IDv-~~~g--vl~asaqK~lGP~ 333 (621)
+++++++|++++..+.||...|. +++ .+++++|+|.+-.-.. .+ +.. +..+ +++.|-=|.+|.+
T Consensus 142 ~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 221 (352)
T PRK03321 142 ITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLA 221 (352)
T ss_pred hccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhH
Confidence 34678999999999999999985 333 3589999999764221 11 111 1223 5566778999988
Q ss_pred c--cEEEEEchhHHhhhC
Q psy8733 334 G--ITVVIVREDLLEYAL 349 (621)
Q Consensus 334 G--lg~livr~~ll~~~~ 349 (621)
| +|+++.++++.+.+.
T Consensus 222 GlRiG~~v~~~~~~~~~~ 239 (352)
T PRK03321 222 GLRVGYAVGHPEVIAALR 239 (352)
T ss_pred HHhhhhhcCCHHHHHHHH
Confidence 8 899999998887653
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-07 Score=102.07 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=85.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccc-cceEEeccccccCCCc---cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSK-FGVIIAGAQKNIGPAG---ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~-~gvl~asaqK~lGP~G---lg~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+.+.+...-.++. .|+++.|.+|++|.+| .|+++.
T Consensus 141 i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~ 220 (391)
T TIGR01328 141 IKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICG 220 (391)
T ss_pred hccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEc
Confidence 45789999999999999999886 45688999999999987654333332 2489999999997555 578888
Q ss_pred chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++++++++..... .. . .+ ++++-...+. +++-++ -++.+.++..+.+..+.+.|++.+++
T Consensus 221 ~~~li~~l~~~~~-----~~-~-~g---~~l~~~~a~l---~l~~L~---tl~~r~~~~~~na~~la~~L~~~p~v 280 (391)
T TIGR01328 221 KAELLQQIRMVGI-----KD-M-TG---SVISPFDAWL---ILRGLK---TLNIRMKRHSENAMKVAEYLKSHPAV 280 (391)
T ss_pred CHHHHHHHHHHHH-----Hh-C-CC---CCCCcHHHHH---HHhCcC---cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8888776532100 00 0 01 1222222121 122221 24566677788888999999988754
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-06 Score=92.81 Aligned_cols=122 Identities=13% Similarity=0.171 Sum_probs=77.2
Q ss_pred CCceEEEEeccccccccccc---c-----ccccCCCcEEEecccccCCCcc----ccccc--ceEEecccccc-CCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFN---Y-----IPDSQGIPLVSDMSSNFLSRKF----DVSKF--GVIIAGAQKNI-GPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p---~-----i~~~~g~llvvDavSs~G~~pI----Dv~~~--gvl~asaqK~l-GP~Glg 336 (621)
+++++|.++.. +.+|...+ + +++++++++++|-+.+.|.... ...++ ++++.|..|++ |+. .|
T Consensus 135 ~~~~lIiitg~-s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r-~G 212 (346)
T TIGR03576 135 DGTSLVVITGS-TMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPR-GG 212 (346)
T ss_pred cCceEEEEECC-CCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccc-eE
Confidence 45788887654 55677643 2 2356899999999988764221 11222 48888999988 777 49
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+++.++++++.+...... ..+ |.|.+..++..++|+.+ ..+.+.++.+++.+.+++.++
T Consensus 213 ~v~~~~~li~~l~~~~~~-----------~~~-s~~~~~~~aa~~aL~~~----~~~~~~~~l~~r~~~~~~~l~ 271 (346)
T TIGR03576 213 LLAGRKELVDKIKSVGEQ-----------FGL-EAQAPLLAAVVRALEEF----ELSRIRDAFKRKEEVYLRLFD 271 (346)
T ss_pred EEEeCHHHHHHHHHhhcC-----------ccc-CccHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHHH
Confidence 999999998766432111 112 34444666666677543 234556666677666666665
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-06 Score=94.37 Aligned_cols=136 Identities=12% Similarity=0.138 Sum_probs=80.4
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc---ccccccc--eEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK---FDVSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p---IDv~~~g--vl~asaqK~lGP~ 333 (621)
+++++++|++++..|.||...+. +++++++++|+|.+-+... .+ ..+...+ +++.|--|.++.+
T Consensus 163 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~ 242 (398)
T PRK08363 163 ITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFAT 242 (398)
T ss_pred CCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCc
Confidence 45678999999999999998872 3457899999999754221 11 1122222 6678999998766
Q ss_pred c--cEEEEE--chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIV--REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 334 G--lg~liv--r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
| +|++++ ++++++.+......+ . ...+ +++...-.++..+|+...+ -++++.++.+++.+++++.
T Consensus 243 GlRiG~~~~~~~~~~~~~l~~~~~~~------~--~~~~-~~s~~~q~~~~~~l~~~~~--~l~~~~~~~~~~~~~l~~~ 311 (398)
T PRK08363 243 GWRLGYIYFVDPEGKLAEVREAIDKL------A--RIRL-CPNTPAQFAAIAGLTGPMD--YLEEYMKKLKERRDYIYKR 311 (398)
T ss_pred cceEEEEEEeCcHHHHHHHHHHHHHH------h--cccc-cCChHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHH
Confidence 6 788888 555555432211100 0 0011 2333344444444432111 2455566777777888888
Q ss_pred HHccCCc
Q psy8733 410 IDNSDKF 416 (621)
Q Consensus 410 L~~~~g~ 416 (621)
|++++|+
T Consensus 312 L~~~~~~ 318 (398)
T PRK08363 312 LNEIPGI 318 (398)
T ss_pred HhcCCCC
Confidence 8776543
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-07 Score=101.72 Aligned_cols=127 Identities=9% Similarity=-0.002 Sum_probs=83.0
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++..+.+|...|+ +++++|+++++|.+...+ ..|+++ ..|+++.|+||+++ |.+ .|+++
T Consensus 135 i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~-GaDivv~S~tK~l~G~~d~~gG~i~ 213 (388)
T PRK08861 135 LAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLEL-GADFVIHSTTKYINGHSDVIGGVLI 213 (388)
T ss_pred cCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCccc-CCCEEEeecceeccCCCcceeEEEE
Confidence 55689999999999999999996 456789999999998765 455554 24599999999995 776 35555
Q ss_pred Ech-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 340 VRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 340 vr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
.++ ++.+++.. +.. ..-.+++.+..+.+... ..-+.-+.+++.+.+..+-+.|++.|.
T Consensus 214 ~~~~~~~~~~~~-------~~~-----~~G~~~~p~~a~l~~rg------l~Tl~lR~~~~~~~a~~~a~~L~~~p~ 272 (388)
T PRK08861 214 TKTKEHAEELAW-------WGN-----CIGATGTPFDSYMTLRG------IRTLGARMRVHEESAQQILAYLQTQSL 272 (388)
T ss_pred ecHHHHHHHHHH-------HHh-----ccCCCCChHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 544 34443311 000 11122222322211111 113667778888888889999998774
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.4e-07 Score=96.05 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=82.0
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC------Cccc-ccc-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS------RKFD-VSK-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~------~pID-v~~-~g--vl~asaqK~lG 331 (621)
+++++++|++++..+.||...+. +++++++++|+|-+.+... .++. +.. .+ +++.|..|.+|
T Consensus 156 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 235 (387)
T PRK07777 156 VTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFN 235 (387)
T ss_pred cCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhcc
Confidence 34678999999888889998762 3457899999998765321 1222 122 22 78899999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++++++..... +. ....++| ...++..+++.-.+ =++.+.++.+++.+.+++.
T Consensus 236 ~~GlRiG~~~~~~~l~~~~~~~~~-~~--------~~~~~~~---~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~ 301 (387)
T PRK07777 236 VTGWKIGWACGPAPLIAAVRAAKQ-YL--------TYVGGAP---FQPAVAHALDHEDA--WVAALRDSLQAKRDRLAAG 301 (387)
T ss_pred CcCceeEEEecCHHHHHHHHHHHh-hc--------ccCCCCH---HHHHHHHHHhCCcH--HHHHHHHHHHHHHHHHHHH
Confidence 779 6999999888776532110 00 0011222 22333333322111 1456677788888899999
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|++.+
T Consensus 302 L~~~~ 306 (387)
T PRK07777 302 LAEAG 306 (387)
T ss_pred HHhCC
Confidence 98863
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.6e-07 Score=95.82 Aligned_cols=130 Identities=8% Similarity=0.042 Sum_probs=84.5
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCcccc---cc-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKFDV---SK-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pIDv---~~-~g--vl~asaqK~lG 331 (621)
+.+++++|++++-.|.||...+. +++++++++|+|-+..-. ..+..+ +. .+ +.+.|-=|.+|
T Consensus 163 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 242 (385)
T PRK09276 163 VAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYN 242 (385)
T ss_pred ccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcC
Confidence 34678999999888999999983 245789999999987632 122222 22 12 55677779999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++.+++..... ....+++.+...++..+++...+ -++.+.++.+++.+.+.+.
T Consensus 243 ~~GlRiG~~i~~~~l~~~~~~~~~------------~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~ 308 (385)
T PRK09276 243 MTGWRIGFAVGNADLIAGLGKVKS------------NVDSGVFQAIQEAGIAALNGPQE--VVEELRKIYQERRDILVEG 308 (385)
T ss_pred CcchhheeeeCCHHHHHHHHHHHh------------hccCCCCHHHHHHHHHHHcCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 999 9999999998876532110 01112223333444444432111 2566777778888889999
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 309 L~~~ 312 (385)
T PRK09276 309 LRKL 312 (385)
T ss_pred HHhC
Confidence 9886
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.6e-06 Score=91.33 Aligned_cols=263 Identities=14% Similarity=0.168 Sum_probs=160.8
Q ss_pred CCceeccCCCC--CCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhC--CCCCCEEEEEcCCcc
Q psy8733 50 HPVINFGAGPA--KLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLN--VPNNYKILFLQGGGT 125 (621)
Q Consensus 50 ~~~~lf~aGPs--~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~--~p~~yeI~f~~gggT 125 (621)
..++.++-|-- +.|+.+.+++.+.+.+-.. .. -..++ ..++-+.+.+.+.+..| ...+.+|+.+ .|++
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~-~Y----~~~~G--~~~LReaia~~~~~~~~~~~~~~~eiivt-~Ga~ 99 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGT-HY----TPSAG--IPELREAIAEKYKRRYGLDVDPEEEIIVT-AGAK 99 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcccC-CC----CCCCC--CHHHHHHHHHHHHHHhCCCCCCCCeEEEe-CCHH
Confidence 35888888865 7899999999998754211 00 01111 12333344455555555 3333368876 6688
Q ss_pred hhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 126 GMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 126 ~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
+ ++. .++.-++.+||++++..+++.... ...+-.|...+..+.
T Consensus 100 ~-----al~--------------------------~~~~a~~~pGDeVlip~P~Y~~y~--~~~~~~gg~~v~v~l---- 142 (393)
T COG0436 100 E-----ALF--------------------------LAFLALLNPGDEVLIPDPGYPSYE--AAVKLAGGKPVPVPL---- 142 (393)
T ss_pred H-----HHH--------------------------HHHHHhcCCCCEEEEeCCCCcCHH--HHHHhcCCEEEEEeC----
Confidence 8 332 234556678888777777665542 234445554332221
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEeccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNE 283 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnE 283 (621)
.... .+ | .++.+.+ .++++||+|.++.=.
T Consensus 143 -----~~~~-~~-----------------f--------------------------~~d~~~l~~~i~~ktk~i~ln~P~ 173 (393)
T COG0436 143 -----DEEE-NG-----------------F--------------------------KPDLEDLEAAITPKTKAIILNSPN 173 (393)
T ss_pred -----CcCc-cC-----------------C--------------------------cCCHHHHHhhcCccceEEEEeCCC
Confidence 0000 01 1 1222222 367799999999999
Q ss_pred ccccccccc--------ccccCCCcEEEeccccc-------CCCcccccc-cc--eEEeccccccCCCc--cEEEEEc-h
Q psy8733 284 TVDGVEFNY--------IPDSQGIPLVSDMSSNF-------LSRKFDVSK-FG--VIIAGAQKNIGPAG--ITVVIVR-E 342 (621)
Q Consensus 284 T~tGv~~p~--------i~~~~g~llvvDavSs~-------G~~pIDv~~-~g--vl~asaqK~lGP~G--lg~livr-~ 342 (621)
|.||...+. +++++++++|+|-+=.= .+..+.+.. .+ +.+.|-=|.++-+| +|+++.. +
T Consensus 174 NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~ 253 (393)
T COG0436 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPE 253 (393)
T ss_pred CCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChH
Confidence 999999883 35689999999975331 112223333 23 77889999999888 8999998 6
Q ss_pred hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 343 DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 343 ~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
++.+.+.. . .......+|++.-++...||+--.+.+-++.+.+..+++.+.+++.|.+++|+..
T Consensus 254 ~l~~~~~~-----------~-~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~ 317 (393)
T COG0436 254 ELIAALRK-----------L-KSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSV 317 (393)
T ss_pred HHHHHHHH-----------H-HHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Confidence 67665421 0 1123345666677777777764321113677778899999999999999886653
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-06 Score=91.10 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=81.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cccccccc----c--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKFDVSKF----G--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pIDv~~~----g--vl~asaqK~lGP 332 (621)
++++++++.+++..|.||...+. +++++++++|+|.+-+-.. .+..+..+ + +++.|--|.+|.
T Consensus 158 ~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~ 237 (387)
T PRK07683 158 ITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSM 237 (387)
T ss_pred cCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccC
Confidence 44678999999999999998773 3457899999999866432 22223222 2 778899999997
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~-gGl~~i~~r~~~la~~L~e~ 409 (621)
+| +|+++.++++.+++.... ......++.....+ +.+++.+. .-++.+.++.++..+.+++.
T Consensus 238 pGlRiG~i~~~~~l~~~~~~~~------------~~~~~~~~~~~q~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 302 (387)
T PRK07683 238 TGWRIGFLFAPSYLAKHILKVH------------QYNVTCASSISQYA---ALEALTAGKDDAKMMRHQYKKRRDYVYNR 302 (387)
T ss_pred ccceeEEEEcCHHHHHHHHHHH------------HhccCCCChHHHHH---HHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 78 899999998877653210 01112222223233 33344320 01445556666777778888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 303 l~~~ 306 (387)
T PRK07683 303 LISM 306 (387)
T ss_pred HHHc
Confidence 8765
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-06 Score=94.07 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=56.2
Q ss_pred CCCCceEEEEecccccccccccc--------cccc------CCCcEEEecccccCC---Ccc-c-ccccc--eEEecccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDS------QGIPLVSDMSSNFLS---RKF-D-VSKFG--VIIAGAQK 328 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~------~g~llvvDavSs~G~---~pI-D-v~~~g--vl~asaqK 328 (621)
+++++++|++++..|+||..+|. ++++ +++++|+|.+-.-.. .+. . .+.++ +++.|-.|
T Consensus 165 ~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK 244 (394)
T PRK06836 165 ITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSK 244 (394)
T ss_pred cCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchh
Confidence 45689999999999999999884 2344 799999999765221 111 1 22344 78899999
Q ss_pred ccCCCc--cEEEEEchhHH
Q psy8733 329 NIGPAG--ITVVIVREDLL 345 (621)
Q Consensus 329 ~lGP~G--lg~livr~~ll 345 (621)
.+|.+| +|+++.++++.
T Consensus 245 ~~~~pGlRiG~~~~~~~~~ 263 (394)
T PRK06836 245 SLSLPGERIGYIAVNPEME 263 (394)
T ss_pred hccCcceeeEEEecCHHHh
Confidence 999777 89999987763
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-06 Score=92.08 Aligned_cols=127 Identities=11% Similarity=0.003 Sum_probs=80.0
Q ss_pred CCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCCC---cccccc-c-c-eEEeccccccCCCc--c
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLSR---KFDVSK-F-G-VIIAGAQKNIGPAG--I 335 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~~---pIDv~~-~-g-vl~asaqK~lGP~G--l 335 (621)
+++++++++|+-.|+||...+. +.+ .+++++|+|-+-+-... ...+.. . . +++.|-=|.+|.+| +
T Consensus 153 ~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRi 232 (369)
T PRK08153 153 RENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARV 232 (369)
T ss_pred ccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchhe
Confidence 3578899999999999999884 222 34889999987442221 112222 2 2 77888899999889 5
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|.++.++++.+.+.... . ..+++.+..+++.++|+ +..=++.+.++.++..+.+.+.|++.+
T Consensus 233 G~~v~~~~~~~~l~~~~-------------~-~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g 294 (369)
T PRK08153 233 GYAIGAPGTIKAFDKVR-------------N-HFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANG 294 (369)
T ss_pred eeeecCHHHHHHHHHhh-------------c-CCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999988876553211 1 12345555565555553 210145556666666677777777653
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=101.09 Aligned_cols=128 Identities=10% Similarity=-0.007 Sum_probs=84.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccccceEEeccccccCCCc---cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSKFGVIIAGAQKNIGPAG---ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~~gvl~asaqK~lGP~G---lg~li 339 (621)
++++|++|++.+..|+++...|+ +++++|+++|||.+++.+ .+|+++ ..|+++.|++|+++..| .|+++
T Consensus 146 l~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~-GaDivv~S~tKy~~Gh~d~~~G~v~ 224 (395)
T PRK05967 146 MRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDF-GVDISIHAATKYPSGHSDILLGTVS 224 (395)
T ss_pred cCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecChhHc-CCCEEEEecccccCCCCCeeEEEEE
Confidence 56789999999999999999886 456889999999998765 455553 12499999999975433 67777
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.++++++++.. +. . ..-.+++.+..+.+...++ -++-+.+++.+.+..|-+.|++.+.+
T Consensus 225 ~~~~~~~~l~~-------~~--~---~~G~~~~p~da~l~~rgl~------Tl~lR~~~~~~na~~lA~~L~~hp~v 283 (395)
T PRK05967 225 ANEKCWPQLLE-------AH--G---TLGLCAGPDDTYQILRGLR------TMGIRLEHHRKSALEIARWLEGRPDV 283 (395)
T ss_pred cCHHHHHHHHH-------HH--H---HcCCCCCHHHHHHHHcCcc------cHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77777665421 00 0 0112333333222222211 35666777888888888999887743
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-06 Score=94.28 Aligned_cols=128 Identities=17% Similarity=0.271 Sum_probs=80.7
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--Cccc-ccccc--eEEeccccccCCCc--cEEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFD-VSKFG--VIIAGAQKNIGPAG--ITVVI 339 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pID-v~~~g--vl~asaqK~lGP~G--lg~li 339 (621)
.++++|++++..|.||...+. +++.++.++|+|.+..-.. ...+ ++..+ +++.|--|.+|.+| +|+++
T Consensus 147 ~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v 226 (351)
T PRK14807 147 YQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAV 226 (351)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeee
Confidence 378999999999999999885 3445567899999863211 1112 22334 66777889999888 78888
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.++++.+++.... ..+. ++...-+++ ..++.+ +.+++..++.+++.+.+.+.|.+++|+.
T Consensus 227 ~~~~~~~~~~~~~-------------~~~~-~~~~~q~~~---~~~l~~-~~~~~~~~~~~~~r~~l~~~l~~~~g~~ 286 (351)
T PRK14807 227 ANENILKYLNLVK-------------SPYN-INSLSQVIA---LKVLRT-GVLKERVNYILNERERLIKELSKIPGIK 286 (351)
T ss_pred cCHHHHHHHHHcc-------------CCCC-cCHHHHHHH---HHHHhH-HHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 8888877653210 1122 223333333 333333 2355555666677777888887766553
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-07 Score=110.36 Aligned_cols=138 Identities=12% Similarity=0.052 Sum_probs=96.7
Q ss_pred CCCceEEEEecccccccccccc--c---cccCCCcEEEecccccCCCccc-ccccc--eEEeccccccC-CCccEEEEEc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNFLSRKFD-VSKFG--VIIAGAQKNIG-PAGITVVIVR 341 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~G~~pID-v~~~g--vl~asaqK~lG-P~Glg~livr 341 (621)
++++.+|.++++.|..++..|+ | ++++|+++++|+++.++..+++ ..++| +++++.||||| |.|.|..++.
T Consensus 639 ~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG 718 (954)
T PRK12566 639 GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMG 718 (954)
T ss_pred CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccc
Confidence 3688999999999987776665 3 4678999999999999998888 47786 99999999996 9888888888
Q ss_pred h-hHHhhhCCCCCce--eeccccccCCCccC---CchHHHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHHHc
Q psy8733 342 E-DLLEYALPITPTV--FHFKINADNNSVYN---TPPTFVVHVIQRVFAWIKRQGGLAKMEQNS--LQKSVLLYQEIDN 412 (621)
Q Consensus 342 ~-~ll~~~~~~~P~~--ld~~~~~~~~s~~~---TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~--~~la~~L~e~L~~ 412 (621)
. ...+.+.|..|.+ .+... +..+.+ ..++.....+-.|+.|+... |.+..+.+. ..++.++.+.|.+
T Consensus 719 ~iav~~~L~pfLp~~P~~d~~G---~~~r~ga~S~~~~gsa~~l~~A~~Yi~~l-G~eLk~aa~~ailnAnYla~rL~~ 793 (954)
T PRK12566 719 PIGVRAHLAPFVANHPVVPVEG---PDPNNGAVSAAPWGSASILPISWMYIAMM-GPQLADASEVAILSANYLANQLGG 793 (954)
T ss_pred hhhhhhhhhhhccCCCCcCCCC---CCCCCCceeecccchHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHhHh
Confidence 7 5555555544432 11111 111122 22233444467788899888 666333344 6788899999976
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-07 Score=100.91 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=82.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCC-Cc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGP-AG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP-~G--lg~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+.+.+.....+. ..|++++|.+|++|. .+ .|+++.
T Consensus 143 i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~ 222 (388)
T PRK07811 143 ITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVT 222 (388)
T ss_pred cCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEE
Confidence 56689999999999999998886 4567899999999998875433332 234999999999974 44 477777
Q ss_pred ch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 RE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++ ++.+++.. + .. ..-.+++....+ .++.-++ -++.+.++..+.+..+.+.|++.+++
T Consensus 223 ~~~~l~~~~~~----~---~~-----~~g~~~s~~~a~---l~~~~L~---tl~~R~~~~~~na~~la~~L~~~p~v 281 (388)
T PRK07811 223 NDEELDEAFAF----L---QN-----GAGAVPGPFDAY---LTLRGLK---TLAVRMDRHSENAEAVAEFLAGHPEV 281 (388)
T ss_pred CCHHHHHHHHH----H---HH-----hcCCCCCHHHHH---HHHhccC---cHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 64 44443321 0 00 000111111111 1122221 25566667777888999999988754
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-07 Score=101.68 Aligned_cols=273 Identities=15% Similarity=0.150 Sum_probs=140.8
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHH-HHHHHHHHHHHHHhCCC-CCCEEEEEcCCcchhh
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYT-KINNDTQAALRELLNVP-NNYKILFLQGGGTGMF 128 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~-~i~~~ar~~La~Ll~~p-~~yeI~f~~gggT~~~ 128 (621)
...++.|.-..+++.|++++...+.+-...|.. .+..+.+-++. ++-.-+++++++||++. +.+-+-+=+-||+.+
T Consensus 21 ~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~p-g~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~A- 98 (399)
T PF00464_consen 21 STLNLIASENYMSPAVREALGSDLTNKYAEGYP-GKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQA- 98 (399)
T ss_dssp HSEE-CTT-----HHHHHHHTSGGGGS-TTEET-TEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHH-
T ss_pred cCccccCcccccCHHHHHHhCCcceeeccccCC-CcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHH-
Confidence 468899999999999999999988775444422 12233344444 45556889999999996 334455555666662
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH---HHHHHHHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK---KAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~---~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
|+ ++...|++|||++..+..-..|| ......++.+..-..
T Consensus 99 -----n~-------------------------av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~------- 141 (399)
T PF00464_consen 99 -----NL-------------------------AVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLY------- 141 (399)
T ss_dssp -----HH-------------------------HHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHH-------
T ss_pred -----HH-------------------------HHHHHHHhhcCcEEecChhhcccccccccccccccccccce-------
Confidence 22 34555666777766666544333 221110000000000
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
.+.++|. ++ +-...+|-|+ .+++....++++|.+-....+
T Consensus 142 --------------~~~~~y~----~d-~~~~~ID~d~---------------------l~~~a~~~kPklIi~G~S~y~ 181 (399)
T PF00464_consen 142 --------------FESVPYP----VD-PDTGLIDYDE---------------------LEKLAKEHKPKLIICGASSYP 181 (399)
T ss_dssp --------------SEEEEEE----B--TTTSSB-HHH---------------------HHHHHHHH--SEEEEE-SSTS
T ss_pred --------------EEEEeee----ee-cCCCeECHHH---------------------HHHHHhhcCCCEEEECchhcc
Confidence 0000000 00 0000011111 111122236788887765543
Q ss_pred ccccccc-----ccccCCCcEEEecccccC-----CCcccccccceEEecccccc-CCCccEEEEEc-------------
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFL-----SRKFDVSKFGVIIAGAQKNI-GPAGITVVIVR------------- 341 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G-----~~pIDv~~~gvl~asaqK~l-GP~Glg~livr------------- 341 (621)
-..|. |+++.|+++++|+++-.| ..|=+++..|++.+|.||.| ||.| |++..+
T Consensus 182 --~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~ 258 (399)
T PF00464_consen 182 --RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEI 258 (399)
T ss_dssp --S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EE
T ss_pred --CccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCc-eEEEEcCCccccCCccccc
Confidence 22332 566789999999988643 44445555789999999999 8999 777777
Q ss_pred -hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 342 -EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 342 -~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+++.+++.. .--+..-+.|-...|.+++.+|+...+. ......++..+.++.|-+.|.+.| +.+
T Consensus 259 ~~~l~~~I~~-----------avfP~~qg~~h~~~iaalAval~ea~~~-~fk~Ya~qVv~NAk~La~~L~~~G-~~v 323 (399)
T PF00464_consen 259 DEELAEKIDS-----------AVFPGLQGGPHMHRIAALAVALKEALSP-EFKEYAKQVVKNAKALAEALQERG-FKV 323 (399)
T ss_dssp EHHHHHHHHH-----------HHTTTT-SS--HHHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred HHHHHHHhcc-----------ccCCCcccCcchhHHHHHHHHHhcccCH-HHHHHHHHHHHHHHHHHHHHhhCC-cEE
Confidence 344443321 0013344567788999999999987654 347888888899999999998875 543
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-07 Score=100.42 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=56.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc--cEEEEEc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG--ITVVIVR 341 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G--lg~livr 341 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++.+...-.++ ..|+++.|.||++|++| +|.+++.
T Consensus 145 i~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~ 224 (427)
T PRK05994 145 ITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVD 224 (427)
T ss_pred cCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEe
Confidence 56789999999999999999996 4568899999999998765333332 23499999999998555 6777774
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-05 Score=87.59 Aligned_cols=248 Identities=17% Similarity=0.176 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccC
Q psy8733 62 LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMN 141 (621)
Q Consensus 62 ~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~ 141 (621)
+-++-++++.+.+.+-.- .- .....+-++.+++++|++. .+.+ +|||. ||-+....++
T Consensus 13 i~~~e~~~v~~vl~sg~i--------~~-----G~~v~~FE~~~ae~~G~k~---ava~-~sgT~-----AL~laL~al~ 70 (374)
T COG0399 13 IGEEELAAVQEVLKSGWL--------TG-----GPFVRRFEQAFAEYLGVKY---AVAV-SSGTA-----ALHLALLALA 70 (374)
T ss_pred cchHHHHHHHHHHHcCCe--------ec-----ChHHHHHHHHHHHHhCCCe---EEEe-cChHH-----HHHHHHHhcC
Confidence 567778888888754221 10 1344556678999999986 3444 67898 4444444556
Q ss_pred CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCcc
Q psy8733 142 VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221 (621)
Q Consensus 142 ~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (621)
+.+||+|+++-- -|-+... ..-..|+..+..+.+ ..+
T Consensus 71 ig~GDeVI~ps~----TfvATan-----------------------~i~~~Ga~PVFvDid--------~~T-------- 107 (374)
T COG0399 71 IGPGDEVIVPSF----TFVATAN-----------------------AVLLVGAKPVFVDID--------PDT-------- 107 (374)
T ss_pred CCCCCEEEecCC----chHHHHH-----------------------HHHHcCCeEEEEecC--------Ccc--------
Confidence 999999998853 3322211 122345544433321 000
Q ss_pred ccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc-----cccc
Q psy8733 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDS 296 (621)
Q Consensus 222 ~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~ 296 (621)
|- +|++.+ +.++.++||+|..+| ..|...|. ++++
T Consensus 108 -------------~n--id~~~i----------------------e~aIt~~tKAIipVh---l~G~~~dm~~i~~la~~ 147 (374)
T COG0399 108 -------------LN--IDPDLI----------------------EAAITPRTKAIIPVH---LAGQPCDMDAIMALAKR 147 (374)
T ss_pred -------------cC--CCHHHH----------------------HHHcccCCeEEEEeh---hccCCCCHHHHHHHHHH
Confidence 00 222221 124778899999998 45777764 6789
Q ss_pred CCCcEEEecccccCCCccc--ccccc---eEEeccccccC-CCccEEEEEchhHHhhhCCCC-----Cceeeccc-cccC
Q psy8733 297 QGIPLVSDMSSNFLSRKFD--VSKFG---VIIAGAQKNIG-PAGITVVIVREDLLEYALPIT-----PTVFHFKI-NADN 364 (621)
Q Consensus 297 ~g~llvvDavSs~G~~pID--v~~~g---vl~asaqK~lG-P~Glg~livr~~ll~~~~~~~-----P~~ld~~~-~~~~ 364 (621)
+|+++|-||+|++|+.-=. +-.+| ...+-+.|+++ -.|=.++.=++++.++++... +.. +++. +..-
T Consensus 148 ~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~-~~~y~~~~~ 226 (374)
T COG0399 148 HGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDA-VFKYLHEEL 226 (374)
T ss_pred cCCeEEEEcchhccCeecCcccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCc-cccceeeec
Confidence 9999999999999985432 12233 77888899996 456444444556666654310 100 0000 1111
Q ss_pred CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccC
Q psy8733 365 NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ 422 (621)
Q Consensus 365 ~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~ 422 (621)
+..+.-.++.+..+ +..|. -++.+.++-++.++...+.|++++++.....+
T Consensus 227 G~N~rm~~iqAAig----l~QL~---~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~ 277 (374)
T COG0399 227 GYNYRLTEIQAAIG----LAQLE---RLDEINERRREIAQIYAEALKGLPGITLPPEP 277 (374)
T ss_pred ccccCHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHhhcCCCccccCCC
Confidence 22222233333222 22232 36778888888888888999988764444333
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-06 Score=93.80 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=50.4
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccccccc--c--eE-EeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVSKF--G--VI-IAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~~~--g--vl-~asaqK~lGP 332 (621)
+++++++|.+++-.|.||...+. +++++++++|+|-+-.-.. ....+..+ + ++ +.|--|.+|.
T Consensus 278 ~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~ 357 (517)
T PRK13355 278 ITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMI 357 (517)
T ss_pred cCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccC
Confidence 46789999999999999999883 3457899999999743211 11222222 2 33 4666899998
Q ss_pred Cc--cEEEEEc
Q psy8733 333 AG--ITVVIVR 341 (621)
Q Consensus 333 ~G--lg~livr 341 (621)
+| +|++++.
T Consensus 358 ~G~RiG~~i~~ 368 (517)
T PRK13355 358 AGYRIGWMILS 368 (517)
T ss_pred cccceEEEEee
Confidence 88 7888865
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-06 Score=94.04 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=50.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc---ccccc-eEEeccc--cccCCC-ccEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD---VSKFG-VIIAGAQ--KNIGPA-GITV 337 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID---v~~~g-vl~asaq--K~lGP~-Glg~ 337 (621)
+++++++|.++|. +|...++ +++++|+++|.|+++++|+. .+ +..++ +-++|.| |.+++. |-++
T Consensus 116 i~~~tk~i~~~~~---~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~-~~~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~ 191 (375)
T PRK11706 116 ITPKTRAIVPVHY---AGVACEMDTIMALAKKHNLFVVEDAAQGVMST-YKGRALGTIGHIGCFSFHETKNYTAGEGGAL 191 (375)
T ss_pred cCCCCeEEEEeCC---CCCccCHHHHHHHHHHcCCEEEEECccccccc-cCCeeeecCcCEEEEeCCCCccccccCCeEE
Confidence 4567899998873 7887774 45689999999999999973 22 22333 5566766 999753 3333
Q ss_pred EEEchhHHhhh
Q psy8733 338 VIVREDLLEYA 348 (621)
Q Consensus 338 livr~~ll~~~ 348 (621)
+.-++++.+++
T Consensus 192 ~~~~~~~~~~~ 202 (375)
T PRK11706 192 LINDPALIERA 202 (375)
T ss_pred EECCHHHHHHH
Confidence 33345666554
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-06 Score=92.92 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=82.7
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEeccccc---CCCc-ccc---cccc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF---LSRK-FDV---SKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~---G~~p-IDv---~~~g--vl~asaqK~lGP 332 (621)
++++++++.+++-.|.||...+. +++++|+++|+|-+-.- ...+ +.+ +..+ +.+.|-=|.++.
T Consensus 187 ~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 266 (430)
T PLN00145 187 ADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVV 266 (430)
T ss_pred hCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCC
Confidence 45678999999999999999983 34678999999987542 2222 222 2222 778888899988
Q ss_pred Cc--cEEEEEc--hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVR--EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 333 ~G--lg~livr--~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
|| +|+++.. +++++...- .- .+... ......++.+.-+++..+|+.-.+. -++.+.++.++..+.+++
T Consensus 267 pG~RlG~iv~~~~~~~~~~~~~-~~---~~~~~---~~~~~~~~~~~Q~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 338 (430)
T PLN00145 267 PGWRLGWIATCDPNGILKETKV-VD---SIRNY---LNISTDPATFVQGAIPQIIANTKEE-FFTKTLGLLKETADICYE 338 (430)
T ss_pred CCeeEEEEEEecchhhhhhhHH-HH---HHHHH---hcccCCCCHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHH
Confidence 88 7888763 333321100 00 00000 1111223444445544444321111 256677777888888899
Q ss_pred HHHccCCc
Q psy8733 409 EIDNSDKF 416 (621)
Q Consensus 409 ~L~~~~g~ 416 (621)
.|+.++|+
T Consensus 339 ~L~~~~g~ 346 (430)
T PLN00145 339 KIKEIKCI 346 (430)
T ss_pred HHhcCCCC
Confidence 88877544
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.1e-07 Score=100.17 Aligned_cols=131 Identities=14% Similarity=0.126 Sum_probs=86.2
Q ss_pred CCceEEEEeccccccc-ccccc--------ccccCCCcEEEecccccC-----------CCccccc-------c-cceEE
Q psy8733 272 PEASYLYYCDNETVDG-VEFNY--------IPDSQGIPLVSDMSSNFL-----------SRKFDVS-------K-FGVII 323 (621)
Q Consensus 272 ~~t~~V~~thnET~tG-v~~p~--------i~~~~g~llvvDavSs~G-----------~~pIDv~-------~-~gvl~ 323 (621)
+++++|.+++-.|.+| ...+. +++++|+++|.|+++..+ ....++. . .|+++
T Consensus 176 ~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~ 255 (460)
T PRK13238 176 ENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLT 255 (460)
T ss_pred CceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEE
Confidence 4699999998888887 55542 456899999999988652 2344432 2 24888
Q ss_pred ecccccc-CCCccEEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy8733 324 AGAQKNI-GPAGITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 401 (621)
Q Consensus 324 asaqK~l-GP~Glg~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~ 401 (621)
+|++|.+ +|.| |+++.+ +++.+++......+ ....+++.++.....|+..+|+...+..-++.+ .+
T Consensus 256 ~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~-------~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~----~~ 323 (460)
T PRK13238 256 MSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILY-------EGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYR----IG 323 (460)
T ss_pred EecccCCCCcce-eEEEcChHHHHHHhhhccccc-------CCcccccCcHHHHHHHHHhhHHHhhChHHHHHH----HH
Confidence 8999987 6888 899988 57777664422110 112356777777778888777654433112222 22
Q ss_pred HHHHHHHHHHccC
Q psy8733 402 KSVLLYQEIDNSD 414 (621)
Q Consensus 402 la~~L~e~L~~~~ 414 (621)
..++|.+.|++.|
T Consensus 324 ~~~~l~~~L~~~G 336 (460)
T PRK13238 324 QVEYLGEGLEEAG 336 (460)
T ss_pred HHHHHHHHHHHCC
Confidence 3578888888764
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-06 Score=88.94 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=36.5
Q ss_pred HHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 559 ELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 559 ~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
..|.+.++++||....|- .+|++.+..+|.|+.+++++.|+.|..
T Consensus 288 ~~~~~~l~~~gi~v~~~~----~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 288 AALGEYMRERNVLINASP----IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred HHHHHHHHHcCeeecCCc----eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 356677888899886552 489999888999999999999998754
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-05 Score=87.79 Aligned_cols=130 Identities=12% Similarity=-0.028 Sum_probs=80.5
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccc---ccc-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFD---VSK-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pID---v~~-~g--vl~asaqK~lG 331 (621)
+.+++++|++|+-.|+||...+. +++.+++++|+|-+-+-.. .+.. ++. .+ +++.|--|.+|
T Consensus 163 ~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 242 (399)
T PRK07681 163 IADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYS 242 (399)
T ss_pred ccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccC
Confidence 34578999999768899999883 3457899999999876321 1122 222 23 66778899999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++.+++.... .....+++...-.++..+|+.-.+ -++...++.+++.+.+.+.
T Consensus 243 ~~GlRiG~~i~~~~l~~~~~~~~------------~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~ 308 (399)
T PRK07681 243 LAGSRIGYMIGNEEIVRALTQFK------------SNTDYGVFLPIQKAACAALRNGAA--FCEKNRGIYQERRDTLVDG 308 (399)
T ss_pred CccceeEEEecCHHHHHHHHHHH------------hhcccCCCHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 999 899999988877653210 011122333333333333321111 1445555666777778888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 309 L~~~ 312 (399)
T PRK07681 309 FRTF 312 (399)
T ss_pred HHHC
Confidence 8775
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.8e-06 Score=87.42 Aligned_cols=125 Identities=17% Similarity=0.222 Sum_probs=83.3
Q ss_pred CCCCceEEEEecccccccccc-c---c-----ccccCCCcEEEecccc-cCCC--cc--ccccc--ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEF-N---Y-----IPDSQGIPLVSDMSSN-FLSR--KF--DVSKF--GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~-p---~-----i~~~~g~llvvDavSs-~G~~--pI--Dv~~~--gvl~asaqK~lGP~ 333 (621)
+++++++|.+.++.+.+|+.. + + +++++++++|+|.+++ ++.. ++ +.... +++.+ -|.+| +
T Consensus 167 ~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~--sK~~~-~ 243 (379)
T TIGR00707 167 IDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITL--AKGLG-G 243 (379)
T ss_pred hhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEE--ccccc-C
Confidence 445789999999888888753 2 1 3567899999999987 5431 12 11111 25544 59998 4
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++.++++.+.+.+.. ....+ +.|.....++.++|+.+.+. .+.++.+++.+++++.|.
T Consensus 244 G~riG~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~aa~aaL~~~~~~----~~~~~~~~~~~~~~~~l~ 307 (379)
T TIGR00707 244 GVPIGATLAKEEVAEAFTPGD-----------HGSTF-GGNPLACAAALAVLEVIEKE----RLLENVKEKGDYFKERLE 307 (379)
T ss_pred CcccEEEEEcHHHHhhhcCCC-----------CCCCC-CCCHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHH
Confidence 4 899999988876653210 11222 34667788888899887542 456777778888888887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 308 ~~ 309 (379)
T TIGR00707 308 EL 309 (379)
T ss_pred HH
Confidence 65
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.3e-07 Score=98.36 Aligned_cols=128 Identities=12% Similarity=0.142 Sum_probs=85.3
Q ss_pred CCC-CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccCCCc---cEEE
Q psy8733 270 RDP-EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPAG---ITVV 338 (621)
Q Consensus 270 i~~-~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~G---lg~l 338 (621)
+++ ++++|++++..|.+|...|+ +++++|+++|+|.+.+.+. ++..++ ++++.|..|++|..| .|++
T Consensus 159 i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~--~~~~~~g~divv~S~SK~l~g~g~~~gG~i 236 (418)
T PLN02242 159 VVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMV--LSPARLGADVVVHSISKFISGGADIIAGAV 236 (418)
T ss_pred cCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccC--CCHHHcCCcEEEEeCccccCCCCCceEEEE
Confidence 455 49999999999999999886 4568899999999886543 343444 489999999998666 4888
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.++++++++...... .....+ .++....+.+...++ -++.+.+++.+.+.++.+.|++.+
T Consensus 237 v~~~~li~~l~~~~~~---------~~~~~g~~~~~~~A~l~~~~l~------tl~~r~~~~~~~a~~la~~L~~~~ 298 (418)
T PLN02242 237 CGPAELVNSMMDLHHG---------ALMLLGPTMNPKVAFELSERLP------HLSLRMKEHCRRAMEYAKRMKELG 298 (418)
T ss_pred EcCHHHHHHHHHHhhh---------hhhccCCCCCHHHHHHHHcCCC------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888887765321100 001112 222222222111122 356666788889999999999874
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.6e-07 Score=96.25 Aligned_cols=128 Identities=8% Similarity=0.007 Sum_probs=81.6
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccC-CCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIG-PAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lG-P~G--lg~liv 340 (621)
+++++++|++++-.+.+|...|+ +++++|+++++|.+++.+...-+++ ..|+++.|.+|+++ ++| .|+++.
T Consensus 133 i~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~ 212 (382)
T TIGR02080 133 LAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIA 212 (382)
T ss_pred cCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEe
Confidence 45679999999999999999985 4567899999999987665332222 23599999999995 777 676666
Q ss_pred c-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 341 R-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 341 r-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+ +++.+++.. +.. ..-.+.+.+..+.+ ++-++ -+..+.+++.+.+..+.+.|++.+.
T Consensus 213 ~~~~~~~~l~~-------~~~-----~~g~~~sp~~a~l~---lr~l~---tl~~R~~~~~~na~~~a~~L~~~p~ 270 (382)
T TIGR02080 213 KDPQVAEELAW-------WAN-----NLGVTGGAFDSYLT---LRGLR---TLVARMRLQQRNAQAIVEYLQTQPL 270 (382)
T ss_pred CCHHHHHHHHH-------HHH-----ccCCCCCHHHHHHH---Hcccc---hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4 555554421 110 00112222222222 22221 2455566777788888888988763
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-05 Score=89.22 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=79.3
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCcc--------ccccc-----c-eEEecc
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKF--------DVSKF-----G-VIIAGA 326 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pI--------Dv~~~-----g-vl~asa 326 (621)
++++|++++-.|+||...+. +++++++++|+|-+=.-. ..+. +++.- . +++.|-
T Consensus 218 ~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~ 297 (481)
T PTZ00377 218 TPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHST 297 (481)
T ss_pred CeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecC
Confidence 68999999888999999983 345789999999765421 1111 12211 2 566788
Q ss_pred cccc-CCCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH----------HHhhC
Q psy8733 327 QKNI-GPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW----------IKRQG 390 (621)
Q Consensus 327 qK~l-GP~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~----------i~~~g 390 (621)
=|.+ |.+| +|.+++ .+++.+++... . +....++...-+++..+|+. ..++
T Consensus 298 SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~----------~---~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~- 363 (481)
T PTZ00377 298 SKGIIGECGRRGGYFELTNIPPEVREQIYKL----------A---SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRE- 363 (481)
T ss_pred CcccccCCcCceEEEEEeCCCHHHHHHHHHH----------h---heecCCChHHHHHHHHHhCCCCCCcccHHHHHHH-
Confidence 9975 7788 577776 67777655320 0 11123455556666666632 1111
Q ss_pred CHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 391 GLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 391 Gl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+..+.++.+++.+.+.+.|++++|+
T Consensus 364 -~~~~~~~~~~rr~~l~~~L~~~~g~ 388 (481)
T PTZ00377 364 -RDAIFTSLKRRAELLTDELNKIEGV 388 (481)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444445677778888888877544
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-06 Score=92.06 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=57.3
Q ss_pred CCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCCCc---cc-ccccc--eEEeccccccCCCcc--E
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLSRK---FD-VSKFG--VIIAGAQKNIGPAGI--T 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~~p---ID-v~~~g--vl~asaqK~lGP~Gl--g 336 (621)
+++++|++|+-.|.||...+. +.+ ..++++|+|-+-.-.... ++ +.+++ +++.|--|++|.+|+ |
T Consensus 144 ~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiG 223 (351)
T PRK01688 144 DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCG 223 (351)
T ss_pred cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHHh
Confidence 478999999999999999984 222 226789999985322211 11 12333 788888999999995 9
Q ss_pred EEEEchhHHhhhCC
Q psy8733 337 VVIVREDLLEYALP 350 (621)
Q Consensus 337 ~livr~~ll~~~~~ 350 (621)
+++.++++++.+..
T Consensus 224 y~i~~~~~i~~l~~ 237 (351)
T PRK01688 224 FTLANEEVINLLLK 237 (351)
T ss_pred HHhCCHHHHHHHHh
Confidence 99999999876643
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-05 Score=86.52 Aligned_cols=132 Identities=8% Similarity=0.081 Sum_probs=81.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccC-CCcEEEecccccC---CCcc----cc-ccc-c--eEEeccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQ-GIPLVSDMSSNFL---SRKF----DV-SKF-G--VIIAGAQKN 329 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~-g~llvvDavSs~G---~~pI----Dv-~~~-g--vl~asaqK~ 329 (621)
+.+++++|.+++-.|.||...+. +++++ ++++|+|-+-+-. ..+. .+ .++ + +++.|-.|.
T Consensus 163 ~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 242 (402)
T PRK06107 163 ITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKT 242 (402)
T ss_pred cCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchh
Confidence 34678899999888999999873 23566 8999999754311 1111 11 122 2 556666999
Q ss_pred cCCCcc--EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8733 330 IGPAGI--TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY 407 (621)
Q Consensus 330 lGP~Gl--g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~ 407 (621)
+|.+|+ |+++.++++.+++.. +. .....+++....+++..+|+--.+ -++...++.+++.+.++
T Consensus 243 ~~~pGlRiG~~~~~~~~~~~~~~-------~~-----~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 308 (402)
T PRK06107 243 YAMTGWRIGYAAGPADLIAAINK-------LQ-----SQSSSCPSSISQAAAAAALNGDQS--FVTESVAVYKQRRDYAL 308 (402)
T ss_pred hcCcccceeeeecCHHHHHHHHH-------HH-----HhcccCCChHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHH
Confidence 998995 999999888776532 10 011234445555555544431011 14555666777788888
Q ss_pred HHHHccCC
Q psy8733 408 QEIDNSDK 415 (621)
Q Consensus 408 e~L~~~~g 415 (621)
+.|++++|
T Consensus 309 ~~L~~~~g 316 (402)
T PRK06107 309 ALLNAIPG 316 (402)
T ss_pred HHHhcCCC
Confidence 88877654
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.4e-07 Score=96.83 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=83.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccC--CCcEEEecccccCCCccccc-ccceEEeccccccCCCc---cEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQ--GIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG---ITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~--g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G---lg~l 338 (621)
+++++++|++++-.+.+|...|+ +++++ ++++++|.+.+.+.....++ ..|+++.|.+|+++.+| .|++
T Consensus 146 i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v 225 (400)
T PRK06234 146 LKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFV 225 (400)
T ss_pred hccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEE
Confidence 56789999999999999999986 34554 89999999987765332222 23499999999998666 5899
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.++++++++.... .... .+ .+.+.+..+.+...|+ -++.+.++..+.+..+.+.|++.+
T Consensus 226 ~~~~~~~~~l~~~~-----~~~~--~g---~~l~p~~a~l~~~~l~------tl~~r~~~~~~na~~~a~~L~~~~ 285 (400)
T PRK06234 226 VGKEEFINQVKLFG-----IKDM--TG---SVIGPFEAFLIIRGMK------TLQIRMEKHCKNAMKVAKFLESHP 285 (400)
T ss_pred EecHHHHHHHHHHH-----HHHh--cC---CCCCHHHHHHHHhccC------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99998877653110 0000 01 1222222222222222 245566667778888888888766
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=93.47 Aligned_cols=127 Identities=17% Similarity=0.066 Sum_probs=87.7
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCcccc----cccc--eEEeccccccCCCcc--E
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKFDV----SKFG--VIIAGAQKNIGPAGI--T 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pIDv----~~~g--vl~asaqK~lGP~Gl--g 336 (621)
++++|.+++..|.||...+. +++++|+++|+|.+..-....-++ +..+ +++.|..|++|++|+ |
T Consensus 125 ~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G 204 (330)
T TIGR01140 125 ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLG 204 (330)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhh
Confidence 57789999999999999983 235789999999987533322122 1223 889999999998885 9
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++.++++++++....+ ..+++.+. ..++.+++.+.+-.+.+.++.+++.+.+++.|++++++
T Consensus 205 ~i~~~~~~~~~l~~~~~--------------~~~~s~~~---q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 267 (330)
T TIGR01140 205 FVVAHPALLARLREALG--------------PWTVNGPA---RAAGRAALADTAWQAATRARLAAERARLAALLARLGGL 267 (330)
T ss_pred heeCCHHHHHHHHhcCC--------------CCCchHHH---HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999998877643211 12333333 34445555543124677888888999999999987643
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.3e-07 Score=97.28 Aligned_cols=128 Identities=11% Similarity=0.089 Sum_probs=80.4
Q ss_pred CCC-CceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc-c-EEE
Q psy8733 270 RDP-EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG-I-TVV 338 (621)
Q Consensus 270 i~~-~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G-l-g~l 338 (621)
+++ ++++|++.+..+.+|...|+ +++++|+++|+|.+++.+. .|++. ..|+++.|.+|++| |.. + |.+
T Consensus 133 i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~-GaDivv~S~sK~l~g~~d~~gG~v 211 (385)
T PRK08574 133 IKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRH-GADFVVHSLTKYIAGHNDVVGGVA 211 (385)
T ss_pred cCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChhhh-CCcEEEeeCceeecCCCCceeEEE
Confidence 445 79999999999999999986 4568899999999988764 34432 12599999999996 544 2 545
Q ss_pred EE-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 339 IV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 339 iv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+. ++++++++.. +... .+ .+++.+..+.+...++ -++.+.+++.+.+..+.+.|++.+.+
T Consensus 212 i~~~~~~~~~~~~-------~~~~--~g---~~~~p~~a~l~l~~l~------tL~~R~~~~~~na~~la~~L~~~p~v 272 (385)
T PRK08574 212 VAWSGEFLEELWE-------WRRR--LG---TIMQPFEAYLVLRGLK------TLEVRFERQCRNAMAIAEFLSEHPKV 272 (385)
T ss_pred EECcHHHHHHHHH-------HHHh--cC---CCCCHHHHHHHHcccC------cHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 55 4555554421 1110 00 1222222222222222 24556677777888888999887743
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.2e-06 Score=88.71 Aligned_cols=125 Identities=10% Similarity=0.084 Sum_probs=78.6
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC---c--ccc-ccc-c-eEEeccccccCCCc--cE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR---K--FDV-SKF-G-VIIAGAQKNIGPAG--IT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~---p--IDv-~~~-g-vl~asaqK~lGP~G--lg 336 (621)
+++++|.+|.-.+.||...+. +.+..++++|+|-+.+.... + +.. +.. + +++.|--|.+|.+| +|
T Consensus 159 ~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG 238 (368)
T PRK03317 159 HRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLG 238 (368)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhh
Confidence 467888899888999999984 34445799999998764321 1 111 112 2 66778999999778 59
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+++.++++.+.+.... ..+ +.+....+++.++|+.... +.+..++.+++.+.+.+.|...
T Consensus 239 ~~~~~~~~~~~l~~~~-------------~~~-~~s~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~~ 298 (368)
T PRK03317 239 YLAAAPAVVDALRLVR-------------LPY-HLSAVTQAAARAALRHADE---LLASVAALRAERDRVVAWLREL 298 (368)
T ss_pred hhhCCHHHHHHHHhcC-------------CCC-CCCHHHHHHHHHHhhCHHH---HHHHHHHHHHHHHHHHHHHHHC
Confidence 9999998887653211 112 2334455555556654322 3333344555666677777664
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.9e-07 Score=97.45 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=56.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~G--lg~liv 340 (621)
+++++++|++++..|.+|...|+ +++++|+++|+|++++.+. .++..++| +++.|.+|++|..| +|.+++
T Consensus 128 l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~-~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~ 206 (397)
T PRK05939 128 IRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW-LFRPKDVGASLVINSLSKYIAGHGNALGGAVT 206 (397)
T ss_pred CCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc-ccCccccCCEEEEecCeecccCCCCeEEEEEe
Confidence 56789999999999999999886 4568999999999987764 45555555 99999999997555 455555
Q ss_pred c
Q psy8733 341 R 341 (621)
Q Consensus 341 r 341 (621)
.
T Consensus 207 ~ 207 (397)
T PRK05939 207 D 207 (397)
T ss_pred c
Confidence 3
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-05 Score=85.51 Aligned_cols=132 Identities=15% Similarity=0.163 Sum_probs=80.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEeccccc---CCCc-cccccc---c--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF---LSRK-FDVSKF---G--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~---G~~p-IDv~~~---g--vl~asaqK~lGP 332 (621)
++++++++.+|+-.|.||...+. +++++|+++|+|-+=.- +..+ ..+..+ . +++.|-=|.++.
T Consensus 201 ~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~ 280 (462)
T PLN02187 201 ADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVV 280 (462)
T ss_pred cCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCC
Confidence 45678999999999999999873 34578999999997542 2212 123222 2 666788999998
Q ss_pred Cc--cEEEEEc-hh-H---HhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVR-ED-L---LEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAW-IKRQGGLAKMEQNSLQKS 403 (621)
Q Consensus 333 ~G--lg~livr-~~-l---l~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~-i~~~gGl~~i~~r~~~la 403 (621)
+| +|+++.. ++ . ++.+.. . ....... .|+.+...++..+|+- -.+ =++++.+..++..
T Consensus 281 pGlRiG~~v~~~p~~~~~~~~~~~~-------~----~~~~~~~~~~s~~~Q~a~~~~L~~~~~~--~l~~~~~~l~~~r 347 (462)
T PLN02187 281 PGWKIGWIALNDPEGVFETTKVLQS-------I----KQNLDVTPDPATIIQAALPAILEKADKN--FFAKKNKILKHNV 347 (462)
T ss_pred ccceeEEEEecCchhHHHHHHHHHH-------H----HHhccccCCCCHHHHHHHHHHHhcCcHH--HHHHHHHHHHHHH
Confidence 88 7888873 22 2 122211 0 0011111 2355555565555542 111 1556666777777
Q ss_pred HHHHHHHHccC
Q psy8733 404 VLLYQEIDNSD 414 (621)
Q Consensus 404 ~~L~e~L~~~~ 414 (621)
+.+++.|++++
T Consensus 348 ~~l~~~L~~~~ 358 (462)
T PLN02187 348 DLVCDRLKDIP 358 (462)
T ss_pred HHHHHHHhhCC
Confidence 88889888765
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-05 Score=87.15 Aligned_cols=127 Identities=12% Similarity=0.138 Sum_probs=76.2
Q ss_pred CCCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCC------Cccc-ccccc--eEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLS------RKFD-VSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~------~pID-v~~~g--vl~asaqK~lGP~ 333 (621)
+++++++|++|+-.|.||...+. +.+ ..+.++|+|-+-.-.. ..+. ++..+ +++.|-=|.+|.+
T Consensus 148 ~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~ 227 (366)
T PRK01533 148 VDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENTLIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLA 227 (366)
T ss_pred hCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCCEEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcCh
Confidence 45678999999999999999984 222 1234677787542111 1111 22333 7788889999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++..+++++++... . ....+|.+...++..+|+ +..=++.+.+..++..+++.+.++
T Consensus 228 GlRiG~~i~~~~~~~~l~~~-------------~-~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~ 290 (366)
T PRK01533 228 SFRVGYAVGHEELIEKLNVV-------------R-LPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCK 290 (366)
T ss_pred HHHHhHHhCCHHHHHHHHHh-------------c-CCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 68888888887765321 0 123455556566555553 110134444555555556666666
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
.+
T Consensus 291 ~~ 292 (366)
T PRK01533 291 EN 292 (366)
T ss_pred hC
Confidence 55
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-05 Score=86.24 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=75.5
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc-c---ccccc-c-eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK-F---DVSKF-G-VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p-I---Dv~~~-g-vl~asaqK~lGP 332 (621)
+.+++++|.+|+-.|.||...+. +++++++++|+|-+-.-.. .+ . .++.- . +++.|-=|.+|.
T Consensus 174 ~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~ 253 (412)
T PTZ00433 174 VDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVV 253 (412)
T ss_pred hccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCC
Confidence 34578999999999999998763 3457899999999764321 11 1 22221 2 667888999987
Q ss_pred Cc--cEEEEEc------hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVR------EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW-IKRQGGLAKMEQNSLQKS 403 (621)
Q Consensus 333 ~G--lg~livr------~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~-i~~~gGl~~i~~r~~~la 403 (621)
+| +|++++. +++++.+.. . ....++ ++.....++..+++. ..+ =++++.++.++..
T Consensus 254 pGlRlG~~i~~~p~~~~~~~~~~~~~-----------~-~~~~~~-~~~~~q~a~~~~l~~~~~~--~~~~~~~~~~~~r 318 (412)
T PTZ00433 254 PGWRLGWLLLVDPHGNGGDFLDGMKR-----------L-GMLVCG-PCSVVQAALGEALLNTPQE--HLEQIVAKLEEGA 318 (412)
T ss_pred CCeeEEEEEEeCCcccHHHHHHHHHH-----------H-hhccCC-CChHHHHHHHHHHhcCcHH--HHHHHHHHHHHHH
Confidence 77 6777762 334433211 0 011122 233333333333321 011 1555666677777
Q ss_pred HHHHHHHHccC
Q psy8733 404 VLLYQEIDNSD 414 (621)
Q Consensus 404 ~~L~e~L~~~~ 414 (621)
+.+++.|++..
T Consensus 319 ~~l~~~L~~~~ 329 (412)
T PTZ00433 319 MVLYNHIGECI 329 (412)
T ss_pred HHHHHHHhcCC
Confidence 77888887653
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.1e-06 Score=90.73 Aligned_cols=131 Identities=13% Similarity=0.109 Sum_probs=83.4
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---C---Ccc-ccccc-c--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---S---RKF-DVSKF-G--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~---~pI-Dv~~~-g--vl~asaqK~lG 331 (621)
+++++++|.+++..|+||...+. +++++++++|+|-+..-. . .++ .+..+ + +++.|-.|.+|
T Consensus 156 ~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 235 (387)
T PRK08912 156 FSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFS 235 (387)
T ss_pred hCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhcc
Confidence 44678999999999999999873 345789999999875321 1 111 22222 2 78899999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++.+.+.... ....+++++.. ..++..++....+ =++.+.++.+++.+.+++.
T Consensus 236 ~~GlRiG~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~-q~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~ 301 (387)
T PRK08912 236 LTGWKVGFVCAAPPLLRVLAKAH-----------QFLTFTTPPNL-QAAVAYGLGKPDD--YFEGMRADLARSRDRLAAG 301 (387)
T ss_pred CcCceeEEEecCHHHHHHHHHHH-----------hhccccCChHH-HHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 999 899999999877653210 01112333322 2222233321111 1456667777888889999
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|.+.+
T Consensus 302 L~~~g 306 (387)
T PRK08912 302 LRRIG 306 (387)
T ss_pred HHhCC
Confidence 98873
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-05 Score=87.35 Aligned_cols=131 Identities=14% Similarity=0.154 Sum_probs=80.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---CCc-ccc---cccc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---SRK-FDV---SKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~~p-IDv---~~~g--vl~asaqK~lGP 332 (621)
+++++++|.+++-.|.||...+. +++++++++|+|.+-.-. ..+ ..+ +..+ +.+.|-=|.++.
T Consensus 166 ~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 245 (409)
T PLN02656 166 ADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIV 245 (409)
T ss_pred hccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccC
Confidence 45678999999999999998763 345789999999986522 111 222 2223 677888999987
Q ss_pred Cc--cEEEEEc--------hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVR--------EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQK 402 (621)
Q Consensus 333 ~G--lg~livr--------~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~l 402 (621)
+| +|+++.. +++++++.. .. .....++....+++..+|+.-.+. -++...++.+++
T Consensus 246 pGlRiG~~i~~~~~~~~~~~~~~~~~~~----------~~---~~~~~~s~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~ 311 (409)
T PLN02656 246 PGWRLGWFVTTDPSGSFRDPKIVERIKK----------YF---DILGGPATFIQAAVPTILEQTDES-FFKKTINILKQS 311 (409)
T ss_pred cceeEEEEEEeCcccccccHHHHHHHHH----------HH---hhhcCCCHHHHHHHHHHHhcCcHH-HHHHHHHHHHHH
Confidence 77 7888873 345544321 00 112234445555555555421011 255666677777
Q ss_pred HHHHHHHHHccC
Q psy8733 403 SVLLYQEIDNSD 414 (621)
Q Consensus 403 a~~L~e~L~~~~ 414 (621)
.+.+++.|+.++
T Consensus 312 r~~~~~~L~~~~ 323 (409)
T PLN02656 312 SDICCDRIKEIP 323 (409)
T ss_pred HHHHHHHHhhCC
Confidence 778888887764
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-05 Score=87.24 Aligned_cols=127 Identities=15% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC----ccccccc--ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR----KFDVSKF--GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~----pIDv~~~--gvl~asaqK~lGP~ 333 (621)
+++++++|.+..+.+.+|...|. +++++|+++|+|-+++ +|-. .++.... |++++| |.+|-.
T Consensus 183 i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~s--K~lg~g 260 (396)
T PRK04073 183 ITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILG--KALGGG 260 (396)
T ss_pred cccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEec--ccccCC
Confidence 44678899999988999998772 3568999999999988 4321 1122222 356654 999744
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+... ....+++.+| ...++..++|+.+.+. + +.++.+++.+++++.|+
T Consensus 261 g~~ig~~~~~~~i~~~~~~~-----------~~~~t~~~~~-~~~aaa~aaL~~~~~~-~---l~~~~~~~~~~l~~~L~ 324 (396)
T PRK04073 261 VFPISCVAANRDILGVFTPG-----------SHGSTFGGNP-LACAVSIAALEVLEEE-K---LPERSLELGEYFKEQLK 324 (396)
T ss_pred CCcceEEEEcHHHHhhhcCC-----------CCCCCCCCCH-HHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHH
Confidence 4 89999999987654320 1223454444 4455556889888765 4 34666777889999988
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
+++
T Consensus 325 ~l~ 327 (396)
T PRK04073 325 EID 327 (396)
T ss_pred hhc
Confidence 763
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=96.21 Aligned_cols=129 Identities=11% Similarity=0.078 Sum_probs=84.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccC-CCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIG-PAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lG-P~G--lg~liv 340 (621)
+++++++|++++..+.+|...|+ +++++|+++++|.+++.+....+++ ..|+++.|.+|+++ +.+ .|++++
T Consensus 214 i~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~ 293 (464)
T PLN02509 214 IGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAV 293 (464)
T ss_pred CCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEe
Confidence 56789999999999999999886 4568899999999998776433332 23599999999995 666 688887
Q ss_pred chhHH-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 REDLL-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~~ll-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++.+ +++.. +.. . .+ ...+.+..+.+...|+- ++.+.++..+.+..+.+.|++.+.+
T Consensus 294 ~~~~l~~~~~~-------~~~-~-~g---~~l~p~~A~l~lr~L~t------L~~R~~r~~~nA~~la~~L~~~p~V 352 (464)
T PLN02509 294 KGEKLAKEVYF-------LQN-S-EG---SGLAPFDCWLCLRGIKT------MALRIEKQQENARKIAMYLSSHPRV 352 (464)
T ss_pred ccHHHHHHHHH-------HHH-h-cC---CCcCHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 66543 22210 000 0 01 11222222222223332 4566777888888999999887743
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-05 Score=85.41 Aligned_cols=127 Identities=13% Similarity=0.198 Sum_probs=87.4
Q ss_pred CCCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCCcc--ccc--c--cceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSRKF--DVS--K--FGVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~pI--Dv~--~--~gvl~asaqK~lGP~ 333 (621)
+.+++++|.+.+..+.+|...| + +++++|+++|+|.+++ +|..+. ..+ . -|++++| |+++-.
T Consensus 184 i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg 261 (401)
T PRK00854 184 ITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGG 261 (401)
T ss_pred hCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCC
Confidence 4567999999999999999886 2 3568999999999998 766542 111 1 1355555 999422
Q ss_pred --ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 --GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 --Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
-+|.++.++++++.+.+. ....+++ .+....++..++|+.+.+. + +.++.+++.+++++.|.
T Consensus 262 ~~~ig~v~~~~~~~~~l~~~-----------~~~~t~~-~~~~~~aa~~a~L~~l~~~-~---~~~~~~~~~~~l~~~L~ 325 (401)
T PRK00854 262 FYPVSAVLSNSEVLGVLKPG-----------QHGSTFG-GNPLACAVARAALKVLTEE-G---MIENAAEMGAYFLEGLR 325 (401)
T ss_pred ccCeEEEEEcHHHHhcccCC-----------CCCCCCC-cCHHHHHHHHHHHHHHHHc-C---HHHHHHHHHHHHHHHHH
Confidence 278888999987654210 1123343 3555677788888888664 3 45677778888999888
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
+++
T Consensus 326 ~~~ 328 (401)
T PRK00854 326 SIR 328 (401)
T ss_pred hhc
Confidence 764
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-05 Score=85.12 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=78.9
Q ss_pred CCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCCC---ccc-ccccc--eEEeccccccCCCc--c
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLSR---KFD-VSKFG--VIIAGAQKNIGPAG--I 335 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~~---pID-v~~~g--vl~asaqK~lGP~G--l 335 (621)
++++++|++|+-.|.||...+. +.+ .+++++|+|-+=.-... ++. ++..+ +++.|-=|.+|.+| +
T Consensus 150 ~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRv 229 (364)
T PRK04781 150 ASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARI 229 (364)
T ss_pred ccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEEEecChhhccccccee
Confidence 5678999999999999999984 222 34789999987442221 112 13334 77888999999888 7
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHH---HHHHHHHHHHHHHHHHHHc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLA---KMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~---~i~~r~~~la~~L~e~L~~ 412 (621)
|+++..+++++.+.... ..++ .+..... .++.++.+ |..+ ...++.++..+.+.+.|+.
T Consensus 230 Gy~v~~~~l~~~l~~~~-------------~~~~-~~~~~~~---~a~~~l~~-~~~~~~~~~~~~~~~~r~~l~~~L~~ 291 (364)
T PRK04781 230 GSLIANAELIAVLRRCQ-------------APYP-VPTPCAA---LAEQALSA-PALAVTARRVAEVRAERERLHAALAQ 291 (364)
T ss_pred eeeeCCHHHHHHHHhcc-------------CCCC-CCHHHHH---HHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999887664311 1111 2222222 22334432 2222 3333456666778888877
Q ss_pred cCCc
Q psy8733 413 SDKF 416 (621)
Q Consensus 413 ~~g~ 416 (621)
++|+
T Consensus 292 ~~~~ 295 (364)
T PRK04781 292 LPGV 295 (364)
T ss_pred CCCC
Confidence 6543
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.6e-07 Score=98.12 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=57.2
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccCCCc--cEEEEEc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIGPAG--ITVVIVR 341 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lGP~G--lg~livr 341 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++.+.....++ ..|+++.|.+|++|++| +|.++++
T Consensus 139 l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~ 218 (418)
T TIGR01326 139 IDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVD 218 (418)
T ss_pred cCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEe
Confidence 45678999999888999999986 4568899999999998664222222 13599999999998877 7888886
Q ss_pred hh
Q psy8733 342 ED 343 (621)
Q Consensus 342 ~~ 343 (621)
++
T Consensus 219 ~~ 220 (418)
T TIGR01326 219 GG 220 (418)
T ss_pred cc
Confidence 53
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-06 Score=93.98 Aligned_cols=127 Identities=10% Similarity=0.098 Sum_probs=78.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccC-CCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIG-PAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lG-P~G--lg~liv 340 (621)
+++++++|++++-.+.+|...|+ +++++|+++|+|.+++.+....+++ ..|++++|.+|++| |.. .|+++.
T Consensus 131 i~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~ 210 (380)
T PRK06176 131 IKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTT 210 (380)
T ss_pred cCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEe
Confidence 56789999998888999999986 4568899999999998654322222 23499999999996 543 555666
Q ss_pred ch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 341 RE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ--GGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 341 r~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~--gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++ ++.+++.. +.. ... .+.+.... |+... ..++.+.+++.+.+..+-+.|++.+.+
T Consensus 211 ~~~~~~~~~~~-------~~~---~~G--~~~~~~~~--------~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v 269 (380)
T PRK06176 211 NNEALAQEIAF-------FQN---AIG--GVLGPQDS--------WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKV 269 (380)
T ss_pred cHHHHHHHHHH-------HHH---Hhc--CCCCHHHH--------HHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 54 34343311 000 000 11111111 22223 134566666667777888888887643
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.9e-06 Score=89.10 Aligned_cols=130 Identities=14% Similarity=0.202 Sum_probs=81.8
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---CCcc-cc---ccc-c--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---SRKF-DV---SKF-G--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~~pI-Dv---~~~-g--vl~asaqK~lG 331 (621)
+.+++++|++++..|+||...+. +++++++++|+|.+-.-. ..+. .+ ..+ + +++.|--|.+|
T Consensus 159 l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~ 238 (384)
T PRK12414 159 ITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYH 238 (384)
T ss_pred cCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEeccccccc
Confidence 44678999999999999998752 345789999999885421 1111 11 222 2 88889999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++..+++.+++..... ...+ .++.+...++. +++.+......+.+..+++.+.+.+.
T Consensus 239 ~pGlRiG~~v~~~~l~~~l~~~~~-----------~~~~-~~s~~~q~a~~---~~l~~~~~~~~~~~~~~~~r~~l~~~ 303 (384)
T PRK12414 239 VTGWRVGYCLAPAELMDEIRKVHQ-----------FMVF-SADTPMQHAFA---EALAEPASYLGLGAFYQRKRDLLARE 303 (384)
T ss_pred CccceEEEEecCHHHHHHHHHHHh-----------heec-CCCcHHHHHHH---HHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 888 5999999988776532110 0112 22233333333 33332112344566677788888888
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|++.+
T Consensus 304 L~~~g 308 (384)
T PRK12414 304 LAGSR 308 (384)
T ss_pred HHhCC
Confidence 88763
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-05 Score=84.62 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=82.5
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEeccccc-C--CCc---cccc----ccc--eEEeccccccC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF-L--SRK---FDVS----KFG--VIIAGAQKNIG 331 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~-G--~~p---IDv~----~~g--vl~asaqK~lG 331 (621)
+++++|++++..|.||...+. +++++++++|+|.+... . ..+ ++.+ ..+ +++.|--|.+|
T Consensus 141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 220 (357)
T TIGR03539 141 VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSN 220 (357)
T ss_pred cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccC
Confidence 468999999999999998873 34678999999988642 1 111 1111 112 78889999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|.++.++++.+++... . ......++.....++.++|+. +. .++.+.++.+++.+.+++.
T Consensus 221 ~~G~R~G~~i~~~~~~~~~~~~-------~-----~~~~~~~~~~~q~~~~~~l~~--~~-~~~~~~~~~~~~~~~~~~~ 285 (357)
T TIGR03539 221 LAGYRAGFVAGDPALVAELLTV-------R-----KHAGLMVPAPVQAAMVAALGD--DG-HVAEQKARYAARRAQLKPA 285 (357)
T ss_pred CCceeEEEEecCHHHHHHHHHH-------H-----hhcccCCCHHHHHHHHHHcCC--HH-HHHHHHHHHHHHHHHHHHH
Confidence 888 68888888877654210 0 011123444455555555532 11 3566677777788888888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|.+.
T Consensus 286 L~~~ 289 (357)
T TIGR03539 286 LEKA 289 (357)
T ss_pred HHHc
Confidence 8875
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.6e-05 Score=83.05 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=77.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---C-ccc---cccc-c-eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---R-KFD---VSKF-G-VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~-pID---v~~~-g-vl~asaqK~lGP 332 (621)
+++++++|.+|+-.|.||...+. +++++|+++|+|-+-.-.. . ... +... . +++.|-=|.+|.
T Consensus 165 ~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~ 244 (401)
T TIGR01264 165 IDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLV 244 (401)
T ss_pred hccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCC
Confidence 34568999999999999998873 3357899999998765221 1 112 2222 2 677888999998
Q ss_pred Cc--cEEEEEch------hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVRE------DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 333 ~G--lg~livr~------~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
+| +|+++..+ +.++.+. .. ......++.....++..+|+--.+. =++.+.++.++..+
T Consensus 245 ~GlRiG~iv~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~q~a~~~~l~~~~~~-~l~~~~~~~~~~r~ 310 (401)
T TIGR01264 245 PGWRLGWIIIHDRRGILRDIRDGLV----------KL---SQRILGPCTIVQGALPSILLRTPQE-YFDGTLSVLESNAM 310 (401)
T ss_pred ccceEEEEEecCcchhHHHHHHHHH----------HH---hhccCCCCcHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHH
Confidence 88 78888764 2222211 00 0011223333444444444210011 25566666777777
Q ss_pred HHHHHHHccCC
Q psy8733 405 LLYQEIDNSDK 415 (621)
Q Consensus 405 ~L~e~L~~~~g 415 (621)
++++.|+.++|
T Consensus 311 ~l~~~L~~~~~ 321 (401)
T TIGR01264 311 LCYGALAAVPG 321 (401)
T ss_pred HHHHHHHhCCC
Confidence 88888887654
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.8e-06 Score=88.05 Aligned_cols=125 Identities=11% Similarity=0.178 Sum_probs=82.5
Q ss_pred CceEEEEecccccccccccc-----c---cccCCCcEEEecccccCCCc--------cccccc-c-eEEeccccccCCCc
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----I---PDSQGIPLVSDMSSNFLSRK--------FDVSKF-G-VIIAGAQKNIGPAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i---~~~~g~llvvDavSs~G~~p--------IDv~~~-g-vl~asaqK~lGP~G 334 (621)
++++|.++...++||...+. + ++++++++|+|-+.+..... ..++.. . +++.|--|.+|.+|
T Consensus 148 ~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G 227 (363)
T PF00155_consen 148 RPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPG 227 (363)
T ss_dssp TEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGG
T ss_pred ccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccc
Confidence 56899999999999998874 3 56789999999988875544 223333 2 88999999999888
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHHHHHHH
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK---RQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~---~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+|++++++++.+.+.. +. . .... +...-.++..++.--. +. ++++.++.+++.+.+++.
T Consensus 228 lRvG~i~~~~~~~~~l~~-------~~---~---~~~~-~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~ 291 (363)
T PF00155_consen 228 LRVGYIVAPPELIERLRR-------FQ---R---SGLS-SSPMQAAAAAALSDPELVEKW--LEELRERLRENRDLLREA 291 (363)
T ss_dssp GTEEEEEEEHHHHHHHHH-------HH---H---HTTS-SHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhh-------cc---c---cccc-cchhhHHHHHhhhcccccccc--cccchhhHHHHHHHHHHH
Confidence 8999998888776532 00 0 0111 2222223322332222 12 567778888888889998
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 292 L~~~ 295 (363)
T PF00155_consen 292 LEEI 295 (363)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-05 Score=81.01 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=55.9
Q ss_pred CCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCCC---ccc-ccccc--eEEeccccccCCCc--cE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLSR---KFD-VSKFG--VIIAGAQKNIGPAG--IT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~~---pID-v~~~g--vl~asaqK~lGP~G--lg 336 (621)
+++++|++|+-.|.||...+. +.+ .+++++|+|-+-.-... ++. ++..+ +++.|-=|.+|.+| +|
T Consensus 153 ~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG 232 (357)
T PRK14809 153 DGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLG 232 (357)
T ss_pred cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhhe
Confidence 357899999999999999984 222 23788999998653321 111 12233 66677789999888 79
Q ss_pred EEEEchhHHhhhC
Q psy8733 337 VVIVREDLLEYAL 349 (621)
Q Consensus 337 ~livr~~ll~~~~ 349 (621)
+++.++++++++.
T Consensus 233 ~~~~~~~~~~~~~ 245 (357)
T PRK14809 233 YAVVPEEWADAYA 245 (357)
T ss_pred eeecCHHHHHHHH
Confidence 9999998887663
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-05 Score=86.12 Aligned_cols=132 Identities=12% Similarity=0.150 Sum_probs=83.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---CCccc---ccc-cc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---SRKFD---VSK-FG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~~pID---v~~-~g--vl~asaqK~lGP 332 (621)
+.+++++|++++-.|.||...+. +++++++++|+|-+-.-. ..... ++. .+ +++.|-=|.+|-
T Consensus 159 ~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l 238 (384)
T PRK06348 159 ITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAM 238 (384)
T ss_pred hCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCC
Confidence 34578899999889999998873 345789999999875422 11112 222 12 666777899997
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++..+++.+.+.. + . ....+ +++.....++..+++...+. ++.+.+..+++.+++++.|
T Consensus 239 ~GlRiG~~v~~~~~~~~~~~-------~---~-~~~~~-~~~~~~q~~~~~~l~~~~~~--~~~~~~~~~~r~~~~~~~L 304 (384)
T PRK06348 239 TGWRIGYVIAPDYIIETAKI-------I---N-EGICF-SAPTISQRAAIYALKHRDTI--VPLIKEEFQKRLEYAYKRI 304 (384)
T ss_pred ccccceeeecCHHHHHHHHH-------H---H-HhccC-CCCHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHHHHHHH
Confidence 77 7999998887765421 0 0 01112 33444445555555432222 4566777777778888888
Q ss_pred HccCC
Q psy8733 411 DNSDK 415 (621)
Q Consensus 411 ~~~~g 415 (621)
..+++
T Consensus 305 ~~~~~ 309 (384)
T PRK06348 305 ESIPN 309 (384)
T ss_pred hcCCC
Confidence 76643
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.3e-06 Score=91.85 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=81.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++-.+++|...|+ +++++|+++|+|.+.+.+. .|++. ..|+++.|.+|++| |.+ .|+++
T Consensus 131 i~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~~~-g~Divv~S~sK~l~G~~~~~~G~~v 209 (377)
T PRK07671 131 IRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISL-GADIVLHSATKYLGGHSDVVAGLVV 209 (377)
T ss_pred cCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCChhhh-CCeEEEecCcccccCCccceeEEEE
Confidence 56789999999999999999886 4568899999999987443 44432 12599999999996 664 45566
Q ss_pred Ech-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++ ++.+++.. +.. ..-.+.+....+.+...++ -+..+.+++.+.+..|-+.|++.+++
T Consensus 210 ~~~~~l~~~~~~-------~~~-----~~g~~~~~~~a~l~~~~l~------tl~~R~~~~~~na~~la~~L~~~~~v 269 (377)
T PRK07671 210 VNSPELAEDLHF-------VQN-----STGGILGPQDSWLLLRGLK------TLGIRMEEHETNSRAIAEFLNNHPAV 269 (377)
T ss_pred eCcHHHHHHHHH-------HHH-----hhcCCCCHHHHHHHHcCcC------hHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 654 45554421 010 0012222222222222222 24556677778888888999887754
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.7e-05 Score=82.94 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=75.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccc--cCCCcEEEecccccCCC----c--cc-cccc-c--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPD--SQGIPLVSDMSSNFLSR----K--FD-VSKF-G--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~--~~g~llvvDavSs~G~~----p--ID-v~~~-g--vl~asaqK~lGP 332 (621)
+++++++|++++..|.||...+. +.+ ..++++|+|.+-.-... + +. +++. + +++.|-=|.+|.
T Consensus 156 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l 235 (371)
T PRK05166 156 VARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGL 235 (371)
T ss_pred hhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhc
Confidence 45578999999999999999984 222 24788999997542221 1 11 1222 2 677888999998
Q ss_pred Cc--cEEEEE-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 ~G--lg~liv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+| +|++++ ++++.+.+... ...++ ++.....++..++. ..+-+++..+..+++.+++++.
T Consensus 236 ~GlRiG~~i~~~~~l~~~~~~~-------------~~~~~-~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~l~~~ 298 (371)
T PRK05166 236 AGLRVGYGLVSDPELVGLLDRV-------------RTPFN-VNGAAQAAALAALD---DEEHLAKGVALALAERERLKKE 298 (371)
T ss_pred chhheeeeecCCHHHHHHHHHh-------------ccCCC-CCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHH
Confidence 88 688776 45665544210 01122 23333333333332 2212555556666667778888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 299 L~~~ 302 (371)
T PRK05166 299 LAEM 302 (371)
T ss_pred HHHC
Confidence 8876
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.3e-05 Score=82.65 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=55.9
Q ss_pred CCceEEEEecccccccccccc-----ccc-cCCCcEEEecccccCCC--cc-cccccc--eEEeccccccCCCc--cEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPD-SQGIPLVSDMSSNFLSR--KF-DVSKFG--VIIAGAQKNIGPAG--ITVV 338 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~-~~g~llvvDavSs~G~~--pI-Dv~~~g--vl~asaqK~lGP~G--lg~l 338 (621)
+++++|++|+-.|.||...+. +.+ .+++++|+|-+-.-... .+ .+.+.+ +++.|-=|.+|.+| +|++
T Consensus 167 ~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~ 246 (374)
T PRK02610 167 PPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYA 246 (374)
T ss_pred CCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeee
Confidence 578999999999999999884 222 35899999987542211 11 122333 77888899999888 7889
Q ss_pred EEchhHHhhhC
Q psy8733 339 IVREDLLEYAL 349 (621)
Q Consensus 339 ivr~~ll~~~~ 349 (621)
+.++++++++.
T Consensus 247 v~~~~l~~~l~ 257 (374)
T PRK02610 247 IGHPELIAVLE 257 (374)
T ss_pred ecCHHHHHHHH
Confidence 98888877653
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.1e-06 Score=88.54 Aligned_cols=130 Identities=10% Similarity=0.064 Sum_probs=81.0
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---C-cc---cccc-cc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---R-KF---DVSK-FG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~-pI---Dv~~-~g--vl~asaqK~lG 331 (621)
+.+++++|.+++..++||...+. +++++++++|+|.+-.... . .. .+.. .+ +++.|--|.+|
T Consensus 160 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~ 239 (386)
T PRK09082 160 ISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYH 239 (386)
T ss_pred cCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhcc
Confidence 45678999998888999987652 3467899999999753221 1 11 2222 22 67778899999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++..+++++.+... . ....+ +++.....++...++.-.+ -++++.+..+++.+.+++.
T Consensus 240 ~~G~RiG~iv~~~~l~~~~~~~-------~----~~~~~-~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 305 (386)
T PRK09082 240 VTGWKVGYCVAPAALSAEFRKV-------H----QYNTF-TVNTPAQLALADYLRAEPE--HYLELPAFYQAKRDRFRAA 305 (386)
T ss_pred chhhhhhhhhCCHHHHHHHHHH-------H----hhhcC-CCChHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHH
Confidence 888 69999998887655321 0 00112 2333333343333331111 2556667777888888898
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|.+.
T Consensus 306 L~~~ 309 (386)
T PRK09082 306 LANS 309 (386)
T ss_pred HHhC
Confidence 8875
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.9e-05 Score=83.42 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=83.0
Q ss_pred CCCceEEEEecccccccccccc---------ccccCCCcEEEecccccCC---Ccc--ccccc--ceEEeccccccCC-C
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLS---RKF--DVSKF--GVIIAGAQKNIGP-A 333 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~---~pI--Dv~~~--gvl~asaqK~lGP-~ 333 (621)
.+++++|.+....+.+|+..|. +++++|+++|+|-+++-.. ..+ +.... |++.+| |++|+ -
T Consensus 181 ~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~s--K~l~~G~ 258 (398)
T PRK03244 181 DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLA--KGLGGGL 258 (398)
T ss_pred cCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEc--hhhhCCc
Confidence 3578899999888999998872 3568999999999986221 112 22222 366665 99972 2
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.+|.++.++++.+.+.+. ....+++.++ ....+..++|+.+.+. ...++.+++.+++++.|+++
T Consensus 259 ~ig~~~~~~~~~~~~~~~-----------~~~~t~~~~~-~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~~ 322 (398)
T PRK03244 259 PIGACLAFGPAADLLTPG-----------LHGSTFGGNP-VACAAALAVLDTIASE----GLLENAERLGEQLRAGIEAL 322 (398)
T ss_pred ccEEEEEcHHHHhhccCC-----------CCcCCCCCCH-HHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHhc
Confidence 389999999977644210 1223454443 4456666677766543 45677778888899999875
Q ss_pred C
Q psy8733 414 D 414 (621)
Q Consensus 414 ~ 414 (621)
+
T Consensus 323 ~ 323 (398)
T PRK03244 323 G 323 (398)
T ss_pred C
Confidence 3
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00013 Score=78.41 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=79.6
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cccc----ccccc--eEEeccccccCCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKFD----VSKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pID----v~~~g--vl~asaqK~lGP~ 333 (621)
.+++++|.+|+-.|+||...+. +++++++++|+|.+-.-.. .+.. ++..+ +++.|-=|.+|.+
T Consensus 139 ~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~ 218 (354)
T PRK06358 139 KEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIP 218 (354)
T ss_pred ccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCc
Confidence 3468999999999999999873 2457899999998753221 1111 22334 7788999999977
Q ss_pred c--cEEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 334 G--lg~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
| +|+++.. +.+.+++.... . ..+.+...-.++..+++.- +. ++++.+..++..+.+++.|
T Consensus 219 G~RiG~lv~~~~~~~~~~~~~~-------------~-~~~~~~~~q~~~~~~l~~~-~~--~~~~~~~~~~~r~~l~~~L 281 (354)
T PRK06358 219 GLRLGYGLTSNKNLAEKLLQMR-------------E-PWSINTFADLAGQTLLDDK-EY--IKKTIQWIKEEKDFLYNGL 281 (354)
T ss_pred chhheeeecCCHHHHHHHHHhC-------------C-CCcchHHHHHHHHHHhccH-HH--HHHHHHHHHHHHHHHHHHH
Confidence 7 7778775 55655543211 0 1234444445555555310 11 3455566666777888888
Q ss_pred HccCC
Q psy8733 411 DNSDK 415 (621)
Q Consensus 411 ~~~~g 415 (621)
++++|
T Consensus 282 ~~~~~ 286 (354)
T PRK06358 282 SEFKG 286 (354)
T ss_pred hcCCC
Confidence 77654
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.5e-06 Score=89.17 Aligned_cols=131 Identities=10% Similarity=0.060 Sum_probs=85.8
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Ccc---cccc-cc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKF---DVSK-FG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pI---Dv~~-~g--vl~asaqK~lGP 332 (621)
+.+++++|++++-.|.||...+. +++++++++|+|-+-.-.. .+. .+.. .+ +++.|-=|.+|-
T Consensus 184 ~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~ 263 (413)
T PLN00175 184 FTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSL 263 (413)
T ss_pred cCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccC
Confidence 45678999999999999998873 3457899999999754332 111 2222 23 667788899998
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++.++++.+.+.. .. .....+++.+.-+++..+|+.-.+ -++.+.++.+++.+.+++.|
T Consensus 264 ~G~RiG~~v~~~~l~~~l~~-------~~-----~~~~~~~s~~~Q~a~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~L 329 (413)
T PLN00175 264 TGWKIGWAIAPPHLTWGVRQ-------AH-----SFLTFATATPMQWAAVAALRAPES--YYEELKRDYSAKKDILVEGL 329 (413)
T ss_pred cchheeeeEeCHHHHHHHHH-------HH-----hhccCCCCHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 88 7999999988765521 00 011123344444554455532111 25677778888888999999
Q ss_pred HccC
Q psy8733 411 DNSD 414 (621)
Q Consensus 411 ~~~~ 414 (621)
++.+
T Consensus 330 ~~~g 333 (413)
T PLN00175 330 KEVG 333 (413)
T ss_pred HHCC
Confidence 8763
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-05 Score=86.85 Aligned_cols=129 Identities=9% Similarity=0.126 Sum_probs=79.5
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEeccc-ccCC--Ccccccccc---eEEeccccccCCCc-
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSS-NFLS--RKFDVSKFG---VIIAGAQKNIGPAG- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavS-s~G~--~pIDv~~~g---vl~asaqK~lGP~G- 334 (621)
+++++++|.+++-.|.||...+. +++++++++|+|-+- .+.. .+...-.++ +.+.|..|.+|.+|
T Consensus 160 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~ 239 (388)
T PRK07337 160 WGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGW 239 (388)
T ss_pred cCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchh
Confidence 45688999999999999998873 235789999999552 2321 122222232 55678899999888
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHH
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG---LAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG---l~~i~~r~~~la~~L~e~L 410 (621)
+|+++..+++++++..... ....+++.....++..++ .+. + +.+..++.+++.+++.+.|
T Consensus 240 RiG~~~~~~~l~~~l~~~~~------------~~~~~~s~~~q~~~~~~l---~~~-~~~~~~~~~~~~~~~r~~~~~~L 303 (388)
T PRK07337 240 RLGWLVVPEALVGTFEKLAQ------------NLFICASALAQHAALACF---EPD-TLAIYERRRAEFKRRRDFIVPAL 303 (388)
T ss_pred heeeeecCHHHHHHHHHHHH------------HhccCCChHHHHHHHHHh---ccC-chHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888776532100 111122333333333333 221 2 3445566667777788888
Q ss_pred HccC
Q psy8733 411 DNSD 414 (621)
Q Consensus 411 ~~~~ 414 (621)
++.+
T Consensus 304 ~~~~ 307 (388)
T PRK07337 304 ESLG 307 (388)
T ss_pred HhcC
Confidence 7753
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.3e-05 Score=83.29 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=82.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cccc---ccc---cceEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKFD---VSK---FGVIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pID---v~~---~gvl~asaqK~lGP 332 (621)
+.+++++|++++-.|+||...+. +++++++++|+|-+-.-.. .+.. +.. ..+++.|-=|.+|.
T Consensus 176 ~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~ 255 (410)
T PRK06290 176 IKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNM 255 (410)
T ss_pred hcccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCC
Confidence 34578999999888999999983 3467899999998765332 2222 222 12888899999999
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG-LAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG-l~~i~~r~~~la~~L~e~ 409 (621)
+| +|+++.++++++.+..... ....+++ .....+ +..++.+. . ++.+.++.+++.+.+++.
T Consensus 256 ~GlRiG~ii~~~~l~~~l~~~~~-----------~~~~~~~-~~~q~a---a~~~l~~~-~~~~~~~~~~~~~~~~l~~~ 319 (410)
T PRK06290 256 TGWRLAFVVGNELIVKAFATVKD-----------NNDSGQF-IAIQKA---GIYALDHP-EITEKIREKYSRRLDKLVKI 319 (410)
T ss_pred chhheEeEEeCHHHHHHHHHHHh-----------ccccCCc-HHHHHH---HHHHhhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 99 7999999888765532110 0111221 222223 23333331 2 456667777778888888
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|.+.+
T Consensus 320 L~~~g 324 (410)
T PRK06290 320 LNEVG 324 (410)
T ss_pred HHhCC
Confidence 88763
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.7e-06 Score=98.46 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=86.6
Q ss_pred CCceEEEEeccccccccccc-c-----ccccCCCcEEEecccccCCCcc-cccccc--eEEecccccc------CCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFN-Y-----IPDSQGIPLVSDMSSNFLSRKF-DVSKFG--VIIAGAQKNI------GPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p-~-----i~~~~g~llvvDavSs~G~~pI-Dv~~~g--vl~asaqK~l------GP~Glg 336 (621)
+++++|.+++.+| +|+..| + +++++|..+++|++|..+...+ +..++| +++++.||+| |+||+|
T Consensus 627 ~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G 705 (939)
T TIGR00461 627 DELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMG 705 (939)
T ss_pred CceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeE
Confidence 5899999999999 688776 4 3467899999999998755444 446665 9999999965 366679
Q ss_pred EEEEchhHHhhhCCCC-CceeeccccccC--CCccC--CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 337 VVIVREDLLEYALPIT-PTVFHFKINADN--NSVYN--TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 337 ~livr~~ll~~~~~~~-P~~ld~~~~~~~--~s~~~--TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
++.+|+++...+.... ....+... .+. +...+ +=+..........+..+-.+ |+.++.+....++.|+.+.|+
T Consensus 706 ~i~vr~~L~~~lPg~~v~~t~d~~g-req~Iga~s~~~~g~a~~~l~a~~yi~~lG~~-GL~~~a~~ailnAnYl~~rL~ 783 (939)
T TIGR00461 706 PIGVKSHLIPFLPKHDVVSMITGIG-GSKSIGSVSAAPYGSASILPISWMYIKMMGNE-GLPKASVVAILNANYMATRLK 783 (939)
T ss_pred EEEEhhhchhhcCCCcccccccCCC-CccccccccccccCcHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 9999987543332110 00011110 010 11111 11111111122233334344 788999999999999999998
Q ss_pred c
Q psy8733 412 N 412 (621)
Q Consensus 412 ~ 412 (621)
+
T Consensus 784 ~ 784 (939)
T TIGR00461 784 D 784 (939)
T ss_pred c
Confidence 7
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-05 Score=85.10 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=81.8
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc----cccccc-c--eEEeccccccCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK----FDVSKF-G--VIIAGAQKNIGP 332 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p----IDv~~~-g--vl~asaqK~lGP 332 (621)
.+++++|.+++-.|.||...+. +++++++++|+|-+-.-.. .+ ..++.+ + +++.|--|.+|.
T Consensus 163 ~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~ 242 (405)
T PRK09148 163 IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSM 242 (405)
T ss_pred cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCC
Confidence 4678999999877899999984 3457899999998764321 11 122222 2 457888999999
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++.++++++++... . .....+++...-.++..+|+.-.+ =++.+.++.+++.+.+.+.|
T Consensus 243 pGlR~G~~v~~~~~i~~l~~~-------~-----~~~~~~~~~~~q~~~~~~L~~~~~--~~~~~~~~~~~~r~~l~~~L 308 (405)
T PRK09148 243 AGWRMGFAVGNERLIAALTRV-------K-----SYLDYGAFTPIQVAATAALNGPQD--CIAEMRELYKKRRDVLVESF 308 (405)
T ss_pred cchheeeeeCCHHHHHHHHHH-------H-----HHhccCCChHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHH
Confidence 99 89999998888765321 0 011112233333333334431111 25666677777788888888
Q ss_pred HccC
Q psy8733 411 DNSD 414 (621)
Q Consensus 411 ~~~~ 414 (621)
++.+
T Consensus 309 ~~~~ 312 (405)
T PRK09148 309 GRAG 312 (405)
T ss_pred HHcC
Confidence 7753
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.4e-06 Score=92.42 Aligned_cols=140 Identities=11% Similarity=0.131 Sum_probs=84.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccCCC--ccEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPA--GITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~--Glg~liv 340 (621)
+++++++|++++..|++|...|+ +++++++++|+|.+++.+...-++ ++ |+++.|.+|++|.+ .+|.+++
T Consensus 140 i~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~-~~gaDivv~S~tK~l~G~g~~~gG~v~ 218 (425)
T PRK06084 140 IDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPF-EHGADIVVHSLTKYIGGHGTSIGGIVV 218 (425)
T ss_pred hccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCCEEEECchhcccccccceeEEEE
Confidence 45689999999999999999996 456889999999999876543333 33 49999999999633 3566666
Q ss_pred c-hhH-Hhhh-------CCCCCceeeccccccCC-------------CccC-CchHHHHHHHHHHHHHHHhhCCHHHHHH
Q psy8733 341 R-EDL-LEYA-------LPITPTVFHFKINADNN-------------SVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQ 397 (621)
Q Consensus 341 r-~~l-l~~~-------~~~~P~~ld~~~~~~~~-------------s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~ 397 (621)
. .+. +... ....|+|++......-+ ..+| +.+-+..+. . +.....++.+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l---~---lrgl~tl~~R~~ 292 (425)
T PRK06084 219 DSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFL---I---LQGLETLALRME 292 (425)
T ss_pred eCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHH---H---HcCcCcHHHHHH
Confidence 4 321 1111 11123333211000000 0011 111111111 1 111124777888
Q ss_pred HHHHHHHHHHHHHHccCCc
Q psy8733 398 NSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 398 r~~~la~~L~e~L~~~~g~ 416 (621)
++.+.+..+.+.|++.+++
T Consensus 293 ~~~~na~~la~~L~~~p~v 311 (425)
T PRK06084 293 RHTENALKVARYLQQHPQV 311 (425)
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 8888999999999998854
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.4e-06 Score=89.69 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=79.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++-.+.+|...++ +++++|+++|+|.+.+.+ ..|++. ..++++.|..|+++ +.+ .|+++
T Consensus 133 i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~-g~di~i~S~sK~~~g~~d~~~G~iv 211 (366)
T PRK08247 133 ITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEE-GADIVIHSATKYLGGHNDVLAGLVV 211 (366)
T ss_pred cccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCchhc-CCcEEEeecceeccCCCceeeeEEe
Confidence 45689999998888888887775 456889999999997443 344321 23599999999996 544 45566
Q ss_pred Ec-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 340 VR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 340 vr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.+ +++.+++.. +.. . .-.+++.+..+.+..+++. ++.+.++.++.++.+.+.|++.+++.
T Consensus 212 ~~~~~l~~~~~~-------~~~---~--~g~~~s~~~a~l~~~~l~t------l~~r~~~~~~~a~~l~~~L~~~p~v~ 272 (366)
T PRK08247 212 AKGQELCERLAY-------YQN---A--AGAVLSPFDSWLLIRGMKT------LALRMRQHEENAKAIAAFLNEQPGVT 272 (366)
T ss_pred cChHHHHHHHHH-------HHH---h--cCCCCChHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 55 445444321 000 0 0011222222332233332 44555667888889999999887553
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=87.73 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=74.7
Q ss_pred CCC-CceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEE
Q psy8733 270 RDP-EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVV 338 (621)
Q Consensus 270 i~~-~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~l 338 (621)
+++ ++++|++-+..+.++...|+ ++++++ ++||++++.+. .|++. ..|++++|++|+++ +.+ -|++
T Consensus 144 l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~-gaDivv~S~tK~i~G~~d~~gG~v 220 (384)
T PRK06434 144 FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNPLDL-GADVVIHSATKYISGHSDVVMGVA 220 (384)
T ss_pred ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCchhc-CCCEEEeecccccCCCCCceEEEE
Confidence 444 68999999988888988886 345666 57899965443 35542 13499999999995 664 3445
Q ss_pred EEch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 339 IVRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 339 ivr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+.++ ++.+++.. +.. ..+... .| ...+ ..+.-+ .-++.+.+++.+.+..+.+.|++.|.
T Consensus 221 v~~~~~~~~~~~~-------~~~--~~G~~~-~~--~~A~---l~~~gL---~tL~~R~~r~~~~a~~~a~~L~~~p~ 280 (384)
T PRK06434 221 GTNNKSIFNNLVE-------RRK--TLGSNP-DP--IQAY---LALRGL---KTLGLRMEKHNKNGMELARFLRDSKK 280 (384)
T ss_pred ecCcHHHHHHHHH-------HHH--hcCCCC-CH--HHHH---HHHhCC---CcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4533 34444321 000 001111 11 1111 112222 13677888888999999999998773
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.9e-06 Score=89.50 Aligned_cols=128 Identities=8% Similarity=0.036 Sum_probs=79.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++..+.+|...++ +++++|+++|+|.+++.|. .|++.. .|+.+.|..|+++ ..| .|.++
T Consensus 147 i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~G-aDi~v~S~tK~~~g~~~~~gG~v~ 225 (394)
T PRK07050 147 IQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHG-VDISVQALTKYQSGGSDVLMGATI 225 (394)
T ss_pred cCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHHHcC-CeEEEEECCceecCCCCeeEEEEE
Confidence 56789999999888888888775 3567899999999998876 444442 2588999999995 554 45455
Q ss_pred E-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 V-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 v-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
. ++++.+++.. +... .+. ...|.... .+++.++ .+..+.+++.+.+..|-+.|++.+++
T Consensus 226 ~~~~~~~~~~~~-------~~~~--~G~--~~~~~~a~----l~lr~l~---tl~~Rl~~~~~~a~~la~~L~~~p~v 285 (394)
T PRK07050 226 TADAELHAKLKL-------ARMR--LGI--GVSADDCS----LVLRGLP---SLQVRLAAHDRSALEVAEWLKARPEI 285 (394)
T ss_pred ECCHHHHHHHHH-------HHHh--cCC--CCCHHHHH----HHHcCCC---cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5 4566555421 1100 011 12222111 1222221 34455566666777888888887744
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00022 Score=78.22 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=51.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---CCc-cc---ccccc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---SRK-FD---VSKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~~p-ID---v~~~g--vl~asaqK~lGP 332 (621)
+.++++.+.+|+-.|.||...+. +++++++++|+|-+-.-. ..+ .. ++..+ +++.|-=|.++.
T Consensus 167 ~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 246 (409)
T PLN00143 167 ADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMI 246 (409)
T ss_pred cccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCC
Confidence 34578889898889999999883 345789999999875422 122 11 23333 677888999987
Q ss_pred Cc--cEEEEEc
Q psy8733 333 AG--ITVVIVR 341 (621)
Q Consensus 333 ~G--lg~livr 341 (621)
+| +|+++..
T Consensus 247 pGlRvG~~v~~ 257 (409)
T PLN00143 247 PGWGLGWLVTC 257 (409)
T ss_pred CccceEEEEee
Confidence 77 7888773
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-05 Score=86.91 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=93.4
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---c-----cccccceEEeccccccC-CCccEEEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---F-----DVSKFGVIIAGAQKNIG-PAGITVVI 339 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---I-----Dv~~~gvl~asaqK~lG-P~Glg~li 339 (621)
+-+|..+...|.+|..=|+ +++++++.++|||+-.-...- + .++..|-+....|||++ |.+.|+++
T Consensus 195 p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l 274 (373)
T PF00282_consen 195 PFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLL 274 (373)
T ss_dssp EEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEE
T ss_pred ceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEE
Confidence 3378889999999999886 456899999999865431111 1 12334589999999998 99999999
Q ss_pred EchhH-HhhhCCCCCceeecccc-------ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 340 VREDL-LEYALPITPTVFHFKIN-------ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 340 vr~~l-l~~~~~~~P~~ld~~~~-------~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+|++- +.......+.|+..... .......++= =+.+..+-.+++.+-.+ |+.++.++..++++++.+.|+
T Consensus 275 ~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~-G~~~~i~~~~~~a~~l~~~l~ 352 (373)
T PF00282_consen 275 VRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGRE-GYRERIRRCIELARYLADRLR 352 (373)
T ss_dssp ESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccchHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99864 43332222334321110 0000111122 23445555677777666 899999999999999999999
Q ss_pred ccCCcccCc
Q psy8733 412 NSDKFYECP 420 (621)
Q Consensus 412 ~~~g~~~~~ 420 (621)
+.++|.+..
T Consensus 353 ~~~~~el~~ 361 (373)
T PF00282_consen 353 KDPRFELVN 361 (373)
T ss_dssp TSTTEEESS
T ss_pred hCCCEEEEc
Confidence 998877654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00012 Score=79.85 Aligned_cols=125 Identities=11% Similarity=0.213 Sum_probs=79.1
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cC--CCccc--cccc--ceEEeccccccCCC--
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FL--SRKFD--VSKF--GVIIAGAQKNIGPA-- 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G--~~pID--v~~~--gvl~asaqK~lGP~-- 333 (621)
++..+|.+-.....+|+..| + +++++|+++++|-+++ +| ...+. ...+ |++++| |.++-.
T Consensus 185 ~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~ 262 (401)
T TIGR01885 185 PNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVY 262 (401)
T ss_pred CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEee--ccccCCCC
Confidence 34566666444445588876 2 4568999999999953 54 23322 2223 366665 999532
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
-+|.++.++++.+.+.. .. ...++. .+....++..++|+.+.+. + +.++.+++++++++.|.++
T Consensus 263 ~ig~v~~~~~i~~~~~~---~~--------~~~t~~-~~p~~~~aa~a~L~~i~~~-~---l~~~~~~~~~~~~~~L~~l 326 (401)
T TIGR01885 263 PVSAVLADDDVMLTIKP---GE--------HGSTYG-GNPLACAVAVAALEVLEEE-K---LAENAEKLGEIFRDQLKKL 326 (401)
T ss_pred CcEEEEEcHHHHhhccC---CC--------CCCCCC-CCHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHhc
Confidence 27888889888765432 00 122333 3445567778889988764 3 4467778889999999887
Q ss_pred C
Q psy8733 414 D 414 (621)
Q Consensus 414 ~ 414 (621)
+
T Consensus 327 ~ 327 (401)
T TIGR01885 327 P 327 (401)
T ss_pred c
Confidence 4
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-05 Score=87.34 Aligned_cols=105 Identities=13% Similarity=0.241 Sum_probs=67.8
Q ss_pred ccccCCCcEEEecccccCCCcc--------cccccceEEeccccccC-CCccEEEEEc-hhHHhhhCCCCCceeeccccc
Q psy8733 293 IPDSQGIPLVSDMSSNFLSRKF--------DVSKFGVIIAGAQKNIG-PAGITVVIVR-EDLLEYALPITPTVFHFKINA 362 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~pI--------Dv~~~gvl~asaqK~lG-P~Glg~livr-~~ll~~~~~~~P~~ld~~~~~ 362 (621)
+++++|+++|+|++.++++..+ ++...|+++++.||++. |-|-|+++.+ +++.+++... |.
T Consensus 230 la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~------y~--- 300 (444)
T TIGR03531 230 ICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKS------YP--- 300 (444)
T ss_pred HHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHh------cc---
Confidence 4568999999999999876432 12235688999999997 7776777674 5555554321 11
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+....+| .. .+..++..+-.. |++++.++..++++++.+.|.++
T Consensus 301 --g~~~~s~---~~-~~~~~ll~~G~~-g~~~li~~~~~~a~~l~~~L~~l 344 (444)
T TIGR03531 301 --GRASASP---SL-DVLITLLSLGSK-GYLELLKERKEMYKYLKELLQKL 344 (444)
T ss_pred --CCCCChH---HH-HHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222 22 222233333334 78889999999999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.5e-06 Score=88.34 Aligned_cols=225 Identities=16% Similarity=0.170 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEE
Q psy8733 96 KINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADY 175 (621)
Q Consensus 96 ~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~ 175 (621)
..+++-++.+++++|.+. ++.+ +|||. ||-+....+++++||+|+++.- -|.+.+.
T Consensus 25 ~~~~~fE~~~a~~~g~~~---~~~~-~sgt~-----Al~~al~~l~~~~gdeVi~p~~----t~~~~~~----------- 80 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVKY---AVAV-SSGTS-----ALHLALRALGLGPGDEVIVPAY----TFPATAS----------- 80 (363)
T ss_dssp HHHHHHHHHHHHHHTSSE---EEEE-SSHHH-----HHHHHHHHTTGGTTSEEEEESS----S-THHHH-----------
T ss_pred HHHHHHHHHHHHHhCCCe---EEEe-CChhH-----HHHHHHHhcCCCcCceEecCCC----cchHHHH-----------
Confidence 467778889999999763 5655 67898 5555556689999999999864 2322222
Q ss_pred EEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhccccccccc
Q psy8733 176 VVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPK 255 (621)
Q Consensus 176 v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~ 255 (621)
.....|.+.+..+.. + ..-.++++.+
T Consensus 81 ------------ai~~~G~~pv~~Di~----------~---------------------~~~~id~~~~----------- 106 (363)
T PF01041_consen 81 ------------AILWAGAEPVFVDID----------P---------------------ETLNIDPEAL----------- 106 (363)
T ss_dssp ------------HHHHTT-EEEEE-BE----------T---------------------TTSSB-HHHH-----------
T ss_pred ------------HHHHhccEEEEEecc----------C---------------------CcCCcCHHHH-----------
Confidence 223455544433311 0 0000112221
Q ss_pred CCCccCCCCccccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc--cccccc---eEEec
Q psy8733 256 VSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF--DVSKFG---VIIAG 325 (621)
Q Consensus 256 ~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI--Dv~~~g---vl~as 325 (621)
+-.+++++++|.++| ..|...|+ +++++|+++|-|++|++|+.-= .+-.+| ++.+.
T Consensus 107 -----------~~~i~~~t~ai~~~h---~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~ 172 (363)
T PF01041_consen 107 -----------EKAITPKTKAILVVH---LFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFH 172 (363)
T ss_dssp -----------HHHHHTTEEEEEEE----GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESS
T ss_pred -----------HHHhccCccEEEEec---CCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCC
Confidence 113678899999998 45777664 4678999999999999998432 223344 45555
Q ss_pred cccccC-CCccEEEEEchhH-HhhhCCCCC-cee--eccccc-c--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHH
Q psy8733 326 AQKNIG-PAGITVVIVREDL-LEYALPITP-TVF--HFKINA-D--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 397 (621)
Q Consensus 326 aqK~lG-P~Glg~livr~~l-l~~~~~~~P-~~l--d~~~~~-~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~ 397 (621)
..|.+. ..| |+|+.+++. .+++..... ... ...... . .+..+.-.+..+.. ++..|.+ ++.+.+
T Consensus 173 ~~K~i~~geG-G~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAi----gl~QL~~---L~~~~~ 244 (363)
T PF01041_consen 173 PTKIITTGEG-GAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAI----GLAQLKR---LDEIIA 244 (363)
T ss_dssp TTSSS-SSS--EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHH----HHHHHHT---HHHHHH
T ss_pred CCCCCcCCCC-eeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHH----HHHHHHH---hhhhHH
Confidence 669994 444 777776544 444432110 000 000000 0 01112222232222 2334443 577777
Q ss_pred HHHHHHHHHHHHHHccCCcccCc
Q psy8733 398 NSLQKSVLLYQEIDNSDKFYECP 420 (621)
Q Consensus 398 r~~~la~~L~e~L~~~~g~~~~~ 420 (621)
+-++.++.+.+.|..++++...+
T Consensus 245 ~R~~~a~~y~~~L~~~~~~~~~~ 267 (363)
T PF01041_consen 245 RRRENAQRYREALAGIPGIKPPP 267 (363)
T ss_dssp HHHHHHHHHHHHHTTGTTEEEEG
T ss_pred HHHHHHHHHHHHHhcCCCccccc
Confidence 88888999999999998765443
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.7e-05 Score=84.25 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=95.9
Q ss_pred CceEEEEecccccccccccc-----ccccCCC-----cEEEecccccCCCc-------ccccc-cceEEeccccccC-CC
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGI-----PLVSDMSSNFLSRK-------FDVSK-FGVIIAGAQKNIG-PA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~-----llvvDavSs~G~~p-------IDv~~-~gvl~asaqK~lG-P~ 333 (621)
.+-+|..+...|.+|..=|+ +++++|+ .++|||+=+-...| +|+.. .|-+..+.|||++ |.
T Consensus 228 ~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~ 307 (470)
T PLN02263 228 KPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPM 307 (470)
T ss_pred CcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCc
Confidence 35677888899999999886 3456665 99999984322232 23322 3479999999998 99
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|.|++++|+..++.+. ..+.|+.... ....+|=+......+-.+|+.+-.. |+.++.++..++++++.+.|.+.
T Consensus 308 ~cgvll~R~~~~~~~~-~~~~Yl~~~d----~ti~gSR~g~~al~lW~~L~~~G~~-G~~~~i~~~~~~A~~l~~~l~~~ 381 (470)
T PLN02263 308 PCGVQITRMEHINVLS-SNVEYLASRD----ATIMGSRNGHAPIFLWYTLNRKGYR-GFQKEVQKCLRNAHYLKDRLREA 381 (470)
T ss_pred CEEEEEEehhhHhhhc-cChHhhCCCC----CCcCCCCCcHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999987664432 2344543221 1222333333345566677777666 89999999999999999999988
Q ss_pred CCcc
Q psy8733 414 DKFY 417 (621)
Q Consensus 414 ~g~~ 417 (621)
+ +.
T Consensus 382 g-~~ 384 (470)
T PLN02263 382 G-IS 384 (470)
T ss_pred C-Ce
Confidence 5 54
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00018 Score=78.84 Aligned_cols=138 Identities=11% Similarity=0.165 Sum_probs=80.5
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEeccccc----CCCcccc---ccc-c--eEEeccccccCCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF----LSRKFDV---SKF-G--VIIAGAQKNIGPA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~----G~~pIDv---~~~-g--vl~asaqK~lGP~ 333 (621)
+++++|++|+-.|.||...+. +++++++++|.|-+-+- +..+..+ +.. + +++.|-=|.+|.+
T Consensus 175 ~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p 254 (409)
T PRK07590 175 EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFT 254 (409)
T ss_pred cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCc
Confidence 578999999888999999884 34578999999985431 1112222 222 2 5677889999988
Q ss_pred c--cEEEEEchhHHhhhCCCC-Ccee-eccccccCCCccCCchHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPIT-PTVF-HFKINADNNSVYNTPPTFVVHVIQRVFAW-IKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~-P~~l-d~~~~~~~~s~~~TP~v~~I~aL~~aL~~-i~~~gGl~~i~~r~~~la~~L~e 408 (621)
| +|+++..++++++..... .... .+. ......+++++.....++..+++- ..+ -++++.++.+++.+.+++
T Consensus 255 GlRiG~~i~~~~li~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~q~a~~~~l~~~~~~--~~~~~~~~~~~~r~~l~~ 330 (409)
T PRK07590 255 GTRCAYTVVPKELKGKTSDGEGVSLNSLWN--RRQSTKFNGVSYIVQRAAEAVYSPEGKA--QIKELIDYYMENAKIIRE 330 (409)
T ss_pred CceeEEEEcCHHHhhhccccchhhhHHHHH--HHHhhcccCcCHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHHHH
Confidence 8 799999988876321100 0000 000 001112233444444444444421 011 144556666777777888
Q ss_pred HHHcc
Q psy8733 409 EIDNS 413 (621)
Q Consensus 409 ~L~~~ 413 (621)
.|++.
T Consensus 331 ~L~~~ 335 (409)
T PRK07590 331 GLESA 335 (409)
T ss_pred HHHhc
Confidence 88775
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00051 Score=78.35 Aligned_cols=130 Identities=14% Similarity=0.095 Sum_probs=77.3
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCcc-ccc-----------ccc-eEEeccc
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKF-DVS-----------KFG-VIIAGAQ 327 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pI-Dv~-----------~~g-vl~asaq 327 (621)
+++++.+++-.|.||...+. +++++++++|+|-+=.-. ..+. .+. ... +.+.|-=
T Consensus 271 ~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~S 350 (534)
T PLN02231 271 TVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVS 350 (534)
T ss_pred CeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccC
Confidence 68889999888999999873 356789999999653321 1111 111 112 5566889
Q ss_pred ccc-CCCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-------HH---HhhCC
Q psy8733 328 KNI-GPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-------WI---KRQGG 391 (621)
Q Consensus 328 K~l-GP~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-------~i---~~~gG 391 (621)
|.+ |-+| +|.+++ .+++.+++.. .. +...++++..-.+...+++ .+ .++
T Consensus 351 K~~~g~pGlRiGy~~~~~~~~~l~~~l~k-------~~------~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~-- 415 (534)
T PLN02231 351 KGYYGECGKRGGYMEVTGFTSDVREQIYK-------VA------SVNLCSNISGQILASLVMSPPKPGDESYESYMAE-- 415 (534)
T ss_pred cccccCCccceEEEEEecCCHHHHHHHHH-------HH------hhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHH--
Confidence 976 7777 577765 5677665421 00 1111333333333333441 11 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 392 LAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 392 l~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.+++.+..+++++.+++.|++++|+.
T Consensus 416 ~~~i~~~~~~r~~~l~~~L~~~~gi~ 441 (534)
T PLN02231 416 KDGILSSLARRAKTLEDALNSLEGVT 441 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 34567778888899999998876554
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00018 Score=78.06 Aligned_cols=129 Identities=10% Similarity=0.016 Sum_probs=78.0
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---C-C----ccccccc-c--eEEeccccccC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---S-R----KFDVSKF-G--VIIAGAQKNIG 331 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~-~----pIDv~~~-g--vl~asaqK~lG 331 (621)
.++++++++|+-.|.||...+. +++++++++|+|-+=.-. . . -.+++.. + +++.|-=|.+|
T Consensus 163 ~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g 242 (388)
T PRK07366 163 LAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYN 242 (388)
T ss_pred cccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccC
Confidence 4568999999888999999884 345789999999653211 1 1 1122222 2 56788899999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|.++.++++++++..... ....++++... .++.+++..-.+ =++.+.++.+++.+.+.+.
T Consensus 243 ~~GlRiG~~v~~~~li~~l~~~~~-----------~~~~~~~~~~~-~~a~~~l~~~~~--~l~~~~~~~~~~r~~l~~~ 308 (388)
T PRK07366 243 MGGFRIGFAIGNAQLIQALRQVKA-----------VVDFNQYRGIL-NGAIAALTGPQA--TVQQTVQIFRQRRDAFINA 308 (388)
T ss_pred CcchhheehcCCHHHHHHHHHHHh-----------hcccCCCHHHH-HHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 777 7888888888776532110 11123322111 122222211111 2566677777777888888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|+++
T Consensus 309 L~~~ 312 (388)
T PRK07366 309 LHQI 312 (388)
T ss_pred HHHC
Confidence 8776
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00027 Score=76.75 Aligned_cols=125 Identities=17% Similarity=0.217 Sum_probs=77.8
Q ss_pred CCCCceEEEEecccccccccc-cc--------ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEF-NY--------IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~-p~--------i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+++++++|.+..+...+|+.. +. +++++|+++|+|-+++ +|. ..+..+.+ |++.+ -|.+| +
T Consensus 172 l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~--sK~l~-~ 248 (389)
T PRK01278 172 ITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAV--AKGIG-G 248 (389)
T ss_pred hCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEE--ehhcc-C
Confidence 345789999998877778443 31 4568999999999987 332 11111222 24444 48887 4
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+.. .....+++ .|.....+..++|+.+.+. ...++.+++.+++++.++
T Consensus 249 G~~ig~~~~~~~~~~~~~~-----------~~~~~t~~-~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~l~ 312 (389)
T PRK01278 249 GFPLGACLATEEAAKGMTP-----------GTHGSTYG-GNPLAMAVGNAVLDVILAP----GFLDNVQRMGLYLKQKLE 312 (389)
T ss_pred CcceEEEEEcHHHHhccCC-----------CCCCCCCC-ccHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHH
Confidence 5 8899999887654421 01123443 4456677777888888654 334455666666777666
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
.+
T Consensus 313 ~l 314 (389)
T PRK01278 313 GL 314 (389)
T ss_pred HH
Confidence 53
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00011 Score=80.36 Aligned_cols=74 Identities=15% Similarity=0.289 Sum_probs=54.7
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Ccccc---ccc-c--eEEeccccccCCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDV---SKF-G--VIIAGAQKNIGPA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv---~~~-g--vl~asaqK~lGP~ 333 (621)
+++++|++|+-.|.||...+. +++++++++|+|-+-+-.. .+..+ +.. + +.+.|-=|.+|.+
T Consensus 172 ~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~p 251 (402)
T TIGR03542 172 PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFT 251 (402)
T ss_pred CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCC
Confidence 578999999999999999883 2457899999999765321 22222 232 2 5577778999988
Q ss_pred c--cEEEEEchhHH
Q psy8733 334 G--ITVVIVREDLL 345 (621)
Q Consensus 334 G--lg~livr~~ll 345 (621)
| +|+++.+++++
T Consensus 252 GlRiG~~i~~~~l~ 265 (402)
T TIGR03542 252 GVRLGWTVVPKELT 265 (402)
T ss_pred CcceEEEEecHHHh
Confidence 8 79999988875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00023 Score=77.20 Aligned_cols=130 Identities=10% Similarity=0.096 Sum_probs=80.6
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---C-Ccccc---cc-c--ceEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---S-RKFDV---SK-F--GVIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~-~pIDv---~~-~--gvl~asaqK~lG 331 (621)
+.+++++|++|+-.|.||+..+. +++++++++|+|-+-.-. . .+..+ .+ . .+++.|-=|.+|
T Consensus 164 ~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g 243 (389)
T PRK08068 164 VAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFN 243 (389)
T ss_pred ccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccC
Confidence 34578999999767999999984 345789999999875321 1 22221 11 1 267778889999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~-gGl~~i~~r~~~la~~L~e 408 (621)
.+| +|+++.++++++++..... ....++++..... +..++.+. .-++.+.++.+++.+.+.+
T Consensus 244 ~~GlRiG~~~~~~~l~~~l~~~~~-----------~~~~~~~~~~q~~----~~~~l~~~~~~~~~~~~~~~~~r~~~~~ 308 (389)
T PRK08068 244 MAGWRVAFAVGNESVIEAINLLQD-----------HLFVSLFGAIQDA----AIEALLSDQSCVAELVARYESRRNAFIS 308 (389)
T ss_pred CccceeEeEecCHHHHHHHHHHHh-----------hccCCCChHHHHH----HHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 999 8999999988876532111 1112333322222 22333221 0145666777777778888
Q ss_pred HHHccC
Q psy8733 409 EIDNSD 414 (621)
Q Consensus 409 ~L~~~~ 414 (621)
.|++++
T Consensus 309 ~L~~~g 314 (389)
T PRK08068 309 ACREIG 314 (389)
T ss_pred HHHHCC
Confidence 887763
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00022 Score=77.31 Aligned_cols=237 Identities=14% Similarity=0.165 Sum_probs=141.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhC-CCCCCEEEEEcCCcchhhhHHHHHHh
Q psy8733 58 GPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLN-VPNNYKILFLQGGGTGMFAAVAMNLI 136 (621)
Q Consensus 58 GPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~-~p~~yeI~f~~gggT~~~~a~alNll 136 (621)
-|-..|+.+++++.+.+.. .||-++- -..+.++.+++..+ .+.+ .|+. ..|+++
T Consensus 32 nP~gp~~~~~~~~~~~~~~-----------~~rYPd~--~~~~l~~a~a~~~~~~~~~-~V~~-gnGsde---------- 86 (356)
T COG0079 32 NPYGPPPKVIEAIRAALDK-----------LNRYPDP--DYRELRAALAEYYGVVDPE-NVLV-GNGSDE---------- 86 (356)
T ss_pred CCCCCCHHHHHHHHHHHHh-----------hccCCCC--cHHHHHHHHHHHhCCCCcc-eEEE-cCChHH----------
Confidence 3455568889988887642 3444433 47788999999999 4443 5554 466777
Q ss_pred hhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCC
Q psy8733 137 SSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNR 216 (621)
Q Consensus 137 a~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~ 216 (621)
.++.++..+..+||++++..++.-... ..|+..|...+..+..
T Consensus 87 ---------------------~i~~l~~~~~~~gd~vl~~~Ptf~~Y~--~~a~~~g~~~~~v~~~-------------- 129 (356)
T COG0079 87 ---------------------LIELLVRAFVEPGDTVLIPEPTFSMYE--IAAQLAGAEVVKVPLK-------------- 129 (356)
T ss_pred ---------------------HHHHHHHHhhcCCCEEEEcCCChHHHH--HHHHhcCCeEEEeccc--------------
Confidence 233345566677777777666433332 2455666543322210
Q ss_pred CCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc----
Q psy8733 217 DPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY---- 292 (621)
Q Consensus 217 ~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~---- 292 (621)
. |.. +.+++ ...+.+++++|++|+=.|.||...+.
T Consensus 130 ----------------~-~~~--d~~~~----------------------~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~ 168 (356)
T COG0079 130 ----------------E-FRL--DLDAI----------------------LAAIRDKTKLVFLCNPNNPTGTLLPREELR 168 (356)
T ss_pred ----------------c-ccc--CHHHH----------------------HHhhhcCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 0 111 00110 01244579999999999999999884
Q ss_pred -ccc--cCCCcEEEecccc-cCCC-cccc-cccc--eEEeccccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccc
Q psy8733 293 -IPD--SQGIPLVSDMSSN-FLSR-KFDV-SKFG--VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINA 362 (621)
Q Consensus 293 -i~~--~~g~llvvDavSs-~G~~-pIDv-~~~g--vl~asaqK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~ 362 (621)
+.+ ..++++|||-+=. |... -+++ ...+ ++.=+-=|.+|-+| +|+++.++++++.+....+
T Consensus 169 ~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~--------- 239 (356)
T COG0079 169 ALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRP--------- 239 (356)
T ss_pred HHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcC---------
Confidence 211 1278999996421 1110 1111 1233 77778889999888 7999999999887654322
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.-|..+.++..++|+-- +. ++...++..+-.+++++.|+.++
T Consensus 240 -----p~~v~~~a~~aa~aal~~~-~~--~~~~~~~~~~~r~rl~~~l~~~~ 283 (356)
T COG0079 240 -----PFNVSSPALAAAIAALRDA-DY--LEESVERIREERERLYAALKALG 283 (356)
T ss_pred -----CCCCCHHHHHHHHHHcccH-HH--HHHHHHHHHHHHHHHHHHHHhCC
Confidence 2222333444444444332 22 56667777778889999999886
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0001 Score=87.99 Aligned_cols=140 Identities=11% Similarity=0.141 Sum_probs=97.4
Q ss_pred EEEEecccccccccccc--c---cccCCCcEEEecccccCCCcccccccc--eEEecccccc-----CCCccEEEEEchh
Q psy8733 276 YLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-----GPAGITVVIVRED 343 (621)
Q Consensus 276 ~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-----GP~Glg~livr~~ 343 (621)
...+..+.+..|.+.|+ + +++.|+++++++-...+....+..+|| +++.++|++. |-|+.|++.+|++
T Consensus 196 ~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~ 275 (939)
T TIGR00461 196 FGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDE 275 (939)
T ss_pred EEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHh
Confidence 46667788888999885 3 457899999999999999999999887 8888888764 3567999999999
Q ss_pred HHhhhCCCCC----------ce-eeccccccC-CCccCCchHHHHHHHHH---H--HHHHHhhCCHHHHHHHHHHHHHHH
Q psy8733 344 LLEYALPITP----------TV-FHFKINADN-NSVYNTPPTFVVHVIQR---V--FAWIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 344 ll~~~~~~~P----------~~-ld~~~~~~~-~s~~~TP~v~~I~aL~~---a--L~~i~~~gGl~~i~~r~~~la~~L 406 (621)
+..++....- .| +.+...... +..-.|.|+-...+|.+ + +.++-.+ |+.++.++...++.+|
T Consensus 276 l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~-GL~~iA~~~~~~a~~l 354 (939)
T TIGR00461 276 YNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPK-GLKNIARRIHSLTSIL 354 (939)
T ss_pred hHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHH
Confidence 8876643211 11 101110011 12225766554444433 4 4555556 8999999999999999
Q ss_pred HHHHHccCCcc
Q psy8733 407 YQEIDNSDKFY 417 (621)
Q Consensus 407 ~e~L~~~~g~~ 417 (621)
.+.|.+.+ +.
T Consensus 355 ~~~L~~~G-~~ 364 (939)
T TIGR00461 355 ANGLENDP-HE 364 (939)
T ss_pred HHHHHhCC-Cc
Confidence 99998854 53
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0002 Score=78.02 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=80.3
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccc---ccc-cc--eEEeccccccCCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFD---VSK-FG--VIIAGAQKNIGPA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pID---v~~-~g--vl~asaqK~lGP~ 333 (621)
+++++|++++-.|.||...+. +++++|+++|+|.+-.-.. .+.. +.. .+ +.+.|.=|.+|.+
T Consensus 163 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~p 242 (395)
T PRK08175 163 PKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMA 242 (395)
T ss_pred CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCc
Confidence 478999998778899998884 3457899999998653221 1111 222 23 5578889999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++.++++++++... .. ....+ ++.....++..+++...+ -++.+.++.+++.+++++.|+
T Consensus 243 GlRiG~~~~~~~l~~~~~~~-------~~----~~~~~-~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~L~ 308 (395)
T PRK08175 243 GWRIGFMVGNPELVSALARI-------KS----YHDYG-TFTPLQVAAIAALEGDQQ--CVRDIAEQYKRRRDVLVKGLH 308 (395)
T ss_pred chhheeeeCCHHHHHHHHHH-------Hh----hcccC-CCcHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 8 69999998888765321 00 00112 222233333333432111 256667777788888888888
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
..+
T Consensus 309 ~~~ 311 (395)
T PRK08175 309 EAG 311 (395)
T ss_pred HcC
Confidence 763
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00061 Score=72.76 Aligned_cols=124 Identities=12% Similarity=0.131 Sum_probs=77.1
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--Cccc-ccccc--eEEeccccccCCCc--cEEEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFD-VSKFG--VIIAGAQKNIGPAG--ITVVIV 340 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pID-v~~~g--vl~asaqK~lGP~G--lg~liv 340 (621)
+++++.+|+-.|.||...+. +. ++++++|+|-+-.-.. ..++ +...+ +++.|-=|.+|.+| +|+++.
T Consensus 138 ~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~ 216 (335)
T PRK14808 138 EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVS 216 (335)
T ss_pred CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEe
Confidence 46899999999999999884 23 4689999998743221 1122 22343 77788899999888 699999
Q ss_pred chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 341 REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 341 r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++++.+++.... ..++ .+.....++..+++... . +++..++.++..+++++.|++.+
T Consensus 217 ~~~~~~~l~~~~-------------~~~~-~~~~~q~a~~~~l~~~~-~--~~~~~~~~~~~r~~l~~~L~~~g 273 (335)
T PRK14808 217 SEKFIDAYNRVR-------------LPFN-VSYVSQMFAKVALDHRE-I--FEERTKFIVEERERMKSALREMG 273 (335)
T ss_pred CHHHHHHHHHhc-------------CCCC-CCHHHHHHHHHHHhCHH-H--HHHHHHHHHHHHHHHHHHHHHCC
Confidence 998887653211 0122 23333444455554321 1 23333444455567778777763
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00047 Score=73.40 Aligned_cols=124 Identities=16% Similarity=0.050 Sum_probs=77.4
Q ss_pred CceEEEEecccccccccccc-----c---cccCCCcEEEecccccCCC---cccccccc--eEEeccccccCCCc--cEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----I---PDSQGIPLVSDMSSNFLSR---KFDVSKFG--VIIAGAQKNIGPAG--ITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i---~~~~g~llvvDavSs~G~~---pIDv~~~g--vl~asaqK~lGP~G--lg~ 337 (621)
+++++.+|.-.|.||...+. + ++++++++|+|-+-.-... ...+...+ +++.|-=|.+|.+| +|+
T Consensus 124 ~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~ 203 (330)
T PRK05664 124 SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGARLGF 203 (330)
T ss_pred CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCcceEE
Confidence 56777777777999999884 2 2467899999976432221 12233333 78889999999888 899
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.++++.+++.... . ..+.+....+++..+|+... -.+.+.++.++..+.+.+.|++.
T Consensus 204 ~v~~~~l~~~~~~~~-------------~-~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~~~~r~~l~~~L~~~ 262 (330)
T PRK05664 204 VLAEPALLRALAELL-------------G-PWTVSGPTRWLAQAALADTP---WQRRQRERLLAASQRLAALLRRH 262 (330)
T ss_pred EEeCHHHHHHHHHhc-------------C-CCCCCHHHHHHHHHHHhChH---HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999988887653211 0 11122233344444443211 13455666666777888888775
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.7e-05 Score=83.40 Aligned_cols=127 Identities=14% Similarity=0.148 Sum_probs=80.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++-.|.+|...|+ +++++|+++|+|.+.+.+ ..|++. ..|+++.|.+|++| +.. -|+++
T Consensus 133 i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~-gaDivv~S~tK~l~g~~d~~gG~v~ 211 (364)
T PRK07269 133 IEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIEL-GADIVLHSATKYLSGHNDVLAGVVV 211 (364)
T ss_pred cCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhh-CCcEEEecCceeccCCCcccceEEE
Confidence 56789999999999999998886 456889999999985433 344321 12499999999996 443 35556
Q ss_pred Ec-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 340 VR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 340 vr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
.+ +++.+++.. +.. ..+ .+++.+..+.+...|+ -++.+.+++++.+..+.+.|++.++
T Consensus 212 ~~~~~l~~~~~~-------~~~--~~G---~~~s~~~a~l~~~~L~------tL~~r~~~~~~na~~~a~~L~~~p~ 270 (364)
T PRK07269 212 TNDLELYEKLFY-------NLN--TTG---AVLSPFDSYLLMRGLK------TLSLRMERSTANAQEVVAFLKKSPA 270 (364)
T ss_pred eCcHHHHHHHHH-------HHH--HhC---CCCCHHHHHHHHcCCC------cHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 64 445554421 000 001 1222222222112221 3677778888888889899988764
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00052 Score=74.31 Aligned_cols=125 Identities=18% Similarity=0.281 Sum_probs=78.3
Q ss_pred CCCCceEEEEeccccccccc-ccc--------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVE-FNY--------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~-~p~--------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+.+++++|.+..+.+.+|+. .+. +++++|+++|+|-+++ +|.. ....+.+ +++.+| |.+| +
T Consensus 179 i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~s--K~~~-~ 255 (396)
T PRK02627 179 ITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLA--KGLG-G 255 (396)
T ss_pred cCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEc--chhh-C
Confidence 45678999998887777843 331 4568999999999987 4321 1122222 356555 9998 4
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+... ....+++ .+....++..++|+.+.+. + +.++.+++.+.+++.|.
T Consensus 256 G~rig~~~~~~~~~~~~~~~-----------~~~~t~~-~~~~~~~aa~~~l~~~~~~-~---~~~~~~~~~~~~~~~l~ 319 (396)
T PRK02627 256 GVPIGAVLAKEKVADVFTPG-----------DHGSTFG-GNPLACAAALAVIEIIEEE-G---LLENAAEVGEYLRAKLR 319 (396)
T ss_pred CcccEEEEEcHHHHhccCCC-----------CCCCCCC-CCHHHHHHHHHHHHHHhhc-c---HHHHHHHHHHHHHHHHH
Confidence 5 89999998877644210 1123343 3445667777788877654 3 34556666666766665
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 320 ~~ 321 (396)
T PRK02627 320 EL 321 (396)
T ss_pred HH
Confidence 53
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-06 Score=93.23 Aligned_cols=98 Identities=23% Similarity=0.319 Sum_probs=82.6
Q ss_pred hhhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC-CC-ceeeeeec---ccC-CCccCCCchhHHHHHHHHHHHHHh
Q psy8733 446 AFFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI-TP-TVFHFKIN---ADN-NSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~-~p-~~~~y~~~---~~~-~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.+..|+++.|.||+|| |.|++++.+|++++++.... .| .+||++.+ .++ ++++.|||+--||-+...|+-|++
T Consensus 181 ~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~ 260 (383)
T COG0075 181 EWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILE 260 (383)
T ss_pred hcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5668999999999998 99999999999999885432 34 56665443 333 899999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccC
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSD 544 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~ 544 (621)
.| +++.-+|-++.++.+.+.+++-.
T Consensus 261 EG-le~r~~RH~~~~~a~r~~~~alG 285 (383)
T COG0075 261 EG-LEARIARHRRLAEALRAGLEALG 285 (383)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 98 99999999999998888887643
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.9e-05 Score=80.57 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=79.0
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC-----Cccc-------c--cccc--eEEecc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS-----RKFD-------V--SKFG--VIIAGA 326 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~-----~pID-------v--~~~g--vl~asa 326 (621)
.+++++|++++-.|+||...+. +++++++++|+|-+=.-.. .+.. + +..+ +++.|-
T Consensus 163 ~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 242 (393)
T TIGR03538 163 WRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSL 242 (393)
T ss_pred hhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecc
Confidence 3578999999999999999883 3457899999998754221 1111 1 1233 788899
Q ss_pred ccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 327 QKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 327 qK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
=|.+|.+| +|+++.++++++++.. +.. ....+++.....++.+++.. +. -++...++.+++.+
T Consensus 243 SK~~~~~GlRvG~~i~~~~l~~~~~~-------~~~-----~~~~~~~~~~q~~~~~~l~~--~~-~~~~~~~~~~~~~~ 307 (393)
T TIGR03538 243 SKRSNLPGLRSGFVAGDAEILKAFLR-------YRT-----YHGCAMPIPTQLASIAAWND--EQ-HVRENRALYREKFA 307 (393)
T ss_pred hhhcCCcccceEEEecCHHHHHHHHH-------HHH-----hhccCcCHHHHHHHHHHhcC--hH-HHHHHHHHHHHHHH
Confidence 99988777 7888888888766531 110 01112233333333333321 11 35666677777777
Q ss_pred HHHHHHHc
Q psy8733 405 LLYQEIDN 412 (621)
Q Consensus 405 ~L~e~L~~ 412 (621)
.+.+.|..
T Consensus 308 ~~~~~L~~ 315 (393)
T TIGR03538 308 AVLEILGQ 315 (393)
T ss_pred HHHHHHHh
Confidence 78787765
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0011 Score=72.35 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=77.6
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc-c---ccccc-c--eEEeccccccCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK-F---DVSKF-G--VIIAGAQKNIGP 332 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p-I---Dv~~~-g--vl~asaqK~lGP 332 (621)
.++++++.+|+-.|+||...+. +++++++++|+|-+-+-.. .+ . .++.. + +.+.|-=|.+|.
T Consensus 173 ~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 252 (403)
T PRK08636 173 SPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNM 252 (403)
T ss_pred cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCC
Confidence 3578999999768999999884 3467899999998744221 11 1 22222 3 346789999997
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++.++++++++... .. ....+++....+ ++..+++.-.+ -++.+.+..+++.+.+.+.|
T Consensus 253 ~GlRiG~iv~~~~li~~~~~~-------~~----~~~~~~~~~~q~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L 318 (403)
T PRK08636 253 AGWRVGFVVGNKKLVGALKKI-------KS----WLDYGMFTPIQV-AATIALDGDQS--CVEEIRETYRKRRDVLIESF 318 (403)
T ss_pred ccceeeeeeCCHHHHHHHHHH-------HH----HhcccCChHHHH-HHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHH
Confidence 77 78888888887655320 00 011223222222 22233321111 25566666777777788888
Q ss_pred Hcc
Q psy8733 411 DNS 413 (621)
Q Consensus 411 ~~~ 413 (621)
...
T Consensus 319 ~~~ 321 (403)
T PRK08636 319 ANA 321 (403)
T ss_pred HHC
Confidence 765
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0009 Score=71.67 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=76.7
Q ss_pred CceEEEEecccccccccccc-----cc---ccCCCcEEEecccccCCC--cc-cccccc--eEEeccccccCCCc--cEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IP---DSQGIPLVSDMSSNFLSR--KF-DVSKFG--VIIAGAQKNIGPAG--ITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~---~~~g~llvvDavSs~G~~--pI-Dv~~~g--vl~asaqK~lGP~G--lg~ 337 (621)
+++.+.+|+-.|.||...+. +. +.++.++|+|=+-.-... ++ .+.+.+ +++.|-=|.+|.+| +|+
T Consensus 130 ~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy 209 (339)
T PRK06959 130 ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGVRAGF 209 (339)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcchheEE
Confidence 34678888888999999884 22 246788888976432221 11 121223 77888899999888 699
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.++++++++....+ .++ .+.....++.++|+ +..=.+.+.++.++..+++.+.|++++
T Consensus 210 ~v~~~~li~~l~~~~~-------------~~~-vs~~~q~a~~~~L~---~~~~~~~~~~~~~~~r~~l~~~L~~~g 269 (339)
T PRK06959 210 VLAAPALLAALRDALG-------------AWT-VSGPARHAVRAAFA---DAAWQAAMRERLAADGARLAALLRAHG 269 (339)
T ss_pred EecCHHHHHHHHHhcC-------------CCC-CcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999998876643111 111 22333344444442 210134556667777778888888763
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0028 Score=69.41 Aligned_cols=126 Identities=11% Similarity=0.154 Sum_probs=84.7
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------ccc--cccceEEeccccccCCCccEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDV--SKFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv--~~~gvl~asaqK~lGP~Glg~ 337 (621)
.++|..-.+=...|..-|+ +++++++.++||=+-++|..= +.+ ++.+++..+--|.||-.| |+
T Consensus 172 ~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G-g~ 250 (388)
T COG0156 172 RKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG-GY 250 (388)
T ss_pred ceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC-ce
Confidence 4556655555667888886 456899999999988887643 122 233588899999999554 56
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+..+..+.+.+....+. ..| .+.|.....+..++|+.+.+. ....++.++++..++..+...+
T Consensus 251 v~g~~~~~d~L~~~ar~-----------~ifStalpP~~aaa~~~al~~l~~~---~~~r~~L~~~~~~~~~~~~~~~ 314 (388)
T COG0156 251 IAGSAALIDYLRNRARP-----------FIFSTALPPAVAAAALAALRILEEG---PERRERLQELAAFFRSLLKALG 314 (388)
T ss_pred eeCcHHHHHHHHHhCCc-----------eeccCCCCHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHhcC
Confidence 66666666554332222 222 244556677888999999864 5667778888888886666544
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00027 Score=75.46 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=56.4
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--Cccc-ccccc--eEEeccccccCCCc--cEEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFD-VSKFG--VIIAGAQKNIGPAG--ITVVI 339 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pID-v~~~g--vl~asaqK~lGP~G--lg~li 339 (621)
++++++.+++-.|.||...+. +. ++++++|+|.+-.-.. ..+. ++..+ +++.|-=|.+|.+| +|+++
T Consensus 139 ~~~~~v~~~~P~NPtG~~~~~~~l~~i~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv 217 (337)
T PRK03967 139 KNASAVFICSPNNPTGNLQPEEEILKVL-ETGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAI 217 (337)
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHH-hcCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeee
Confidence 467889999999999999884 33 4689999999764221 1111 12223 77789999999888 89999
Q ss_pred EchhHHhhhC
Q psy8733 340 VREDLLEYAL 349 (621)
Q Consensus 340 vr~~ll~~~~ 349 (621)
.++++.+++.
T Consensus 218 ~~~~~i~~~~ 227 (337)
T PRK03967 218 ANEEIIDALY 227 (337)
T ss_pred cCHHHHHHHH
Confidence 9988887653
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00075 Score=71.82 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=56.9
Q ss_pred CCceEEEEecccccccccccc-----c---cccCCCcEEEecccccCCC----c-ccc-cccc--eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----I---PDSQGIPLVSDMSSNFLSR----K-FDV-SKFG--VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i---~~~~g~llvvDavSs~G~~----p-IDv-~~~g--vl~asaqK~lGP~G- 334 (621)
.++++|++|+-.|+||...+. + ++++++++|+|-+-.-... + ... +..+ +++.|-=|.+|.+|
T Consensus 121 ~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~Gl 200 (332)
T PRK06425 121 YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSL 200 (332)
T ss_pred cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCchh
Confidence 378899999999999999884 2 3467999999986442211 1 111 2334 66678899999889
Q ss_pred -cEEEEEchhHHhhhC
Q psy8733 335 -ITVVIVREDLLEYAL 349 (621)
Q Consensus 335 -lg~livr~~ll~~~~ 349 (621)
+|+++..+++++++.
T Consensus 201 RiGy~v~~~~li~~l~ 216 (332)
T PRK06425 201 RIGYIATDDYNMKISR 216 (332)
T ss_pred hheeeecCHHHHHHHH
Confidence 699999999887664
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00043 Score=76.31 Aligned_cols=126 Identities=11% Similarity=0.076 Sum_probs=76.3
Q ss_pred CCCceEEEEe-cccccccccccc--------ccccC-CCcEEEecccccCC-----Ccccccccc-eEEeccccccCCCc
Q psy8733 271 DPEASYLYYC-DNETVDGVEFNY--------IPDSQ-GIPLVSDMSSNFLS-----RKFDVSKFG-VIIAGAQKNIGPAG 334 (621)
Q Consensus 271 ~~~t~~V~~t-hnET~tGv~~p~--------i~~~~-g~llvvDavSs~G~-----~pIDv~~~g-vl~asaqK~lGP~G 334 (621)
++++++++++ .-.|+||...+. +++++ ++++|+|-+-+-.. .++..+.-. +++.|-=|.+| +|
T Consensus 209 ~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~G 287 (431)
T PRK15481 209 AQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALG-PD 287 (431)
T ss_pred hcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccC-CC
Confidence 3467888887 778999999884 34556 89999996533111 112211112 77888899999 68
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHHHH
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG----LAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG----l~~i~~r~~~la~~L~e 408 (621)
+|+++..+++.+++.... ..... ..+.....++..+| .+ |. ++.+.+..+++.+.+.+
T Consensus 288 lRiG~~i~~~~~~~~~~~~~-----------~~~~~-~~s~~~q~a~~~~l---~~-~~~~~~l~~~~~~~~~~r~~~~~ 351 (431)
T PRK15481 288 LRLAFVASDSATSARLRLRL-----------NSGTQ-WVSHLLQDLVYACL---TD-PEYQARLAQARLFYAQRRQKLAR 351 (431)
T ss_pred ceeEEEeCCHHHHHHHHHHH-----------hcccc-CCCHHHHHHHHHHH---hC-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888776552100 00111 23334444444443 32 22 45666777777778888
Q ss_pred HHHcc
Q psy8733 409 EIDNS 413 (621)
Q Consensus 409 ~L~~~ 413 (621)
.|++.
T Consensus 352 ~L~~~ 356 (431)
T PRK15481 352 ALQQY 356 (431)
T ss_pred HHHHc
Confidence 88775
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-05 Score=83.34 Aligned_cols=267 Identities=14% Similarity=0.148 Sum_probs=160.1
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc---cHHHHHHHH-HHHHHHHHHhCCCCCCEEEEEcCCcc
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR---SADYTKINN-DTQAALRELLNVPNNYKILFLQGGGT 125 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr---s~~f~~i~~-~ar~~La~Ll~~p~~yeI~f~~gggT 125 (621)
+....+.|.=--.++.|++++...+++-...|. .++| +-++.+.+| .+.++.++|||+.-. +| -+-||+
T Consensus 26 ~~~ieLIASEN~~S~aV~~A~gS~ltnKYAEGy----PgkRyYgGce~VD~vE~laierak~LFga~~a-nV--QPhSGs 98 (413)
T COG0112 26 REHIELIASENFTSPAVMEAQGSDLTNKYAEGY----PGKRYYGGCEYVDEVEELAIERAKKLFGAEYA-NV--QPHSGS 98 (413)
T ss_pred hhceeeeeccccCCHHHHHHHhhhhhhccccCC----CCccccCCCeeHHHHHHHHHHHHHHHhCCCcc-cc--CCCCch
Confidence 356777888788899999999999988555554 3444 445666554 467899999999753 33 355677
Q ss_pred hhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 126 GMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 126 ~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
. .|+-.+..=+++||.|+-+. | ..|.|..+-..-.++.+|. ...+
T Consensus 99 ~------AN~av~~All~pGDtimgm~-------------l-~~GGHltHg~~v~~sG~~~----------~~v~----- 143 (413)
T COG0112 99 Q------ANQAVYLALLQPGDTIMGLD-------------L-SHGGHLTHGSPVNFSGKLF----------NVVS----- 143 (413)
T ss_pred H------HHHHHHHHHcCCCCeEeccc-------------C-CCCCcccCCCCCCccceeE----------EeEe-----
Confidence 6 35544433456666665432 1 2232222211111111110 0000
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
.+++. +... +|-|+ .+......++|++..-..-.+
T Consensus 144 ------Y~vd~----------et~~--------IDyD~---------------------~~k~a~e~kPK~ii~G~SaY~ 178 (413)
T COG0112 144 ------YGVDP----------ETGL--------IDYDE---------------------VEKLAKEVKPKLIIAGGSAYS 178 (413)
T ss_pred ------ccccc----------ccCc--------cCHHH---------------------HHHHHHHhCCCEEEECccccc
Confidence 00000 0000 11111 111223446676654432222
Q ss_pred ccccccc-----ccccCCCcEEEeccccc-----CCCcccccccceEEecccccc-CCCccEEEEEchhHHhhhCC-CCC
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNF-----LSRKFDVSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALP-ITP 353 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~-----G~~pIDv~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~-~~P 353 (621)
-..|. |+++.|+.+++||+--. |..|=++...|++.++.||.| ||.|=-++.-++++.+++.. ..|
T Consensus 179 --r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPrGG~Il~~~eel~kkin~aVFP 256 (413)
T COG0112 179 --RPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRGGIILTNDEELAKKINSAVFP 256 (413)
T ss_pred --cccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCCceEEEeccHHHHHHhhhhcCC
Confidence 22232 56688999999997643 444555666789999999999 89985444444577666543 122
Q ss_pred ceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 354 TVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 354 ~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
..-+-|-...|+|.+-|++...+- +.+...++..+.++.|-+.|.+.| +.+.
T Consensus 257 ------------g~qggpl~HviAakaVa~~Eal~p-~fk~Ya~qVv~NAkaLAe~l~~~G-~~vv 308 (413)
T COG0112 257 ------------GLQGGPLMHVIAAKAVAFKEALEP-EFKEYAKQVVKNAKALAEALKERG-FKVV 308 (413)
T ss_pred ------------ccCCChHHHHHHHHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHcC-CeEe
Confidence 334567788899999999999887 788999999999999999998864 6544
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.1e-05 Score=82.07 Aligned_cols=126 Identities=9% Similarity=0.114 Sum_probs=82.4
Q ss_pred CCceEEEEecccccccccccc-----cccc------CCCcEEEeccc--ccCCCcccccccceEEeccccccC-CCc--c
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDS------QGIPLVSDMSS--NFLSRKFDVSKFGVIIAGAQKNIG-PAG--I 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~------~g~llvvDavS--s~G~~pIDv~~~gvl~asaqK~lG-P~G--l 335 (621)
+++++|+++.-.|.||...|. +++. +++++|+|-+= -+...|++.. .++++.|.-|.+| .+| +
T Consensus 173 ~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g-~divv~S~SK~~gG~~glr~ 251 (427)
T PRK07049 173 GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHG-ADLSVYSLTKYVGGHSDLVA 251 (427)
T ss_pred CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccC-CCEEEEcCceeecCCCCcEE
Confidence 579999999999999999885 3333 68999999872 2223444332 2588889999997 666 6
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
|+++.++++.+++... . ...-.+.+.+..+.+..+|+. +..+.+++.+.+..+.+.|++.++
T Consensus 252 G~vv~~~~l~~~l~~~-------~-----~~~g~~ls~~~a~l~~r~L~t------l~~R~~~~~~~a~~la~~L~~~p~ 313 (427)
T PRK07049 252 GAVLGRKALIRQVRAL-------R-----SAIGTQLDPHSCWMLGRSLET------LVLRMERANRNARAVAEFLRDHPK 313 (427)
T ss_pred EEEECCHHHHHHHHHH-------H-----HhcCCCCCHHHHHHHHcCCCh------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7777777776655310 0 011123444444444444432 445556667888899999998875
Q ss_pred c
Q psy8733 416 F 416 (621)
Q Consensus 416 ~ 416 (621)
+
T Consensus 314 V 314 (427)
T PRK07049 314 V 314 (427)
T ss_pred c
Confidence 4
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00053 Score=76.99 Aligned_cols=124 Identities=13% Similarity=0.236 Sum_probs=80.2
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC----Cccccccc--ceEEeccccccCC--C
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS----RKFDVSKF--GVIIAGAQKNIGP--A 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~----~pIDv~~~--gvl~asaqK~lGP--~ 333 (621)
+++++|.+....+.+|+..| + +++++|+++|+|-+++ +|. ...+.... |+++.| |.+|- -
T Consensus 223 ~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~ 300 (474)
T PLN02624 223 DRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILG--KALGGGVI 300 (474)
T ss_pred CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEec--ccccCCCC
Confidence 45777888666677798887 2 4568999999999987 431 12222222 366665 99862 3
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
-+|.++.++++.+.+.+ . ...++++. |.....+..++|+.+.+. + +.++..++.+++++.|+++
T Consensus 301 pigav~~~~~i~~~~~~---~--------~~~~T~~g-~pl~~aaa~aaLe~l~~~-~---l~~~~~~~~~~l~~~L~~l 364 (474)
T PLN02624 301 PVSAVLADKDVMLCIKP---G--------EHGSTFGG-NPLASAVAMAALQVVQDE-K---LAERSAKLGQELRDQLQKI 364 (474)
T ss_pred cceeeeecHHHHhHhcc---C--------CcCCCCCC-CHHHHHHHHHHHHHHHhc-h---HHHHHHHHHHHHHHHHHHH
Confidence 47888888887654422 0 12345543 445567777788888764 3 4456667777788877764
|
|
| >KOG3846|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.5e-05 Score=79.37 Aligned_cols=282 Identities=14% Similarity=0.205 Sum_probs=179.1
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccH--HHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSA--DYTKINNDTQAALRELLNVPNNYKILFLQGGGTGM 127 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~--~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~ 127 (621)
+.+|+-+-.-..+|..+.+.|.+++..|...+.- +|.+. .+..+=+.+-..++.+.|+.++ ||..+ ++=|.
T Consensus 67 ~~iYlcGNSLGLmPK~t~~~~~~eLDkWak~av~----gH~~GkvPW~~~De~il~l~~~iVGA~e~-Evavm-NsLTv- 139 (465)
T KOG3846|consen 67 PVIYLCGNSLGLMPKSTRNSINAELDKWAKCAVE----GHFKGKVPWVSIDEPILPLLAPIVGAQEN-EVAVM-NSLTV- 139 (465)
T ss_pred CeEEEeccccccCchhhHhHHHHHHHHHHhhhhh----cccccccceeecchhhhhhhhhhccCCch-hhhhH-hhhhh-
Confidence 4578888888899999999999999999876543 34321 2444556677889999999876 78876 44444
Q ss_pred hhHHHHHHhhhcc--CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 128 FAAVAMNLISSSM--NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 128 ~~a~alNlla~~~--~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
-+|.+-.+. .-+.-.+|++-.+ +| .+.+|. ....++-+|.... -
T Consensus 140 ----Nlh~Ll~sFyKPTekR~KILlE~k----aF-----------------PSDhYA--iesQ~~lhG~~~e-~------ 185 (465)
T KOG3846|consen 140 ----NLHSLLISFYKPTEKRFKILLEKK----AF-----------------PSDHYA--IESQCKLHGISPE-N------ 185 (465)
T ss_pred ----HHHHHHHHhcCCcchhhhhhhccC----CC-----------------CchHHH--HHhhhhhcCCChH-H------
Confidence 333322111 1223333333222 11 011121 1123344453200 0
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCc-cccCC-CCCceEEEEeccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQ-STWNR-DPEASYLYYCDNE 283 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~-~~l~i-~~~t~~V~~thnE 283 (621)
+.| ...| ++|. .+....|+ +.+.. .+...+|+++.+.
T Consensus 186 sm~-~ieP-------------------------------REGE---------etlRteDILd~IEkngDeiA~v~fSGvq 224 (465)
T KOG3846|consen 186 SMI-QIEP-------------------------------REGE---------ETLRTEDILDTIEKNGDEIALVCFSGVQ 224 (465)
T ss_pred heE-Eecc-------------------------------cccc---------cchhHHHHHHHHHhcCCeEEEEEeecce
Confidence 000 0000 0000 00011111 11112 2457888999999
Q ss_pred ccccccccc--cc---ccCCCcEEEecccccCCCcccccccc--eEEecccccc--CCCccEEEEEchhHHhhhCCCCCc
Q psy8733 284 TVDGVEFNY--IP---DSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI--GPAGITVVIVREDLLEYALPITPT 354 (621)
Q Consensus 284 T~tGv~~p~--i~---~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l--GP~Glg~livr~~ll~~~~~~~P~ 354 (621)
.-||..+++ |. +.+|+++=-|-+.++|..|+-+.+|| |.+-++.|.+ |+-|+|.++|.++......|..-.
T Consensus 225 yYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~G 304 (465)
T KOG3846|consen 225 YYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAG 304 (465)
T ss_pred eecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeeehhhhcchhhHHhh
Confidence 999999996 32 46799999999999999999999998 9999999998 799999999998876654442211
Q ss_pred ee----------ecccccc---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 355 VF----------HFKINAD---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 355 ~l----------d~~~~~~---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++ |-..... -+.+...||+..+.+|..+|+.+.+. .++++.+|..-++.++..-++.+-
T Consensus 305 Wwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~-~~~~lRkrS~lLTgYleyL~k~~~ 376 (465)
T KOG3846|consen 305 WWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQF-NINELRKRSLLLTGYLEYLLKASK 376 (465)
T ss_pred hccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHh-hHHHHhhhhhhHHhHHHHHHHHhc
Confidence 11 1000011 13455689999999999999999988 799999999999999988887764
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0012 Score=73.97 Aligned_cols=120 Identities=10% Similarity=0.077 Sum_probs=76.6
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------ccc-cccceEEeccccccCCCccEEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDV-SKFGVIIAGAQKNIGPAGITVV 338 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv-~~~gvl~asaqK~lGP~Glg~l 338 (621)
.++|.+-..-...|...|+ +++++|+++++|=+.++|..- +++ .+.++++++--|.+|-.| |++
T Consensus 250 ~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G-Gfi 328 (476)
T PLN02955 250 RKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG-GFI 328 (476)
T ss_pred ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC-cee
Confidence 4555555556667877775 456789999999888876421 222 234588899999998554 668
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccCC-chHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYNT-PPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~T-P~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
..++++.+.+....+ ...|.| .|...+.+..++++.+.+. +...++.+++.+++++
T Consensus 329 ~gs~~~~~~l~~~~~-----------~~ifStalpp~~aaa~laal~l~~~~---~~~r~~L~~n~~~fr~ 385 (476)
T PLN02955 329 ACSKKWKQLIQSRGR-----------SFIFSTAIPVPMAAAAYAAVVVARKE---KWRRKAIWERVKEFKA 385 (476)
T ss_pred ecHHHHHHHHHHhCC-----------CCeecccccHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 888877766543222 122333 3445566677788877653 2355666666666665
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00012 Score=81.35 Aligned_cols=69 Identities=13% Similarity=0.278 Sum_probs=53.0
Q ss_pred CCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc--ccc--eEEecccccc-C-CCccEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS--KFG--VIIAGAQKNI-G-PAGITV 337 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~--~~g--vl~asaqK~l-G-P~Glg~ 337 (621)
.++++|++|++.+-.++++-+.|+ +++++|+++++|++-+ .|+-.+ +.| +++-|.-|++ | .-++|.
T Consensus 143 ~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~---tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G 219 (432)
T PRK06702 143 LANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLA---TPYLCQAFEHGANIIVHSTTKYIDGHASSLGG 219 (432)
T ss_pred hCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCC---chhhCChhhcCCCEEEEccccccCCCcceece
Confidence 367889999998888888888886 4578999999999843 344444 455 9999999999 5 445666
Q ss_pred EEE
Q psy8733 338 VIV 340 (621)
Q Consensus 338 liv 340 (621)
+++
T Consensus 220 ~v~ 222 (432)
T PRK06702 220 IVI 222 (432)
T ss_pred EEE
Confidence 665
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00059 Score=73.29 Aligned_cols=127 Identities=10% Similarity=0.039 Sum_probs=79.1
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC---C--c-cc-ccccc--eEEeccccccCCCc--c
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS---R--K-FD-VSKFG--VIIAGAQKNIGPAG--I 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~---~--p-ID-v~~~g--vl~asaqK~lGP~G--l 335 (621)
++++++.+|+-.|.||...+. +.+.+++ +|+|-+-.-.. . + +. ++..+ +++.|-=|.+|.+| +
T Consensus 147 ~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRi 225 (360)
T PRK07392 147 TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRL 225 (360)
T ss_pred cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchhe
Confidence 467899999999999998884 3455664 66687643211 1 1 11 22333 77788899999777 7
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG-LAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG-l~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|+++..+++++++... ....+++.....++..+|+ +. . .+.+.++.++..+.+.+.|++++
T Consensus 226 G~~v~~~~~~~~~~~~--------------~~~~~~s~~~q~~~~~~l~---~~-~~~~~~~~~~~~~r~~l~~~L~~~~ 287 (360)
T PRK07392 226 GYAIAHPDRLQRWQQW--------------RDPWPVNGLAAAAAIAALA---DR-DFQQQTWAWLPPAREALFQGLASLP 287 (360)
T ss_pred eeeeCCHHHHHHHHhh--------------CCCCCCCHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8898888887654210 0123444555555555543 21 2 23344556666778888888876
Q ss_pred Ccc
Q psy8733 415 KFY 417 (621)
Q Consensus 415 g~~ 417 (621)
|+.
T Consensus 288 ~~~ 290 (360)
T PRK07392 288 GLT 290 (360)
T ss_pred CcE
Confidence 554
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.001 Score=71.03 Aligned_cols=131 Identities=10% Similarity=0.064 Sum_probs=80.9
Q ss_pred ceEEEEecccccccccccc--------ccccCCCcEEEeccc---ccCCCccccccc----ceEEeccccccCCCccEEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSS---NFLSRKFDVSKF----GVIIAGAQKNIGPAGITVV 338 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavS---s~G~~pIDv~~~----gvl~asaqK~lGP~Glg~l 338 (621)
..++..++. |..|++.|. +++++|.++++|++- ++-+.-++...| |.+++|.-|++|.++=++|
T Consensus 132 ~~~~~e~~~-te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv 210 (342)
T COG2008 132 PLAVLENTA-TEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIV 210 (342)
T ss_pred ceEEEeecc-CCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEE
Confidence 344444332 355999985 457899999999842 111122444444 5999999999997777899
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLA-KMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~-~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
+.+.++.++... |..+. ++.+ .-...++++..+..+. ++- ....|..++++.|-+++.+.+|+.
T Consensus 211 ~gn~~~~~~a~~-------~rK~~--Ggl~-----~k~r~laA~~~~~l~~-~~~~~~~~Han~mA~~La~~~~~~~G~~ 275 (342)
T COG2008 211 FGNRDFAKRARR-------WRKRA--GGLM-----RKARFLAAQGLYALED-DVWRLAADHANAMAARLAEGLEAKPGVK 275 (342)
T ss_pred EcCHHHHHHHHH-------HHHHh--cccH-----hhhhHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHhhhhcCCce
Confidence 999999876532 11111 1111 0112234445555555 543 444555668999999999877765
Q ss_pred cCc
Q psy8733 418 ECP 420 (621)
Q Consensus 418 ~~~ 420 (621)
+..
T Consensus 276 ~~~ 278 (342)
T COG2008 276 LAF 278 (342)
T ss_pred ecc
Confidence 543
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0025 Score=69.79 Aligned_cols=125 Identities=14% Similarity=0.193 Sum_probs=79.5
Q ss_pred CCCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+.+++++|.+..+....|+..+ + +++++|+++|+|=+++ +|- .+.-...+ |+..+| |.+| +
T Consensus 181 l~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~s--K~l~-~ 257 (403)
T PRK05093 181 IDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSA--KALG-G 257 (403)
T ss_pred hcCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEec--cccc-C
Confidence 3456888888866655566533 1 4578999999999977 321 11111112 245444 9998 5
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+... ....++.+++ ...++..++|+++.+. .+.++.+++.+++++.|.
T Consensus 258 G~rig~vv~~~~i~~~l~~~-----------~~~~t~~~~~-~~~~aa~a~L~~~~~~----~~~~~~~~~~~~l~~~L~ 321 (403)
T PRK05093 258 GFPIGAMLTTAEIASHFKVG-----------THGSTYGGNP-LACAVAEAVFDIINTP----EVLEGVKARRQRFVDGLQ 321 (403)
T ss_pred CcceEEEEEcHHHHhhcCCC-----------CCCCCCCCCH-HHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHH
Confidence 8 99999999987654320 1123444443 4466667788888543 345677788888999888
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 322 ~~ 323 (403)
T PRK05093 322 KI 323 (403)
T ss_pred HH
Confidence 75
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.003 Score=76.87 Aligned_cols=127 Identities=12% Similarity=0.267 Sum_probs=72.9
Q ss_pred ceEEEEeccc-ccccccccc--------ccccCCCcEEEecccc---cCCCc---ccc-------cc----cc-eEEecc
Q psy8733 274 ASYLYYCDNE-TVDGVEFNY--------IPDSQGIPLVSDMSSN---FLSRK---FDV-------SK----FG-VIIAGA 326 (621)
Q Consensus 274 t~~V~~thnE-T~tGv~~p~--------i~~~~g~llvvDavSs---~G~~p---IDv-------~~----~g-vl~asa 326 (621)
.+.|.+|... |+||...+. +++++++++|+|-+=+ +...+ .++ +. .. +++.|-
T Consensus 829 ~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~Sf 908 (1082)
T PLN02672 829 KPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGL 908 (1082)
T ss_pred CCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCc
Confidence 3567777765 999999883 3457899999998764 11111 111 11 12 456677
Q ss_pred ccccCCCc--cEEEEEchh-HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHh-hC----CHHHHHHH
Q psy8733 327 QKNIGPAG--ITVVIVRED-LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR-QG----GLAKMEQN 398 (621)
Q Consensus 327 qK~lGP~G--lg~livr~~-ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~-~g----Gl~~i~~r 398 (621)
=|.++.+| +|+++..++ +.+++... . ..+.++++ ..++..+++.++.. .+ -+....+.
T Consensus 909 SKkf~lpGLRIGylIap~~eLi~~l~~~-------~----~~s~~~~~---~q~Aaaaalall~~~~~~~~~~l~e~r~~ 974 (1082)
T PLN02672 909 STELLSGGHEFGFLALNDSVLIDAFHSA-------P----GLSRPHST---LKYTIKKLLGLKNQKSSDLLDGVAEQKKI 974 (1082)
T ss_pred HHhhccHHHHheeEEeCCHHHHHHHHHh-------h----hhcCCCcH---HHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 88888888 788888654 66654320 0 01112222 22333333433321 11 14555666
Q ss_pred HHHHHHHHHHHHHccC
Q psy8733 399 SLQKSVLLYQEIDNSD 414 (621)
Q Consensus 399 ~~~la~~L~e~L~~~~ 414 (621)
.++..+++++.|++.+
T Consensus 975 Lk~rRd~L~e~L~~~G 990 (1082)
T PLN02672 975 LKSRAERLKETLEACG 990 (1082)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 7778888899988763
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0011 Score=71.60 Aligned_cols=124 Identities=16% Similarity=0.230 Sum_probs=77.1
Q ss_pred CCCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+.+++++|.+....+..|+..+ + +++++++++|+|-+++ +|- .++..+.+ |++ +--|.+| +
T Consensus 164 ~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~-~ 240 (377)
T PRK02936 164 MNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAKGLG-N 240 (377)
T ss_pred ccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEE--EEccccc-C
Confidence 3456888888777776676643 1 4568999999999975 332 23332223 244 4579998 5
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+.. .....+++ +|....++..++|+.+.+. ...++.+++.+++++.|.
T Consensus 241 G~~ig~v~~~~~~~~~~~~-----------~~~~~t~~-~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~ 304 (377)
T PRK02936 241 GIPVGAMIGKKELGTAFGP-----------GSHGSTFG-GNPLAMAAAKEVLQVIKQP----SFLEEVQEKGEYFLQKLQ 304 (377)
T ss_pred CCccEEEEEcHHHHhhccC-----------CCCCCCCC-CCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHH
Confidence 6 7888888888665421 01123343 4566678888888887543 223445556666666665
Q ss_pred c
Q psy8733 412 N 412 (621)
Q Consensus 412 ~ 412 (621)
+
T Consensus 305 ~ 305 (377)
T PRK02936 305 E 305 (377)
T ss_pred H
Confidence 5
|
|
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00037 Score=75.49 Aligned_cols=139 Identities=14% Similarity=0.241 Sum_probs=86.6
Q ss_pred cCCCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCc----cccc----ccc--eEEeccccc
Q psy8733 268 WNRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK----FDVS----KFG--VIIAGAQKN 329 (621)
Q Consensus 268 l~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p----IDv~----~~g--vl~asaqK~ 329 (621)
.+++++||+|.+|.-.|.||-.++- +++++|+++|.|-+=...... +.+. -|. +-++|+-|.
T Consensus 167 ~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKt 246 (420)
T KOG0257|consen 167 SKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKT 246 (420)
T ss_pred hhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccce
Confidence 3688999999999999999999983 457899999999764432211 1111 122 678999999
Q ss_pred cCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHH-HhhCC---HHHHHHHHHH
Q psy8733 330 IGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWI-KRQGG---LAKMEQNSLQ 401 (621)
Q Consensus 330 lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i-~~~gG---l~~i~~r~~~ 401 (621)
+|-+| +|-++..+.++..+.+ ...+..+ .|| .....+...++++. .+-|| +..+.+..++
T Consensus 247 f~~TGWrlGW~igp~~L~~~~~~-----------vh~~~~~~~~Tp-~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~ 314 (420)
T KOG0257|consen 247 FGVTGWRLGWAIGPKHLYSALFP-----------VHQNFVFTCPTP-IQEASAAAFALELACLQPGGSYFITELVKEYKE 314 (420)
T ss_pred eeeeeeeeeeeechHHhhhhHHH-----------HhhccccccCcH-HHHHHHHHHhhhhhccCCcchhHHHHHHHHHHH
Confidence 99988 8888885555433221 1111222 233 22222222233332 22233 3346777888
Q ss_pred HHHHHHHHHHccCCcccC
Q psy8733 402 KSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 402 la~~L~e~L~~~~g~~~~ 419 (621)
+.+.|.+.|++++ +...
T Consensus 315 krdil~k~L~~lg-~~v~ 331 (420)
T KOG0257|consen 315 KRDILAKALEELG-LKVT 331 (420)
T ss_pred HHHHHHHHHHhcC-Cccc
Confidence 8899999999984 6543
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00092 Score=74.55 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=74.7
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEeccccc---CCCcc-cc---------cc-cc--eEEecc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF---LSRKF-DV---------SK-FG--VIIAGA 326 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~---G~~pI-Dv---------~~-~g--vl~asa 326 (621)
..++++|.+|+-.|++|...+. +++++++.+|+|-+=+. ...++ .+ .. -+ .++.|-
T Consensus 198 ~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~ 277 (447)
T PLN02607 198 NIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSL 277 (447)
T ss_pred CCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcc
Confidence 3478999999999999998883 34578999999987543 21111 11 11 12 667788
Q ss_pred ccccCCCc--cEEEEE-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH---HHHhhCCHHHHHHHHH
Q psy8733 327 QKNIGPAG--ITVVIV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA---WIKRQGGLAKMEQNSL 400 (621)
Q Consensus 327 qK~lGP~G--lg~liv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~---~i~~~gGl~~i~~r~~ 400 (621)
=|.+|-+| +|+++. ++++...+.. -+.++.++...-.++...|+ |+.+. ++...++.+
T Consensus 278 SK~fg~~GlRvG~ivs~n~~l~~~~~~--------------~~~~~~~s~~~q~~~~~~L~d~~~~~~~--l~~~r~~l~ 341 (447)
T PLN02607 278 SKDLGLPGFRVGTIYSYNDKVVTTARR--------------MSSFTLVSSQTQHLLASMLSDEEFTENY--IRTNRERLR 341 (447)
T ss_pred hhcCCCCcceEEEEEEcCHHHHHHHHH--------------HhhcCCCCHHHHHHHHHHhCCchhHHHH--HHHHHHHHH
Confidence 99999888 588887 4445443211 11122222223333333332 22221 345556666
Q ss_pred HHHHHHHHHHHcc
Q psy8733 401 QKSVLLYQEIDNS 413 (621)
Q Consensus 401 ~la~~L~e~L~~~ 413 (621)
+..+.+.+.|++.
T Consensus 342 ~~~~~~~~~L~~~ 354 (447)
T PLN02607 342 KRYEMIVQGLRRA 354 (447)
T ss_pred HHHHHHHHHHHhC
Confidence 6777788888775
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00028 Score=79.74 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=77.0
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---C-Cccc---------ccc--cc--eEEec
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---S-RKFD---------VSK--FG--VIIAG 325 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~-~pID---------v~~--~g--vl~as 325 (621)
..++++|.+|+-.|+||...+. +++++++++|+|-+-+.. . .... ... .+ +++.|
T Consensus 197 ~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S 276 (496)
T PLN02376 197 NKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYS 276 (496)
T ss_pred CCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEe
Confidence 3578999999999999999984 345789999999876532 1 1111 111 13 34689
Q ss_pred cccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH---HHHhhCCHHHHHHHHH
Q psy8733 326 AQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA---WIKRQGGLAKMEQNSL 400 (621)
Q Consensus 326 aqK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~---~i~~~gGl~~i~~r~~ 400 (621)
--|.+|.+| +|+++..++.+..... ....++..+...-+++...|+ |+.+. +....++.+
T Consensus 277 ~SK~~glpGlRvG~li~~~~~l~~~~~-------------~~~~~~~vs~~~Q~a~~~~L~d~~~~~~~--l~~~r~~l~ 341 (496)
T PLN02376 277 LSKDMGLPGFRVGIVYSFNDSVVSCAR-------------KMSSFGLVSSQTQLMLASMLSDDQFVDNF--LMESSRRLG 341 (496)
T ss_pred ccccCCCCcceEEEEEECCHHHHHHHH-------------HHhhcCCCCHHHHHHHHHHhCChhHHHHH--HHHHHHHHH
Confidence 999999777 7888885444322100 011223333444444444442 22221 444566667
Q ss_pred HHHHHHHHHHHcc
Q psy8733 401 QKSVLLYQEIDNS 413 (621)
Q Consensus 401 ~la~~L~e~L~~~ 413 (621)
++.+.+.+.|++.
T Consensus 342 ~r~~~l~~~L~~~ 354 (496)
T PLN02376 342 IRHKVFTTGIKKA 354 (496)
T ss_pred HHHHHHHHHHHHC
Confidence 7777788888765
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0036 Score=68.53 Aligned_cols=126 Identities=12% Similarity=0.201 Sum_probs=79.1
Q ss_pred CCCCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCc--cccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRK--FDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~p--IDv~~~----gvl~asaqK~lGP~ 333 (621)
+.+++++|.+.......|+..+- +++++|+++|+|=+++ +|... .-.+.+ |++.. =|.+| .
T Consensus 176 l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~--~K~lg-g 252 (397)
T TIGR03246 176 ISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTS--AKALG-G 252 (397)
T ss_pred hccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEe--ehhhh-C
Confidence 34568888888777777776531 4568999999999973 32110 111222 34433 58885 2
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.+..++++.+.+.. ....++++..| ....+..++|+.+.+. ++.++.+++.+++++.|.
T Consensus 253 G~pigav~~~~~i~~~~~~-----------~~~~~t~~~~p-~~~aaa~a~l~~~~~~----~l~~~~~~~~~~l~~~L~ 316 (397)
T TIGR03246 253 GFPIGAMLTTTEIAAHLKV-----------GTHGTTYGGNP-LACAVAGKVLDLVNTP----ELLAGVKQRHDLFVDGLE 316 (397)
T ss_pred CcceeEEEEcHHHHHhccC-----------CCcCCCCCCCH-HHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHH
Confidence 4 7888889888664421 01234554333 4466667888887543 456777888889999888
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
++.
T Consensus 317 ~l~ 319 (397)
T TIGR03246 317 KIN 319 (397)
T ss_pred HHH
Confidence 763
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.1e-05 Score=81.54 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=79.8
Q ss_pred eEEEEecccccccccccc-----ccccCCCcEEEecccccC--CCcccccc----cc-------eEEeccccccC-CCcc
Q psy8733 275 SYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL--SRKFDVSK----FG-------VIIAGAQKNIG-PAGI 335 (621)
Q Consensus 275 ~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G--~~pIDv~~----~g-------vl~asaqK~lG-P~Gl 335 (621)
++|.+|+ .|=.|+..|+ ++++++++++||.+-..- -.++.-+. .| +++-|.||.++ .+-.
T Consensus 170 ~~vvlt~-PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQt 248 (417)
T PF01276_consen 170 RLVVLTS-PTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPALTQT 248 (417)
T ss_dssp SEEEEES-S-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-
T ss_pred eEEEEeC-CCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCccccccceeeeechhhcccccccc
Confidence 3366665 5778999996 346789999999864321 01332221 24 89999999995 8889
Q ss_pred EEEEEchhH-H--hhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 336 TVVIVREDL-L--EYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWI-KRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 336 g~livr~~l-l--~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i-~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+++-++.+. + +++. +.-.++ -+|+...+..+..|.+++ .+. | .++.++..+++..+|+.
T Consensus 249 s~lh~~~~~~v~~~~~~-------------~~l~~~~TTSPSY~lmASlD~a~~~m~~~~-G-~~l~~~~i~~a~~~R~~ 313 (417)
T PF01276_consen 249 SMLHVKGDRIVDHERVN-------------EALSMHQTTSPSYPLMASLDVARAQMEEEE-G-RELLEEAIELAEEFRKK 313 (417)
T ss_dssp EEEEEETCCCTTHHHHH-------------HHHHHHS-SS--HHHHHHHHHHHHHHSHHH-H-HHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCcccHHHHH-------------HHHHHHcCCChHHHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHHHH
Confidence 999998874 2 1111 000111 367778888899999999 555 4 56677778888999999
Q ss_pred H---HccCCcccC
Q psy8733 410 I---DNSDKFYEC 419 (621)
Q Consensus 410 L---~~~~g~~~~ 419 (621)
| ..+.+|...
T Consensus 314 i~~~~~~~~~~~~ 326 (417)
T PF01276_consen 314 INRLNDIWGFKVL 326 (417)
T ss_dssp HHHHCCT-SSEES
T ss_pred HHhcCCCceEecC
Confidence 9 455555544
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.3e-05 Score=86.23 Aligned_cols=151 Identities=16% Similarity=0.162 Sum_probs=110.4
Q ss_pred hhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCcee-------eeeecccCCCccC--CCchhHHHHHHHHHHHH
Q psy8733 446 AFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVF-------HFKINADNNSVYN--TPPTFVVHVIQRVFAWI 516 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~-------~y~~~~~~~s~~n--TP~~~~iy~~~~vl~~~ 516 (621)
....|++++|+||-+||.|++++++|++++++..+..+.-. +..........|. |||+..++-++..++++
T Consensus 189 ~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~ 268 (371)
T PF00266_consen 189 ELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLL 268 (371)
T ss_dssp TTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHH
T ss_pred ccccceeeecccccCCCCchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhh
Confidence 34568899999994469999999999999988644322111 1111122233344 99999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHhccCCcccccC-CC----C-------Cc-ccHHHHHHHHHccCccccCCCCC----
Q psy8733 517 KRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPV-QA----G-------FP-LDELFLKEAKAHNMIQLKGHRLV---- 579 (621)
Q Consensus 517 ~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v-~~----~-------~~-~~~~~~~~~~~~~i~~~~g~~~~---- 579 (621)
+++|++.++++..+.++.+.+.+++.++. .... +. . .. -...+.+.++++||....|+...
T Consensus 269 -~~~g~~~i~~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~ 346 (371)
T PF00266_consen 269 -EEIGIERIRERIRELAEYLREALEELPGI-EVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSL 346 (371)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHTTTE-EESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHH
T ss_pred -hccccccchhhhhhHHHHHHhhhhcCCce-eEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHH
Confidence 56789999999999999999999987632 2111 11 0 01 23457888888899988888765
Q ss_pred ------CccceeeccCCCHHHHHHH
Q psy8733 580 ------GGIRASIYNAITVDEAVIL 598 (621)
Q Consensus 580 ------~~~r~~~~~a~~~~~~~~l 598 (621)
|.||+|...-.|.||+++|
T Consensus 347 ~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 347 DILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp HHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred HHhCCCCEEEEeccCCCCHHHHhhC
Confidence 8999999999999999987
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0026 Score=70.18 Aligned_cols=122 Identities=12% Similarity=0.225 Sum_probs=72.5
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC----cccccc--cceEEeccccccCCCc--
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR----KFDVSK--FGVIIAGAQKNIGPAG-- 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~----pIDv~~--~gvl~asaqK~lGP~G-- 334 (621)
++.+|.+-......|+..+- +++++|+++|+|-+|+ +|-. ..+... -|++++| |++|+-|
T Consensus 194 ~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~--K~lg~~G~p 271 (412)
T TIGR02407 194 LPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLS--KSISGYGLP 271 (412)
T ss_pred ceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEec--hhccCCccc
Confidence 45566554444445665431 4568999999999987 3310 111111 2366666 9998877
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-WIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+++++++ +... + ....++++ .+.....+..++++ ++.+. .+.++.+++.+++.+.|+.+
T Consensus 272 igav~~~~~~-~~~~---~--------~~~~~T~~-gnpl~~aaa~a~l~~~i~~~----~l~~~~~~~g~~l~~~l~~l 334 (412)
T TIGR02407 272 LALTLIKPEL-DVWK---P--------GEHNGTFR-GNNLAFVTATAALEYYWSDD----AFEKAVQRKSEIIQERLDRI 334 (412)
T ss_pred eeEEEEchhh-hccC---C--------CccCCCCC-ccHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHH
Confidence 8999999875 3221 1 01223443 33444555677888 45442 45566667777777777653
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0013 Score=70.71 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=80.7
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Ccc---c--c--cccc--eEEeccccccC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKF---D--V--SKFG--VIIAGAQKNIG 331 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pI---D--v--~~~g--vl~asaqK~lG 331 (621)
+++++|++++..|.||...+. +++++++++|+|-+-.-.. .++ + + .+.+ +++.|--|.+|
T Consensus 147 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 226 (364)
T PRK07865 147 QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSN 226 (364)
T ss_pred ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccC
Confidence 468899999888999998873 2457899999999865322 111 1 1 0223 88999999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|+++.++++++++... . .....+++.....++..+|+ +..-++.+.++.+++.+.+++.
T Consensus 227 ~~GlRiG~i~~~~~~~~~~~~~-------~-----~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~ 291 (364)
T PRK07865 227 LAGYRAGFVAGDPALVAELLEV-------R-----KHAGMMVPAPVQAAMVAALG---DDAHVREQRERYARRRAVLRPA 291 (364)
T ss_pred CCceeeEEEecCHHHHHHHHHH-------H-----HhcCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 787 88888888887655320 0 01111233334444434443 2112566667777788888888
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|.+.
T Consensus 292 L~~~ 295 (364)
T PRK07865 292 LEAA 295 (364)
T ss_pred HHHc
Confidence 8875
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0056 Score=67.19 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=78.3
Q ss_pred CCCCceEEEEeccccccccccc-c--------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN-Y--------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p-~--------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+.+++++|.+-.+....|+..+ . +++++|+++|+|=+++ +|.. ..-.+.+ |++.+ =|.+| .
T Consensus 180 l~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~--sK~l~-g 256 (406)
T PRK12381 180 IDDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTT--AKALG-G 256 (406)
T ss_pred ccCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEe--hhhhh-C
Confidence 3456777777655555565543 1 4568999999999974 4321 1111222 24444 49996 3
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++.++++.+.+.+. ....++. .+.....+..++|+.+.+. .+.++.+++.+++++.|+
T Consensus 257 G~~ig~~~~~~~~~~~~~~~-----------~~~~t~~-~~pl~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~L~ 320 (406)
T PRK12381 257 GFPIGAMLTTEKCASVMTVG-----------THGTTYG-GNPLASAVAGKVLELINTP----EMLNGVKQRHDWFVERLN 320 (406)
T ss_pred CCceEEEEEcHHHHhhcCCC-----------CCCCCCC-CCHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHH
Confidence 5 78889999887654320 1123443 4445567777888888643 456777788888888887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 321 ~l 322 (406)
T PRK12381 321 TI 322 (406)
T ss_pred HH
Confidence 75
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0014 Score=71.28 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=78.1
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC-----Ccc---------cccccc--eEEecc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS-----RKF---------DVSKFG--VIIAGA 326 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~-----~pI---------Dv~~~g--vl~asa 326 (621)
.++++++++|+-.|+||...+. +++++++++|+|-+=+-.. .++ +.+.++ +++.|-
T Consensus 164 ~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 243 (396)
T PRK09147 164 WARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSL 243 (396)
T ss_pred hhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEecc
Confidence 3578999999999999999873 3457899999998754321 111 112234 788899
Q ss_pred ccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 327 QKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 327 qK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
=|.+|.+| +|+++.++++++++.... .....+++.....+..+++. .+. -+.+..++.+++.+
T Consensus 244 SK~~~~~GlRiG~~~~~~~l~~~~~~~~------------~~~~~~~~~~~q~a~~~~~~--~~~-~~~~~~~~~~~~~~ 308 (396)
T PRK09147 244 SKRSNVPGLRSGFVAGDAALLKKFLLYR------------TYHGCAMPPAVQAASIAAWN--DEA-HVRENRALYREKFD 308 (396)
T ss_pred ccccCCccceeeeecCCHHHHHHHHHHh------------hhcccCCCHHHHHHHHHHhc--chh-HHHHHHHHHHHHHH
Confidence 99998777 788888888876653200 00111233333333333332 111 24555666666667
Q ss_pred HHHHHHHc
Q psy8733 405 LLYQEIDN 412 (621)
Q Consensus 405 ~L~e~L~~ 412 (621)
.+.+.|.+
T Consensus 309 ~~~~~L~~ 316 (396)
T PRK09147 309 AVTPILAP 316 (396)
T ss_pred HHHHHHHH
Confidence 77777665
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00045 Score=74.95 Aligned_cols=107 Identities=14% Similarity=0.244 Sum_probs=74.5
Q ss_pred cCCCCCceEEEEecccccccccccc-------ccccCCCcEEEecccccCCC-ccccccc-----ceEEeccccccC-CC
Q psy8733 268 WNRDPEASYLYYCDNETVDGVEFNY-------IPDSQGIPLVSDMSSNFLSR-KFDVSKF-----GVIIAGAQKNIG-PA 333 (621)
Q Consensus 268 l~i~~~t~~V~~thnET~tGv~~p~-------i~~~~g~llvvDavSs~G~~-pIDv~~~-----gvl~asaqK~lG-P~ 333 (621)
..++++++++..+|.++- |..-.+ +++++++++++|+.|..... .-++..+ |++++|++|.|| |.
T Consensus 151 ~AIne~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq 229 (395)
T COG1921 151 LAINENTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ 229 (395)
T ss_pred HHhccCCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc
Confidence 358899999999998864 332221 56789999999999865433 2344432 499999999995 87
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHh
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR 388 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~ 388 (621)
.|+++.|+++++++... |-.. .-+-+- ..++++.++|+....
T Consensus 230 -aGii~GkKelI~~lq~~-~l~R--------alrv~K---~tla~l~~aLe~y~~ 271 (395)
T COG1921 230 -AGIIVGKKELIEKLQSH-PLKR--------ALRVDK---ETLAALEAALELYLQ 271 (395)
T ss_pred -cceEechHHHHHHHHhh-hhhh--------hhhcCc---HhHHHHHHHHHHHcC
Confidence 89999999999887542 2110 011111 267888889987765
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0044 Score=67.86 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=55.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCcc---cccc--cc--eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKF---DVSK--FG--VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pI---Dv~~--~g--vl~asaqK~lGP~G 334 (621)
++++++++.+|+-.|.||...+. +++++++++|+|-+-+.....+ +... .+ +++.|-=|. +.+|
T Consensus 176 ~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pG 254 (416)
T PRK09440 176 IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-GLPG 254 (416)
T ss_pred cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEeccccc-CCCc
Confidence 35578999999999999999884 3457899999999864221111 1111 23 667888995 7677
Q ss_pred --cEEEEEchhHHhhh
Q psy8733 335 --ITVVIVREDLLEYA 348 (621)
Q Consensus 335 --lg~livr~~ll~~~ 348 (621)
+|+++..+++++++
T Consensus 255 lRiG~~i~~~~l~~~~ 270 (416)
T PRK09440 255 VRCGIVIADEEIIEAL 270 (416)
T ss_pred ceEEEEeCCHHHHHHH
Confidence 78888888887655
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0081 Score=64.95 Aligned_cols=123 Identities=10% Similarity=0.126 Sum_probs=73.3
Q ss_pred CCCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCCCc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGPAG 334 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP~G 334 (621)
.+++++|.+....+.+|+..+. +++++|+++++|-++. +|.. +.-.+.+ |++ +--|.+|| |
T Consensus 163 ~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G 239 (375)
T PRK04260 163 NKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLAN-G 239 (375)
T ss_pred CCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEE--EecccccC-C
Confidence 4567788888777777887651 3567899999999975 3321 1111122 244 45689974 4
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.++.++++.+.+.. ....+++++++. ...+..++|+.+.+. ...++.++..+.+++.+.+
T Consensus 240 ~~ig~~~~~~~~~~~~~~-----------~~~~~t~~~~~~-~~~aa~a~l~~~~~~----~~~~~~~~~~~~~~~~l~~ 303 (375)
T PRK04260 240 VPVGAMLAKSSLGGAFGY-----------GSHGSTFGGNKL-SMAAASATLDIMLTA----GFLEQALENGNYLQEQLQK 303 (375)
T ss_pred cceEEEEEcHHHHhhcCC-----------CCCCCCCCcCHH-HHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHH
Confidence 8999999987654321 012344544444 456666677776543 3334555555555555544
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0043 Score=67.89 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=75.2
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC-c--------ccccc-c-c-eEEeccccccC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR-K--------FDVSK-F-G-VIIAGAQKNIG 331 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~-p--------IDv~~-~-g-vl~asaqK~lG 331 (621)
++++++.++...|.||...+. +++++++++|+|-+-.-... . ..+.. . . +++.|-=|.+|
T Consensus 175 ~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~ 254 (404)
T PTZ00376 175 NGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMG 254 (404)
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccc
Confidence 456777789999999999883 34578999999987532211 0 11122 2 2 77788899999
Q ss_pred CCc--cEEEE---EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH---HHhh-CCHHHHHHHHHHH
Q psy8733 332 PAG--ITVVI---VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW---IKRQ-GGLAKMEQNSLQK 402 (621)
Q Consensus 332 P~G--lg~li---vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~---i~~~-gGl~~i~~r~~~l 402 (621)
.+| +|+++ .++++.+++... .... ......+++.....++..+|+- ..+. .-++.+.++.+++
T Consensus 255 ~~GlRvG~~~~~~~~~~~~~~l~~~------~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 326 (404)
T PTZ00376 255 LYGERIGALHIVCANKEEAANVLSQ------LKLI--IRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNM 326 (404)
T ss_pred ccccccceEEEEeCCHHHHHHHHHH------HHHH--HhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888 66663 355544432110 0000 0122233343444443333321 0000 0134556677788
Q ss_pred HHHHHHHHHcc
Q psy8733 403 SVLLYQEIDNS 413 (621)
Q Consensus 403 a~~L~e~L~~~ 413 (621)
.+.+++.|+++
T Consensus 327 r~~l~~~L~~~ 337 (404)
T PTZ00376 327 RQLLYDELKAL 337 (404)
T ss_pred HHHHHHHHHhc
Confidence 88888888876
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.001 Score=73.41 Aligned_cols=131 Identities=12% Similarity=0.092 Sum_probs=85.5
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Ccc--------cc----cccc--eEEecc
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKF--------DV----SKFG--VIIAGA 326 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pI--------Dv----~~~g--vl~asa 326 (621)
+++++.+|.-.|.||...+. +++++++++|.|=+=.-.. .+. ++ ++.+ +++.|-
T Consensus 210 ~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~Sf 289 (407)
T PLN02368 210 TVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTV 289 (407)
T ss_pred CeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecC
Confidence 68989999889999999884 3457899999997533211 111 11 1233 677888
Q ss_pred cccc-CCCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-----------HHHhh
Q psy8733 327 QKNI-GPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-----------WIKRQ 389 (621)
Q Consensus 327 qK~l-GP~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-----------~i~~~ 389 (621)
=|.+ |.+| +|.++. .+++++++... . ....+++++..+++.++|+ |..+
T Consensus 290 SK~~~~~~GlRiGy~i~~~~~~~li~~~~~~----------~---~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~- 355 (407)
T PLN02368 290 SKGYWGECGQRGGYFEMTNIPPKTVEEIYKV----------A---SIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRE- 355 (407)
T ss_pred CcccccCCccceEEEEEeCCCHHHHHHHHHH----------h---cccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHH-
Confidence 9998 7888 577774 67777654320 0 1122355556666666663 1211
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 390 GGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 390 gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+.++.+..+++.+.+++.|.+++|+...
T Consensus 356 --~~~~~~~~~~rr~~~~~~L~~~~g~~~~ 383 (407)
T PLN02368 356 --SKGILESLRRRARMMTDGFNSCKNVVCN 383 (407)
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCCCeEeC
Confidence 3556778888899999999998776443
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00072 Score=75.12 Aligned_cols=130 Identities=14% Similarity=0.097 Sum_probs=76.8
Q ss_pred CceEEEEecccccc-cccccc--------ccccCCCcEEEecccccC-----------CCcccc-------ccc-ceEEe
Q psy8733 273 EASYLYYCDNETVD-GVEFNY--------IPDSQGIPLVSDMSSNFL-----------SRKFDV-------SKF-GVIIA 324 (621)
Q Consensus 273 ~t~~V~~thnET~t-Gv~~p~--------i~~~~g~llvvDavSs~G-----------~~pIDv-------~~~-gvl~a 324 (621)
++++|.++.-.|++ |...+. +++++|+++|.|++..++ .....+ -.+ +.+..
T Consensus 152 ~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~m 231 (431)
T cd00617 152 NIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTM 231 (431)
T ss_pred CccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEE
Confidence 47888887766766 777652 456899999999997753 222222 123 38899
Q ss_pred ccccccC-CCccEEEEEch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q psy8733 325 GAQKNIG-PAGITVVIVRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQK 402 (621)
Q Consensus 325 saqK~lG-P~Glg~livr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~l 402 (621)
|++|..+ |. -|+++.++ ++.+++...... .+....++..+.-.+.++..+|+...+ .+.+.++..+.
T Consensus 232 S~~K~~~~~~-GG~i~~~d~~l~~~~~~~~~~-------~~~~~~~gG~~~r~~~A~A~gL~e~~~---~~~l~~~~~~r 300 (431)
T cd00617 232 SAKKDGLVNI-GGFLALRDDELYEEARQRVVL-------YEGFVTYGGMAGRDMEALAQGLREAVE---EDYLRHRVEQV 300 (431)
T ss_pred EeecCCCCcc-ceEEEeCcHHHHHHHHHhccc-------cCCccccccccHHHHHHHHHHHHhccc---HHHHHHHHHHH
Confidence 9999886 55 35777776 477776532110 111122333344445555545543211 23444444444
Q ss_pred HHHHHHHHHccC
Q psy8733 403 SVLLYQEIDNSD 414 (621)
Q Consensus 403 a~~L~e~L~~~~ 414 (621)
++|.+.|++.|
T Consensus 301 -~~l~~~L~~~G 311 (431)
T cd00617 301 -RYLGDRLDEAG 311 (431)
T ss_pred -HHHHHHHHHCC
Confidence 78889998875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.002 Score=73.27 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=52.6
Q ss_pred CCCCceEEEEecccccccccccc--------cccc--CCCcEEEecccccCC-Ccccc-ccc--c-eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDS--QGIPLVSDMSSNFLS-RKFDV-SKF--G-VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~--~g~llvvDavSs~G~-~pIDv-~~~--g-vl~asaqK~lGP~G 334 (621)
+++++++|.++.-.|+||...+. ++++ +++++|+|=+=+-.. ....+ +.+ . +++.|-=|.+|.+|
T Consensus 237 ~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G 316 (521)
T TIGR03801 237 RDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATG 316 (521)
T ss_pred cCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCch
Confidence 46789999999989999999883 2444 489999997643221 11111 111 2 78889999999888
Q ss_pred --cEEEEEchh
Q psy8733 335 --ITVVIVRED 343 (621)
Q Consensus 335 --lg~livr~~ 343 (621)
+|+++..++
T Consensus 317 ~RlG~i~~~~~ 327 (521)
T TIGR03801 317 WRLGTIALHKD 327 (521)
T ss_pred hhhhhhhcCch
Confidence 888988765
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00018 Score=75.29 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=108.8
Q ss_pred hhhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC----CCceee---eeecccC----CCccCCCchhHHHHHHHHH
Q psy8733 446 AFFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI----TPTVFH---FKINADN----NSVYNTPPTFVVHVIQRVF 513 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~----~p~~~~---y~~~~~~----~s~~nTP~~~~iy~~~~vl 513 (621)
.+.-|+.|-|.||.+| |+|++++=-++.++++-... .-..+| |-+.-.. .-.++|||+-.+|-|---|
T Consensus 193 ewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL 272 (385)
T KOG2862|consen 193 EWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAAL 272 (385)
T ss_pred hhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHH
Confidence 4667999999999999 99999988888888763211 122222 2222222 3456899999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHhccC--CcccccCCC--C-----C--c-ccHHHHHHHHHc-cCccccCCCCCC
Q psy8733 514 AWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD--KFYECPVQA--G-----F--P-LDELFLKEAKAH-NMIQLKGHRLVG 580 (621)
Q Consensus 514 ~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~--~~~~~~v~~--~-----~--~-~~~~~~~~~~~~-~i~~~~g~~~~~ 580 (621)
.-|.++| ++..=+|-++=|+.+|..+++.. .|...+-.. . . - --+++...++.| ++..+.|++.++
T Consensus 273 ~~I~eeG-L~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~ 351 (385)
T KOG2862|consen 273 ALIAEEG-LENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTV 351 (385)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCc
Confidence 9998776 99999999999999999999853 221111000 0 0 1 234577888888 777999999976
Q ss_pred c--cceeeccCC-CHHHHHHHHHHHH
Q psy8733 581 G--IRASIYNAI-TVDEAVILVKFMK 603 (621)
Q Consensus 581 ~--~r~~~~~a~-~~~~~~~l~~~~~ 603 (621)
+ |||..+=-- +.|-++..++.|+
T Consensus 352 gKv~RIGl~gcna~~e~i~~v~~ll~ 377 (385)
T KOG2862|consen 352 GKVFRIGLLGCNANVEYIDNVVELLK 377 (385)
T ss_pred ccEEEEEEeeccCCcHHHHHHHHHHH
Confidence 6 999976432 3344455555444
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.4e-05 Score=82.90 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=121.6
Q ss_pred hhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC--CCceeeeeeccc---C-CCccCCCchhHHHHHHHHHHHHHhc
Q psy8733 447 FFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI--TPTVFHFKINAD---N-NSVYNTPPTFVVHVIQRVFAWIKRQ 519 (621)
Q Consensus 447 ~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~--~p~~~~y~~~~~---~-~s~~nTP~~~~iy~~~~vl~~~~~~ 519 (621)
...|+++.|+||.++ |.|+++++++++++++..+. .|..++|....+ . ..+.+|||+..+|.+...++|+.+.
T Consensus 190 ~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~ 269 (401)
T PLN02409 190 WGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEE 269 (401)
T ss_pred cCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHh
Confidence 457899999999994 99999999999999875432 344554433211 1 2336799999999999999999854
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCCcccccCCC---C---------Cccc-HHHHHHH-HHccCccccCCCC--CCccc
Q psy8733 520 GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA---G---------FPLD-ELFLKEA-KAHNMIQLKGHRL--VGGIR 583 (621)
Q Consensus 520 gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~---~---------~~~~-~~~~~~~-~~~~i~~~~g~~~--~~~~r 583 (621)
|++.++++.++.++.+++.+++. ++-....++ . ...+ .++.+.+ +++||....|++. .+.||
T Consensus 270 -G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~R 347 (401)
T PLN02409 270 -GLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFR 347 (401)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEE
Confidence 69999999999999999999864 332111111 0 0122 3465554 6789999999987 34599
Q ss_pred eeeccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 584 ASIYNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 584 ~~~~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
|+...-++.+++..++..|.+-..+.+
T Consensus 348 ig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 348 IGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999998777654
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.019 Score=63.45 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=80.1
Q ss_pred CCceEEEEec-ccccccccccc---------ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccC-C-
Q psy8733 272 PEASYLYYCD-NETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIG-P- 332 (621)
Q Consensus 272 ~~t~~V~~th-nET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lG-P- 332 (621)
++..+|.+-. .....|+..+- +++++|+++|+|-+++ +|. ..+-.+.+ |++++| |++| .
T Consensus 198 ~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~--K~l~gG~ 275 (423)
T PRK05964 198 GEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLS--KGLTGGY 275 (423)
T ss_pred CcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeeeee--hhhhcCc
Confidence 3556666544 34556777641 4578999999999986 531 11111222 356555 9994 3
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
-.+|.++.++++.+.+....+. .. ....++++ .|.....+..++++.+.++ + +.++..++.+++++.|.+
T Consensus 276 ~p~~av~~~~~i~~~~~~~~~~----~~-~~~~~T~~-~np~~~aaa~a~l~~l~~~-~---~~~~~~~~g~~l~~~l~~ 345 (423)
T PRK05964 276 LPLAATLCTAEIFEAFYSDDRA----KA-FMHSPSYT-ANPLACAAANASLDLFEDE-P---VLERVAALSAGLAEGLEP 345 (423)
T ss_pred ccceEEEEcHHHHHhhhcCCcc----cc-cccCCCCC-cCHHHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHh
Confidence 3588899999998765321000 00 00123333 4555677788889988765 3 456777888888888876
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 346 l 346 (423)
T PRK05964 346 F 346 (423)
T ss_pred h
Confidence 5
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0001 Score=77.89 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=121.8
Q ss_pred hhHHHHHhhccccc-ccCCcEEeeecHhHhhhcC-CCCCceeeeee----cccCCCccCCCchhHHHHHHHHHHHHHhcC
Q psy8733 447 FFFGVIIAGAQKNI-GPAGITVVIVREDLLEYAL-PITPTVFHFKI----NADNNSVYNTPPTFVVHVIQRVFAWIKRQG 520 (621)
Q Consensus 447 ~~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~-~~~p~~~~y~~----~~~~~s~~nTP~~~~iy~~~~vl~~~~~~g 520 (621)
+..|++.+|.||.+ ||+|+++++++++++++.. +..|..+++.. ..+.+++.+|||+..++.+...|+++.+.|
T Consensus 176 ~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g 255 (355)
T TIGR03301 176 LDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEG 255 (355)
T ss_pred cCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc
Confidence 35688899999998 6999999999999998754 33343333221 123366788999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCCcccccCCC--------------CCc-ccHHHHHHHHHccCccccCCCC-CCccce
Q psy8733 521 GLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA--------------GFP-LDELFLKEAKAHNMIQLKGHRL-VGGIRA 584 (621)
Q Consensus 521 g~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~--------------~~~-~~~~~~~~~~~~~i~~~~g~~~-~~~~r~ 584 (621)
+++...++.+++++.+++.+++. ++ .....+ ... ...++.+.++++||+...|++. .+.||+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~L~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRi 333 (355)
T TIGR03301 256 GVPARIARYRRNRELLVDGLRAL-GF-QPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRI 333 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHc-CC-eeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEE
Confidence 99999999999999999999875 32 211111 001 1246889999999998888754 478999
Q ss_pred eeccCCCHHHHHHHHHHHHHH
Q psy8733 585 SIYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 585 ~~~~a~~~~~~~~l~~~~~~~ 605 (621)
+.++.++.||++++++.|++.
T Consensus 334 s~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 334 GTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred ecCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999763
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0078 Score=69.58 Aligned_cols=139 Identities=12% Similarity=0.061 Sum_probs=92.9
Q ss_pred ceEEEEecccccccccccc-----cc---ccCCC--cEEEecccccCC-----------Cccc-----------------
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IP---DSQGI--PLVSDMSSNFLS-----------RKFD----------------- 315 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~---~~~g~--llvvDavSs~G~-----------~pID----------------- 315 (621)
+-.|..|...|.+|.+=|+ ++ +++|+ .++|||+-+-.. .|.+
T Consensus 279 ~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~ 358 (608)
T TIGR03811 279 ILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKE 358 (608)
T ss_pred eEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccc
Confidence 4567788889999999886 34 35676 599999754321 1110
Q ss_pred ------------ccccceEEeccccccC-CCccEEEEEchhHHhhhCCCCCceeeccccc-----cCCCccCCchHHHHH
Q psy8733 316 ------------VSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINA-----DNNSVYNTPPTFVVH 377 (621)
Q Consensus 316 ------------v~~~gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~-----~~~s~~~TP~v~~I~ 377 (621)
++..|-+....||++. |-+.|.+++|+..+.+.....+.|+.-.... ......++.+-+...
T Consensus 359 ~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~Al 438 (608)
T TIGR03811 359 YISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAA 438 (608)
T ss_pred cccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHH
Confidence 2334578999999997 9999999999876544333334444211100 001112343335566
Q ss_pred HHHHHHHHH--HhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 378 VIQRVFAWI--KRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 378 aL~~aL~~i--~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++-.+++.+ -.. |..++..+..++++++++.|.++
T Consensus 439 klW~~lr~l~~G~~-Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 439 SVWAAHKVLPLNVT-GYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred HHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 666788887 445 89999999999999999999986
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.02 Score=63.85 Aligned_cols=123 Identities=13% Similarity=0.171 Sum_probs=77.7
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP~G- 334 (621)
+++.+|.+-......|+..|- +++++|+++|+|=+++ +|-. .+-.+.+ |+++.| |.+| .|
T Consensus 218 ~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~g--K~l~-~G~ 294 (443)
T PRK06058 218 DNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTA--KGIA-GGL 294 (443)
T ss_pred CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEc--cccc-CCC
Confidence 356666654444445666541 4568999999999986 4311 1111223 366665 9996 35
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+. ...++++.. ..+..+..++|+.+.++ ++.++.+++.++|++.|+++
T Consensus 295 Pi~av~~~~~i~~~~~~~-----------~~~~T~~gn-pl~~aaa~a~L~~~~~~----~l~~~~~~~g~~l~~~L~~l 358 (443)
T PRK06058 295 PLSAVTGRAEIMDAPHPG-----------GLGGTYGGN-PVACAAALAAIETIEED----DLVARARQIEALMTDRLRAL 358 (443)
T ss_pred ccEEEEEcHHHHhhccCC-----------CCCCCCCCC-HHHHHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHHH
Confidence 88999999987654220 123556543 44566777888988775 45566777788888888764
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.036 Score=61.35 Aligned_cols=123 Identities=20% Similarity=0.326 Sum_probs=78.0
Q ss_pred CCceEEEEeccccccccccc-c--------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFN-Y--------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p-~--------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lGP~G- 334 (621)
++..+|.+-......|+..+ . +++++|+++|+|=+++ +|. ...-.+.++ +++ -=|.+| .|
T Consensus 197 ~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~--~sK~l~-~G~ 273 (421)
T PRK06777 197 DQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLIT--MAKSLG-GGM 273 (421)
T ss_pred CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEe--eehhhc-CCC
Confidence 34566666555555575433 1 4568999999999977 321 122223333 443 458887 45
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+. ...++++. |.....+..++|+.+.+. ++.++.+++.+++++.|+++
T Consensus 274 pigav~~~~~i~~~~~~~-----------~~~~T~~~-~p~~~aaa~a~L~~~~~~----~l~~~~~~~g~~l~~~L~~l 337 (421)
T PRK06777 274 PISAVVGRAEVMDAPAPG-----------GLGGTYAG-NPLAVAAALAVLDVIAEE----KLCQRALILGAHLVEVLEKA 337 (421)
T ss_pred ceEEEEEcHHHHhccCCC-----------CCCCCCCc-CHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHH
Confidence 78899999887654320 12345543 445577778888888664 56777888888888888875
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.055 Score=60.45 Aligned_cols=123 Identities=18% Similarity=0.241 Sum_probs=81.3
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCc--cccccc----ceEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRK--FDVSKF----GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~p--IDv~~~----gvl~asaqK~lGP~G- 334 (621)
+++++|.+....+.+|+..+- +++++|+++|+|=+++ +|..- +-.+.+ |++.. =|.+| .|
T Consensus 203 ~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitl--sK~l~-~G~ 279 (443)
T PRK08360 203 EGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITL--GKPLG-GGL 279 (443)
T ss_pred CCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEe--ccccc-CCc
Confidence 568888888777778987762 3568999999999976 43211 111122 35554 69997 45
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.. .....++..+|.. ..+..++|+.+.+. + +.++.+++.+++++.|+++
T Consensus 280 pigav~~~~~i~~~~~~-----------~~~~~T~~~~p~~-~aaa~a~l~~l~~~-~---l~~~~~~~g~~l~~~L~~l 343 (443)
T PRK08360 280 PISATIGRAEIMDSLPP-----------LAHAFTLSGNPVA-SAAALAVIEEIEEK-N---LLKRAEKLGNYTKKRLEEM 343 (443)
T ss_pred eeEEEEEcHHHHhhhcC-----------CCCCCCCCcCHHH-HHHHHHHHHHHHHc-C---HHHHHHHHHHHHHHHHHHH
Confidence 8999999988765531 0112344444444 67777888988765 3 4567777778888877764
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.05 Score=60.31 Aligned_cols=122 Identities=12% Similarity=0.219 Sum_probs=70.6
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCCcc-
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPAGI- 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~Gl- 335 (621)
++.+|.+-..-...|+..+- +++++|+++|+|-+++ +|- ..+-.+.+ |++++| |.+|+.|+
T Consensus 198 ~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~--K~l~~~G~p 275 (425)
T PRK09264 198 LPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLS--KSISGYGLP 275 (425)
T ss_pred ceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEec--cccCCCccc
Confidence 34555544444445655431 4568999999999986 321 11111222 366665 99998785
Q ss_pred -EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHH-HHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 -TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVF-AWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 -g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL-~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|.+++++++ .... + ....++++..| .+..+..+++ +++.+ +++.++.+++.+++++.|+++
T Consensus 276 igav~~~~~i-~~~~---~--------~~~~~T~~gnp-~~~aaa~a~l~~~~~~----~~l~~~~~~~g~~l~~~l~~l 338 (425)
T PRK09264 276 MALVLIKPEL-DVWK---P--------GEHNGTFRGNN-LAFVTATAALEEYWSD----DAFEKEVKAKGELVRERLEEI 338 (425)
T ss_pred eEEEEEchhh-hccC---C--------CccCCCCCCCH-HHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHH
Confidence 999999875 2211 1 01233443333 3344555677 44433 256667777778888877764
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.005 Score=67.12 Aligned_cols=128 Identities=19% Similarity=0.241 Sum_probs=81.9
Q ss_pred CCCCCceEEEEecccccccccccc---------ccccCCCcEEEecccccCCCcccc---cccc----eEEeccccccC-
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRKFDV---SKFG----VIIAGAQKNIG- 331 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~pIDv---~~~g----vl~asaqK~lG- 331 (621)
.++++|.+|.+=...--.|+..+- +++++|+++|+|=+|+=.++.=.+ +.+| ++. .-|.||
T Consensus 180 ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~t--laK~LgG 257 (404)
T COG4992 180 AIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT--LAKALGG 257 (404)
T ss_pred HhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEE--eeccccC
Confidence 366788888876666666887763 467899999999999866554333 2233 333 349993
Q ss_pred CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 332 P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
--=+|.++.++...+.+. | -.++++|+--|. +..+..++|+.+.++ .+-++.+++.+++.+.|.
T Consensus 258 G~PigA~la~~~~~~~~~---~--------G~HgSTfGGNpL-acAv~~a~l~~l~~e----~ll~~v~~~g~~~~~~L~ 321 (404)
T COG4992 258 GFPIGAMLATEEIASAFT---P--------GDHGSTFGGNPL-ACAVALAVLEVLLEE----GLLENVREKGEYLLQRLR 321 (404)
T ss_pred CccceeeEEchhhhhcCC---C--------CcccCCCCcCHH-HHHHHHHHHHHHcch----hHHHHHHHHHHHHHHHHH
Confidence 122667777755433221 2 235678865444 445567789999876 344556677778888887
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
++.
T Consensus 322 ~l~ 324 (404)
T COG4992 322 ELK 324 (404)
T ss_pred HHh
Confidence 763
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0028 Score=70.39 Aligned_cols=130 Identities=8% Similarity=0.087 Sum_probs=74.1
Q ss_pred ceEEEEecccccc-cccccc--------ccccCCCcEEEecccccCCC-----------cccc--------cccceEEec
Q psy8733 274 ASYLYYCDNETVD-GVEFNY--------IPDSQGIPLVSDMSSNFLSR-----------KFDV--------SKFGVIIAG 325 (621)
Q Consensus 274 t~~V~~thnET~t-Gv~~p~--------i~~~~g~llvvDavSs~G~~-----------pIDv--------~~~gvl~as 325 (621)
+++|.+...-+.. |...+. +++++|+++|.|++..++.- ..++ +-.|.+++|
T Consensus 171 ~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S 250 (450)
T TIGR02618 171 IPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMS 250 (450)
T ss_pred cCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEe
Confidence 4455443333433 665442 45789999999999998641 2222 123589999
Q ss_pred cccccC-CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 326 AQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 326 aqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
++|-.+ |.|--++.-++++.++++.....+ +.-.+++-.+...+.++..+|+...+. ...++-...++
T Consensus 251 ~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~-------eG~~tyGgla~r~~~ala~gL~e~~~~----~y~~~r~~~a~ 319 (450)
T TIGR02618 251 GKKDCLVNIGGFLCMNDDEMFQSAKELVVVF-------EGMPSYGGLAGRDMEAMAIGIREAVDY----EYIEHRVKQVR 319 (450)
T ss_pred eccCCCCCCceEEEeCCHHHHHHHHHHhhhc-------CCccccCchhhhhHHHHHHHHHHhhhH----HHHHHHHHHHH
Confidence 999996 877544445677777765433221 111233433333445555555543332 22233334567
Q ss_pred HHHHHHHccC
Q psy8733 405 LLYQEIDNSD 414 (621)
Q Consensus 405 ~L~e~L~~~~ 414 (621)
+|-+.|++.|
T Consensus 320 ~La~~L~~~G 329 (450)
T TIGR02618 320 YLGDKLKAAG 329 (450)
T ss_pred HHHHHHHHCC
Confidence 8888888774
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0043 Score=67.58 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=74.8
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCc-----cc---cccc-c--eEEeccccccCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK-----FD---VSKF-G--VIIAGAQKNIGP 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p-----ID---v~~~-g--vl~asaqK~lGP 332 (621)
+++.++.+++..|.||...+. +++++++++|.|-+-.-.... .. +... + +++.|-=|.+|+
T Consensus 171 ~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~ 250 (396)
T PRK09257 171 AGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGL 250 (396)
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcc
Confidence 345666668888999999884 346789999999764332211 11 1222 2 778999999999
Q ss_pred Cc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH------HHhhCCHHHHHHHHHH
Q psy8733 333 AG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW------IKRQGGLAKMEQNSLQ 401 (621)
Q Consensus 333 ~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~------i~~~gGl~~i~~r~~~ 401 (621)
+| +|++++ .++.+.++.. .+... ....+.+++.....++...|+. ..+. ++.+.++.++
T Consensus 251 ~GlRiG~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~--~~~~r~~~~~ 320 (396)
T PRK09257 251 YGERVGALSVVAEDAEEADRVLS------QLKAT--IRTNYSNPPAHGAAIVATILNDPELRAEWEAE--LEEMRERIKA 320 (396)
T ss_pred ccccceeEEEEeCCHHHHHHHHH------HHHHH--hhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHH
Confidence 98 566653 2333322110 00000 0122334444444444433321 1122 5567777788
Q ss_pred HHHHHHHHHHcc
Q psy8733 402 KSVLLYQEIDNS 413 (621)
Q Consensus 402 la~~L~e~L~~~ 413 (621)
+.+.+++.|++.
T Consensus 321 rr~~l~~~L~~~ 332 (396)
T PRK09257 321 MRQLLVEALKAK 332 (396)
T ss_pred HHHHHHHHHHhc
Confidence 888888888876
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0018 Score=76.32 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=82.6
Q ss_pred CceEEEEecccccccccccc--c---cccCCCcEEEeccccc--------CC-Ccc-----cccccc-eEEeccccccC-
Q psy8733 273 EASYLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNF--------LS-RKF-----DVSKFG-VIIAGAQKNIG- 331 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~--------G~-~pI-----Dv~~~g-vl~asaqK~lG- 331 (621)
++++|.+|+ .|=.|+..++ | ++.++++++||-+-.. .. .++ .-..-| +++-|.||.|+
T Consensus 312 ~~~avvlt~-PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a 390 (755)
T PRK15029 312 KPSYCVVTN-CTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA 390 (755)
T ss_pred CceEEEEEC-CCCcceeeCHHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccc
Confidence 444666654 5778999996 3 4578999999965432 10 112 101234 88889999995
Q ss_pred CCccEEEEEchh--HHhhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVRED--LLEYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWIKR-QGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 332 P~Glg~livr~~--ll~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i~~-~gGl~~i~~r~~~la~~L 406 (621)
.+..+.+-++.+ .++ .....+.-.++ -+|+...+.+|..|..++.. . | +...++..+.+..+
T Consensus 391 lTQaS~LHv~~~~~~id-----------~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~-G-~~l~~~~i~~~~~~ 457 (755)
T PRK15029 391 LSQASYIHVREGRGAIN-----------FSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNS-G-LSLTQEVIDEAVDF 457 (755)
T ss_pred hhhhhhheeCCCccccC-----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHH
Confidence 887888877654 111 00000000112 36777788888888888876 4 4 55667778888899
Q ss_pred HHHHHccCC
Q psy8733 407 YQEIDNSDK 415 (621)
Q Consensus 407 ~e~L~~~~g 415 (621)
++.|.++++
T Consensus 458 r~~l~~~~~ 466 (755)
T PRK15029 458 RQAMARLYK 466 (755)
T ss_pred HHHHHhccc
Confidence 999988764
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0025 Score=69.92 Aligned_cols=128 Identities=13% Similarity=0.177 Sum_probs=76.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCC-CcEEEecccc--cCCCcccccccceEEeccccccCCCc---cEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQG-IPLVSDMSSN--FLSRKFDVSKFGVIIAGAQKNIGPAG---ITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g-~llvvDavSs--~G~~pIDv~~~gvl~asaqK~lGP~G---lg~l 338 (621)
+++++++|++=.-.|.+.-..|+ +++++| ++++||.+=+ +...|++.. .|+++.|+-|.++-.| .|++
T Consensus 137 l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~G-aDivv~S~TKyl~Ghsdv~~G~v 215 (386)
T PF01053_consen 137 LRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNPLELG-ADIVVHSATKYLSGHSDVMGGAV 215 (386)
T ss_dssp HCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT--SEEEEETTTTTTTSSSE-EEEE
T ss_pred ccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeeccCcCC-ceEEEeeccccccCCcceeeEEE
Confidence 56789999887777777777775 346788 9999998743 333455442 3599999999996555 6677
Q ss_pred EEch--hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 339 IVRE--DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 339 ivr~--~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++++ ++.+++.. +. ...-.++.....+.+...++ .+.-+.+++.+.+..|.+.|++.+.+
T Consensus 216 v~~~~~~~~~~l~~-------~~-----~~~G~~~~p~da~ll~rgl~------Tl~~R~~~~~~nA~~lA~~L~~hp~V 277 (386)
T PF01053_consen 216 VVNGSSELYDRLRE-------FR-----RLLGATLSPFDAWLLLRGLR------TLPLRMERQNENAEALAEFLEEHPKV 277 (386)
T ss_dssp EESSHHHHHHHHHH-------HH-----HHHT-B--HHHHHHHHHHHT------THHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred EECchhhhhhhhcc-------hh-----hhcCccchHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7665 44443311 00 01112333333333322222 46677778888888999999987743
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00023 Score=76.32 Aligned_cols=97 Identities=21% Similarity=0.243 Sum_probs=75.9
Q ss_pred hhHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCC-Cceeee----eecccCCCccCCCchhHHHHHHHHHHHHHhcC
Q psy8733 447 FFFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT-PTVFHF----KINADNNSVYNTPPTFVVHVIQRVFAWIKRQG 520 (621)
Q Consensus 447 ~~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~-p~~~~y----~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~g 520 (621)
+.+|++..|.||.+ ||.|++++++++++++...... |..+++ ....+++++..|||+..++.+...++++.+.|
T Consensus 182 ~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~ 261 (368)
T PRK13479 182 LGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEG 261 (368)
T ss_pred cCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhh
Confidence 35788889999987 6999999999999987644322 222221 11123466667999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcc
Q psy8733 521 GLAKMEQNSLQKSVLLYQEIDNS 543 (621)
Q Consensus 521 g~~~~~~~~~~ka~~lY~~id~~ 543 (621)
|++...++..++++.+.+.+++.
T Consensus 262 ~~~~~~~~~~~~~~~l~~~L~~~ 284 (368)
T PRK13479 262 GVPARGARYANNQRTLVAGMRAL 284 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999889999988888888665
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00027 Score=75.79 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=118.6
Q ss_pred hhHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCC-Cceee----eeecc-cCCCccCCCchhHHHHHHHHHHHHHhc
Q psy8733 447 FFFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT-PTVFH----FKINA-DNNSVYNTPPTFVVHVIQRVFAWIKRQ 519 (621)
Q Consensus 447 ~~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~-p~~~~----y~~~~-~~~s~~nTP~~~~iy~~~~vl~~~~~~ 519 (621)
...|++++|.||.+ ||.|+++++++++++++..+.. +..++ |+... .++....|||+..++.+...++++.+.
T Consensus 180 ~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~ 259 (363)
T TIGR02326 180 LHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKE 259 (363)
T ss_pred cCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 35789999999998 6999999999999987754322 21111 11111 122333489999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCCcccccCCC-------------CC-c-ccHHHHHHHHHccCccccCCCC-CCccc
Q psy8733 520 GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA-------------GF-P-LDELFLKEAKAHNMIQLKGHRL-VGGIR 583 (621)
Q Consensus 520 gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~-------------~~-~-~~~~~~~~~~~~~i~~~~g~~~-~~~~r 583 (621)
||++.+.++..++++.+++.+++.. + .....+ .. . ....|.+.++++||....|+.. .+.||
T Consensus 260 g~~~~~~~~~~~~~~~l~~~L~~~g-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iR 337 (363)
T TIGR02326 260 GGVAARHQRYQQNQKTLVAGMRALG-F-EPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFR 337 (363)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHcC-C-eeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEE
Confidence 9999999999999999999998752 1 111110 10 1 2245888999999998888755 56799
Q ss_pred eeeccCCCHHHHHHHHHHHHHHH
Q psy8733 584 ASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 584 ~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
|+.+..++.|+++++++.|++..
T Consensus 338 i~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 338 IGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred EecCCCCCHHHHHHHHHHHHHHh
Confidence 99988999999999999998753
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.033 Score=61.34 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=75.4
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccccCCC--ccccccc----ceEEeccccccCCCc--
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSR--KFDVSKF----GVIIAGAQKNIGPAG-- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~--pIDv~~~----gvl~asaqK~lGP~G-- 334 (621)
+++++|.+..+-..+|...+. +++++|+++|+|=+++-... ..-.+.+ |++ +-=|.+| .|
T Consensus 194 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~-~G~p 270 (423)
T TIGR00713 194 EEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIG-GGLP 270 (423)
T ss_pred CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhc-CCCc
Confidence 467777775444447887762 35689999999999852211 1111112 233 3468887 56
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+..+. ...++++. |.....+..++|+.+.+.+=++.+.+....+.+.|.+.+++.
T Consensus 271 ig~v~~~~~i~~~~~~~~~~--------~~~~T~~~-~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (423)
T TIGR00713 271 VGAFGGRREIMERLAPEGPV--------YQAGTLSG-NPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDT 340 (423)
T ss_pred eeeeeEHHHHHHhhCcCCCe--------eeccCCCC-CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 79999999988765421110 01234443 444566677789988765213455555555555555544444
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.011 Score=65.48 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=76.6
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---CC-cccc----cccc-eEEeccccccCCCc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---SR-KFDV----SKFG-VIIAGAQKNIGPAG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~~-pIDv----~~~g-vl~asaqK~lGP~G 334 (621)
++++++.+|+-.|.||...+. +++++++++|.|-+-+-. .. +..+ .+.. +.+.|-=|.++.||
T Consensus 170 ~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pG 249 (433)
T PRK06855 170 PSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPG 249 (433)
T ss_pred CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCc
Confidence 467888888888999999884 346789999999875432 11 1222 1212 77888899999778
Q ss_pred --cEEEEEc-----hh---HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC----HHHHHHHHH
Q psy8733 335 --ITVVIVR-----ED---LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG----LAKMEQNSL 400 (621)
Q Consensus 335 --lg~livr-----~~---ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG----l~~i~~r~~ 400 (621)
+|+++.. +. +++++. .. .....+++.+.-+++..++ .+ |. ++++.+..+
T Consensus 250 lRiG~ii~p~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~Q~a~~~~l---~~-~~~~~~~~~~~~~~~ 312 (433)
T PRK06855 250 SRCGWIEVYNADKDEVFKKYINSIL-------NA------KMIEVCSTTLPQMAIPRIM---SH-PEYKNYLKERNKRYE 312 (433)
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHH-------Hh------hccccCCChHHHHHHHHhh---cC-CcHHHHHHHHHHHHH
Confidence 6777762 21 111110 00 0011133444444443333 22 11 556667777
Q ss_pred HHHHHHHHHHHccCCc
Q psy8733 401 QKSVLLYQEIDNSDKF 416 (621)
Q Consensus 401 ~la~~L~e~L~~~~g~ 416 (621)
++.+.+++.|++++|+
T Consensus 313 ~r~~~~~~~L~~~~~~ 328 (433)
T PRK06855 313 KRSNIAYEKLKDVPGL 328 (433)
T ss_pred HHHHHHHHHHhcCCCe
Confidence 7788888888876544
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.014 Score=63.32 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=55.7
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC--Cc----cc------ccccc--eEEeccccc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS--RK----FD------VSKFG--VIIAGAQKN 329 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~--~p----ID------v~~~g--vl~asaqK~ 329 (621)
+++++|++|+-.|+||...+. +++++++++|+|-+=.-.. .+ ++ .+.++ +++.|-=|.
T Consensus 154 ~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~ 233 (374)
T PRK05839 154 QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKR 233 (374)
T ss_pred ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccc
Confidence 368999999889999999884 2357899999998643211 01 11 12334 778889999
Q ss_pred cCCCc--cEEEEEchhHHhhh
Q psy8733 330 IGPAG--ITVVIVREDLLEYA 348 (621)
Q Consensus 330 lGP~G--lg~livr~~ll~~~ 348 (621)
+|.+| +|.++.++++.+++
T Consensus 234 ~~~~GlRiG~ii~~~~~~~~~ 254 (374)
T PRK05839 234 SSAPGLRSGFIAGDASILKKY 254 (374)
T ss_pred cCCccceeEEEecCHHHHHHH
Confidence 98777 78888888887755
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.053 Score=60.07 Aligned_cols=124 Identities=14% Similarity=0.263 Sum_probs=78.4
Q ss_pred CCceEEEEecccccccccc-cc--------ccccCCCcEEEecccccCCC---ccccccc----ceEEeccccccCC-Cc
Q psy8733 272 PEASYLYYCDNETVDGVEF-NY--------IPDSQGIPLVSDMSSNFLSR---KFDVSKF----GVIIAGAQKNIGP-AG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~-p~--------i~~~~g~llvvDavSs~G~~---pIDv~~~----gvl~asaqK~lGP-~G 334 (621)
++.++|.+..+...+|+.. |. +++++|+++|+|=+++-.++ +.-.+.+ |++++ -|.+|+ -=
T Consensus 197 ~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~--gK~l~~G~p 274 (421)
T PRK09792 197 KQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTM--AKSLAGGMP 274 (421)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEe--ehhhcCCCc
Confidence 4577888877777778765 31 45689999999999773322 2222333 24444 588851 11
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+ ....+++...|+ ...+..++++++.+. ...++.+++.+++.+.|+++
T Consensus 275 igav~~~~~i~~~~~~-----------~~~~~T~~gnpl-~~aaa~a~l~~l~~~----~~~~~~~~~g~~l~~~l~~l 337 (421)
T PRK09792 275 LSGVVGNANIMDAPAP-----------GGLGGTYAGNPL-AVAAAHAVLNIIDKE----SLCERANQLGQRLKNTLIDA 337 (421)
T ss_pred eEEEEEcHHHHhccCC-----------CCcCCCCCCCHH-HHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHH
Confidence 7888889888764421 112456655554 455666788988764 34556667777777777654
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0035 Score=67.31 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=59.5
Q ss_pred CCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccc--cCCCcccccccceEEeccccccC--CCccEEEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSN--FLSRKFDVSKFGVIIAGAQKNIG--PAGITVVI 339 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs--~G~~pIDv~~~gvl~asaqK~lG--P~Glg~li 339 (621)
.++++||+|++=.-.|+.+.+.|+ +++++|++++||-+=+ ...+|++--. |+++-|.-||+| -..+|.++
T Consensus 143 aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGA-DIVvHS~TK~igGhGt~iGG~i 221 (426)
T COG2873 143 AIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGA-DIVVHSATKYIGGHGTAIGGVI 221 (426)
T ss_pred HhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCC-CEEEEeecccccCCccccceEE
Confidence 488999999998888888888886 5678999999997644 4556766432 599999999996 66688888
Q ss_pred EchhH
Q psy8733 340 VREDL 344 (621)
Q Consensus 340 vr~~l 344 (621)
|...-
T Consensus 222 VD~G~ 226 (426)
T COG2873 222 VDGGK 226 (426)
T ss_pred EeCCc
Confidence 87654
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.038 Score=61.75 Aligned_cols=125 Identities=13% Similarity=0.175 Sum_probs=74.4
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccCC--Cc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIGP--AG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lGP--~G 334 (621)
++.+|.+-..-...|+..| + +++++|+++|+|=+|+ +|-. -.-.+.+| +++. =|.+|- --
T Consensus 224 ~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~--gK~lg~G~~P 301 (442)
T TIGR03372 224 DVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCL--AKALGGGVMP 301 (442)
T ss_pred cEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeee--hhhhcCCccc
Confidence 4566665555455577666 1 4568999999999985 4311 11122333 5554 588851 11
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.. .| + ...++++.. ..+.++..++|+.+.++ + +.++.+++.++|++.|.++
T Consensus 302 igavv~~~~i~~~~~~-~~-~-------~~~~T~~gn-p~~~Aaa~a~L~~i~~~-~---l~~~~~~~G~~l~~~L~~l 366 (442)
T TIGR03372 302 IGATIATEAVFSVLFD-NP-F-------LHTTTFGGN-PLACAAALATINELLEK-N---LPAQAAIKGDFLLDGFQQL 366 (442)
T ss_pred ceEEEecHHHHHhhhc-cC-c-------cccCCCCCC-HHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHH
Confidence 6778889888765421 11 0 113444333 34556667789999876 3 4456677778888887764
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.09 Score=57.47 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=73.4
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccccCCC---ccc--cccc--ceEEeccccccCC-Cc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSR---KFD--VSKF--GVIIAGAQKNIGP-AG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~---pID--v~~~--gvl~asaqK~lGP-~G 334 (621)
.+.++|.+..+.+..|+..+. +++++|+++|+|=+++-..+ +.- ...+ |++.+ =|.+|| -=
T Consensus 166 ~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~--sK~l~~G~p 243 (382)
T PLN00144 166 GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTL--AKPLAGGLP 243 (382)
T ss_pred CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEe--cccccCCcc
Confidence 457777777665555665442 35689999999999873322 111 1111 24444 488852 11
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.++.++++.+.+.+ ....+++..+|. ...+..++|+++.+. + ..++.+++.+++++.|.+
T Consensus 244 ig~v~~~~~~~~~~~~-----------~~~~~T~~~~pl-~~aaa~a~l~~i~~~-~---~~~~~~~~g~~l~~~l~~ 305 (382)
T PLN00144 244 IGAVLVTEKVASAINP-----------GDHGSTFAGGPL-VCNAALAVLDKISKP-G---FLASVAKKGEYLRELLRR 305 (382)
T ss_pred eEEEEEcHHHHhccCC-----------CCCCCCCCCCHH-HHHHHHHHHHHHhhc-h---HHHHHHHHHHHHHHHHHH
Confidence 8899999888765432 012345554444 456777889999763 3 344555566666666554
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00013 Score=78.47 Aligned_cols=79 Identities=16% Similarity=0.339 Sum_probs=35.1
Q ss_pred CCCCCceEEEEec--ccccccccccc-------ccccCCCcEEEecccc---------cCCCcccccc-----cceEEec
Q psy8733 269 NRDPEASYLYYCD--NETVDGVEFNY-------IPDSQGIPLVSDMSSN---------FLSRKFDVSK-----FGVIIAG 325 (621)
Q Consensus 269 ~i~~~t~~V~~th--nET~tGv~~p~-------i~~~~g~llvvDavSs---------~G~~pIDv~~-----~gvl~as 325 (621)
+++++|.++..+| |-.+.|..... +++++++++++|+.|. +..+| ++.+ .|++++|
T Consensus 132 AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep-~v~~~~~~GaDlV~fS 210 (367)
T PF03841_consen 132 AITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEP-TVQEYLAAGADLVTFS 210 (367)
T ss_dssp -----------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCCCT-SEEEEE
T ss_pred cccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCcccc-HHHHHhhcCCCEEEEE
Confidence 5788999998887 33455544332 4568999999999982 22322 3333 2499999
Q ss_pred cccccC-CCccEEEEEchhHHhhhC
Q psy8733 326 AQKNIG-PAGITVVIVREDLLEYAL 349 (621)
Q Consensus 326 aqK~lG-P~Glg~livr~~ll~~~~ 349 (621)
+-|.|| |. .|+++-|++++++++
T Consensus 211 GdKlLGGPQ-aGiI~Gkk~lI~~lk 234 (367)
T PF03841_consen 211 GDKLLGGPQ-AGIIVGKKELIEKLK 234 (367)
T ss_dssp TTSSSSS-S--EEEEEEHHHHHHHH
T ss_pred CCCcCCCCC-eEEEEeCHHHHHHHh
Confidence 999996 77 699999999999875
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0058 Score=68.56 Aligned_cols=127 Identities=14% Similarity=0.172 Sum_probs=79.2
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccc---cCCCc----ccc---------cccc--eEEec
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN---FLSRK----FDV---------SKFG--VIIAG 325 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs---~G~~p----IDv---------~~~g--vl~as 325 (621)
.++++|.+|+-.|+||...+. +++++++++|+|=+-+ +...+ +.+ +..+ +++.|
T Consensus 190 ~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S 269 (468)
T PLN02450 190 LKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYS 269 (468)
T ss_pred CCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEe
Confidence 478999999888999999884 2457899999998765 22211 111 1233 77888
Q ss_pred cccccCCCc--cEEEEEchhH-HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH---HHhhCCHHHHHHHH
Q psy8733 326 AQKNIGPAG--ITVVIVREDL-LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW---IKRQGGLAKMEQNS 399 (621)
Q Consensus 326 aqK~lGP~G--lg~livr~~l-l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~---i~~~gGl~~i~~r~ 399 (621)
-=|.+|.+| +|+++..++. .+.+.. ...++..+...-+++..+|+- ..+. ++...++.
T Consensus 270 ~SK~~~l~GlRiG~li~~~~~l~~~~~~--------------~~~~~~~s~~~Q~a~~~~L~~~~~~~~~--l~~~~~~l 333 (468)
T PLN02450 270 LSKDLGLPGFRVGAIYSNDEMVVSAATK--------------MSSFGLVSSQTQYLLSALLSDKKFTKNY--LEENQKRL 333 (468)
T ss_pred ccccCCCCCccEEEEEECCHHHHHHHHH--------------HhhcCCCCHHHHHHHHHHhCCchhHHHH--HHHHHHHH
Confidence 999999888 8888887554 332211 011222344444444444421 1111 45566777
Q ss_pred HHHHHHHHHHHHccC
Q psy8733 400 LQKSVLLYQEIDNSD 414 (621)
Q Consensus 400 ~~la~~L~e~L~~~~ 414 (621)
+++.+.+.+.|++++
T Consensus 334 ~~rr~~l~~~L~~~g 348 (468)
T PLN02450 334 KQRQKKLVSGLEAAG 348 (468)
T ss_pred HHHHHHHHHHHHHcC
Confidence 778888888888773
|
|
| >KOG2467|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0032 Score=67.39 Aligned_cols=284 Identities=13% Similarity=0.156 Sum_probs=161.2
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHH-HHHHHHHHHhCCC-CCCEEEEEcCCcchh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINN-DTQAALRELLNVP-NNYKILFLQGGGTGM 127 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~-~ar~~La~Ll~~p-~~yeI~f~~gggT~~ 127 (621)
.+-+.+.|.---.+.+|+|++...|+|-.+.|..- +.+.-+.+|.+.++ -++++-.+.|+.. +.+-|-.-+=||+-
T Consensus 40 ~~gieLIaSENFts~aVmeAlGS~ltNKYSEGyPG-~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSP- 117 (477)
T KOG2467|consen 40 KRGIELIASENFTSRAVMEALGSCLTNKYSEGYPG-ARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSP- 117 (477)
T ss_pred hcceeEeecccchHHHHHHHHhHHhhcccccCCCc-ccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCc-
Confidence 34566777777788999999999999866666532 12223567766554 4677888999994 44555555556666
Q ss_pred hhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccc
Q psy8733 128 FAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 128 ~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
.|+-.+..=++++|+|.=++. +.| |+.+|....-.++.-++-+...+
T Consensus 118 -----ANfavYtall~Ph~RiMGLDL--------------P~G--------GHLsHGy~T~~kkISa~SiyFeS------ 164 (477)
T KOG2467|consen 118 -----ANFAVYTALLKPHERIMGLDL--------------PSG--------GHLSHGYQTPTKKISATSIYFES------ 164 (477)
T ss_pred -----hhhHHHhhhcCCCCeeeeccC--------------CCC--------CccccccccCCceeeeeeeeccc------
Confidence 477666555777777754431 222 33333221111111111111110
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
+|- .-++ ..++-.....++.+..-.++++..-....+
T Consensus 165 mPY----kv~~-------------------------------------~TG~IDYD~Le~~A~~frPk~iiaG~SaY~-- 201 (477)
T KOG2467|consen 165 MPY----KVDP-------------------------------------STGYIDYDKLEKTATLFRPKLIIAGTSAYS-- 201 (477)
T ss_pred Cce----eeCC-------------------------------------CCCceehHHHHHHHHhcCCcEEEeccccch--
Confidence 000 0000 111100101111122223444433221111
Q ss_pred ccccc-----ccccCCCcEEEeccc-----ccCCCcccccccceEEecccccc-CCCccEEEEEchhHHhhhCCCC--Cc
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSS-----NFLSRKFDVSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT--PT 354 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavS-----s~G~~pIDv~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~--P~ 354 (621)
-..|. |+++.|+.+++||+. +.+..|=+++-.|++.++.||.| ||.| |+++.|+..-. ..+.. +.
T Consensus 202 R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRGPRg-~mIFyRkGvk~-~~~k~g~~i 279 (477)
T KOG2467|consen 202 RLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRGPRG-AMIFYRKGVKS-IKPKQGKEI 279 (477)
T ss_pred hhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccCCcc-eeEEEeccCCc-CCCCCCCcc
Confidence 12232 566789999999975 35667778888899999999999 8998 45555655422 11111 22
Q ss_pred eeecccccc---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 355 VFHFKINAD---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 355 ~ld~~~~~~---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
..|+..... -++.-+-|--..|.+++.||+....- ......++..+.++.|-+.|.+.+
T Consensus 280 ~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tp-efk~Yq~qV~~Nakala~~l~~~G 341 (477)
T KOG2467|consen 280 LYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTP-EFKEYQKQVLKNAKALASALISRG 341 (477)
T ss_pred eechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334332111 12334566667899999999988765 577888888888888988888875
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.11 Score=58.06 Aligned_cols=121 Identities=17% Similarity=0.248 Sum_probs=73.0
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCCc--cccccc----ceEEeccccccC-CCcc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSRK--FDVSKF----GVIIAGAQKNIG-PAGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~p--IDv~~~----gvl~asaqK~lG-P~Gl 335 (621)
+..+|.+-..-...|+..| + +++++|+++|+|=+++ +|..- +-.+.+ |++.+| |.+| --.+
T Consensus 221 ~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~--K~l~~G~p~ 298 (441)
T PRK05769 221 EVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLA--KAIAGGLPL 298 (441)
T ss_pred ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEc--ccccCCccc
Confidence 4555554444444577666 2 3568999999999987 43211 122333 356655 8885 1227
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|.++.++++.+.. +. ...++++- +....++..++|+.+.+ ++.++.+++.++|++.|.++
T Consensus 299 gav~~~~~i~~~~----~~--------~~~~T~~g-~p~~~aaa~a~L~~l~~-----~~~~~~~~~g~~l~~~L~~l 358 (441)
T PRK05769 299 GAVIGRAELMFLP----PG--------SHANTFGG-NPVAAAAALATLEELEE-----GLLENAQKLGEYLRKELKEL 358 (441)
T ss_pred EEEEEehhhhhcC----CC--------CCCCCCCc-CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 8888998875321 10 12345543 33445666678888864 44566777778888888764
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.014 Score=65.20 Aligned_cols=110 Identities=10% Similarity=0.094 Sum_probs=62.2
Q ss_pred ccccCCCcEEEecccccCCC-----------ccccc-------cc-ceEEeccccccC-CCccEEEEEc-hhHHhhhCCC
Q psy8733 293 IPDSQGIPLVSDMSSNFLSR-----------KFDVS-------KF-GVIIAGAQKNIG-PAGITVVIVR-EDLLEYALPI 351 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~-----------pIDv~-------~~-gvl~asaqK~lG-P~Glg~livr-~~ll~~~~~~ 351 (621)
+++++|+++|.|++..++.. .-++. .+ |.+++|.+|.++ |.| |++..+ +++.++++..
T Consensus 206 lA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~ 284 (460)
T PRK13237 206 LCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKEL 284 (460)
T ss_pred HHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHh
Confidence 56789999999999999833 12221 23 489999999996 665 445554 5555665543
Q ss_pred CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 352 ~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.| +.-.+|+..+.--+.+++.+|+...+. ...++-.+..++|-+.|++.|
T Consensus 285 ~~~~-------eG~~tygg~~grd~~alAvgl~E~~~~----~y~~~ri~~~~~l~~~L~~~G 336 (460)
T PRK13237 285 VVVY-------EGMPSYGGMAGRDMEAMAIGIEESVQY----EYIEHRVGQVRYLGEKLLAAG 336 (460)
T ss_pred cccc-------CCCcCCCChhhhHHHHHHhHHHhhchH----HHHHHHHHHHHHHHHHHHHCC
Confidence 2211 111233333333445555555433332 222333345567778887764
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.026 Score=63.08 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=84.8
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Ccccccccc----eEEecccccc--C-C
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNI--G-P 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~l--G-P 332 (621)
++..+|.+-......|+..| + +++++|+++|+|=+|+ +|- ..+-.+.+| +++.| |.+ | .
T Consensus 217 ~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~g--K~l~gG~~ 294 (445)
T PRK09221 217 STIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFA--KGLTNGAI 294 (445)
T ss_pred CcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEec--cccccCcc
Confidence 35666666666666788777 2 4568999999999974 542 233334443 66665 555 5 4
Q ss_pred CccEEEEEchhHHhhhCCCCCce-eeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AGITVVIVREDLLEYALPITPTV-FHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~-ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.+..++++.+.+... |.. .. ....++++++|+....++ ++|+.+.++ + +.++.+++.+++++.|+
T Consensus 295 P-i~av~~~~~i~~~~~~~-~~~~~~----~~~~~T~~~~pl~~aaa~-a~L~~i~~~-~---l~~~~~~~g~~l~~~l~ 363 (445)
T PRK09221 295 P-MGAVIASDEIYDAFMQG-PEYAIE----FFHGYTYSAHPVACAAGL-ATLDIYREE-D---LFERAAELAPYFEDAVH 363 (445)
T ss_pred c-ceeeEEcHHHHHhhccC-cccccc----cccccCCCcCHHHHHHHH-HHHHHHHhc-c---HHHHHHHHHHHHHHHHH
Confidence 4 67788899987765321 111 11 113467777777655554 899999876 3 46788888999999888
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
++.
T Consensus 364 ~l~ 366 (445)
T PRK09221 364 SLK 366 (445)
T ss_pred hhc
Confidence 763
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.077 Score=59.60 Aligned_cols=125 Identities=14% Similarity=0.183 Sum_probs=77.0
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCC--Cc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGP--AG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP--~G 334 (621)
++.+|.+-......|+..|- +++++|+++|+|=+|+ +|-. -.-.+.+ |+++. -|.+|- --
T Consensus 231 ~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~--gK~lggG~~P 308 (459)
T PRK11522 231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCL--AKALGGGVMP 308 (459)
T ss_pred cEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEe--chhhhCCCcc
Confidence 45566655555556777661 4568999999999985 4310 0111223 35544 488851 12
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.... .| + ...++++..| .+..+..++|+.+.++ .+.++.+++.++|++.|.++
T Consensus 309 igav~~~~~i~~~~~~-~~-~-------~~~~T~~gnp-~~~Aaala~L~~i~~~----~l~~~~~~~g~~l~~~L~~l 373 (459)
T PRK11522 309 IGATIATEEVFSVLFD-NP-F-------LHTTTFGGNP-LACAAALATINVLLEQ----NLPAQAEQKGDYLLDGFRQL 373 (459)
T ss_pred ceeEEEcHHHHHHhcc-CC-c-------ccCCCCCCCH-HHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHH
Confidence 7889999988764321 11 0 1234454333 4556666789999775 35678888889999988875
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.031 Score=61.39 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=78.7
Q ss_pred CCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cC-------CCcccccccceEEeccccccC-C
Q psy8733 271 DPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FL-------SRKFDVSKFGVIIAGAQKNIG-P 332 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G-------~~pIDv~~~gvl~asaqK~lG-P 332 (621)
.+++++|.+-......|+..| + +++++|+++|+|-+++ +| +...++ +-|+++.| |.+| .
T Consensus 177 ~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv-~PDi~t~g--K~lg~G 253 (395)
T PRK03715 177 TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGI-EPDIMTLG--KGIGGG 253 (395)
T ss_pred CCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCC-CCceeeeh--hhhhCC
Confidence 356788888888777788765 2 4568999999999987 21 111122 12466665 9994 1
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
--+|.+..++++.. . .+. ...++|+- +.....+..++|+.+.+. .+.++.+++.++|++.|.+
T Consensus 254 ~p~~av~~~~~i~~-~---~~~--------~~~~T~~g-~pl~~aaala~L~~l~~~----~l~~~~~~~g~~l~~~L~~ 316 (395)
T PRK03715 254 VPLAALLAKAEVAV-F---EAG--------DQGGTYNG-NPLMTAVGVAVISQLLAP----GFLEGVRARGEYLKEKLLE 316 (395)
T ss_pred cceEEEEEcccccc-c---cCC--------CcCCCCCC-CHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHH
Confidence 22777788888741 1 111 12345543 344567777889998764 3566777788888888876
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 317 l 317 (395)
T PRK03715 317 L 317 (395)
T ss_pred H
Confidence 4
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.18 Score=55.94 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=75.9
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCCC---cccccccce--EEeccccccCCCc--cE
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLSR---KFDVSKFGV--IIAGAQKNIGPAG--IT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~~---pIDv~~~gv--l~asaqK~lGP~G--lg 336 (621)
+..+|.+-..-...|+..| + +++++|+++|+|=+++-..+ .+-.+.+|+ =+.+-=|.+| .| +|
T Consensus 207 ~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg-~G~pig 285 (433)
T PRK08117 207 EVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIA-SGLPLS 285 (433)
T ss_pred cEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhcc-CCCcce
Confidence 4555554444444566666 2 45689999999999873212 111233331 1245569997 35 78
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.++.++++.+.... ....++++ .|.....+..++|+.+.+. .+.++.+++.+++++.|+++
T Consensus 286 av~~~~~i~~~~~~-----------~~~~~T~~-~np~~~aaa~a~L~~l~~~----~l~~~~~~~g~~l~~~L~~l 346 (433)
T PRK08117 286 AVVASKELMEQWPL-----------GSHGTTFG-GNPVACAAALATLEVIKEE----KLLDNANEMGAYALERLEVL 346 (433)
T ss_pred eEEEcHHHHhhccC-----------CCCCCCCC-cCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHH
Confidence 89999988765421 01233443 3555677778889988654 34556677777888887765
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.32 Score=54.43 Aligned_cols=123 Identities=15% Similarity=0.297 Sum_probs=78.0
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCCCc---ccccccc----eEEeccccccC-CCcc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRK---FDVSKFG----VIIAGAQKNIG-PAGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~p---IDv~~~g----vl~asaqK~lG-P~Gl 335 (621)
+..++.+=......|+..|- +++++|+++|+|=+|+=.++. +-++.+| +++.| |.+| --=+
T Consensus 222 ~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~a--K~ig~G~Pl 299 (447)
T COG0160 222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLA--KSLGGGLPL 299 (447)
T ss_pred ceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEec--ccccCCCce
Confidence 45555554444555777662 457899999999999844332 3334444 66665 8884 2227
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.++.|+++.+ .. |. ....+|+--| .+..+..++|+.|.++ ++.+|..++.++|++.|.++.
T Consensus 300 ~avv~r~ei~~-~~---~g--------~~~~Tf~GNp-va~Aaa~AvL~vie~e----~L~~~a~~~G~~l~~~L~~l~ 361 (447)
T COG0160 300 SAVVGRAEIMD-WP---PG--------GHGGTFGGNP-VACAAALAVLDVIEEE----NLLERAAELGEYLRDRLEELQ 361 (447)
T ss_pred eEEeccHHhcc-cC---Cc--------ccCCCCCcCH-HHHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHHHHH
Confidence 88999988864 21 11 1123343223 3455666788888775 567778888899999998764
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.13 Score=55.85 Aligned_cols=51 Identities=29% Similarity=0.332 Sum_probs=41.6
Q ss_pred cHHH-HHHHHHccCccccCC--CCCCccceeeccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 558 DELF-LKEAKAHNMIQLKGH--RLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 558 ~~~~-~~~~~~~~i~~~~g~--~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
+..| -+.++|+.++.+-|- +-.|=+||++ +++.+.++.-...|++|..+|+
T Consensus 382 D~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i--~~~~~~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 382 DVDFCQKLAREESVICLPGQAFGLKNWLRIVI--TVEEEMLEEAFSRIKEFCDRHS 435 (447)
T ss_pred cHHHHHHHhhhcceEEeccccccCCCeEEEEE--ccChHHHHHHHHHHHHHHHhhh
Confidence 4456 577889999977665 4588899998 6788888888999999999998
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.047 Score=59.06 Aligned_cols=137 Identities=11% Similarity=0.119 Sum_probs=86.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccc----cCCCccccc-------ccceEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN----FLSRKFDVS-------KFGVIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs----~G~~pIDv~-------~~gvl~asaqK~l 330 (621)
.+...++..+|+-.|.+|..+.. ++++||+++|.|=.-+ .|+..+.+. +.-+.++|+-|.+
T Consensus 155 ~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtF 234 (388)
T COG1168 155 VDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTF 234 (388)
T ss_pred hcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccc
Confidence 34557899999999999999873 4678999999997654 232333332 2238888889999
Q ss_pred CCCc--cEEEEEchhHH-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8733 331 GPAG--ITVVIVREDLL-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY 407 (621)
Q Consensus 331 GP~G--lg~livr~~ll-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~ 407 (621)
.-+| .+.++++++.+ .+. ++... ....+-||.+++.|..+|.+.=..- ++++.+..+...+++.
T Consensus 235 NlaGL~~a~~Ii~n~~lr~~~---------~~~l~--~~~~~~~n~lg~~A~~aAY~~G~~W--Ld~L~~yl~~N~~~~~ 301 (388)
T COG1168 235 NLAGLKCAYIIISNRELRAKF---------LKRLK--RNGLHGPSALGIIATEAAYNQGEPW--LDELLEYLKDNRDYVA 301 (388)
T ss_pred cchhhhheeEEecCHHHHHHH---------HHHHH--HhcCCCCchHHHHHHHHHHHhchHH--HHHHHHHHHHHHHHHH
Confidence 7666 45566665543 221 11111 2234567888888877776532211 5555666666667777
Q ss_pred HHHHc-cCCcccC
Q psy8733 408 QEIDN-SDKFYEC 419 (621)
Q Consensus 408 e~L~~-~~g~~~~ 419 (621)
+.+.+ +|++...
T Consensus 302 ~~l~~~~P~v~v~ 314 (388)
T COG1168 302 DFLNKHLPGVKVT 314 (388)
T ss_pred HHHHhhCCCcEEe
Confidence 77766 4555443
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.24 Score=56.40 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=78.1
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEeccc-ccCCC--ccccccc----ceEEeccccccC--CCc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSS-NFLSR--KFDVSKF----GVIIAGAQKNIG--PAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavS-s~G~~--pIDv~~~----gvl~asaqK~lG--P~G 334 (621)
+..+|.+=..-...|+..| + +++++|+++|+|=++ ++|-. -.-.+.+ |++++| |.+| ---
T Consensus 260 ~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~lggG~~P 337 (504)
T PLN02760 260 TIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLA--KALSSAYMP 337 (504)
T ss_pred ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEec--ccccCCccc
Confidence 3455554444444577766 2 467899999999999 46431 1111223 355554 8884 112
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+..+.. ......++|+..|+ +..+..++|+.+.++ ++.++.+++.++|++.|.++
T Consensus 338 igAv~~~~~i~d~~~~~~~~~----~~~~h~~T~~gnPl-~~Aaala~Le~i~~~----~l~~~~~~~g~~l~~~L~~l 407 (504)
T PLN02760 338 IGAVLVSPEISDVIHSQSNKL----GSFAHGFTYSGHPV-SCAVALEALKIYKER----NIPEHVNKIAPRFQDGIKAF 407 (504)
T ss_pred cceEeecHHHHhhhhcccccc----cCcccCCCCCCCHH-HHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHH
Confidence 677899999877653211100 00113466766444 455666779998875 35677778888888888764
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.11 Score=54.86 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=46.1
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCC-Ccccccccc--eEEeccccccCCCc--cEEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS-RKFDVSKFG--VIIAGAQKNIGPAG--ITVVI 339 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~-~pIDv~~~g--vl~asaqK~lGP~G--lg~li 339 (621)
+++.+.+|+-.|.||...+. +++++++++|+|-+=.-.. ..-..+ .+ +++.|-=|.+|.+| +|+++
T Consensus 117 ~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~-~~~vi~~~S~SK~~~l~GlRiG~~v 195 (311)
T PRK08354 117 RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPE-GENIIKLRTFTKSYGLPGIRVGYVK 195 (311)
T ss_pred CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccC-CCcEEEEeccHhhcCCccceeeeee
Confidence 45678888888999998883 2456899999998752211 110111 23 66778899999888 58777
Q ss_pred E
Q psy8733 340 V 340 (621)
Q Consensus 340 v 340 (621)
.
T Consensus 196 ~ 196 (311)
T PRK08354 196 G 196 (311)
T ss_pred e
Confidence 6
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.013 Score=68.77 Aligned_cols=137 Identities=7% Similarity=-0.005 Sum_probs=83.4
Q ss_pred ceEEEEecccccccccccc--c----cccCCCcEEEecccccCCC---c---------ccccccc----eEEeccccccC
Q psy8733 274 ASYLYYCDNETVDGVEFNY--I----PDSQGIPLVSDMSSNFLSR---K---------FDVSKFG----VIIAGAQKNIG 331 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~--i----~~~~g~llvvDavSs~G~~---p---------IDv~~~g----vl~asaqK~lG 331 (621)
.+++.+| +.|=.|+..++ | ++.++ ++++|-+-. ++. | ++.. -| +++-|.||.|+
T Consensus 283 ~k~vvit-~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhg-ah~~F~p~~~~~p~~al~~G-aD~p~i~v~QStHKtL~ 358 (720)
T PRK13578 283 FRLAVIQ-LGTYDGTIYNARQVVDKIGHLCD-YILFDSAWV-GYEQFIPMMADCSPLLLELN-ENDPGIFVTQSVHKQQA 358 (720)
T ss_pred ceEEEEE-CCCCcceeecHHHHHHHhhccCC-cEEEeCcch-hhhccCcccccCChhhhhcC-CCCCCeEEEEChhhcch
Confidence 5666665 45788999996 2 44567 899995432 111 2 1111 13 89999999995
Q ss_pred -CCccEEEEEchhHHhhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 332 -PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 332 -P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
-+..+.+-++++.++.-+ .+++.....+.-.++ -+|+...+++|..+..++....| +.+.++..+++..+|+
T Consensus 359 alTQaS~LHvk~~~i~g~~----~~v~~~r~~~al~m~qSTSPsY~LmASLDva~~~m~~~~G-~~l~~~~i~~a~~~R~ 433 (720)
T PRK13578 359 GFSQTSQIHKKDNHIKGQA----RYCPHKRLNNAFMLHASTSPFYPLFAALDVNAKMHEGESG-RRLWMECVKLGIEARK 433 (720)
T ss_pred hhhhHhhhhcCCccccccc----ccCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHH
Confidence 887888887765432100 111111111101111 25667777778888888876435 5677778888899999
Q ss_pred HH-HccCCcccC
Q psy8733 409 EI-DNSDKFYEC 419 (621)
Q Consensus 409 ~L-~~~~g~~~~ 419 (621)
.| +.+++|...
T Consensus 434 ~l~~~~~~~~~~ 445 (720)
T PRK13578 434 LILARCKLIRPF 445 (720)
T ss_pred HHHHhCCCeeec
Confidence 88 777766544
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.34 Score=54.14 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=74.8
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCc--cccccc----ceEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRK--FDVSKF----GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~p--IDv~~~----gvl~asaqK~lGP~G- 334 (621)
+++.+|.+-..-...|+..|- +++++|+++|+|=+++ +|..- .-.+.+ |+++. -|.+| .|
T Consensus 206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~--gK~l~-~G~ 282 (445)
T PRK08593 206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSF--GKSLA-GGM 282 (445)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeee--ccccc-CCc
Confidence 356666655554555776551 4568999999999974 53211 111222 34544 47774 22
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++.+.+.+ + ....++.-+| ....+..++|+.+.++ ++.++.+++.++|++.|.++
T Consensus 283 p~gav~~~~~i~~~~~~--~---------~~~~T~~~~p-l~~aaa~a~l~~l~~~----~l~~~~~~~g~~l~~~L~~l 346 (445)
T PRK08593 283 PMSAIVGRKEIMESLEA--P---------AHLFTTGANP-VSCAAALATIDMIEDE----SLLQRSAEKGEYARKRFDQW 346 (445)
T ss_pred ccEEEEEcHHHHhhhcc--C---------CCCCCCCCCH-HHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHH
Confidence 7889999998765421 1 1123444333 4566777889998775 45666777777888877764
|
|
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=61.41 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=39.5
Q ss_pred HHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHH-HHHHHHc
Q psy8733 559 ELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFM-KEFRHKH 609 (621)
Q Consensus 559 ~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~-~~~~~~~ 609 (621)
+++-+.++++||..+.|-.. ++|+.++-.+|+|+++.++.++ ++|....
T Consensus 321 ~~l~~~~~k~gi~lm~~~s~--r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q~ 370 (384)
T KOG1368|consen 321 EELCKFLEKNGILLMGGASR--RIRIVLHHQVTDEDVEYVKSVLSKKFLKQL 370 (384)
T ss_pred HHHHHHHHHCCeEEeecccc--ceEEEEEEecCHHHHHHHHHHHHHHHHhhc
Confidence 34677889999998776433 3999999999999999999999 6666543
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.19 Score=55.61 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=73.5
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCCCcccc---cccc--eEEeccccccCCCc--cE
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRKFDV---SKFG--VIIAGAQKNIGPAG--IT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~pIDv---~~~g--vl~asaqK~lGP~G--lg 336 (621)
+..+|.+.......|+..+- +++++|+++|+|=+++-..+.=.+ ..++ .-+.+-=|.+| .| +|
T Consensus 187 ~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~-~G~pig 265 (408)
T PRK04612 187 DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALG-GGFPIG 265 (408)
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhc-CCCceE
Confidence 44555544444444555431 456899999999998733221111 1112 22334458886 23 78
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.++.++++.+.+.. ....+++. .+.....+..++|+.+.+. ++.++.+++.+++++.|.++
T Consensus 266 a~~~~~~~~~~~~~-----------~~~~~t~~-~~p~~~aaa~a~L~~~~~~----~l~~~~~~~g~~l~~~l~~l 326 (408)
T PRK04612 266 AMLAGPKVAETMQF-----------GAHGTTFG-GNPLAAAVARVALRKLASP----QIAANVARQSAALRAGLEAL 326 (408)
T ss_pred EEEECHHHHhhhcC-----------CCcCCCCC-CCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHH
Confidence 88888887654421 01223443 4456667777888988765 45667777788888888765
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.42 Score=53.35 Aligned_cols=122 Identities=14% Similarity=0.258 Sum_probs=75.9
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lGP~G- 334 (621)
.+..+|.+-......|+..+- +++++|+++|+|=+++ +|- ..+-.+.+| +++. =|.+|- |
T Consensus 205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~~-G~ 281 (442)
T TIGR00709 205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVM--SKAVGG-GL 281 (442)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEE--cccccC-Cc
Confidence 356666666666666766541 4568999999999987 542 222233343 5554 488842 2
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..+++ .+... +. ...++++ .|..+..+..++|+.+.++ + +.++.+++.++|++.|+++
T Consensus 282 Pigav~~~~~-~~~~~---~~--------~~~~T~~-gnpla~aaa~a~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l 344 (442)
T TIGR00709 282 PLAVLLIAPE-FDAWQ---PA--------GHTGTFR-GNQLAMVTGTEALNYWKDD-N---LAQNAQERGERITSFLDDM 344 (442)
T ss_pred ccEEEEEchH-HhccC---CC--------cCCCCCC-cCHHHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHHH
Confidence 788888887 43221 10 1234554 4445567778889988775 4 4456777778888888764
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >KOG1402|consensus | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.17 Score=53.90 Aligned_cols=252 Identities=16% Similarity=0.228 Sum_probs=148.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhcc
Q psy8733 61 KLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSM 140 (621)
Q Consensus 61 ~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~ 140 (621)
...+-+++++++...... ++.| ..+.+.+.+-.+.+.+||+-. .|+-| ++|-++.|. |+-|.+.|-
T Consensus 75 hchpki~~aLqeq~~kLt--------lssr-afYnd~~~~f~~~vt~lf~~~---kvlpm-nTGaEa~Et-a~KLaR~wg 140 (427)
T KOG1402|consen 75 HCHPKIIKALQEQADKLT--------LSSR-AFYNDVLGEFAEYVTKLFGYD---KVLPM-NTGAEAVET-ACKLARKWG 140 (427)
T ss_pred CCCHHHHHHHHHHHhHhh--------hhhH-HHhhhhHHHHHHHHHHhcCcc---eeeec-ccchhHHHH-HHHHHHHHH
Confidence 467889999998864321 2222 234567778888899999864 36666 667887776 666655432
Q ss_pred ----CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCC
Q psy8733 141 ----NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNR 216 (621)
Q Consensus 141 ----~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~ 216 (621)
++|++..|++.- .-|+.+ .....|..+.=...| +++|-- -
T Consensus 141 y~~K~ip~nka~il~~----------~~nFhG--rT~~ais~s~d~ds~----~~fgp~--------------------~ 184 (427)
T KOG1402|consen 141 YRKKNIPKNKAKILSA----------ENNFHG--RTLGAISLSTDPDSW----DGFGPF--------------------L 184 (427)
T ss_pred HhhccCCccceeEEEe----------cccccC--ceeeeEEecCCcchh----hccCCC--------------------C
Confidence 567666666543 235542 222222211111112 233310 0
Q ss_pred CCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc----
Q psy8733 217 DPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY---- 292 (621)
Q Consensus 217 ~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~---- 292 (621)
...+++++|.+ .++.+....+++.+...+-.-.--.|++.|-
T Consensus 185 P~~~~~v~Y~d----------------------------------~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL 230 (427)
T KOG1402|consen 185 PGVVDKVPYGD----------------------------------AEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYL 230 (427)
T ss_pred CCcceeeccCC----------------------------------HHHHHHHhcCCCeeEEEeeccccccceEeCCchhH
Confidence 01134443322 1111111123566666655555556888873
Q ss_pred -----ccccCCCcEEEecccccCCCc-----cccccc--ceEEecccccc--CCCccEEEEEchhHHhhhCCCCCceeec
Q psy8733 293 -----IPDSQGIPLVSDMSSNFLSRK-----FDVSKF--GVIIAGAQKNI--GPAGITVVIVREDLLEYALPITPTVFHF 358 (621)
Q Consensus 293 -----i~~~~g~llvvDavSs~G~~p-----IDv~~~--gvl~asaqK~l--GP~Glg~livr~~ll~~~~~~~P~~ld~ 358 (621)
++.++++++|+|=+|+=.++. +|.++. |++..+ |.| |--=++.++.+++++....|
T Consensus 231 ~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilg--KalSGG~~Pvsavl~~~~im~~~~p-------- 300 (427)
T KOG1402|consen 231 KKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILG--KALSGGVYPVSAVLADDDIMLNIKP-------- 300 (427)
T ss_pred HHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEe--ccccCCeeeeEEEEecHHHHhccCC--------
Confidence 345899999999999876654 344433 355554 777 33337778888888754322
Q ss_pred cccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 359 ~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
-+++++|+--|. +..+.-++|+.|.++ ++-+|...+...+++.|.+++
T Consensus 301 ---geHgsTyggNpL-g~~vaiAalevi~ee----kL~era~~lG~~l~~~L~~l~ 348 (427)
T KOG1402|consen 301 ---GEHGSTYGGNPL-GCAVAIAALEVIVEE----KLVERAAKLGEILRDQLNKLQ 348 (427)
T ss_pred ---CccccccCCChH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcc
Confidence 235778864333 444556789999886 778888999999999999876
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.46 Score=53.19 Aligned_cols=125 Identities=12% Similarity=0.177 Sum_probs=73.8
Q ss_pred CceEEEEecccc-cccccccc---------ccccCCCcEEEecccc-cCCCcccc---ccc----ceEEeccccccC--C
Q psy8733 273 EASYLYYCDNET-VDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRKFDV---SKF----GVIIAGAQKNIG--P 332 (621)
Q Consensus 273 ~t~~V~~thnET-~tGv~~p~---------i~~~~g~llvvDavSs-~G~~pIDv---~~~----gvl~asaqK~lG--P 332 (621)
++.+|.+-.... ..|+..|- +++++|+++|+|=+++ +| +.=.+ +.+ |+++. -|.+| -
T Consensus 199 ~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfG-RtG~~~a~~~~gv~PDi~~~--gK~l~~G~ 275 (447)
T PRK06917 199 HIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLG-RTGAMFAMEHWGVEPDIMTL--GKGLGAGY 275 (447)
T ss_pred ceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcC-cccchhhHHhcCCCCCEEEe--eehhccCC
Confidence 455555544333 23465552 4568999999999987 32 21111 223 35555 48884 2
Q ss_pred -CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 333 -AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 333 -~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| ++.+..++++.+...+....+ -..++++-.|+ ...+..++|+.+.+. + +.++.+++.++|++.|+
T Consensus 276 ~P-i~a~~~~~~i~~~~~~~~~~~-------~~~~T~~gnpl-~~aaa~a~l~~l~~~-~---l~~~~~~~g~~l~~~L~ 342 (447)
T PRK06917 276 TP-IAATVVSDRVMEPILRGSRSI-------MSGHTLSANPL-SAATALAVLEYMEKH-N---LPEKAAEKGEYLIKGLQ 342 (447)
T ss_pred cc-eEEEEEcHHHHHHHhccCccc-------ccccCCCCCHH-HHHHHHHHHHHHHHC-C---HHHHHHHHHHHHHHHHH
Confidence 3 788888999876543211111 12345543334 467777889998765 3 45667777777877777
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 343 ~l 344 (447)
T PRK06917 343 KV 344 (447)
T ss_pred HH
Confidence 64
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0011 Score=70.07 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=51.2
Q ss_pred CCceEEEEeccccc-ccccccc--------ccccCCCcEEEecc------cccCCCcccccc-cceEEeccccccCCCcc
Q psy8733 272 PEASYLYYCDNETV-DGVEFNY--------IPDSQGIPLVSDMS------SNFLSRKFDVSK-FGVIIAGAQKNIGPAGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~-tGv~~p~--------i~~~~g~llvvDav------Ss~G~~pIDv~~-~gvl~asaqK~lGP~Gl 335 (621)
+.+++|+++...+. .|...+. +++++|+++++|++ .+.+..+=++.+ +|.+++|..|++|.++=
T Consensus 123 ~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~G 202 (290)
T PF01212_consen 123 PQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGG 202 (290)
T ss_dssp GGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSE
T ss_pred CCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccc
Confidence 46788888765443 3777764 45689999999997 223333333332 46999999999997777
Q ss_pred EEEEEchhHHhhh
Q psy8733 336 TVVIVREDLLEYA 348 (621)
Q Consensus 336 g~livr~~ll~~~ 348 (621)
++|+.+++.+++.
T Consensus 203 avl~~~~~~i~~~ 215 (290)
T PF01212_consen 203 AVLAGNKEFIAKA 215 (290)
T ss_dssp EEEEESHHHHHHH
T ss_pred eEEEechHHHHHH
Confidence 9999999977654
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.65 E-value=1.4 Score=49.47 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=78.9
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccCC--C
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIGP--A 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lGP--~ 333 (621)
++..+|.+-......|+..|- +++++|+++|+|=+|+ +|-. ..=.+.+| +++. -|.+|- -
T Consensus 212 ~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~--gK~lggG~~ 289 (451)
T PRK07678 212 ETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITM--AKGITSAYL 289 (451)
T ss_pred CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEe--ecccccCCc
Confidence 456666655554556777662 4568999999999984 5431 22233444 6666 488841 1
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
=+|.+.+++++.+.+.+..+. . .....++|+-.|+ +..+..++|+.+.++ + +.++.+++.++|++.|++
T Consensus 290 Pi~av~~~~~i~~~~~~~~~~----~-~~~h~~T~~gnp~-~~aaa~a~l~~l~~~-~---~~~~~~~~g~~l~~~l~~ 358 (451)
T PRK07678 290 PLSATAVKKEIYEAFKGKGEY----E-HFRHVNTFGGNPA-ACALALKNLEIMENE-N---LIERSAQLGELLLEQLKE 358 (451)
T ss_pred ceeEEEEcHHHHHHHhccCcc----c-ccccCCCCCcCHH-HHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHH
Confidence 189999999998765431110 0 0112456655554 445666789998775 3 455677777777777754
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.06 Score=63.29 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=77.9
Q ss_pred eEEEEecccccccccccc--ccccCCCcE-EEecccc--cCCCcc-c----ccc---cc---eEEecccccc-CCCccEE
Q psy8733 275 SYLYYCDNETVDGVEFNY--IPDSQGIPL-VSDMSSN--FLSRKF-D----VSK---FG---VIIAGAQKNI-GPAGITV 337 (621)
Q Consensus 275 ~~V~~thnET~tGv~~p~--i~~~~g~ll-vvDavSs--~G~~pI-D----v~~---~g---vl~asaqK~l-GP~Glg~ 337 (621)
+++.+| +.|=.|+..++ |.+.-|+.+ ++|.+-. +.-.|+ . +.. -| +++-|.||.| |-+-.+.
T Consensus 299 ~~vvit-~pTYdGi~yd~~~I~~~~g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~ 377 (713)
T PRK15399 299 VHAVIT-NSTYDGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASL 377 (713)
T ss_pred eEEEEE-CCCCCceeeCHHHHHHHhCCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchhee
Confidence 565444 55889999996 544446776 5996532 111121 1 111 13 4488999999 4888888
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+-++.++ +.....+.-.++ -+|+...++++..+..++....| +.+.++..+++..+|+.|.++.+
T Consensus 378 iHvk~~v------------d~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G-~~l~~~~i~~a~~fR~~l~~~~~ 444 (713)
T PRK15399 378 IHIKGEY------------DEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPG-KRLINRSVERALHFRKEVQRLRE 444 (713)
T ss_pred eeecCCC------------CHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccc
Confidence 8776532 100000000111 25667777888888888875324 56778888889999999988764
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.055 Score=61.79 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=52.8
Q ss_pred CCCCceEEEEecccccccccccc--------ccc--cCCCcEEEecccccCCC-cccc-ccc--c-eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPD--SQGIPLVSDMSSNFLSR-KFDV-SKF--G-VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~--~~g~llvvDavSs~G~~-pIDv-~~~--g-vl~asaqK~lGP~G 334 (621)
+++++++|.+++-.|+||...+. +++ .+++++|+|-+=.-... ...+ +.+ . +++.|-=|.+|.+|
T Consensus 238 ~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG 317 (527)
T PRK09275 238 RDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATG 317 (527)
T ss_pred cCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcH
Confidence 56789999999999999999883 332 45899999976432211 1111 111 2 77888899999888
Q ss_pred --cEEEEEchh
Q psy8733 335 --ITVVIVRED 343 (621)
Q Consensus 335 --lg~livr~~ 343 (621)
+|+++..++
T Consensus 318 ~RlG~i~~~~~ 328 (527)
T PRK09275 318 WRLGVIALHED 328 (527)
T ss_pred hHHhhhhcCch
Confidence 699998876
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.085 Score=59.22 Aligned_cols=126 Identities=14% Similarity=0.255 Sum_probs=78.7
Q ss_pred CceEEEE-ecccccccccccc--------ccccCCCcEEEecccccCCC---cc-ccccc---c--eEEeccccccCCC-
Q psy8733 273 EASYLYY-CDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR---KF-DVSKF---G--VIIAGAQKNIGPA- 333 (621)
Q Consensus 273 ~t~~V~~-thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~---pI-Dv~~~---g--vl~asaqK~lGP~- 333 (621)
+.|++++ ....|.||+..+. +++++++++|=|-.=+-... |. ++..+ + +.++|-=|.+.|.
T Consensus 226 ~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~Pgl 305 (459)
T COG1167 226 KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGL 305 (459)
T ss_pred CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhccccc
Confidence 5777764 4567899999885 45689999999876554322 22 23333 3 7778889999966
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHHHHH
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG----LAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG----l~~i~~r~~~la~~L~e~ 409 (621)
.+|+++..+++.+++.. .+ .....+++...-.+ ...++. .|+ +..+.+..+++.+.+.+.
T Consensus 306 RlG~vv~p~~~~~~~~~-------~k-----~~~~~~~s~~~Q~~---la~~l~-~G~~~~hl~~lR~~y~~rr~~l~~~ 369 (459)
T COG1167 306 RLGYVVAPPELIEKLLR-------LK-----QAADLGPSSLSQAA---LAAFLL-SGHYDRHLRRLRREYARRRDALLEA 369 (459)
T ss_pred ceeeeeCCHHHHHHHHH-------HH-----HHhcCCCChHHHHH---HHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998776521 11 11112222222222 233444 433 566777777777788888
Q ss_pred HHccC
Q psy8733 410 IDNSD 414 (621)
Q Consensus 410 L~~~~ 414 (621)
|.+..
T Consensus 370 L~~~~ 374 (459)
T COG1167 370 LAEYL 374 (459)
T ss_pred HHHhC
Confidence 87753
|
|
| >KOG1404|consensus | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.15 Score=55.32 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=76.5
Q ss_pred EEEecccccccc---cccc---------ccccCCCcEEEecccccCCCcccc---cccceE--EeccccccC-CCccEEE
Q psy8733 277 LYYCDNETVDGV---EFNY---------IPDSQGIPLVSDMSSNFLSRKFDV---SKFGVI--IAGAQKNIG-PAGITVV 338 (621)
Q Consensus 277 V~~thnET~tGv---~~p~---------i~~~~g~llvvDavSs~G~~pIDv---~~~gvl--~asaqK~lG-P~Glg~l 338 (621)
|+.--.||+.|+ +.+- +++++|.++|+|=+|+-.++-=.+ +..|++ +-+--|++| -.=+|.+
T Consensus 213 vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AV 292 (442)
T KOG1404|consen 213 VAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNGFPLGAV 292 (442)
T ss_pred eeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCCCcceee
Confidence 444445666554 4431 345799999999999865543222 222211 122348885 3448899
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.++++.+.+..... ...+|+--|+....+ .++|+-++++ ++.++..+...+|.+.|.++.
T Consensus 293 vtt~EIa~v~~~~~~----------~fnTyggnP~a~avg-~aVL~Vikee----~LqE~aa~vG~yl~~~l~~l~ 353 (442)
T KOG1404|consen 293 VTTPEIADVLNQKSS----------HFNTYGGNPVACAVG-LAVLKVIKEE----NLQENAAEVGSYLLEKLAALK 353 (442)
T ss_pred ecCHHHHHHHHhccc----------cccccCCCchhHHHH-HHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHh
Confidence 999998765532111 123444445555444 4578888774 888899999999999998763
|
|
| >KOG1360|consensus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.42 Score=52.18 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=84.8
Q ss_pred CceEEEEecccccccccccc--c---cccCCCcEEEecccccCC----------CcccccccceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNFLS----------RKFDVSKFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~G~----------~pIDv~~~gvl~asaqK~lGP~Glg~ 337 (621)
-+|.|++-.+-..+|.+.|+ + ++++|++.++|-+-++|- ++==+.+.|+|...--|.+|.-| |.
T Consensus 303 vPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG-GY 381 (570)
T KOG1360|consen 303 VPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG-GY 381 (570)
T ss_pred CCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc-ce
Confidence 36888888888889999997 3 468999999999888763 12223445566666667776544 44
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.-+.++++-++...| +..|. +.|...+.+.-+++++++.+.|..- ...+++..+++++.|.+.|
T Consensus 382 IAat~~LvDmiRSyAa-----------GFIFTTSLPP~vl~GAleaVr~lk~~eg~~l-R~~hqrnv~~~kq~l~~~G 447 (570)
T KOG1360|consen 382 IAATRKLVDMIRSYAA-----------GFIFTTSLPPMVLAGALEAVRILKSEEGRVL-RRQHQRNVKYVKQLLMELG 447 (570)
T ss_pred ehhhhhHHHHHHHhcC-----------ceEEecCCChHHHHhHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHcC
Confidence 4455555544433323 22232 3455567788889999986646443 4445666778888888875
|
|
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.066 Score=59.17 Aligned_cols=142 Identities=19% Similarity=0.123 Sum_probs=96.7
Q ss_pred CCCCceEEEEecccccccccccc--ccc---c-CCCcEEEecccccCCCc---ccccccc-------eEEecccccc-CC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--IPD---S-QGIPLVSDMSSNFLSRK---FDVSKFG-------VIIAGAQKNI-GP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--i~~---~-~g~llvvDavSs~G~~p---IDv~~~g-------vl~asaqK~l-GP 332 (621)
++++|..|....-.+.+|..-|+ +.+ + .+++++||+++.=.-.| .+..+|| -+.+++||.- -|
T Consensus 215 i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~ 294 (491)
T KOG1383|consen 215 IDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAP 294 (491)
T ss_pred hccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeee
Confidence 67899999999999999998885 332 3 89999999998755553 2233444 6899999965 69
Q ss_pred CccEEEEEchhHHhhhCCCCCce--eecccccc-----CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q psy8733 333 AGITVVIVREDLLEYALPITPTV--FHFKINAD-----NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~--ld~~~~~~-----~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~ 405 (621)
+|++.++=|.+-+- +.. -+ .||..-.. ++|+++ ..+++.-+++=.+-++ |-.+..+++.+.+..
T Consensus 295 ~G~~~vl~r~k~~~---~~q-~~~~~~w~Gg~y~s~TlngSR~g----~~va~~wa~~~~lG~e-GY~~~~~~ive~~~~ 365 (491)
T KOG1383|consen 295 AGSSWVLYRNKELL---PHQ-LFFHTDWLGGIYASPTLNGSRPG----SQVAAQWAALMSLGEE-GYRENTQNIVETARK 365 (491)
T ss_pred cCcEEEEEcccccc---cce-EEEeccccCccccCcccccCCcc----cHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 99999888765321 100 01 13332111 234443 3444444555556566 777777889999999
Q ss_pred HHHHHHccCCcccCc
Q psy8733 406 LYQEIDNSDKFYECP 420 (621)
Q Consensus 406 L~e~L~~~~g~~~~~ 420 (621)
|+++|++++++....
T Consensus 366 l~egie~i~~i~i~g 380 (491)
T KOG1383|consen 366 LREGIENIKGIKIVG 380 (491)
T ss_pred HHHhhhccccceecC
Confidence 999999998887653
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=1.2 Score=49.77 Aligned_cols=122 Identities=18% Similarity=0.336 Sum_probs=71.7
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccCCCc--
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIGPAG-- 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lGP~G-- 334 (621)
+..+|.+-......|+..|- +++++|+++|.|=+++ ++. .++-++.++ ++ +-=|.+| +|
T Consensus 219 ~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~-~G~p 295 (451)
T PRK06918 219 TIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLG-AGVP 295 (451)
T ss_pred ceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhc-CCCc
Confidence 44455443333334665542 3568999999999976 432 222233333 44 3458886 24
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+ ....++++.. .....+..++|+++.+. + +.++.+++.+++.+.|+++
T Consensus 296 ig~v~~~~~i~~~~~~-----------~~~~~T~~g~-~l~~aaa~a~l~~i~~~-~---~~~~~~~~g~~l~~~l~~l 358 (451)
T PRK06918 296 ISGVIGRKEIMDESAP-----------GELGGTYAGS-PLGCAAALAVLDIIEKE-N---LNDRAIELGKVVMNRFEEM 358 (451)
T ss_pred cEEEEEcHHHHhccCC-----------CCcCcCCCcC-HHHHHHHHHHHHHHHHC-C---HHHHHHHHHHHHHHHHHHH
Confidence 6889999888765421 1123455433 34456666788988764 3 3445566667777777664
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0062 Score=66.99 Aligned_cols=159 Identities=16% Similarity=0.211 Sum_probs=114.8
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCC--c-----eee---eeecccCCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITP--T-----VFH---FKINADNNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p--~-----~~~---y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|++.+|.+|-+||.|+++++++++++++..+..- . ..+ |........ ..|||+..++-+...++|+.+
T Consensus 226 ~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e-~GT~~~~~~~~l~~al~~~~~ 304 (424)
T PLN02855 226 ADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFE-AGTPAIGEAIGLGAAIDYLSE 304 (424)
T ss_pred CCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhcc-CCChHHHHHHHHHHHHHHHHH
Confidence 47788999998899999999999999877543210 0 001 111111122 468999999999999999987
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCc--ccccC----CCC-------Cc-ccHHHHHHHHHc-cCccccCC-------
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKF--YECPV----QAG-------FP-LDELFLKEAKAH-NMIQLKGH------- 576 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~--~~~~v----~~~-------~~-~~~~~~~~~~~~-~i~~~~g~------- 576 (621)
. |++.++++..+-++.+++.+++-+++ |.... ... .. -..++.+.+.++ ||....|.
T Consensus 305 ~-g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~ 383 (424)
T PLN02855 305 I-GMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLH 383 (424)
T ss_pred h-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHH
Confidence 7 69999999999999999999776542 21111 000 01 124577788777 99877665
Q ss_pred ---CCCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 577 ---RLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 577 ---~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
+..+.||+|.-.-.|.||++.|++.|++..++.
T Consensus 384 ~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~ 419 (424)
T PLN02855 384 RYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFF 419 (424)
T ss_pred HHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 223569999999999999999999999987663
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=1.6 Score=48.63 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=75.1
Q ss_pred CCceEEEEeccccccccccc-c--------ccccCCCcEEEecccccCCCcc---cccccc----eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFN-Y--------IPDSQGIPLVSDMSSNFLSRKF---DVSKFG----VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p-~--------i~~~~g~llvvDavSs~G~~pI---Dv~~~g----vl~asaqK~lGP~G- 334 (621)
++.++|.+-.+-..+|+..+ . +++++|+++|+|=+++-..+.= -.+.+| ++.. =|.+|+ |
T Consensus 197 ~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tl--sK~l~~-G~ 273 (425)
T PRK07495 197 QRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTM--AKGLAG-GF 273 (425)
T ss_pred CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEee--hhhhcC-Cc
Confidence 35667766555555675543 1 4568999999999976222221 123333 4444 588852 3
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++.+.+.+ . ...++++.+|+ ...+..++++++.+. .+.++.+++.++|++.|+++
T Consensus 274 pigav~~~~~i~~~~~~---~--------~~~~T~~~~pl-~~aaa~a~l~~l~~~----~l~~~~~~~g~~l~~~L~~l 337 (425)
T PRK07495 274 PLAAVTGRAEIMDAPGP---G--------GLGGTYGGNPL-GIAAAHAVLDVIEEE----DLCERANQLGNRLKQRLASL 337 (425)
T ss_pred cceEEEEcHHHHhccCC---C--------CcCCCCCCCHH-HHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHH
Confidence 7888899888764421 0 12345544444 456666889999764 45566677777787777764
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.8 Score=48.73 Aligned_cols=126 Identities=15% Similarity=0.132 Sum_probs=74.3
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--C-C
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--P-A 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P-~ 333 (621)
++.+|.+-...-..|+..|- +++++|+++|+|=+|+ +|- ..+-.+.+| ++++ =|.+| - |
T Consensus 219 ~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~gG~~P 296 (456)
T PRK07480 219 NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTI--AKGLTSGYIP 296 (456)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeee--ehhhccCCcc
Confidence 45555554444445676652 4578999999999985 542 112223344 5555 48884 1 2
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS-LQKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~-~~la~~L~e~L~~ 412 (621)
+|.++.++++.+..... +.. ....++|+.. ..+..+..++|+.+.+. + +.++. +++.++|++.|++
T Consensus 297 -i~av~~~~~i~~~~~~~-~~~------~~~~~T~~gn-pl~~Aaa~a~L~~l~~~-~---l~~~~~~~~g~~l~~~l~~ 363 (456)
T PRK07480 297 -MGAVGVGDRVAEVLIEE-GGE------FNHGFTYSGH-PVAAAVALANLRILRDE-G---IVERVRDDTGPYLQKRLRE 363 (456)
T ss_pred -ceEEEEcHHHHHHHhcC-CCC------cccCCCCCcC-HHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHH
Confidence 78888899987654210 100 1124555433 34556677889999876 4 34455 3566777777765
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 364 l 364 (456)
T PRK07480 364 L 364 (456)
T ss_pred h
Confidence 3
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.075 Score=57.16 Aligned_cols=124 Identities=16% Similarity=0.240 Sum_probs=77.9
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cC--CCcccccccc----eEEeccccccC-CCc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FL--SRKFDVSKFG----VIIAGAQKNIG-PAG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G--~~pIDv~~~g----vl~asaqK~lG-P~G 334 (621)
++..+|.+-..-...|...+- +++++|+++|+|=+|+ +| +..+-.+.+| +++.| |.|+ --=
T Consensus 176 ~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG~p 253 (339)
T PF00202_consen 176 DEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFG--KGLGGGLP 253 (339)
T ss_dssp GGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTTSS
T ss_pred CcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccc--cchhhhhh
Confidence 455666665555555666542 4568999999999998 43 2334334444 77776 9992 244
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.++.++++.+...+. ...++++--| .+..+..++|+.+.+. + +.++.+++..++.+.|.++
T Consensus 254 ~sav~~~~~i~~~~~~~-----------~~~~T~~g~p-~~~aaa~~~l~~~~~~-~---~~~~~~~~g~~l~~~L~~l 316 (339)
T PF00202_consen 254 ISAVLGSEEIMEAFQPG-----------SHGSTFGGNP-LSCAAALATLEILEEE-D---LLERVRELGERLREGLREL 316 (339)
T ss_dssp EEEEEEEHHHHTTSCTT-----------SSTCTTTT-H-HHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhcccccc-----------ccccccccch-HhhhhhhhHHHhhccH-H---HHHHHHHHHHHHHHHHHHH
Confidence 88999999987654221 1345555333 3566777889999886 3 4455566666666666654
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.5 Score=49.32 Aligned_cols=122 Identities=19% Similarity=0.239 Sum_probs=74.4
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCccc---cccc----ceEEeccccccC-CC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRKFD---VSKF----GVIIAGAQKNIG-PA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~pID---v~~~----gvl~asaqK~lG-P~ 333 (621)
.++.+|.+-......|+..|- +++++|+++|+|=+++ +| +.=. .+.+ |+++. -|.+| --
T Consensus 221 ~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~G-rtG~~~a~~~~gv~PDiv~~--gK~l~gG~ 297 (457)
T PRK05639 221 DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIG-RTGKWFASEWFEVKPDLIIF--GKGVASGM 297 (457)
T ss_pred CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccC-cCchHHHHHhcCCCCCEEEe--chhhcCCC
Confidence 456666655444455666652 4568999999999987 32 1111 1222 46665 58884 34
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++|.++.++++.+. .. .. ..++++-.|+ ...+..++|+.+.+. .+.++.+++.++|++.|+++
T Consensus 298 pi~av~~~~~i~~~-~~--~~---------~~~T~~g~p~-~~aaa~a~l~~l~~~----~l~~~~~~~g~~l~~~L~~l 360 (457)
T PRK05639 298 GLSGVIGRKELMDL-TS--GS---------ALLTPAANPV-ISAAAEATLEIIEEE----NLLKNALKVGEFIKKRLLEM 360 (457)
T ss_pred cceeEEehHHHHhh-cC--CC---------cccCCCcCHH-HHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHHHH
Confidence 48999999998762 11 00 1234443333 456666789988775 34556666788888888764
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.062 Score=63.19 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=73.1
Q ss_pred EEEEecccccccccccc--cc---ccCCCcEEEecccccCCC---c-cc-cccc-------c--eEEeccccccC-CCcc
Q psy8733 276 YLYYCDNETVDGVEFNY--IP---DSQGIPLVSDMSSNFLSR---K-FD-VSKF-------G--VIIAGAQKNIG-PAGI 335 (621)
Q Consensus 276 ~V~~thnET~tGv~~p~--i~---~~~g~llvvDavSs~G~~---p-ID-v~~~-------g--vl~asaqK~lG-P~Gl 335 (621)
++ +..+.|=.|+..++ |. +.++ +++|.+-. ++. | +. .+.. + +++-|.||.|+ -+-.
T Consensus 300 ~~-vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwg-ah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQa 375 (714)
T PRK15400 300 HA-VITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWV-PYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQA 375 (714)
T ss_pred EE-EEECCCCccEecCHHHHHHHhCCCC--EEEEccch-hhhccCcccCCcChhhcCCCCCCceEEEEchhhcccchhHH
Confidence 54 44456889999996 32 3444 67885422 111 1 10 1111 3 88889999994 6655
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCcc--CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVY--NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~--~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+.+-++..+ +.....+.-.++ -+|+...++++..+..++....| +.+.++..+++..+|+.|.++
T Consensus 376 S~LHvkg~v------------d~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~l~~~ 442 (714)
T PRK15400 376 SMIHVKGDV------------NEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRL 442 (714)
T ss_pred hHHHHcCCC------------CHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhC
Confidence 555443321 100000000111 25667777888888888875324 667788888999999999888
Q ss_pred CC
Q psy8733 414 DK 415 (621)
Q Consensus 414 ~g 415 (621)
++
T Consensus 443 ~~ 444 (714)
T PRK15400 443 RT 444 (714)
T ss_pred CC
Confidence 75
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.6 Score=48.94 Aligned_cols=125 Identities=15% Similarity=0.207 Sum_probs=74.8
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCCCccc---ccccc----eEEeccccccCC--Cc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRKFD---VSKFG----VIIAGAQKNIGP--AG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~pID---v~~~g----vl~asaqK~lGP--~G 334 (621)
+..+|.+-..-...|+..|- +++++|+++|+|=+++-..+.=. .+.+| ++++ -|.+|- -=
T Consensus 214 ~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~--gK~lggG~~P 291 (451)
T PRK06062 214 TIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITF--AKGVNSGYVP 291 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeee--chhhhcCCcC
Confidence 45555554444445666661 45789999999999883322211 12233 5555 488841 11
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH-HHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKS-VLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la-~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.. .+ ....++|+..| .+..+..++|+.+.++ + +.++.+++. ++|++.|+++
T Consensus 292 igav~~~~~i~~~~~~-~~--------~~~~~T~~gnp-l~~Aaa~a~L~~l~~~-~---l~~~~~~~G~~~l~~~L~~l 357 (451)
T PRK06062 292 LGGVAISEAIAATFAD-RP--------YPGGLTYSGHP-LACAAAVATINAMEEE-G---IVENAARIGAEVLGPGLREL 357 (451)
T ss_pred cEEEEEcHHHHHHhcc-CC--------CCCCCCCCCCH-HHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHHHH
Confidence 7888899988765421 00 11235665544 4556667789999776 3 556666666 4777777664
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.011 Score=63.52 Aligned_cols=140 Identities=15% Similarity=0.090 Sum_probs=96.1
Q ss_pred hhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 447 FFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 447 ~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
...|++.+|+||-+||.|++++++|++++++..+ .+..+. ....-...|||+..|+-+...|+++.+ + .+.++
T Consensus 189 ~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p---~~~g~~--~~~~~~~GT~~~~~~~~l~~al~~~~~-~-~~~i~ 261 (364)
T PLN02651 189 LGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEP---LMSGGG--QERGRRSGTENTPLVVGLGAACELAMK-E-MDYDE 261 (364)
T ss_pred CCCCEEEechhhhCCCCceEEEEEcCCCCCCCCc---cccCCC--ccCCccCCCccHHHHHHHHHHHHHHHH-h-HHHHH
Confidence 3468899999997779999999999998865433 222111 111224679999999999999999986 3 49999
Q ss_pred HHHHHHHHHHHHHHhc-cCCc--ccccCCCC----------Cc-c-cHHHHHHHHHccCccccCCC--------------
Q psy8733 527 QNSLQKSVLLYQEIDN-SDKF--YECPVQAG----------FP-L-DELFLKEAKAHNMIQLKGHR-------------- 577 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~-~~~~--~~~~v~~~----------~~-~-~~~~~~~~~~~~i~~~~g~~-------------- 577 (621)
++.++-++.+++.+.+ -+++ |.+ .++. .+ . .+++.+.+++ |....|+.
T Consensus 262 ~~~~~l~~~l~~~l~~~~~~~~i~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~ 338 (364)
T PLN02651 262 KHMKALRERLLNGLRAKLGGVRVNGP-RDPEKRYPGTLNLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRA 338 (364)
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEECC-CCcccCcCCEEEEEeCCCCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHH
Confidence 9999999999999875 3332 221 1110 01 1 2345666643 66655541
Q ss_pred -------CCCccceeeccCCCHHHHH
Q psy8733 578 -------LVGGIRASIYNAITVDEAV 596 (621)
Q Consensus 578 -------~~~~~r~~~~~a~~~~~~~ 596 (621)
..|.+|+|.=+-.|.||++
T Consensus 339 ~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 339 LGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred cCCChHHhCceEEEEcCCCCCHHHcC
Confidence 1367999999999988863
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.013 Score=64.84 Aligned_cols=161 Identities=18% Similarity=0.205 Sum_probs=123.9
Q ss_pred hhhHHHHHhhccc-ccccCCcEEeeecHhHhhhcCCCC--Cceeeeeeccc--------CCCccCCCchhHHHHHHHHHH
Q psy8733 446 AFFFGVIIAGAQK-NIGPAGITVVIVREDLLEYALPIT--PTVFHFKINAD--------NNSVYNTPPTFVVHVIQRVFA 514 (621)
Q Consensus 446 ~~~~~~~~a~~qk-~~GpaGl~v~iv~~~~l~~~~~~~--p~~~~y~~~~~--------~~s~~nTP~~~~iy~~~~vl~ 514 (621)
+...|.+.+|+=| -+||.|++|..+|+++++.-.|.. ..+.++...-. -.----|||+.+++-++..++
T Consensus 212 ~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~ 291 (405)
T COG0520 212 ELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALD 291 (405)
T ss_pred hcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHH
Confidence 4568999999999 778999999999999998864431 22222222100 011235999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHhccCC--cccccC-CCC------Cc--ccHHHHHHHHHccCccccCCCC-----
Q psy8733 515 WIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK--FYECPV-QAG------FP--LDELFLKEAKAHNMIQLKGHRL----- 578 (621)
Q Consensus 515 ~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~--~~~~~v-~~~------~~--~~~~~~~~~~~~~i~~~~g~~~----- 578 (621)
|+++.| .+++++..++-++.+++-+.+-++ +|.++- +.. .+ -..++.+.+.++||..-.||.-
T Consensus 292 ~~~~ig-~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~ 370 (405)
T COG0520 292 YLLEIG-MEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLH 370 (405)
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHH
Confidence 999888 999999999999999999998773 344443 111 11 3466889999999888888644
Q ss_pred -----CCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 579 -----VGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 579 -----~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
.+++|+|...=.|.||+++|++.|+++.+
T Consensus 371 ~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 371 RLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 45599999999999999999999998865
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.014 Score=62.68 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=108.0
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCc-----e-----eeeeecccCCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPT-----V-----FHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~-----~-----~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|++.+|.+|.+|+.|+++++++++++++..+.... . ..|....... .-.|||+..++-+...++|+++
T Consensus 192 ~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~al~~al~~l~~ 270 (373)
T cd06453 192 CDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKF-EAGTPNIAGAIGLGAAIDYLEK 270 (373)
T ss_pred CCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCcccc-CCCCCCHHHHHHHHHHHHHHHH
Confidence 466778999999999999999999998775442110 0 0011100011 1248999999999999999987
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCccccc--CC-CC-------Cc-ccHHHHHHHHHccCccccCCC----------
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP--VQ-AG-------FP-LDELFLKEAKAHNMIQLKGHR---------- 577 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~--v~-~~-------~~-~~~~~~~~~~~~~i~~~~g~~---------- 577 (621)
. |++++.++.++.++.+++.+++.++ +... .. .. .. ...++.+.++++||....|+.
T Consensus 271 ~-g~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~ 348 (373)
T cd06453 271 I-GMEAIAAHEHELTAYALERLSEIPG-VRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLG 348 (373)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHhcCCC-eEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhHHHHHhC
Confidence 6 5899999999999999999988764 2211 11 00 01 225688899999998766552
Q ss_pred CCCccceeeccCCCHHHHHHHHHHH
Q psy8733 578 LVGGIRASIYNAITVDEAVILVKFM 602 (621)
Q Consensus 578 ~~~~~r~~~~~a~~~~~~~~l~~~~ 602 (621)
..+.||+|.=.-+|.||+++|++.|
T Consensus 349 ~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 349 VPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CCCeEEEEecCCCCHHHHHHHHhhC
Confidence 2467999999999999999998864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.01 Score=64.75 Aligned_cols=159 Identities=16% Similarity=0.112 Sum_probs=112.3
Q ss_pred hhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCC--ceee---------eeecccCCCccCCCchhHHHHHHHHHHH
Q psy8733 447 FFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITP--TVFH---------FKINADNNSVYNTPPTFVVHVIQRVFAW 515 (621)
Q Consensus 447 ~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p--~~~~---------y~~~~~~~s~~nTP~~~~iy~~~~vl~~ 515 (621)
...|++.+|.+|-+||.|++++++++++++...+..- ...+ |+..+... -..|||+.+|+-+...+++
T Consensus 215 ~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~-e~GT~~~~~~~~l~~al~~ 293 (406)
T PRK09295 215 LDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRF-EAGTPNTGGIIGLGAALDY 293 (406)
T ss_pred cCCCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhc-CCCCccHHHHHHHHHHHHH
Confidence 3467888999998899999999999999876432110 0100 00000111 1349999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhccCCccc-ccCCCC--------CcccHHHHHHHHHccCccccCC----------
Q psy8733 516 IKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE-CPVQAG--------FPLDELFLKEAKAHNMIQLKGH---------- 576 (621)
Q Consensus 516 ~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~-~~v~~~--------~~~~~~~~~~~~~~~i~~~~g~---------- 576 (621)
+.+.| ++.++++.++-++.+++.+.+-+++-- .+.... .....++.+.+.++||+...|.
T Consensus 294 ~~~~g-~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~ 372 (406)
T PRK09295 294 VSALG-LNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYY 372 (406)
T ss_pred HHHhC-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHH
Confidence 98764 899999999999999999877654211 011110 0122457778899999876553
Q ss_pred CCCCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 577 RLVGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 577 ~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
+..|.+|+|.-.-.|.||+++|++.|++..+
T Consensus 373 ~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 373 NVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 2235699999999999999999999998743
|
|
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.48 Score=49.93 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=67.7
Q ss_pred ccccccccc-----ccccCCCcEEEecccccCC---------Ccccc-cccceEEeccccccC-CCccEEEEEchhHHhh
Q psy8733 284 TVDGVEFNY-----IPDSQGIPLVSDMSSNFLS---------RKFDV-SKFGVIIAGAQKNIG-PAGITVVIVREDLLEY 347 (621)
Q Consensus 284 T~tGv~~p~-----i~~~~g~llvvDavSs~G~---------~pIDv-~~~gvl~asaqK~lG-P~Glg~livr~~ll~~ 347 (621)
...|-..|+ +++++|+++++|-+.+-|- +.+.+ .+.|++...--|.+| ..| |+....+.+..-
T Consensus 204 SMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-Gyttgp~~li~l 282 (417)
T KOG1359|consen 204 SMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG-GYTTGPKPLISL 282 (417)
T ss_pred ccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC-CCccCChhHHHH
Confidence 344556664 4568999999997765431 12222 234477777788886 443 555555555443
Q ss_pred hCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 348 ALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 348 ~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
++.... +..| |+.|...+-...++++.+..- .....+.+...+++++..+..+ |.+
T Consensus 283 lrqr~R-----------pylFSnslppavV~~a~ka~dllm~s---~~~i~~~~a~~qrfr~~me~aG-ftI 339 (417)
T KOG1359|consen 283 LRQRSR-----------PYLFSNSLPPAVVGMAAKAYDLLMVS---SKEIQSRQANTQRFREFMEAAG-FTI 339 (417)
T ss_pred HHhcCC-----------ceeecCCCChhhhhhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhcC-cee
Confidence 322111 1112 444544455556778877653 3444556667788888887764 543
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.015 Score=62.04 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=72.0
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++.+|.||-+||.|++++++++++++... .-|.+... . ........|||+..|+-+...|+.+.+ |++.+.+
T Consensus 190 ~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~ 264 (353)
T TIGR03235 190 RIDLISCSGHKIYGPKGIGALVIRKRGKPKAP-LKPIMFGG-G-QERGLRPGTLPVHLIVGMGEAAEIARR--NAQAWEV 264 (353)
T ss_pred CCCEEEeehhhcCCCCceEEEEEccCcccccc-cCceeeCC-C-CcCccccCCCChHHHHHHHHHHHHHHh--hHHHHHH
Confidence 46888899999999999999999999765431 23433321 1 123345679999999999999998764 7999999
Q ss_pred HHHHHHHHHHHHHhccCCc
Q psy8733 528 NSLQKSVLLYQEIDNSDKF 546 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~ 546 (621)
+.++.++.+++.+.+ .++
T Consensus 265 ~~~~l~~~l~~~l~~-~g~ 282 (353)
T TIGR03235 265 KLRAMRNQLRDALQT-LGV 282 (353)
T ss_pred HHHHHHHHHHHHhcc-CCe
Confidence 999999999999976 543
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.02 Score=62.14 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=112.2
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCC--ceee--------eeecccCCCccCCCchhHHHHHHHHHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITP--TVFH--------FKINADNNSVYNTPPTFVVHVIQRVFAWIK 517 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p--~~~~--------y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~ 517 (621)
..|++.+|.+|-+||.|++++++++++++...+... .+.+ |...+... -..|||+..++.+...++++.
T Consensus 211 ~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~al~~al~~~~ 289 (403)
T TIGR01979 211 DCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKF-EAGTPNIAGVIGLGAAIDYLE 289 (403)
T ss_pred CCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhc-CCCCccHHHHHHHHHHHHHHH
Confidence 357788899999999999999999998876433210 0000 10001111 135999999999999999997
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHhccCCccc-ccCCC---C--------CcccHHHHHHHHHccCccccCC---------
Q psy8733 518 RQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE-CPVQA---G--------FPLDELFLKEAKAHNMIQLKGH--------- 576 (621)
Q Consensus 518 ~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~-~~v~~---~--------~~~~~~~~~~~~~~~i~~~~g~--------- 576 (621)
+. |.+.+.++..+.++.+++.+++.+++=. .|.++ . .....++.+.++++||....|.
T Consensus 290 ~~-g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~ 368 (403)
T TIGR01979 290 AI-GLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQPLMRR 368 (403)
T ss_pred Hh-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhHHHHHH
Confidence 66 5899999999999999999987654311 11111 0 0123467888999999876542
Q ss_pred -CCCCccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 577 -RLVGGIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 577 -~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
+..|.+|+|.=.-.+.+|++.|++.|++..+.
T Consensus 369 ~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~ 401 (403)
T TIGR01979 369 FGVPATCRASFYIYNTEEDIDALVEALKKVRKF 401 (403)
T ss_pred hCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 33567999987677999999999999987654
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.1 Score=49.78 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=75.3
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCCCccc---cccc----ceEEeccccccC--CCc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLSRKFD---VSKF----GVIIAGAQKNIG--PAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~~pID---v~~~----gvl~asaqK~lG--P~G 334 (621)
+..+|.+-......|++.| + +++++|+++|+|=+++-. +--. .+.+ |+++. =|.+| -|
T Consensus 200 ~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~--gK~lggG~P- 275 (428)
T PRK12389 200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTAL--GKIIGGGLP- 275 (428)
T ss_pred cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeee--chhhcCCCc-
Confidence 4555655555555677766 1 456899999999998743 2111 1122 35444 48873 22
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++.+.+.+..+. ...++++-.|+ ...+..++|+.+.++ + +.++.+++.++|++.|.++
T Consensus 276 i~av~~~~~i~~~~~~~~~~--------~~~~T~~gnpl-~~Aaala~L~~l~~~-~---l~~~~~~~g~~l~~~L~~l 341 (428)
T PRK12389 276 IGAYGGRKDIMEQVAPLGPA--------YQAGTMAGNPA-SMAAGIACLEVLQQE-G---VYEKLDRLGAMLEEGILEA 341 (428)
T ss_pred eeEEeEHHHHHhhhccCCCc--------ccccCCccCHH-HHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHHH
Confidence 67788999988765321111 12345543334 466667789988765 3 5667777888888888764
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.2 Score=50.00 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=78.5
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccC---C
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIG---P 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lG---P 332 (621)
+++.+|.+-......|+..|- +++++|+++|+|=+|+ +|-. ..-.+.+| +++.| |.+| -
T Consensus 212 ~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~ 289 (449)
T PRK07481 212 DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLA--KGITSGYV 289 (449)
T ss_pred CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEe--ecccCCCc
Confidence 356666665555556776652 4568999999999987 4321 11123333 66664 8883 1
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
| +|.+..++++.+...+.... .......++++--|+ ...+..++|+.+.+. ++.++.+++.++|++.|.+
T Consensus 290 P-i~av~~~~~i~~~~~~~~~~----~~~~~h~~T~~gnpl-~~aaa~a~L~~l~~~----~l~~~~~~~g~~l~~~L~~ 359 (449)
T PRK07481 290 P-LGATMVNARIADAFEANADF----GGAIMHGYTYSGHPV-ACAAALATLDIVVRE----DLPANAAKRGAYLLEGLQP 359 (449)
T ss_pred C-ceEEEEcHHHHHHHhccCcc----ccccccCCCCCCCHH-HHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHH
Confidence 3 78899999987765321100 000113455644334 456666788988765 4566677778888888876
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 360 l 360 (449)
T PRK07481 360 L 360 (449)
T ss_pred H
Confidence 4
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.5 Score=49.37 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=75.8
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccCC--Cc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIGP--AG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lGP--~G 334 (621)
+..+|.+=......|+..+- +++++|+++|+|=+|+ +|-. -+-.+.+| +++.| |.+|- --
T Consensus 218 ~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~g--K~lggG~~P 295 (460)
T PRK06105 218 TIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMS--KQLSSSYQP 295 (460)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeee--cccccCccc
Confidence 44555544444444666551 4568999999999984 6531 11122233 56554 88841 12
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+..+.. ......++++-.|+. ..+..++|+.+.++ ++.++.+++.++|++.|.++
T Consensus 296 ~~av~~~~~i~~~~~~~~~~~----~~~~h~~T~~gnpl~-~aaa~a~L~~i~~~----~l~~~v~~~g~~l~~~L~~l 365 (460)
T PRK06105 296 LSAVLMNEKVYDPIADESGKI----GTFGHGFTASGHPVA-AAVALENLAIIEER----DLVGNAAERGARLQARLRAL 365 (460)
T ss_pred ceEEEEcHHHHHHHhcccccC----cccccCCCCCCCHHH-HHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHh
Confidence 788888999876553211100 001123455544444 44455689999875 45667777888888888764
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.2 Score=50.16 Aligned_cols=130 Identities=12% Similarity=0.118 Sum_probs=78.4
Q ss_pred CCceEEEEec-ccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--C
Q psy8733 272 PEASYLYYCD-NETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--P 332 (621)
Q Consensus 272 ~~t~~V~~th-nET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P 332 (621)
++..+|.+-. .....|+..+- +++++|+++|+|=+|+ +|- .-+-.+.+| +++.| |.+| -
T Consensus 213 ~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~ 290 (466)
T PRK07030 213 DEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLS--KALTGGY 290 (466)
T ss_pred CceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEeee--hhccCCc
Confidence 3455555544 23445776652 4568999999999976 542 111223333 66663 8883 2
Q ss_pred -CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 333 -AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 333 -~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.+..++++.+......+. .......++|+- |..+..+..++|+.+.++ + +.++.+++.++|++.|+
T Consensus 291 ~P-i~av~~~~ei~~~~~~~~~~----~~~~~h~~T~~g-npla~aaa~a~L~~i~~~-~---l~~~~~~~G~~l~~~L~ 360 (466)
T PRK07030 291 LP-LAAVLTTDTVYQAFYDDYPT----LRAFLHSHSYTG-NPLACAAALATLDIFEQD-N---VIENNRALARRMAEATA 360 (466)
T ss_pred cc-ceEEEecHHHHHHHhccccc----ccccccCCCCCC-CHHHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHH
Confidence 3 88899999987655321110 000012355543 334466667789999876 3 55677788888888887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 361 ~l 362 (466)
T PRK07030 361 HL 362 (466)
T ss_pred HH
Confidence 65
|
|
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.55 Score=52.02 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=71.7
Q ss_pred cccCCCcEEEecccccCCCc-----------ccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccc
Q psy8733 294 PDSQGIPLVSDMSSNFLSRK-----------FDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINA 362 (621)
Q Consensus 294 ~~~~g~llvvDavSs~G~~p-----------IDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~ 362 (621)
.+++.+.+++|...|+|+++ +|-.+.|++.+..-|.+|-.| |.+.-++++.+.+....+.-. |
T Consensus 302 kkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G-Gyiagsk~lid~lrt~s~~~~-y---- 375 (519)
T KOG1357|consen 302 KKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG-GYIAGSKELIDYLRTPSPSAL-Y---- 375 (519)
T ss_pred hccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc-ceecCcHHHHhhhccCCCcee-e----
Confidence 35788999999999999872 344555688888889888666 677778888765543222110 0
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQ---GGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~---gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
...-.||+. --.-.+++.+..+ ++-+...++..+.+.+++..+...+ |...
T Consensus 376 ---at~~sppva--qq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~g-fivy 429 (519)
T KOG1357|consen 376 ---ATSLSPPVA--QQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMG-FIVY 429 (519)
T ss_pred ---cccCChHHH--HHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCc-EEEe
Confidence 111123332 2233456666532 1246667777888888888888764 5544
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.021 Score=60.80 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=114.5
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhcCC---CCCceeeeeec---ccC-CCccCCCchhHHHHHHHHHHHHHhc
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYALP---ITPTVFHFKIN---ADN-NSVYNTPPTFVVHVIQRVFAWIKRQ 519 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~---~~p~~~~y~~~---~~~-~s~~nTP~~~~iy~~~~vl~~~~~~ 519 (621)
..|+++.|.+|.+| |.|++++++++++++...+ ..+..++.... ... ...-+|||...++.+...++|+.+
T Consensus 176 ~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~- 254 (356)
T cd06451 176 GVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILE- 254 (356)
T ss_pred CccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHH-
Confidence 46888899999998 8899999999999876542 11211111110 111 256789999999999999999886
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCCcccccCCC------------CCc-ccHHHHHHHHHc-cCccccCCCC--CCccc
Q psy8733 520 GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA------------GFP-LDELFLKEAKAH-NMIQLKGHRL--VGGIR 583 (621)
Q Consensus 520 gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~------------~~~-~~~~~~~~~~~~-~i~~~~g~~~--~~~~r 583 (621)
.|++.+.++..++++.+++.+++. ++ .....+ ... ....|.+.++++ ||....|+.. .+.||
T Consensus 255 ~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iR 332 (356)
T cd06451 255 EGLENRWARHRRLAKALREGLEAL-GL-KLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFR 332 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CC-eeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccccCCEEE
Confidence 478999999999999999999864 22 111100 001 235688999998 9998777654 35699
Q ss_pred eeeccCCCHHHHHHHHHHHHHH
Q psy8733 584 ASIYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 584 ~~~~~a~~~~~~~~l~~~~~~~ 605 (621)
++..+.++.||++++++.|++.
T Consensus 333 is~~~~~~~e~v~~~~~~l~~~ 354 (356)
T cd06451 333 IGHMGEATREDVLGVLSALEEA 354 (356)
T ss_pred EecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.37 Score=53.31 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=75.8
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC--------cc-ccccc-c--eEEecccccc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR--------KF-DVSKF-G--VIIAGAQKNI 330 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~--------pI-Dv~~~-g--vl~asaqK~l 330 (621)
.++++++.++.-.|.||...+. +++++++++|.|-+=.-... ++ .+... + +++.|-=|.+
T Consensus 192 ~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~ 271 (423)
T PLN02397 192 PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNM 271 (423)
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccC
Confidence 3567888888778999999883 34578999999976332210 11 11111 2 6677889999
Q ss_pred CCCc--cEEEE--E-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH---HHhh-CCHHHHHHHHHH
Q psy8733 331 GPAG--ITVVI--V-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW---IKRQ-GGLAKMEQNSLQ 401 (621)
Q Consensus 331 GP~G--lg~li--v-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~---i~~~-gGl~~i~~r~~~ 401 (621)
|++| +|+++ . .++.++++... ... . .......+|.....+...+|+- ..+. .-++.+.++.++
T Consensus 272 ~~~G~RvG~~v~~~~~~~~~~~~~~~------~~~-~-~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 343 (423)
T PLN02397 272 GLYGERVGALSVVCKSADVAVRVKSQ------LKL-I-ARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIIS 343 (423)
T ss_pred CCccccceEEEEEeCCHHHHHHHHHH------HHH-H-HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9988 47764 3 34443322100 000 0 0112222344333443333321 0000 015667778888
Q ss_pred HHHHHHHHHHccC
Q psy8733 402 KSVLLYQEIDNSD 414 (621)
Q Consensus 402 la~~L~e~L~~~~ 414 (621)
+.+.+++.|.+++
T Consensus 344 rr~~l~~~L~~~~ 356 (423)
T PLN02397 344 MRQKLYDALEARG 356 (423)
T ss_pred HHHHHHHHHHhcC
Confidence 8899999999873
|
|
| >KOG0053|consensus | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.32 Score=53.53 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=54.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-ccccccc--ceEEeccccccC-CCc--cEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-KFDVSKF--GVIIAGAQKNIG-PAG--ITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-pIDv~~~--gvl~asaqK~lG-P~G--lg~l 338 (621)
+.+++++|++=.-.|++....|+ +++.+|+++|||.+ |++. -+|.=.+ |+++-|+=|++| -.- .|++
T Consensus 159 i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnT--f~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~i 236 (409)
T KOG0053|consen 159 IKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNT--FGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSV 236 (409)
T ss_pred hccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCC--cCcccccChhhcCCCEEEEeeeeeecCCcceeeeEE
Confidence 55689999988888888888886 45789999999976 5553 2233334 499999999995 222 4566
Q ss_pred EEc-hhHHhhh
Q psy8733 339 IVR-EDLLEYA 348 (621)
Q Consensus 339 ivr-~~ll~~~ 348 (621)
+.+ ++++.++
T Consensus 237 v~n~~~~~~~l 247 (409)
T KOG0053|consen 237 VLNSEELASRL 247 (409)
T ss_pred ecCcHHHHHHH
Confidence 664 6666544
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.81 Score=51.44 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=77.8
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEeccc-ccCCCcc--ccccc----ceEEeccccccCCCc--
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSS-NFLSRKF--DVSKF----GVIIAGAQKNIGPAG-- 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavS-s~G~~pI--Dv~~~----gvl~asaqK~lGP~G-- 334 (621)
+..+|.+-......|+..+ + +++++|+++|+|=++ ++|-.-- -.+.+ |+++. =|.+| .|
T Consensus 221 ~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~--gK~l~-~G~~ 297 (460)
T PRK06541 221 TVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITC--AKGIT-SGYS 297 (460)
T ss_pred CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEe--ccccc-CCcc
Confidence 4555555555556677766 2 457899999999998 5652111 12223 35554 58886 22
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+...+....+ ...+++.-.| ....+..++|+.+.+. + +.++.+++.++|++.|.++
T Consensus 298 pigav~~~~~i~~~~~~~~~~~-------~~~~T~~gnp-~~~aaala~l~~l~~~-~---~~~~~~~~g~~l~~~L~~l 365 (460)
T PRK06541 298 PLGAMIASDRLFEPFLDGPTMF-------LHGYTFGGHP-VSAAVALANLDIFERE-G---LLDHVRDNEPAFRATLEKL 365 (460)
T ss_pred ceeEEEEcHHHHHHhhcCCCcc-------ccCCCCCCCH-HHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHh
Confidence 799999999877653211111 1123444333 4456666778888765 3 4577778888888888875
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=95.15 E-value=2.1 Score=47.82 Aligned_cols=138 Identities=14% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC--cccccccc--eEEeccccccC-C-----Ccc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR--KFDVSKFG--VIIAGAQKNIG-P-----AGI 335 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~--pIDv~~~g--vl~asaqK~lG-P-----~Gl 335 (621)
++++..|.++.-+ ..|+..++ +++++|+++++ ++ ...+. --.-.+|| ++ .+.||-|| | ||+
T Consensus 195 ~~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~a-d~~aL~~l~~Pge~GADI~-vg~~Q~fg~p~~~GGP~~ 270 (429)
T PF02347_consen 195 DDDTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GA-DPNALGGLKSPGEYGADIV-VGEHQTFGIPMGFGGPGA 270 (429)
T ss_dssp STTEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CG-GCCGCCTC--GGGGT-SEE-EECCTTTT---CCC-S--
T ss_pred ccCeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ec-CHHHHhCcCChhhcCccEE-eeCCCCCcccCCCCCCCe
Confidence 4567777766554 56998885 33577888776 22 21111 11224555 66 45577665 4 679
Q ss_pred EEEEEchhHHhhhCCCC----------Cce-eeccccccCCCc-cCCchH----HH-HHHHHHHHHHHHhhCCHHHHHHH
Q psy8733 336 TVVIVREDLLEYALPIT----------PTV-FHFKINADNNSV-YNTPPT----FV-VHVIQRVFAWIKRQGGLAKMEQN 398 (621)
Q Consensus 336 g~livr~~ll~~~~~~~----------P~~-ld~~~~~~~~s~-~~TP~v----~~-I~aL~~aL~~i~~~gGl~~i~~r 398 (621)
|++.+|+++..+++... +.| +.+.....+-.+ --|.|+ .+ ......-+-++-.+ |+.++.++
T Consensus 271 G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~-GL~~iA~~ 349 (429)
T PF02347_consen 271 GFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPE-GLREIAER 349 (429)
T ss_dssp EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred eeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHH-HHHHHHHH
Confidence 99999999876653210 111 111110000001 013332 12 12223334455556 89999999
Q ss_pred HHHHHHHHHHHHHcc
Q psy8733 399 SLQKSVLLYQEIDNS 413 (621)
Q Consensus 399 ~~~la~~L~e~L~~~ 413 (621)
...++.++.+.|.+.
T Consensus 350 ~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 350 IHLNAHYLAERLKKI 364 (429)
T ss_dssp HHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999986
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.4 Score=49.86 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=73.6
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCCCccc----cccc----ceEEeccccccC--CC
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRKFD----VSKF----GVIIAGAQKNIG--PA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~pID----v~~~----gvl~asaqK~lG--P~ 333 (621)
+..+|.+-..-...|.+.|. +++++|+++|+|=+++ |- ... .+.+ |++++ -|.+| -|
T Consensus 246 ~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-Gf-R~g~~ga~~~~gv~PDi~t~--gK~lggG~P 321 (474)
T PLN02482 246 EIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GF-RIAYGGAQEYFGITPDLTTL--GKVIGGGLP 321 (474)
T ss_pred ceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Ce-ecCcchHhHHhCCCCCEEEe--cchhhCCCc
Confidence 45555544444445666652 4568999999999984 32 111 0112 24444 58884 22
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++.+.+.+..+.+ ..++++-. .....+..++|+.+.+. .+.++..++.++|+++|.++
T Consensus 322 -igav~g~~ei~~~~~~~~~~~--------~~~T~~gn-pl~~aAala~L~~l~~~----~~~~~~~~~g~~l~~~L~~l 387 (474)
T PLN02482 322 -VGAYGGRREIMEMVAPAGPMY--------QAGTLSGN-PLAMTAGIHTLKRLQQP----GTYEYLDKITKKLIQGILEA 387 (474)
T ss_pred -eEEEEEcHHHHHhhccCCCcc--------cccCcchh-HHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHHHH
Confidence 788899999987653211111 12344433 33455566789988764 35667777888888888765
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=3.5 Score=46.38 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=79.6
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--CC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--PA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P~ 333 (621)
++..+|.+-......|+..|- +++++|+++|+|=+|+ +|- ..+-.+.+| +++.| |.+| --
T Consensus 214 ~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~ 291 (459)
T PRK05965 214 DNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVA--KGLTSGYV 291 (459)
T ss_pred CceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEec--hhhccCCc
Confidence 345666655554555776652 4578999999999987 432 122233343 66664 8883 21
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
=+|.+++++++.+...+..+.. ......++|+--|+ +..+..++|+.+.++ ++.++.+++.++|.+.|.++
T Consensus 292 Pi~av~~~~~i~~~~~~~~~~~----~~~~h~~T~~gnpl-~~Aaa~a~L~~l~~~----~l~~~~~~~g~~l~~~l~~l 362 (459)
T PRK05965 292 PMGAVLMSDHVYQGIADGAGAA----APVGHGYTYSAHPV-SAAVGLEVLRLYHEG----GLLANGQKAGPRFAAGLDAL 362 (459)
T ss_pred ceeEEEEcHHHHHHHhcccccc----ccccccCCCCCCHH-HHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHhh
Confidence 2889999999987553211000 00012455654444 455666689999876 35556777888888888765
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.4 Score=47.97 Aligned_cols=70 Identities=11% Similarity=0.015 Sum_probs=42.0
Q ss_pred CCceEEEEecccccccccccc-----c---cc-----cCCCcEEEecccc-c--CCCc-cc-----ccccc-eE---Eec
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----I---PD-----SQGIPLVSDMSSN-F--LSRK-FD-----VSKFG-VI---IAG 325 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i---~~-----~~g~llvvDavSs-~--G~~p-ID-----v~~~g-vl---~as 325 (621)
+..+++.++...|+||...+. + ++ .+++++|+|-+=. + ...+ .+ .+..+ ++ +.|
T Consensus 145 ~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s 224 (388)
T PRK08637 145 KGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDG 224 (388)
T ss_pred CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEecc
Confidence 344566677678999998873 2 22 2789999998532 1 1111 11 12223 32 238
Q ss_pred cccccCCCc--cEEEEEc
Q psy8733 326 AQKNIGPAG--ITVVIVR 341 (621)
Q Consensus 326 aqK~lGP~G--lg~livr 341 (621)
.=|.++.+| +|.+++.
T Consensus 225 ~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 225 ATKEEFVWGFRVGFITFG 242 (388)
T ss_pred ccccCCCcccceEEEEEc
Confidence 889888777 6777754
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.046 Score=58.60 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=108.7
Q ss_pred hHHHHHhhccccc-ccCCcEEeeecHhHh-hhcCCC---C-CceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCC
Q psy8733 448 FFGVIIAGAQKNI-GPAGITVVIVREDLL-EYALPI---T-PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG 521 (621)
Q Consensus 448 ~~~~~~a~~qk~~-GpaGl~v~iv~~~~l-~~~~~~---~-p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg 521 (621)
..|++.++.||-+ ||.|.++++++++.. ...... . ...++........--..|||+..++.+...|+|+.+. |
T Consensus 189 ~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~-g 267 (376)
T TIGR01977 189 AIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKI-G 267 (376)
T ss_pred CCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHh-C
Confidence 4688899999987 499999999999862 111100 0 0000000001111224699999999999999999865 7
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCccc-ccCCCC----------Cccc-HHHHHHHHHc-cCccccCC------------
Q psy8733 522 LAKMEQNSLQKSVLLYQEIDNSDKFYE-CPVQAG----------FPLD-ELFLKEAKAH-NMIQLKGH------------ 576 (621)
Q Consensus 522 ~~~~~~~~~~ka~~lY~~id~~~~~~~-~~v~~~----------~~~~-~~~~~~~~~~-~i~~~~g~------------ 576 (621)
++.+.++..+.++.+++.|.+.+++-. .+.++. ...+ .++.+.+.++ ||....|+
T Consensus 268 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~ 347 (376)
T TIGR01977 268 IANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGT 347 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCC
Confidence 999999999999999999987654311 111110 0122 4577888877 99977765
Q ss_pred CCCCccceeeccCCCHHHHHHHHHHHHH
Q psy8733 577 RLVGGIRASIYNAITVDEAVILVKFMKE 604 (621)
Q Consensus 577 ~~~~~~r~~~~~a~~~~~~~~l~~~~~~ 604 (621)
...+.||++.-+.+|.+|++.|++.|++
T Consensus 348 ~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 348 FATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 1357799999999999999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=3.2 Score=46.74 Aligned_cols=127 Identities=10% Similarity=0.090 Sum_probs=72.3
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCCCcc---ccccc----ceEEeccccccC--CCc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLSRKF---DVSKF----GVIIAGAQKNIG--PAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~~pI---Dv~~~----gvl~asaqK~lG--P~G 334 (621)
+..+|.+-..-...|+..| + +++++|+++|+|=+++-..+.= -.+.+ |+++. -|.+| ---
T Consensus 222 ~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~--gK~lggG~~P 299 (460)
T PRK12403 222 NVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSI--AKGLTSGYVP 299 (460)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEE--cccccccccc
Confidence 4555555444444566665 1 4678999999999986332211 11233 35554 58884 212
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSL-QKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~-~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+....+ ...++++- |..+..+..++|+.+.++ + +.++.+ ++.++|++.|.++
T Consensus 300 iga~v~~~~i~~~~~~~~~~~-------~~~~T~~g-nPl~~Aaala~L~~i~~~-~---l~~~~~~~~g~~l~~~L~~l 367 (460)
T PRK12403 300 MGGLVLSKRIAEALVEQGGVF-------AHGLTYSG-HPVAAAVAIANLKALRDE-G---VVTRVKDDTGPYLQRCLREV 367 (460)
T ss_pred eEEEEECHHHHHHHhcCCCcc-------ccCCCCCC-CHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHH
Confidence 667778988876543211111 12344433 345566777889999876 4 344453 5666777766643
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.054 Score=58.89 Aligned_cols=158 Identities=17% Similarity=0.136 Sum_probs=112.3
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCC--ceeeeee--------cccCCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITP--TVFHFKI--------NADNNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p--~~~~y~~--------~~~~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|+..+|.+|-+||.|+++++++++++++..+... .+.++.. .+.... .-|||+.+++-+...++|+.+
T Consensus 210 ~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~GT~~~~~~~a~~~al~~l~~ 288 (398)
T TIGR03392 210 IDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFE-AGTPNIAGVIGLSAALEWLTD 288 (398)
T ss_pred CCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhcc-CCCCCHHHHHHHHHHHHHHHH
Confidence 46667899998999999999999999876433210 0000000 001111 359999999999999999965
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCccccc-CCC-------CCcccHHHHHHHHHccCccccCC----------CCCC
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP-VQA-------GFPLDELFLKEAKAHNMIQLKGH----------RLVG 580 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~-v~~-------~~~~~~~~~~~~~~~~i~~~~g~----------~~~~ 580 (621)
. |++.++++..+-++.+++.+++.+++-... ... ......++.+.++++||....|. +..|
T Consensus 289 ~-g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~ 367 (398)
T TIGR03392 289 I-DIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSG 367 (398)
T ss_pred h-CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCC
Confidence 4 688999999999999999998765431110 010 00123568888899999876665 2246
Q ss_pred ccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 581 GIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 581 ~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
.||+|.-.-.|.+|++.|++.|++..++
T Consensus 368 ~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 368 TLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred EEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 7999998889999999999999987664
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.17 Score=54.97 Aligned_cols=122 Identities=18% Similarity=0.338 Sum_probs=79.4
Q ss_pred Eecccccccccccc-----c---cccCCCcEEEec-ccccCCCcccccccc-----------eEEeccccccCCCc--cE
Q psy8733 279 YCDNETVDGVEFNY-----I---PDSQGIPLVSDM-SSNFLSRKFDVSKFG-----------VIIAGAQKNIGPAG--IT 336 (621)
Q Consensus 279 ~thnET~tGv~~p~-----i---~~~~g~llvvDa-vSs~G~~pIDv~~~g-----------vl~asaqK~lGP~G--lg 336 (621)
+|||- ||+-... + .++++.+-++|. -|.|+.. ++-|.++ +++.|.-|++|--| +|
T Consensus 180 CcHNP--TG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVG 256 (396)
T COG1448 180 CCHNP--TGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVG 256 (396)
T ss_pred CCCCC--CCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccc
Confidence 66754 5886552 2 347888888996 5888887 7776653 77888899997333 33
Q ss_pred EEE---EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-------HHHhhCCHHHHHHHHHHHHHHH
Q psy8733 337 VVI---VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-------WIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 337 ~li---vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-------~i~~~gGl~~i~~r~~~la~~L 406 (621)
.+. =+.+...+.....+ ..-+..|-.||..+....+..|+ |..| ++.|.+|..++...+
T Consensus 257 a~~vva~~~~~a~~v~sqlk--------~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~E---l~~Mr~Ri~~mR~~l 325 (396)
T COG1448 257 ALSVVAEDAEEADRVLSQLK--------AIIRTNYSNPPAHGAAVVATILNNPELRAEWEQE---LEEMRQRILEMRQAL 325 (396)
T ss_pred eeEEEeCCHHHHHHHHHHHH--------HHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 332 22333332211000 11245677888888777766654 5443 789999999999999
Q ss_pred HHHHHccC
Q psy8733 407 YQEIDNSD 414 (621)
Q Consensus 407 ~e~L~~~~ 414 (621)
.+.|.+.+
T Consensus 326 v~~L~~~~ 333 (396)
T COG1448 326 VDALKALG 333 (396)
T ss_pred HHHHHhhC
Confidence 99998853
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=2 Score=48.27 Aligned_cols=131 Identities=12% Similarity=0.117 Sum_probs=77.1
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--CC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--PA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P~ 333 (621)
+++.+|.+-......|+..|- +++++|+++|+|=+|+ +|- ..+-.+.+| +++.| |.+| -.
T Consensus 219 ~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~ 296 (461)
T PRK07482 219 DTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVA--KGLTSAYA 296 (461)
T ss_pred CcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEc--cccccCcc
Confidence 345666655554555777552 4578999999999987 432 112223343 66664 8883 22
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
-+|.+++++++.+.+....+. .......++|+- |..+..+..++|+.+.+. + +.++.+++.++|.+.|.++
T Consensus 297 Pi~av~~~~~i~~~~~~~~~~----~~~~~h~~T~~g-npl~~Aaa~a~L~~~~~~-~---l~~~~~~~g~~l~~~L~~l 367 (461)
T PRK07482 297 PLSGSIVGEKVWDVLEQGSDE----HGAIGHGWTYSG-HPICAAAALANLDILERE-N---LVGNAAEVGAYFRARLRAA 367 (461)
T ss_pred ccceeeecHHHHHHHhccccc----CCccccCCCCCc-CHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHH
Confidence 378888999887655321110 000112345543 334566777889999876 3 4455566777777777653
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=1 Score=50.36 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=77.8
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEeccc-ccCC--Ccccccccc----eEEeccccccC---CC
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSS-NFLS--RKFDVSKFG----VIIAGAQKNIG---PA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavS-s~G~--~pIDv~~~g----vl~asaqK~lG---P~ 333 (621)
+..+|.+-......|+..| + +++++|+++|+|=++ ++|. ...-.+.+| ++++ =|.+| -|
T Consensus 215 ~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~--gK~l~gG~~P 292 (442)
T PRK13360 215 TIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTC--AKGLTNGAIP 292 (442)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeee--eeccccCccc
Confidence 4555555444444566666 2 456899999999998 5643 122223333 4544 48883 22
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++.+......+....+ -..++++.. .....+..++|+.+.+. + +.++.+++.+++++.|.++
T Consensus 293 -~gav~~~~~i~~~~~~~~~~~~~~----~~~~T~~g~-pl~~aaa~a~L~~l~~~-~---l~~~~~~~g~~l~~~l~~l 362 (442)
T PRK13360 293 -MGAVFVSSEIHDAFMQGPEAGIEF----FHGYTYSGH-PLACAAALATLDLYERE-G---LLTRAARLAPYWEDALHSL 362 (442)
T ss_pred -eEEEEEcHHHHHHhhcCCcccccc----ccCCCCCCC-HHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHh
Confidence 777888999876543211100000 123566544 44567777789999876 4 4567777888888888765
Q ss_pred C
Q psy8733 414 D 414 (621)
Q Consensus 414 ~ 414 (621)
.
T Consensus 363 ~ 363 (442)
T PRK13360 363 R 363 (442)
T ss_pred h
Confidence 3
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.7 Score=51.08 Aligned_cols=123 Identities=16% Similarity=0.223 Sum_probs=74.2
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccccCCC---ccccccc----ceEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSR---KFDVSKF----GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~---pIDv~~~----gvl~asaqK~lGP~G- 334 (621)
++..+|.+-.....+|+..+- +++++|+++|+|=+++-..+ ..-++.+ |++++ =|.+| +|
T Consensus 196 ~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~l--sK~l~-~G~ 272 (420)
T TIGR00700 196 NNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITT--AKSLA-DGL 272 (420)
T ss_pred CcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEe--ecccc-CCc
Confidence 356666655555556776652 45689999999999773322 1122223 35544 58886 23
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+ ....++++.. .....+..++|+++.+. + +.++.+++.+++++.|+++
T Consensus 273 pig~v~~~~~i~~~~~~-----------~~~~~T~~~~-pl~~aaa~a~l~~l~~~-~---~~~~~~~~g~~l~~~L~~l 336 (420)
T TIGR00700 273 PLSGVTGRAEIMDAPAP-----------GGLGGTYAGN-PLACAAALAVLAIIESE-G---LIERARQIGRLVTDRLTTL 336 (420)
T ss_pred ceEEEEecHHHHhhcCC-----------CCcCCCCCcC-HHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHH
Confidence 7889999998765432 0123455433 44566777788988765 4 3445555666677766654
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.073 Score=57.94 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=113.3
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCC--cee---eeee-----cccCCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITP--TVF---HFKI-----NADNNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p--~~~---~y~~-----~~~~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|+..+|.+|-+||.|++++++++++++...+..- ..+ +|.. ...... .-|||+.+++.+...++|+.+
T Consensus 213 ~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~Gt~~~~~~~al~~al~~l~~ 291 (401)
T PRK10874 213 IDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFE-AGTPNVAGVIGLSAALEWLAD 291 (401)
T ss_pred CCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhcc-CCCcCHHHHHHHHHHHHHHHH
Confidence 56677899998899999999999999887443210 111 1110 011111 359999999999999999987
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCccccc-CCCC------Cc-ccHHHHHHHHHccCccccCCC----------CCC
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP-VQAG------FP-LDELFLKEAKAHNMIQLKGHR----------LVG 580 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~-v~~~------~~-~~~~~~~~~~~~~i~~~~g~~----------~~~ 580 (621)
. |.+.++++..+-++.+.+.+.+.+++-... .... .. ...++.+.++++||+...|.. ..|
T Consensus 292 ~-g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~ 370 (401)
T PRK10874 292 I-DINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTG 370 (401)
T ss_pred h-CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCC
Confidence 6 577888888888899999998766531111 0110 01 235677888999999766542 247
Q ss_pred ccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 581 GIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 581 ~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
.||+|.-.-.|.||+++|++.|+++.++
T Consensus 371 ~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 371 TLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999987653
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=3.7 Score=46.15 Aligned_cols=130 Identities=13% Similarity=0.131 Sum_probs=77.4
Q ss_pred CCceEEEEec-ccccccccccc---------ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccC--C
Q psy8733 272 PEASYLYYCD-NETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIG--P 332 (621)
Q Consensus 272 ~~t~~V~~th-nET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lG--P 332 (621)
+++.+|.+-. .....|+..+- +++++|+++|+|=+|+ +|-. .+-.+.+| +++.| |.+| -
T Consensus 220 ~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~g--Kgl~gG~ 297 (453)
T PRK06943 220 GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLS--KGISGGY 297 (453)
T ss_pred CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeee--hhhccCc
Confidence 3555665544 23445776652 4568999999999986 5421 11123343 66664 8883 2
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
-=+|.+..++++.+...+..+. ......++|+ -|..+..+..++|+.+.++ + +.++.+++.++|.+.|.+
T Consensus 298 ~Pi~av~~~~ei~~~~~~~~~~-----~~~~~~~T~~-gnpl~~aaa~a~L~~i~~~-~---l~~~~~~~G~~l~~~L~~ 367 (453)
T PRK06943 298 LPLSLVLSRDAIFAAFYDDDVT-----RGFLHSHSYT-GNPLACRAALATLDLFAED-D---VLARNARKSARLRAALAP 367 (453)
T ss_pred ccceEEEEcHHHHHhhcccCcc-----CCccCCCCCC-CCHHHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHH
Confidence 1288999999987655321110 0001234553 2445567777889999876 3 455666777788887776
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 368 l 368 (453)
T PRK06943 368 L 368 (453)
T ss_pred H
Confidence 4
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.07 Score=58.31 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=104.9
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++.+|+||.+||.|+++++++++.+.+..+. +. ...+. ..-...|||+..++-++..|+++++ +++.+.+
T Consensus 194 ~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~---~~-g~~~~-~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~ 266 (402)
T TIGR02006 194 KVDLMSISGHKIYGPKGIGALYVRRKPRVRLEAL---IH-GGGHE-RGMRSGTLPTHQIVGMGEAFRIAKE--EMAQDTA 266 (402)
T ss_pred CCCEEEEehhhhcCCCceEEEEEccCCCCCCCce---ec-CCCcc-CCccCCCccHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 4688889999999999999999999877653332 11 11111 1223479999999999999999875 5888899
Q ss_pred HHHHHHHHHHHHHhccCCccc--ccC--CCC---C--c-ccH-HHHHHHHHccCccccCC--C-----------------
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYE--CPV--QAG---F--P-LDE-LFLKEAKAHNMIQLKGH--R----------------- 577 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~--~~v--~~~---~--~-~~~-~~~~~~~~~~i~~~~g~--~----------------- 577 (621)
+.++-++.+.+.|...++... .+. .+. . . ... .+...+ +||....|. .
T Consensus 267 ~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~ 344 (402)
T TIGR02006 267 HVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGIND 344 (402)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCcCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCCh
Confidence 999999999999976554211 010 000 0 1 111 233222 355432221 1
Q ss_pred --CCCccceeeccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 578 --LVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 578 --~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
..|.+|+|..+..|.||++.|++.|+++.++..
T Consensus 345 ~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 345 ELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR 379 (402)
T ss_pred hhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 136799999999999999999999999887653
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=2.7 Score=47.29 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=63.5
Q ss_pred ccccCCCcEEEecccccCCCcccc---cccc----eEEeccccccCC--CccEEEEEchhHHhhhCCCCCceeecccccc
Q psy8733 293 IPDSQGIPLVSDMSSNFLSRKFDV---SKFG----VIIAGAQKNIGP--AGITVVIVREDLLEYALPITPTVFHFKINAD 363 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~pIDv---~~~g----vl~asaqK~lGP--~Glg~livr~~ll~~~~~~~P~~ld~~~~~~ 363 (621)
+++++|+++|+|=+|+-.++.=.+ +.+| +++. -|.+|- -=+|.++.++++.+.. . ..+ .
T Consensus 257 lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~--gKgl~gG~~P~~av~~~~~i~~~~-~--~~~-------~ 324 (459)
T PRK06082 257 ICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCI--GKGLGGGLVPIAAMITKDKYNTAA-Q--ISL-------G 324 (459)
T ss_pred HHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEe--cccccCCCCcceEEEEcHHHHhhc-c--CCC-------C
Confidence 456899999999998733332211 3343 5554 588842 1178888888865321 1 000 1
Q ss_pred CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 364 NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 364 ~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.++++..|+. ..+..++|+.+.++ + +.++.+++.++|++.|+++
T Consensus 325 -~~T~~gnpl~-~aaa~a~L~~l~~~-~---l~~~~~~~g~~l~~~L~~l 368 (459)
T PRK06082 325 -HYTHEKSPLG-CAAALATIEVIEQE-G---LLEKVKADSQFMRERLLEM 368 (459)
T ss_pred -CCCCCcCHHH-HHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHHH
Confidence 1455544444 56666789998775 3 5567777888888888764
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=94.18 E-value=3.4 Score=46.47 Aligned_cols=127 Identities=12% Similarity=0.060 Sum_probs=72.9
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc----cCCCccccccc----ceEEeccccccC--CC
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN----FLSRKFDVSKF----GVIIAGAQKNIG--PA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs----~G~~pIDv~~~----gvl~asaqK~lG--P~ 333 (621)
+..+|.+=......|...|. +++++|+++|+|=+++ +|... ..+ |+++. -|.+| -|
T Consensus 218 ~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~---~~~gv~PDi~t~--gK~lggG~P 292 (453)
T PRK07046 218 DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT---RAHGLEPDFLVV--GKPIAGGVP 292 (453)
T ss_pred CeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh---HHhCCCccceee--hhhhcCCCc
Confidence 44555443333334555552 4568999999999995 44321 122 35554 48883 33
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.+..|+++.+.+.+...... .......++++- |.....+..++|+.+.+. + ..++.+++.++|++.|.+
T Consensus 293 -i~av~g~~~i~~~~~~~~~~~~--~~~~~~~~T~~g-npl~~aa~~a~L~~l~~~-~---~~~~~~~~g~~l~~~L~~ 363 (453)
T PRK07046 293 -CAVYGFSAELAERAQAAKASAP--PGHSGIGTTLSA-NALAMAAMRATLAEVMTE-A---AYAHMLALAARLAAGLRA 363 (453)
T ss_pred -ceeeeehHHHHHHHhhccccCC--CCCceeCCCCcc-cHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHH
Confidence 7889999999876543111000 000112345543 334466777788888665 3 355666677777777765
|
|
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.51 Score=51.73 Aligned_cols=131 Identities=14% Similarity=0.125 Sum_probs=80.5
Q ss_pred CCCCCceEEEEecccccccccccc--------ccccCCCcEEEecccc---cCCCcc------------cccccceEEec
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN---FLSRKF------------DVSKFGVIIAG 325 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs---~G~~pI------------Dv~~~gvl~as 325 (621)
+.+.+.+.|.++.-+|+-|+..+- .+..+++.+|+|=+=+ ++...+ |.+.. -++-|
T Consensus 222 ~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rv-Hivys 300 (471)
T KOG0256|consen 222 KLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRV-HIVYS 300 (471)
T ss_pred HhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcE-EEEEE
Confidence 456789999999999999998872 2456889999996432 222111 11111 45666
Q ss_pred cccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCch--HHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy8733 326 AQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPP--TFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 401 (621)
Q Consensus 326 aqK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~--v~~I~aL~~aL~~i~~~gGl~~i~~r~~~ 401 (621)
--|=+|-|| +|++|-..+-+-.+ +.+-+.|+--+ +.-+.+--+.=+|+.++ =+..-.+|.+.
T Consensus 301 lSKD~GlpGfRvGviYS~ne~Vvsa-------------A~kmssf~~vSs~tQ~~la~LLSD~~f~~~-yl~en~~Rl~~ 366 (471)
T KOG0256|consen 301 LSKDFGLPGFRVGVIYSNNEDVVSA-------------ATKMSSFGLVSSQTQYLLASLLSDEEFTRE-YLRENNKRLRI 366 (471)
T ss_pred eccccCCCceEEEEEEecChHHHHH-------------HHHHhhccCCcHHHHHHHHHHhchHHHHHH-HHHHHHHHHHH
Confidence 779999888 57777665543221 11222333222 22222222222555554 47788888888
Q ss_pred HHHHHHHHHHccC
Q psy8733 402 KSVLLYQEIDNSD 414 (621)
Q Consensus 402 la~~L~e~L~~~~ 414 (621)
..+++.++|++++
T Consensus 367 rh~~~~~gLk~lg 379 (471)
T KOG0256|consen 367 RHRYIVEGLKALG 379 (471)
T ss_pred HHHHHHhhHHhcC
Confidence 8899999999986
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=7.9 Score=43.57 Aligned_cols=130 Identities=9% Similarity=0.087 Sum_probs=77.3
Q ss_pred CCceEEEEec-ccccccccccc---------ccccCCCcEEEecccc-cCCCcc---ccccc----ceEEeccccccC--
Q psy8733 272 PEASYLYYCD-NETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRKF---DVSKF----GVIIAGAQKNIG-- 331 (621)
Q Consensus 272 ~~t~~V~~th-nET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~pI---Dv~~~----gvl~asaqK~lG-- 331 (621)
++..+|.+-. .....|+..+- +++++|+++|+|=+++ +| +.= -.+.+ |+++. -|.+|
T Consensus 222 ~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~G-RtG~~~a~~~~gv~PDiv~~--gK~l~gG 298 (460)
T PRK06916 222 EEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFG-RTGKMFACEHENVTPDIMTA--GKGLTGG 298 (460)
T ss_pred CcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCC-cCchhhHHHhcCCCCCeeee--ehhhhcC
Confidence 3455555543 23444666542 4568999999999976 43 211 11223 35555 48883
Q ss_pred CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 332 P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
---+|.+..++++.+...+.... .......++++..|+ ...+..++|+.+.+. + +.++.+++.+++++.|+
T Consensus 299 ~~Pi~av~~~~ei~~~~~~~~~~----~~~~~~~~T~~gnpl-~~aaa~a~l~~l~~~-~---l~~~~~~~g~~l~~~l~ 369 (460)
T PRK06916 299 YLPIAITVTTDEIYNAFYGDYEE----QKTFFHGHSYTGNPL-GCAVALANLELYEKT-N---LIEQVARKTEYVATQLE 369 (460)
T ss_pred ccccceeeecHHHHHHhhccccc----cCccccCCCCCCCHH-HHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHH
Confidence 22288999999987654321000 000112346655444 466677788988775 3 45677888888888888
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 370 ~l 371 (460)
T PRK06916 370 DL 371 (460)
T ss_pred Hh
Confidence 75
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.9 Score=45.61 Aligned_cols=101 Identities=13% Similarity=0.271 Sum_probs=59.4
Q ss_pred CCCceEEEEecccccccccccc---------ccccCCCcEEEecccccCC---Ccccccccc----eEEeccccccC--C
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLS---RKFDVSKFG----VIIAGAQKNIG--P 332 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~---~pIDv~~~g----vl~asaqK~lG--P 332 (621)
.+++++|.+-+..-..|+..+- +++++|+++|+|-+|+ |- .....+.++ +++. -|.+| -
T Consensus 160 ~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~t-G~RtG~~~a~~~~gv~PDiv~~--gK~lggG~ 236 (364)
T PRK04013 160 TKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQS-GLRTGKFLAIEHYKVEPDIVTM--GKGIGNGV 236 (364)
T ss_pred cCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-cCCCCchhHHHhcCCCCCEEEe--cccccCCc
Confidence 3567777776665555665441 4578999999999987 21 122333444 5555 48883 2
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCH
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGL 392 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl 392 (621)
| ++.++.++++ . +. ...++++--| .+..+..++|+.+.++ ++
T Consensus 237 P-~~a~~~~~~~----~---~~--------~~~~T~~gnp-~~~aaa~a~l~~i~~~-~l 278 (364)
T PRK04013 237 P-VSLTLTNFDV----E---RG--------KHGSTFGGNP-LACKAVAVTLRILRRE-RL 278 (364)
T ss_pred e-eEEEEecccc----c---CC--------CcCCCCCcCH-HHHHHHHHHHHHHHhc-cH
Confidence 2 5666666553 0 10 1234554333 4556666789999887 54
|
|
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.98 Score=49.83 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=88.8
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCC-Ccccc---------cccceEEeccccccC-CCccEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS-RKFDV---------SKFGVIIAGAQKNIG-PAGITV 337 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~-~pIDv---------~~~gvl~asaqK~lG-P~Glg~ 337 (621)
+-+|..|...|+.|..-|+ +++.++..++|||+= |+ .-+.. +..+-+....||++| |-=-+.
T Consensus 254 Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAw--GGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa 331 (510)
T KOG0629|consen 254 PFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAW--GGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSA 331 (510)
T ss_pred CeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeeccc--ccccccChhhHhhccCccccCceeecHHHhhcCcchhhH
Confidence 5788999999999998886 456899999999973 33 22221 223478899999998 766666
Q ss_pred EEEchh-HHhhhCCCCCcee-------eccccc-cCCCccC-CchHH-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8733 338 VIVRED-LLEYALPITPTVF-------HFKINA-DNNSVYN-TPPTF-VVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 338 livr~~-ll~~~~~~~P~~l-------d~~~~~-~~~s~~~-TP~v~-~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L 406 (621)
...|.+ +++++......|+ |-.... ++...-+ --+++ .++.+.+ +..+|.++...+..++|+++
T Consensus 332 ~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwka-----KG~~Gfe~~v~k~~~lA~yl 406 (510)
T KOG0629|consen 332 FLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKA-----KGTQGFEAQVDKCLRLAEYL 406 (510)
T ss_pred HHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHh-----cccccHHHHHHHHHHHHHHH
Confidence 677755 4666554333332 111000 1111112 22333 2222110 12238999999999999999
Q ss_pred HHHHHccCCcccCc
Q psy8733 407 YQEIDNSDKFYECP 420 (621)
Q Consensus 407 ~e~L~~~~g~~~~~ 420 (621)
++.|.+-+|++...
T Consensus 407 ~~~lrer~~~~~l~ 420 (510)
T KOG0629|consen 407 YDRLREREGFEMLF 420 (510)
T ss_pred HHHHHhcccceehh
Confidence 99999998877654
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.17 Score=54.80 Aligned_cols=151 Identities=13% Similarity=0.160 Sum_probs=106.7
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcC--------
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQG-------- 520 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~g-------- 520 (621)
.|++.+|.+|.+|| +++++++++++++...+..... .|...+.. -...|||+..++.+...++++.+.|
T Consensus 209 ~d~~~~s~~K~~g~-~~G~l~~~~~~~~~l~~~~~~~-~~~~~~~~-~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 285 (397)
T TIGR01976 209 ADFLTCSAYKFFGP-HMGILWGRPELLMNLPPYKLTF-SYDTGPER-FELGTPQYELLAGVVAAVDYLAGLGESANGSRR 285 (397)
T ss_pred CCEEEEechhhcCC-ceEEEEEcHHHHhhCCCccccC-ccCCCcch-hcCCCCCHHHHHHHHHHHHHHHHhCcccccchh
Confidence 46677899999997 4899999999987654432221 13332222 1236999999999999999998887
Q ss_pred -----ChHHHHHHHHHHHHHHHHHHhccCCc--cccc-CC-C--------CCcccHHHHHHHHHccCccccC--C-----
Q psy8733 521 -----GLAKMEQNSLQKSVLLYQEIDNSDKF--YECP-VQ-A--------GFPLDELFLKEAKAHNMIQLKG--H----- 576 (621)
Q Consensus 521 -----g~~~~~~~~~~ka~~lY~~id~~~~~--~~~~-v~-~--------~~~~~~~~~~~~~~~~i~~~~g--~----- 576 (621)
+++.+.++..+-++.+++.+.+.+++ +... .. . ......++.+.++++||+.-.| +
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~ 365 (397)
T TIGR01976 286 ERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYAVRLL 365 (397)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCccchHHHH
Confidence 37888888899999999998765432 1110 00 0 0012345888899999997765 1
Q ss_pred ------CCCCccceeeccCCCHHHHHHHHHHH
Q psy8733 577 ------RLVGGIRASIYNAITVDEAVILVKFM 602 (621)
Q Consensus 577 ------~~~~~~r~~~~~a~~~~~~~~l~~~~ 602 (621)
...+.||+|.-.-+|.||++.|++.|
T Consensus 366 ~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 366 RRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 12456999999999999999998753
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.14 Score=55.32 Aligned_cols=153 Identities=13% Similarity=0.059 Sum_probs=110.8
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++.+|.+|-+||.|++++++|+.+. .-|.+..... .......|||+..++.++..|+++.+ +++.+.+
T Consensus 192 ~~D~~~~s~~K~~gp~G~g~l~vr~~~~-----~~p~~~g~~~--~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~ 262 (382)
T TIGR03403 192 GVDFLSFSAHKFHGPKGVGGLYIRKGVE-----LTPLFHGGEH--MGGRRSGTLNVPYIVAMGEAMRLANE--YLDFEKS 262 (382)
T ss_pred CCCEEEEcchhhCCCCceEEEEECCCCC-----CCCcccCCCC--CCCcccCCcChHHHHHHHHHHHHHHH--hHHHHHH
Confidence 4688889999988999999999998751 2232211111 12234589999999999999998876 4888999
Q ss_pred HHHHHHHHHHHHHhccCCcccc-cCC---CC-------CcccHHHHHHHHHccCccccCCC-------------------
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYEC-PVQ---AG-------FPLDELFLKEAKAHNMIQLKGHR------------------- 577 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~~-~v~---~~-------~~~~~~~~~~~~~~~i~~~~g~~------------------- 577 (621)
+.++-.+.+++.+.+.+++... +.+ +. ..-...+.+.+.++||....|..
T Consensus 263 ~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~ 342 (382)
T TIGR03403 263 HVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADK 342 (382)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCCh
Confidence 9999999999999765432111 111 00 00234466778899999876631
Q ss_pred --CCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 578 --LVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 578 --~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
..+.||+|.-.-.|.||+++|++.|++..++-
T Consensus 343 ~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~ 376 (382)
T TIGR03403 343 ELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRL 376 (382)
T ss_pred HHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 12569999999999999999999999887653
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >KOG1401|consensus | Back alignment and domain information |
|---|
Probab=93.25 E-value=6.5 Score=43.39 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=64.4
Q ss_pred cccCCCcEEEecccccCCCcccc--cc-cce--EEeccccccC-CCccEEEEEchhHHhhhCCCCCceeeccccccCCCc
Q psy8733 294 PDSQGIPLVSDMSSNFLSRKFDV--SK-FGV--IIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSV 367 (621)
Q Consensus 294 ~~~~g~llvvDavSs~G~~pIDv--~~-~gv--l~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~ 367 (621)
+++.|++||-|=+|.=.++-=+. .+ +++ =.++.-|.|| --=+|...++++..+.+.+..+ + -++++
T Consensus 236 C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~-l-------~hg~T 307 (433)
T KOG1401|consen 236 CDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGGGLPIGATGVRDKVAEMISPGDH-L-------YHGGT 307 (433)
T ss_pred HhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeehhhccCCceeEEEeehHHHHhhcCCCCc-c-------ccCcc
Confidence 46889999999999732221111 01 110 0234458782 2227888999999887765444 1 12455
Q ss_pred cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 368 YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 368 ~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|+--| .+..+...+++|+.+-+-+.++.+..+.+.+.+++.+.+.
T Consensus 308 f~gnp-Lacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~ 352 (433)
T KOG1401|consen 308 FSGNP-LACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKT 352 (433)
T ss_pred cCCCh-hhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 53222 2334456688888765335666666666666666665543
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.24 E-value=2.2 Score=47.18 Aligned_cols=127 Identities=14% Similarity=0.194 Sum_probs=75.2
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccc--cCCCcccccccceEEeccccccC--CCccEEEEE-c
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSN--FLSRKFDVSKFGVIIAGAQKNIG--PAGITVVIV-R 341 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs--~G~~pIDv~~~gvl~asaqK~lG--P~Glg~liv-r 341 (621)
++|++|++=.-.|++--+.|+ +++++|+++|||-+=+ +...|+++- .|+++-|+=|.+| --=++.+++ +
T Consensus 148 ~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~G-aDIVvhSaTKyl~GHsDvl~G~v~~~ 226 (396)
T COG0626 148 PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELG-ADIVVHSATKYLGGHSDVLGGVVLTP 226 (396)
T ss_pred cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccChhhcC-CCEEEEeccccccCCcceeeeEEecC
Confidence 589999887777777777775 3457889999998633 344555543 3599999999994 223444444 4
Q ss_pred hh-HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 342 ED-LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 342 ~~-ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++ +++.+. +.+ +..+-..+..+..+.+...++ -+.-+.+++.+.+..+-+.|.+.+.+
T Consensus 227 ~~~~~~~~~------~~~-----~~~~G~~l~p~dA~l~lRGlk------TL~~Rm~~~~~nA~~IA~~L~~~p~V 285 (396)
T COG0626 227 NEELYELLF------FAQ-----RANTGAVLSPFDAWLLLRGLR------TLALRMERHNENALKIAEFLADHPKV 285 (396)
T ss_pred hHHHHHHHH------HHH-----HhhcCCCCCHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 44 443321 000 001112333333333222222 25566677777788888888887644
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=92.67 E-value=12 Score=41.45 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=69.0
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--cccccccc--eEEeccccccCCCc--c
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG--VIIAGAQKNIGPAG--I 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~g--vl~asaqK~lGP~G--l 335 (621)
++.++|.+-..-...|...+- +++++|+++|.|=+++ +|.. ..-++.++ .-+.+-=|.+|| | +
T Consensus 198 ~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~-G~ri 276 (425)
T PRK08088 198 EDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAG-GFPL 276 (425)
T ss_pred CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccC-CCcc
Confidence 345555544444444544431 3568999999999877 3221 11122222 113455699973 4 7
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|.++.++++.+.+... ....++.++ .....+..++|+.+... .+.++.+++.+++++.|.++
T Consensus 277 g~v~~~~~~~~~~~~~-----------~~~~t~~~~-~~~~~a~~~~l~~~~~~----~~~~~~~~~~~~~~~~l~~l 338 (425)
T PRK08088 277 AGVTGRAEVMDAIAPG-----------GLGGTYAGN-PIACAAALAVLKVFEQE----NLLQKANALGEKLKDGLLAI 338 (425)
T ss_pred eeeEecHHHHhhcCCC-----------CCCCCCCcC-HHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 9999999987655321 122344443 34566666677766443 34445555556666666543
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=6.7 Score=48.37 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=65.0
Q ss_pred ccccCCCcEEEeccc-ccCCCc--c-ccccc----ceEEeccccccC-CCccEEEEEchhHHhhhCCCCCceeecccccc
Q psy8733 293 IPDSQGIPLVSDMSS-NFLSRK--F-DVSKF----GVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINAD 363 (621)
Q Consensus 293 i~~~~g~llvvDavS-s~G~~p--I-Dv~~~----gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~ 363 (621)
+++++|+++|+|=+| ++|..= + -.+.+ |+++. =|.+| ---+|.++.++++.+.+.+. . +
T Consensus 773 lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~--gK~lg~G~Pl~av~~~~~i~~~~~~~-~-~-------- 840 (972)
T PRK06149 773 AVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITM--AKGMGNGHPLGAVITRREIAEALEAE-G-Y-------- 840 (972)
T ss_pred HHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEe--cccccCCeeeEEEEEcHHHHhhhccC-C-c--------
Confidence 456899999999999 454321 1 11223 35655 48884 11279999999987654321 1 1
Q ss_pred CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 364 NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 364 ~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
..++++- |..+..+..++|+.+.++ ++.++.+++.++|++.|.++
T Consensus 841 ~~sT~~g-nP~~~aaala~L~~i~~e----~l~~~~~~~G~~l~~~L~~l 885 (972)
T PRK06149 841 FFSSTGG-SPVSCRIGMAVLDVLREE----KLQENARRVGDHLKARLEAL 885 (972)
T ss_pred ccCCCCC-CHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 1133433 334455666789999876 45667777888888888765
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.59 E-value=4.2 Score=45.33 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=70.8
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-----------cCCCcccccccceEEeccccccC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-----------FLSRKFDVSKFGVIIAGAQKNIG 331 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-----------~G~~pIDv~~~gvl~asaqK~lG 331 (621)
++..+|.+=..-.--|++.|. +++++|+++|.|=+=+ .-...-|+ ++--|.+|
T Consensus 199 ~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDl-------ttlGKiIG 271 (432)
T COG0001 199 DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDL-------TTLGKIIG 271 (432)
T ss_pred CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcch-------hhhhhhhc
Confidence 456666655555555676663 4568999999996532 22222222 22236662
Q ss_pred -CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 332 -PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 332 -P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
--=+|.+-.|++.++...|..|.|. .+++.- |...+.+-.++|+.+.+..| ..++..+++++|++.|
T Consensus 272 GGlP~ga~gGr~eiM~~~~p~g~vyq--------aGT~sg-nplamaAG~atl~~l~~~~~---~y~~l~~~~~~L~~gl 339 (432)
T COG0001 272 GGLPIGAFGGRAEIMEQLAPLGPVYQ--------AGTLSG-NPLAMAAGLATLEELMTEEG---VYERLDALGERLAEGL 339 (432)
T ss_pred CCcceeeeccHHHHHhhhCCCCCccc--------cCCCCC-cHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHH
Confidence 1116788889999987766554432 223321 22455666677888876423 5566666666666666
Q ss_pred Hc
Q psy8733 411 DN 412 (621)
Q Consensus 411 ~~ 412 (621)
++
T Consensus 340 ~~ 341 (432)
T COG0001 340 RA 341 (432)
T ss_pred HH
Confidence 55
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=10 Score=42.37 Aligned_cols=128 Identities=15% Similarity=0.179 Sum_probs=75.2
Q ss_pred CCceEEEEecc-cccccccccc---------ccccCCCcEEEecccc-cCC--Cccccccc----ceEEecccccc--C-
Q psy8733 272 PEASYLYYCDN-ETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNI--G- 331 (621)
Q Consensus 272 ~~t~~V~~thn-ET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~l--G- 331 (621)
++..+|.+-.. ....|+..|- +++++|+++|+|=+++ +|- .-+-.+.+ |++++ -|.+ |
T Consensus 205 ~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~--gK~l~gG~ 282 (429)
T PRK06173 205 DEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCI--GKALTGGY 282 (429)
T ss_pred CcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCEEEe--ehhhhCCc
Confidence 35566655543 4445776542 4568999999999974 321 11112223 35554 5888 3
Q ss_pred CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 332 P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+| ++.++.++++.+.+.+.... .....+++. .|.....+..++|+.+.++ + +.++.+++.++|++.|.
T Consensus 283 ~p-~~a~~~~~~i~~~~~~~~~~------~~~~~~T~~-g~p~~~aaa~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~ 350 (429)
T PRK06173 283 LT-LSATITTEAIAQTICSGEAK------CFMHGPTFM-ANPLACAIAAESIRLLLES-P---WQQNIQRIEAQLKQELA 350 (429)
T ss_pred cc-cceEEecHHHHHHHhcCCCC------ccccCCCCC-cCHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHH
Confidence 33 57778888887654321000 001123443 3455667778889999876 3 36677778888888887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 351 ~~ 352 (429)
T PRK06173 351 PA 352 (429)
T ss_pred Hh
Confidence 64
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=3.4 Score=46.58 Aligned_cols=121 Identities=20% Similarity=0.280 Sum_probs=72.5
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--CCc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--PAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P~G 334 (621)
++.+|.+-......|+..|- +++++|+++|+|=+|+ +|- .-.-.+.+| +++.| |.+| -|
T Consensus 231 ~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~g--KglggG~P- 307 (464)
T PRK06938 231 LPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLS--KAIGGSLP- 307 (464)
T ss_pred ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEee--ccccCCCc-
Confidence 35555544333444666542 4568999999999987 431 111223333 66664 8883 22
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++ +... +. ...++++.-|+ +..+..++|+.+.++ ++.++.+++.++|.+.|+++
T Consensus 308 lsAv~~~~~~-~~~~---~~--------~~~~T~~gnpl-a~Aaa~a~L~~l~~~----~l~~~~~~~G~~l~~~L~~l 369 (464)
T PRK06938 308 LAVVVYREWL-DTWQ---PG--------AHAGTFRGNQM-AMAAGSATLRYIKEH----RLAEHAAAMGERLREHLRQL 369 (464)
T ss_pred eEEEeehhHh-hccC---CC--------CCCCCCCcCHH-HHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHH
Confidence 7888888774 3221 11 12456654444 466667789998775 45667777788888888764
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.23 Score=53.59 Aligned_cols=155 Identities=11% Similarity=0.037 Sum_probs=109.3
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++..|.+|-+||.|++++++++++. +.+... ... ......+.|||+..++.+...|+++.+ +++...+
T Consensus 190 ~~d~~~~s~~K~~gp~G~G~l~~~~~~~-----~~~~~~-~~~-~~~~~~~~t~~~~~~~a~~~al~~~~~--~~~~~~~ 260 (381)
T PRK02948 190 GIDSLSVSAHKIYGPKGVGAVYINPQVR-----WKPVFP-GTT-HEKGFRPGTVNVPGIAAFLTAAENILK--NMQEESL 260 (381)
T ss_pred CCCEEEecHHhcCCCCcEEEEEEcCCCC-----CCCccc-CCC-CCCCcCCCCccHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3678889999999999999999998751 111000 001 122345679999999999999999864 4788889
Q ss_pred HHHHHHHHHHHHHhccC-Ccccc----cCCCC------Cc-ccHHHHHHHHHccCccccCCC------------------
Q psy8733 528 NSLQKSVLLYQEIDNSD-KFYEC----PVQAG------FP-LDELFLKEAKAHNMIQLKGHR------------------ 577 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~-~~~~~----~v~~~------~~-~~~~~~~~~~~~~i~~~~g~~------------------ 577 (621)
+..+..+.+++.+.+.. ..+.. .+-+. .. -..++...++++||....|..
T Consensus 261 ~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~ 340 (381)
T PRK02948 261 RFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKT 340 (381)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCC
Confidence 99999999999998653 11100 00000 01 124467778889999776542
Q ss_pred ---CCCccceeeccCCCHHHHHHHHHHHHHHHHHcCC
Q psy8733 578 ---LVGGIRASIYNAITVDEAVILVKFMKEFRHKHSR 611 (621)
Q Consensus 578 ---~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~~ 611 (621)
..+.||+|.-.-+|.||+++|++.|++..++.-|
T Consensus 341 ~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 377 (381)
T PRK02948 341 YEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFYR 377 (381)
T ss_pred hHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 1356999999999999999999999988765433
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=91.87 E-value=7 Score=43.54 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=67.0
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCc-c-ccccc----ceEEeccccccCCCcc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRK-F-DVSKF----GVIIAGAQKNIGPAGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~p-I-Dv~~~----gvl~asaqK~lGP~Gl 335 (621)
.++.+|.+-......|++.+- +++++|+++|+|-+|+ +|..- . -.+.+ |+++.| |.+ ++.
T Consensus 217 ~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~g--K~~--~~~ 292 (431)
T TIGR03251 217 HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFG--KKT--QVC 292 (431)
T ss_pred CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEec--ccC--ccc
Confidence 567777777666667877642 4568999999999988 54431 0 11222 356554 333 333
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
|++ .++++.+.+.. .+.+.. ...++++ .|....++..++|+.+.+. ++ .++.+++.++|.+.|.+
T Consensus 293 g~~-~~~~i~~~~~~----~~~~~~--~~~~T~~-gnpl~~aaa~a~L~~l~~~-~l---~~~~~~~g~~l~~~L~~ 357 (431)
T TIGR03251 293 GIM-AGRRVDEVADN----VFAVPS--RLNSTWG-GNLVDMVRATRILEIIEEE-RL---VDNARVQGAHLLARLHE 357 (431)
T ss_pred eEE-ecchHHHhhhh----cccCcc--ccCCCCC-CCHHHHHHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHHHH
Confidence 444 44443221110 011111 1234543 3445567778899999876 43 33344445555555544
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.44 Score=52.15 Aligned_cols=154 Identities=16% Similarity=0.106 Sum_probs=102.1
Q ss_pred hHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCceeeeee-----------cccCCCccCCCchhHHHHHHHHHHH
Q psy8733 448 FFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKI-----------NADNNSVYNTPPTFVVHVIQRVFAW 515 (621)
Q Consensus 448 ~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~-----------~~~~~s~~nTP~~~~iy~~~~vl~~ 515 (621)
..|.+.+|++|-+ ||.| +.+.++++.++...+.++....... .....-...|||+..++-+...|++
T Consensus 223 gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~ 301 (406)
T TIGR01814 223 GVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDI 301 (406)
T ss_pred CCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHH
Confidence 4688889999987 4659 7777777665443332222110000 0011112469999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhcc----CCc--cccc--CCCC------Cc-ccHHHHHHHHHccCccccCCCCCC
Q psy8733 516 IKRQGGLAKMEQNSLQKSVLLYQEIDNS----DKF--YECP--VQAG------FP-LDELFLKEAKAHNMIQLKGHRLVG 580 (621)
Q Consensus 516 ~~~~gg~~~~~~~~~~ka~~lY~~id~~----~~~--~~~~--v~~~------~~-~~~~~~~~~~~~~i~~~~g~~~~~ 580 (621)
+++. |++.++++..+-++.+.+.+++. +++ +.+. .... .+ -...+.+.+.++||+... +..+
T Consensus 302 ~~~~-g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v~~--~~~~ 378 (406)
T TIGR01814 302 FDQA-GMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIGDK--REPS 378 (406)
T ss_pred HHhc-CHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEEec--cCCC
Confidence 9877 48999999999999999888663 122 2110 0010 01 124577888899998642 3336
Q ss_pred ccceeec-cCCCHHHHHHHHHHHHHH
Q psy8733 581 GIRASIY-NAITVDEAVILVKFMKEF 605 (621)
Q Consensus 581 ~~r~~~~-~a~~~~~~~~l~~~~~~~ 605 (621)
.||+|.- --.|.||++.|++.|++.
T Consensus 379 ~iRiS~~~~~nt~~did~l~~~l~~~ 404 (406)
T TIGR01814 379 VIRVAPVPLYNTFVDVYDAVNVLEEI 404 (406)
T ss_pred eEEEechhccCCHHHHHHHHHHHHHH
Confidence 8999974 467999999999999865
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.52 Score=50.10 Aligned_cols=132 Identities=12% Similarity=0.002 Sum_probs=82.0
Q ss_pred HHHhhcccccccCCc--EEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 451 VIIAGAQKNIGPAGI--TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 451 ~~~a~~qk~~GpaGl--~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
++..|.-|.+|++|+ +.+++++++++...... + ..+++.++-+++-..++ +.+-++.+.++
T Consensus 187 i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~-------------~-~~~~s~~~q~~~~~~l~---~~~~~~~~~~~ 249 (330)
T TIGR01140 187 VVLRSLTKFFGLAGLRLGFVVAHPALLARLREAL-------------G-PWTVNGPARAAGRAALA---DTAWQAATRAR 249 (330)
T ss_pred EEEEecchhhcCchhhhhheeCCHHHHHHHHhcC-------------C-CCCchHHHHHHHHHHHh---chHHHHHHHHH
Confidence 445677899997775 89999999887643211 1 12455666555544443 33334677889
Q ss_pred HHHHHHHHHHHHhccCCcccccCCC-----CCcccHHHHHHHHHccCccccCCCC----CCccceeeccCCCHHHHHHHH
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQA-----GFPLDELFLKEAKAHNMIQLKGHRL----VGGIRASIYNAITVDEAVILV 599 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~-----~~~~~~~~~~~~~~~~i~~~~g~~~----~~~~r~~~~~a~~~~~~~~l~ 599 (621)
.+++.+.+.+.+++.+.+-..+-.. ...-..+|.+.++++||....|... .+.||++...-. ++ +.|+
T Consensus 250 ~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~~~~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~--~~-~~~~ 326 (330)
T TIGR01140 250 LAAERARLAALLARLGGLEVVGGTALFLLVRTPDAAALHEALARRGILIRDFDNFPGLDPRYLRFALPTDE--EN-DRLE 326 (330)
T ss_pred HHHHHHHHHHHHHhCCCceECCCCCeEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecCHH--HH-HHHH
Confidence 9999999999998875321111000 0112356889999999997666532 356999875422 44 6555
Q ss_pred HHH
Q psy8733 600 KFM 602 (621)
Q Consensus 600 ~~~ 602 (621)
+-|
T Consensus 327 ~~l 329 (330)
T TIGR01140 327 EAL 329 (330)
T ss_pred Hhh
Confidence 543
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=91.12 E-value=29 Score=38.63 Aligned_cols=128 Identities=10% Similarity=0.113 Sum_probs=74.6
Q ss_pred CceEEEEecc-cccccccccc---------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccC--CC
Q psy8733 273 EASYLYYCDN-ETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIG--PA 333 (621)
Q Consensus 273 ~t~~V~~thn-ET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lG--P~ 333 (621)
+..+|.+-.. ....|+..+- +++++|+++|+|=++. +|-. .+-.+.+ |+++. -|.+| -.
T Consensus 207 ~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~--gK~l~gG~~ 284 (427)
T TIGR00508 207 EIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILCV--GKALTGGYM 284 (427)
T ss_pred cEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEEe--chhhhcCcc
Confidence 4455554443 3444565541 4568999999999973 3211 1111222 34544 58883 22
Q ss_pred ccEEEEEchhHHhhhCCCC-CceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPIT-PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~-P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
=++.+..++++.+.+.... +.+. ..+++.. |.....+..++|+.+.+. . +.++.+++.++|++.|.+
T Consensus 285 p~~a~~~~~~~~~~~~~~~~~~~~-------~~~T~~g-~p~~~aaa~a~l~~l~~~-~---~~~~~~~~~~~l~~~L~~ 352 (427)
T TIGR00508 285 TLSATVTTDKVAQTISSGEAGCFM-------HGPTFMG-NPLACAVAEASLAILLEG-E---WQKQVSAIENQLKRELSP 352 (427)
T ss_pred cceEEEEcHHHHHHHhcCCCCccc-------cCCCCCc-CHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHH
Confidence 2577888888876654211 1110 1233433 455667777789988765 3 357788888899998887
Q ss_pred cC
Q psy8733 413 SD 414 (621)
Q Consensus 413 ~~ 414 (621)
+.
T Consensus 353 l~ 354 (427)
T TIGR00508 353 LR 354 (427)
T ss_pred hh
Confidence 64
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=16 Score=40.59 Aligned_cols=129 Identities=10% Similarity=0.111 Sum_probs=74.6
Q ss_pred CCceEEEEecc-cccccccccc---------ccccCCCcEEEecccccCCCccc---ccccc----eEEecccccc-C--
Q psy8733 272 PEASYLYYCDN-ETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRKFD---VSKFG----VIIAGAQKNI-G-- 331 (621)
Q Consensus 272 ~~t~~V~~thn-ET~tGv~~p~---------i~~~~g~llvvDavSs~G~~pID---v~~~g----vl~asaqK~l-G-- 331 (621)
+++.+|.+-.. .-..|+..|- +++++|+++|+|=+++=..+.=. .+.+| +++. -|.+ |
T Consensus 199 ~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~--gK~l~gG~ 276 (422)
T PRK05630 199 ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCV--GKALTGGF 276 (422)
T ss_pred hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeee--echhhcCc
Confidence 34555554432 3335776552 45689999999999752222211 22333 4544 5888 3
Q ss_pred CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 332 P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+| +|.+..++++.+.+...... ......++|. -|.....+..++|+.+.++ + ..++.+++.++|++.|.
T Consensus 277 ~p-~~av~~~~~i~~~~~~~~~~-----~~~~h~~T~~-g~Pla~aaa~aaL~~l~~~-~---~~~~~~~~g~~l~~~L~ 345 (422)
T PRK05630 277 MS-FAATLCTDKVAQLISTPNGG-----GALMHGPTFM-ANPLACAVAHASLEIIETG-M---WRKQVKRIEAELIAGLS 345 (422)
T ss_pred cc-cceeeccHHHHHHHhccCCC-----CccccCCCCc-CCHHHHHHHHHHHHHHHhC-c---HHHHHHHHHHHHHHHHH
Confidence 45 57777888887655321000 0011234554 4445666677789999875 3 34577777888888777
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
.+
T Consensus 346 ~l 347 (422)
T PRK05630 346 PL 347 (422)
T ss_pred Hh
Confidence 53
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.75 E-value=9.4 Score=42.89 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=71.2
Q ss_pred ccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEecccccc--CCCccEEEEEchhHHhh
Q psy8733 286 DGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNI--GPAGITVVIVREDLLEY 347 (621)
Q Consensus 286 tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~l--GP~Glg~livr~~ll~~ 347 (621)
.|++.|- +++++|+++|+|=+-+ ||- ..+-.+.+| +++.+ |.| |--=+|.+++++++.+.
T Consensus 228 gG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~a--KGLT~GY~Pl~a~l~~~~I~~~ 305 (449)
T COG0161 228 GGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLA--KGLTGGYLPLSAVLTSDRIYEA 305 (449)
T ss_pred CCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeec--ccccccchhhHhHhhhHHHHHH
Confidence 6777762 5678999999997644 331 223334443 55554 888 43337888899999876
Q ss_pred hCCC-CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 348 ALPI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 348 ~~~~-~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+... ...+ -++.+| |-+..+..+..+.|+.++++ .+.++.+++..+|.+.|.+
T Consensus 306 ~~~~~~~~f-------~HG~TY-sghPlacAaAla~L~i~e~e----~l~~~~~~~~~~l~~~L~~ 359 (449)
T COG0161 306 FSDGDAGAF-------MHGHTY-SGNPLACAAALANLDILEEE----DLLERVAEIGAYLQAGLQA 359 (449)
T ss_pred HhcccCCee-------ccCCcc-ccCHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHH
Confidence 5432 1111 123444 33334455556788988876 4556677888888888886
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.56 Score=50.59 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=110.0
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++.+|+||-+||.|++++.+|++.. ..|.+.. .. ........|||+.+|+-+...++++.+ +++.+++
T Consensus 188 ~~D~~~~s~~K~~gp~G~g~l~v~~~~~-----~~p~~~g-~~-~~~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~ 258 (379)
T TIGR03402 188 NIDMLSLSGHKLHGPKGVGALYIRKGTR-----FRPLLRG-GH-QERGRRAGTENVPGIVGLGKAAELATE--HLEEENT 258 (379)
T ss_pred CCCEEEEcHHHcCCCCceEEEEECCCCC-----CCCcccC-Cc-cCCCcCCCCccHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 4688889999977899999999998752 2233321 11 112234679999999999999999875 4788888
Q ss_pred HHHHHHHHHHHHHhc-cCCc--ccccCCC--C-------CcccHHHHHHHHHccCccccCCC------------------
Q psy8733 528 NSLQKSVLLYQEIDN-SDKF--YECPVQA--G-------FPLDELFLKEAKAHNMIQLKGHR------------------ 577 (621)
Q Consensus 528 ~~~~ka~~lY~~id~-~~~~--~~~~v~~--~-------~~~~~~~~~~~~~~~i~~~~g~~------------------ 577 (621)
+.++-.+.+.+.+.+ -+++ +..+-.. + ..-..+|.+.++++||....|+.
T Consensus 259 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~ 338 (379)
T TIGR03402 259 RVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVP 338 (379)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCC
Confidence 888888888888764 3321 1111001 0 01234588888899999776641
Q ss_pred ---CCCccceeeccCCCHHHHHHHHHHHHHHHHHcCC
Q psy8733 578 ---LVGGIRASIYNAITVDEAVILVKFMKEFRHKHSR 611 (621)
Q Consensus 578 ---~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~~ 611 (621)
..|.+|+|.-.-.|.||+++|++.|++..++...
T Consensus 339 ~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 339 HTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred hhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1367999999999999999999999998776543
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=2.9 Score=45.87 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=97.6
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
..|.+-+++-|-+| |-|.+++++|++.++...+. -+|-. .......-|+|.+++.-+...|+++... |.+++.
T Consensus 221 ~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~----~~yl~-~~d~t~~GSR~g~~~l~lw~aL~~lg~~-G~~~~~ 294 (380)
T PRK02769 221 GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVD----VDYIG-SRDQTISGSRNGHTALLLWAAIRSLGSK-GLRQRV 294 (380)
T ss_pred CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccC----ccccC-CCCCCccCCCCcHHHHHHHHHHHHHCHH-HHHHHH
Confidence 35778889999888 99999999999988764332 22322 2233567799999999999999998765 599999
Q ss_pred HHHHHHHHHHHHHHhccCCcccccCCCCC-----c-ccHHHHHHHHHccCccccCCCC---CCccceeeccCCCHHHHHH
Q psy8733 527 QNSLQKSVLLYQEIDNSDKFYECPVQAGF-----P-LDELFLKEAKAHNMIQLKGHRL---VGGIRASIYNAITVDEAVI 597 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~~~~~~~v~~~~-----~-~~~~~~~~~~~~~i~~~~g~~~---~~~~r~~~~~a~~~~~~~~ 597 (621)
++..+.++.+++.|++. ++ ....++.. + .+..+. +||.. .+.+|+.+-|-++.|.++.
T Consensus 295 ~~~~~la~~l~~~L~~~-g~-~~~~~p~~~~v~f~~~~~~~~-----------~~w~l~~~~~~~hi~~~~~~~~~~~~~ 361 (380)
T PRK02769 295 QHCLDMAQYAVDRLQAN-GI-PAWRNPNSITVVFPCPSERIW-----------KKWHLATSGNQAHIITMPHHNKQQIDS 361 (380)
T ss_pred HHHHHHHHHHHHHHHhC-CC-EEEcCCCceEEEEcCCCHHHH-----------hCeeEcccCCEEEEEECCCCCHHHHHH
Confidence 99999999999999774 32 22222211 1 111111 33322 3469999999999998876
Q ss_pred HHHHHHHHHH
Q psy8733 598 LVKFMKEFRH 607 (621)
Q Consensus 598 l~~~~~~~~~ 607 (621)
+++=|.....
T Consensus 362 f~~dl~~~~~ 371 (380)
T PRK02769 362 LIDELIFDLK 371 (380)
T ss_pred HHHHHHHHHh
Confidence 6655544433
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.57 E-value=4.2 Score=46.71 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=71.3
Q ss_pred CCCceEEEEecccccccccccc--cc---ccCCCcEEEecccccCC-----Cc-ccccc-cceEEeccccccC-CCccEE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--IP---DSQGIPLVSDMSSNFLS-----RK-FDVSK-FGVIIAGAQKNIG-PAGITV 337 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--i~---~~~g~llvvDavSs~G~-----~p-IDv~~-~gvl~asaqK~lG-P~Glg~ 337 (621)
.++..-..+..|.|-.|+..+. +. ...++++.+|-.-.+-- .| -+++. -++++-|.||.+| -+=.+.
T Consensus 163 ~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~alSQaS~ 242 (557)
T COG1982 163 HPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFVTQSTHKLLAALSQASM 242 (557)
T ss_pred ChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEEEechhhhhhhhhhhHH
Confidence 3444134555677889999885 32 24567777775432211 11 11111 1288999999995 554555
Q ss_pred EEEchh-HHhhhCCCCCceeeccccccCCC--ccCCchHHHHHHHHHHHHHHHhhCCHHHH---HHHHHHHHHHHHHHHH
Q psy8733 338 VIVRED-LLEYALPITPTVFHFKINADNNS--VYNTPPTFVVHVIQRVFAWIKRQGGLAKM---EQNSLQKSVLLYQEID 411 (621)
Q Consensus 338 livr~~-ll~~~~~~~P~~ld~~~~~~~~s--~~~TP~v~~I~aL~~aL~~i~~~gGl~~i---~~r~~~la~~L~e~L~ 411 (621)
+-+++. .++ .....+.-. .-.+|+...+++|.. .+...+..|...+ .+...++.+.+++.+.
T Consensus 243 iHv~~~~~~~-----------~~r~nea~~~h~STSPsY~l~ASlD~-Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~ 310 (557)
T COG1982 243 IHVKDGRAVN-----------HERFNEALMMHQSTSPSYPLMASLDV-ARMQEGNAGRELWQEVIDEAIDFRKALRRLIN 310 (557)
T ss_pred HhhCCCccCC-----------HHHHHHHHHHHccCCchHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555542 110 000000000 112454555555555 3333333354332 5666777788888888
Q ss_pred ccCCcccC
Q psy8733 412 NSDKFYEC 419 (621)
Q Consensus 412 ~~~g~~~~ 419 (621)
++++|+..
T Consensus 311 ~~~~~~~~ 318 (557)
T COG1982 311 EIGFFPVL 318 (557)
T ss_pred hcCCeeec
Confidence 88866654
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.79 Score=49.82 Aligned_cols=142 Identities=14% Similarity=0.161 Sum_probs=82.0
Q ss_pred HHHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 451 VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 451 ~~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
++..|..|.+|.+| ++.++.++++++... . .......++ +.+...++-..|+.-.....++.+.++
T Consensus 230 i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~----------~-~~~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~ 297 (391)
T PRK08361 230 ILANSFSKTFAMTGWRLGFVIAPEQVIKDMI----------K-LHAYIIGNV-ASFVQIAGIEALRSKESWKAVEEMRKE 297 (391)
T ss_pred EEEecCchhcCCcHhhhhhhccCHHHHHHHH----------H-HHhhhccCC-ChHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 45578899999889 888999988876531 1 111222333 344444433333211111247888899
Q ss_pred HHHHHHHHHHHHhccCC---------cccc-cCCCCCcccHHHHHHH-HHccCccccCC--CC--CCccceeeccCCCHH
Q psy8733 529 SLQKSVLLYQEIDNSDK---------FYEC-PVQAGFPLDELFLKEA-KAHNMIQLKGH--RL--VGGIRASIYNAITVD 593 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~---------~~~~-~v~~~~~~~~~~~~~~-~~~~i~~~~g~--~~--~~~~r~~~~~a~~~~ 593 (621)
.+++.+.+++.+.+.++ ||.. .+.+..--..+|.+.+ +++|+....|. +. .+.||++.= .+.+
T Consensus 298 ~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~ 375 (391)
T PRK08361 298 YNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA--TSKE 375 (391)
T ss_pred HHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec--CCHH
Confidence 99999999999987532 2221 1111001234566665 56899866654 33 345999853 4666
Q ss_pred HHHHHHHHHHHHH
Q psy8733 594 EAVILVKFMKEFR 606 (621)
Q Consensus 594 ~~~~l~~~~~~~~ 606 (621)
+++.-++-|+++.
T Consensus 376 ~l~~al~~l~~~l 388 (391)
T PRK08361 376 KLIEAMERMEKAL 388 (391)
T ss_pred HHHHHHHHHHHHH
Confidence 6555555555443
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.21 E-value=3.5 Score=46.48 Aligned_cols=130 Identities=15% Similarity=0.099 Sum_probs=79.0
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--ccccc-ccc----eEEeccccccC--C
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVS-KFG----VIIAGAQKNIG--P 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~-~~g----vl~asaqK~lG--P 332 (621)
++..+|.+-......|+..|- +++++|+++|+|=+++ +|-. .+=.+ .+| +++. -|.+| -
T Consensus 219 ~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~--gK~l~gG~ 296 (466)
T PRK07036 219 DNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITF--AKGLTSGY 296 (466)
T ss_pred CceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEE--ccccccCc
Confidence 345666655555555776662 4678999999999985 5431 22223 233 5555 48883 1
Q ss_pred CccEEEEEchhHHhhhCCC-CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AGITVVIVREDLLEYALPI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~-~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
-=+|.+..++++.+...+. .+.. ....+++++. +.....+..++|+.+.+. ++.++.+++.++|++.|.
T Consensus 297 ~Pi~av~~~~~i~~~~~~~~~~~~-----~~~~~~T~~g-npl~~aaa~a~Le~i~~~----~l~~~~~~~g~~l~~~L~ 366 (466)
T PRK07036 297 QPLGAVIISERLLDVISGPNAKGN-----VFTHGFTYSG-HPVACAAALKNIEIMERE----GLCEHVREVGPYFEERLA 366 (466)
T ss_pred cccEEEEEcHHHHHHHhcccCcCc-----ccccCCCCCC-CHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHH
Confidence 1178889999998765321 1110 0012345543 344567777889999765 356667777888888876
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
.+
T Consensus 367 ~l 368 (466)
T PRK07036 367 SL 368 (466)
T ss_pred Hh
Confidence 54
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.82 E-value=1.5 Score=48.70 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=75.4
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCCCc---ccccccc----eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLSRK---FDVSKFG----VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~~p---IDv~~~g----vl~asaqK~lGP~G- 334 (621)
+++.+|.+-..-..+|...| + +++++|+++|+|=+++ |.+- .-.+.++ ++.+ -|.+| .|
T Consensus 196 ~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~g~~~~~~~~~~~pDi~~~--gK~l~-~G~ 271 (426)
T PRK00062 196 DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRVALGGAQGYYGVTPDLTTL--GKIIG-GGL 271 (426)
T ss_pred CcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-ccccCCccHHHHhCCCcchHhh--hhHhh-CCC
Confidence 35667776666666788776 2 4568999999999986 2211 1011122 3333 48885 33
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.++.++++.+.+.+..+.+ ..++++ .+....++..++|+.+.+. ...++.+++.+++++.|.+
T Consensus 272 p~ga~~~~~~i~~~~~~~~~~~--------~~~T~~-~~p~~~aaa~a~L~~~~~~----~~~~~~~~~~~~~~~~l~~ 337 (426)
T PRK00062 272 PVGAFGGRREIMEQLAPLGPVY--------QAGTLS-GNPLAMAAGLATLKLLKEP----GFYEELEALTKRLAEGLKE 337 (426)
T ss_pred cceeeeEHHHHHHhhccCCCce--------ecccCc-CCHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHH
Confidence 678888998877653211111 112333 4455577778889988664 4556666677777777764
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=88.74 E-value=1.8 Score=46.11 Aligned_cols=126 Identities=21% Similarity=0.183 Sum_probs=76.8
Q ss_pred cccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy8733 458 KNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 535 (621)
Q Consensus 458 k~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~ 535 (621)
|.+|.+| ++.++.++++++...+ .. . +++.+.++.+.+-. ++.+.+-++.+.++.+++.+.
T Consensus 223 K~~g~~GlRiG~~~~~~~~~~~~~~----------~~---~-~~~~~~~~~~~a~~---~l~~~~~~~~~~~~~~~~r~~ 285 (361)
T PRK00950 223 KVFGLAGLRIGYGFVPEWLIDYYMR----------AK---T-PFSLTRLSQAAAIA---ALSDKEYIEKSIEHGIKSREY 285 (361)
T ss_pred HhhcCchhhcchhcCCHHHHHHHHH----------hc---C-CCCCCHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHH
Confidence 6788777 6777888888765321 11 1 12244555554443 343434466677777777888
Q ss_pred HHHHHh----ccCCcc-cccCCCCCcccHHHHHHHHHccCccccC--CCC--CCccceeeccCCCHHHHHHHHHHHHHH
Q psy8733 536 LYQEID----NSDKFY-ECPVQAGFPLDELFLKEAKAHNMIQLKG--HRL--VGGIRASIYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 536 lY~~id----~~~~~~-~~~v~~~~~~~~~~~~~~~~~~i~~~~g--~~~--~~~~r~~~~~a~~~~~~~~l~~~~~~~ 605 (621)
+++.+. .+.++| -..++ .....+|.+.+.++|+....| |+. .+.||++.= +.++.++|++-|++.
T Consensus 286 l~~~l~~~~~~~~~~~i~~~~~--~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~i 359 (361)
T PRK00950 286 LYNELPFKVYPSEANFVLVDVT--PMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEI 359 (361)
T ss_pred HHhhcCeeECCCcceEEEEECC--CCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHH
Confidence 888774 111222 22221 113466888889999886544 433 345999953 788999999988764
|
|
| >KOG2142|consensus | Back alignment and domain information |
|---|
Probab=88.22 E-value=0.54 Score=54.03 Aligned_cols=156 Identities=14% Similarity=0.052 Sum_probs=97.0
Q ss_pred CCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhC-CCCCceeecccc------ccCCCc
Q psy8733 298 GIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYAL-PITPTVFHFKIN------ADNNSV 367 (621)
Q Consensus 298 g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~-~~~P~~ld~~~~------~~~~s~ 367 (621)
+-..++|++|=.-+.|+|.+.+- +.-. -.|.+| |. |.|.+..+.-+..- .....++.|... .++...
T Consensus 194 ~~y~lldtaSrvSaf~Ldaesy~f~~~~~-lltiFgyet--gAvlv~~r~A~~~Ggkt~sa~f~wp~~~l~s~~lkkr~e 270 (728)
T KOG2142|consen 194 SEYVLLDTASRVSAFPLDAESYPFDFNPK-LLTIFGYET--GAVLVMNRSAELKGGKTASAEFSWPMLYLLSEKLKKRFE 270 (728)
T ss_pred ceEEEEEeecccccccchHhhCCCcccch-heeecCCCc--hhhHHHhhhhHhhcCccceeecccchHHHHHHHHHHHHh
Confidence 45678999998889999999864 5544 789999 77 44555544433221 111223333321 112233
Q ss_pred cCCchHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCch
Q psy8733 368 YNTPPTFVVHVIQRVFAWIKRQ-GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSA 446 (621)
Q Consensus 368 ~~TP~v~~I~aL~~aL~~i~~~-gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~ 446 (621)
.+|-+--.++++-.+++.+... ||+..+..+...++++.+..|++.. + .+.+.+.-+ .+.
T Consensus 271 ~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~~-l--G~kdmd~yg----------------lS~ 331 (728)
T KOG2142|consen 271 DGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDALA-L--GPKDMDSYG----------------LSL 331 (728)
T ss_pred hccccccchhhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhhhc-c--CcchHhhhh----------------hhc
Confidence 4566666677777777777765 8999999999999999999999854 2 332211110 011
Q ss_pred hhHHHHHhhcccccc---cCCcEEeeecHhHh
Q psy8733 447 FFFGVIIAGAQKNIG---PAGITVVIVREDLL 475 (621)
Q Consensus 447 ~~~~~~~a~~qk~~G---paGl~v~iv~~~~l 475 (621)
+.-|.+-.+.=.|+| |+|.+...|.|.++
T Consensus 332 f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~i 363 (728)
T KOG2142|consen 332 FQPDFQGPSFYFVFGRDDPSGFGCLEVKKSAI 363 (728)
T ss_pred cCccceeeeEEEEeccCCCCceeeeeeehhhh
Confidence 112333334445676 77888888888885
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=88.11 E-value=2.1 Score=46.39 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=80.6
Q ss_pred HHHHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 450 GVIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 450 ~~~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
+++..|..|.+|.+| ++.++.++++++.... ......++ ++...-+++...++.- +-=++.+.+
T Consensus 224 ~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~-----------~~~~~~~~-~~~~~q~~~~~~l~~~--~~~~~~~~~ 289 (387)
T PRK07777 224 TVTISSAAKTFNVTGWKIGWACGPAPLIAAVRA-----------AKQYLTYV-GGAPFQPAVAHALDHE--DAWVAALRD 289 (387)
T ss_pred EEEEeechhhccCcCceeEEEecCHHHHHHHHH-----------HHhhcccC-CCCHHHHHHHHHHhCC--cHHHHHHHH
Confidence 456678899999778 4778888888765321 11111122 2222233333333210 112345677
Q ss_pred HHHHHHHHHHHHHhccC--------Ccccc-cCCC-CCcccHHHHHHH-HHccCccccCC--CC-----CCccceeeccC
Q psy8733 528 NSLQKSVLLYQEIDNSD--------KFYEC-PVQA-GFPLDELFLKEA-KAHNMIQLKGH--RL-----VGGIRASIYNA 589 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~--------~~~~~-~v~~-~~~~~~~~~~~~-~~~~i~~~~g~--~~-----~~~~r~~~~~a 589 (621)
..+++.+.+++.+++.. +||.. .+.+ ......+|.+.+ +++|+....|. +. .+.||++. +
T Consensus 290 ~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~--~ 367 (387)
T PRK07777 290 SLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAF--C 367 (387)
T ss_pred HHHHHHHHHHHHHHhCCCCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEe--c
Confidence 88899999999997642 33332 1111 111235677777 57899865553 32 34699986 3
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy8733 590 ITVDEAVILVKFMKEFR 606 (621)
Q Consensus 590 ~~~~~~~~l~~~~~~~~ 606 (621)
.+.|+++.-++.|++++
T Consensus 368 ~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 368 KRDDTLDEAIRRLRALR 384 (387)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 47777777777776654
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=15 Score=45.48 Aligned_cols=123 Identities=14% Similarity=0.181 Sum_probs=74.7
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC---cccccccc----eEEeccccccC--CC
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR---KFDVSKFG----VIIAGAQKNIG--PA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~---pIDv~~~g----vl~asaqK~lG--P~ 333 (621)
++.+|.+=..-...|++.+- +++++|+++|+|=+|+ +|-. -.-.+.+| +++. -|.+| -|
T Consensus 784 ~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~--gK~lggG~P 861 (1013)
T PRK06148 784 GPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTM--GKPIGNGHP 861 (1013)
T ss_pred ceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeee--cccccCCcc
Confidence 34444433333334565551 4568999999999985 5421 12223333 5555 48884 22
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+...+ . ....++|+-.|+. ..+..++|+.+.++ ++.++.+++.++|+++|+++
T Consensus 862 -lgav~~~~ei~~~~~~---g-------~~~~~Tf~gnpla-~aaa~a~L~~i~~e----~l~~~~~~~G~~l~~~L~~l 925 (1013)
T PRK06148 862 -MGAVVTTREIADSFDN---G-------MEYFNTFGGNPVS-CAIGLAVLDIIEDE----DLQRNALEIGNYLLAGLREL 925 (1013)
T ss_pred -eEEEEEcHHHHhhccC---C-------CccccCCCCCHHH-HHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHH
Confidence 8899999998765432 1 0113566544444 55556779999876 35566677778888888764
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=4.4 Score=45.29 Aligned_cols=123 Identities=10% Similarity=0.065 Sum_probs=70.1
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCCC---cccccccc----eEEeccccccC--CCc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSR---KFDVSKFG----VIIAGAQKNIG--PAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~---pIDv~~~g----vl~asaqK~lG--P~G 334 (621)
+..+|.+-..-...|...|. +++++|+++|+|=+++ |.+ ..-.+.+| +++. -|.+| -|
T Consensus 201 ~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~gv~PDi~~~--gK~lggG~p- 276 (433)
T PRK00615 201 RVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYHVKPDITVY--GKILGGGLP- 276 (433)
T ss_pred ceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcCCCCCeEEE--cccccCCcc-
Confidence 44555544444445666652 4568999999999984 321 11112232 5554 58884 23
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.+..++++.+.+.+..+.+ ..+++. .|.....+..++|+.+.++ + +.++.+++.+++.+.|++
T Consensus 277 ~~av~~~~~i~~~~~~~~~~~--------~~~T~~-g~p~~~aa~la~L~~i~~~-~---~~~~~~~~g~~l~~~l~~ 341 (433)
T PRK00615 277 AAAVVAHKSIMDHLAPEGTIF--------QAGTLS-GNPLAMAAGKASINLCREQ-G---FYTQLSTLEQNFLSPIEE 341 (433)
T ss_pred eeeeeecHHHHhhhcCCCCcc--------cCCCCc-ccHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHH
Confidence 778888999877653211100 123443 2334577778889988765 3 355555666666555554
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=87.16 E-value=1.4 Score=53.03 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=110.5
Q ss_pred hhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCc--eeeeee-------ccc---CCCccCCCchhHHHHHHHHH
Q psy8733 447 FFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPT--VFHFKI-------NAD---NNSVYNTPPTFVVHVIQRVF 513 (621)
Q Consensus 447 ~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~--~~~y~~-------~~~---~~s~~nTP~~~~iy~~~~vl 513 (621)
...|.+.+|+-|=+| |.|+++.++|++++++-.+.... ...+.. ... ..=-.-|||+.+|.-+...|
T Consensus 251 ~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal 330 (805)
T PLN02724 251 YPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGF 330 (805)
T ss_pred cCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHH
Confidence 347889999999999 99999999999998653332110 111110 000 00012499999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHhccCC--------ccccc------CCC---------C---CcccHH-HHHHHH
Q psy8733 514 AWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK--------FYECP------VQA---------G---FPLDEL-FLKEAK 566 (621)
Q Consensus 514 ~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~--------~~~~~------v~~---------~---~~~~~~-~~~~~~ 566 (621)
+|+.+.| .+.++++..+=++.+++.|.+.+. +|-+. -.. + ..+... +.+.+.
T Consensus 331 ~~l~~ig-~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~ 409 (805)
T PLN02724 331 KLLNRLT-ISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLAS 409 (805)
T ss_pred HHHHHhC-hHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHH
Confidence 9998775 899999999999999999886541 45332 011 0 112222 445567
Q ss_pred HccCccccCCC-------------------------------------CCCccceeeccCCCHHHHHHHHHHHHHHH
Q psy8733 567 AHNMIQLKGHR-------------------------------------LVGGIRASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 567 ~~~i~~~~g~~-------------------------------------~~~~~r~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
++||..-.|+= ..|.+|+|.....|.||+++|+++|+++.
T Consensus 410 ~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 410 LSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred hcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 77888644431 13779999999999999999999999955
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.2 Score=50.28 Aligned_cols=157 Identities=10% Similarity=0.140 Sum_probs=107.4
Q ss_pred hHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCceeeeeecccC---CCccCCCchhHHHHHHHHHHHHHhcCChH
Q psy8733 448 FFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKINADN---NSVYNTPPTFVVHVIQRVFAWIKRQGGLA 523 (621)
Q Consensus 448 ~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~---~s~~nTP~~~~iy~~~~vl~~~~~~gg~~ 523 (621)
..|++.++.+|.| ||.| +++.+++.+++...+..+...+|....+. ...-.+||...|+.+.-.|+++.+.| .+
T Consensus 236 ~~Div~~t~hK~L~GP~G-g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~-~~ 313 (475)
T PLN03226 236 YCDVVTTTTHKSLRGPRG-GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPE-FK 313 (475)
T ss_pred CCeEEEecCcccccCCCc-eEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcC-HH
Confidence 3689999999999 8999 88888988764422222222233211111 11224688999999999999998765 67
Q ss_pred HHHHHHHHHHHHHHHHHhccCCc--ccccCCC--------CCc-ccHHHHHHHHHccCccccCC----CC---CCccce-
Q psy8733 524 KMEQNSLQKSVLLYQEIDNSDKF--YECPVQA--------GFP-LDELFLKEAKAHNMIQLKGH----RL---VGGIRA- 584 (621)
Q Consensus 524 ~~~~~~~~ka~~lY~~id~~~~~--~~~~v~~--------~~~-~~~~~~~~~~~~~i~~~~g~----~~---~~~~r~- 584 (621)
...++..+-++.|.+.+.+ .|| +...-+. ... ...++.+.+++.||+.-++. .+ -++||+
T Consensus 314 ~~~~~~~~na~~L~~~L~~-~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiG 392 (475)
T PLN03226 314 AYQKQVKANAAALANRLMS-KGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIG 392 (475)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccC
Confidence 8899999999999999877 332 1110000 001 22457788889999987764 22 456777
Q ss_pred ---eeccCCCHHHHHHHHHHHHHHHH
Q psy8733 585 ---SIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 585 ---~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
-.-=.++.+|++.++++|.+.-.
T Consensus 393 t~~lt~~g~~~~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 393 TPAMTSRGLVEKDFEKVAEFLHRAVT 418 (475)
T ss_pred cHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 35567889999999999988776
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.91 E-value=30 Score=38.92 Aligned_cols=120 Identities=15% Similarity=0.262 Sum_probs=70.0
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCCcc---cccccc----eEEecccccc--CCC
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSRKF---DVSKFG----VIIAGAQKNI--GPA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~pI---Dv~~~g----vl~asaqK~l--GP~ 333 (621)
+..+|.+=......|+..|- +++++|+++|+|=+|+ +| +.= -.+.+| +++.| |.+ |-|
T Consensus 225 ~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfG-RtG~~~a~~~~gv~PDivt~g--K~l~gG~P 301 (459)
T PRK06931 225 KPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFA-RTGKMFAFEHAGIEPDIIVMS--KAVGGGLP 301 (459)
T ss_pred ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCC-cCchHHHhhhcCCCCCEEEec--ccccCCcc
Confidence 34555543333444665542 4568999999999987 53 211 122333 56654 888 322
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++ +... +. ...++|+ .|..+..+..++|+.+.+. + +.++.+++.++|++.|+++
T Consensus 302 -i~av~~~~~~-~~~~---~~--------~~~~T~~-gnpla~aaala~L~~l~~~-~---l~~~~~~~G~~l~~~L~~l 363 (459)
T PRK06931 302 -LAVLGIKKEF-DAWQ---PG--------GHTGTFR-GNQLAMATGLTTLKILKEE-N---LAQNAAERGEWLKAQLAEL 363 (459)
T ss_pred -eeeeeeHHHH-hhcc---CC--------CCCCCCC-CCHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHH
Confidence 5667777664 3221 11 1235554 3344567777889988776 3 4556666777777777654
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.34 E-value=16 Score=44.65 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=75.9
Q ss_pred CCCceEEEEecccccccccccc--c---cccCCCcEEE--ecccccCCCcccccccc--eEEecccc-----ccCCCccE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--I---PDSQGIPLVS--DMSSNFLSRKFDVSKFG--VIIAGAQK-----NIGPAGIT 336 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--i---~~~~g~llvv--DavSs~G~~pIDv~~~g--vl~asaqK-----~lGP~Glg 336 (621)
+.++..|. ..+-+..|.+.|+ + +++.|+++++ |-.+-.+-. .-.+|| ++++++|- ++|-|+.|
T Consensus 206 ~~~~~~v~-vq~P~~~G~i~d~~~i~~~~h~~gal~~~~~d~laL~ll~--~Pge~GADI~vG~~Q~fGvp~~~GGP~ag 282 (954)
T PRK12566 206 AHAVFGAL-LQYPDTHGEIRDLRPLIDQLHGQQALACVAADLLSLLVLT--PPGELGADVVLGSTQRFGVPMGYGGPHAA 282 (954)
T ss_pred CCCEEEEE-EECCCCceEEccHHHHHHHHHHcCCEEEEEeCHHHHhCCC--ChhhcCCcEEeeCCCcCCCCCCCCCCCee
Confidence 34544444 4455667988774 3 3567877553 322211111 124566 77776663 44567799
Q ss_pred EEEEchhHHhhhCCCC----------Cce-eeccccccC-CCccCCchHHH---HHHHHHHH--HHHHhhCCHHHHHHHH
Q psy8733 337 VVIVREDLLEYALPIT----------PTV-FHFKINADN-NSVYNTPPTFV---VHVIQRVF--AWIKRQGGLAKMEQNS 399 (621)
Q Consensus 337 ~livr~~ll~~~~~~~----------P~~-ld~~~~~~~-~s~~~TP~v~~---I~aL~~aL--~~i~~~gGl~~i~~r~ 399 (621)
++.+++++..++.-.. +.| +-+.....+ ++.--|.|+=. +.++.+++ -|.-.+ |+.++.++.
T Consensus 283 ~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~-Gl~~ia~~~ 361 (954)
T PRK12566 283 YFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPE-GLKRIAQRV 361 (954)
T ss_pred eeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChH-HHHHHHHHH
Confidence 9999998876553211 111 111110000 01112444322 22222222 233334 899999999
Q ss_pred HHHHHHHHHHHHccCCcc
Q psy8733 400 LQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 400 ~~la~~L~e~L~~~~g~~ 417 (621)
..++.+|.+.|.+. |+.
T Consensus 362 ~~~a~~l~~~l~~~-g~~ 378 (954)
T PRK12566 362 HRLTAILAAGLEAK-GIK 378 (954)
T ss_pred HHHHHHHHHHHHhc-CCc
Confidence 99999999999884 443
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.25 E-value=46 Score=37.21 Aligned_cols=140 Identities=12% Similarity=0.112 Sum_probs=76.5
Q ss_pred CceEEEEeccccccc-ccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccc-----cCCCccEEEE
Q psy8733 273 EASYLYYCDNETVDG-VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKN-----IGPAGITVVI 339 (621)
Q Consensus 273 ~t~~V~~thnET~tG-v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~-----lGP~Glg~li 339 (621)
++..|.+.. -+..| ...++ ..+.+|++++|=+=--..+.-=.--+|| ++++++|-. +|-|..|++.
T Consensus 210 ~~~gv~vQy-P~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA 288 (450)
T COG0403 210 DVFGVLVQY-PNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFA 288 (450)
T ss_pred CeEEEEEec-CCCCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcceeeee
Confidence 455555444 45667 44444 2357787766532111111111224566 999999974 3556689999
Q ss_pred EchhHHhhhCCCC----------Cce-eeccccccC-CCccCCchHH-----HHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q psy8733 340 VREDLLEYALPIT----------PTV-FHFKINADN-NSVYNTPPTF-----VVHVIQRVFAWIKRQGGLAKMEQNSLQK 402 (621)
Q Consensus 340 vr~~ll~~~~~~~----------P~~-ld~~~~~~~-~s~~~TP~v~-----~I~aL~~aL~~i~~~gGl~~i~~r~~~l 402 (621)
++++...+++-.. |.| +-+++...+ ++.--|.|+= ...+....+-|+-.+ |+.++..|+.++
T Consensus 289 ~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~-GLk~iA~r~~~~ 367 (450)
T COG0403 289 VKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQ-GLKEIAERIHRL 367 (450)
T ss_pred EhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHH
Confidence 9999965543211 111 111110000 0001244432 222222333455556 899999999999
Q ss_pred HHHHHHHHHccC
Q psy8733 403 SVLLYQEIDNSD 414 (621)
Q Consensus 403 a~~L~e~L~~~~ 414 (621)
+.++.++|++.+
T Consensus 368 a~~la~~L~~~~ 379 (450)
T COG0403 368 AAYLAAGLKEIG 379 (450)
T ss_pred HHHHHHHHhhcC
Confidence 999999999764
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=85.12 E-value=16 Score=40.36 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=87.8
Q ss_pred ccccccC-CcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy8733 457 QKNIGPA-GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 535 (621)
Q Consensus 457 qk~~Gpa-Gl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~ 535 (621)
=|.+||. -++.++.++++++.... ....+++.+ |.++..++..+|+.+....=++.+.+..++..+.
T Consensus 267 sK~l~~G~rig~v~~~~~~~~~~~~-----------~~~~~t~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 334 (425)
T PRK08088 267 AKSIAGGFPLAGVTGRAEVMDAIAP-----------GGLGGTYAG-NPIACAAALAVLKVFEQENLLQKANALGEKLKDG 334 (425)
T ss_pred eccccCCCcceeeEecHHHHhhcCC-----------CCCCCCCCc-CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3555542 26778888888765321 234456664 5567888889999887666666666666666666
Q ss_pred HHHHHhccCCc--------ccc-cC-CC------CCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHH
Q psy8733 536 LYQEIDNSDKF--------YEC-PV-QA------GFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILV 599 (621)
Q Consensus 536 lY~~id~~~~~--------~~~-~v-~~------~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~ 599 (621)
+-+..+.++.+ +-. .. ++ +......|.+.+.++|++...+....+.||++.=..++.+|++..+
T Consensus 335 l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i 414 (425)
T PRK08088 335 LLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGL 414 (425)
T ss_pred HHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHH
Confidence 66655555421 100 11 11 1113566889999999875443333467898653368999999999
Q ss_pred HHHHHHHH
Q psy8733 600 KFMKEFRH 607 (621)
Q Consensus 600 ~~~~~~~~ 607 (621)
+.|++..+
T Consensus 415 ~~l~~~l~ 422 (425)
T PRK08088 415 EIIAQCFD 422 (425)
T ss_pred HHHHHHHH
Confidence 88877654
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.93 E-value=4.7 Score=43.60 Aligned_cols=131 Identities=12% Similarity=0.054 Sum_probs=73.2
Q ss_pred hhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8733 454 AGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 531 (621)
Q Consensus 454 a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ 531 (621)
.|-=|.+|++| ++.++.++++++...+ ++. .+..+++.+..+.+-..|+.. ..-++.+.++.++
T Consensus 235 ~S~SK~~g~~GlRiG~~i~~~~l~~~~~~-------~~~-----~~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~ 300 (385)
T PRK09276 235 HSLSKTYNMTGWRIGFAVGNADLIAGLGK-------VKS-----NVDSGVFQAIQEAGIAALNGP--QEVVEELRKIYQE 300 (385)
T ss_pred ecchhhcCCcchhheeeeCCHHHHHHHHH-------HHh-----hccCCCCHHHHHHHHHHHcCc--HHHHHHHHHHHHH
Confidence 44448999999 8888999888876321 111 111233344444443333210 1235667777888
Q ss_pred HHHHHHHHHhccC--------CcccccCCCCCcccHHHHHHH-HHccCccccCCC--C--CCccceeeccCCCHHHHHHH
Q psy8733 532 KSVLLYQEIDNSD--------KFYECPVQAGFPLDELFLKEA-KAHNMIQLKGHR--L--VGGIRASIYNAITVDEAVIL 598 (621)
Q Consensus 532 ka~~lY~~id~~~--------~~~~~~v~~~~~~~~~~~~~~-~~~~i~~~~g~~--~--~~~~r~~~~~a~~~~~~~~l 598 (621)
+.+.+++.+++.. +||...--+..-...+|.+.+ +++|+....|.. . .+.+|++. +.+.|++++.
T Consensus 301 ~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~ 378 (385)
T PRK09276 301 RRDILVEGLRKLGLEVEPPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIAL--TVPDERIEEA 378 (385)
T ss_pred HHHHHHHHHHhCCCcccCCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEe--CCCHHHHHHH
Confidence 8899999997641 232221101111234576665 468998777643 2 35699986 4566544444
Q ss_pred HH
Q psy8733 599 VK 600 (621)
Q Consensus 599 ~~ 600 (621)
++
T Consensus 379 l~ 380 (385)
T PRK09276 379 VE 380 (385)
T ss_pred HH
Confidence 43
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=84.85 E-value=5 Score=44.65 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=64.2
Q ss_pred cccccccccc--------ccccCCCcEEEecccccCCCccc--ccc-cc----eEEeccccccC--CCccEEEEEchhHH
Q psy8733 283 ETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKFD--VSK-FG----VIIAGAQKNIG--PAGITVVIVREDLL 345 (621)
Q Consensus 283 ET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pID--v~~-~g----vl~asaqK~lG--P~Glg~livr~~ll 345 (621)
|.+.|..-|. +++++|+++|+|=+++ |...-- .++ +| +++. =|.+| -| +|.+..++++.
T Consensus 194 Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~t-G~~~~~~g~~~~~gv~PDi~t~--gK~lggG~p-~~av~~~~~i~ 269 (431)
T PRK06209 194 EPATADEPQDGFLHEVRRLCHENGALFILDEMIT-GFRWHMRGAQKLYGIVPDLSCF--GKALGNGFA-VSALAGKREYM 269 (431)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-cCCcCcchhhHHhCCCcceeee--hhhhcCCcc-cEEEEEHHHHH
Confidence 7888873331 4568999999999873 322110 111 22 3333 47774 23 56777788876
Q ss_pred hhhC--CC-CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 346 EYAL--PI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 346 ~~~~--~~-~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+... .. .+..+ ..+...+||...+.+..++|+.+.++ + +.++..++.+++++.|++
T Consensus 270 ~~~~~~~~~~~~~~-------~~~~T~~~np~~~aaa~a~l~~i~~~-~---~~~~~~~~g~~l~~~L~~ 328 (431)
T PRK06209 270 ELGGLEHTDRERVF-------LLSTTHGAETHALAAAIATMAIYRDE-D---VIERLHEQGAKLAAGVNE 328 (431)
T ss_pred hhhcccccCCCCce-------eeccCCCCCHHHHHHHHHHHHHHhcc-C---HHHHHHHHHHHHHHHHHH
Confidence 5311 00 00000 01223467777888899999999876 4 233444445555555544
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=84.06 E-value=2 Score=46.98 Aligned_cols=160 Identities=17% Similarity=0.098 Sum_probs=103.8
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
..|++.+|.+|.+||.|+++++++++.+.+ ..|....+.. . ..-...||++..+.-++.-++.++. +++.+.+
T Consensus 196 ~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~---~~~~~~g~~~-~-~~~~~gt~~~~~~~~l~~al~~~~~--~~~~~~~ 268 (404)
T PRK14012 196 KVDLMSFSAHKIYGPKGIGALYVRRKPRVR---LEAQMHGGGH-E-RGMRSGTLPTHQIVGMGEAARIAKE--EMATENE 268 (404)
T ss_pred CCCEEEEehhhccCCCceEEEEEecCCCCC---CCceecCCCc-c-CCccCCCcCHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 367788899999999999999999987543 2332221110 1 1122468999999989888888764 4677888
Q ss_pred HHHHHHHHHHHHHhccCCccc--ccCCCCC-------c-cc-HHHHHHHHHccCccccCCC-------------------
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYE--CPVQAGF-------P-LD-ELFLKEAKAHNMIQLKGHR------------------- 577 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~--~~v~~~~-------~-~~-~~~~~~~~~~~i~~~~g~~------------------- 577 (621)
+.++-++.+++.|.+.++... .+.+... . .+ ..+.+.+++.++-.+.-|.
T Consensus 269 ~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (404)
T PRK14012 269 RIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDEL 348 (404)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCHHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhh
Confidence 888888999998876443210 0000000 0 11 2344444433332221111
Q ss_pred CCCccceeeccCCCHHHHHHHHHHHHHHHHHcCCCCc
Q psy8733 578 LVGGIRASIYNAITVDEAVILVKFMKEFRHKHSRLSA 614 (621)
Q Consensus 578 ~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~ 614 (621)
..+.||++..+-+|.+|++.+++.|+++.++..++++
T Consensus 349 ~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~~~~ 385 (404)
T PRK14012 349 AHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRELSP 385 (404)
T ss_pred cCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1367999999999999999999999998877655543
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.51 E-value=9.5 Score=42.73 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=65.9
Q ss_pred ccccCCCcEEEecccc-cCCCcccc---ccc----ceEEeccccccC--CCccEEEEEchhHHhhhCCCCCceeeccccc
Q psy8733 293 IPDSQGIPLVSDMSSN-FLSRKFDV---SKF----GVIIAGAQKNIG--PAGITVVIVREDLLEYALPITPTVFHFKINA 362 (621)
Q Consensus 293 i~~~~g~llvvDavSs-~G~~pIDv---~~~----gvl~asaqK~lG--P~Glg~livr~~ll~~~~~~~P~~ld~~~~~ 362 (621)
+++++|+++|+|=+|+ +| +.=.+ +.+ |+++. =|.+| -.=+|.++.++++.+.+.+. +.. .
T Consensus 229 lc~~~gillI~DEV~tGfG-RtG~~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~~~~i~~~~~~~-~~~------~ 298 (443)
T PRK07483 229 VCDRYGVLLILDEVMCGMG-RTGTLFACEEDGVAPDLVTI--AKGLGAGYQPIGAVLASDRIYDAIADG-SGF------F 298 (443)
T ss_pred HHHHhCCEEEEecceeCcc-cCcHHHHHhhcCCCCCeeee--hhhhccCccccEEEEEcHHHHHHHhcC-CCc------c
Confidence 4578999999999987 43 32211 223 35555 48883 21289999999987655321 100 1
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
...++++--| .+..+..++|+.+.+. ++.++.+++.++|++.|+++
T Consensus 299 ~h~~T~~gnp-l~~aaa~a~l~~i~~~----~l~~~~~~~g~~l~~~L~~l 344 (443)
T PRK07483 299 QHGHTYLGHA-TACAAALAVQRVIAED----GLLANVRARGEQLRARLRER 344 (443)
T ss_pred ccCCCCCCCH-HHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 1235554333 4466777889999876 35566677778888877653
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.95 E-value=86 Score=33.79 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=65.8
Q ss_pred CCCCccccCCCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCcccccc----cc---eEEec
Q psy8733 261 SIPDQSTWNRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKFDVSK----FG---VIIAG 325 (621)
Q Consensus 261 ~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pIDv~~----~g---vl~as 325 (621)
.-+|.+.+.+..++.+|+++--.|.||.+.-. +++.+|+++++|-+-++.---|.+++ |+ ++++|
T Consensus 167 Y~vDF~~l~i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~S 246 (417)
T COG3977 167 YHVDFEHLHIGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMS 246 (417)
T ss_pred eccCHHHcccccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEee
Confidence 34566777888899999999999999986542 45689999999987766555555554 44 66666
Q ss_pred cccccCCCc--cEEEEEchhHHhhhC
Q psy8733 326 AQKNIGPAG--ITVVIVREDLLEYAL 349 (621)
Q Consensus 326 aqK~lGP~G--lg~livr~~ll~~~~ 349 (621)
--| +|-|| .|+++..++++..+.
T Consensus 247 LSK-~GLPG~R~GIiIane~viqait 271 (417)
T COG3977 247 LSK-LGLPGSRCGIIIANEKVIQAIT 271 (417)
T ss_pred hhh-cCCCCcceeEEEccHHHHHHHH
Confidence 666 57555 799999999987664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 621 | ||||
| 3e77_A | 377 | Human Phosphoserine Aminotransferase In Complex Wit | 3e-82 | ||
| 3e77_A | 377 | Human Phosphoserine Aminotransferase In Complex Wit | 4e-42 | ||
| 1bjo_A | 360 | The Structure Of Phosphoserine Aminotransferase Fro | 5e-61 | ||
| 1bjo_A | 360 | The Structure Of Phosphoserine Aminotransferase Fro | 2e-38 | ||
| 3qm2_A | 386 | 2.25 Angstrom Crystal Structure Of Phosphoserine Am | 1e-60 | ||
| 3qm2_A | 386 | 2.25 Angstrom Crystal Structure Of Phosphoserine Am | 7e-38 | ||
| 3qbo_A | 364 | Crystal Structure Of Phosphoserine Aminotransferase | 1e-60 | ||
| 3qbo_A | 364 | Crystal Structure Of Phosphoserine Aminotransferase | 5e-40 | ||
| 1bjn_A | 360 | Structure Of Phosphoserine Aminotransferase From Es | 2e-60 | ||
| 1bjn_A | 360 | Structure Of Phosphoserine Aminotransferase From Es | 8e-38 | ||
| 1bt4_A | 362 | Phosphoserine Aminotransferase From Bacillus Circul | 5e-60 | ||
| 1bt4_A | 362 | Phosphoserine Aminotransferase From Bacillus Circul | 7e-35 | ||
| 2bie_A | 361 | Radiation Damage Of The Schiff Base In Phosphoserin | 2e-56 | ||
| 2bie_A | 361 | Radiation Damage Of The Schiff Base In Phosphoserin | 2e-32 | ||
| 1w23_A | 360 | Crystal Structure Of Phosphoserine Aminotransferase | 2e-56 | ||
| 1w23_A | 360 | Crystal Structure Of Phosphoserine Aminotransferase | 2e-32 | ||
| 3m5u_A | 361 | Crystal Structure Of Phosphoserine Aminotransferase | 9e-38 | ||
| 3m5u_A | 361 | Crystal Structure Of Phosphoserine Aminotransferase | 1e-28 | ||
| 2fyf_A | 398 | Structure Of A Putative Phosphoserine Aminotransfer | 7e-05 | ||
| 2dr1_A | 386 | Crystal Structure Of The Ph1308 Protein From Pyroco | 8e-04 |
| >pdb|3E77|A Chain A, Human Phosphoserine Aminotransferase In Complex With Plp Length = 377 | Back alignment and structure |
|
| >pdb|3E77|A Chain A, Human Phosphoserine Aminotransferase In Complex With Plp Length = 377 | Back alignment and structure |
|
| >pdb|1BJO|A Chain A, The Structure Of Phosphoserine Aminotransferase From E. Coli In Complex With Alpha-Methyl-L-Glutamate Length = 360 | Back alignment and structure |
|
| >pdb|1BJO|A Chain A, The Structure Of Phosphoserine Aminotransferase From E. Coli In Complex With Alpha-Methyl-L-Glutamate Length = 360 | Back alignment and structure |
|
| >pdb|3QM2|A Chain A, 2.25 Angstrom Crystal Structure Of Phosphoserine Aminotransferase (Serc) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Length = 386 | Back alignment and structure |
|
| >pdb|3QM2|A Chain A, 2.25 Angstrom Crystal Structure Of Phosphoserine Aminotransferase (Serc) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Length = 386 | Back alignment and structure |
|
| >pdb|3QBO|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From Yersinia Pestis Co92 Length = 364 | Back alignment and structure |
|
| >pdb|3QBO|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From Yersinia Pestis Co92 Length = 364 | Back alignment and structure |
|
| >pdb|1BJN|A Chain A, Structure Of Phosphoserine Aminotransferase From Escherichia Coli Length = 360 | Back alignment and structure |
|
| >pdb|1BJN|A Chain A, Structure Of Phosphoserine Aminotransferase From Escherichia Coli Length = 360 | Back alignment and structure |
|
| >pdb|1BT4|A Chain A, Phosphoserine Aminotransferase From Bacillus Circulans Subsp. Alkalophilus Length = 362 | Back alignment and structure |
|
| >pdb|1BT4|A Chain A, Phosphoserine Aminotransferase From Bacillus Circulans Subsp. Alkalophilus Length = 362 | Back alignment and structure |
|
| >pdb|2BIE|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine Aminotransferase (Structure H) Length = 361 | Back alignment and structure |
|
| >pdb|2BIE|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine Aminotransferase (Structure H) Length = 361 | Back alignment and structure |
|
| >pdb|1W23|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From Bacillus Alcalophilus Length = 360 | Back alignment and structure |
|
| >pdb|1W23|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From Bacillus Alcalophilus Length = 360 | Back alignment and structure |
|
| >pdb|3M5U|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From Campylobacter Jejuni Length = 361 | Back alignment and structure |
|
| >pdb|3M5U|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From Campylobacter Jejuni Length = 361 | Back alignment and structure |
|
| >pdb|2FYF|A Chain A, Structure Of A Putative Phosphoserine Aminotransferase From Mycobacterium Tuberculosis Length = 398 | Back alignment and structure |
|
| >pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus Horikoshii Ot3 Length = 386 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 621 | |||
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 1e-164 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 1e-80 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 1e-164 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 2e-81 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 1e-161 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 4e-80 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 1e-158 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 1e-81 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 1e-156 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 4e-80 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 1e-111 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 2e-52 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 1e-107 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 4e-49 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 8e-11 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 8e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 7e-05 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 2e-04 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 4e-04 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 4e-04 |
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* Length = 360 | Back alignment and structure |
|---|
Score = 472 bits (1218), Expect = e-164
Identities = 129/386 (33%), Positives = 196/386 (50%), Gaps = 86/386 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
V NF AGP+ LP+ LE ++ LL++ T +SVME+SHRS Y +++ Q LREL
Sbjct: 4 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLREL--- 60
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
+ +PN+Y+ILFLQGG + F + MNL+ +
Sbjct: 61 ----------------------------LQIPNDYQILFLQGGASLQFTMLPMNLLTKGT 92
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
+YV+TGSWS+KA EA+ G+ ++
Sbjct: 93 IGNYVLTGSWSEKALKEAKLLGETHIA--------------------------------- 119
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
S KA + Y SIPD S + + +YL+ N T+ G ++
Sbjct: 120 ---ASTKA-----------------NSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ 159
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
P+ PL++DMSS+ LSR V++FG+I AGAQKN+GP+G+TVVIV++DLL +
Sbjct: 160 NFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQ 219
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
PT+ + + ++S+YNTPPTF +++++ V WIK GG + + + +K+ ++Y ID
Sbjct: 220 VPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTID 279
Query: 412 NSDKFYECPVQAGCRSRMNVTDIFFT 437
S+ FY + G RS MNVT F
Sbjct: 280 ESNGFYVGHAEKGSRSLMNVT--FNL 303
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* Length = 360 | Back alignment and structure |
|---|
Score = 257 bits (659), Expect = 1e-80
Identities = 67/173 (38%), Positives = 104/173 (60%), Gaps = 13/173 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FG+I AGAQKN+GP+G+TVVIV++DLL + PT+ + + ++S+YNTPPTF +++
Sbjct: 187 FGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYM 246
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
++ V WIK GG + + + +K+ ++Y ID S+ FY + G
Sbjct: 247 LRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE 306
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHK 608
L++ FL +AK + L GHR VGG RASIYNA+ +D + L + M +F+
Sbjct: 307 ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* Length = 362 | Back alignment and structure |
|---|
Score = 472 bits (1217), Expect = e-164
Identities = 133/386 (34%), Positives = 193/386 (50%), Gaps = 86/386 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
NF AGPA LP EVLE + +DY+ TG+S+MEMSHR A Y ++N+ QA L L
Sbjct: 5 AYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLAL--- 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
+ P YK+LF+QGG + FA + MN +
Sbjct: 62 ----------------------------LGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQ 93
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
A+YV+TGSW+ KA EA+ G ++
Sbjct: 94 TANYVMTGSWASKALKEAKLIGDTHVA--------------------------------- 120
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
S +A S Y+++P A+YL+ NET++G +F
Sbjct: 121 ---ASSEA-----------------SNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFK 160
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
PD+ +PL+ DMSS+ LSR FD+++FG++ AGAQKN+GP+G+TVVIVREDL+ +
Sbjct: 161 AFPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKH 220
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
PT+ + NNS+YNTPP+F ++++ V WI+ +GGL ++Q + +K+ L+Y ID
Sbjct: 221 LPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAID 280
Query: 412 NSDKFYECPVQAGCRSRMNVTDIFFT 437
S FY V RS MN+T F
Sbjct: 281 QSGGFYRGCVDVDSRSDMNIT--FRL 304
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* Length = 362 | Back alignment and structure |
|---|
Score = 259 bits (665), Expect = 2e-81
Identities = 70/174 (40%), Positives = 105/174 (60%), Gaps = 13/174 (7%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FG++ AGAQKN+GP+G+TVVIVREDL+ + PT+ + NNS+YNTPP+F +++
Sbjct: 188 FGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYM 247
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
+ V WI+ +GGL ++Q + +K+ L+Y ID S FY V
Sbjct: 248 VNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASE 307
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
L++ F+K ++ + LKGHR VGG+RASIYNA+ + LV+FM+ F+
Sbjct: 308 ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSR 361
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* Length = 386 | Back alignment and structure |
|---|
Score = 466 bits (1201), Expect = e-161
Identities = 138/400 (34%), Positives = 193/400 (48%), Gaps = 91/400 (22%)
Query: 39 RIHTTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKIN 98
+ AM+ V NF +GPA LP EVL+ ++ L D+ G SVME+SHR ++ ++
Sbjct: 19 YFQSNAMA----QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVA 74
Query: 99 NDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGM 158
+ + R+L +N+P+NYK+LF GGG G
Sbjct: 75 EEAEQDFRDL-------------------------------LNIPSNYKVLFCHGGGRGQ 103
Query: 159 FAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP 218
FA V +NL+G ADYV G W+ A EA+KY ++ K++
Sbjct: 104 FAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQIIDAKITV-------------- 149
Query: 219 EASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLY 278
++ W A+YL+
Sbjct: 150 --------------------------------------DGKRAVKPMREWQLSDNAAYLH 171
Query: 279 YCDNETVDGVEFNYIPD-SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITV 337
YC NET+DG+ + PD + + +D SS LS DVS++GVI AGAQKNIGPAG+T+
Sbjct: 172 YCPNETIDGIAIDETPDFGPEVVVTADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTL 231
Query: 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 397
VIVREDLL A P++ + + DN+S++NTPPTF ++ VF W+K QGG+A M +
Sbjct: 232 VIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHK 291
Query: 398 NSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFT 437
+ QK+ LLY IDNSD FY V RSRMNV F
Sbjct: 292 INQQKAELLYGVIDNSD-FYRNDVAQANRSRMNVP--FQL 328
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* Length = 386 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 4e-80
Identities = 82/174 (47%), Positives = 111/174 (63%), Gaps = 14/174 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
+GVI AGAQKNIGPAG+T+VIVREDLL A P++ + + DN+S++NTPPTF ++
Sbjct: 213 YGVIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYL 272
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
VF W+K QGG+A M + + QK+ LLY IDNSD FY V
Sbjct: 273 SGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRNDVAQANRSRMNVPFQLADN 331
Query: 556 PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
LD++FL+E+ A + LKGHR+VGG+RASIYNA+ ++ L FM +F +H
Sbjct: 332 TLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERRH 385
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} Length = 377 | Back alignment and structure |
|---|
Score = 457 bits (1177), Expect = e-158
Identities = 168/391 (42%), Positives = 217/391 (55%), Gaps = 93/391 (23%)
Query: 52 VINFGAG----------PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDT 101
+ +G + LP VL E+++ LLDY+ GISV+EMSHRS+D+ KI N+T
Sbjct: 4 HHHHSSGVDLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNT 63
Query: 102 QAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAA 161
+ +RELL VP+NYK++FLQGGG G F+AV +NLI
Sbjct: 64 ENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAG-------------------- 103
Query: 162 VAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221
ADYVVTG+WS KAA EA+K+G +N+V PK+ Y IPD STWN +P+AS
Sbjct: 104 ---------RCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDAS 154
Query: 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCD 281
Y+YYC NETV G ++ IPD
Sbjct: 155 YVYYCANETVHG-----------------------VEFDFIPD----------------- 174
Query: 282 NETVDGVEFNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVR 341
+G LV DMSSNFLS+ DVSKFGVI AGAQKN+G AG+TVVIVR
Sbjct: 175 --------------VKGAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVR 220
Query: 342 EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 401
+DLL +AL P+V +K+ A N+S+YNTPP F ++V+ V WIK GG A ME+ S
Sbjct: 221 DDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSI 280
Query: 402 KSVLLYQEIDNSDKFYECPVQAGCRSRMNVT 432
KS +Y+ IDNS FY CPV+ RS+MN+
Sbjct: 281 KSQTIYEIIDNSQGFYVCPVEPQNRSKMNIP 311
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} Length = 377 | Back alignment and structure |
|---|
Score = 260 bits (668), Expect = 1e-81
Identities = 87/178 (48%), Positives = 113/178 (63%), Gaps = 17/178 (9%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHV 508
FGVI AGAQKN+G AG+TVVIVR+DLL +AL P+V +K+ A N+S+YNTPP F ++V
Sbjct: 198 FGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYV 257
Query: 509 IQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------- 555
+ V WIK GG A ME+ S KS +Y+ IDNS FY CPV+
Sbjct: 258 MGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNA 317
Query: 556 ----PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
L++ FL +A NM+ LKGHR VGGIRAS+YNA+T+++ L FMK+F H
Sbjct: 318 KGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} Length = 361 | Back alignment and structure |
|---|
Score = 451 bits (1163), Expect = e-156
Identities = 111/383 (28%), Positives = 174/383 (45%), Gaps = 91/383 (23%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
INF AGP+ LP E+LE+ ++ L DY+ G S+ME+SHR+ + +++ Q ++L +
Sbjct: 6 KINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYEL 65
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
++Y++LFLQGG + FA + MNL G
Sbjct: 66 NDDYEVLFLQGGASLQFAMIPMNL--------------------------------ALNG 93
Query: 172 KADYVVTGSWSKKAAAEAEKYG-KVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 230
+Y TG W+KKA EA+ G V V
Sbjct: 94 VCEYANTGVWTKKAIKEAQILGVNVKTV-------------------------------- 121
Query: 231 VDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290
S + S + IP A Y Y C N T+ G ++
Sbjct: 122 ----ASSEE-----------------SNFDHIPR---VEFSDNADYAYICSNNTIYGTQY 157
Query: 291 NYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYAL- 349
P + PL+ D SS+F SRK D S + G QKN G +G++ + +R+D+LE +
Sbjct: 158 QNYPKT-KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKN 216
Query: 350 PITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409
P++ ++ +A+N S++NTPPTF +++ W+ QGGL K+ + + QK+ +LY+
Sbjct: 217 KQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYEC 276
Query: 410 IDNSDKFYECPVQAGCRSRMNVT 432
ID S+ FY+ RS MNV+
Sbjct: 277 IDLSNGFYKGHADKKDRSLMNVS 299
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} Length = 361 | Back alignment and structure |
|---|
Score = 256 bits (657), Expect = 4e-80
Identities = 66/177 (37%), Positives = 107/177 (60%), Gaps = 15/177 (8%)
Query: 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYAL-PITPTVFHFKINADNNSVYNTPPTFVVH 507
+ G QKN G +G++ + +R+D+LE + P++ ++ +A+N S++NTPPTF ++
Sbjct: 185 IALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIY 244
Query: 508 VIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGF------------ 555
+ W+ QGGL K+ + + QK+ +LY+ ID S+ FY+
Sbjct: 245 MFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAK 304
Query: 556 --PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610
L+ LF+KEA+ MI LKGHR++GGIRASIYNA+ +D+ L +FMKEF+ K++
Sbjct: 305 NKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGKYA 361
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* Length = 398 | Back alignment and structure |
|---|
Score = 339 bits (871), Expect = e-111
Identities = 72/396 (18%), Positives = 118/396 (29%), Gaps = 108/396 (27%)
Query: 54 NFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPN 113
FG+GP+K+ E L+ +T ++ SHR A + ++ L EL ++P+
Sbjct: 43 RFGSGPSKVRLEQLQ-------TLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPD 95
Query: 114 NYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKA 173
Y+++ GG T + A A LI ++
Sbjct: 96 GYEVILGNGGATAFWDAAAFGLID---------------------------------KRS 122
Query: 174 DYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 233
++ G +S K A+ K V I S S P+ DP + + NET G
Sbjct: 123 LHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPE---PQTDPSVDVIAWAHNETSTG 179
Query: 234 SWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNYI 293
V++ +
Sbjct: 180 --------------------------VAVAVR--------------------------RP 187
Query: 294 PDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLE------ 346
S +V D +S D+++ QKN G+ + I+ L
Sbjct: 188 EGSDDALVVIDATSGAGGLPVDIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIA 247
Query: 347 YALPITPTVFHFKINADN---NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKS 403
P I +N N YNTP + ++ W+ GGL + + S
Sbjct: 248 ATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSS 307
Query: 404 VLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFS 439
LY G RS++ T F
Sbjct: 308 QRLYSWAQERPYTTPFVTDPGLRSQVVGT---IDFV 340
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* Length = 398 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 2e-52
Identities = 31/197 (15%), Positives = 57/197 (28%), Gaps = 33/197 (16%)
Query: 445 SAFF--------FGVIIAGAQKNIG-PAGITVVIVREDLLE------YALPITPTVFHFK 489
S QKN G+ + I+ L P
Sbjct: 201 SGAGGLPVDIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLP 260
Query: 490 INADN---NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 546
I +N N YNTP + ++ W+ GGL + + S LY
Sbjct: 261 IAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYT 320
Query: 547 YECPVQAGF-------------PLDELFLKEAKAHNMIQLKGHRLVG--GIRASIYNAIT 591
G K +A+ ++ + +R +G +R +++ A+
Sbjct: 321 TPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVE 380
Query: 592 VDEAVILVKFMKEFRHK 608
D+ L + + +
Sbjct: 381 PDDVSALTECVDWVVER 397
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} Length = 362 | Back alignment and structure |
|---|
Score = 326 bits (838), Expect = e-107
Identities = 69/397 (17%), Positives = 127/397 (31%), Gaps = 113/397 (28%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
I F GP++L V + + L + + +SHRS + ++ L+ LL +
Sbjct: 5 KIYFTPGPSELYPTVRQHMITALDEK------IGVISHRSKKFEEVYKTASDNLKTLLEL 58
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+NY++LFL T ++ + N + +
Sbjct: 59 PSNYEVLFLA--------------------------------SATEIWERIIQNCVEK-- 84
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
K+ + V GS+SK+ A + G+
Sbjct: 85 KSFHCVNGSFSKRFYEFAGELGRE------------------------------------ 108
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
A E +GK + +A + NET GV
Sbjct: 109 -------AYKEEAAFGK-------------GFYPADITVPADAEIICLTHNETSSGVSMP 148
Query: 292 ------YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDL 344
+ ++ + D S+ KFD +K + QK G PAG+ V I+ + +
Sbjct: 149 VEDINTFRDKNKDALIFVDAVSSLPYPKFDWTKIDSVFFSVQKCFGLPAGLGVWILNDRV 208
Query: 345 LEYALPITPTVFH---------FKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKM 395
+E + + A N TP + ++ +V + Q +
Sbjct: 209 IEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDML-QISADGI 267
Query: 396 EQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVT 432
+ + +K+ L+ I++S F A RS +
Sbjct: 268 RKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIV 304
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} Length = 362 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 4e-49
Identities = 30/180 (16%), Positives = 63/180 (35%), Gaps = 24/180 (13%)
Query: 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFH---------FKINADNNSVY 498
+ QK G PAG+ V I+ + ++E + + A N
Sbjct: 182 IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTP 241
Query: 499 NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAG---- 554
TP + ++ +V + Q + + + +K+ L+ I++S F A
Sbjct: 242 ETPNAMNIFLLGKVTGDML-QISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSM 300
Query: 555 ----FP-----LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEF 605
+ + E + G + IR + + A ++++ LV+ +KE
Sbjct: 301 TTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEK 360
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 57/370 (15%), Positives = 101/370 (27%), Gaps = 115/370 (31%)
Query: 41 HTTAMSSAAHPV-INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINN 99
H + +NF GP EV + R+ +++
Sbjct: 8 HHHHHENLYFQGMLNFTVGPVMSSEEVRAI------------GAEQVPYFRTTEFSSTML 55
Query: 100 DTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMF 159
+ + + E P K +F+ TG M
Sbjct: 56 ENEKFMLEYAKAPEGSKAVFMTCSSTG------------------------------SME 85
Query: 160 AAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPE 219
A V N + K + GS+ + E +
Sbjct: 86 AVVM-NCFTKKDKVLVIDGGSFGHRFVQLCEIHE-------------------------- 118
Query: 220 ASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYY 279
+ KK E K+ +Y + + L
Sbjct: 119 ------IPYVALKLEHGKKLTKE------------KLYEYD----------NQNFTGLLV 150
Query: 280 CDNETVDGVEFNYIP------DSQGIPLVSD-MSSNFLSRKFDVSKFG--VIIAGAQKNI 330
+ET V + V D +S+ FL+ F++++ G V+I G+QK +
Sbjct: 151 NVDETSTAV-LYDTMMIGEFCKKNNMFFVCDCVSA-FLADPFNMNECGADVMITGSQKVL 208
Query: 331 -GPAGITVVIVREDLLEYALPITPTVFHF-----KINADNNSVYNTPPTFVVHVIQRVFA 384
P GI+V+++ +E +F N + TP ++ I
Sbjct: 209 ACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLK 268
Query: 385 WIKRQGGLAK 394
IK+ GG
Sbjct: 269 EIKKHGGADA 278
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 56/355 (15%), Positives = 97/355 (27%), Gaps = 111/355 (31%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP R V E + + + + L L
Sbjct: 8 LTPGPLTTSRTVKEA------------MLFDSCTWDDDYNIGVVEQIRQQLTALATASEG 55
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD 174
Y + LQG G+ + A + + +G K
Sbjct: 56 YTSVLLQGSGSY------------------------------AVEAVLG-SALGPQDKVL 84
Query: 175 YVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGS 234
V G++ + A G + D
Sbjct: 85 IVSNGAYGARMVEMAGLMG--------------------------------IAHHAYDCG 112
Query: 235 WSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV-----E 289
+ +A + + N DP S++ +ET G+ E
Sbjct: 113 EVARPDVQA------------IDAIL--------NADPTISHIAMVHSETTTGMLNPIDE 152
Query: 290 FNYIPDSQGIPLVSD-MSSNFLSRKFDVSKFGV--IIAGAQKNI-GPAGITVVIVREDLL 345
+ G + D MSS F D++ + +I+ A K I G G VI RE L
Sbjct: 153 VGALAHRYGKTYIVDAMSS-FGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKL 211
Query: 346 EYALPITPTVF-----HFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAK 394
+ ++ ++ DN+ + T PT V + + ++GG+A
Sbjct: 212 AACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAA 266
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 2e-07
Identities = 64/440 (14%), Positives = 131/440 (29%), Gaps = 117/440 (26%)
Query: 4 NFLSRKFDVSKLIAESTQFHSLYLGNIIRNTYLDSRIH-----------TTAMSSAAHPV 52
S + ++ +L+ + L L ++ N +++ TT V
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL-L--VLLNVQ-NAKAWNAFNLSCKILLTTRFKQ----V 277
Query: 53 INFGAGPAKLPREVLEEVKETLLDYESTGI--SVMEMSH----RSADYTKIN----NDTQ 102
+F A L+ TL E + ++ R N +
Sbjct: 278 TDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LTTNPRRLSIIA 334
Query: 103 AALRELLNVPNNYKILFLQGGGTGMFAAVAMN-LISSSMNV--PNNYKILFLQGGGTGMF 159
++R+ L +N+K + + +I SS+NV P Y+ +F + +F
Sbjct: 335 ESIRDGLATWDNWKHVNCD----------KLTTIIESSLNVLEPAEYRKMFDR---LSVF 381
Query: 160 ---AAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNR 216
A + L+ W ++ +V+ K+ KY S +
Sbjct: 382 PPSAHIPTILLSLI----------WFDVIKSDVM------VVVNKLHKY------SLVEK 419
Query: 217 DPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASY 276
P+ S + + K E + + V Y +IP + D Y
Sbjct: 420 QPKESTISIPS---IYLELKVKLENEYALHRSI------VDHY-NIPKTFDSD-DLIPPY 468
Query: 277 LYYCDNETVDGVEFNYIP----DSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGP 332
L D +++I + + ++ FL +F K I +
Sbjct: 469 L--------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK---IRHDSTAWNAS 517
Query: 333 AGITVVIVREDLLEYALPITP----------TVFHFKINADNNSVYNTPPTFVVHVIQRV 382
I + + L Y I + F + N + + T ++
Sbjct: 518 GSILNTL--QQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN-LICSKYTDLLR----- 569
Query: 383 FAWIKRQGGLAKMEQNSLQK 402
A + + + +Q+
Sbjct: 570 IALMAEDEAIFEEAHKQVQR 589
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Length = 353 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 25/136 (18%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP +P V + + + H + ++N Q L L +
Sbjct: 4 LTPGPTPIPERVQKALLRPMRG------------HLDPEVLRVNRAIQERLAALFDPGEG 51
Query: 115 YKILFLQGGGT-GMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKA 173
+ L G G+ GM A +A N+ +L L G F+ + G
Sbjct: 52 ALVAALAGSGSLGMEAGLA--------NLDRG-PVLVLV---NGAFSQRVAEMAALHGLD 99
Query: 174 DYVVTGSWSKKAAAEA 189
V+ + EA
Sbjct: 100 PEVLDFPPGEPVDPEA 115
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 22/135 (16%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP + +VL + S ++ + + LR ++ N
Sbjct: 6 LHVGPTTIKEDVLVA------------GLENNVGFTSKEFVEALAYSLKGLRYVMGASKN 53
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD 174
Y+ L + GGGT +V +L+ PN+ KIL + G+F + R
Sbjct: 54 YQPLIIPGGGTSAMESVT-SLLK-----PND-KILVVS---NGVFGDRWEQIFKRYPVNV 103
Query: 175 YVVTGSWSKKAAAEA 189
V+ S
Sbjct: 104 KVLRPSPGDYVKPGE 118
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 70/354 (19%), Positives = 108/354 (30%), Gaps = 110/354 (31%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
F AGP EVLE + V SHRS +Y K++ DT LRE L V
Sbjct: 24 FTAGPVACFPEVLEI------------MKVQMFSHRSKEYRKVHMDTVERLREFLEVEKG 71
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKAD 174
++L + GTG M A++ N + + GK
Sbjct: 72 -EVLLVPSSGTG------------------------------IMEASIR-NGVSKGGKVL 99
Query: 175 YVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGS 234
+ G++ K+ E G ++
Sbjct: 100 VTIIGAFGKRYKEVVESNG--------------------------------RKAVVLEYE 127
Query: 235 WSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV-----E 289
K E + + ++P+ + NET GV E
Sbjct: 128 PGKAVKPE------------DLDDALR--------KNPDVEAVTITYNETSTGVLNPLPE 167
Query: 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLE 346
+ + D S K+G V+ + +QK G P G+ + E LE
Sbjct: 168 LAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLE 227
Query: 347 YALPITPTVFHF------KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAK 394
A + ++F K + S +TPP V I I++ GG K
Sbjct: 228 IAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEK 281
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} Length = 379 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 45/329 (13%), Positives = 92/329 (27%), Gaps = 87/329 (26%)
Query: 56 GAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNY 115
A + L E S + ++H S + ++ ND + L+ + N
Sbjct: 3 TALRQDIDPNGLLEY--------SVVYTDRALNHMSKAFQEVMNDLLSNLKTVYNAEAA- 53
Query: 116 KILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADY 175
+ + G GT AVA ++ + L ++ G F+ ++ + A
Sbjct: 54 --VIIPGSGTYGMEAVA-RQLT-----IDE-DCLIIR---NGWFSYRWTQILEKGKFAKS 101
Query: 176 VVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSW 235
+ + EA K + V+K ++ +++ +Y ET G
Sbjct: 102 STVLTAERTEDTEAPKPFAPVDIETAVAK----------IKEDKSAIVYAPHVETSSGII 151
Query: 236 SKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNYIPD 295
+ I +S+ V + +D +
Sbjct: 152 LSEEY------------IKALSEAV---------HSVGGLLV-------IDCIA------ 177
Query: 296 SQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPT 354
S + L V+I+ QK +V++ ++
Sbjct: 178 SGCVWL-----------DMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESN 226
Query: 355 VFHF---------KINADNNSVY-NTPPT 373
F + + Y T PT
Sbjct: 227 CFSLDLKQWLTIMRAYENGGHAYHATMPT 255
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 621 | |||
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 100.0 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 100.0 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 100.0 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 100.0 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.97 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.97 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.95 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.95 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.95 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.95 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.95 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.95 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.94 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.94 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.94 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.94 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.94 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.94 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.93 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.92 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.92 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.91 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.91 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.91 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.91 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.91 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.89 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.89 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.88 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.88 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.88 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.85 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.78 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.77 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.75 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.72 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.71 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.7 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.7 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.65 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.65 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.64 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.63 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.63 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.63 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.63 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.62 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.61 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.61 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.61 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.6 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.6 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.6 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.59 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.59 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.59 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.59 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.59 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.59 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.59 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.59 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.58 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.58 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.58 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.58 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.58 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.57 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.57 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.57 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.56 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.56 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.56 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.56 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.56 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.56 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.55 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.54 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.54 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.54 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.53 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.53 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.53 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.51 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.51 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.51 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.5 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.5 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.49 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.49 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.49 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.48 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.48 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.48 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.48 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.48 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.47 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.47 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.47 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.47 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.46 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.46 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.46 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.45 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.45 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.45 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.44 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.44 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.44 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.43 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.43 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.41 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.41 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.41 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.4 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.4 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.4 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.4 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.38 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.38 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.37 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.36 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.36 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.35 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.35 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.34 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.34 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.34 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.34 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.34 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.33 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.33 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.33 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.33 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.32 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.32 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.31 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.31 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.31 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.31 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.3 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.3 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.29 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.29 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.27 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.24 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.21 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.2 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.2 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.18 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.18 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.17 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.17 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.17 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.17 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.17 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.16 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.16 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.15 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.15 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.15 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.14 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.14 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.14 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.14 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.14 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.09 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.09 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.08 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.07 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.07 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.07 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.07 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.06 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.06 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.06 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.04 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.04 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.03 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.02 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.02 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.01 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.0 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.0 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 98.99 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 98.96 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 98.95 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 98.94 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 98.93 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 98.92 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 98.92 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 98.89 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 98.88 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 98.88 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 98.87 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 98.86 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 98.85 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 98.84 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 98.8 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 98.78 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 98.75 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 98.75 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 98.74 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 98.73 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 98.72 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.72 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 98.71 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.7 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 98.68 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 98.66 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 98.66 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 98.09 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 98.64 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.64 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 98.57 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 98.54 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 98.52 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 98.5 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 98.48 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 98.43 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 98.35 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 98.25 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 98.25 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 98.23 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 98.22 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 98.21 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 98.17 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 98.08 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 98.07 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 97.99 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 97.95 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 97.08 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 97.84 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 97.47 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 97.45 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 97.35 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 97.25 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 96.89 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 96.86 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 96.73 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 96.61 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 96.01 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 95.71 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 95.58 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 95.47 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 95.43 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 95.35 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 95.33 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 95.33 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 95.32 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 94.8 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 94.61 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 94.26 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 94.19 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 94.18 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 94.11 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 94.08 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 93.91 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 93.74 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 93.67 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 93.64 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 93.57 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 93.52 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 93.38 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 93.23 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 93.16 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 93.07 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 92.97 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 92.56 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 92.39 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 92.22 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 92.19 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 91.58 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 91.3 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 90.69 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 89.6 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 89.13 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 87.71 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 87.28 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 86.16 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 83.18 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 82.23 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 82.45 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 81.33 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 80.92 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 80.81 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 80.62 |
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-61 Score=517.31 Aligned_cols=361 Identities=56% Similarity=0.911 Sum_probs=313.5
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
-.|+.|+++++|++|+++|.+++.+|.++|+|+++++||+++|.++++++|+.+++|||++++++|+|++||||+
T Consensus 14 ~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~----- 88 (377)
T 3e77_A 14 GTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCG----- 88 (377)
T ss_dssp -CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH-----
T ss_pred ccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHH-----
Confidence 358899999999999999999999999999999999999999999999999999999999887899999899999
Q ss_pred HHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCC--CCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 132 AMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGR--TGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 132 alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~--g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+|++++.|++.+ ||+++++++|.|+++|.++++++|.+.++.+.
T Consensus 89 --------------------------a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~-------- 134 (377)
T 3e77_A 89 --------------------------QFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPK-------- 134 (377)
T ss_dssp --------------------------HHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCC--------
T ss_pred --------------------------HHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEecc--------
Confidence 555577788754 89999999999999999999999864332211
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
+|+ .+..|+..++.+++++++|++|||||++|++
T Consensus 135 ------------------------~~~----------------------~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~ 168 (377)
T 3e77_A 135 ------------------------LGS----------------------YTKIPDPSTWNLNPDASYVYYCANETVHGVE 168 (377)
T ss_dssp ------------------------CSS----------------------SCSCCCGGGCCCCTTCSCEEEESEETTTTEE
T ss_pred ------------------------CCC----------------------cCCCCChHHhccCCCccEEEEeCccCchheE
Confidence 111 1112222344678899999999999999999
Q ss_pred cccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccC
Q psy8733 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYN 369 (621)
Q Consensus 290 ~p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~ 369 (621)
+|++++.+|++++||++|++|+.|+|+++||++++|+|||+||+|+|++|+|+++++++.+..|.|++|....+.+++++
T Consensus 169 ~pii~~~~~~~~~vD~~q~~g~~~id~~~~~~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~ 248 (377)
T 3e77_A 169 FDFIPDVKGAVLVCDMSSNFLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYN 248 (377)
T ss_dssp CSSCCCCTTCCEEEECTTTTTSSCCCGGGCSEEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSS
T ss_pred chhhhccCCCEEEEEcccccCCCCCchhhcCEEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCC
Confidence 99988889999999999999999999999999999999999999999999999999988888888888887666778899
Q ss_pred CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhhH
Q psy8733 370 TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFF 449 (621)
Q Consensus 370 TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~~ 449 (621)
|||+++|++|++||+|+.++||++++++|+++++++++++|++++|+++++.+++.||+++++
T Consensus 249 Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivs----------------- 311 (377)
T 3e77_A 249 TPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIP----------------- 311 (377)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEE-----------------
T ss_pred CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEE-----------------
Confidence 999999999999999999998899999999999999999999998898777677889998775
Q ss_pred HHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHH
Q psy8733 450 GVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 529 (621)
Q Consensus 450 ~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~ 529 (621)
+.. -
T Consensus 312 --------------------------------------f~~-~------------------------------------- 315 (377)
T 3e77_A 312 --------------------------------------FRI-G------------------------------------- 315 (377)
T ss_dssp --------------------------------------EEE-S-------------------------------------
T ss_pred --------------------------------------EEc-C-------------------------------------
Confidence 111 0
Q ss_pred HHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 530 LQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 530 ~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
.++++.+++..|++.++++||...+||+..|+||+|+++.+|.||+++|+++|++|.++|
T Consensus 316 --------------------~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 316 --------------------NAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp --------------------STTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 001001244678888899999999999999999999999999999999999999999998
Q ss_pred C
Q psy8733 610 S 610 (621)
Q Consensus 610 ~ 610 (621)
+
T Consensus 376 ~ 376 (377)
T 3e77_A 376 Q 376 (377)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-59 Score=500.23 Aligned_cols=357 Identities=40% Similarity=0.697 Sum_probs=307.5
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+++|||+|||+++|++|+++|.+++.+|.++|+|+++++||+++|.++++++|+.+++|||++++++|+|+++|||+
T Consensus 4 ~~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~--- 80 (361)
T 3m5u_A 4 MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASL--- 80 (361)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH---
T ss_pred cceEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHH---
Confidence 57899999999999999999999999999999999999999999999999999999999999887899998899999
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
++++++.|++ +|++++++++|.|+++|.++++++|....+++
T Consensus 81 ----------------------------a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~--------- 122 (361)
T 3m5u_A 81 ----------------------------QFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVA--------- 122 (361)
T ss_dssp ----------------------------HHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEE---------
T ss_pred ----------------------------HHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEe---------
Confidence 5555788888 78999999999999999999999986433322
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
.+|+.. +...|+. + +++++++|+++||||++|++
T Consensus 123 -----------------------~~~~g~--------------------~~~~~~~-~--l~~~t~lv~~~~~e~~tG~~ 156 (361)
T 3m5u_A 123 -----------------------SSEESN--------------------FDHIPRV-E--FSDNADYAYICSNNTIYGTQ 156 (361)
T ss_dssp -----------------------ECTTTT--------------------SCSCCCC-C--CCTTSSEEEEESEETTTTEE
T ss_pred -----------------------cccCcC--------------------CCcCChh-h--cCCCCCEEEEeCCCCCccee
Confidence 111110 1012333 2 67899999999999999999
Q ss_pred cccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCC-CCCceeeccccccCCCcc
Q psy8733 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP-ITPTVFHFKINADNNSVY 368 (621)
Q Consensus 290 ~p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~-~~P~~ld~~~~~~~~s~~ 368 (621)
+|.+++. |++++||++|++|+.|+|++++|++++|+|||+||+|+|++|+|+++++++.+ ..|.+++|....+.+.++
T Consensus 157 ~~~i~~~-~~~~~vD~~q~~g~~~id~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 235 (361)
T 3m5u_A 157 YQNYPKT-KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLF 235 (361)
T ss_dssp CSSCCCC-SSCEEEECGGGTTSSCCCCTTEEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCS
T ss_pred CCccccc-CCEEEEEcccccCCCCCCcccCCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCC
Confidence 8888775 99999999999999999999999999999999999999999999999999887 678888877665667889
Q ss_pred CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhh
Q psy8733 369 NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFF 448 (621)
Q Consensus 369 ~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~ 448 (621)
+|||+++|++|++||+|+.++||++++++|+++++++++++|++++|++....+++.||+++++
T Consensus 236 ~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivs---------------- 299 (361)
T 3m5u_A 236 NTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVS---------------- 299 (361)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEE----------------
T ss_pred CCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEE----------------
Confidence 9999999999999999999998899999999999999999999998875544456678887765
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
+.. -+
T Consensus 300 ---------------------------------------f~~-~~----------------------------------- 304 (361)
T 3m5u_A 300 ---------------------------------------FNI-AK----------------------------------- 304 (361)
T ss_dssp ---------------------------------------EEE-SS-----------------------------------
T ss_pred ---------------------------------------EEC-CC-----------------------------------
Confidence 111 00
Q ss_pred HHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
...++..|.+.++++||....||+..|+||+|.++..|.||+++|+++|++|.++
T Consensus 305 -------------------------~~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 305 -------------------------NKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp -------------------------CTTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------chhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 0023346778888999999999999999999999999999999999999999998
Q ss_pred cC
Q psy8733 609 HS 610 (621)
Q Consensus 609 ~~ 610 (621)
|.
T Consensus 360 ~~ 361 (361)
T 3m5u_A 360 YA 361 (361)
T ss_dssp HC
T ss_pred cC
Confidence 74
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-59 Score=502.81 Aligned_cols=357 Identities=45% Similarity=0.767 Sum_probs=277.8
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
++|||+|||+++|++|+++|.+++.++.++|.|+++++||+++|.++++++|+.+++|||++++++|+|+++|||+
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~---- 102 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRG---- 102 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTH----
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchH----
Confidence 6899999999999999999999999999999999999999999999999999999999999877899998899999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
++++++.|++.+||+++++++|.|+++|..+++++| ...+++..
T Consensus 103 ---------------------------a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~-------- 146 (386)
T 3qm2_A 103 ---------------------------QFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAK-------- 146 (386)
T ss_dssp ---------------------------HHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECE--------
T ss_pred ---------------------------HHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecC--------
Confidence 455577888888999999999999999999999988 43222210
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc-
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE- 289 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~- 289 (621)
..+||..++ ++..+..+++++++|+++||||++|++
T Consensus 147 ---------------------~~~~G~~~~----------------------~~~~~~~l~~~t~lV~~~h~et~tG~~i 183 (386)
T 3qm2_A 147 ---------------------ITVDGKRAV----------------------KPMREWQLSDNAAYLHYCPNETIDGIAI 183 (386)
T ss_dssp ---------------------EEETTEEEE----------------------CCGGGCCCCTTCSCEEECSEETTTTEEC
T ss_pred ---------------------cccCCCCCC----------------------chHHHhhcCCCCcEEEEECCcCCcCEec
Confidence 001332121 111123577899999999999999997
Q ss_pred ccc--ccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCc
Q psy8733 290 FNY--IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSV 367 (621)
Q Consensus 290 ~p~--i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~ 367 (621)
+|+ |+ +|++++||++|++|+.|+|+++||++++|+|||+||+|+|++|+|+++++++.+..|.+++|....+.+.+
T Consensus 184 ~pi~~i~--~g~~~~vDa~qs~g~~pidv~~~~~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~ 261 (386)
T 3qm2_A 184 DETPDFG--PEVVVTADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSM 261 (386)
T ss_dssp CCCCCCC--TTCCEEEECTTTTTSSCCCGGGCSEEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC---
T ss_pred Cchhhhc--CCCEEEEEcccccCCCCCCccccCEEEEecccccCCCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCC
Confidence 775 44 79999999999999999999999999999999999999999999999999888877877777766667788
Q ss_pred cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchh
Q psy8733 368 YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAF 447 (621)
Q Consensus 368 ~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~ 447 (621)
++|||+++|++|++||+|+.++||++++++|+++++++++++|+++ |++..+.+++.||+++++
T Consensus 262 ~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~--------------- 325 (386)
T 3qm2_A 262 FNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVP--------------- 325 (386)
T ss_dssp ----CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEE---------------
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEE---------------
Confidence 9999999999999999999999889999999999999999999998 476665567789988765
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
+.. .
T Consensus 326 ----------------------------------------f~~--~---------------------------------- 329 (386)
T 3qm2_A 326 ----------------------------------------FQL--A---------------------------------- 329 (386)
T ss_dssp ----------------------------------------EEE--S----------------------------------
T ss_pred ----------------------------------------EEC--C----------------------------------
Confidence 111 0
Q ss_pred HHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
+..++..|++.++++||....||+..|+||+|+|+.+|.||+++|+++|++|.+
T Consensus 330 --------------------------~~~~~~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~ 383 (386)
T 3qm2_A 330 --------------------------DNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFER 383 (386)
T ss_dssp --------------------------SGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred --------------------------CccccHHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 012335677788999999999999999999999999999999999999999999
Q ss_pred HcC
Q psy8733 608 KHS 610 (621)
Q Consensus 608 ~~~ 610 (621)
+|+
T Consensus 384 ~~~ 386 (386)
T 3qm2_A 384 RHG 386 (386)
T ss_dssp HHC
T ss_pred hcC
Confidence 985
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=332.21 Aligned_cols=359 Identities=43% Similarity=0.764 Sum_probs=278.7
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
.++|+|+|||+++|++|++++.+.+.++.+.|.|.+...||++.+.++++++|+.+++++|++++++++++++|||+
T Consensus 3 ~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~--- 79 (362)
T 2c0r_A 3 ERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGAST--- 79 (362)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHH---
T ss_pred cceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchH---
Confidence 46899999999999999999999998887778887777899999999999999999999999865577666688998
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
++| +++.+++.+||+++++.++.|+++|...++++| ..+..+..
T Consensus 80 --a~~--------------------------~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~------- 123 (362)
T 2c0r_A 80 --QFA--------------------------MIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASS------- 123 (362)
T ss_dssp --HHH--------------------------HHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEEC-------
T ss_pred --HHH--------------------------HHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecc-------
Confidence 333 355667788888888888999998888888888 54332210
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
. ..+++..++.+++.+++++++|+++|.+|+||+.
T Consensus 124 -----------------------~----------------------~~~~~~~~~~~~~~i~~~t~~v~~~~~~n~tG~~ 158 (362)
T 2c0r_A 124 -----------------------E----------------------ASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQ 158 (362)
T ss_dssp -----------------------G----------------------GGTTCSCCCGGGCCCCTTEEEEEEESEETTTTEE
T ss_pred -----------------------c----------------------ccccccCCCHHHcccCCCcCEEEEeCCcCcccee
Confidence 0 0001112223333467889999999999999996
Q ss_pred cccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccC
Q psy8733 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYN 369 (621)
Q Consensus 290 ~p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~ 369 (621)
.+.+.+-+|+++++|+++++|+.|+|++++|++++|+||++||+|+|++++++++++++.+..|.++++....+.....+
T Consensus 159 ~~~l~~i~~~~vivD~a~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (362)
T 2c0r_A 159 FKAFPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYN 238 (362)
T ss_dssp CSSCCCCTTSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSS
T ss_pred cccccccCCCEEEEEChhhccCCccchhHCcEEEEeccccccCcCcEEEEEcHHHHhhccccCchHHhHHHHhhccCcCC
Confidence 33233338999999999999999999998999999999999999999999999998877665566666554334445678
Q ss_pred CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCchhhH
Q psy8733 370 TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSAFFF 449 (621)
Q Consensus 370 TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~~~~ 449 (621)
|||++.++++.++|+++.+.||++.+.++.+++++++++.|+++++++....++..+++.+++
T Consensus 239 t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~----------------- 301 (362)
T 2c0r_A 239 TPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNIT----------------- 301 (362)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEE-----------------
T ss_pred CchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEE-----------------
Confidence 999999999999999998876799999999999999999999986452221122234444432
Q ss_pred HHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHH
Q psy8733 450 GVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS 529 (621)
Q Consensus 450 ~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~ 529 (621)
+.. |.
T Consensus 302 --------------------------------------~~~----------~~--------------------------- 306 (362)
T 2c0r_A 302 --------------------------------------FRL----------AS--------------------------- 306 (362)
T ss_dssp --------------------------------------EEC----------SC---------------------------
T ss_pred --------------------------------------EEc----------CC---------------------------
Confidence 110 00
Q ss_pred HHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 530 LQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 530 ~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
.....+|.+.++++||....|++..+.||+|..+.++.||+++|++.|+++.++|
T Consensus 307 -------------------------~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 307 -------------------------EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp -------------------------HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------cchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 0012346667788899888888878889999999999999999999999998877
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=288.17 Aligned_cols=283 Identities=42% Similarity=0.769 Sum_probs=224.9
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+++|++++||.++|++|++++.+.+.++.+.|.+.++.+||++.+.+.++++|+.+++++|++++++|+|++|+||+
T Consensus 2 ~~~~~~~~g~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~--- 78 (360)
T 1w23_A 2 KQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASL--- 78 (360)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH---
T ss_pred CceEeecCCCcCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchH---
Confidence 46899999999999999999999987765667777777899999999999999999999999755689998665588
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+++++..+++.+|++.+.++++.|++.+...+++.| ..+..+..
T Consensus 79 ----------------------------al~~~~~~l~~~~~~g~~vi~~~~~~~~~~~~~~~g-~~~~v~~~------- 122 (360)
T 1w23_A 79 ----------------------------QFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLG-ETHIAAST------- 122 (360)
T ss_dssp ----------------------------HHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTS-EEEEEEEC-------
T ss_pred ----------------------------HHHHHHHHhcCCCCcccEEEecchhHHHHHHHHHhC-CeEEeecc-------
Confidence 344456677766777888889999998777777777 54332210
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
+ .+++..+++.+...+++++++|+++|.+|.||..
T Consensus 123 -------------------------------~--------------~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~ 157 (360)
T 1w23_A 123 -------------------------------K--------------ANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQ 157 (360)
T ss_dssp -------------------------------G--------------GGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEE
T ss_pred -------------------------------c--------------ccCcCCccchHhhccCCCCCEEEEeCCCCCccee
Confidence 0 0000112222222457789999999999999999
Q ss_pred cccccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccC
Q psy8733 290 FNYIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYN 369 (621)
Q Consensus 290 ~p~i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~ 369 (621)
.|.+.+++|+++|+|.+++.++.++++.++|++++|.||++||+|+|++++++++++++.+..+.++++....+.+..++
T Consensus 158 ~~~i~~~~~~~li~D~a~~~~~~~~~~~~~di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (360)
T 1w23_A 158 YQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYN 237 (360)
T ss_dssp CSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSS
T ss_pred cccccccCCceEEEechhhcCCCCcCcccCCEEEEEcccccCCCCcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCC
Confidence 87666789999999999999999999988899999999999999999999999998777655554444332222346678
Q ss_pred CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 370 TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 370 TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
|++...++++.++++++.+.||++.+.++.+++++++++.|++++++
T Consensus 238 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 284 (360)
T 1w23_A 238 TPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGF 284 (360)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 99999999999999999887679999999999999999999988754
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=276.95 Aligned_cols=340 Identities=23% Similarity=0.289 Sum_probs=261.9
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
+.++|+|||+++|++|++++.+.+.+ +..+.+|+++++.+.++++++.+++++|++++++|+|+ +|||+
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~-~g~t~---- 72 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDE------KIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFL-ASATE---- 72 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHT------TTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEE-SCHHH----
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcC------CccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-CCchH----
Confidence 57999999999999999999888743 12235789999999999999999999999766678886 67888
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
++++++.++..+ ++.++.++.|++.|...+++.|...+..+..
T Consensus 73 ---------------------------al~~~~~~l~~~--~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------- 115 (362)
T 3ffr_A 73 ---------------------------IWERIIQNCVEK--KSFHCVNGSFSKRFYEFAGELGREAYKEEAA-------- 115 (362)
T ss_dssp ---------------------------HHHHHHHHHCSS--EEEEEECSHHHHHHHHHHHHTTCEEEEEECC--------
T ss_pred ---------------------------HHHHHHHhccCC--cEEEEcCcHHHHHHHHHHHHhCCCeEEEecC--------
Confidence 333355666654 7788889999988888888888654332210
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
+. ...+.+.+.+++++++|++||.+|.+|...
T Consensus 116 ------------------------~~------------------------~~~d~~~l~~~~~~~~v~~~~~~nptG~~~ 147 (362)
T 3ffr_A 116 ------------------------FG------------------------KGFYPADITVPADAEIICLTHNETSSGVSM 147 (362)
T ss_dssp ------------------------TT------------------------CCCCGGGCCCCTTCCEEEEESEETTTTEEC
T ss_pred ------------------------CC------------------------CCCCHHHHhccCCccEEEEEcCCCCcceeC
Confidence 00 001122223667899999999999999999
Q ss_pred cc-----ccccC-CCcEEEecccccCCCcccccccceEEeccccccC-CCccEEEEEchhHHhhhCCC------CCceee
Q psy8733 291 NY-----IPDSQ-GIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI------TPTVFH 357 (621)
Q Consensus 291 p~-----i~~~~-g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~------~P~~ld 357 (621)
|+ +++++ |+++|+|+++++|+.++++++.|++++|.||++| |+|+|++++++++++++.+. .+.+++
T Consensus 148 ~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~ 227 (362)
T 3ffr_A 148 PVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHT 227 (362)
T ss_dssp CHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTSCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTS
T ss_pred CHHHHHHHHHhCCCCEEEEecccccCCcccChhHCcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCccccc
Confidence 95 56788 9999999999999999999888899999999997 99999999999998776542 122333
Q ss_pred ccc---cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCccccc
Q psy8733 358 FKI---NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDI 434 (621)
Q Consensus 358 ~~~---~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~ 434 (621)
+.. ..+...+++|+++..++++.++++++.+. |++++.++.+++++++++.|++++|+...+.++..++..+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~-- 304 (362)
T 3ffr_A 228 IPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQI-SADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIV-- 304 (362)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEE--
T ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEE--
Confidence 322 12335568899999999999999999988 799999999999999999999997776654333344443322
Q ss_pred ccccccccCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHH
Q psy8733 435 FFTFSHVQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA 514 (621)
Q Consensus 435 ~~t~~~~~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~ 514 (621)
+..
T Consensus 305 -----------------------------------------------------~~~------------------------ 307 (362)
T 3ffr_A 305 -----------------------------------------------------ANT------------------------ 307 (362)
T ss_dssp -----------------------------------------------------EEE------------------------
T ss_pred -----------------------------------------------------Eec------------------------
Confidence 111
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCC--CCccceeeccCCCH
Q psy8733 515 WIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRL--VGGIRASIYNAITV 592 (621)
Q Consensus 515 ~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~--~~~~r~~~~~a~~~ 592 (621)
+ . ...+|.+.++++||....|++. .+.||++....++.
T Consensus 308 -----------------------------------~----~-~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~ 347 (362)
T 3ffr_A 308 -----------------------------------T----M-LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSL 347 (362)
T ss_dssp -----------------------------------S----S-CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCH
T ss_pred -----------------------------------C----C-CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCH
Confidence 0 0 1245777788889988877765 45699999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8733 593 DEAVILVKFMKEFR 606 (621)
Q Consensus 593 ~~~~~l~~~~~~~~ 606 (621)
|+++.|++.|+++.
T Consensus 348 e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 348 EQVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=260.86 Aligned_cols=271 Identities=24% Similarity=0.354 Sum_probs=205.4
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+.+|+|+|||+++|++|++++.++ +.++.+.+||++++.+.++++|+.+++++|++++++|+|+++|||+
T Consensus 39 ~~~~~~~~~~~~~~~~v~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~--- 108 (398)
T 2fyf_A 39 PRDGRFGSGPSKVRLEQLQTLTTT-------AAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATA--- 108 (398)
T ss_dssp CSSCBCCSSSCCCCHHHHHGGGTT-------TTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHH---
T ss_pred cCCccccCCCCCCCHHHHHHHhhc-------CCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhH---
Confidence 468999999999999999998763 1122224588999999999999999999999854589984578999
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHh--CCceeeecccccccc
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKY--GKVNLVIPKVSKYVS 207 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~--G~~~~~~~~~~~~~~ 207 (621)
+++ +++.+++++| ++++..+.|+..+...+..+ |...+..+
T Consensus 109 --al~--------------------------~~~~~l~~~g--v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~------- 151 (398)
T 2fyf_A 109 --FWD--------------------------AAAFGLIDKR--SLHLTYGEFSAKFASAVSKNPFVGEPIIIT------- 151 (398)
T ss_dssp --HHH--------------------------HHHHHTCSSC--EEEEECSHHHHHHHHHHHHCTTSCCCEEEE-------
T ss_pred --HHH--------------------------HHHHHhcCCC--eEEEeCCHHHHHHHHHHHHhCCCCceEEEe-------
Confidence 333 3455566554 56778889988777777776 43211111
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
.+++ ...+. .+++++++|++||.+|.||
T Consensus 152 -------------------------~~~g------------------------~~~~~---~i~~~~~~v~~~~~~nptG 179 (398)
T 2fyf_A 152 -------------------------SDPG------------------------SAPEP---QTDPSVDVIAWAHNETSTG 179 (398)
T ss_dssp -------------------------CCTT------------------------CCCCC---CCCTTCSEEEEESEETTTT
T ss_pred -------------------------cCCC------------------------CCCCc---cccCCCCEEEEeCcCCCcc
Confidence 0011 11111 2567899999999999999
Q ss_pred ccccc--ccccCCCcEEEecccccCCCcccccccceEEeccccccCCC-ccEEEEEchhHHhhhCC------CCCceeec
Q psy8733 288 VEFNY--IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPA-GITVVIVREDLLEYALP------ITPTVFHF 358 (621)
Q Consensus 288 v~~p~--i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~-Glg~livr~~ll~~~~~------~~P~~ld~ 358 (621)
+..|+ +.+.+|+++|+|++++.|+.++++++.|++++|.||++|++ |+|++++++++++++.. ..+.++++
T Consensus 180 ~~~~~~~i~~~~~~~vivD~a~~~~~~~~~~~~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 259 (398)
T 2fyf_A 180 VAVAVRRPEGSDDALVVIDATSGAGGLPVDIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSL 259 (398)
T ss_dssp EECCCCCCTTCC-CEEEEECTTTTTTSCCCGGGCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCH
T ss_pred eecchHHhhhhcCCeEEEEeccccCCcccCcccCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEeh
Confidence 99996 55558999999999999999999987889999999999866 79999999999887632 12334443
Q ss_pred ccccc---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 359 KINAD---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 359 ~~~~~---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
....+ .+..++|+++..++++.++++++.+.|+++++.++.+++++++++.|++++|+...
T Consensus 260 ~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 323 (398)
T 2fyf_A 260 PIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPF 323 (398)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred HHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceec
Confidence 32111 24567899999999999999999888559999999999999999999998766554
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-29 Score=261.72 Aligned_cols=268 Identities=21% Similarity=0.278 Sum_probs=211.9
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
++.++|+|||+++|++|++++.+.+ ..|+++.+.+.++++++.+++++|++.+++++|+++|||+
T Consensus 18 ~~~~~~~pgp~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~--- 82 (376)
T 3f0h_A 18 QGMLNFTVGPVMSSEEVRAIGAEQV------------PYFRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTG--- 82 (376)
T ss_dssp SSCEECSSSSCCCCHHHHHHHTSCC------------CCCSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHH---
T ss_pred cCceeecCCCCCCcHHHHHHhcCCC------------CCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhH---
Confidence 4689999999999999999988754 3588889999999999999999999876688887788899
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
++++++..++.+||++.+..++.|++.+...+++.|...+..+.
T Consensus 83 ----------------------------al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~-------- 126 (376)
T 3f0h_A 83 ----------------------------SMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKL-------- 126 (376)
T ss_dssp ----------------------------HHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEEC--------
T ss_pred ----------------------------HHHHHHHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC--------
Confidence 33334556677888888888899998888888888864333221
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
++...+++|++ ++ .+++++++|.+++.+|.+|+.
T Consensus 127 ------------------------~~~~~~d~~~l---------------------~~-~~~~~~~~v~~~~~~nptG~~ 160 (376)
T 3f0h_A 127 ------------------------EHGKKLTKEKL---------------------YE-YDNQNFTGLLVNVDETSTAVL 160 (376)
T ss_dssp ------------------------CTTCCCCHHHH---------------------HT-TTTSCCCEEEEESEETTTTEE
T ss_pred ------------------------CCCCCCCHHHH---------------------HH-hhccCceEEEEecccCCccee
Confidence 01111222221 11 256789999999999999999
Q ss_pred ccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCC-CCc-eeecc
Q psy8733 290 FNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPI-TPT-VFHFK 359 (621)
Q Consensus 290 ~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~-~P~-~ld~~ 359 (621)
.|+ +++++|+++|+|++++++..++++++++ ++++|.||++| |+|+|++++++++++++.+. .+. ++++.
T Consensus 161 ~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (376)
T 3f0h_A 161 YDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLK 240 (376)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHH
T ss_pred cCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHH
Confidence 995 4568999999999999999999998865 99999999997 99999999999998887652 222 33332
Q ss_pred cc---ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 360 IN---ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 360 ~~---~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
.. .....+.+||+...++++.++++++.+.||++.+.++.+++++++++.|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 298 (376)
T 3f0h_A 241 DALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP 298 (376)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred HHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 21 12345678999999999999999999886799999999999999999998864
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=241.47 Aligned_cols=270 Identities=15% Similarity=0.216 Sum_probs=206.8
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
.+.++|+|||.++|++|++++.+.+ ..|+++.+.+.+++.++.++++++.+++.+|+|+ +|||++
T Consensus 22 ~~~~~~~p~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~-~gg~~a-- 86 (393)
T 3kgw_A 22 PTRLLLGPGPSNLAPRVLAAGSLRM------------IGHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVS-GSGHCA-- 86 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHTTCCC------------CCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEES-CCTTTH--
T ss_pred ccceeccCCCCCCCHHHHHHhcccc------------cCcccHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-CCcHHH--
Confidence 3569999999999999999987643 3577888889999999999999999876557765 778883
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
.++++..++.+||++.+...+.|+.++...++..|...+..+..
T Consensus 87 -----------------------------l~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~------- 130 (393)
T 3kgw_A 87 -----------------------------METALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKK------- 130 (393)
T ss_dssp -----------------------------HHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred -----------------------------HHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCC-------
Confidence 33345556778888888888999888888888888654332210
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEecccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDNETVDGV 288 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thnET~tGv 288 (621)
+...++++++ ++ .+++ ++++|.+++.+|.+|.
T Consensus 131 -------------------------~~~~~d~~~l---------------------~~-~i~~~~~~~v~~~~~~nptG~ 163 (393)
T 3kgw_A 131 -------------------------PGEHYTLQEV---------------------EE-GLAQHKPVLLFLVHGESSTGV 163 (393)
T ss_dssp -------------------------TTCCCCHHHH---------------------HH-HHHHHCCSEEEEESEETTTTE
T ss_pred -------------------------CCCCCCHHHH---------------------HH-HHhhCCCcEEEEeccCCcchh
Confidence 0001112221 00 1333 7899999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCC----Ccee
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPIT----PTVF 356 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~----P~~l 356 (621)
..|+ +++++|+++|+|.++++|..+++++.++ ++++|.||++ ||+|+|++++++++++++.+.. +.++
T Consensus 164 ~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
T 3kgw_A 164 VQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYT 243 (393)
T ss_dssp ECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred hccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceee
Confidence 9985 4568999999999999999999988775 8899999988 6999999999999988875432 1122
Q ss_pred eccc-------cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 357 HFKI-------NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 357 d~~~-------~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
++.. ........+|+++..++++.++++++.+. |++++.++.+++++++++.|+++ |+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 311 (393)
T 3kgw_A 244 DITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQ-GLENCWRRHREATAHLHKHLQEM-GLKFF 311 (393)
T ss_dssp CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT-TCCBS
T ss_pred cHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 2211 11223456799999999999999999888 89999999999999999999988 46543
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-27 Score=243.98 Aligned_cols=267 Identities=16% Similarity=0.198 Sum_probs=196.5
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCC-CEEEEEcCCcchhhhH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN-YKILFLQGGGTGMFAA 130 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~-yeI~f~~gggT~~~~a 130 (621)
.++|+|||+++|++|++++.+.+ .+|++..+.+.++++|+.+++++|++.+ .+|+|+ +|||+
T Consensus 3 ~~~~~~gp~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~-~g~t~---- 65 (384)
T 3zrp_A 3 KLLLHVGPTTIKEDVLVAGLENN------------VGFTSKEFVEALAYSLKGLRYVMGASKNYQPLIIP-GGGTS---- 65 (384)
T ss_dssp ---CCSSCSCCCHHHHHHTTCCS------------CCTTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEE-SCHHH----
T ss_pred ceeccCCCCCCCHHHHHHhhccc------------cccccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEc-CCcHH----
Confidence 47999999999999999988764 3567788899999999999999999763 367765 67888
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
+++ ++..++.+||++.+...++++..|...++..|...+..+..
T Consensus 66 -al~---------------------------~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------- 109 (384)
T 3zrp_A 66 -AME---------------------------SVTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPS-------- 109 (384)
T ss_dssp -HHH---------------------------HGGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCS--------
T ss_pred -HHH---------------------------HHHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEEEecCC--------
Confidence 333 23344556666666666777776777777777643332210
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEeccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDNETVDGVE 289 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thnET~tGv~ 289 (621)
+...+++|++ +. .+++ ++++|.+++.+|.+|..
T Consensus 110 ------------------------~~~~~d~~~l---------------------~~-~i~~~~~~~v~~~~~~nptG~~ 143 (384)
T 3zrp_A 110 ------------------------PGDYVKPGEV---------------------EE-EVRKSEYKLVALTHVETSTGVR 143 (384)
T ss_dssp ------------------------TTCCCCHHHH---------------------HH-HHHHSCEEEEEEESEETTTTEE
T ss_pred ------------------------CCCCCCHHHH---------------------HH-HHHhCCCcEEEEeCCCCCCceE
Confidence 0001122221 00 1233 68999999999999999
Q ss_pred ccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhh-CCCC--Cceeec
Q psy8733 290 FNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYA-LPIT--PTVFHF 358 (621)
Q Consensus 290 ~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~-~~~~--P~~ld~ 358 (621)
.|+ +++++|+++|+|.+++++..++++++++ ++++|.||++ ||+|+|++++++++++++ .+.. +.+++.
T Consensus 144 ~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (384)
T 3zrp_A 144 EPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDL 223 (384)
T ss_dssp CCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCH
T ss_pred CcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccH
Confidence 995 4678999999999999999999998765 9999999999 599999999999998887 4422 122222
Q ss_pred cccc---c-----CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 359 KINA---D-----NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 359 ~~~~---~-----~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
.... . ....++|+++..++++.++++++.+. |++.+.++.+++++++++.|+++ |+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 290 (384)
T 3zrp_A 224 RNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKE-GIENRIKRHTMVASAIRAGLEAL-GLEIV 290 (384)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT-TCCBS
T ss_pred HHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHC-CCeEc
Confidence 2111 0 22334699999999999999999887 89999999999999999999988 56443
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=241.10 Aligned_cols=275 Identities=16% Similarity=0.223 Sum_probs=203.3
Q ss_pred ccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Q psy8733 45 MSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGG 124 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~ggg 124 (621)
||...+.+|++++||++.|++|++++.+.+ ..|++..+.+.+++.|+.+++++|++.+ +|+|+ +||
T Consensus 3 fp~~~~~~yl~~~~~~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~t-~g~ 68 (392)
T 2z9v_A 3 YPEHADPVITLTAGPVNAYPEVLRGLGRTV------------LYDYDPAFQLLYEKVVDKAQKAMRLSNK-PVILH-GEP 68 (392)
T ss_dssp CCTTSCCSEECSSSCCCCCHHHHHHTTSCC------------CCTTSHHHHHHHHHHHHHHHHHTTCSSC-CEEES-SCT
T ss_pred cccCCCcceeecCCCcCCCHHHHHHHhccc------------cccccHHHHHHHHHHHHHHHHHhCCCCC-EEEEe-CCc
Confidence 454546799999999999999999988764 1366777888999999999999999743 67775 678
Q ss_pred chhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccc
Q psy8733 125 TGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSK 204 (621)
Q Consensus 125 T~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~ 204 (621)
|+ ++++ ++..++.+|+++.+..+++++..+...+++.|...+..+..
T Consensus 69 t~-----a~~~--------------------------~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-- 115 (392)
T 2z9v_A 69 VL-----GLEA--------------------------AAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVP-- 115 (392)
T ss_dssp HH-----HHHH--------------------------HHHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECC--
T ss_pred hH-----HHHH--------------------------HHHHhcCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCC--
Confidence 88 3333 34444567777777777787776677777778643332210
Q ss_pred ccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccc
Q psy8733 205 YVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 284 (621)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET 284 (621)
+...++++++ .+.++.++++++|.+++..|
T Consensus 116 ------------------------------~~~~~d~~~l--------------------~~~l~~~~~~~~v~~~~~~n 145 (392)
T 2z9v_A 116 ------------------------------YNEAIDPQAV--------------------ADMLKAHPEITVVSVCHHDT 145 (392)
T ss_dssp ------------------------------TTSCCCHHHH--------------------HHHHHHCTTCCEEEEESEEG
T ss_pred ------------------------------CCCCCCHHHH--------------------HHHHhcCCCCcEEEEeccCC
Confidence 0001122221 00111145789999999999
Q ss_pred cccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCC--C-
Q psy8733 285 VDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPIT--P- 353 (621)
Q Consensus 285 ~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~--P- 353 (621)
.||...|+ +++++|+++|+|.++++|..++++++++ ++++|.||++ ||+|+|++++++++++++.+.. +
T Consensus 146 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~ 225 (392)
T 2z9v_A 146 PSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPR 225 (392)
T ss_dssp GGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCC
T ss_pred CCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCC
Confidence 99999985 4568999999999999999999988765 8999999987 5999999999999988775421 2
Q ss_pred -ceeecccc----ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 354 -TVFHFKIN----ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 354 -~~ld~~~~----~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
.++++... .......+|+++..++++.++++++.+. |++++.++.+++++++++.|+++ |+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~ 293 (392)
T 2z9v_A 226 ASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNE-GPEAVWARHALTAKAMRAGVTAM-GLSV 293 (392)
T ss_dssp SSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred ceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 23332211 1123446799999999999999999887 79999999999999999999987 5543
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=244.24 Aligned_cols=269 Identities=15% Similarity=0.176 Sum_probs=204.7
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+..++|+|||.++|++|++++.+.+ ..|+++.+.+.++++++.++++++++.+ +++++++|||++
T Consensus 12 ~~~~~~~pgp~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~v~~~~sgt~a-- 76 (411)
T 3nnk_A 12 PSRLLMGPGPINADPRVLRAMSSQL------------IGQYDPAMTHYMNEVMALYRGVFRTENR-WTMLVDGTSRAG-- 76 (411)
T ss_dssp CCCEEESSSCCCCCHHHHHHHTSCC------------CCTTCHHHHHHHHHHHHHHHHHHTCCCS-EEEEEESCHHHH--
T ss_pred ccceeecCCCCCCCHHHHHHhhccc------------cccccHHHHHHHHHHHHHHHHHhCCCCC-cEEEECCCcHHH--
Confidence 4679999999999999999988653 4688889999999999999999999876 434445788983
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+ +.++..++.+||++.+..+++++..+...++..|...+..+..
T Consensus 77 ---l--------------------------~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~------- 120 (411)
T 3nnk_A 77 ---I--------------------------EAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVP------- 120 (411)
T ss_dssp ---H--------------------------HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred ---H--------------------------HHHHHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecC-------
Confidence 3 2344555677888888888888877778888888653332210
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEecccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDNETVDGV 288 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thnET~tGv 288 (621)
+...+++|++ ++ .+++ ++++|.+++.+|.+|+
T Consensus 121 -------------------------~~~~~d~~~l---------------------~~-~i~~~~~~~v~~~~~~nptG~ 153 (411)
T 3nnk_A 121 -------------------------WGEVFTPDQV---------------------ED-AVKRIRPRLLLTVQGDTSTTM 153 (411)
T ss_dssp -------------------------TTCCCCHHHH---------------------HH-HHHHHCCSEEEEESEETTTTE
T ss_pred -------------------------CCCCCCHHHH---------------------HH-HHhhCCCeEEEEeCCCCCcce
Confidence 0001122221 00 1232 7899999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCC---Cc---
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPIT---PT--- 354 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~---P~--- 354 (621)
..|+ +++++|+++|+|.+++++..++++++++ ++++|.||++ ||.|+|++++++++++++.+.. |.
T Consensus 154 ~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g 233 (411)
T 3nnk_A 154 LQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRT 233 (411)
T ss_dssp ECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCC
T ss_pred eccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccc
Confidence 9986 4567899999999999999999998875 9999999996 6999999999999988775432 11
Q ss_pred --------------eeecccc----ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 355 --------------VFHFKIN----ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 355 --------------~ld~~~~----~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++++... .......+|+++..++++.++++++.+. |++++.++.+++++++++.|+++ |+
T Consensus 234 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~ 311 (411)
T 3nnk_A 234 DAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQE-GLDYGIARHKLHGDALVKGIQAM-GL 311 (411)
T ss_dssp TTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred cccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 1111110 1223456899999999999999999888 89999999999999999999987 45
Q ss_pred cc
Q psy8733 417 YE 418 (621)
Q Consensus 417 ~~ 418 (621)
..
T Consensus 312 ~~ 313 (411)
T 3nnk_A 312 ET 313 (411)
T ss_dssp CB
T ss_pred Ee
Confidence 43
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=237.42 Aligned_cols=269 Identities=18% Similarity=0.250 Sum_probs=201.3
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
.++|++++||.++|++|++++.+.+ ..|+++.+.+.++++|+.+++++|++.+++|+|+ +|||++
T Consensus 18 ~~~~~~~~g~~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~-~g~t~a-- 82 (393)
T 2huf_A 18 PNKLLMGPGPSNAPQRVLDAMSRPI------------LGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLS-ASGHGG-- 82 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHTTSCC------------CCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEES-SCHHHH--
T ss_pred CCeEEecCCCCCCCHHHHHHHHhhh------------ccCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEc-CcHHHH--
Confidence 5789999999999999999987754 2345666788999999999999999764467775 778883
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
++ .++..++.+|+++.+..+++++..+...+++.|...+..+..
T Consensus 83 ---~~--------------------------~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~------- 126 (393)
T 2huf_A 83 ---ME--------------------------ATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSK------- 126 (393)
T ss_dssp ---HH--------------------------HHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred ---HH--------------------------HHHHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCC-------
Confidence 33 234445567777777777888866767777788643332210
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEecccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDNETVDGV 288 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thnET~tGv 288 (621)
+...++++++ +. .+++ ++++|.+++.+|.+|.
T Consensus 127 -------------------------~~~~~d~~~l---------------------~~-~i~~~~~~~v~~~~~~nptG~ 159 (393)
T 2huf_A 127 -------------------------VGQSLSLDEI---------------------RD-ALLIHKPSVLFLTQGDSSTGV 159 (393)
T ss_dssp -------------------------TTCCCCHHHH---------------------HH-HHHHHCCSEEEEESEETTTTE
T ss_pred -------------------------CCCCCCHHHH---------------------HH-HHhccCCcEEEEEccCCCccc
Confidence 0001111221 00 1334 6899999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCC----CCcee
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPI----TPTVF 356 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~----~P~~l 356 (621)
..|+ +++++|+++|+|.++++|..++++++++ ++++|.||++ ||+|+|++++++++++++.+. .|.++
T Consensus 160 ~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T 2huf_A 160 LQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYW 239 (393)
T ss_dssp ECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGG
T ss_pred cCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEE
Confidence 9985 4567899999999999999999988765 9999999997 699999999999998887653 23233
Q ss_pred e-------ccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 357 H-------FKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 357 d-------~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+ +........+++|+|+..++++.++++++.+. |++++.++.+++++++++.|+++ |+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 306 (393)
T 2huf_A 240 DMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEE-GLPALIARHEDCAKRLYRGLQDA-GFEL 306 (393)
T ss_dssp CHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred chHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 2 11111234566899999999999999999877 79999999999999999999987 4543
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=230.09 Aligned_cols=260 Identities=18% Similarity=0.209 Sum_probs=195.2
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
|||+|||+++|++|++++.+.+ ..|++..+.+.+++.|+.+++++|++. .+|+|+ +|||+ +
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g~~~-~~i~~~-~g~t~-----a 63 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQ------------LHHRTEAAREVFLKARGLLREAFRTEG-EVLILT-GSGTL-----A 63 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCC------------CCTTSHHHHHHHHHHHHHHHHHHTCSS-EEEEEE-SCHHH-----H
T ss_pred ccccCCCCCCCHHHHHHhccCC------------CCccCHHHHHHHHHHHHHHHHHhCCCC-ceEEEc-CchHH-----H
Confidence 8999999999999999998765 246778888899999999999999974 367776 67898 3
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
+++ ++..++.+|+++.+..+++++..+...+++.|...+..+..
T Consensus 64 ~~~--------------------------~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---------- 107 (352)
T 1iug_A 64 MEA--------------------------LVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYP---------- 107 (352)
T ss_dssp HHH--------------------------HHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECC----------
T ss_pred HHH--------------------------HHHhccCCCCeEEEEeCCchhHHHHHHHHHcCCceEEEeCC----------
Confidence 333 34445567777777777888876666777778643322210
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
+. +.+ +.+.+.. +++++|.+++..|.||...|+
T Consensus 108 ----------------------~~-----------------------~~~-d~~~l~~-~~~~~v~~~~~~nptG~~~~l 140 (352)
T 1iug_A 108 ----------------------YG-----------------------DTP-RPEDVAK-EGYAGLLLVHSETSTGALADL 140 (352)
T ss_dssp ----------------------TT-----------------------CCC-CTTTSCC-SSCSEEEEESEETTTTEECCH
T ss_pred ----------------------CC-----------------------CCC-CHHHHhc-cCCcEEEEEEecCCcceecCH
Confidence 00 000 1122222 578999999999999999985
Q ss_pred -----ccccC--CCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCCceeeccc--
Q psy8733 293 -----IPDSQ--GIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKI-- 360 (621)
Q Consensus 293 -----i~~~~--g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~~ld~~~-- 360 (621)
+++++ |+++|+|.++++|..++++++++ ++++|.||++ ||+|+|++++++++++++.+ ...++++..
T Consensus 141 ~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~-~~~~~~~~~~~ 219 (352)
T 1iug_A 141 PALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP-RGYYLDLAREL 219 (352)
T ss_dssp HHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC-CSSTTCHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhC-CCceeeHHHHH
Confidence 45677 99999999999999999988765 8999999977 69999999999998877654 222333221
Q ss_pred -cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 361 -NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 361 -~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
........+|++...++++.++++++.+. ++++.++.+++++++++.|+++ |+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~ 275 (352)
T 1iug_A 220 KAQKEGESAWTPAINLVLAVAAVLEEVLPR--LEEHLALKAWQNALLYGVGEEG-GLRP 275 (352)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred hhcccCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence 11224456799999999999999998764 8899999999999999999987 5543
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=236.86 Aligned_cols=270 Identities=16% Similarity=0.191 Sum_probs=203.8
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
++.++|+|||.++|++|++++.+.. .+|++..+.+.++++|+.+++++|++++ +++++++|||++
T Consensus 10 ~~~~~~~p~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g~~~~-~~~~~~~s~t~a-- 74 (416)
T 3isl_A 10 PLRTIMTPGPVEVDPRVLRVMSTPV------------VGQFDPAFTGIMNETMEMLRELFQTKNR-WAYPIDGTSRAG-- 74 (416)
T ss_dssp CCCEECSSSSCCCCHHHHHHTTSCC------------CCTTSHHHHHHHHHHHHHHHHHTTCCCS-EEEEEESCHHHH--
T ss_pred ccceeecCCCcCcCHHHHHHhcccC------------CCCccHHHHHHHHHHHHHHHHHhCCCCC-cEEEecCcHHHH--
Confidence 4679999999999999999876632 4567778899999999999999999865 565456888883
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
++ +++..++.+||++.+...++++..+...++..|...+..+..
T Consensus 75 ---l~--------------------------~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~------- 118 (416)
T 3isl_A 75 ---IE--------------------------AVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECE------- 118 (416)
T ss_dssp ---HH--------------------------HHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred ---HH--------------------------HHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecC-------
Confidence 32 344555677888888888888877777888888654332210
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCC-CCceEEEEecccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD-PEASYLYYCDNETVDGV 288 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~-~~t~~V~~thnET~tGv 288 (621)
+...+++|++ ++ .++ +++++|.++|.+|.+|.
T Consensus 119 -------------------------~~~~~d~~~l---------------------~~-~i~~~~~~~v~~~~~~nptG~ 151 (416)
T 3isl_A 119 -------------------------WGTVFDPEDI---------------------IR-EIKKVKPKIVAMVHGETSTGR 151 (416)
T ss_dssp -------------------------TTCCCCHHHH---------------------HH-HHHHHCCSEEEEESEETTTTE
T ss_pred -------------------------CCCCCCHHHH---------------------HH-HHhhCCCcEEEEEccCCCCce
Confidence 0001122221 00 133 47899999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCC--------
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPIT-------- 352 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~-------- 352 (621)
..|+ +++++|+++|+|+++++|..++++++++ ++++|.||++ ||+|+|++++++++++++.+..
T Consensus 152 ~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~ 231 (416)
T 3isl_A 152 IHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIAT 231 (416)
T ss_dssp ECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC---------
T ss_pred ecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccc
Confidence 9996 4568999999999999999999998775 9999999986 6999999999999988876421
Q ss_pred --------------Cceeecccc----ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 353 --------------PTVFHFKIN----ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 353 --------------P~~ld~~~~----~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.+++.... .......+|++...++++.++++++.+. |++++.++.+++++++++.|++.
T Consensus 232 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~- 309 (416)
T 3isl_A 232 QADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEE-GLETRFERHRHHEAALAAGIKAM- 309 (416)
T ss_dssp ---------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHc-
Confidence 111111111 1223456799999999999999999888 89999999999999999999986
Q ss_pred CcccC
Q psy8733 415 KFYEC 419 (621)
Q Consensus 415 g~~~~ 419 (621)
|+...
T Consensus 310 g~~~~ 314 (416)
T 3isl_A 310 GLRLF 314 (416)
T ss_dssp TCCBC
T ss_pred CCEec
Confidence 45443
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=241.96 Aligned_cols=259 Identities=16% Similarity=0.167 Sum_probs=186.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHh
Q psy8733 87 MSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNL 166 (621)
Q Consensus 87 ~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL 166 (621)
.+||+++|.++++++++.+++++|++ .+|+| ++|||+++++ ++ ++
T Consensus 26 ~~h~~~~~~~~~~~~~~~l~~~~~~~--~~v~~-~~sgt~a~~~-------------------------------~~-~~ 70 (379)
T 3ke3_A 26 LNHMSKAFQEVMNDLLSNLKTVYNAE--AAVII-PGSGTYGMEA-------------------------------VA-RQ 70 (379)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHTCS--EEEEE-ESCHHHHHHH-------------------------------HH-HH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCC--CEEEE-cCChhHHHHH-------------------------------HH-Hh
Confidence 58999999999999999999999997 25655 5889994333 32 34
Q ss_pred hCCCCcEEEEEcChHHHHHHHHHHHhCC--ceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHh
Q psy8733 167 IGRTGKADYVVTGSWSKKAAAEAEKYGK--VNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAE 244 (621)
Q Consensus 167 ~~~g~~~~~v~tG~~~~~~~~~a~~~G~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~ 244 (621)
+.+||++++..+++|+..|...+++.|. ..+..+.. .++. .....+| ..+++|++
T Consensus 71 ~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~g~------------~~~~~~~-~~~d~~~l 127 (379)
T 3ke3_A 71 LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAE----------RTED------------TEAPKPF-APVDIETA 127 (379)
T ss_dssp HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECE----------ESSC------------CSSCCCE-ECCCHHHH
T ss_pred CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecc----------cccc------------ccccCCC-CCCCHHHH
Confidence 4678888888889999988888888874 21111100 0000 0000001 01222221
Q ss_pred hhcccccccccCCCccCCCCccccCC-CCCceEEEEeccccccccccc---c-----ccccCCCcEEEecccccCCCccc
Q psy8733 245 KYGKVNLVIPKVSKYVSIPDQSTWNR-DPEASYLYYCDNETVDGVEFN---Y-----IPDSQGIPLVSDMSSNFLSRKFD 315 (621)
Q Consensus 245 ~~~~~~~~~~~~~~~~~ip~~~~l~i-~~~t~~V~~thnET~tGv~~p---~-----i~~~~g~llvvDavSs~G~~pID 315 (621)
++ .+ ++++++|+++|+||.+|+.+| + +++++|+++++|++|+ |..+++
T Consensus 128 ---------------------~~-~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~ 184 (379)
T 3ke3_A 128 ---------------------VA-KIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLD 184 (379)
T ss_dssp ---------------------HH-HHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCC
T ss_pred ---------------------HH-HHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCcccc
Confidence 00 12 236899999999999999999 4 3568999999999999 999999
Q ss_pred ccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCC-C-Cceeecccc------ccCCC--ccCCchHHHHHHHHHH
Q psy8733 316 VSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPI-T-PTVFHFKIN------ADNNS--VYNTPPTFVVHVIQRV 382 (621)
Q Consensus 316 v~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~-~-P~~ld~~~~------~~~~s--~~~TP~v~~I~aL~~a 382 (621)
+++++ ++++|+||++| |+|+|++++++++++++.+. . +.++++..+ .+.+. ..+|||+..++++.++
T Consensus 185 ~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aa 264 (379)
T 3ke3_A 185 MKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDA 264 (379)
T ss_dssp HHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHH
T ss_pred ccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHH
Confidence 98765 99999999995 99999999999999888652 2 223433211 11222 2369999999999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCC
Q psy8733 383 FAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 383 L~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
|+++.++ |++++.++.+++++++++.|++++ +.... ++..|++.
T Consensus 265 l~~~~~~-g~~~~~~~~~~l~~~l~~~l~~~g-~~~~~-~~~~~~~~ 308 (379)
T 3ke3_A 265 ILEAKEI-GFDILRDAQWELGNRVRKVLTDKG-IESVA-AEGFEAPG 308 (379)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHHHHHHHHHTT-CCBSB-CTTCBCSS
T ss_pred HHHHHHh-cHHHHHHHHHHHHHHHHHHHHHcC-CEecC-CccccCce
Confidence 9999998 899999999999999999999984 65543 23445553
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=231.91 Aligned_cols=270 Identities=19% Similarity=0.300 Sum_probs=198.9
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
.+.+++++||.++|++|++++.+.+ ..|+++.+...++++|+.++++++++.+++|+|+ +|||++
T Consensus 17 ~~~~~~~~~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~-~g~t~a-- 81 (396)
T 2ch1_A 17 PEKIMMGPGPSNCSKRVLTAMTNTV------------LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVS-GSAHAG-- 81 (396)
T ss_dssp CCCBCCSSSSCCCCHHHHHHTTSCC------------CCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEES-SCHHHH--
T ss_pred CcceeecCCCCCCCHHHHHHhcccc------------ccCCChhHHHHHHHHHHHHHHHhCCCCCcEEEEC-CcHHHH--
Confidence 4679999999999999999987653 2356677778899999999999999765467775 778983
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
++ .++..++.+|+++.+..+++++..|...++..|...+..+..
T Consensus 82 ---l~--------------------------~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~------- 125 (396)
T 2ch1_A 82 ---ME--------------------------AMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGP------- 125 (396)
T ss_dssp ---HH--------------------------HHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred ---HH--------------------------HHHHHhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEEecCC-------
Confidence 32 344455667788888888888876666778888653332210
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEecccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDNETVDGV 288 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thnET~tGv 288 (621)
+...++++++ +. .+++ ++++|.+++.+|.||.
T Consensus 126 -------------------------~~~~~d~~~l---------------------~~-~l~~~~~~~v~~~~~~nptG~ 158 (396)
T 2ch1_A 126 -------------------------PDRPFSLETL---------------------AR-AIELHQPKCLFLTHGDSSSGL 158 (396)
T ss_dssp -------------------------TTSCCCHHHH---------------------HH-HHHHHCCSEEEEESEETTTTE
T ss_pred -------------------------CCCCCCHHHH---------------------HH-HHHhCCCCEEEEECCCCCCce
Confidence 0001112221 00 1233 6899999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCC----CCcee
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPI----TPTVF 356 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~----~P~~l 356 (621)
..|+ +++++|+++|+|.++++|..++++++++ +++.|.||+++ |+|+|++++++++++.+... .+.++
T Consensus 159 ~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 238 (396)
T 2ch1_A 159 LQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYW 238 (396)
T ss_dssp ECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGG
T ss_pred ecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEe
Confidence 9985 3467899999999999999999998884 88899999985 99999999999998876432 12222
Q ss_pred ec-------cccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 357 HF-------KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 357 d~-------~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+. ..........+|+|...++++.++++++.+. +++.+.++.+++++++++.|+++ |+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 306 (396)
T 2ch1_A 239 DLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEE-GLENQIKRRIECAQILYEGLGKM-GLDIF 306 (396)
T ss_dssp CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHH-TCCBS
T ss_pred chHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHC-CCeec
Confidence 21 1101123456899999999999999998777 89999999999999999999987 45443
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=227.18 Aligned_cols=285 Identities=25% Similarity=0.339 Sum_probs=207.0
Q ss_pred chhccccccccchhhhhhccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHH
Q psy8733 27 LGNIIRNTYLDSRIHTTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALR 106 (621)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La 106 (621)
.|..+|..|+ |.. +.+|++++||.++|++|++++.+.+ .+|+++.+.+..+++++.++
T Consensus 6 ~~~~~r~~f~--------~~~--~~~~l~~~~~~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~la 63 (386)
T 2dr1_A 6 FEEAFKEVYE--------MVK--PKYKLFTAGPVACFPEVLEIMKVQM------------FSHRSKEYRKVHMDTVERLR 63 (386)
T ss_dssp CHHHHHHHHH--------HHS--CCSEECCSSSCCCCHHHHHHTTSCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHh--------hcC--ccceeecCCCcCCcHHHHHHHhccc------------ccccCHHHHHHHHHHHHHHH
Confidence 4556666664 221 3689999999999999999987654 23667777889999999999
Q ss_pred HHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHH
Q psy8733 107 ELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAA 186 (621)
Q Consensus 107 ~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~ 186 (621)
+++|+++.++|+|+ +|||++ ++ .++..++.+|+++.+..+++++..+.
T Consensus 64 ~~~g~~~~~~v~~~-~g~t~a-----~~--------------------------~~~~~l~~~gd~vl~~~~~~~~~~~~ 111 (386)
T 2dr1_A 64 EFLEVEKGEVLLVP-SSGTGI-----ME--------------------------ASIRNGVSKGGKVLVTIIGAFGKRYK 111 (386)
T ss_dssp HHHTCSSSEEEEES-SCHHHH-----HH--------------------------HHHHHHSCTTCEEEEEESSHHHHHHH
T ss_pred HHhCCCCCcEEEEe-CChHHH-----HH--------------------------HHHHHhhcCCCeEEEEcCCchhHHHH
Confidence 99999833357665 778883 32 23444556777777777777776677
Q ss_pred HHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcc
Q psy8733 187 AEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 266 (621)
Q Consensus 187 ~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~ 266 (621)
..++..|...+..+.. ..| ..+++++ .+
T Consensus 112 ~~~~~~g~~~~~v~~~------------------------------~~~--~~d~~~l--------------------~~ 139 (386)
T 2dr1_A 112 EVVESNGRKAVVLEYE------------------------------PGK--AVKPEDL--------------------DD 139 (386)
T ss_dssp HHHHHTTCEEEEEECC------------------------------TTC--CCCHHHH--------------------HH
T ss_pred HHHHHhCCceEEEecC------------------------------CCC--CCCHHHH--------------------HH
Confidence 7778888643332210 000 0112221 00
Q ss_pred ccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEE
Q psy8733 267 TWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 267 ~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~l 338 (621)
.++.++++++|.+++.+|.+|...|+ +++++|+++|+|.+++.|..++++.+++ ++++|.||++| |.|+|++
T Consensus 140 ~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~ 219 (386)
T 2dr1_A 140 ALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIG 219 (386)
T ss_dssp HHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEE
T ss_pred HHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEE
Confidence 11114678999999999999999885 4568999999999999999988888775 99999999997 7799999
Q ss_pred EEchhHHhhhCCC--CCceeecccc---cc-CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 339 IVREDLLEYALPI--TPTVFHFKIN---AD-NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 339 ivr~~ll~~~~~~--~P~~ld~~~~---~~-~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
++++++++++.+. ...++++... .. .....+|++....+++.++|+++.+.||++++.++.+++++++++.|++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~ 299 (386)
T 2dr1_A 220 AFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVRE 299 (386)
T ss_dssp EECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887542 1223333211 11 2344568999999999999999887768999999999999999999998
Q ss_pred cCCccc
Q psy8733 413 SDKFYE 418 (621)
Q Consensus 413 ~~g~~~ 418 (621)
+ |+..
T Consensus 300 ~-g~~~ 304 (386)
T 2dr1_A 300 I-GLDI 304 (386)
T ss_dssp T-TCCB
T ss_pred c-CCee
Confidence 7 4543
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=230.91 Aligned_cols=271 Identities=16% Similarity=0.217 Sum_probs=191.6
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCC---CCEEEEEcCCcch
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPN---NYKILFLQGGGTG 126 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~---~yeI~f~~gggT~ 126 (621)
++.++|+|||..++++|++++.+.+ ..|+++.+...+.++|+.++++++... ..+|+|+ +|||+
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~g~t~ 70 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKALDVPS------------LGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLA-GSGTL 70 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCC------------CCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEE-SCTTH
T ss_pred ccceeecCCCcCchHHHHHHHhccc------------cccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEc-CchHH
Confidence 4579999999999999999987653 246778888889999999999999752 2367776 67999
Q ss_pred hhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhh---CCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccc
Q psy8733 127 MFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI---GRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVS 203 (621)
Q Consensus 127 ~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~---~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~ 203 (621)
+ +++ ++..+. .+|+++++..++.|...+...++..|...+..+..
T Consensus 71 a-----l~~--------------------------~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~- 118 (385)
T 2bkw_A 71 G-----WDI--------------------------FASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL- 118 (385)
T ss_dssp H-----HHH--------------------------HHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-
T ss_pred H-----HHH--------------------------HHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC-
Confidence 3 333 333343 45555555555666655555667777643322210
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEecc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDN 282 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thn 282 (621)
++...++++++ ++ .+++ ++++|++++.
T Consensus 119 ------------------------------~~~~~~d~~~l---------------------~~-~l~~~~~~~v~~~~~ 146 (385)
T 2bkw_A 119 ------------------------------KIGESVPLELI---------------------TE-KLSQNSYGAVTVTHV 146 (385)
T ss_dssp ------------------------------STTSCCCHHHH---------------------HH-HHHHSCCSEEEEESE
T ss_pred ------------------------------CCCCCCCHHHH---------------------HH-HHhcCCCCEEEEEcc
Confidence 00000112221 00 1223 6899999999
Q ss_pred cccccccccc-----ccccC--CCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHh-hhCC-
Q psy8733 283 ETVDGVEFNY-----IPDSQ--GIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLE-YALP- 350 (621)
Q Consensus 283 ET~tGv~~p~-----i~~~~--g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~-~~~~- 350 (621)
.|.||+..|+ +++++ |+++|+|+++++|..++++++++ ++++|.||++ ||+|+|+++++++.++ ++.+
T Consensus 147 ~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~ 226 (385)
T 2bkw_A 147 DTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDS 226 (385)
T ss_dssp ETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHH
T ss_pred CCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhc
Confidence 9999999985 45677 99999999999999999988775 8999999988 5999999999999887 6531
Q ss_pred ----CCCceee---ccc----c-ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH-HccCCcc
Q psy8733 351 ----ITPTVFH---FKI----N-ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI-DNSDKFY 417 (621)
Q Consensus 351 ----~~P~~ld---~~~----~-~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L-~~~~g~~ 417 (621)
....+.+ +.. . ...+.+++|+++..++++.++++++.+. |++++.++.+++++++++.| +++ |+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~-g~~ 304 (385)
T 2bkw_A 227 KNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEE-GLHKRWDLHREMSDWFKDSLVNGL-QLT 304 (385)
T ss_dssp HHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTTT-CCE
T ss_pred cCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHhc-Cce
Confidence 1111111 100 0 1123345799999999999999999887 89999999999999999999 887 565
Q ss_pred cC
Q psy8733 418 EC 419 (621)
Q Consensus 418 ~~ 419 (621)
..
T Consensus 305 ~~ 306 (385)
T 2bkw_A 305 SV 306 (385)
T ss_dssp ES
T ss_pred ec
Confidence 43
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=227.68 Aligned_cols=265 Identities=17% Similarity=0.217 Sum_probs=193.7
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCcchhhhH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP-NNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p-~~yeI~f~~gggT~~~~a 130 (621)
.++|+|||+++|++|++++.+.+ ..|+++.+.+.++++|+.+++++|++ +.++|+|+ +|||+
T Consensus 1 ~~~~~~gp~~~~~~v~~a~~~~~------------~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t-~g~t~---- 63 (353)
T 2yrr_A 1 MLLLTPGPTPIPERVQKALLRPM------------RGHLDPEVLRVNRAIQERLAALFDPGEGALVAALA-GSGSL---- 63 (353)
T ss_dssp CEECSSSSCCCCHHHHGGGGSCC------------CCTTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEES-SCHHH----
T ss_pred CccCCCCCCCCCHHHHHHHhccc------------ccccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEc-CCcHH----
Confidence 37999999999999999988764 13678888899999999999999996 33467775 67888
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
++++ ++..+.. +++.+...++++..|...++..|...+..+..
T Consensus 64 -a~~~--------------------------~~~~~~~--d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------- 106 (353)
T 2yrr_A 64 -GMEA--------------------------GLANLDR--GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFP-------- 106 (353)
T ss_dssp -HHHH--------------------------HHHTCSC--CCEEEEECSHHHHHHHHHHHHTTCCEEEEECC--------
T ss_pred -HHHH--------------------------HHHHhcC--CcEEEEcCCCchHHHHHHHHHcCCceEEEeCC--------
Confidence 3333 3334433 56666666777765666777788643332210
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEeccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDNETVDGVE 289 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thnET~tGv~ 289 (621)
+...+++|++ +. .+++ ++++|.+++..|.||..
T Consensus 107 ------------------------~~~~~d~~~l---------------------~~-~l~~~~~~~v~~~~~~nptG~~ 140 (353)
T 2yrr_A 107 ------------------------PGEPVDPEAV---------------------AR-ALKRRRYRMVALVHGETSTGVL 140 (353)
T ss_dssp ------------------------TTSCCCHHHH---------------------HH-HHHHSCCSEEEEESEETTTTEE
T ss_pred ------------------------CCCCCCHHHH---------------------HH-HHHhCCCCEEEEEccCCCccee
Confidence 0000112221 00 1223 68899999999999999
Q ss_pred ccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCC-ceeeccc
Q psy8733 290 FNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITP-TVFHFKI 360 (621)
Q Consensus 290 ~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P-~~ld~~~ 360 (621)
.|+ +++++|+++|+|.++++|..++++++++ ++++|.||++ ||+|+|++++++++++++.. .+ .++++..
T Consensus 141 ~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~~~~~~~~~ 219 (353)
T 2yrr_A 141 NPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KRGWYLDLAR 219 (353)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CSCSTTCHHH
T ss_pred cCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc-CCCccccHHH
Confidence 985 4567899999999999999998888764 8999999987 68999999999999887753 22 2222211
Q ss_pred ---cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 361 ---NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 361 ---~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
........+|++...++++.++++++.+. |++++.++.+++++++++.|+++ |+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 279 (353)
T 2yrr_A 220 VAEHWERGGYHHTTPVLLHYALLEALDLVLEE-GVAARERRAREVYAWVLEELKAR-GFRPY 279 (353)
T ss_dssp HHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT-TCEES
T ss_pred HhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence 11123445799999999999999999887 89999999999999999999987 56543
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=225.08 Aligned_cols=270 Identities=20% Similarity=0.250 Sum_probs=194.2
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHH-HHHHHHHHHHHHHhCCCCC-CEEEEEcCCcchhh
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYT-KINNDTQAALRELLNVPNN-YKILFLQGGGTGMF 128 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~-~i~~~ar~~La~Ll~~p~~-yeI~f~~gggT~~~ 128 (621)
++++|++||...|++|++++.+. ..|+...+. +.+++.|+.+++++|.+.+ .+|+|+ +|||+
T Consensus 4 ~~~~~~~gp~~~~~~v~~a~~~~-------------~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~-~g~t~-- 67 (366)
T 1m32_A 4 NYLLLTPGPLTTSRTVKEAMLFD-------------SCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQ-GSGSY-- 67 (366)
T ss_dssp -CEECSSSSCCCCHHHHHTTCCC-------------CCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEE-SCHHH--
T ss_pred ccccccCCCcCCCHHHHHHHhhh-------------hcCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEe-cChHH--
Confidence 47999999999999999998763 247777777 8899999999999995433 257776 67888
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
++++ ++..+..+|+++.+...+.|+..+...++..|...+..+..
T Consensus 68 ---a~~~--------------------------~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~------ 112 (366)
T 1m32_A 68 ---AVEA--------------------------VLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCG------ 112 (366)
T ss_dssp ---HHHH--------------------------HHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECC------
T ss_pred ---HHHH--------------------------HHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCC------
Confidence 3332 44445566777766666777765666677778643322210
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV 288 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv 288 (621)
+....+++++ .+.+.-++++++|.+++.+|.+|.
T Consensus 113 --------------------------~~~~~d~~~l--------------------~~~l~~~~~~~~v~~~~~~nptG~ 146 (366)
T 1m32_A 113 --------------------------EVARPDVQAI--------------------DAILNADPTISHIAMVHSETTTGM 146 (366)
T ss_dssp --------------------------TTSCCCHHHH--------------------HHHHHHCTTCCEEEEESEETTTTE
T ss_pred --------------------------CCCCCCHHHH--------------------HHHHhcCCCeEEEEEecccCCcce
Confidence 0000112221 001111235789999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCC-Cceeecc
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPIT-PTVFHFK 359 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~-P~~ld~~ 359 (621)
..|+ +++++|+++|+|.++++|..++++++++ ++++|.||++ ||.|+|++++++++++++.+.. +.+++..
T Consensus 147 ~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 1m32_A 147 LNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLY 226 (366)
T ss_dssp ECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHH
T ss_pred ecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHH
Confidence 9985 4567899999999999999999988764 8999999998 6999999999999988765432 2222211
Q ss_pred cc-----ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 360 IN-----ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 360 ~~-----~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
.. ...+...+|++...++++.++++++.+.||++.+.++.+++++++++.|+++ |+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~ 289 (366)
T 1m32_A 227 AQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNT 289 (366)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred HHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCee
Confidence 10 0112334699999999999999999888349999999999999999999987 4543
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=216.94 Aligned_cols=269 Identities=12% Similarity=0.073 Sum_probs=188.1
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+|++++++++.|++|++++.+.+.+....+.+ .+..+....+.++++|+.+++++|++.+ +|+|+ +|||+
T Consensus 2 iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~-~g~~~----- 71 (382)
T 4hvk_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSS---VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFT-SGATE----- 71 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC---SSHHHHHHHHHHHHHHHHHHHHTTCTTE-EEEEE-SSHHH-----
T ss_pred EeecCCCcCCCCHHHHHHHHHHHHhhcCCCcc---cchHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEE-CCchH-----
Confidence 69999999999999999999998764432222 2223456778999999999999999653 68776 67888
Q ss_pred HHHHhhhccCC---CCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH-HHHHHHHHhCCceeeecccccccc
Q psy8733 132 AMNLISSSMNV---PNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK-KAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 132 alNlla~~~~~---~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~-~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
+++++...+.+ ++||+|++. ..++.+. .....+++.|...+..+..
T Consensus 72 a~~~~~~~~~~~~~~~gd~vi~~-------------------------~~~~~~~~~~~~~~~~~g~~~~~v~~~----- 121 (382)
T 4hvk_A 72 ANNLAIIGYAMRNARKGKHILVS-------------------------AVEHMSVINPAKFLQKQGFEVEYIPVG----- 121 (382)
T ss_dssp HHHHHHHHHHHHHGGGCCEEEEE-------------------------TTCCHHHHHHHHHHHHTTCEEEEECBC-----
T ss_pred HHHHHHHHhhhhhcCCCCEEEEC-------------------------CCCcHHHHHHHHHHHhcCCEEEEeccC-----
Confidence 34443222221 344444443 3333332 1223445567543322210
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
+...+++|++ + -.+++++++|.+++..|.+|
T Consensus 122 ---------------------------~~~~~d~~~l---------------------~-~~i~~~~~~v~~~~~~nptG 152 (382)
T 4hvk_A 122 ---------------------------KYGEVDVSFI---------------------D-QKLRDDTILVSVQHANNEIG 152 (382)
T ss_dssp ---------------------------TTSCBCHHHH---------------------H-HHCCTTEEEEECCSBCTTTC
T ss_pred ---------------------------CCCCcCHHHH---------------------H-HHhccCceEEEEECCCCCce
Confidence 0001122221 1 12567899999999999999
Q ss_pred ccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccc
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKI 360 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~ 360 (621)
...|+ +++++|+ +|+|+++++|..+++++.++ ++++|.||++||+|+|+++++++. .+. +.+....
T Consensus 153 ~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~---~~~~~~~- 225 (382)
T 4hvk_A 153 TIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQ---PVILGGG- 225 (382)
T ss_dssp BBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCC---CSSCSSC-
T ss_pred eeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcC---cccccCC-
Confidence 99985 4678999 99999999999999988664 999999999899999999999875 221 2221111
Q ss_pred cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 361 NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 361 ~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
.......+|++...+.++.++++++.+ +++++.++.+++++++++.|++++|+...
T Consensus 226 -~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 281 (382)
T 4hvk_A 226 -QENGLRSGSENVPSIVGFGKAAEITAM--EWREEAERLRRLRDRIIDNVLKIEESYLN 281 (382)
T ss_dssp -TGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSTTEEEC
T ss_pred -CcCccccCCcCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 122345689999999999999998764 68999999999999999999988776544
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-23 Score=219.39 Aligned_cols=269 Identities=18% Similarity=0.254 Sum_probs=196.1
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
.+.|++++||.++|++|++++.+.+. .|++..+.+..+++++.+++++|++.+++|+|+ +|||++
T Consensus 33 ~~~~l~~~~~~~~~~~v~~a~~~~~~------------~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t-~g~t~a-- 97 (393)
T 1vjo_A 33 PSRLLLGPGPSNAHPSVLQAMNVSPV------------GHLDPAFLALMDEIQSLLRYVWQTENPLTIAVS-GTGTAA-- 97 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHHSSCCC------------CTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEES-SCHHHH--
T ss_pred ccceeccCCCCCCCHHHHHHHhcccc------------cccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-CchHHH--
Confidence 46899999999999999999887641 255666788999999999999999654368876 678883
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+++ ++..++.+|+++.+..+++++..+...++..|...+..+..
T Consensus 98 ---l~~--------------------------~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~------- 141 (393)
T 1vjo_A 98 ---MEA--------------------------TIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKP------- 141 (393)
T ss_dssp ---HHH--------------------------HHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred ---HHH--------------------------HHHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecC-------
Confidence 332 34445567777777777777755667777778643332210
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEecccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDNETVDGV 288 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thnET~tGv 288 (621)
+...++++++ +. .+++ ++++|.+++.+|.+|.
T Consensus 142 -------------------------~~~~~d~~~l---------------------~~-~l~~~~~~~v~~~~~~nptG~ 174 (393)
T 1vjo_A 142 -------------------------WGEVFSLEEL---------------------RT-ALETHRPAILALVHAETSTGA 174 (393)
T ss_dssp -------------------------TTCCCCHHHH---------------------HH-HHHHHCCSEEEEESEETTTTE
T ss_pred -------------------------CCCCCCHHHH---------------------HH-HHhhCCceEEEEeccCCCcce
Confidence 0000112221 00 1233 6889999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCC---C-Ccee
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPI---T-PTVF 356 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~---~-P~~l 356 (621)
..|+ +++++|+++|+|.++++|..++++++++ ++++|.||+++ |.|+|++++++++++++... . +.++
T Consensus 175 ~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1vjo_A 175 RQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYL 254 (393)
T ss_dssp ECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred eccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceec
Confidence 9885 4567899999999999999999998775 88999999995 77999999999998877432 1 1111
Q ss_pred ecc---ccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 357 HFK---INADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 357 d~~---~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+.. .+....... +|+|...++++.++++++.+. |++++.++.+++++++++.|+++ |+..
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 318 (393)
T 1vjo_A 255 DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE-GLANCWQRHQKNVEYLWERLEDI-GLSL 318 (393)
T ss_dssp CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred CcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence 110 001122333 399999999999999998777 89999999999999999999987 4543
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=214.09 Aligned_cols=277 Identities=10% Similarity=0.045 Sum_probs=194.9
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
.+|++++++++.|++|++++.+.+.++.....+ ....+....+.++++|+.+++++|++.+ +|+|+ +|+|+
T Consensus 27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~---- 97 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVATTVSTAFRRSGASTVG---AHPSARRSAAVLDAAREAVADLVNADPG-GVVLG-ADRAV---- 97 (406)
T ss_dssp CEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCS---SSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SCHHH----
T ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCC---ccHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CChHH----
Confidence 689999999999999999999998654322211 1113445678899999999999999643 68886 67888
Q ss_pred HHHHHhhhcc--CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 131 VAMNLISSSM--NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 131 ~alNlla~~~--~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
+++++...+ .+++||+|++... .|.+ .-..+...+++.|...+..+..
T Consensus 98 -al~~~~~~l~~~~~~gd~vi~~~~----~~~~-------------------~~~~~~~~~~~~g~~v~~v~~~------ 147 (406)
T 3cai_A 98 -LLSLLAEASSSRAGLGYEVIVSRL----DDEA-------------------NIAPWLRAAHRYGAKVKWAEVD------ 147 (406)
T ss_dssp -HHHHHHHHTGGGGBTTCEEEEETT----SCGG-------------------GTHHHHHHHHHHBCEEEEECCC------
T ss_pred -HHHHHHHHHhhccCCCCEEEEcCC----ccHH-------------------HHHHHHHHHHhcCCeEEEEecC------
Confidence 566555444 3667777777643 1110 0122334455567543322210
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEecccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNETVD 286 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnET~t 286 (621)
+.+ +.+ +.+.+ .+++++++|.+++..|.|
T Consensus 148 ----~~~--------------------------------------------~~~-d~~~l~~~l~~~~~~v~~~~~~npt 178 (406)
T 3cai_A 148 ----IET--------------------------------------------GEL-PTWQWESLISKSTRLVAVNSASGTL 178 (406)
T ss_dssp ----TTT--------------------------------------------CCC-CGGGHHHHCCTTEEEEEEESBCTTT
T ss_pred ----ccc--------------------------------------------CCc-CHHHHHHHhCCCceEEEEeCCcCCc
Confidence 000 000 11111 256789999999999999
Q ss_pred cccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccE-EEEEchhHHhhhCCCCCceeec
Q psy8733 287 GVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGIT-VVIVREDLLEYALPITPTVFHF 358 (621)
Q Consensus 287 Gv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg-~livr~~ll~~~~~~~P~~ld~ 358 (621)
|...|+ +++++|+++|+|++++.|..++++.+++ ++++|.||++||. +| ++++++++++++.+... .+
T Consensus 179 G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~~~~~~~~l~~~~~---~~ 254 (406)
T 3cai_A 179 GGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSVMNSFGSVST---NP 254 (406)
T ss_dssp CBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS-CEEEEESCHHHHHTSCCCCS---CT
T ss_pred cccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC-cCeEEEEehHHHhhcCCccc---CC
Confidence 999996 4568899999999999999999887765 8899999999975 99 99999999887654321 11
Q ss_pred cccccCCCccCCchHHHHHHHHHHHHHHHhhC-------------CHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQG-------------GLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 359 ~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~g-------------Gl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
..........+|++...++++.++++++.+.| +++.+.++.+++++++++.|++++|+...
T Consensus 255 ~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 328 (406)
T 3cai_A 255 YATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLI 328 (406)
T ss_dssp TCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEC
T ss_pred CCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Confidence 11111123367999999999999999998874 27899999999999999999988766443
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=212.77 Aligned_cols=278 Identities=17% Similarity=0.166 Sum_probs=194.0
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
..+|++.+++.+.|++|++++.+.+.++.... +...|. +....+.++++|+.++++++.++..+|+|+ +|||+
T Consensus 23 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~-~g~t~-- 96 (406)
T 1kmj_A 23 PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAV---HRGIHTLSAQATEKMENVRKRASLFINARSAEELVFV-RGTTE-- 96 (406)
T ss_dssp ECEECCTTTCCCCCHHHHHHHHHHHHHTCCCC---SSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEE-SSHHH--
T ss_pred ceEEecCCccCCCCHHHHHHHHHHHHhhcCCC---CCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEe-CChhH--
Confidence 36899999999999999999999987643211 101121 224567889999999999999333468887 67888
Q ss_pred hHHHHHHhhhccC---CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH--HHHHHHHHhCCceeeecccc
Q psy8733 129 AAVAMNLISSSMN---VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK--KAAAEAEKYGKVNLVIPKVS 203 (621)
Q Consensus 129 ~a~alNlla~~~~---~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~--~~~~~a~~~G~~~~~~~~~~ 203 (621)
+++++...+. +++||+|++.. +++++. .|...++..|...+..+..
T Consensus 97 ---a~~~~~~~~~~~~~~~gd~vl~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~- 147 (406)
T 1kmj_A 97 ---GINLVANSWGNSNVRAGDNIIISQ-------------------------MEHHANIVPWQMLCARVGAELRVIPLN- 147 (406)
T ss_dssp ---HHHHHHHHTHHHHCCTTCEEEEET-------------------------TCCGGGTHHHHHHHHHHTCEEEEECBC-
T ss_pred ---HHHHHHHHhhhhcCCCCCEEEEec-------------------------ccchHHHHHHHHHHHhCCCEEEEEecC-
Confidence 4554443332 44555555543 333332 2445566677643322210
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEec
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCD 281 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~th 281 (621)
. .| .+ +.+.+ .+++++++|.+++
T Consensus 148 ----------~-------------------~~--~~------------------------d~~~l~~~l~~~~~~v~~~~ 172 (406)
T 1kmj_A 148 ----------P-------------------DG--TL------------------------QLETLPTLFDEKTRLLAITH 172 (406)
T ss_dssp ----------T-------------------TS--CB------------------------CGGGHHHHCCTTEEEEEEES
T ss_pred ----------C-------------------CC--Cc------------------------CHHHHHHHhccCCeEEEEeC
Confidence 0 00 01 11111 2456899999999
Q ss_pred ccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCc
Q psy8733 282 NETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPT 354 (621)
Q Consensus 282 nET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~ 354 (621)
..|.+|...|+ +++++|+++|+|.+++.|..++++++++ ++++|.||.+||+|+|++++++++.+++.+....
T Consensus 173 ~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~~~~~~~ 252 (406)
T 1kmj_A 173 VSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGG 252 (406)
T ss_dssp BCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHCCCSSCS
T ss_pred CCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeHHHHhhcCCcccC
Confidence 99999999995 4568999999999999999988887765 8889999999999999999999999887653321
Q ss_pred --eeec---c---cccc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 355 --VFHF---K---INAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 355 --~ld~---~---~~~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+.+. . .... .....+|+++..++++.++++++.+. |++.+.++.+++++++++.|++++|+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 325 (406)
T 1kmj_A 253 GSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSAL-GLNNIAEYEQNLMHYALSQLESVPDLTL 325 (406)
T ss_dssp TTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred CCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 1100 0 0001 11235789999999999999999877 8999999999999999999998865543
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-22 Score=210.99 Aligned_cols=282 Identities=16% Similarity=0.111 Sum_probs=196.8
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
..+|++.+++.+.|++|++++.+.+.+....+.. .+++.+.+...+.+.|+.+++++|++.+ +|+|+ +|||+
T Consensus 16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~y~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~--- 87 (390)
T 1elu_A 16 NKTYFNFGGQGILPTVALEAITAMYGYLQENGPF---SIAANQHIQQLIAQLRQALAETFNVDPN-TITIT-DNVTT--- 87 (390)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSS---SHHHHHHHHHHHHHHHHHHHHHTTSCGG-GEEEE-SSHHH---
T ss_pred CeEEecCCccCCCCHHHHHHHHHHHHHHhccCCc---chhhHHHHHHHHHHHHHHHHHHcCCCHH-HEEEe-CChHH---
Confidence 4689999999999999999999988664321110 1113445567899999999999998654 68876 67888
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHH--HHHHHHHhCCceeeecccccccc
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKK--AAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~--~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
+++++...+.+++||+|++.. .++.+.. |...++..|...+..+..
T Consensus 88 --a~~~~~~~~~~~~gd~vl~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~~v~~~----- 135 (390)
T 1elu_A 88 --GCDIVLWGLDWHQGDEILLTD-------------------------CEHPGIIAIVQAIAARFGITYRFFPVA----- 135 (390)
T ss_dssp --HHHHHHHHSCCCTTCEEEEET-------------------------TCCHHHHHHHHHHHHHHCCEEEEECCG-----
T ss_pred --HHHHHHhCCCCCCCCEEEEec-------------------------CcccHHHHHHHHHHHHhCcEEEEEcCC-----
Confidence 455544444445555555543 3334332 444566677643322210
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
.++....+++++ + -.+++++++|.+++.+|.+|
T Consensus 136 -------------------------~~~~~~~d~~~l---------------------~-~~i~~~~~~v~~~~~~nptG 168 (390)
T 1elu_A 136 -------------------------ATLNQGDAAAVL---------------------A-NHLGPKTRLVILSHLLWNTG 168 (390)
T ss_dssp -------------------------GGSSSSCHHHHH---------------------H-TTCCTTEEEEEEESBCTTTC
T ss_pred -------------------------CCCCccchHHHH---------------------H-HhcCCCceEEEEeccccCCc
Confidence 000001222221 0 12456899999999999999
Q ss_pred ccccc-----ccc----cCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCCce
Q psy8733 288 VEFNY-----IPD----SQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTV 355 (621)
Q Consensus 288 v~~p~-----i~~----~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~~ 355 (621)
...|+ +++ ++|+++|+|.++++|..++++++++ +++.|.||++ ||.|+|++++++++++++.+....+
T Consensus 169 ~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~ 248 (390)
T 1elu_A 169 QVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGW 248 (390)
T ss_dssp CBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCT
T ss_pred eecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCccccC
Confidence 99995 567 8999999999999999999987765 8999999966 6999999999999988775532110
Q ss_pred -----------eeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 356 -----------FHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 356 -----------ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+++.... .....+|++...++++.++++++.+.|.++.+.++.+++++++++.|++++|+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 322 (390)
T 1elu_A 249 RSITYGAKGEPTGWAEGG-KRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCL 322 (390)
T ss_dssp TTEEECTTSCEEEECSGG-GGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred CcccccccCcccccccch-HhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence 0111000 12235799999999999999999887449999999999999999999988666443
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=212.32 Aligned_cols=269 Identities=12% Similarity=0.059 Sum_probs=183.3
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+|++++++++.|++|++++.+.+.+..+...+ .++.+..+.+.+++.|+.+++++|++.+ +|+|+ +|||++
T Consensus 2 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~a---- 72 (382)
T 4eb5_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSS---VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFT-SGATEA---- 72 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC---SSHHHHHHHHHHHHHHHHHHHHHTCTTE-EEEEE-SSHHHH----
T ss_pred eeeccCCCCCCCHHHHHHHHHHHHhccCCCCC---CcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEc-CchHHH----
Confidence 69999999999999999999998653322211 2334566788999999999999999643 78876 678983
Q ss_pred HHHHhhhccC---CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH-HHHHHHHHhCCceeeecccccccc
Q psy8733 132 AMNLISSSMN---VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK-KAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 132 alNlla~~~~---~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~-~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
++++...+. .++||+|++. ..++.+. .....+++.|...+..+..
T Consensus 73 -~~~~~~~l~~~~~~~gd~Vl~~-------------------------~~~~~~~~~~~~~~~~~g~~~~~v~~~----- 121 (382)
T 4eb5_A 73 -NNLAIIGYAMRNARKGKHILVS-------------------------AVEHMSVINPAKFLQKQGFEVEYIPVG----- 121 (382)
T ss_dssp -HHHHHHHHHHHHGGGCCEEEEE-------------------------TTCCHHHHHHHHHHTTTTCEEEEECBC-----
T ss_pred -HHHHHHHHHhhccCCCCEEEEC-------------------------CCcchHHHHHHHHHHhCCcEEEEeccC-----
Confidence 443222221 1344444443 3333322 1222233356532222110
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
+...++++++ + -.+++++++|.+++..|.||
T Consensus 122 ---------------------------~~~~~d~~~l---------------------~-~~i~~~~~~v~~~~~~nptG 152 (382)
T 4eb5_A 122 ---------------------------KYGEVDVSFI---------------------D-QKLRDDTILVSVQHANNEIG 152 (382)
T ss_dssp ---------------------------TTSCBCHHHH---------------------H-HHCCTTEEEEECCSBCTTTC
T ss_pred ---------------------------CCCccCHHHH---------------------H-HHhcCCCeEEEEeccCCCcc
Confidence 0000112221 1 12456789999999999999
Q ss_pred ccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccc
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKI 360 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~ 360 (621)
...|+ +++++|++ |+|.++++|..+++++.++ ++++|.||++||+|+|+++++++. ++. +.+..+.
T Consensus 153 ~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~--~l~---~~~~~~~- 225 (382)
T 4eb5_A 153 TIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQ---PVILGGG- 225 (382)
T ss_dssp BBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTC--CCC---CSSCSSC-
T ss_pred ccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEcccc--ccC---ceecCCC-
Confidence 99985 45789999 9999999999988887654 899999999999999999999874 111 1111110
Q ss_pred cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 361 NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 361 ~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
.......+|++...++++.++++++.+ |++.+.++.+++++++++.|++++|+...
T Consensus 226 -~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 281 (382)
T 4eb5_A 226 -QENGLRSGSENVPSIVGFGKAAEITAM--EWREEAERLRRLRDRIIDNVLKIEESYLN 281 (382)
T ss_dssp -TGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSTTEEEC
T ss_pred -ccccccCCCccHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhCCCeEEe
Confidence 112244678999999999999998876 58999999999999999999988666543
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-22 Score=210.55 Aligned_cols=300 Identities=15% Similarity=0.142 Sum_probs=202.2
Q ss_pred cchhccccccccchhhhhhccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCC-cccccccccHHHHHHHHHHHHH
Q psy8733 26 YLGNIIRNTYLDSRIHTTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGI-SVMEMSHRSADYTKINNDTQAA 104 (621)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~-sv~e~shrs~~f~~i~~~ar~~ 104 (621)
.+...+|..|+. .... +.+. ..+++.++.|.+.|++|++++.+.+.++..... + ..+.+..+.+.++++|+.
T Consensus 8 ~~~~~~r~~f~~--~~~~-~~g~-~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~l~~~ 80 (420)
T 1t3i_A 8 SLAATVRQDFPI--LNQE-INGH-PLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRG---AHQLSVRATDAYEAVRNK 80 (420)
T ss_dssp CHHHHHGGGCGG--GSCE-ETTE-ECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--C---CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCc--cccc-cCCC-ceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcc---cchHHHHHHHHHHHHHHH
Confidence 345566766651 1110 1111 357899999999999999999999876532210 1 122233456789999999
Q ss_pred HHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccC---CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChH
Q psy8733 105 LRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMN---VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSW 181 (621)
Q Consensus 105 La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~---~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~ 181 (621)
++++++.++..+|+|+ +|||+ +++++...++ +++||+|++.. .++.
T Consensus 81 la~~~~~~~~~~v~~~-~g~t~-----a~~~~~~~~~~~~~~~gd~Vl~~~-------------------------~~~~ 129 (420)
T 1t3i_A 81 VAKFINARSPREIVYT-RNATE-----AINLVAYSWGMNNLKAGDEIITTV-------------------------MEHH 129 (420)
T ss_dssp HHHHTTCSCGGGEEEE-SSHHH-----HHHHHHHHTHHHHCCTTCEEEEET-------------------------TCCG
T ss_pred HHHHcCCCCCCeEEEc-CChHH-----HHHHHHHHhhhcccCCCCEEEECc-------------------------chhH
Confidence 9999999433468887 67888 4444433332 44555555443 3333
Q ss_pred HH--HHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCc
Q psy8733 182 SK--KAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKY 259 (621)
Q Consensus 182 ~~--~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~ 259 (621)
+. .|...++..|...+..+.. ..| .++++++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~v~~~------------------------------~~~--~~d~~~l--------------- 162 (420)
T 1t3i_A 130 SNLVPWQMVAAKTGAVLKFVQLD------------------------------EQE--SFDLEHF--------------- 162 (420)
T ss_dssp GGTHHHHHHHHHHCCEEEEECBC------------------------------TTS--SBCHHHH---------------
T ss_pred HHHHHHHHHHHhcCcEEEEeccC------------------------------CCC--CcCHHHH---------------
Confidence 32 1445566777643322210 000 0112221
Q ss_pred cCCCCccccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCC
Q psy8733 260 VSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 260 ~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP 332 (621)
+ -.+++++++|.+++..|.+|...|+ +++++|+++|+|.++++|..++++.+++ ++++|.||.+||
T Consensus 163 ------~-~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~ 235 (420)
T 1t3i_A 163 ------K-TLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAP 235 (420)
T ss_dssp ------H-HHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSC
T ss_pred ------H-HhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCC
Confidence 0 1245689999999999999999985 4568999999999999999988887765 899999998899
Q ss_pred CccEEEEEchhHHhhhCCCCCc--eeec-----cccccC--CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy8733 333 AGITVVIVREDLLEYALPITPT--VFHF-----KINADN--NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKS 403 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~--~ld~-----~~~~~~--~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la 403 (621)
+|+|++++++++++++.+.... +.+. ..+... ....+|+++..++++.++++++.+. |++.+.++.++++
T Consensus 236 ~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~ 314 (420)
T 1t3i_A 236 TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDL-GMENIHNYEVELT 314 (420)
T ss_dssp TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Confidence 9999999999999887653221 1000 000011 1224799999999999999999887 8999999999999
Q ss_pred HHHHHHHHccCCccc
Q psy8733 404 VLLYQEIDNSDKFYE 418 (621)
Q Consensus 404 ~~L~e~L~~~~g~~~ 418 (621)
+++++.|++++|+..
T Consensus 315 ~~l~~~L~~~~g~~~ 329 (420)
T 1t3i_A 315 HYLWQGLGQIPQLRL 329 (420)
T ss_dssp HHHHHHHHTCTTEEE
T ss_pred HHHHHHHHhCCCeEE
Confidence 999999998866654
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-22 Score=209.58 Aligned_cols=275 Identities=12% Similarity=0.145 Sum_probs=188.3
Q ss_pred ccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCC
Q psy8733 45 MSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGG 123 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gg 123 (621)
+|.....+|+++.++++.|++|++++.+.+.+..+... .+++ +..+.+.++++|+.+++++|++.+ +|+|+ +|
T Consensus 23 f~~~~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g 96 (416)
T 1qz9_A 23 FALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGL----IRSWNSAGWRDLSERLGNRLATLIGARDG-EVVVT-DT 96 (416)
T ss_dssp BCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCG----GGHHHHTSGGGHHHHHHHHHHTTTTCCTT-SEEEC-SC
T ss_pred CCCCCCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccC----ccccchhhHHHHHHHHHHHHHHHcCCCcc-cEEEe-CC
Confidence 33333578999999999999999999998864211110 1111 112447788999999999999643 68886 67
Q ss_pred cchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhh------CCCCcEEEEEcChHHH---HHHHHHHHh--
Q psy8733 124 GTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI------GRTGKADYVVTGSWSK---KAAAEAEKY-- 192 (621)
Q Consensus 124 gT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~------~~g~~~~~v~tG~~~~---~~~~~a~~~-- 192 (621)
+|+++++ ++..++ .+|+++.++..+.|+. .+...++..
T Consensus 97 ~t~al~~-------------------------------al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~ 145 (416)
T 1qz9_A 97 TSINLFK-------------------------------VLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQ 145 (416)
T ss_dssp HHHHHHH-------------------------------HHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCS
T ss_pred hhHHHHH-------------------------------HHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcC
Confidence 8883332 122222 4566555555555653 222344444
Q ss_pred CCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC
Q psy8733 193 GKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP 272 (621)
Q Consensus 193 G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~ 272 (621)
|...+..+ . +++ .+. .+++
T Consensus 146 g~~~~~v~--------------------------------~-------~~~---------------------l~~-~i~~ 164 (416)
T 1qz9_A 146 GYTLRLVD--------------------------------S-------PEE---------------------LPQ-AIDQ 164 (416)
T ss_dssp SCEEEEES--------------------------------S-------GGG---------------------HHH-HCST
T ss_pred CceEEEeC--------------------------------c-------HHH---------------------HHH-HhCC
Confidence 65322111 0 011 011 2456
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCcc-EEEEEchh
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGI-TVVIVRED 343 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Gl-g~livr~~ 343 (621)
++++|.+++..|.||...|+ +++++|+++|+|+++++|..++++++++ ++++|.||++ |++|+ |+++++++
T Consensus 165 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~ 244 (416)
T 1qz9_A 165 DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQ 244 (416)
T ss_dssp TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTT
T ss_pred CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHH
Confidence 79999999999999999985 4567899999999999999998887764 8999999998 57777 99999999
Q ss_pred HHhhhCCCCCcee------eccccc-----cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 344 LLEYALPITPTVF------HFKINA-----DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 344 ll~~~~~~~P~~l------d~~~~~-----~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+++++.+....+. ++.... .....++|+++..++++.++++++.+. |++++.++.+++++++++.|++
T Consensus 245 ~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 323 (416)
T 1qz9_A 245 LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQT-DMASLRRKSLALTDLFIELVEQ 323 (416)
T ss_dssp TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHh
Confidence 8877655322210 100000 112345799999999999999998766 8999999999999999999988
Q ss_pred c-C--Cccc
Q psy8733 413 S-D--KFYE 418 (621)
Q Consensus 413 ~-~--g~~~ 418 (621)
+ + |+..
T Consensus 324 ~~~~~g~~~ 332 (416)
T 1qz9_A 324 RCAAHELTL 332 (416)
T ss_dssp HHTTSCCEE
T ss_pred hccCCCeEE
Confidence 5 4 4543
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=197.48 Aligned_cols=268 Identities=13% Similarity=0.040 Sum_probs=182.5
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
+|++++++++.|++|++++.+.+.+....+.+ .++++..+.+.+.+.|+.+++++|++.+ +|+|+ +|||++
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~a---- 73 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS---AHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFT-SCATES---- 73 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC---SSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEE-SCHHHH----
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEE-CCHHHH----
Confidence 79999999999999999999998652212111 2344556778899999999999998754 68876 678983
Q ss_pred HHHHhhhccC---CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH-HHHHHHHHhCCceeeecccccccc
Q psy8733 132 AMNLISSSMN---VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK-KAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 132 alNlla~~~~---~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~-~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
++++...+. +++||+|++.. .++.+. .....++..|...+..+..
T Consensus 74 -~~~~~~~~~~~~~~~gd~vl~~~-------------------------~~~~~~~~~~~~~~~~g~~~~~v~~~----- 122 (384)
T 1eg5_A 74 -INWILKTVAETFEKRKRTIITTP-------------------------IEHKAVLETMKYLSMKGFKVKYVPVD----- 122 (384)
T ss_dssp -HHHHHHHHHHHTTTTCCEEEECT-------------------------TSCHHHHHHHHHHHHTTCEEEECCBC-----
T ss_pred -HHHHHHhhhhhccCCCCEEEECC-------------------------CCchHHHHHHHHHHhcCCEEEEEccC-----
Confidence 444332222 24555555443 222322 1222335556543222110
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
..| .++++++ + -.+++++++|.+++..|.+|
T Consensus 123 -------------------------~~~--~~d~~~l---------------------~-~~i~~~~~~v~~~~~~nptG 153 (384)
T 1eg5_A 123 -------------------------SRG--VVKLEEL---------------------E-KLVDEDTFLVSIMAANNEVG 153 (384)
T ss_dssp -------------------------TTS--CBCHHHH---------------------H-HHCCTTEEEEEEESBCTTTC
T ss_pred -------------------------CCC--ccCHHHH---------------------H-HHhCCCCeEEEEECCCCCcc
Confidence 000 0112221 0 02456799999999999999
Q ss_pred ccccc-----ccccCC--CcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeec
Q psy8733 288 VEFNY-----IPDSQG--IPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHF 358 (621)
Q Consensus 288 v~~p~-----i~~~~g--~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~ 358 (621)
...|+ +++++| +++|+|.++++|..++++++++ ++++|.||++||+|+|++++++++ ++. +.+..+
T Consensus 154 ~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~--~~~---~~~~~~ 228 (384)
T 1eg5_A 154 TIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIR---PLIHGG 228 (384)
T ss_dssp BBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCC---CSBCSS
T ss_pred cccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCC--ccc---cccccC
Confidence 99995 456778 9999999999999988888764 999999999999999999999875 111 111111
Q ss_pred cccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 359 ~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
. .......+|++...++++.++|+.+.+ +++++.++.+++++++++.|++ .|+..
T Consensus 229 ~--~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~~-~g~~~ 283 (384)
T 1eg5_A 229 G--QERGLRSGTQNVPGIVGAARAMEIAVE--ELSEAAKHMEKLRSKLVSGLMN-LGAHI 283 (384)
T ss_dssp C--TTTTTBCSCCCHHHHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHT-TTCEE
T ss_pred c--ccccccCCCCChHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHhCC-CCeEE
Confidence 1 112234568999999999999998754 5899999999999999999988 44543
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=206.33 Aligned_cols=281 Identities=12% Similarity=0.050 Sum_probs=190.2
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+.+|++.+++++.|++|++++.+.+.+....+..-...++.+....+.++++++.++++++++.+ +|+|+ +|||++++
T Consensus 22 ~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~ggt~a~~ 99 (423)
T 3lvm_A 22 LPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFT-SGATESDN 99 (423)
T ss_dssp SSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SSHHHHHH
T ss_pred CCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-eEEEe-CChHHHHH
Confidence 57999999999999999999998875111111110002333456678899999999999999754 68886 67888433
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH-HHHHHHHHhCCceeeeccccccccc
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK-KAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
+ +...+ ...+.++|+++.+...++.+. .....+++.|...+..+..
T Consensus 100 ~-----a~~~l----------------------~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------ 146 (423)
T 3lvm_A 100 L-----AIKGA----------------------ANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ------ 146 (423)
T ss_dssp H-----HHHHH----------------------HHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC------
T ss_pred H-----HHHHH----------------------HHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccC------
Confidence 3 21111 000112345444433333332 1222335556543322210
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV 288 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv 288 (621)
+...++++++ + -.+++++++|.+++..|.+|.
T Consensus 147 --------------------------~~~~~d~~~l---------------------~-~~i~~~~~~v~~~~~~nptG~ 178 (423)
T 3lvm_A 147 --------------------------RNGIIDLKEL---------------------E-AAMRDDTILVSIMHVNNEIGV 178 (423)
T ss_dssp --------------------------TTSCCCHHHH---------------------H-HHCCTTEEEEECCSBCTTTCB
T ss_pred --------------------------CCCccCHHHH---------------------H-HhcCCCcEEEEEeCCCCCCcc
Confidence 0000111221 0 125568999999999999999
Q ss_pred cccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecccc
Q psy8733 289 EFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKIN 361 (621)
Q Consensus 289 ~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~ 361 (621)
..|+ +++++|+++|+|.+++.+..++++.+++ ++++|.||++||+|+|+++++++..+++.+... .. .
T Consensus 179 ~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~---~~--~ 253 (423)
T 3lvm_A 179 VQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMH---GG--G 253 (423)
T ss_dssp BCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSC---SS--C
T ss_pred ccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCcccc---CC--c
Confidence 9995 4568899999999999999999998875 999999998899999999999887655433211 11 1
Q ss_pred ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCc
Q psy8733 362 ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP 420 (621)
Q Consensus 362 ~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~ 420 (621)
.......+|++...++++.++++++.+. ++.+.++.+++++++++.|++++|+....
T Consensus 254 ~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 310 (423)
T 3lvm_A 254 HERGMRSGTLPVHQIVGMGEAYRIAKEE--MATEMERLRGLRNRLWNGIKDIEEVYLNG 310 (423)
T ss_dssp TTTTTCCSCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSTTEEEES
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 1223456799999999999999998774 89999999999999999999887775543
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=219.01 Aligned_cols=275 Identities=15% Similarity=0.178 Sum_probs=191.5
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
..+|+++.++++.|+.|.+++.+.+..|...+...+..++ ..+.+..+++++.+++++|++.+ +|+|+ +|+|+
T Consensus 67 ~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~g~~~~-~v~~t-~g~t~--- 139 (465)
T 3e9k_A 67 NAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGK--RPWITGDESIVGLMKDIVGANEK-EIALM-NALTV--- 139 (465)
T ss_dssp BCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSS--SCGGGTTHHHHGGGHHHHTCCGG-GEEEC-SCHHH---
T ss_pred CeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCC--ccHHHhHHHHHHHHHHHcCCCcC-CEEEE-CCHHH---
Confidence 5689999999999999999999988777655443222111 12445667889999999999754 78886 67888
Q ss_pred HHHHHHhhhcc--CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH--HHHHHHHHhCCcee-----eec
Q psy8733 130 AVAMNLISSSM--NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK--KAAAEAEKYGKVNL-----VIP 200 (621)
Q Consensus 130 a~alNlla~~~--~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~--~~~~~a~~~G~~~~-----~~~ 200 (621)
+++++..++ ..+.+|+|++... ++.+. .|...++..|.... +.+
T Consensus 140 --al~~~~~~~~~~~~~~~~Vl~~~~-------------------------~~~s~~~~~~~~~~~~G~~~~~~~v~~~~ 192 (465)
T 3e9k_A 140 --NLHLLMLSFFKPTPKRYKILLEAK-------------------------AFPSDHYAIESQLQLHGLNIEESMRMIKP 192 (465)
T ss_dssp --HHHHHHHHHCCCCSSSCEEEEETT-------------------------CCHHHHHHHHHHHHHTTCCHHHHEEEECC
T ss_pred --HHHHHHHHhccccCCCCEEEEcCC-------------------------cCCchHHHHHHHHHHcCCcceeeeEEEec
Confidence 566544332 2233444555443 22221 23445666775321 100
Q ss_pred ccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCC---CCCceEE
Q psy8733 201 KVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNR---DPEASYL 277 (621)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i---~~~t~~V 277 (621)
. +..+ .+++|++ +. .+ .+++++|
T Consensus 193 ~------------------------------~~~~--~~d~~~l---------------------~~-~i~~~~~~~~lv 218 (465)
T 3e9k_A 193 R------------------------------EGEE--TLRIEDI---------------------LE-VIEKEGDSIAVI 218 (465)
T ss_dssp C------------------------------TTCS--SCCHHHH---------------------HH-HHHHHGGGEEEE
T ss_pred C------------------------------CCCC--ccCHHHH---------------------HH-HHHhcCCCeEEE
Confidence 0 0000 0111221 00 12 2579999
Q ss_pred EEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc--CCCccEEEEEchhHHhhh
Q psy8733 278 YYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI--GPAGITVVIVREDLLEYA 348 (621)
Q Consensus 278 ~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l--GP~Glg~livr~~ll~~~ 348 (621)
.+++..|.||...|+ +++++|+++++|+++++|..|+++++++ ++++|+||++ ||.|+|++++++++.+.+
T Consensus 219 ~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~ 298 (465)
T 3e9k_A 219 LFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTI 298 (465)
T ss_dssp EEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTS
T ss_pred EEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhc
Confidence 999999999999996 4568999999999999999999998876 8999999999 588899999999998776
Q ss_pred CCCCCceeec--------cc---ccc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 349 LPITPTVFHF--------KI---NAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 349 ~~~~P~~ld~--------~~---~~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.+....+... .. ... .+...+|||+..++++.++++++.+. |++++.++.+++++++++.|+++
T Consensus 299 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~ 375 (465)
T 3e9k_A 299 KPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQA-TMKALRKKSVLLTGYLEYLIKHN 375 (465)
T ss_dssp CCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHhh
Confidence 6543321100 00 000 11234699999999999999999998 89999999999999999999885
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=205.05 Aligned_cols=276 Identities=12% Similarity=0.074 Sum_probs=186.9
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+.+|++.+++++.|++|++++.+.+.+....+.+ .+..+....+.++++|+.+++++|++.+ +|+|+ +|||+
T Consensus 20 ~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~g~t~--- 91 (400)
T 3vax_A 20 HMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGS---RHEYGIRAKRGVERAREYLASTVSAEPD-ELIFT-SGATE--- 91 (400)
T ss_dssp --CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSC---HHHHHHHHHHHHHHHHHHHHHHTTCCGG-GEEEE-SCHHH---
T ss_pred CcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcc---cchhHHHHHHHHHHHHHHHHHHcCCCCC-cEEEe-CCHHH---
Confidence 5799999999999999999999998764333222 1222445678899999999999999743 68886 67888
Q ss_pred HHHHHHhhhccC---CCCCc-eeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH-HHHHHHHHhCCceeeeccccc
Q psy8733 130 AVAMNLISSSMN---VPNNY-KILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK-KAAAEAEKYGKVNLVIPKVSK 204 (621)
Q Consensus 130 a~alNlla~~~~---~~~gd-~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~-~~~~~a~~~G~~~~~~~~~~~ 204 (621)
+++++...+. .++|| +|++... .+.+- .....+++.|...+..+..
T Consensus 92 --al~~~~~~l~~~~~~~gd~~Vl~~~~-------------------------~~~~~~~~~~~~~~~g~~~~~v~~~-- 142 (400)
T 3vax_A 92 --SNNIALLGLAPYGERTGRRHIITSAI-------------------------EHKAVLEPLEHLAGRGFEVDFLTPG-- 142 (400)
T ss_dssp --HHHHHHHTTHHHHHHHTCCEEEEETT-------------------------SCHHHHHHHHHHHTTTCEEEEECCC--
T ss_pred --HHHHHHHHHHHhhccCCCCEEEECcc-------------------------ccHhHHHHHHHHHhcCCeEEEEccC--
Confidence 4544433331 14555 5555432 11111 1112233456533222210
Q ss_pred ccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccc
Q psy8733 205 YVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 284 (621)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET 284 (621)
+...++++++ +-.+++++++|.+++..|
T Consensus 143 ------------------------------~~~~~d~~~l----------------------~~~i~~~~~~v~~~~~~n 170 (400)
T 3vax_A 143 ------------------------------PSGRISVEGV----------------------MERLRPDTLLVSLMHVNN 170 (400)
T ss_dssp ------------------------------TTCCCCHHHH----------------------HTTCCTTEEEEECCSBCT
T ss_pred ------------------------------CCCCcCHHHH----------------------HHhcCCCceEEEEECCCC
Confidence 0001112221 013567899999999999
Q ss_pred cccccccc-----ccccCCCcEEEecccccCCCcccccc-cceEEeccccccCCCccEEEE-EchhHHhhh-CCCCCcee
Q psy8733 285 VDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSK-FGVIIAGAQKNIGPAGITVVI-VREDLLEYA-LPITPTVF 356 (621)
Q Consensus 285 ~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~-~gvl~asaqK~lGP~Glg~li-vr~~ll~~~-~~~~P~~l 356 (621)
.+|...|+ +++++|+++|+|.+++++..++++.. .|++++|.||++||+|+|+++ ++++.+.+. ....+.+.
T Consensus 171 ptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~ 250 (400)
T 3vax_A 171 ETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTPIDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMF 250 (400)
T ss_dssp TTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSCCSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSC
T ss_pred CceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhcCcEEEEeHHHhCCCCceEEEEEecchhccccccccCceec
Confidence 99999985 46789999999999999999998877 479999999987999999999 998433211 11112111
Q ss_pred eccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 357 HFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 357 d~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
.. ........+|+++..++++.++++++.+ +++++.++.+++++++++.|+ .+|+...
T Consensus 251 ~~--~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~l~~~L~-~~~~~~~ 308 (400)
T 3vax_A 251 GG--GQERKLRPGTLPVPLIMGLAEAAKIFEA--EHAQWQVAAQDLRSRLLAGLA-STSFQVN 308 (400)
T ss_dssp SS--CTGGGTSCSCCCHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHT-TTTCEEC
T ss_pred CC--CceeeeecCCCCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHhhC-CCCEEEe
Confidence 11 1122345689999999999999998865 699999999999999999998 7666544
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-20 Score=196.82 Aligned_cols=288 Identities=16% Similarity=0.096 Sum_probs=183.3
Q ss_pred ccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Q psy8733 45 MSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGG 124 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~ggg 124 (621)
++.....+||+++++++.|++|++++.+.+.+......+ .+..+..+.+.++++|+.+++++|++.+ +|+|+ +||
T Consensus 13 ~~~~~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~ 87 (432)
T 3a9z_A 13 ESPPNRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSS---SYVAGRKAKDIINTARASLAKMIGGKPQ-DIIFT-SGG 87 (432)
T ss_dssp -----CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTC---SSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SCH
T ss_pred cCCCCCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCcc---CcHHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEe-CCh
Confidence 343335789999999999999999999988653222211 1223456778999999999999999643 68886 678
Q ss_pred chhhhHHHHHHhhhccC-------CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHH---HHHHHHHHhCC
Q psy8733 125 TGMFAAVAMNLISSSMN-------VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSK---KAAAEAEKYGK 194 (621)
Q Consensus 125 T~~~~a~alNlla~~~~-------~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~---~~~~~a~~~G~ 194 (621)
|++ ++++...+. +++||+|++... .| ...+++ ++....+.. .|...+++.|.
T Consensus 88 t~a-----~~~~~~~~~~~~~~~~~~~gd~vl~~~p----~y--------~~~~~i-~~~~~~h~s~~~~~~~~~~~~g~ 149 (432)
T 3a9z_A 88 TES-----NNLVIHSTVRCFHEQQTLQGRTVDQISP----EE--------GTRPHF-ITCTVEHDSIRLPLEHLVEDQVA 149 (432)
T ss_dssp HHH-----HHHHHHHHHHHHHHHHHHC------------------------CCCEE-EEETTCCHHHHHHHHHHHHTTSC
T ss_pred HHH-----HHHHHHHHHhhhhhccccCCcccccccc----cc--------ccCCeE-EEecCcchhHHHHHHHHHHhcCc
Confidence 994 444333321 257888877653 22 111222 223322221 23344455565
Q ss_pred ceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCc
Q psy8733 195 VNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEA 274 (621)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t 274 (621)
..+..+.. + + .+ .++++++ + -.+++++
T Consensus 150 ~v~~v~~~-----------~-~-----------------~~--~~d~~~l---------------------~-~~i~~~~ 176 (432)
T 3a9z_A 150 EVTFVPVS-----------K-V-----------------NG--QVEVEDI---------------------L-AAVRPTT 176 (432)
T ss_dssp EEEEECCC-----------T-T-----------------TS--SCCHHHH---------------------H-HTCCTTE
T ss_pred EEEEEecC-----------c-c-----------------cC--CcCHHHH---------------------H-HhccCCc
Confidence 43322210 0 0 00 0111121 0 1345689
Q ss_pred eEEEEecccccccccccc-----ccccCC----------CcEEEecccccCCCcccccccc--eEEeccccccCCCccEE
Q psy8733 275 SYLYYCDNETVDGVEFNY-----IPDSQG----------IPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITV 337 (621)
Q Consensus 275 ~~V~~thnET~tGv~~p~-----i~~~~g----------~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~ 337 (621)
++|.+++..|.||...|+ ++++++ +++|+|.+++.|..++++.+++ +++.|.||++||. +|+
T Consensus 177 ~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~ 255 (432)
T 3a9z_A 177 CLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGA 255 (432)
T ss_dssp EEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTCCS-CEE
T ss_pred eEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcCCc-ceE
Confidence 999999999999999996 445667 9999999999999988887654 8899999999987 999
Q ss_pred EEEchhH-HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 338 VIVREDL-LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 338 livr~~l-l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++++++. ..++ .|.+++... ......+|++...++++.++++++.+ +++++.++.+++++++++.|++++|+
T Consensus 256 ~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~ 328 (432)
T 3a9z_A 256 LYVRGVGKLTPL---YPMLFGGGQ--ERNFRPGTENTPMIAGLGKAADLVSE--NCETYEAHMRDIRDYLEERLEAEFGK 328 (432)
T ss_dssp EEETTBTTTBCC---CCSCCSSCG--GGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEccccccCCc---CceeecCCc--cccccCCCcCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999876 2222 232222211 12234579999999999999998865 68999999999999999999886444
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-17 Score=171.44 Aligned_cols=269 Identities=15% Similarity=0.092 Sum_probs=170.6
Q ss_pred eccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHH
Q psy8733 54 NFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAM 133 (621)
Q Consensus 54 lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~al 133 (621)
+++.++++.+++|.+++.+.+.+... ..+..+...++.+++++.++++++++.+ +|+|+ +|||++++++..
T Consensus 34 ~~~~~~~~~~~~v~~a~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~la~~~~~~~~-~i~~~-~ggt~a~~~~~~ 104 (397)
T 3f9t_A 34 IFGSMCSNVLPITRKIVDIFLETNLG-------DPGLFKGTKLLEEKAVALLGSLLNNKDA-YGHIV-SGGTEANLMALR 104 (397)
T ss_dssp BCSCSCCCCCTHHHHHHHHHTTCCTT-------SGGGBHHHHHHHHHHHHHHHHHTTCTTC-EEEEE-SCHHHHHHHHHH
T ss_pred eEEEecCCCcHHHHHHHHHHHhhcCC-------CcccChhHHHHHHHHHHHHHHHhCCCCC-CEEEe-cCcHHHHHHHHH
Confidence 56666778888999999998743221 1122346778899999999999999765 78876 678984443111
Q ss_pred HHhhh-------ccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccc
Q psy8733 134 NLISS-------SMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 134 Nlla~-------~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
.+... +.+-.+ |+++.+..+++.+ +...++..|...+..+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~-------------------------gd~vl~~~~~~~~--~~~~~~~~g~~~~~v~~~---- 153 (397)
T 3f9t_A 105 CIKNIWREKRRKGLSKNE-------------------------HPKIIVPITAHFS--FEKGREMMDLEYIYAPIK---- 153 (397)
T ss_dssp HHHHHHHHHHHTTCCCCS-------------------------SCEEEEETTCCTH--HHHHHHHHTCEEEEECBC----
T ss_pred HHHHHHHhhhhhcccCCC-------------------------CeEEEECCcchhH--HHHHHHHcCceeEEEeeC----
Confidence 11000 001112 4444444444443 344556667643322210
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEeccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDNETV 285 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thnET~ 285 (621)
+...++++++ +. .+++ ++++|.+++..|.
T Consensus 154 ----------------------------~~~~~d~~~l---------------------~~-~i~~~~~~~v~~~~~~np 183 (397)
T 3f9t_A 154 ----------------------------EDYTIDEKFV---------------------KD-AVEDYDVDGIIGIAGTTE 183 (397)
T ss_dssp ----------------------------TTSSBCHHHH---------------------HH-HHHHSCCCEEEEEBSCTT
T ss_pred ----------------------------CCCcCCHHHH---------------------HH-HHhhcCCeEEEEECCCCC
Confidence 0000112221 00 1334 7899999999999
Q ss_pred ccccccc-----ccccCCCcEEEecccccCCC--------------cccccc-cceEEeccccccC-CCccEEEEEchhH
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFLSR--------------KFDVSK-FGVIIAGAQKNIG-PAGITVVIVREDL 344 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G~~--------------pIDv~~-~gvl~asaqK~lG-P~Glg~livr~~l 344 (621)
+|...|+ +++++|+++|+|.+++.+.. +++++. .+++++|.||+++ |.++|+++++++.
T Consensus 184 tG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~~g~~~~~~~~ 263 (397)
T 3f9t_A 184 LGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIG 263 (397)
T ss_dssp TCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSSCEEEEESSGG
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCCCceEEEEeCHH
Confidence 9999885 45688999999999986543 555554 3489999999994 8899999998775
Q ss_pred HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 345 LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 345 l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
+.+.......++.... .....+|++...+.++.++++++... +++++.++.+++++++++.|+++ |+.
T Consensus 264 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~ 331 (397)
T 3f9t_A 264 YKRYLDVDAPYLTETR---QATILGTRVGFGGACTYAVLRYLGRE-GQRKIVNECMENTLYLYKKLKEN-NFK 331 (397)
T ss_dssp GGGGTCEECTTSSSSE---ECSSCSSCCSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred HHHhhccCCccccCCC---ccccccccccchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence 4322111111211111 11223566656777888888888776 78999999999999999999987 453
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6e-18 Score=176.37 Aligned_cols=267 Identities=13% Similarity=0.071 Sum_probs=169.2
Q ss_pred CCceecc-CCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHH-HHHHhCCCCCCEEEEEcCCcchh
Q psy8733 50 HPVINFG-AGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAA-LRELLNVPNNYKILFLQGGGTGM 127 (621)
Q Consensus 50 ~~~~lf~-aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~-La~Ll~~p~~yeI~f~~gggT~~ 127 (621)
..+|++. +++.+.|++|++++.+.+.+..+.+.+ ..++.+....+.+.+.|+. ++++++.+ +|+|+ +|||+
T Consensus 8 ~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~-~g~t~- 80 (371)
T 2e7j_A 8 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFC--TTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVT-NGARE- 80 (371)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC----------------------CCHHHHHHTHHHHHTTSS---EEEEE-SSHHH-
T ss_pred CcEEecccccCCCCCHHHHHHHHHHHhhcccCCcc--ccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEe-CChHH-
Confidence 3467777 667789999999999887543211100 0122333456678899999 99999986 68876 66888
Q ss_pred hhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccc
Q psy8733 128 FAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 128 ~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
+++++ +..++.+|+++.+..+++.+.... ++..|...+..+..
T Consensus 81 ----a~~~~--------------------------~~~~~~~gd~vl~~~~~~~~~~~~--~~~~g~~~~~v~~~----- 123 (371)
T 2e7j_A 81 ----AKFAV--------------------------MHSLAKKDAWVVMDENCHYSSYVA--AERAGLNIALVPKT----- 123 (371)
T ss_dssp ----HHHHH--------------------------HHHHCCTTCEEEEETTCCHHHHHH--HHHTTCEEEEECCC-----
T ss_pred ----HHHHH--------------------------HHHHhCCCCEEEEccCcchHHHHH--HHHcCCeEEEeecc-----
Confidence 33332 233334455554444455544322 56667543322200
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCC-----CCceEEEEecc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD-----PEASYLYYCDN 282 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~-----~~t~~V~~thn 282 (621)
.++...++++++ +. .++ +++++|.+++.
T Consensus 124 -------------------------~~~~~~~d~~~l---------------------~~-~l~~~~~~~~~~~v~~~~~ 156 (371)
T 2e7j_A 124 -------------------------DYPDYAITPENF---------------------AQ-TIEETKKRGEVVLALITYP 156 (371)
T ss_dssp -------------------------CTTTCCCCHHHH---------------------HH-HHHHHTTTSCEEEEEEESS
T ss_pred -------------------------cCCCCCcCHHHH---------------------HH-HHHhhcccCCeEEEEEECC
Confidence 000001112221 00 112 57899999999
Q ss_pred cccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhh-hCCCCC
Q psy8733 283 ETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEY-ALPITP 353 (621)
Q Consensus 283 ET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~-~~~~~P 353 (621)
.|.+|...|+ +++++|+++|+|.+++.|..++++.+++ ++++|.||+++ |.|+|+++++++++++ +.+...
T Consensus 157 ~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~ 236 (371)
T 2e7j_A 157 DGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEK 236 (371)
T ss_dssp CTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSS
T ss_pred CCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhcccccc
Confidence 9999999985 4568999999999999999988887765 99999999995 7799999999998776 543221
Q ss_pred ceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHHHccCCccc
Q psy8733 354 TVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNS--LQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 354 ~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~--~~la~~L~e~L~~~~g~~~ 418 (621)
.+. .+.....+|++...++++.++++++.+ .+.++. +++++++++.|+++ |+..
T Consensus 237 ~~~-----~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~l~~~L~~~-~~~~ 292 (371)
T 2e7j_A 237 YKN-----KEVELLGCTARGATIITLMASFPHVRE-----RIKRWDEEVEKARRFAAEMEKL-GIKQ 292 (371)
T ss_dssp CTT-----SBGGGTTCCCCSHHHHHHHHHHHHHHH-----HGGGHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred Ccc-----cccccccCCcCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHc-CcEE
Confidence 110 001112578888889999999998764 556667 78888999999887 5543
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=171.22 Aligned_cols=270 Identities=13% Similarity=0.109 Sum_probs=169.2
Q ss_pred CceeccCCC--CCCCHHHHHHH--HHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcch
Q psy8733 51 PVINFGAGP--AKLPREVLEEV--KETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTG 126 (621)
Q Consensus 51 ~~~lf~aGP--s~~P~~Vlea~--~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~ 126 (621)
..+++++|+ .+.|+.|.+.+ .+.+..|.. + .+..++.+.++++++|+.+++++|++.. +|+|+ .|+|.
T Consensus 65 ~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~-----~-~~~~~~g~~~~~~~~~~~la~~~g~~~~-~i~~~-~g~ta 136 (438)
T 1wyu_A 65 HKAFLGGGVRSHHVPPVVQALAARGEFLTAYTP-----Y-QPEVSQGVLQATFEYQTMIAELAGLEIA-NASMY-DGATA 136 (438)
T ss_dssp TTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSC-----C-SGGGCHHHHHHHHHHHHHHHHHHTSSEE-CSCBS-SHHHH
T ss_pred cccccCCCccCCcCcHHHHHHHhcchhhhcCCC-----C-cchhhhhHHHHHHHHHHHHHHHhCCCcc-ceEEe-CcHHH
Confidence 356788887 66887774444 333333311 1 0113677889999999999999999743 56676 45775
Q ss_pred hhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccc
Q psy8733 127 MFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 127 ~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
++|+ +++.. .+++||+|++... .|.+ +...|...|+..|...+..+..
T Consensus 137 a~ea--~~~a~---~~~~gd~Viv~~~----~h~s-------------------~~~~~~~~a~~~G~~v~~v~~~---- 184 (438)
T 1wyu_A 137 LAEG--VLLAL---RETGRMGVLVSQG----VHPE-------------------YRAVLRAYLEAVGAKLLTLPLE---- 184 (438)
T ss_dssp HHHH--HHHHH---HHHTCCEEEEETT----SCHH-------------------HHHHHHHHHHHTTCEEEEECCB----
T ss_pred HHHH--HHHHH---hcCCCCEEEEcCc----cCHh-------------------HHHHHHHHHHHCCCEEEEEcCc----
Confidence 4444 22221 2345666666543 1111 1123445566677643322100
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
+ +.+ +.+. +++++++|.++|. |.+
T Consensus 185 ----------------------------~------------------------~~~-d~~~--i~~~t~~v~i~~p-n~t 208 (438)
T 1wyu_A 185 ----------------------------G------------------------GRT-PLPE--VGEEVGAVVVQNP-NFL 208 (438)
T ss_dssp ----------------------------T------------------------TBC-CCCC--CCTTEEEEEEESS-CTT
T ss_pred ----------------------------C------------------------Ccc-CHHH--hCCCeEEEEEECC-CCC
Confidence 0 001 1222 5678999999998 999
Q ss_pred cccccc-----ccccCCCcEEEecc-cccCCCccccccc--ceEEecccc-----cc-CCCccEEEEEchhHHhhhCCCC
Q psy8733 287 GVEFNY-----IPDSQGIPLVSDMS-SNFLSRKFDVSKF--GVIIAGAQK-----NI-GPAGITVVIVREDLLEYALPIT 352 (621)
Q Consensus 287 Gv~~p~-----i~~~~g~llvvDav-Ss~G~~pIDv~~~--gvl~asaqK-----~l-GP~Glg~livr~~ll~~~~~~~ 352 (621)
|...|+ +++++|+++++|+. +++|..+.+ .++ |++++|+|| |+ || |+|++++++++++++....
T Consensus 209 G~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~ 286 (438)
T 1wyu_A 209 GALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRL 286 (438)
T ss_dssp SBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCC
T ss_pred eEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCce
Confidence 999986 45688999998866 668876555 445 488888998 67 57 9999999999887753321
Q ss_pred C----------c-eeecccccc-CCCccCCchH---HHHHHHHHH--HHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 353 P----------T-VFHFKINAD-NNSVYNTPPT---FVVHVIQRV--FAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 353 P----------~-~ld~~~~~~-~~s~~~TP~v---~~I~aL~~a--L~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
- . .+++..... ......|+|+ ..+.++.++ ++++.++ |++++.++..++++++++.|++++|
T Consensus 287 ~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~~g 365 (438)
T 1wyu_A 287 VSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPE-GLREVALKSVEMAHKLHALLLEVPG 365 (438)
T ss_dssp EEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred eccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0 0 011100000 0112356665 556666666 7877777 7999999999999999999999876
Q ss_pred cccC
Q psy8733 416 FYEC 419 (621)
Q Consensus 416 ~~~~ 419 (621)
+.+.
T Consensus 366 ~~~~ 369 (438)
T 1wyu_A 366 VRPF 369 (438)
T ss_dssp CEEC
T ss_pred eEEC
Confidence 6543
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=164.95 Aligned_cols=146 Identities=19% Similarity=0.107 Sum_probs=105.7
Q ss_pred CCCCceEEEEecccccccccccc-----cccc------CCCcEEEecccccCCC-------ccccc--ccceEEeccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDS------QGIPLVSDMSSNFLSR-------KFDVS--KFGVIIAGAQKN 329 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~------~g~llvvDavSs~G~~-------pIDv~--~~gvl~asaqK~ 329 (621)
+++++++|.+++.+|.+|...|+ ++++ ++++++||++++.+.. +.+++ ..|++++++||+
T Consensus 184 i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~ 263 (452)
T 2dgk_A 184 CDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKF 263 (452)
T ss_dssp CCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTT
T ss_pred HhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccc
Confidence 56689999999999999999986 3455 4999999999987653 24443 344889999999
Q ss_pred c-CCCccEEEEEchh-HH-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8733 330 I-GPAGITVVIVRED-LL-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 330 l-GP~Glg~livr~~-ll-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L 406 (621)
+ +|.|+|+++++++ .+ +.+. ..|.|+... .......+|.+...+.++.++++.+..+ |++++.++..++++++
T Consensus 264 ~~~~~~~G~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~r~~~~~~~~~aal~~lg~~-g~~~~~~~~~~~a~~l 339 (452)
T 2dgk_A 264 GLAPLGCGWVIWRDEEALPQELV-FNVDYLGGQ--IGTFAINFSRPAGQVIAQYYEFLRLGRE-GYTKVQNASYQVAAYL 339 (452)
T ss_dssp TCCCSSCEEEEESSGGGSCGGGC-EEECCTTCC--EEECCSCCSCBCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCHHHHHHHhc-cCccccCCC--CCCcccCCCChhHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHH
Confidence 8 5999999999865 33 3321 123232110 0011223455555667777788888776 7999999999999999
Q ss_pred HHHHHccCCcccC
Q psy8733 407 YQEIDNSDKFYEC 419 (621)
Q Consensus 407 ~e~L~~~~g~~~~ 419 (621)
++.|++++|+.+.
T Consensus 340 ~~~L~~~~~~~~~ 352 (452)
T 2dgk_A 340 ADEIAKLGPYEFI 352 (452)
T ss_dssp HHHHHTTSSEEEE
T ss_pred HHHHHhCCCeEEe
Confidence 9999998877654
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-15 Score=163.21 Aligned_cols=279 Identities=11% Similarity=0.006 Sum_probs=171.4
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCC--CCC--EEEEEcCCcchh
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP--NNY--KILFLQGGGTGM 127 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p--~~y--eI~f~~gggT~~ 127 (621)
.++.+..++..|+.|.+++.+.+... .. ..+.++.+.++.+++++.+++++|++ .+. .-+|+ .|||+
T Consensus 58 ~~l~s~~t~~~~~~v~~~l~~~~~~~---~~----~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t-~ggte- 128 (502)
T 3hbx_A 58 LNLASFVTTWMEPECDKLIMSSINKN---YV----DMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGT-VGSSE- 128 (502)
T ss_dssp GBTTCCSCCCCCHHHHHHHHHTTTCB---TT----CTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEE-SSHHH-
T ss_pred ceeccccCCCCCHHHHHHHHHHhccC---CC----ChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceec-CcHHH-
Confidence 34455567888999999998876331 11 13457778899999999999999998 321 12244 56888
Q ss_pred hhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCC-----cEEEEEcChHHHHHHHHHHHhCCceeeeccc
Q psy8733 128 FAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG-----KADYVVTGSWSKKAAAEAEKYGKVNLVIPKV 202 (621)
Q Consensus 128 ~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~-----~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~ 202 (621)
++++....+..+ + ......+|+ ++.+...++.+ +.+.++..|...+..+..
T Consensus 129 ----a~~~a~~a~~~~---------------~---~~~~~~~G~~~~~~~vi~~~~~h~s--~~~~~~~~G~~~~~v~~~ 184 (502)
T 3hbx_A 129 ----AIMLAGLAFKRK---------------W---QNKRKAEGKPVDKPNIVTGANVQVC--WEKFARYFEVELKEVKLS 184 (502)
T ss_dssp ----HHHHHHHHHHHH---------------H---HHHHHHTTCCCSCCEEEEETTCCHH--HHHHHHHTTCEEEEECCB
T ss_pred ----HHHHHHHHHHHH---------------H---hHHHHhcCCCCCCcEEEEcCCchHH--HHHHHHHcCceeEEEecC
Confidence 344321111000 0 000000122 22222222222 445566677643322210
Q ss_pred ccccccCCCCCCCCCCCccccccccCccccCccc-hhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEec
Q psy8733 203 SKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWS-KKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCD 281 (621)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~-~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~th 281 (621)
+. -.+++|++ + -.+++++++|.+++
T Consensus 185 --------------------------------~~~~~~d~~~l---------------------~-~~i~~~t~~v~~~~ 210 (502)
T 3hbx_A 185 --------------------------------EGYYVMDPQQA---------------------V-DMVDENTICVAAIL 210 (502)
T ss_dssp --------------------------------TTBCSCCHHHH---------------------H-HHCCTTEEEEEEEB
T ss_pred --------------------------------CCcCcCCHHHH---------------------H-HHHhhCCEEEEEec
Confidence 00 00112221 0 13567899999999
Q ss_pred ccccccccccc-----ccccC------CCcEEEecccccC-------CCccccc--ccceEEecccccc-CCCccEEEEE
Q psy8733 282 NETVDGVEFNY-----IPDSQ------GIPLVSDMSSNFL-------SRKFDVS--KFGVIIAGAQKNI-GPAGITVVIV 340 (621)
Q Consensus 282 nET~tGv~~p~-----i~~~~------g~llvvDavSs~G-------~~pIDv~--~~gvl~asaqK~l-GP~Glg~liv 340 (621)
..|.+|...|+ +++++ |++++||++++.+ ..+.++. ..|++.+++||++ +|.|+|++++
T Consensus 211 ~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~ 290 (502)
T 3hbx_A 211 GSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290 (502)
T ss_dssp SCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEE
T ss_pred CCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEE
Confidence 99999999986 44556 9999999999833 3445554 3458999999999 5999999999
Q ss_pred chhH-HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 341 REDL-LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 341 r~~l-l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+++. +.......+.|+... .......+|++...+.++..+++.+..+ |++.+.++..+++++|++.|.+++++.+.
T Consensus 291 ~~~~~l~~~~~~~~~yl~~~--~~~~~~~~sr~~~~~~a~~~al~~lg~~-g~~~~~~~~~~~a~~l~~~L~~~~~~~~~ 367 (502)
T 3hbx_A 291 RNKEDLPEELIFHINYLGAD--QPTFTLNFSKGSSQVIAQYYQLIRLGHE-GYRNVMENCRENMIVLREGLEKTERFNIV 367 (502)
T ss_dssp SSGGGSCGGGCEEECSSSSC--EEECCSCCSCBSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEC
T ss_pred eCHHHhhHHhccCcccccCC--CCCccccCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 8653 322211112222111 1111223566666788888899988777 89999999999999999999999877654
Q ss_pred c
Q psy8733 420 P 420 (621)
Q Consensus 420 ~ 420 (621)
.
T Consensus 368 ~ 368 (502)
T 3hbx_A 368 S 368 (502)
T ss_dssp S
T ss_pred e
Confidence 3
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-15 Score=155.56 Aligned_cols=245 Identities=15% Similarity=0.082 Sum_probs=150.8
Q ss_pred CCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhh
Q psy8733 59 PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISS 138 (621)
Q Consensus 59 Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~ 138 (621)
.+++|++|++++.+.+.+.. ...+ ..+++.|+.+++++|++ +++|+ +|||+ +++++..
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~---------~~~~----~~~~~l~~~la~~~~~~---~v~~~-~ggt~-----al~~~~~ 65 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQ---------LTQG----KRSLLFEEALCEFLGVK---HALVF-NSATS-----ALLTLYR 65 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSC---------CSSS----HHHHHHHHHHHHHHTCS---EEEEE-SCHHH-----HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCc---------ccCC----hHHHHHHHHHHHHhCCC---eEEEe-CCHHH-----HHHHHHH
Confidence 46799999999999874311 0112 35788999999999986 68876 67898 5665555
Q ss_pred ccC--CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCC
Q psy8733 139 SMN--VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNR 216 (621)
Q Consensus 139 ~~~--~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~ 216 (621)
.++ +++||+|++... ++.+. ...++..|...+..+..
T Consensus 66 ~~~~~~~~gd~Vl~~~~-------------------------~~~~~--~~~~~~~g~~~~~~~~~-------------- 104 (375)
T 2fnu_A 66 NFSEFSADRNEIITTPI-------------------------SFVAT--ANMLLESGYTPVFAGIK-------------- 104 (375)
T ss_dssp HSSCCCTTSCEEEECSS-------------------------SCTHH--HHHHHHTTCEEEECCBC--------------
T ss_pred HhcccCCCCCEEEECCC-------------------------ccHhH--HHHHHHCCCEEEEeccC--------------
Confidence 555 667777776653 22221 12234456543222110
Q ss_pred CCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEecccccccccccc--
Q psy8733 217 DPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNETVDGVEFNY-- 292 (621)
Q Consensus 217 ~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnET~tGv~~p~-- 292 (621)
+...+ +.+.+ .+++++++|.++|. +|...|+
T Consensus 105 ------------------~~~~~------------------------d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~ 139 (375)
T 2fnu_A 105 ------------------NDGNI------------------------DELALEKLINERTKAIVSVDY---AGKSVEVES 139 (375)
T ss_dssp ------------------TTSSB------------------------CGGGSGGGCCTTEEEEEEECG---GGCCCCHHH
T ss_pred ------------------CCCCC------------------------CHHHHHhhcCcCceEEEEeCC---cCCccCHHH
Confidence 00001 11111 34568899888887 7999885
Q ss_pred ---ccccCCCcEEEecccccCCCccc--ccccc---eEEeccccccCCCccEEEEEc--hhHHhhhCCCCC-ceee---c
Q psy8733 293 ---IPDSQGIPLVSDMSSNFLSRKFD--VSKFG---VIIAGAQKNIGPAGITVVIVR--EDLLEYALPITP-TVFH---F 358 (621)
Q Consensus 293 ---i~~~~g~llvvDavSs~G~~pID--v~~~g---vl~asaqK~lGP~Glg~livr--~~ll~~~~~~~P-~~ld---~ 358 (621)
+++++|+++|+|.++++|..+.+ +..++ +..+|+||++|| |+|.++++ +++.+++.+... ...+ +
T Consensus 140 i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T 2fnu_A 140 VQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFF 218 (375)
T ss_dssp HHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEEESSSS
T ss_pred HHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccc-cCceEEEeCCHHHHHHHHHHHhcCCcccccc
Confidence 45678999999999999987644 44443 556677899998 99999995 556665543111 0000 0
Q ss_pred cc-cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 359 KI-NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 359 ~~-~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
.. ....+..+.+++.... +.+.... +++.+.++.+++++++++.|++++|+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~a------~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 273 (375)
T 2fnu_A 219 EGEVKSIGHNFRLNEIQSA------LGLSQLK-KAPFLMQKREEAALTYDRIFKDNPYFTPL 273 (375)
T ss_dssp CEEESSCCCBCCCCHHHHH------HHHHHHT-THHHHHHHHHHHHHHHHHHHTTCSSEEES
T ss_pred ccccccccccCCCCHHHHH------HHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 00 0001111233333332 2222233 78889999999999999999998766544
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-15 Score=156.08 Aligned_cols=248 Identities=10% Similarity=0.063 Sum_probs=159.9
Q ss_pred CceeccCC--CCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 51 PVINFGAG--PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 51 ~~~lf~aG--Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
.++.|+.| |.+.|++|++++.+.+.++ ++.+ ...+.+.|+.++++++++.+ +|+|+ +|||+
T Consensus 33 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-----------~~y~--~~~~~~lr~~la~~~~~~~~-~v~~~-~g~t~-- 95 (363)
T 3ffh_A 33 KITKLSSNENPLGTSKKVAAIQANSSVET-----------EIYP--DGWASSLRKEVADFYQLEEE-ELIFT-AGVDE-- 95 (363)
T ss_dssp CCEECSSCSCTTCCCHHHHHHHHTCBSCC-----------CBC------CHHHHHHHHHHHTCCGG-GEEEE-SSHHH--
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHHh-----------hcCC--CcchHHHHHHHHHHhCCChh-hEEEe-CCHHH--
Confidence 34445444 4457899999998865321 1112 12467899999999998654 68886 67888
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
++++ ++..++.+|+++.+..+++.+ +...++..|...+..+..
T Consensus 96 ---a~~~--------------------------~~~~~~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~v~~~------ 138 (363)
T 3ffh_A 96 ---LIEL--------------------------LTRVLLDTTTNTVMATPTFVQ--YRQNALIEGAEVREIPLL------ 138 (363)
T ss_dssp ---HHHH--------------------------HHHHHCSTTCEEEEEESSCHH--HHHHHHHHTCEEEEEECC------
T ss_pred ---HHHH--------------------------HHHHHccCCCEEEEcCCChHH--HHHHHHHcCCEEEEecCC------
Confidence 3433 333444556666555555443 445566777643332210
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV 288 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv 288 (621)
+...+++|++ + -.+++++++|++++..+.||.
T Consensus 139 --------------------------~~~~~d~~~l---------------------~-~~i~~~~~~v~~~~p~nptG~ 170 (363)
T 3ffh_A 139 --------------------------QDGEHDLEGM---------------------L-NAIDEKTTIVWICNPNNPTGN 170 (363)
T ss_dssp --------------------------TTSCCCHHHH---------------------H-HHCCTTEEEEEEESSCTTTCC
T ss_pred --------------------------CCCCcCHHHH---------------------H-HhcccCCCEEEEeCCCCCcCC
Confidence 0001122221 0 125578999999999999999
Q ss_pred cccc-----ccccC--CCcEEEecccccCCC-----cccc-cccc--eEEeccccccCCCcc--EEEEEchhHHhhhCCC
Q psy8733 289 EFNY-----IPDSQ--GIPLVSDMSSNFLSR-----KFDV-SKFG--VIIAGAQKNIGPAGI--TVVIVREDLLEYALPI 351 (621)
Q Consensus 289 ~~p~-----i~~~~--g~llvvDavSs~G~~-----pIDv-~~~g--vl~asaqK~lGP~Gl--g~livr~~ll~~~~~~ 351 (621)
..|. +.+.. |+++|+|.+++.+.. .+.. ...+ +++.|..|++|++|+ |++++++++++++.+.
T Consensus 171 ~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~ 250 (363)
T 3ffh_A 171 YIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIV 250 (363)
T ss_dssp CCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHT
T ss_pred CcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHh
Confidence 9985 33333 999999999984331 1222 1223 667788899998888 9999999998766421
Q ss_pred CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 352 ~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
. ..+++|....+++.++|+.. . .++.+.++.+++.+++++.|+++.|+.
T Consensus 251 ~--------------~~~~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~~~~~~l~~~l~~~~g~~ 299 (363)
T 3ffh_A 251 R--------------PPFNTTSIGQKLAIEAIKDQ--A-FIGECRTSNANGIKQYEAFAKRFEKVK 299 (363)
T ss_dssp C--------------CSCCCBHHHHHHHHHHHHCH--H-HHHHHHHHHHHHHHHHHHHHHHCTTCE
T ss_pred C--------------CCCCCCHHHHHHHHHHhcCH--H-HHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 1 13467788888888888632 2 578889999999999999999854453
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=160.20 Aligned_cols=282 Identities=12% Similarity=0.072 Sum_probs=163.5
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+..|+++...+++|++|++++.....+. +.. ....++.+.++-+++++.+++++|.++..+++|+ +|||++..
T Consensus 100 ~~~yl~~~~~~~~~~~v~~~~~~~~~n~---~~~---~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t-~ggt~a~~ 172 (497)
T 2qma_A 100 HPDCIAHLHTPPLMPAVAAEAMIAALNQ---SMD---SWDQASSATYVEQKVVNWLCDKYDLSEKADGIFT-SGGTQSNQ 172 (497)
T ss_dssp STTBCSSSCCCCBHHHHHHHHHHHHHCC---CTT---CGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEE-SSHHHHHH
T ss_pred CCCeeEeCCCCCcHHHHHHHHHHHhhcc---ccc---chhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEc-CCchHHHH
Confidence 4679999999999999999998776432 111 2334677778888889999999999764578887 67998433
Q ss_pred HHHHHHhhh-cc-----------CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEE-cChHHHHHHHHHHHhCC--
Q psy8733 130 AVAMNLISS-SM-----------NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVV-TGSWSKKAAAEAEKYGK-- 194 (621)
Q Consensus 130 a~alNlla~-~~-----------~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~-tG~~~~~~~~~a~~~G~-- 194 (621)
. ++..... .+ |++. . .|+...++. .++++ +.+.++..|.
T Consensus 173 ~-al~~ar~~~~~~~~~~~~~~~G~~~---------------------~--~g~~~v~~s~~~h~s--~~~~~~~~g~g~ 226 (497)
T 2qma_A 173 M-GLMLARDWIADKLSGHSIQKLGLPD---------------------Y--ADKLRIVCSKKSHFT--VQKSASWMGLGE 226 (497)
T ss_dssp H-HHHHHHHHHHHHHHCCCHHHHCSCG---------------------G--GGGEEEEEETTSCTH--HHHHHHHTTSCG
T ss_pred H-HHHHHHHHHHHhhcccchhhccccc---------------------c--cCCeEEEECCCchHH--HHHHHHHcCCCc
Confidence 3 1111100 00 0000 0 012122222 23333 2233444443
Q ss_pred -ceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccC--CC
Q psy8733 195 -VNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWN--RD 271 (621)
Q Consensus 195 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~--i~ 271 (621)
..+..+.. ... .+++++++ +.+. ..
T Consensus 227 ~~v~~v~~~-------------~~~-------------------~~d~~~L~--------------------~~i~~~~~ 254 (497)
T 2qma_A 227 KAVMTVDAN-------------ADG-------------------TMDITKLD--------------------EVIAQAKA 254 (497)
T ss_dssp GGEEEECBC-------------TTS-------------------SBCGGGHH--------------------HHHHHHHH
T ss_pred ccEEEEecC-------------CCC-------------------cCCHHHHH--------------------HHHHHHHH
Confidence 11111100 000 01111110 0010 01
Q ss_pred CCc--eEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc----ccc---cceEEeccccccC-CCccE
Q psy8733 272 PEA--SYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD----VSK---FGVIIAGAQKNIG-PAGIT 336 (621)
Q Consensus 272 ~~t--~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID----v~~---~gvl~asaqK~lG-P~Glg 336 (621)
.++ .+|.+++..|.+|...|+ +++++|++++||++++.+..+.+ ++. .|+++++.|||++ |.|+|
T Consensus 255 ~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G 334 (497)
T 2qma_A 255 EGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCG 334 (497)
T ss_dssp TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCE
T ss_pred CCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceE
Confidence 123 488999999999998886 45688999999999999988776 333 3689999999995 99999
Q ss_pred EEEEchhH-HhhhCCCCCceeeccccc--c--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 337 VVIVREDL-LEYALPITPTVFHFKINA--D--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 337 ~livr~~l-l~~~~~~~P~~ld~~~~~--~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+++++++. ++.+.. .+.|+...... . ......|-. +....+..+++.+..+ |++++.++..++++++++.|+
T Consensus 335 ~l~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~r~-~~al~~~~~l~~lg~~-g~~~~~~~~~~~a~~l~~~L~ 411 (497)
T 2qma_A 335 ALLVNDKSNFKFLLH-HADYLNREHDELPNLVDKSIATTKR-FDALKVFMTMQNVGPK-ALGDMYDHLLAQTLEVADMIR 411 (497)
T ss_dssp EEEESCGGGGGGGCC---------------------CCSCC-CTHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHhcC-CchhcCCccccCCCccccCCCCCCc-hhHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 99998765 333321 22232111000 0 000000000 1123445577777655 789999999999999999999
Q ss_pred ccCCcccC
Q psy8733 412 NSDKFYEC 419 (621)
Q Consensus 412 ~~~g~~~~ 419 (621)
+++|+.+.
T Consensus 412 ~~~~~~~~ 419 (497)
T 2qma_A 412 TNDQFELL 419 (497)
T ss_dssp TCTTEEEC
T ss_pred hCCCeEEE
Confidence 98777653
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-14 Score=152.04 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=111.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccC-----------CC-cccccccc--eEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL-----------SR-KFDVSKFG--VIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G-----------~~-pIDv~~~g--vl~asaqK~l 330 (621)
+++++++|.+++..|.+|...|+ +++++|+++|+|++++.+ .. +++...+| ++++++||++
T Consensus 203 i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l 282 (497)
T 3mc6_A 203 INKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYG 282 (497)
T ss_dssp CCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTT
T ss_pred HhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhc
Confidence 56789999999999999999886 346899999999998732 23 46665554 9999999998
Q ss_pred -CCCccEEEEEchhHHhhhCCC-CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 331 -GPAGITVVIVREDLLEYALPI-TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 331 -GP~Glg~livr~~ll~~~~~~-~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
||.|+|+++++++.+.+.... .+.+.. .........+|.+...+.++.++++.+.+. |++++.++..++++++++
T Consensus 283 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~a~~aal~~l~~~-~~~~~~~~~~~~~~~l~~ 359 (497)
T 3mc6_A 283 FAPKGSSVIMYRNSDLRMHQYYVNPAWTG--GLYGSPTLAGSRPGAIVVGCWATMVNMGEN-GYIESCQEIVGAAMKFKK 359 (497)
T ss_dssp CCCSSCEEEECSSHHHHTTTSCCBTTCTT--SCBCCSSSCSSCBHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceeEEecCHHHHhhhhcccccccC--CCcCCcCcccCCcchhHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHH
Confidence 699999999998877644221 121110 001122344677778889999999999887 899999999999999999
Q ss_pred HHHc-cCCcccC
Q psy8733 409 EIDN-SDKFYEC 419 (621)
Q Consensus 409 ~L~~-~~g~~~~ 419 (621)
.|.+ ++|+...
T Consensus 360 ~L~~~~~g~~~~ 371 (497)
T 3mc6_A 360 YIQENIPDLDIM 371 (497)
T ss_dssp HHHHSCTTCEEC
T ss_pred HHHhcCCCEEEe
Confidence 9999 6766543
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=165.74 Aligned_cols=141 Identities=12% Similarity=0.134 Sum_probs=101.9
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccc-----cceEEecccccc-CCCccEEEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSK-----FGVIIAGAQKNI-GPAGITVVIV 340 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~-----~gvl~asaqK~l-GP~Glg~liv 340 (621)
+++++|.+ +..+.+ ...|+ +++++|+++++|++++.|..+.++.. .|++++|.||+| ||.| |++++
T Consensus 192 ~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~ 268 (483)
T 1rv3_A 192 FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFY 268 (483)
T ss_dssp HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEE
T ss_pred cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEE
Confidence 57899988 666655 66775 56789999999999987766655543 359999999999 7999 99999
Q ss_pred chhHHhhhCCCC--Cceeecccc---ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 341 REDLLEYALPIT--PTVFHFKIN---ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 341 r~~ll~~~~~~~--P~~ld~~~~---~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
++++.. +.... ....++... ...+...+||+...+.++..|++++.+. +++.+.++..++++++++.|.+. |
T Consensus 269 ~~~~~~-~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g 345 (483)
T 1rv3_A 269 RRGVRS-VDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP-EFKEYQRQVVANCRALSAALVEL-G 345 (483)
T ss_dssp ECSBCC--------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred cchhhh-hccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 987431 11000 000011100 0112346899999999999999998766 78999999999999999999987 4
Q ss_pred ccc
Q psy8733 416 FYE 418 (621)
Q Consensus 416 ~~~ 418 (621)
+.+
T Consensus 346 ~~~ 348 (483)
T 1rv3_A 346 YKI 348 (483)
T ss_dssp CEE
T ss_pred CEe
Confidence 543
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=157.94 Aligned_cols=147 Identities=11% Similarity=0.011 Sum_probs=101.1
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc-----cccc---ceEEeccccccC-CCccEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD-----VSKF---GVIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID-----v~~~---gvl~asaqK~lG-P~Glg~l 338 (621)
++++|++++..|.+|...|+ +++++|++++||++++.+..+.+ ++.+ |++++++|||+| |.|+|++
T Consensus 259 ~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l 338 (515)
T 2jis_A 259 VPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSAL 338 (515)
T ss_dssp EEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred CcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEE
Confidence 48999999999999999986 45688999999999999998776 5443 599999999996 9999999
Q ss_pred EEchh--HHhhhCCCCCceeeccccc-cCCCccCCchHH-----HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 339 IVRED--LLEYALPITPTVFHFKINA-DNNSVYNTPPTF-----VVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 339 ivr~~--ll~~~~~~~P~~ld~~~~~-~~~s~~~TP~v~-----~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+++++ ++++.....+.|+...... .....++|+++. ....+..+++.+... |++++.++..++++++++.|
T Consensus 339 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~-g~~~~~~~~~~~a~~l~~~L 417 (515)
T 2jis_A 339 LLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQ-GLERRIDQAFVLARYLVEEM 417 (515)
T ss_dssp EESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 99988 6665433233333111000 000001111100 112333446666666 79999999999999999999
Q ss_pred HccCCcccCc
Q psy8733 411 DNSDKFYECP 420 (621)
Q Consensus 411 ~~~~g~~~~~ 420 (621)
++++|+.+..
T Consensus 418 ~~~~g~~~~~ 427 (515)
T 2jis_A 418 KKREGFELVM 427 (515)
T ss_dssp HTSTTEEESS
T ss_pred hcCCCEEEeC
Confidence 9988776653
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=155.88 Aligned_cols=260 Identities=14% Similarity=0.142 Sum_probs=154.9
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
..+|+++.++++.|++|++++.+.+..|.. +....+..+++++.+++++|++.+ +|+|+ +|||++
T Consensus 14 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~-----------~~g~~~~~~~~~~~l~~~~g~~~~-~v~~~-~g~t~a-- 78 (359)
T 1svv_A 14 KPYSFVNDYSVGMHPKILDLMARDNMTQHA-----------GYGQDSHCAKAARLIGELLERPDA-DVHFI-SGGTQT-- 78 (359)
T ss_dssp -CEECSCSCSSCCCHHHHHHHHHHTTCCCC-----------STTCSHHHHHHHHHHHHHHTCTTS-EEEEE-SCHHHH--
T ss_pred eeEEecCCCcCCCCHHHHHHHHHHHhhccc-----------cccccHHHHHHHHHHHHHhCCCCc-cEEEe-CCchHH--
Confidence 467888888889999999999998754321 011235778899999999998654 78886 678983
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
++++...+ +++||+|++.. +++.+......++..|...+..+.
T Consensus 79 ---~~~~~~~~-~~~gd~vl~~~-------------------------~~~~~~~~~~~~~~~g~~~~~v~~-------- 121 (359)
T 1svv_A 79 ---NLIACSLA-LRPWEAVIATQ-------------------------LGHISTHETGAIEATGHKVVTAPC-------- 121 (359)
T ss_dssp ---HHHHHHHH-CCTTEEEEEET-------------------------TSHHHHSSTTHHHHTTCCEEEECC--------
T ss_pred ---HHHHHHHH-hCCCCEEEEcc-------------------------cchHHHHHHHHHhcCCCeeEEEeC--------
Confidence 33322222 23455555544 333332111123455653222110
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
+ .|. +++++++. .+. .....-.+++++|.+++. |.+|..
T Consensus 122 ----------------------~-~~~--~d~~~l~~--------------~l~-~~~~~~~~~~~~v~~~~~-~ptG~~ 160 (359)
T 1svv_A 122 ----------------------P-DGK--LRVADIES--------------ALH-ENRSEHMVIPKLVYISNT-TEVGTQ 160 (359)
T ss_dssp ----------------------T-TSC--CCHHHHHH--------------HHH-HSCSTTSCEEEEEEEESS-CTTSCC
T ss_pred ----------------------C-CCe--ecHHHHHH--------------HHH-HHHhccCCCceEEEEEcC-CCCcee
Confidence 0 011 11222100 000 000001124899999988 789999
Q ss_pred cc---c-----ccccCCCcEEEeccc---ccCCCcccccc------cceEEeccccccCCCccEEEEEchhHHhhhCCCC
Q psy8733 290 FN---Y-----IPDSQGIPLVSDMSS---NFLSRKFDVSK------FGVIIAGAQKNIGPAGITVVIVREDLLEYALPIT 352 (621)
Q Consensus 290 ~p---~-----i~~~~g~llvvDavS---s~G~~pIDv~~------~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~ 352 (621)
.| + +++++|+++|+|.++ ++|..+.+... .+++..++||+.||.|+|++++++++++++.+.
T Consensus 161 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~~~- 239 (359)
T 1svv_A 161 YTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHL- 239 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHH-
T ss_pred cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHHHHHHH-
Confidence 87 2 346789999999999 77777766553 248889999987799999999999887654320
Q ss_pred CceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 353 PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 353 P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.. ..+..+.+ +.....++ .+++.+ ++++++.++.+++++++++.| +.+|+.
T Consensus 240 ---~~-----~~~~~~~~-~~~~~~~~---~~~l~~-~~~~~~~~~~~~~~~~l~~~L-~~~~~~ 290 (359)
T 1svv_A 240 ---IK-----QRGALMAK-GWLLGIQF---EVLMKD-NLFFELGAHSNKMAAILKAGL-EACGIR 290 (359)
T ss_dssp ---HH-----HTTCCCTT-THHHHHHH---HHHTST-THHHHHHHHHHHHHHHHHHHH-HHTTCC
T ss_pred ---Hh-----cCCccccc-chhhHHHH---HHHHhh-hhHHHHHHHHHHHHHHHHHHh-ccCCeE
Confidence 00 01111111 11222222 233444 368889999999999999999 455443
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-14 Score=147.33 Aligned_cols=246 Identities=11% Similarity=0.081 Sum_probs=158.2
Q ss_pred ceeccC--CCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 52 VINFGA--GPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 52 ~~lf~a--GPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
++.|+. .|.+.|++|++++.+.+..+...+ +. ...+.|+.+++++|++.+ +|+|+ +|||+
T Consensus 32 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-------~~------~~~~lr~~la~~~~~~~~-~v~~~-~g~~~--- 93 (365)
T 3get_A 32 VIKLASNENPFGTPPKAIECLRQNANKAHLYP-------DD------SMIELKSTLAQKYKVQNE-NIIIG-AGSDQ--- 93 (365)
T ss_dssp CEECSSCCCTTCSCHHHHHHHHHHGGGTTSCC-------CT------TCHHHHHHHHHHHTCCGG-GEEEE-SSHHH---
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHhhccCC-------CC------ChHHHHHHHHHHhCCCcc-eEEEC-CCHHH---
Confidence 344443 345688999999999875332211 10 014789999999998654 68876 67888
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+++++ +..++.+|+++.+..+++.+ +...++..|...+..+.
T Consensus 94 --a~~~~--------------------------~~~l~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~v~~-------- 135 (365)
T 3get_A 94 --VIEFA--------------------------IHSKLNSKNAFLQAGVTFAM--YEIYAKQCGAKCYKTQS-------- 135 (365)
T ss_dssp --HHHHH--------------------------HHHHCCTTCEEEECSSCCTH--HHHHHHHHTCEEEECSS--------
T ss_pred --HHHHH--------------------------HHHHhCCCCEEEEeCCChHH--HHHHHHHcCCEEEEEec--------
Confidence 34432 23333444444443333332 34456667764322110
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
.++.. +++|++ +. .+++++++|++++..|.||..
T Consensus 136 -----------------------~~~~~-~d~~~l---------------------~~-~l~~~~~~v~~~~p~nptG~~ 169 (365)
T 3get_A 136 -----------------------ITHNL-DEFKKL---------------------YE-THKDEIKLIFLCLPNNPLGEC 169 (365)
T ss_dssp -----------------------SSCCH-HHHHHH---------------------HH-HTTTTEEEEEEESSCTTTCCC
T ss_pred -----------------------CCCCC-CCHHHH---------------------HH-HhCCCCCEEEEcCCCCCCCCC
Confidence 01122 344442 11 245789999999999999999
Q ss_pred ccc-----ccc--cCCCcEEEecccc------cCCCcccccc----cc--eEEeccccccCCCc--cEEEEEchhHHhhh
Q psy8733 290 FNY-----IPD--SQGIPLVSDMSSN------FLSRKFDVSK----FG--VIIAGAQKNIGPAG--ITVVIVREDLLEYA 348 (621)
Q Consensus 290 ~p~-----i~~--~~g~llvvDavSs------~G~~pIDv~~----~g--vl~asaqK~lGP~G--lg~livr~~ll~~~ 348 (621)
.|. +.+ ++|+++|+|.+++ .+..+.+.-. ++ +++.|.+|++|++| +|+++.++++.+++
T Consensus 170 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~ 249 (365)
T 3get_A 170 LDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAF 249 (365)
T ss_dssp CCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHH
Confidence 984 333 5699999999998 3333344322 23 78889999999666 79999999988765
Q ss_pred CCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 349 LPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 349 ~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
... ....++|....+++.++|+.. . .++.+.++.+++.+++++.|+++ |+.
T Consensus 250 ~~~--------------~~~~~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~~~~~~l~~~l~~~-g~~ 300 (365)
T 3get_A 250 YKL--------------RAPFNVSNLALKAAVAAMDDD--E-FTEKTLENNFSQMELYKEFAKKH-NIK 300 (365)
T ss_dssp HHH--------------SCTTCSCHHHHHHHHHHHTCH--H-HHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred HHh--------------cCCCCcCHHHHHHHHHHhCCH--H-HHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence 321 012357778888888888742 2 57889999999999999999887 343
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-14 Score=146.70 Aligned_cols=244 Identities=8% Similarity=-0.012 Sum_probs=159.4
Q ss_pred CceeccCC--CCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 51 PVINFGAG--PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 51 ~~~lf~aG--Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
.++.|+.| |.+.|++|++++.+.+.+.. +.. ...+.+.|+.++++++++.+ +|+|+ +|||+
T Consensus 17 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----------~y~---~~~~~~l~~~la~~~~~~~~-~i~~~-~g~~~-- 79 (354)
T 3ly1_A 17 NPIRINFNENPLGMSPKAQAAARDAVVKAN----------RYA---KNEILMLGNKLAAHHQVEAP-SILLT-AGSSE-- 79 (354)
T ss_dssp SCEECSSCCCSSCCCHHHHHHHHHTGGGTT----------SCC---HHHHHHHHHHHHHHTTSCGG-GEEEE-SHHHH--
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHhhCc----------CCC---CCchHHHHHHHHHHhCCChH-HEEEe-CChHH--
Confidence 34445444 34588999999998874321 111 13567899999999998654 68886 67888
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
++++ ++..+..+||++.+..+++.+ +...++..|...+..+..
T Consensus 80 ---a~~~--------------------------~~~~l~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~~~~~------ 122 (354)
T 3ly1_A 80 ---GIRA--------------------------AIEAYASLEAQLVIPELTYGD--GEHFAKIAGMKVTKVKML------ 122 (354)
T ss_dssp ---HHHH--------------------------HHHHHCCTTCEEEEESSSCTH--HHHHHHHTTCEEEEECCC------
T ss_pred ---HHHH--------------------------HHHHHhCCCCeEEECCCCchH--HHHHHHHcCCEEEEecCC------
Confidence 3433 333344555555554444443 344566777643322210
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCC--CCceEEEEecccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD--PEASYLYYCDNETVD 286 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~--~~t~~V~~thnET~t 286 (621)
+...++++++ +. .++ +++++|++++..|.+
T Consensus 123 --------------------------~~~~~d~~~l---------------------~~-~l~~~~~~~~v~l~~p~npt 154 (354)
T 3ly1_A 123 --------------------------DNWAFDIEGL---------------------KA-AVAAYSGPSIVYLVNPNNPT 154 (354)
T ss_dssp --------------------------TTSCCCHHHH---------------------HH-HHHTCSSCEEEEEESSCTTT
T ss_pred --------------------------CCCCCCHHHH---------------------HH-HhccCCCCCEEEEeCCCCCc
Confidence 0001122221 00 123 689999999999999
Q ss_pred cccccc-----ccc--cCCCcEEEecccccCCCc------cc-cccc-c--eEEeccccccCCCc--cEEEEEchhHHhh
Q psy8733 287 GVEFNY-----IPD--SQGIPLVSDMSSNFLSRK------FD-VSKF-G--VIIAGAQKNIGPAG--ITVVIVREDLLEY 347 (621)
Q Consensus 287 Gv~~p~-----i~~--~~g~llvvDavSs~G~~p------ID-v~~~-g--vl~asaqK~lGP~G--lg~livr~~ll~~ 347 (621)
|...|. +.+ ++|+++|+|.+++.+... +. ++.+ + +++.|.+|++|++| +|+++.++++.++
T Consensus 155 G~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~ 234 (354)
T 3ly1_A 155 GTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIAL 234 (354)
T ss_dssp CCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHH
T ss_pred CCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHH
Confidence 999884 333 489999999998854432 11 1233 3 88889999999666 7999999998876
Q ss_pred hCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 348 ALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 348 ~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+... ....++|....+++.++|+.. . .++.+.++.+++.+++++.|+++
T Consensus 235 ~~~~--------------~~~~~~~~~~~~a~~~~l~~~--~-~~~~~~~~~~~~~~~l~~~l~~~ 283 (354)
T 3ly1_A 235 MGRY--------------VAGEKINFSGVDAALASMNDS--A-FITYSKKSNDVSRQILLKALEDL 283 (354)
T ss_dssp HGGG--------------TTCSCCCHHHHHHHHHHTTCH--H-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--------------cCCCCCCHHHHHHHHHHhcCH--H-HHHHHHHHHHHHHHHHHHHHHHC
Confidence 6421 112578888888888887743 2 57888999999999999999887
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-14 Score=148.84 Aligned_cols=251 Identities=14% Similarity=0.153 Sum_probs=158.2
Q ss_pred CCceeccCCCC--CCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchh
Q psy8733 50 HPVINFGAGPA--KLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGM 127 (621)
Q Consensus 50 ~~~~lf~aGPs--~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~ 127 (621)
+..+.|+.|.. +.|++|++++.+.+.+....+ ..+ ..+.+.|+.+++++|+++..+|+|+ +|||+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~-----y~~------~~~~~l~~~la~~~g~~~~~~i~~~-~g~t~- 96 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNR-----YPV------PSSEALRAKLKEVMQVPAGMEVLLG-NGSDE- 96 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTC-----SCC------CCHHHHHHHHHHHHTCCTTCEEEEE-EHHHH-
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhc-----CCC------CcHHHHHHHHHHHhCCCCcceEEEc-CCHHH-
Confidence 34555555543 478999999999886421111 111 1256889999999999544478886 56888
Q ss_pred hhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccc
Q psy8733 128 FAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 128 ~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
+++++...+ +++||+|++. .+++.+ +...++..|...+..+..
T Consensus 97 ----a~~~~~~~~-~~~gd~Vl~~-------------------------~~~~~~--~~~~~~~~g~~~~~v~~~----- 139 (367)
T 3euc_A 97 ----IISMLALAA-ARPGAKVMAP-------------------------VPGFVM--YAMSAQFAGLEFVGVPLR----- 139 (367)
T ss_dssp ----HHHHHHHHT-CCTTCEEEEE-------------------------ESCSCC--SCHHHHTTTCEEEEEECC-----
T ss_pred ----HHHHHHHHH-cCCCCEEEEc-------------------------CCCHHH--HHHHHHHcCCeEEEecCC-----
Confidence 455443332 3445555444 333322 123345566543322210
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC-CceEEEEecccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP-EASYLYYCDNETVD 286 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~-~t~~V~~thnET~t 286 (621)
..| .+++|++ ++ .+++ ++++|++++..|.+
T Consensus 140 -------------------------~~~--~~d~~~l---------------------~~-~l~~~~~~~v~~~~~~npt 170 (367)
T 3euc_A 140 -------------------------ADF--TLDRGAM---------------------LA-AMAEHQPAIVYLAYPNNPT 170 (367)
T ss_dssp -------------------------TTS--CCCHHHH---------------------HH-HHHHHCCSEEEEESSCTTT
T ss_pred -------------------------CCC--CCCHHHH---------------------HH-HhhccCCCEEEEcCCCCCC
Confidence 000 0112221 00 1333 78999999999999
Q ss_pred cccccc--------ccccC--CCcEEEecccccCCC--cc-cccccc--eEEeccccccCCCc--cEEEEEchhHHhhhC
Q psy8733 287 GVEFNY--------IPDSQ--GIPLVSDMSSNFLSR--KF-DVSKFG--VIIAGAQKNIGPAG--ITVVIVREDLLEYAL 349 (621)
Q Consensus 287 Gv~~p~--------i~~~~--g~llvvDavSs~G~~--pI-Dv~~~g--vl~asaqK~lGP~G--lg~livr~~ll~~~~ 349 (621)
|+..+. +++++ |+++|+|.+++.... .+ .++.++ +++.|.+|+ |++| +|+++.++++.+++.
T Consensus 171 G~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~ 249 (367)
T 3euc_A 171 GNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLD 249 (367)
T ss_dssp CCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHG
T ss_pred CCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHH
Confidence 999763 35678 999999999774321 11 333444 778899999 7666 789999999887663
Q ss_pred CCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 350 PITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 350 ~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.. ...+++|....+++.++|+. .. .++.+.++.+++.+++++.|++++|+.
T Consensus 250 ~~--------------~~~~~~~~~~~~a~~~~l~~--~~-~~~~~~~~~~~~~~~l~~~l~~~~g~~ 300 (367)
T 3euc_A 250 KV--------------RPPYNVNVLTEATALFALEH--VA-VLDEQAAQLRAERSRVAEGMAAHGGVT 300 (367)
T ss_dssp GG--------------CCSSCCCHHHHHHHHHHHTT--HH-HHHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred Hh--------------CCCCCCCHHHHHHHHHHhcC--HH-HHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 21 11345777888888888876 22 478899999999999999999886554
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=165.99 Aligned_cols=266 Identities=12% Similarity=0.046 Sum_probs=165.3
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHH-hhccCCCcc-ccccc------ccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEc
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLL-DYESTGISV-MEMSH------RSADYTKINNDTQAALRELLNVPNNYKILFLQ 121 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~-~~~~~g~sv-~e~sh------rs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~ 121 (621)
..+|++++|.+++|++|+++|..+.. .|. .+.+. .+..| .++.+.++.+++|+.+++++|++.+ ++|+
T Consensus 80 ~~~yld~aa~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~~~t- 155 (456)
T 2z67_A 80 TDKDPKSVRIGEREARTYSKIHEELSSGFC-HGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH--AIAT- 155 (456)
T ss_dssp GGGCTTCEECSSCCCCCSCHHHHHHTTTCT-TCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE--EEEE-
T ss_pred ccccccccccccccccccccccCccccccC-CCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC--EEEe-
Confidence 45899999999999999999887531 121 11110 01111 1335788999999999999999863 7776
Q ss_pred CCcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecc
Q psy8733 122 GGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPK 201 (621)
Q Consensus 122 gggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~ 201 (621)
+|||+ +.|+++. .+ ..+.. +++.+.+... .|.. ..+.++..|...+..+.
T Consensus 156 ~g~te-----~a~~~al---------------------~~-~~~~~-~~~~vi~~~~-~h~s-~~~~~~~~G~~~~~v~~ 205 (456)
T 2z67_A 156 PISTG-----MSISLCL---------------------SA-ARKKY-GSNVVIYPYA-SHKS-PIKAVSFVGMNMRLVET 205 (456)
T ss_dssp SSCHH-----HHHHHHH---------------------HH-HHHHH-CCCEEEEECC-CCHH-HHHHHHHTTCEEEEECC
T ss_pred CcHHH-----HHHHHHH---------------------HH-HHHhc-CCCEEEEECC-CcHH-HHHHHHHcCCCceEEEE
Confidence 56886 2333220 00 01111 2232333333 2322 23455566764332221
Q ss_pred cccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc-CC--CCCceEEE
Q psy8733 202 VSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW-NR--DPEASYLY 278 (621)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l-~i--~~~t~~V~ 278 (621)
. + ++..| .+++|+++ +.+ .- .+++.+|.
T Consensus 206 ~----------~-----------------~~~~~--~~d~~~l~--------------------~~i~~~~~~~~~~~vv 236 (456)
T 2z67_A 206 V----------L-----------------DGDRV--YVPVEDIE--------------------NAIKKEIELGNRPCVL 236 (456)
T ss_dssp E----------E-----------------ETTEE--ECCHHHHH--------------------HHHHHHHHTTCCEEEE
T ss_pred e----------c-----------------cCCCC--CcCHHHHH--------------------HHHHHHhhCCCeEEEE
Confidence 0 0 00000 12222210 011 00 13677787
Q ss_pred Eecccccccccccc-----ccccCCCcEEEe---cccccCCCccccccc----ceEEecccccc-CCCccEEEEEc-hhH
Q psy8733 279 YCDNETVDGVEFNY-----IPDSQGIPLVSD---MSSNFLSRKFDVSKF----GVIIAGAQKNI-GPAGITVVIVR-EDL 344 (621)
Q Consensus 279 ~thnET~tGv~~p~-----i~~~~g~llvvD---avSs~G~~pIDv~~~----gvl~asaqK~l-GP~Glg~livr-~~l 344 (621)
.+...|.+|...|+ +++++|++++|| +.|++|..|++++.+ |++++|+||++ ||.|+|+++++ +++
T Consensus 237 ~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~ 316 (456)
T 2z67_A 237 STLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEF 316 (456)
T ss_dssp EESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHH
T ss_pred EeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHH
Confidence 88888899999996 456789999999 667777777776543 59999999997 59999999995 677
Q ss_pred HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 345 LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 345 l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++++.+ .|. +....+| +.++.+++..+.+. |++++.++..++++++++.|.+++
T Consensus 317 ~~~l~~---~~~--------g~~~~~~----~~~~~aal~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~~ 370 (456)
T 2z67_A 317 IKEISL---SYP--------GRASATP----VVNTLVSLLSMGSK-NYLELVKNQKNSKKLLDELLNDLS 370 (456)
T ss_dssp HHHHHT---TSC--------SCBCSHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCc---CCC--------CCCCCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 776632 221 1112222 55666778888777 899999999999999999999884
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-14 Score=144.92 Aligned_cols=246 Identities=14% Similarity=0.120 Sum_probs=154.6
Q ss_pred ceeccCC--CCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 52 VINFGAG--PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 52 ~~lf~aG--Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
++.|+.| |.+.|++|++++.+.+.+. +.+.....+. ...+.|+.+++++|++.+ +|+|+ +|||+
T Consensus 28 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~~y~~~------~~~~lr~~la~~~g~~~~-~i~~t-~g~~~--- 93 (360)
T 3hdo_A 28 WIKLNTNENPYPPSPEVVKAILEELGPD---GAALRIYPSA------SSQKLREVAGELYGFDPS-WIIMA-NGSDE--- 93 (360)
T ss_dssp SEECSSCCCSSCCCHHHHHHHHHHHTTT---CGGGGSCCCS------SCHHHHHHHHHHHTCCGG-GEEEE-SSHHH---
T ss_pred eeeccCCCCCCCCCHHHHHHHHHHHhcc---cchhhcCCCC------chHHHHHHHHHHhCcCcc-eEEEc-CCHHH---
Confidence 3444433 3467899999999987542 0001101111 135789999999998554 68886 67888
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
+++++ +..++.+||++.+..+++.+ +...++..|...+..+..
T Consensus 94 --al~~~--------------------------~~~l~~~gd~Vl~~~p~~~~--~~~~~~~~g~~~~~v~~~------- 136 (360)
T 3hdo_A 94 --VLNNL--------------------------IRAFAAEGEEIGYVHPSYSY--YGTLAEVQGARVRTFGLT------- 136 (360)
T ss_dssp --HHHHH--------------------------HHHHCCTTCEEEEESSSCTH--HHHHHHHHTCEEEEECBC-------
T ss_pred --HHHHH--------------------------HHHHhCCCCEEEEcCCChHH--HHHHHHHCCCEEEEeeCC-------
Confidence 44443 33334455555444444333 334566777643322210
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
.+ ..+ +.+....++++|.+++..|.+|..
T Consensus 137 -----------------------------------------------~~-~~~---~~l~~~~~~~~v~i~~p~nptG~~ 165 (360)
T 3hdo_A 137 -----------------------------------------------GD-FRI---AGFPERYEGKVFFLTTPNAPLGPS 165 (360)
T ss_dssp -----------------------------------------------TT-SSB---TTCCSSBCSSEEEEESSCTTTCCC
T ss_pred -----------------------------------------------CC-CCH---HHHHhhcCCCEEEEeCCCCCCCCC
Confidence 00 011 111111235699999999999999
Q ss_pred ccc-----ccccCCCcEEEecccccC--CCcccc-cccc--eEEeccccccCCCc--cEEEEEchhHHhhhCCCCCceee
Q psy8733 290 FNY-----IPDSQGIPLVSDMSSNFL--SRKFDV-SKFG--VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFH 357 (621)
Q Consensus 290 ~p~-----i~~~~g~llvvDavSs~G--~~pIDv-~~~g--vl~asaqK~lGP~G--lg~livr~~ll~~~~~~~P~~ld 357 (621)
.|. +++.+|+++|+|.+++.. ...+++ +.++ +++.|.+|++|++| +|+++.++++.+++....
T Consensus 166 ~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~----- 240 (360)
T 3hdo_A 166 FPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIR----- 240 (360)
T ss_dssp CCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHS-----
T ss_pred cCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhC-----
Confidence 985 456789999999998842 222332 2233 77889999998766 699999998887653210
Q ss_pred ccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 358 FKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 358 ~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
...++|....+++.++|+. .. .++.+.++.+++.+++++.|+++ |+.
T Consensus 241 ---------~~~~~~~~~~~a~~~~l~~--~~-~~~~~~~~~~~~~~~l~~~L~~~-~~~ 287 (360)
T 3hdo_A 241 ---------DHYNLDRLAQAACVAALRD--QA-YLSECCRRIRETREWFTTELRSI-GYD 287 (360)
T ss_dssp ---------CSCCSCHHHHHHHHHHHHC--HH-HHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred ---------CCCCCCHHHHHHHHHHhcC--HH-HHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence 1245777788888888774 22 47888999999999999999887 343
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-13 Score=152.54 Aligned_cols=146 Identities=14% Similarity=0.059 Sum_probs=110.6
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC-----------Ccccccccc--eEEecccccc-
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS-----------RKFDVSKFG--VIIAGAQKNI- 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~-----------~pIDv~~~g--vl~asaqK~l- 330 (621)
+++++++|.+++..|.+|...|+ +++++|+++|+|.+.+.+. .+++....+ +++++.||++
T Consensus 236 i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~ 315 (514)
T 3mad_A 236 ITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGY 315 (514)
T ss_dssp CCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTC
T ss_pred hccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccC
Confidence 55689999999999999999886 4568899999999866442 256655554 8999999996
Q ss_pred CCCccEEEEEchhHHhhhCCCCCceeeccc-cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 331 GPAGITVVIVREDLLEYALPITPTVFHFKI-NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 331 GP~Glg~livr~~ll~~~~~~~P~~ld~~~-~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
||.|+|+++++++.+.+..... ..+|.. ........+|++...+.++.++++.+... |++++.++..++++++++.
T Consensus 316 ~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~-~~~~~~~~~~~~~~~l~~~ 392 (514)
T 3mad_A 316 GAKGTSVILYRRPDLLHYQYFI--AADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE-GYLDATRRILQAADRLKAG 392 (514)
T ss_dssp CCSSCEEEEESSHHHHTTTCEE--ESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCHHHhcccccc--ccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHH
Confidence 6999999999998875432110 001111 01112345688888889999999999887 8999999999999999999
Q ss_pred HHccCCccc
Q psy8733 410 IDNSDKFYE 418 (621)
Q Consensus 410 L~~~~g~~~ 418 (621)
|++++|+..
T Consensus 393 L~~~~g~~~ 401 (514)
T 3mad_A 393 VRAIPSLKI 401 (514)
T ss_dssp HHTSTTCEE
T ss_pred HhhCCCeEE
Confidence 998876643
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-14 Score=154.70 Aligned_cols=144 Identities=10% Similarity=-0.038 Sum_probs=102.5
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc--------ccccceEEeccccccC-CCccEEEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD--------VSKFGVIIAGAQKNIG-PAGITVVI 339 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID--------v~~~gvl~asaqK~lG-P~Glg~li 339 (621)
+.+|..++.+|.+|...|+ +++++|++++||++++.+....+ ++..|.+.+++|||++ |.|.|+++
T Consensus 242 ~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~ 321 (481)
T 4e1o_A 242 PVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFW 321 (481)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred cEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEE
Confidence 6789999999999999886 45689999999999887643221 1223789999999996 99999999
Q ss_pred EchhHH-hhhCCCCCceeeccccc-----cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 340 VREDLL-EYALPITPTVFHFKINA-----DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 340 vr~~ll-~~~~~~~P~~ld~~~~~-----~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++++.+ .+.....+.|+...... .......+-+ +.+..+..+++.+..+ |++++.++..++++++++.|.++
T Consensus 322 ~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~ 399 (481)
T 4e1o_A 322 VKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVK-NLQAHVRHGTEMAKYFESLVRND 399 (481)
T ss_dssp ESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCC-ccHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 998764 33323334443211100 0001111211 3456677788888777 89999999999999999999999
Q ss_pred CCcccC
Q psy8733 414 DKFYEC 419 (621)
Q Consensus 414 ~g~~~~ 419 (621)
+||.+.
T Consensus 400 ~g~~~~ 405 (481)
T 4e1o_A 400 PSFEIP 405 (481)
T ss_dssp TTEECC
T ss_pred CCeEEe
Confidence 888764
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-14 Score=149.21 Aligned_cols=247 Identities=12% Similarity=0.126 Sum_probs=158.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhC-----CCCCCEEEEEcCCcchhhhHHHHH
Q psy8733 60 AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLN-----VPNNYKILFLQGGGTGMFAAVAMN 134 (621)
Q Consensus 60 s~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~-----~p~~yeI~f~~gggT~~~~a~alN 134 (621)
.+.|++|++++.+.+.+....+.+ . ..-+.+.|+.++++++ +..+ +|+|+ +|||+ |++
T Consensus 70 ~~~~~~v~~a~~~~~~~~~~~~y~-----~-----~~g~~~lr~~la~~~~~~~~~~~~~-~v~~t-~g~t~-----al~ 132 (427)
T 3dyd_A 70 LPTDPEVTQAMKDALDSGKYNGYA-----P-----SIGFLSSREEIASYYHCPEAPLEAK-DVILT-SGCSQ-----AID 132 (427)
T ss_dssp SCCCHHHHHHHHHHHHHCCSSSCC-----C-----TTCCHHHHHHHHHHHCBTTBCCCGG-GEEEE-SSHHH-----HHH
T ss_pred CCCCHHHHHHHHHHHhcCcCCCCC-----C-----CCCcHHHHHHHHHHHhhcCCCCChH-HEEEe-cCcHH-----HHH
Confidence 378999999999988652211110 0 1235678899999998 5443 68776 67888 333
Q ss_pred HhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCC
Q psy8733 135 LISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW 214 (621)
Q Consensus 135 lla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~ 214 (621)
+ ++..+..+|+++.+..+++.+. ...++..|...+..+..
T Consensus 133 ~--------------------------~~~~l~~~gd~vl~~~p~~~~~--~~~~~~~g~~~~~~~~~------------ 172 (427)
T 3dyd_A 133 L--------------------------CLAVLANPGQNILVPRPGFSLY--KTLAESMGIEVKLYNLL------------ 172 (427)
T ss_dssp H--------------------------HHHHHCCTTCEEEEEESCCTHH--HHHHHHTTCEEEEEEEE------------
T ss_pred H--------------------------HHHHhcCCCCEEEEcCCCchhH--HHHHHHcCCEEEEEecc------------
Confidence 3 3334455666666666655543 44566777643322110
Q ss_pred CCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccccc---
Q psy8733 215 NRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN--- 291 (621)
Q Consensus 215 ~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p--- 291 (621)
+ ...|+ ++.+++ + -.+++++++|.+++..|.||+..+
T Consensus 173 ------------~----~~~~~--~d~~~l---------------------~-~~l~~~~~~v~i~~p~nptG~~~~~~~ 212 (427)
T 3dyd_A 173 ------------P----EKSWE--IDLKQL---------------------E-YLIDEKTACLIVNNPSNPCGSVFSKRH 212 (427)
T ss_dssp ------------G----GGTTE--ECHHHH---------------------H-SSCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred ------------c----ccCCC--CCHHHH---------------------H-HHhccCCCEEEEECCCCCCCCCCCHHH
Confidence 0 00011 122221 0 124567899999999999999988
Q ss_pred c-----ccccCCCcEEEecccccC----CCcccccccc-----eEEeccccccCCCc--cEEEEEch-------hHHhhh
Q psy8733 292 Y-----IPDSQGIPLVSDMSSNFL----SRKFDVSKFG-----VIIAGAQKNIGPAG--ITVVIVRE-------DLLEYA 348 (621)
Q Consensus 292 ~-----i~~~~g~llvvDavSs~G----~~pIDv~~~g-----vl~asaqK~lGP~G--lg~livr~-------~ll~~~ 348 (621)
+ +++++|+++|+|.+++.+ ....++..++ +++.|.+|++|.+| +|++++++ ++.+.+
T Consensus 213 l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l 292 (427)
T 3dyd_A 213 LQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGL 292 (427)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHH
Confidence 3 356899999999999863 3333444432 66779999998888 79999884 343332
Q ss_pred CCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 349 LPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 349 ~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.. + .....+||.....++.++|+...+. .++.+.++.+++.+++++.|++++|+.
T Consensus 293 ~~-------~------~~~~~~~~~~~~~a~~~~L~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~ 347 (427)
T 3dyd_A 293 VK-------L------SQRILGPCTIVQGALKSILCRTPGE-FYHNTLSFLKSNADLCYGALAAIPGLR 347 (427)
T ss_dssp HH-------H------HHHHCCSCHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred HH-------H------HhccCCCCHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 11 0 1124577888888888888754333 578888999999999999999886553
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-14 Score=151.55 Aligned_cols=147 Identities=8% Similarity=0.046 Sum_probs=102.8
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Ccc--------cccc-cc--eEEeccc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKF--------DVSK-FG--VIIAGAQ 327 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pI--------Dv~~-~g--vl~asaq 327 (621)
++++++|.+++..|.||+..+. +++++|+++|+|.+++.+. .++ ++.+ .+ +++.|.+
T Consensus 180 ~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 259 (437)
T 3g0t_A 180 TGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSS 259 (437)
T ss_dssp TTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEEST
T ss_pred cCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCc
Confidence 5678999999999999999873 3467999999999998633 232 4443 44 7888999
Q ss_pred cccCCCc--cEEEEEchhHHh-hhCCCCCceee----cc-ccccCCCccCCchHHHHHHHHHHHHHHHhh-CCHHHHHHH
Q psy8733 328 KNIGPAG--ITVVIVREDLLE-YALPITPTVFH----FK-INADNNSVYNTPPTFVVHVIQRVFAWIKRQ-GGLAKMEQN 398 (621)
Q Consensus 328 K~lGP~G--lg~livr~~ll~-~~~~~~P~~ld----~~-~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~-gGl~~i~~r 398 (621)
|++|++| +|+++.++++++ ......+.+.. +. ..........+++....+++.++|+...+. ..++++.++
T Consensus 260 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 339 (437)
T 3g0t_A 260 KAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIE 339 (437)
T ss_dssp TTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred cCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHH
Confidence 9999887 899999999887 52111111000 00 000011234677888888888888876431 128999999
Q ss_pred HHHHHHHHHHHHHccCCccc
Q psy8733 399 SLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 399 ~~~la~~L~e~L~~~~g~~~ 418 (621)
.+++.+++++.|+++ |+..
T Consensus 340 ~~~~~~~l~~~L~~~-g~~~ 358 (437)
T 3g0t_A 340 YGRKARIMKKMFLDN-GFNI 358 (437)
T ss_dssp HHHHHHHHHHHHHTT-TEEE
T ss_pred HHHHHHHHHHHHHHc-CCEE
Confidence 999999999999987 4543
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-13 Score=143.77 Aligned_cols=253 Identities=9% Similarity=0.044 Sum_probs=153.3
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
..+..+|..+|++|++++.+.+.+.. |.. ...+++.|+.++++++++ +++|+ ++||+ |
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~~---~~~~~~l~~~la~~~~~~---~~i~~-~sGt~-----a 61 (390)
T 3b8x_A 4 INYPLASSTWDDLEYKAIQSVLDSKM----------FTM---GEYVKQYETQFAKTFGSK---YAVMV-SSGST-----A 61 (390)
T ss_dssp -CBCSCCCCCCHHHHHHHHHHHHHTC----------CSS---CHHHHHHHHHHHHHHTCS---EEEEE-SCHHH-----H
T ss_pred eeccCCCCCCCHHHHHHHHHHHHcCC----------CCC---ChHHHHHHHHHHHHHCCC---cEEEE-CCHHH-----H
Confidence 34567899999999999999875421 111 246788999999999986 46766 67888 5
Q ss_pred HHHhhhcc------CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccc
Q psy8733 133 MNLISSSM------NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 133 lNlla~~~------~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
++++...+ ++++||+|++... .| .+. ...++..|...+..+..
T Consensus 62 ~~~al~~~~~~~~~~~~~g~~Vi~~~~----~~---------------------~~~--~~~~~~~g~~~~~~~~~---- 110 (390)
T 3b8x_A 62 NLLMIAALFFTKKPRLKKGDEIIVPAV----SW---------------------STT--YYPLQQYGLRVKFVDID---- 110 (390)
T ss_dssp HHHHHHHTTSSSSCSCCTTCEEEEESS----SC---------------------HHH--HHHHHHTTCEEEEECBC----
T ss_pred HHHHHHHHHhhhhcCCCCcCEEEECCC----Cc---------------------HHH--HHHHHHcCCEEEEEecC----
Confidence 55544444 4667777776653 22 211 11234456533222210
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
+ ..|. ++++++ + -.+++++++|.++| .+
T Consensus 111 ------~-------------------~~~~--~d~~~l---------------------~-~~i~~~~~~v~~~~---~~ 138 (390)
T 3b8x_A 111 ------I-------------------NTLN--IDIESL---------------------K-EAVTDSTKAILTVN---LL 138 (390)
T ss_dssp ------T-------------------TTCS--BCHHHH---------------------H-HHCCTTEEEEEEEC---GG
T ss_pred ------c-------------------cccC--cCHHHH---------------------H-HHhCcCCeEEEEEC---Cc
Confidence 0 0000 111121 1 12456799999985 46
Q ss_pred cccccc-----ccccCCCcEEEecccccCCCcccccccc----eEE---eccccccCCCccEEEEEch-hHHhhhCCCCC
Q psy8733 287 GVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG----VII---AGAQKNIGPAGITVVIVRE-DLLEYALPITP 353 (621)
Q Consensus 287 Gv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g----vl~---asaqK~lGP~Glg~livr~-~ll~~~~~~~P 353 (621)
|...|+ +++++|+++|+|++|++|..+ +...+| +.. +++||..++.| |+++.++ ++.+++.+...
T Consensus 139 g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~ 216 (390)
T 3b8x_A 139 GNPNNFDEINKIIGGRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRA 216 (390)
T ss_dssp GCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTB
T ss_pred cChhhHHHHHHHHHHcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHh
Confidence 877775 457899999999999999876 665554 222 34555435677 9999886 55444332111
Q ss_pred -ce-ee---------------ccc---cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 354 -TV-FH---------------FKI---NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 354 -~~-ld---------------~~~---~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.+ .+ +.. ....+..+.|+++.+++++.. +++ ++.+.++.+++++++++.|.++
T Consensus 217 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l~~------l~~~~~~~~~~~~~l~~~L~~~ 289 (390)
T 3b8x_A 217 HGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-LKK------LPRFISVRRKNAEYFLDKFKDH 289 (390)
T ss_dssp TTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHhcCC
Confidence 00 00 000 001123345899988888775 554 4566788888999999999988
Q ss_pred CCcccC
Q psy8733 414 DKFYEC 419 (621)
Q Consensus 414 ~g~~~~ 419 (621)
+|+.+.
T Consensus 290 ~~~~~~ 295 (390)
T 3b8x_A 290 PYLDVQ 295 (390)
T ss_dssp SSEEEC
T ss_pred CCcccC
Confidence 776544
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-14 Score=145.36 Aligned_cols=254 Identities=13% Similarity=0.105 Sum_probs=148.4
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
.++.++.|...+++ +.+++.+.+..... .. .....+.|+.++++++.+ +++|+ +|||+
T Consensus 7 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~--------~~-----~~~~~~l~~~la~~~~~~---~~~~~-~~gt~---- 64 (374)
T 3uwc_A 7 PYSYLERQFADIEP-YLNDLREFIKTADF--------TL-----GAELEKFEKRFAALHNAP---HAIGV-GTGTD---- 64 (374)
T ss_dssp CSCCHHHHTSSCHH-HHHHHHHHHHHTCC--------SS-----CHHHHHHHHHHHHHTTCS---EEEEE-SCHHH----
T ss_pred eeeccccCCCCchH-HHHHHHHHHHcCCc--------cc-----ChhHHHHHHHHHHHhCCC---cEEEe-CCHHH----
Confidence 35667777777777 99998887643210 11 246778999999999986 57776 66888
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
|++++...+++++||+|++.. .++.+. ...++..|...+..+.
T Consensus 65 -a~~~~~~~~~~~~gd~v~~~~-------------------------~~~~~~--~~~~~~~g~~~~~~~~--------- 107 (374)
T 3uwc_A 65 -ALAMSFKMLNIGAGDEVITCA-------------------------NTFIAS--VGAIVQAGATPVLVDS--------- 107 (374)
T ss_dssp -HHHHHHHHTTCCTTCEEEEES-------------------------SSCHHH--HHHHHHTTCEEEEECB---------
T ss_pred -HHHHHHHHcCCCCCCEEEECC-------------------------CccHHH--HHHHHHcCCEEEEEec---------
Confidence 454444444455555555543 333332 2345566654322211
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
+..|. +++++ .+ -.+++++++|. .+ +.+|...
T Consensus 108 ---------------------~~~~~--~d~~~---------------------l~-~~~~~~~~~v~-~~--n~~G~~~ 139 (374)
T 3uwc_A 108 ---------------------ENGYV--IDPEK---------------------IE-AAITDKTKAIM-PV--HYTGNIA 139 (374)
T ss_dssp ---------------------CTTSS--BCGGG---------------------TG-GGCCTTEEEEC-CB--CGGGCCC
T ss_pred ---------------------CCCCC--cCHHH---------------------HH-HhCCCCceEEE-Ee--CCcCCcC
Confidence 00000 11111 11 12456788877 33 4679988
Q ss_pred cc-----ccccCCCcEEEecccccCCCccccccc----ceEEeccc--cccCCCc-cEEEEEch-hHHhhhCCCCCceee
Q psy8733 291 NY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF----GVIIAGAQ--KNIGPAG-ITVVIVRE-DLLEYALPITPTVFH 357 (621)
Q Consensus 291 p~-----i~~~~g~llvvDavSs~G~~pIDv~~~----gvl~asaq--K~lGP~G-lg~livr~-~ll~~~~~~~P~~ld 357 (621)
|+ +++++|+++|+|.+++.|.. ++...+ |+++.|.| |++|++| .|+++.++ ++.+++.+.......
T Consensus 140 ~~~~i~~~~~~~~~~li~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 218 (374)
T 3uwc_A 140 DMPALAKIAKKHNLHIVEDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLI 218 (374)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEE
T ss_pred CHHHHHHHHHHcCCEEEEeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCcc
Confidence 85 45689999999999998875 444433 38888866 9998755 55566554 455544321110000
Q ss_pred ccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC-ccc
Q psy8733 358 FKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK-FYE 418 (621)
Q Consensus 358 ~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g-~~~ 418 (621)
..... ... +.+. .+..+.+++.+.... +++.+.++.+++++++++.|.++++ +..
T Consensus 219 -~~~~~--~~~-~~~~-~~~~~~aa~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 274 (374)
T 3uwc_A 219 -NRDVC--VEY-GINC-RMDTIQAVIANRLMN-QLETITEKRRGIAHLYDQSFVDLSEFIDV 274 (374)
T ss_dssp -ETTEE--SSC-CCBC-BCCHHHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHTGGGTTTEEC
T ss_pred -ccCcc--ccc-cccC-CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCeEEe
Confidence 00000 000 1111 223445556665555 7899999999999999999998876 543
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-13 Score=151.81 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=99.9
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc-----cccc---ccceEEeccccccC-CCccEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK-----FDVS---KFGVIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p-----IDv~---~~gvl~asaqK~lG-P~Glg~l 338 (621)
++++|.+++..|.+|...|+ +++++|++++||++++.+..+ .+++ ..|++++++|||+| |.|+|++
T Consensus 245 ~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l 324 (504)
T 2okj_A 245 VPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI 324 (504)
T ss_dssp EEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEE
Confidence 58999999999999999886 456889999999999888754 3443 44699999999997 9999999
Q ss_pred EEchh-HHhhhCCCCCceee-----------cccc-ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q psy8733 339 IVRED-LLEYALPITPTVFH-----------FKIN-ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405 (621)
Q Consensus 339 ivr~~-ll~~~~~~~P~~ld-----------~~~~-~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~ 405 (621)
+++++ ++++.....+.|+. +... .+...++++. .++ .+++.+... |++++.++..+++++
T Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l---~~~---a~l~~lg~~-g~~~~~~~~~~~a~~ 397 (504)
T 2okj_A 325 LVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIF---KFW---LMWKAKGTV-GFENQINKCLELAEY 397 (504)
T ss_dssp EESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHH---HHH---HHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHH---HHH---HHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 99974 66543222333321 1110 0112223322 222 335555566 799999999999999
Q ss_pred HHHHHHccCCcccC
Q psy8733 406 LYQEIDNSDKFYEC 419 (621)
Q Consensus 406 L~e~L~~~~g~~~~ 419 (621)
+++.|.+++|+.+.
T Consensus 398 l~~~L~~~~~~~~~ 411 (504)
T 2okj_A 398 LYAKIKNREEFEMV 411 (504)
T ss_dssp HHHHHTTCTTEEES
T ss_pred HHHHHhcCCCEEEE
Confidence 99999998877654
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-15 Score=154.75 Aligned_cols=249 Identities=14% Similarity=0.120 Sum_probs=148.4
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHH
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAV 131 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~ 131 (621)
.++++.++.++++++++++.+.+..... . ....+++.|+.++++++.+ +++|+ +|||+
T Consensus 5 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~--------~-----~~~~~~~l~~~la~~~~~~---~~i~~-~sgt~----- 62 (373)
T 3frk_A 5 FASFKPMHDEIEYEIKFKFEEIYKRNWF--------I-----LGDEDKKFEQEFADYCNVN---YCIGC-GNGLD----- 62 (373)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHTCC--------S-----SSHHHHHHHHHHHHHHTSS---EEEEE-SCHHH-----
T ss_pred ccCCCcccCCCCHHHHHHHHHHHHCCCc--------c-----CCchHHHHHHHHHHHhCCC---eEEEe-CCHHH-----
Confidence 3455666667788999999888743210 1 1256889999999999985 57877 67898
Q ss_pred HHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCC
Q psy8733 132 AMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQ 211 (621)
Q Consensus 132 alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~ 211 (621)
|++++...+++++||+|++... ++.+- ...++..|...+..+..
T Consensus 63 al~~~l~~l~~~~gd~Vi~~~~-------------------------~~~~~--~~~~~~~g~~~~~~~~~--------- 106 (373)
T 3frk_A 63 ALHLILKGYDIGFGDEVIVPSN-------------------------TFIAT--ALAVSYTGAKPIFVEPD--------- 106 (373)
T ss_dssp HHHHHHHHTTCCTTCEEEEETT-------------------------SCTHH--HHHHHHHSCEEEEECEE---------
T ss_pred HHHHHHHHcCCCCcCEEEECCC-------------------------CcHHH--HHHHHHcCCEEEEEecc---------
Confidence 5666555556677777776643 22221 22345566543322210
Q ss_pred CCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccccc
Q psy8733 212 STWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291 (621)
Q Consensus 212 ~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p 291 (621)
+ ..|. +++++ .+ -.+++++++|..+ +.+|...|
T Consensus 107 -~-------------------~~~~--~d~~~---------------------l~-~~l~~~~~~v~~~---n~~G~~~~ 139 (373)
T 3frk_A 107 -I-------------------RTYN--IDPSL---------------------IE-SAITEKTKAIIAV---HLYGQPAD 139 (373)
T ss_dssp -T-------------------TTTE--ECGGG---------------------TG-GGCCTTEEEEEEE---CCTTCCCC
T ss_pred -c-------------------cccC--cCHHH---------------------HH-HhcCCCCeEEEEE---CCCcCccc
Confidence 0 0000 11111 11 1355688888833 36799888
Q ss_pred c-----ccccCCCcEEEecccccCCCcccccccc----eEEec--cccccCCCc-cEEEEEch-hHHhhhCCCCC--cee
Q psy8733 292 Y-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG----VIIAG--AQKNIGPAG-ITVVIVRE-DLLEYALPITP--TVF 356 (621)
Q Consensus 292 ~-----i~~~~g~llvvDavSs~G~~pIDv~~~g----vl~as--aqK~lGP~G-lg~livr~-~ll~~~~~~~P--~~l 356 (621)
+ +++++|+++|+|+++++|.. ++.+.++ ++++| +||++|++| .|+++.++ ++.+++.+... ...
T Consensus 140 l~~i~~l~~~~~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~ 218 (373)
T 3frk_A 140 MDEIKRIAKKYNLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEK 218 (373)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSB
T ss_pred HHHHHHHHHHcCCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCccc
Confidence 5 45678999999999999887 6655543 66666 889998754 45555554 45554432110 000
Q ss_pred eccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 357 HFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 357 d~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
.+.. ...+..+ .+..+.+++...... +++.+.++.+++++++++.|.+++
T Consensus 219 ~~~~-~~~g~~~------~~~~~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 268 (373)
T 3frk_A 219 KYHH-IYKGFNS------RLDELQAGFLRVKLK-YLDKWNEERRKIAQKYIAGINNPN 268 (373)
T ss_dssp TTBC-CSCCCBC------CCCHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHCCCTT
T ss_pred CCcc-ccccccC------CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCc
Confidence 0000 0001111 123344555555444 788999999999999999998876
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-13 Score=141.79 Aligned_cols=135 Identities=11% Similarity=0.170 Sum_probs=99.5
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----cccccc----c--ceEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----KFDVSK----F--GVIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----pIDv~~----~--gvl~asaqK~lG 331 (621)
+++++++|.+++.+|.||...+. +++++|+++|+|.+++.+.. +.++.. . ++++.|.+|++|
T Consensus 157 l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 236 (389)
T 1gd9_A 157 VTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA 236 (389)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT
T ss_pred cCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcC
Confidence 44578999999999999998862 34679999999999987754 233332 2 388999999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
++| +|++++++++++++.+. ......+++....+++.++|+...+..+++.+.++.+++.+++++.
T Consensus 237 ~~G~r~G~~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (389)
T 1gd9_A 237 MTGWRLGFVAAPSWIIERMVKF------------QMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKR 304 (389)
T ss_dssp CGGGCCEEEECCHHHHHHHHHH------------HTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceEEEEECHHHHHHHHHH------------HhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 889 69999999888765321 0112345666777777777775443214788889999999999999
Q ss_pred HHccCCcc
Q psy8733 410 IDNSDKFY 417 (621)
Q Consensus 410 L~~~~g~~ 417 (621)
|+++ |+.
T Consensus 305 L~~~-g~~ 311 (389)
T 1gd9_A 305 LNEM-GLP 311 (389)
T ss_dssp HHHT-TCC
T ss_pred HHHc-CCe
Confidence 9887 443
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-14 Score=147.36 Aligned_cols=127 Identities=14% Similarity=0.161 Sum_probs=99.0
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-c--------ccccc-cceEEecccccc-CCCccE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-K--------FDVSK-FGVIIAGAQKNI-GPAGIT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-p--------IDv~~-~gvl~asaqK~l-GP~Glg 336 (621)
++++|.+++..|.+|...|+ +++++|+++|+|.++++|.. + +++.. .++++.|.+|++ |++| |
T Consensus 177 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~g-G 255 (401)
T 1fc4_A 177 RHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-G 255 (401)
T ss_dssp SSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-E
T ss_pred CceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCC-E
Confidence 68899999999999999985 45688999999999986654 2 55543 458899999999 7888 9
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+++.++++++++....+.+ ..-.+++....+++.++++++.+ .+.+.++.+++.+++++.|+++
T Consensus 256 ~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~~ 319 (401)
T 1fc4_A 256 YTAARKEVVEWLRQRSRPY----------LFSNSLAPAIVAASIKVLEMVEA---GSELRDRLWANARQFREQMSAA 319 (401)
T ss_dssp EEEECHHHHHHHHHHCHHH----------HHSCCCCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCHHHHHHHHHhCcCc----------eeCCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999887664211100 01247778888888899998764 3678888999999999999987
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-14 Score=154.92 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=105.7
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc-----ccc---ccceEEeccccccC-CCccEEEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF-----DVS---KFGVIIAGAQKNIG-PAGITVVI 339 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI-----Dv~---~~gvl~asaqK~lG-P~Glg~li 339 (621)
+++|.+++..|.+|...|+ +++++|++++||++++.+.... ++. ..|++++++|||++ |.|.|+++
T Consensus 249 ~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~ 328 (511)
T 3vp6_A 249 PFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAIL 328 (511)
T ss_dssp EEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred cEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEE
Confidence 8899999999999999886 4568999999999999887633 233 33689999999996 99999999
Q ss_pred Echh-HHhhhCCCCCceeeccccc-----c--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 340 VRED-LLEYALPITPTVFHFKINA-----D--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 340 vr~~-ll~~~~~~~P~~ld~~~~~-----~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
++++ ++.+.....+.|+...... . ......+.+ +.+.++..+++.+..+ |++++.++..++++++++.|+
T Consensus 329 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~-~~al~~~~al~~~g~~-gl~~~~~~~~~~a~~l~~~L~ 406 (511)
T 3vp6_A 329 VKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRH-VDIFKFWLMWKAKGTV-GFENQINKCLELAEYLYAKIK 406 (511)
T ss_dssp ESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCC-CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCc-hHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 9876 4555433344443211100 0 001111111 2456777888888777 899999999999999999999
Q ss_pred ccCCcccCc
Q psy8733 412 NSDKFYECP 420 (621)
Q Consensus 412 ~~~g~~~~~ 420 (621)
+.+||.+..
T Consensus 407 ~~pg~~l~~ 415 (511)
T 3vp6_A 407 NREEFEMVF 415 (511)
T ss_dssp SCTTEEESS
T ss_pred cCCCEEEEe
Confidence 998887654
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.59 E-value=8.6e-15 Score=162.18 Aligned_cols=283 Identities=11% Similarity=0.068 Sum_probs=155.2
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHH-HHHHHHHHHhCCCCC-CEEEEEcCCcchhh
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINN-DTQAALRELLNVPNN-YKILFLQGGGTGMF 128 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~-~ar~~La~Ll~~p~~-yeI~f~~gggT~~~ 128 (621)
..+++.|+|..+|++|+++|...+.+..+.|.. ...++.+.++.+.++ .+|+.++++||++.+ +.+.+.++|||.++
T Consensus 55 ~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~-g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An 133 (490)
T 2a7v_A 55 RGLELIASENFCSRAALEALGSCLNNKYSEGYP-GKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPAN 133 (490)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHH
T ss_pred cCceEECCCCCCCHHHHHHHHHHHcCCCccCCC-cccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHH
Confidence 468999999999999999999998775433321 111222334444454 789999999999763 22344456788833
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHH---HHHhCCceeeecccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAE---AEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~---a~~~G~~~~~~~~~~~~ 205 (621)
.+ +-.++ +++||+|++..- .+ .|++.+.+... +...|......+
T Consensus 134 ~~-----al~al-~~pGD~Vl~~~~----~h------------------~g~l~h~~~~~~~~i~~~g~~~~~~~----- 180 (490)
T 2a7v_A 134 LA-----VYTAL-LQPHDRIMGLDL----PD------------------GGHLTHGYMSDVKRISATSIFFESMP----- 180 (490)
T ss_dssp HH-----HHHHH-CCSCEECCC----------------------------------------------------------
T ss_pred HH-----HHHHH-cCCCCEecccCc----cc------------------cccccchhhhcchhHHHcCCeEEEEe-----
Confidence 32 21222 567777766531 00 11121211100 001111000000
Q ss_pred cccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccc
Q psy8733 206 VSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 285 (621)
Q Consensus 206 ~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~ 285 (621)
| . ++ ++...+|+|++ ++.....++++|.++.. .
T Consensus 181 -------------------~-~---vd-~~~~~iD~d~l---------------------e~~l~~~~~klIi~~~s--~ 213 (490)
T 2a7v_A 181 -------------------Y-K---LN-PKTGLIDYNQL---------------------ALTARLFRPRLIIAGTS--A 213 (490)
T ss_dssp -------------------C-C---BC-TTTCSBCHHHH---------------------HHHHHHHCCSEEEECCS--S
T ss_pred -------------------c-c---cc-cccCCcCHHHH---------------------HHHHhhcCCcEEEEcCC--C
Confidence 0 0 00 00001222221 11101135677766543 3
Q ss_pred ccccccc-----ccccCCCcEEEecccccC-----CCcccccccceEEecccccc-CCCccEEEEEchhHHhhhCCC--C
Q psy8733 286 DGVEFNY-----IPDSQGIPLVSDMSSNFL-----SRKFDVSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPI--T 352 (621)
Q Consensus 286 tGv~~p~-----i~~~~g~llvvDavSs~G-----~~pIDv~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~--~ 352 (621)
+|...|+ +++++|+++++|+++.+| ..+.+++..|++++|.||+| ||.| |+++.++++.. ..+. .
T Consensus 214 ~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~-~~~~~~~ 291 (490)
T 2a7v_A 214 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS-GLIFYRKGVKA-VDPKTGR 291 (490)
T ss_dssp CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSC-EEEEEECSEEE-EETTTEE
T ss_pred CCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccccc-hheeeccchhc-ccccccc
Confidence 4666664 567899999999998754 23444555679999999999 6998 99998876321 0000 0
Q ss_pred Cceeecccccc---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 353 PTVFHFKINAD---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 353 P~~ld~~~~~~---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+.+.++....+ .+...++|+...+.++..|++.+.+. +.+...++..+++++|.+.|.+. |+.+
T Consensus 292 ~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~-~~~~~~~~~~~na~~L~~~L~~~-G~~v 358 (490)
T 2a7v_A 292 EIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP-MFREYSLQVLKNARAMADALLER-GYSL 358 (490)
T ss_dssp EEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred hhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHc-CcEE
Confidence 11111211111 23345689999999999999988755 46888889999999999999987 4543
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-13 Score=145.96 Aligned_cols=130 Identities=11% Similarity=0.063 Sum_probs=102.1
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------ccccc-cceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDVSK-FGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv~~-~gvl~asaqK~lGP~Glg~ 337 (621)
++++|.+++..+.+|...|+ +++++|+++|+|.+++.|... +++.. .++++.|.+|++|++| |+
T Consensus 194 ~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g-G~ 272 (427)
T 2w8t_A 194 PAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG-GF 272 (427)
T ss_dssp SCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC-EE
T ss_pred CCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC-CE
Confidence 68999999999999999985 456899999999999988765 55543 3588999999999999 99
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
++.++++++.+.+....+ ...++++...++++.++|+++.+ ++.+.++.+++.+++++.|+++ |+.
T Consensus 273 v~~~~~l~~~l~~~~~~~----------~~~~~~~~~~~aa~~~al~~~~~---~~~~~~~~~~~~~~l~~~L~~~-g~~ 338 (427)
T 2w8t_A 273 VVSNHPKFEAVRLACRPY----------IFTASLPPSVVATATTSIRKLMT---AHEKRERLWSNARALHGGLKAM-GFR 338 (427)
T ss_dssp EEECCTTGGGGGGTCHHH----------HSSCCCCHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHHHHH-TCE
T ss_pred EEeCHHHHHHHHHhcccc----------cccCCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 999999887664321111 01246677788888889998753 5788899999999999999887 353
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-14 Score=148.70 Aligned_cols=257 Identities=9% Similarity=0.021 Sum_probs=146.8
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
.+.++..|+..+|+++++++.+.+..... . .......+.|+.++++++.+ +++|+ +|||+
T Consensus 23 ~~~~l~~~~p~~~~~~~~a~~~~~~~~~~--------~----~~~~~~~~l~~~la~~~~~~---~~i~~-~~gt~---- 82 (391)
T 3dr4_A 23 DLPRISVAAPRLDGNERDYVLECMDTTWI--------S----SVGRFIVEFEKAFADYCGVK---HAIAC-NNGTT---- 82 (391)
T ss_dssp -----CCCCCCCCSSHHHHHHHHHHHTCC--------S----SCSHHHHHHHHHHHHHHTCS---EEEEE-SSHHH----
T ss_pred CCceeccCCCCCCHHHHHHHHHHHHcCCc--------c----CCChHHHHHHHHHHHHhCCC---cEEEe-CCHHH----
Confidence 46788888889999999999988743111 1 01246788999999999986 57776 67888
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
|++++...+++++||+|++.. .++.+. ...++..|...+..+..
T Consensus 83 -al~~~l~~~~~~~gd~vl~~~-------------------------~~~~~~--~~~~~~~g~~~~~~~~~-------- 126 (391)
T 3dr4_A 83 -ALHLALVAMGIGPGDEVIVPS-------------------------LTYIAS--ANSVTYCGATPVLVDND-------- 126 (391)
T ss_dssp -HHHHHHHHHTCCTTCEEEEES-------------------------SSCTHH--HHHHHHTTCEEEEECBC--------
T ss_pred -HHHHHHHHcCCCCcCEEEECC-------------------------CchHHH--HHHHHHCCCEEEEEecC--------
Confidence 455444444455555555543 333332 23345566543322210
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
++ .|. +++++ .+ -.+++++++|.++ +++|...
T Consensus 127 --~~-------------------~~~--~d~~~---------------------l~-~~~~~~~~~v~~~---n~tG~~~ 158 (391)
T 3dr4_A 127 --PR-------------------TFN--LDAAK---------------------LE-ALITPRTKAIMPV---HLYGQIC 158 (391)
T ss_dssp --TT-------------------TCS--BCGGG---------------------SG-GGCCTTEEEECCB---CGGGCCC
T ss_pred --cc-------------------ccC--cCHHH---------------------HH-HhcCCCceEEEEE---CCCCChh
Confidence 00 000 01001 11 1255678888753 4789988
Q ss_pred cc-----ccccCCCcEEEecccccCCCcccc--ccc-c--eEEeccccccCCCccEEEEEchh-HHhhhCCCCC--ceee
Q psy8733 291 NY-----IPDSQGIPLVSDMSSNFLSRKFDV--SKF-G--VIIAGAQKNIGPAGITVVIVRED-LLEYALPITP--TVFH 357 (621)
Q Consensus 291 p~-----i~~~~g~llvvDavSs~G~~pIDv--~~~-g--vl~asaqK~lGP~Glg~livr~~-ll~~~~~~~P--~~ld 357 (621)
|+ +++++|+++|+|++++.|....+. ..+ | +..+++||++++...|+++.+++ +.+++.+... ...+
T Consensus 159 ~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~ 238 (391)
T 3dr4_A 159 DMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPN 238 (391)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTT
T ss_pred hHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCC
Confidence 85 456899999999999998875543 333 3 44555899997534556666544 5554432100 0000
Q ss_pred ccc-cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 358 FKI-NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 358 ~~~-~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
... ....+..+ .+..+.+++.+.... +++.+.++.+++++++++.|.++ |+...
T Consensus 239 ~~~~~~~~g~~~------~~~~l~aa~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 293 (391)
T 3dr4_A 239 RRYWFPIVGFNY------RMTNIQAAIGLAQLE-RVDEHLAARERVVGWYEQKLARL-GNRVT 293 (391)
T ss_dssp STTCCSSCCCBC------BCCHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHGGG-TTSEE
T ss_pred Cccccccccccc------CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcC-Ccccc
Confidence 000 00011111 123344455555555 78999999999999999999988 56543
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-14 Score=147.12 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=98.1
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Ccccccc-----cc--eEEeccccccCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVSK-----FG--VIIAGAQKNIGP 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~~-----~g--vl~asaqK~lGP 332 (621)
+++++|.+++..|.+|...+. +++++|+++|+|.+++.+. .+.++.. .| +++.|.+|++|+
T Consensus 159 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~ 238 (391)
T 3dzz_A 159 PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNL 238 (391)
T ss_dssp TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTC
T ss_pred cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccc
Confidence 689999999999999999652 3568999999999998532 3444433 34 889999999986
Q ss_pred Cc--cEEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 ~G--lg~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+| +|+++.+ +++.+++.. .. ......+++....+++.++++...+ .++.+.++.+++.+++++.
T Consensus 239 ~G~r~G~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~ 305 (391)
T 3dzz_A 239 AALHAACAIIPNPDLRARAEE-------SF----FLAGIGEPNLLAIPAAIAAYEEGHD--WLRELKQVLRDNFAYAREF 305 (391)
T ss_dssp TTTCCEEEECCSHHHHHHHHH-------HH----HHHTCSSCCTTHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHH
T ss_pred cchhheEEEECCHHHHHHHHH-------HH----HhhccCCCCHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHH
Confidence 66 8999997 777765532 00 0112345666777777778776433 3788899999999999999
Q ss_pred HHc-cCCcc
Q psy8733 410 IDN-SDKFY 417 (621)
Q Consensus 410 L~~-~~g~~ 417 (621)
|++ ++|+.
T Consensus 306 l~~~~~~~~ 314 (391)
T 3dzz_A 306 LAKEVPEVK 314 (391)
T ss_dssp HHHHCTTSE
T ss_pred HHhhCCCcE
Confidence 998 66654
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=152.30 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=98.0
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-----ccceEEeccccccC-CCccEEEEEc
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-----KFGVIIAGAQKNIG-PAGITVVIVR 341 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-----~~gvl~asaqK~lG-P~Glg~livr 341 (621)
++++|.++ ++..|...++ +++++|+++|+|.++++|..+.+.. ..|++++|.||++| |.| |+++.+
T Consensus 163 ~~~~v~~~--~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~ 239 (405)
T 2vi8_A 163 RPKLIVAA--AAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQ 239 (405)
T ss_dssp CCSEEEEC--CSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEEC
T ss_pred CCeEEEEe--CCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEc
Confidence 57777764 3445665554 4567899999999999764433332 34588999999996 999 999999
Q ss_pred hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 342 EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 342 ~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
+++.+++.+. .....++||+...+.++.++++++.+. +++++.++.+++++++++.|+++ |+..
T Consensus 240 ~~~~~~l~~~-----------~~~~~~~~~~~~~~aa~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 303 (405)
T 2vi8_A 240 EQFAKQIDKA-----------IFPGIQGGPLMHVIAAKAVAFGEALQD-DFKAYAKRVVDNAKRLASALQNE-GFTL 303 (405)
T ss_dssp HHHHHHHHHH-----------HTTTTCSSCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred HHHHHHHHhh-----------hcccccCCCCHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHhC-CCeE
Confidence 9887765321 012345788888899999999998766 78999999999999999999987 4543
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=144.63 Aligned_cols=249 Identities=11% Similarity=0.089 Sum_probs=155.2
Q ss_pred CCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhC--CCCCCEEEEEcCCcchhhhHHHHHHhhh
Q psy8733 61 KLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLN--VPNNYKILFLQGGGTGMFAAVAMNLISS 138 (621)
Q Consensus 61 ~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~--~p~~yeI~f~~gggT~~~~a~alNlla~ 138 (621)
+.|++|++++.+.+.+. . .+.+....++.+++++.+++++| ++.+ +|+|+ +|||+ +++++
T Consensus 45 ~~~~~v~~a~~~~~~~~----~-----~~y~~~~~~~~~~l~~~l~~~~g~~~~~~-~v~~~-~g~~~-----a~~~~-- 106 (391)
T 4dq6_A 45 KAAPCIIDSLKNRLEQE----I-----YGYTTRPDSYNESIVNWLYRRHNWKIKSE-WLIYS-PGVIP-----AISLL-- 106 (391)
T ss_dssp CCCHHHHHHHHHHHTTC----C-----CCCBCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SCHHH-----HHHHH--
T ss_pred CCCHHHHHHHHHHHhCC----C-----CCCCCCCHHHHHHHHHHHHHHhCCCCcHH-HeEEc-CChHH-----HHHHH--
Confidence 56899999999987431 0 11111125677888999999999 4433 68876 67888 34332
Q ss_pred ccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCC
Q psy8733 139 SMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP 218 (621)
Q Consensus 139 ~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (621)
+..++.+|+++.+..+++.+ +...++..|...+..+.. ++.
T Consensus 107 ------------------------~~~~~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~~~~~----------~~~--- 147 (391)
T 4dq6_A 107 ------------------------INELTKANDKIMIQEPVYSP--FNSVVKNNNRELIISPLQ----------KLE--- 147 (391)
T ss_dssp ------------------------HHHHSCTTCEEEECSSCCTH--HHHHHHHTTCEEEECCCE----------ECT---
T ss_pred ------------------------HHHhCCCCCEEEEcCCCCHH--HHHHHHHcCCeEEeeeee----------ecC---
Confidence 23334445554444444443 234556667543222100 000
Q ss_pred CccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc------
Q psy8733 219 EASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY------ 292 (621)
Q Consensus 219 ~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~------ 292 (621)
++.|. ++++++ +. .+.+ +++|.+++..+.+|+..+.
T Consensus 148 -------------~~~~~--~d~~~l---------------------~~-~l~~-~~~v~i~~p~nptG~~~~~~~l~~i 189 (391)
T 4dq6_A 148 -------------NGNYI--MDYEDI---------------------EN-KIKD-VKLFILCNPHNPVGRVWTKDELKKL 189 (391)
T ss_dssp -------------TSCEE--CCHHHH---------------------HH-HCTT-EEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred -------------CCceE--eeHHHH---------------------HH-Hhhc-CCEEEEECCCCCCCcCcCHHHHHHH
Confidence 00110 122221 11 2344 8999999999999999663
Q ss_pred --ccccCCCcEEEecccccC----CCccccccc-----c--eEEeccccccCCCc--cEEEEEch-hHHhhhCCCCCcee
Q psy8733 293 --IPDSQGIPLVSDMSSNFL----SRKFDVSKF-----G--VIIAGAQKNIGPAG--ITVVIVRE-DLLEYALPITPTVF 356 (621)
Q Consensus 293 --i~~~~g~llvvDavSs~G----~~pIDv~~~-----g--vl~asaqK~lGP~G--lg~livr~-~ll~~~~~~~P~~l 356 (621)
+++++|+++|+|.+++.+ ..+.++..+ + +++.|.+|++|++| +|+++.++ ++.+++..
T Consensus 190 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~------ 263 (391)
T 4dq6_A 190 GDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDD------ 263 (391)
T ss_dssp HHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHH------
T ss_pred HHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHH------
Confidence 356899999999999873 333444433 2 77889999998776 68888886 66655421
Q ss_pred eccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc-cCCcc
Q psy8733 357 HFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN-SDKFY 417 (621)
Q Consensus 357 d~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~-~~g~~ 417 (621)
.. ......|++.....++.++++...+ .++.+.++.+++.+++++.|++ ++|+.
T Consensus 264 -~~----~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 318 (391)
T 4dq6_A 264 -AF----TRIDIKRNNCFSLVATEASYNNGES--WLESFLEYLESNIDFAIKYINENMPKLK 318 (391)
T ss_dssp -HH----HHTTCCCCCHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHHCTTSE
T ss_pred -HH----HhhcCCCCCHHHHHHHHHHHhchHH--HHHHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 00 1123457888888888888876433 3788899999999999999987 56554
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-13 Score=144.64 Aligned_cols=127 Identities=12% Similarity=0.146 Sum_probs=95.2
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cccccccc-c--eEEeccccccCCCc--cE
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKFDVSKF-G--VIIAGAQKNIGPAG--IT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pIDv~~~-g--vl~asaqK~lGP~G--lg 336 (621)
++++|.+++..|.||+..|. +++++|+++|+|.+++.+. .+..+..+ + +++.|.+|++|++| +|
T Consensus 161 ~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 240 (391)
T 3h14_A 161 DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVG 240 (391)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCE
T ss_pred CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeE
Confidence 78999999999999999883 3467899999999998533 34444444 2 77778899999777 79
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++.+.+.. . ......++|....+++.++++ ... .++.+.++.+++.+++++.|++++
T Consensus 241 ~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~a~~~~l~--~~~-~~~~~~~~~~~~~~~l~~~l~~~~ 303 (391)
T 3h14_A 241 WMVVPEDQVRVVER-------I-----AQNMFICAPHASQVAALAALD--CDA-ELQANLDVYKANRKLMLERLPKAG 303 (391)
T ss_dssp EEECCGGGHHHHHH-------H-----HHHTTCCCCHHHHHHHHHHTT--CHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCHHHHHHHHH-------H-----HhhhccCCCHHHHHHHHHHhC--ChH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999888765521 0 012234677777777777777 222 588889999999999999998875
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-14 Score=146.62 Aligned_cols=248 Identities=10% Similarity=0.102 Sum_probs=140.3
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
..+++++.+++++|++++.+.+..... . ....+++.|+.++++++.+ +++|+ +|||+ |
T Consensus 5 ~~~~~~~~~~~~~v~~a~~~~~~~~~~--------~-----~~~~~~~l~~~la~~~~~~---~~~~~-~sGt~-----a 62 (367)
T 3nyt_A 5 IDLKNQQARIKDKIDAGIQRVLRHGQY--------I-----LGPEVTELEDRLADFVGAK---YCISC-ANGTD-----A 62 (367)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHCCC--------S-----SCHHHHHHHHHHHHHHTCS---EEEEE-SCHHH-----H
T ss_pred ccccccccccCHHHHHHHHHHHhcCCc--------c-----CChHHHHHHHHHHHHhCCC---cEEEe-CCHHH-----H
Confidence 344555557889999999888743110 1 1235788999999999986 57776 67898 4
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
++++...+++++||+|++... ++.+. ...++..|...+..+..
T Consensus 63 l~~al~~~~~~~gd~Vi~~~~-------------------------~~~~~--~~~~~~~G~~~~~~~~~---------- 105 (367)
T 3nyt_A 63 LQIVQMALGVGPGDEVITPGF-------------------------TYVAT--AETVALLGAKPVYVDID---------- 105 (367)
T ss_dssp HHHHHHHTTCCTTCEEEEESS-------------------------SCTHH--HHHHHHTTCEEEEECBC----------
T ss_pred HHHHHHHhCCCCcCEEEECCC-------------------------ccHHH--HHHHHHcCCEEEEEecC----------
Confidence 555444455666666666543 22221 22345566543322210
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
+ + .|. +++++ .+ -.+++++++|. .++.+|...|+
T Consensus 106 ~--~-----------------~~~--~d~~~---------------------l~-~~i~~~~~~v~---~~~~~G~~~~~ 139 (367)
T 3nyt_A 106 P--R-----------------TYN--LDPQL---------------------LE-AAITPRTKAII---PVSLYGQCADF 139 (367)
T ss_dssp T--T-----------------TCS--BCGGG---------------------TG-GGCCTTEEEEC---CBCGGGCCCCH
T ss_pred C--c-----------------cCC--cCHHH---------------------HH-HhcCcCCcEEE---eeCCccChhhH
Confidence 0 0 000 01111 11 13567888887 33477988875
Q ss_pred -----ccccCCCcEEEecccccCCCccccc---cc-ceEEec--cccccCCCc-cEEEEEc-hhHHhhhCCCCC-c-eee
Q psy8733 293 -----IPDSQGIPLVSDMSSNFLSRKFDVS---KF-GVIIAG--AQKNIGPAG-ITVVIVR-EDLLEYALPITP-T-VFH 357 (621)
Q Consensus 293 -----i~~~~g~llvvDavSs~G~~pIDv~---~~-gvl~as--aqK~lGP~G-lg~livr-~~ll~~~~~~~P-~-~ld 357 (621)
+++++|+++|+|++|++|.. .+.. .+ |++++| ++|++|++| .|+++.+ +++.+++.+... . ...
T Consensus 140 ~~i~~la~~~~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~ 218 (367)
T 3nyt_A 140 DAINAIASKYGIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRR 218 (367)
T ss_dssp HHHHHHHHHTTCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEET
T ss_pred HHHHHHHHHcCCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcC
Confidence 45789999999999998875 3322 23 366666 799999866 4455553 556555433111 0 000
Q ss_pred ccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 358 FKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 358 ~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|.. ...+..+..++..... ....++ .++.+.++.+++++++++.|++++
T Consensus 219 ~~~-~~~g~~~~~~~~~aa~-~~~~l~------~~~~~~~~~~~~~~~~~~~L~~~~ 267 (367)
T 3nyt_A 219 YHH-IRVGVNSRLDTLQAAI-LLPKLE------IFEEEIALRQKVAAEYDLSLKQVG 267 (367)
T ss_dssp TEE-CSCCCBCCCCHHHHHH-HHHHHH------THHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cee-eccCcCCCccHHHHHH-HHHHHH------HHHHHHHHHHHHHHHHHHHhccCC
Confidence 100 0111222233332222 222222 366777888889999999999874
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-14 Score=148.87 Aligned_cols=254 Identities=11% Similarity=0.070 Sum_probs=149.9
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
..+.+++|..++|++|++++.+.+.+- +... ...+.+.|+.++++++.+ +++|+ ++||+
T Consensus 31 ~~id~~~~~~~~~~~v~~a~~~~~~~~-----------~y~~--~~~~~~l~~~la~~~~~~---~~v~~-~~Gt~---- 89 (399)
T 2oga_A 31 PFLDLKAAYEELRAETDAAIARVLDSG-----------RYLL--GPELEGFEAEFAAYCETD---HAVGV-NSGMD---- 89 (399)
T ss_dssp CSCCHHHHHHHTHHHHHHHHHHHHHHT-----------CCSS--SHHHHHHHHHHHHHTTSS---EEEEE-SCHHH----
T ss_pred cccccCcCCCCCCHHHHHHHHHHHhcC-----------CCCC--chhHHHHHHHHHHHHCCC---eEEEe-cCHHH----
Confidence 456778888778899999999987431 0110 145778999999999986 46776 56788
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
+++++...+++++||+|++... ++.+ ....++..|...+..+..
T Consensus 90 -a~~~~l~~~~~~~gd~vl~~~~-------------------------~~~~--~~~~~~~~g~~~~~~~~~-------- 133 (399)
T 2oga_A 90 -ALQLALRGLGIGPGDEVIVPSH-------------------------TYIA--SWLAVSATGATPVPVEPH-------- 133 (399)
T ss_dssp -HHHHHHHHTTCCTTCEEEEESS-------------------------SCTH--HHHHHHHTTCEEEEECBC--------
T ss_pred -HHHHHHHHhCCCCcCEEEECCC-------------------------ccHH--HHHHHHHCCCEEEEEecC--------
Confidence 4555444444566666665542 2222 223445566543322210
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
+ ..|. ++++++ + -.+++++++|.+ ++++|...
T Consensus 134 --~-------------------~~~~--~d~~~l---------------------~-~~i~~~~~~v~~---~n~tG~~~ 165 (399)
T 2oga_A 134 --E-------------------DHPT--LDPLLV---------------------E-KAITPRTRALLP---VHLYGHPA 165 (399)
T ss_dssp --S-------------------SSSS--BCHHHH---------------------H-HHCCTTEEEECC---BCGGGCCC
T ss_pred --C-------------------CCCC--cCHHHH---------------------H-HhcCCCCeEEEE---eCCcCCcc
Confidence 0 0000 111221 0 124457887774 35789988
Q ss_pred cc-----ccccCCCcEEEecccccCCCccccccc----ceEEeccc--cccCCCc-cEEEEEc-hhHHhhhCCCC--Cce
Q psy8733 291 NY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF----GVIIAGAQ--KNIGPAG-ITVVIVR-EDLLEYALPIT--PTV 355 (621)
Q Consensus 291 p~-----i~~~~g~llvvDavSs~G~~pIDv~~~----gvl~asaq--K~lGP~G-lg~livr-~~ll~~~~~~~--P~~ 355 (621)
|+ +++++|+++|+|.+++.|... +...+ |++++|.| |++|++| .|+++.+ +++++++.+.. ...
T Consensus 166 ~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~ 244 (399)
T 2oga_A 166 DMDALRELADRHGLHIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSR 244 (399)
T ss_dssp CHHHHHHHHHHHTCEECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCS
T ss_pred CHHHHHHHHHHcCCEEEEECcccccCcc-CCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcc
Confidence 85 456789999999999988642 43322 47888875 9999876 5566665 67766654311 111
Q ss_pred eeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 356 FHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 356 ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
..|.. .......+++....+++.++++++. .+.++.+++++++++.|++++|+..
T Consensus 245 ~~~~~--~~~g~~~~~~~~~~a~~~~~l~~~~------~~~~~~~~~~~~l~~~L~~~~g~~~ 299 (399)
T 2oga_A 245 QKYSH--ETKGTNSRLDEMQAAVLRIRLAHLD------SWNGRRSALAAEYLSGLAGLPGIGL 299 (399)
T ss_dssp STTCC--CSCCCBCCCCHHHHHHHHHHHHTHH------HHHHHHHHHHHHHHHHTTTCTTCBC
T ss_pred ccccc--cccccCCCcCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhccCCCccc
Confidence 11110 0011112455566666666666553 4566777888899999988766543
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=151.83 Aligned_cols=145 Identities=7% Similarity=-0.055 Sum_probs=99.1
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc-----c---cccceEEeccccccC-CCccEEEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD-----V---SKFGVIIAGAQKNIG-PAGITVVI 339 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID-----v---~~~gvl~asaqK~lG-P~Glg~li 339 (621)
+.+|.+++.+|.+|...|+ +++++|++++||++++.+....+ + +..|.+.+++|||++ |.|.|+++
T Consensus 235 ~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~ 314 (475)
T 3k40_A 235 PFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMW 314 (475)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred cEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEE
Confidence 6789999999999999886 45789999999999987653221 2 233799999999996 99999999
Q ss_pred EchhHH-hhhCCCCCceeecccc---c--cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 340 VREDLL-EYALPITPTVFHFKIN---A--DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 340 vr~~ll-~~~~~~~P~~ld~~~~---~--~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++++.+ .+.....+.|+..... . .......+-+ +.+..+..+++.+..+ |++++.++..++++++++.|.++
T Consensus 315 ~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~ 392 (475)
T 3k40_A 315 LKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRR-FRALKLWFVLRLYGVE-NLQAHIRRHCNFAKQFGDLCVAD 392 (475)
T ss_dssp ESSGGGC---------------------------CCCGG-GTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCc-ccHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 997743 2222223334321110 0 0001112222 3567788889988777 89999999999999999999999
Q ss_pred CCcccCc
Q psy8733 414 DKFYECP 420 (621)
Q Consensus 414 ~g~~~~~ 420 (621)
+||.+..
T Consensus 393 ~g~~l~~ 399 (475)
T 3k40_A 393 SRFELAA 399 (475)
T ss_dssp TTEEESS
T ss_pred CCEEEec
Confidence 8887653
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-12 Score=134.53 Aligned_cols=238 Identities=11% Similarity=0.107 Sum_probs=148.0
Q ss_pred ceeccC-CCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 52 VINFGA-GPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 52 ~~lf~a-GPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
++|... .|.++|+.|++++.+.+.++.. .+ ...+.+.|+.++++++++.+ +|+|+ +|+|+
T Consensus 19 i~l~~n~~~~~~~~~v~~a~~~~~~~~~~-----------y~--~~~~~~lr~~la~~~~~~~~-~i~~t-~G~~~---- 79 (337)
T 3p1t_A 19 VCLAFNENPEAVEPRVQAAIAAAAARINR-----------YP--FDAEPRVMRKLAEHFSCPED-NLMLV-RGIDE---- 79 (337)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHGGGTTS-----------CC--TTHHHHHHHHHHHHHTSCGG-GEEEE-SHHHH----
T ss_pred eEeeCCCCCCCCCHHHHHHHHHhhhhhcc-----------CC--CCchHHHHHHHHHHhCcCHH-HEEEe-CCHHH----
Confidence 444433 4667899999999987643211 11 13567889999999999754 68876 66888
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
+++++...+ +||+|++.. +++.+ +...++..|...+..+.
T Consensus 80 -~l~~~~~~~---~gd~vl~~~-------------------------p~~~~--~~~~~~~~g~~~~~v~~--------- 119 (337)
T 3p1t_A 80 -CFDRISAEF---SSMRFVTAW-------------------------PGFDG--YRARIAVSGLRHFEIGL--------- 119 (337)
T ss_dssp -HHHHHHHHS---TTSEEEEES-------------------------SSCSH--HHHHHTTSCCEEEEECB---------
T ss_pred -HHHHHHHhc---CCCeEEEeC-------------------------CCcHH--HHHHHHHcCCEEEEecC---------
Confidence 565544433 455555443 33332 23344555653222211
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
++...+++|+ +..-.++++|.+++..|.||..+
T Consensus 120 -----------------------~~~~~~d~~~------------------------l~~~~~~~~v~i~~p~nptG~~~ 152 (337)
T 3p1t_A 120 -----------------------TDDLLLDPND------------------------LAQVSRDDCVVLANPSNPTGQAL 152 (337)
T ss_dssp -----------------------CTTSSBCHHH------------------------HTTCCTTEEEEEESSCTTTCCCC
T ss_pred -----------------------CCCCCCCHHH------------------------HHhhcCCCEEEEeCCCCCCCCCC
Confidence 0000112222 11114689999999999999999
Q ss_pred cc-----ccccCCCcEEEecccc-cC-CCcccccc--cceEEeccccccCCCcc--EEEEEchhHHhhhCCCCCceeecc
Q psy8733 291 NY-----IPDSQGIPLVSDMSSN-FL-SRKFDVSK--FGVIIAGAQKNIGPAGI--TVVIVREDLLEYALPITPTVFHFK 359 (621)
Q Consensus 291 p~-----i~~~~g~llvvDavSs-~G-~~pIDv~~--~gvl~asaqK~lGP~Gl--g~livr~~ll~~~~~~~P~~ld~~ 359 (621)
|. +++.+++ +|+|.+++ ++ ..+..... .++++.|.+|++|++|+ |+++.++++++++..
T Consensus 153 ~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~--------- 222 (337)
T 3p1t_A 153 SAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKR--------- 222 (337)
T ss_dssp CHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHT---------
T ss_pred CHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHh---------
Confidence 95 4456776 55688776 22 22222322 23888999999997775 999999998876632
Q ss_pred ccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 360 INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 360 ~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
...+.+++.....++.++++... .++...++..++.+++++.|.++
T Consensus 223 -----~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~l~~~L~~~ 268 (337)
T 3p1t_A 223 -----KQWFCNVGTLDLHALEAALDNDR---AREAHIAKTLAQRRRVADALRGL 268 (337)
T ss_dssp -----TSCTTCSCHHHHHHHHHHHTCHH---HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----hcCCCCCCHHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHHHHHHC
Confidence 12345677777777766665321 35666677777788888988886
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=150.18 Aligned_cols=142 Identities=13% Similarity=-0.009 Sum_probs=96.4
Q ss_pred eEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc-c-------cccceEEeccccccC-CCccEEEEE
Q psy8733 275 SYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD-V-------SKFGVIIAGAQKNIG-PAGITVVIV 340 (621)
Q Consensus 275 ~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID-v-------~~~gvl~asaqK~lG-P~Glg~liv 340 (621)
.+|.+++.+|.+|...|+ +++++|+++++|++++.+..+.+ + ...|.+++++||+++ |.|+|++++
T Consensus 237 ~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~ 316 (486)
T 1js3_A 237 FFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV 316 (486)
T ss_dssp EEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEE
T ss_pred eEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEE
Confidence 489999999999999886 45789999999999987765442 2 234688899999997 889999999
Q ss_pred chhH--HhhhCCCCCceeecccc-----cc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 341 REDL--LEYALPITPTVFHFKIN-----AD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 341 r~~l--l~~~~~~~P~~ld~~~~-----~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+++. .+.+ ...|.|+..... .. ......+.+ +...++..+++.+... |++++.++..++++++++.|.
T Consensus 317 ~~~~~l~~~~-~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr-~~~~~~~~al~~~g~~-g~~~~~~~~~~~a~~l~~~L~ 393 (486)
T 1js3_A 317 KRRTDLTGAF-KLDPVYLKHSHQGSGLITDYRHWQLPLGRR-FRSLKMWFVFRMYGVK-GLQAYIRKHVQLSHEFEAFVL 393 (486)
T ss_dssp SCHHHHHGGG-C------------CCSCCCGGGSSSCSCCC-CTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHh-cCCchhhCCCcccccCCCCccccCCCCCCc-hhHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 8764 2333 223334322110 00 000011111 1345666778877666 799999999999999999999
Q ss_pred ccCCcccC
Q psy8733 412 NSDKFYEC 419 (621)
Q Consensus 412 ~~~g~~~~ 419 (621)
+++|+.+.
T Consensus 394 ~~~~~~~~ 401 (486)
T 1js3_A 394 QDPRFEVC 401 (486)
T ss_dssp HCTTEEEC
T ss_pred cCCCeEEe
Confidence 98877654
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=143.98 Aligned_cols=243 Identities=14% Similarity=0.126 Sum_probs=156.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhcc
Q psy8733 61 KLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSM 140 (621)
Q Consensus 61 ~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~ 140 (621)
+.|+.|.+++.+.+.+ .. +.+. .....+.|+.++++++++.+ +|+|+ +|||++ +++
T Consensus 38 ~~~~~v~~a~~~~~~~--~~--------~y~~--~~~~~~l~~~la~~~~~~~~-~v~~~-~g~~~a-----~~~----- 93 (381)
T 1v2d_A 38 PPPPFLLEAVRRALGR--QD--------QYAP--PAGLPALREALAEEFAVEPE-SVVVT-SGATEA-----LYV----- 93 (381)
T ss_dssp CCCHHHHHHHHHHTTT--SC--------SCCC--TTCCHHHHHHHHHHHTSCGG-GEEEE-SSHHHH-----HHH-----
T ss_pred CCCHHHHHHHHHHHHH--hc--------CCCC--CCCCHHHHHHHHHhcCCChh-hEEEc-CChHHH-----HHH-----
Confidence 4689999999998743 10 1110 01356789999999998654 58776 678883 333
Q ss_pred CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCc
Q psy8733 141 NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEA 220 (621)
Q Consensus 141 ~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v 220 (621)
++..++.+|+++.+..+++.+. ...++..|...+..+..
T Consensus 94 ---------------------~~~~~~~~gd~Vl~~~~~~~~~--~~~~~~~g~~~~~v~~~------------------ 132 (381)
T 1v2d_A 94 ---------------------LLQSLVGPGDEVVVLEPFFDVY--LPDAFLAGAKARLVRLD------------------ 132 (381)
T ss_dssp ---------------------HHHHHCCTTCEEEEEESCCTTH--HHHHHHTTCEEEEEECE------------------
T ss_pred ---------------------HHHHhCCCCCEEEEcCCCchhH--HHHHHHcCCEEEEEeCC------------------
Confidence 2333344555555555544442 34556667543222110
Q ss_pred cccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc--------
Q psy8733 221 SYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-------- 292 (621)
Q Consensus 221 ~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-------- 292 (621)
.....|. +++|++ + -.+++++++|.+++..|.||...|.
T Consensus 133 ---------~~~~~~~--~d~~~l---------------------~-~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~ 179 (381)
T 1v2d_A 133 ---------LTPEGFR--LDLSAL---------------------E-KALTPRTRALLLNTPMNPTGLVFGERELEAIAR 179 (381)
T ss_dssp ---------EETTEEE--CCHHHH---------------------H-TTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred ---------CCCccCC--cCHHHH---------------------H-HhcCcCCEEEEECCCCCCCCCccCHHHHHHHHH
Confidence 0000011 222221 0 1245679999999999999998762
Q ss_pred ccccCCCcEEEecccccC---CCcccccc--c--ceEEeccccccCCCc--cEEEEEchhHHhhhCCCCCceeecccccc
Q psy8733 293 IPDSQGIPLVSDMSSNFL---SRKFDVSK--F--GVIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINAD 363 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G---~~pIDv~~--~--gvl~asaqK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~ 363 (621)
+++++|+++|+|.+++.+ ..+.++.. . ++++.|.+|++|++| +|++++++++++.+.. ..
T Consensus 180 ~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~-------~~---- 248 (381)
T 1v2d_A 180 LARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAG-------MR---- 248 (381)
T ss_dssp HHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHH-------HH----
T ss_pred HHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHH-------HH----
Confidence 345789999999999864 33445442 2 388999999999889 8999999988776531 00
Q ss_pred CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 364 NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 364 ~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.....|++....+++.++|+......+++.+.++.+++++++++.|++.
T Consensus 249 -~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 297 (381)
T 1v2d_A 249 -QWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM 297 (381)
T ss_dssp -HHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -hhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 1123466777788888888866322268999999999999999999885
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-13 Score=143.72 Aligned_cols=127 Identities=10% Similarity=0.076 Sum_probs=93.6
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC---cccc-c------ccceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR---KFDV-S------KFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~---pIDv-~------~~gvl~asaqK~lGP~Glg~ 337 (621)
++++|.+++..+.||...|+ +++++|+++|+|.+++.+.. ..++ + ..++++.|.+|++||+| |+
T Consensus 173 ~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~ 251 (398)
T 3a2b_A 173 SAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG-GF 251 (398)
T ss_dssp SCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC-EE
T ss_pred CceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC-cE
Confidence 68999999999999999885 45678999999999987642 2222 1 13688899999999999 99
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++.++++++++...... ....++++.....++.++|+.+.. ++.+.++.+++.+++++.|+++
T Consensus 252 ~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~~ 314 (398)
T 3a2b_A 252 VAGDADVIDFLKHNARS----------VMFSASMTPASVASTLKALEIIQN---EPEHIEKLWKNTDYAKAQLLDH 314 (398)
T ss_dssp EEECHHHHHHHHHHCHH----------HHSSBCCCHHHHHHHHHHHHHHHH---CTHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCHHHHHHHHHhccc----------ceecCCCCHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988765321100 011234455555566678877632 4678888899999999999887
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-13 Score=142.34 Aligned_cols=130 Identities=10% Similarity=0.055 Sum_probs=97.9
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---cc-ccc----cceEEeccccccCCCccEEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---FD-VSK----FGVIIAGAQKNIGPAGITVVI 339 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---ID-v~~----~gvl~asaqK~lGP~Glg~li 339 (621)
++++|.+++..+.+|...|+ +++++|+++|+|.+++.|... .. .+. .++++.|.+|++||+| |+++
T Consensus 168 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~ 246 (384)
T 1bs0_A 168 GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVL 246 (384)
T ss_dssp SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEE
T ss_pred CCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC-cEEE
Confidence 47888888888999999995 456899999999999877532 11 111 2488999999999999 9999
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
.++++++++......+ ....+++.....++.++++++.+. .++.+.++.+++.+++++.|++++
T Consensus 247 ~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g 310 (384)
T 1bs0_A 247 CSSTVADYLLQFARHL----------IYSTSMPPAQAQALRASLAVIRSD-EGDARREKLAALITRFRAGVQDLP 310 (384)
T ss_dssp ECHHHHHHHHHHCHHH----------HSSBCCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred eCHHHHHHHHHhchhh----------hcCCCCCHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999887653211000 001257778888888899988753 367888999999999999998873
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-13 Score=142.42 Aligned_cols=129 Identities=12% Similarity=0.129 Sum_probs=101.4
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc------cccc----ccceEEeccccccC-CCccE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK------FDVS----KFGVIIAGAQKNIG-PAGIT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p------IDv~----~~gvl~asaqK~lG-P~Glg 336 (621)
++++|.+++..+.+|...|+ +++++|+++|+|.+++.|..+ ++.. ..++++.|.+|++| ++| |
T Consensus 175 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G 253 (399)
T 3tqx_A 175 RFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-G 253 (399)
T ss_dssp SSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-E
T ss_pred CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-E
Confidence 78999999999999999995 456899999999999866533 2221 23588999999997 999 9
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++++.+......+ ...+|++...++++.++++++. . +++.+.++.+++.+++++.|++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~l~~~L~~~g 319 (399)
T 3tqx_A 254 YTSGHKEIIEWLRNRSRPY----------LFSNTVAPVIVATSLKVLELLK-T-EGPQLRKQLQENSRYFRAGMEKLG 319 (399)
T ss_dssp EEEECHHHHHHHHHHCHHH----------HSSCCCCHHHHHHHHHHHHHHH-H-THHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCHHHHHHHHHhCcce----------eccCCCcHHHHHHHHHHHHHHh-h-ccHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999887664211100 1134778888888889999886 3 689999999999999999999873
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=146.00 Aligned_cols=241 Identities=13% Similarity=0.073 Sum_probs=149.1
Q ss_pred CCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhcc
Q psy8733 61 KLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSM 140 (621)
Q Consensus 61 ~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~ 140 (621)
.++++|++++.+.+.+... .. ....+.+.|+.++++++.+ +|+|+ +|||+ +++++...+
T Consensus 9 ~~~~~v~~a~~~~~~~~~~--------~~----~g~~~~~l~~~la~~~~~~---~v~~~-~ggt~-----al~~~~~~l 67 (394)
T 1o69_A 9 HMGGNELKYIEEVFKSNYI--------AP----LGEFVNRFEQSVKDYSKSE---NALAL-NSATA-----ALHLALRVA 67 (394)
T ss_dssp ---CCHHHHHHHHHHHTTT--------SC----TTHHHHHHHHHHHHHHCCS---EEEEE-SCHHH-----HHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCc--------cC----CChHHHHHHHHHHHHhCCC---cEEEe-CCHHH-----HHHHHHHHc
Confidence 4667899999888753111 10 1146788999999999982 68887 67888 566665555
Q ss_pred CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCc
Q psy8733 141 NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEA 220 (621)
Q Consensus 141 ~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v 220 (621)
++++||+|++... ++.+. ...++..|...+..+.
T Consensus 68 ~~~~gd~Vl~~~~-------------------------~~~~~--~~~~~~~g~~~~~v~~------------------- 101 (394)
T 1o69_A 68 GVKQDDIVLASSF-------------------------TFIAS--VAPICYLKAKPVFIDC------------------- 101 (394)
T ss_dssp TCCTTCEEEEESS-------------------------SCGGG--THHHHHTTCEEEEECB-------------------
T ss_pred CCCCCCEEEECCC-------------------------ccHHH--HHHHHHcCCEEEEEEe-------------------
Confidence 5677777777653 11111 1123345653322211
Q ss_pred cccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCC---CceEEEEecccccccccccc-----
Q psy8733 221 SYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDP---EASYLYYCDNETVDGVEFNY----- 292 (621)
Q Consensus 221 ~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~---~t~~V~~thnET~tGv~~p~----- 292 (621)
+..|. ++++++ +. .+++ ++++|.+++ .+|...++
T Consensus 102 -----------~~~~~--~d~~~l---------------------~~-~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~ 143 (394)
T 1o69_A 102 -----------DETYN--IDVDLL---------------------KL-AIKECEKKPKALILTH---LYGNAAKMDEIVE 143 (394)
T ss_dssp -----------CTTSS--BCHHHH---------------------HH-HHHHCSSCCCEEEEEC---GGGCCCCHHHHHH
T ss_pred -----------CCCCC--cCHHHH---------------------HH-HHhcccCCceEEEEEC---CCCChhhHHHHHH
Confidence 00000 112221 00 1112 688999987 68988775
Q ss_pred ccccCCCcEEEecccccCCCccccc-----ccceEEeccccccCCCccEEEEEc-hhHHhhhCCCCCceee---cccccc
Q psy8733 293 IPDSQGIPLVSDMSSNFLSRKFDVS-----KFGVIIAGAQKNIGPAGITVVIVR-EDLLEYALPITPTVFH---FKINAD 363 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~pIDv~-----~~gvl~asaqK~lGP~Glg~livr-~~ll~~~~~~~P~~ld---~~~~~~ 363 (621)
+++++|+++|+|.++++|..+.+.. ..++..+|.+|++||.++|+++.+ +++++++.+....... +-....
T Consensus 144 l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 223 (394)
T 1o69_A 144 ICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLD 223 (394)
T ss_dssp HHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSS
T ss_pred HHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccc
Confidence 4568999999999999877654432 234788888999998899999996 7877766432111100 001122
Q ss_pred CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 364 NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 364 ~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.+..++|+++.+++++.. ++++ +.+.++.+++++++++.|.++
T Consensus 224 ~g~~~~~~~~~aa~~l~~-l~~l------~~~~~~~~~~~~~l~~~L~~~ 266 (394)
T 1o69_A 224 YGYNYRLSNVLGAIGVAQ-MEVL------EQRVLKKREIYEWYKEFLGEY 266 (394)
T ss_dssp CCCBCBCCHHHHHHHHHH-HTTH------HHHHHHHHHHHHHHHHHHTTT
T ss_pred cCcccCcCHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHhccc
Confidence 345567999998887764 5554 445677888889999999875
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-12 Score=143.77 Aligned_cols=142 Identities=16% Similarity=0.154 Sum_probs=95.8
Q ss_pred CCCCceEEEEeccccccccc-ccc-----ccccCCCcEEEecccccCCC-cccccccc--eEEeccccccC-CC-----c
Q psy8733 270 RDPEASYLYYCDNETVDGVE-FNY-----IPDSQGIPLVSDMSSNFLSR-KFDVSKFG--VIIAGAQKNIG-PA-----G 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~-~p~-----i~~~~g~llvvDavSs~G~~-pIDv~~~g--vl~asaqK~lG-P~-----G 334 (621)
+++++++|.+++. |.+|+. .++ +++++|+++|+|++++.+.. +++..+++ ++++|.||+++ |. |
T Consensus 200 i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~ 278 (474)
T 1wyu_B 200 LGPHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPG 278 (474)
T ss_dssp CSTTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCC
T ss_pred hCCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCC
Confidence 5568999999875 679987 464 45678999999999986654 45555554 89999999997 64 6
Q ss_pred cEEEEEchhHHhhhCCC-----C-Cceeecccccc-CCCccCCchHHHHHHHHHHHHHHH---hhCCHHHHHHHHHHHHH
Q psy8733 335 ITVVIVREDLLEYALPI-----T-PTVFHFKINAD-NNSVYNTPPTFVVHVIQRVFAWIK---RQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 335 lg~livr~~ll~~~~~~-----~-P~~ld~~~~~~-~~s~~~TP~v~~I~aL~~aL~~i~---~~gGl~~i~~r~~~la~ 404 (621)
+|++++++++++++... . ..++++..... ......+++... +.+++.++. .+ |++.+.++..++++
T Consensus 279 ~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~~~l~~~g~~-~l~~~~~~~~~~~~ 354 (474)
T 1wyu_B 279 SGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLA---LVRAWAYIRTLGLE-GLKKAAALAVLNAR 354 (474)
T ss_dssp CCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred eEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999988766421 0 11122211000 011223455543 444455554 44 68888999999999
Q ss_pred HHHHHHHccCCcc
Q psy8733 405 LLYQEIDNSDKFY 417 (621)
Q Consensus 405 ~L~e~L~~~~g~~ 417 (621)
++++.|+++ |+.
T Consensus 355 ~l~~~L~~~-g~~ 366 (474)
T 1wyu_B 355 YLKELLKEK-GYR 366 (474)
T ss_dssp HHHHHHHHT-TCB
T ss_pred HHHHHHhhc-CcE
Confidence 999999987 454
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.7e-14 Score=146.54 Aligned_cols=264 Identities=11% Similarity=0.101 Sum_probs=156.8
Q ss_pred ceeccC---CCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCC--CCEEEEEcCCcch
Q psy8733 52 VINFGA---GPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPN--NYKILFLQGGGTG 126 (621)
Q Consensus 52 ~~lf~a---GPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~--~yeI~f~~gggT~ 126 (621)
++.|+. .|.+.|++|++++.+.+.+....+.+ . +....++.+++++.+++++|++- ..+|+|+ +|||+
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~---~---~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~-~g~~~ 113 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYT---E---YRGDLGIRDLLAPRLAAFTGAPVDARDGLIIT-PGTQG 113 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSC---C---TTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcC---C---CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CCcHH
Confidence 455554 35578999999999988643211100 0 11124567788889999999842 1368886 67888
Q ss_pred hhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccc
Q psy8733 127 MFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 127 ~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
++++ ++..++.+|+++.+..+++.+ +...++..|...+..+..
T Consensus 114 -----a~~~--------------------------~~~~l~~~gd~vl~~~~~~~~--~~~~~~~~g~~~~~~~~~---- 156 (407)
T 3nra_A 114 -----ALFL--------------------------AVAATVARGDKVAIVQPDYFA--NRKLVEFFEGEMVPVQLD---- 156 (407)
T ss_dssp -----HHHH--------------------------HHHTTCCTTCEEEEEESCCTH--HHHHHHHTTCEEEEEEBC----
T ss_pred -----HHHH--------------------------HHHHhCCCCCEEEEcCCcccc--hHHHHHHcCCEEEEeecc----
Confidence 3443 233344555555555555444 345566677643332210
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
+. ... +..| .++++++ +. .+.+++++|.+++..+.|
T Consensus 157 --~~--~~~----------------~~~~--~~d~~~l---------------------~~-~l~~~~~~v~~~~p~npt 192 (407)
T 3nra_A 157 --YV--SAD----------------ETRA--GLDLTGL---------------------EE-AFKAGARVFLFSNPNNPA 192 (407)
T ss_dssp --CC--SSC----------------CSSC--CBCHHHH---------------------HH-HHHTTCCEEEEESSCTTT
T ss_pred --cc--ccc----------------CcCC--CcCHHHH---------------------HH-HHhhCCcEEEEcCCCCCC
Confidence 00 000 0001 0112221 00 133478899999999999
Q ss_pred ccccc---c-----ccccCCCcEEEecccccC----CCcccccc-----cc--eEEeccccccCCCc--cEEEEEchhHH
Q psy8733 287 GVEFN---Y-----IPDSQGIPLVSDMSSNFL----SRKFDVSK-----FG--VIIAGAQKNIGPAG--ITVVIVREDLL 345 (621)
Q Consensus 287 Gv~~p---~-----i~~~~g~llvvDavSs~G----~~pIDv~~-----~g--vl~asaqK~lGP~G--lg~livr~~ll 345 (621)
|+..| + +++++|+++|+|.+++.+ .....+.. .+ +++.|.+|++|++| +|+++.+++++
T Consensus 193 G~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~ 272 (407)
T 3nra_A 193 GVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAII 272 (407)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHH
Confidence 99988 2 345789999999999873 22333322 33 78889999999776 79999999888
Q ss_pred hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 346 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 346 ~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
+.+... . .....+++....+++.++++. ..+.++.+.++.+++.+++++.|++++|+.
T Consensus 273 ~~l~~~-------~-----~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 330 (407)
T 3nra_A 273 ARMEKL-------Q-----AIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRDELLHVLRGCEGVF 330 (407)
T ss_dssp HHHHHH-------H-----HHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHHHHHHHHHHTSTTCB
T ss_pred HHHHHH-------H-----hhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 765321 0 011123344444444444431 112367888888999999999999876554
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.6e-13 Score=140.04 Aligned_cols=131 Identities=9% Similarity=0.007 Sum_probs=98.0
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----cccc-cccc--eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----KFDV-SKFG--VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----pIDv-~~~g--vl~asaqK~lGP~G 334 (621)
+++++++|.+++..|.||...|. +++++|+++|+|.+++.+.. .++. +.++ +++.|.+|++|++|
T Consensus 143 ~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 222 (364)
T 1lc5_A 143 LTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPG 222 (364)
T ss_dssp CCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTT
T ss_pred ccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCc
Confidence 34678999999999999999882 34578999999999986542 2443 4444 78899999999788
Q ss_pred --cEEEE-EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 335 --ITVVI-VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 335 --lg~li-vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+|+++ .++++++++.+.. ...++|....+++.++|+. . . .++.+.++.+++.+++.+.|+
T Consensus 223 ~r~G~~~~~~~~~~~~l~~~~--------------~~~~~~~~~~~~~~~~l~~-~-~-~~~~~~~~~~~~~~~l~~~L~ 285 (364)
T 1lc5_A 223 LRLGYLVNSDDAAMARMRRQQ--------------MPWSVNALAALAGEVALQD-S-A-WQQATWHWLREEGARFYQALC 285 (364)
T ss_dssp TCCEEEECCCHHHHHHHHHHS--------------CTTCSCHHHHHHHHHGGGC-H-H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCHHHHHHHHHhC--------------CCCCCCHHHHHHHHHHHhC-c-H-HHHHHHHHHHHHHHHHHHHHh
Confidence 69999 8999887653210 1236677777777777764 1 2 478888889999999999998
Q ss_pred ccCCcc
Q psy8733 412 NSDKFY 417 (621)
Q Consensus 412 ~~~g~~ 417 (621)
+++|+.
T Consensus 286 ~~~~~~ 291 (364)
T 1lc5_A 286 QLPLLT 291 (364)
T ss_dssp TSTTEE
T ss_pred cCCCCE
Confidence 876554
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.1e-13 Score=139.62 Aligned_cols=249 Identities=14% Similarity=0.086 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccC
Q psy8733 62 LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMN 141 (621)
Q Consensus 62 ~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~ 141 (621)
++++|++++.+.+.+. . ..+.. ...+++.|+.++++++.++ .|+ ++ +||+ |++++...++
T Consensus 15 ~~~~~~~a~~~~l~~~----~----~~~~~---~~~~~~l~~~la~~~~~~~--~i~-~~-sGt~-----al~~~l~~l~ 74 (388)
T 1b9h_A 15 YDDAERNGLVRALEQG----Q----WWRMG---GDEVNSFEREFAAHHGAAH--ALA-VT-NGTH-----ALELALQVMG 74 (388)
T ss_dssp CCHHHHHHHHHHHHTS----C----CBTTT---CSHHHHHHHHHHHHTTCSE--EEE-ES-CHHH-----HHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcC----C----eeecC---CHHHHHHHHHHHHHhCCCe--EEE-eC-CHHH-----HHHHHHHHcC
Confidence 5689999999987541 0 01111 2467889999999999862 454 43 4588 5666555555
Q ss_pred CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCcc
Q psy8733 142 VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221 (621)
Q Consensus 142 ~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (621)
+++||+|++... ++.+. ...++..|...+..+..
T Consensus 75 ~~~gd~Vi~~~~-------------------------~~~~~--~~~~~~~g~~~~~v~~~------------------- 108 (388)
T 1b9h_A 75 VGPGTEVIVPAF-------------------------TFISS--SQAAQRLGAVTVPVDVD------------------- 108 (388)
T ss_dssp CCTTCEEEEESS-------------------------SCTHH--HHHHHHTTCEEEEECBC-------------------
T ss_pred CCCcCEEEECCC-------------------------ccHHH--HHHHHHcCCEEEEEecC-------------------
Confidence 566666666543 22222 23345667543322210
Q ss_pred ccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc-----cccc
Q psy8733 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDS 296 (621)
Q Consensus 222 ~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~ 296 (621)
...|. ++++++ + -.+++++++|. .+| .+|...|+ ++++
T Consensus 109 ----------~~~~~--~d~~~l---------------------~-~~i~~~~~~v~-~~n--~tG~~~~l~~i~~la~~ 151 (388)
T 1b9h_A 109 ----------AATYN--LDPEAV---------------------A-AAVTPRTKVIM-PVH--MAGLMADMDALAKISAD 151 (388)
T ss_dssp ----------TTTCC--BCHHHH---------------------H-HHCCTTEEEEC-CBC--GGGCCCCHHHHHHHHHH
T ss_pred ----------CCcCC--CCHHHH---------------------H-HhcCcCceEEE-EeC--CccCcCCHHHHHHHHHH
Confidence 00000 111221 0 12456788877 444 56998885 4567
Q ss_pred CCCcEEEecccccCCCc--ccccccc---eEEeccccccCCCccEEEEEchh-H--HhhhCCCCCceeeccccccCCCcc
Q psy8733 297 QGIPLVSDMSSNFLSRK--FDVSKFG---VIIAGAQKNIGPAGITVVIVRED-L--LEYALPITPTVFHFKINADNNSVY 368 (621)
Q Consensus 297 ~g~llvvDavSs~G~~p--IDv~~~g---vl~asaqK~lGP~Glg~livr~~-l--l~~~~~~~P~~ld~~~~~~~~s~~ 368 (621)
+|+++|+|++++.|..+ .++..++ +..+|.||++++...|+++.+++ + ++++......-.......-.....
T Consensus 152 ~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (388)
T 1b9h_A 152 TGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIA 231 (388)
T ss_dssp HTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSC
T ss_pred cCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecc
Confidence 89999999999998866 5666655 55666899996445688888876 5 454421100000000000001112
Q ss_pred C---CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 369 N---TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 369 ~---TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+ +++...++++..++++ ++.+.++.+++++++++.|++++|+...
T Consensus 232 g~~~~~~~~~~a~~~~~~~~------l~~~~~~~~~~~~~l~~~L~~~~~~~~~ 279 (388)
T 1b9h_A 232 GSNMRLNEFSASVLRAQLAR------LDEQIAVRDERWTLLSRLLGAIDGVVPQ 279 (388)
T ss_dssp CCBCBCBHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHHHHTSTTCEEC
T ss_pred cccCCcCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 2 2555555554444443 4556677778889999999988766544
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-13 Score=143.59 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=96.5
Q ss_pred CCCCceEEEEeccccccccccc---c-----ccccCCCcEEEecccccCC--------Ccccccc---cc--eEEecccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN---Y-----IPDSQGIPLVSDMSSNFLS--------RKFDVSK---FG--VIIAGAQK 328 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p---~-----i~~~~g~llvvDavSs~G~--------~pIDv~~---~g--vl~asaqK 328 (621)
+++++++|.+++..|.||...| + +++++|+++|+|.+++.+. ...++.. .+ +++.|.+|
T Consensus 174 l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK 253 (416)
T 1bw0_A 174 KDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAK 253 (416)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTT
T ss_pred hccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchh
Confidence 4567899999999999999988 2 3457899999999998732 2233432 22 66778899
Q ss_pred ccCCCc--cEEEEEchh--HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 329 NIGPAG--ITVVIVRED--LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 329 ~lGP~G--lg~livr~~--ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
++|.+| +|+++.+++ +.+++.. . ... ......++|....+++.++|+.+.+. +++++.++.+++.+
T Consensus 254 ~~~~~Glr~G~~~~~~~~~~~~~~~~---~---~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~ 323 (416)
T 1bw0_A 254 NLVVPGWRLGWLLYVDPHGNGPSFLE---G---LKR---VGMLVCGPCTVVQAALGEALLNTPQE-HLDQIVAKIEESAM 323 (416)
T ss_dssp TTSCGGGCCEEEEEECTTCSCHHHHH---H---HHH---HHHHHTCSCHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHH
T ss_pred hCCCCCceEEEEEeeCchhhHHHHHH---H---HHH---HhccccCCCcHHHHHHHHHHhcccHH-HHHHHHHHHHHHHH
Confidence 998788 799998774 4332210 0 000 01123567778888888887754333 58888899999999
Q ss_pred HHHHHHHccCCcc
Q psy8733 405 LLYQEIDNSDKFY 417 (621)
Q Consensus 405 ~L~e~L~~~~g~~ 417 (621)
++++.|++++|+.
T Consensus 324 ~l~~~L~~~~g~~ 336 (416)
T 1bw0_A 324 YLYNHIGECIGLA 336 (416)
T ss_dssp HHHHHHTTSTTEE
T ss_pred HHHHHHHhCCCCc
Confidence 9999998876554
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-13 Score=140.59 Aligned_cols=249 Identities=10% Similarity=-0.017 Sum_probs=157.5
Q ss_pred CceeccCCC--CCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhC------CCCCCEEEEEcC
Q psy8733 51 PVINFGAGP--AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLN------VPNNYKILFLQG 122 (621)
Q Consensus 51 ~~~lf~aGP--s~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~------~p~~yeI~f~~g 122 (621)
.++.|+.|. .+.|++|++++.+.+.+. ..+... . - .+.|+.++++++ ++.+ +|+|+ +
T Consensus 24 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~---------~~~y~~-~--~-~~lr~~la~~~~~~~~~~~~~~-~i~~t-~ 88 (377)
T 3fdb_A 24 GVLPLWVAESDFSTCPAVLQAITDAVQRE---------AFGYQP-D--G-SLLSQATAEFYADRYGYQARPE-WIFPI-P 88 (377)
T ss_dssp TSEECCSSCCCSCCCHHHHHHHHHHHHTT---------CCSSCC-S--S-CCHHHHHHHHHHHHHCCCCCGG-GEEEE-S
T ss_pred CeeeecccCCCCCCCHHHHHHHHHHHHcC---------CCCCCC-C--C-HHHHHHHHHHHHHHhCCCCCHH-HEEEe-C
Confidence 444555443 357899999999987541 011111 0 1 445666666665 5443 68876 6
Q ss_pred CcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccc
Q psy8733 123 GGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKV 202 (621)
Q Consensus 123 ggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~ 202 (621)
|||+ ++++ ++..+..+|+++.+..+++.+. ...++..|...+..+..
T Consensus 89 g~~~-----a~~~--------------------------~~~~~~~~gd~vl~~~~~~~~~--~~~~~~~g~~~~~~~~~ 135 (377)
T 3fdb_A 89 DVVR-----GLYI--------------------------AIDHFTPAQSKVIVPTPAYPPF--FHLLSATQREGIFIDAT 135 (377)
T ss_dssp CHHH-----HHHH--------------------------HHHHHSCTTCCEEEEESCCTHH--HHHHHHHTCCEEEEECT
T ss_pred ChHH-----HHHH--------------------------HHHHhcCCCCEEEEcCCCcHhH--HHHHHHcCCEEEEccCC
Confidence 7888 3333 3444556677777666665553 44566777643322210
Q ss_pred ccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecc
Q psy8733 203 SKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDN 282 (621)
Q Consensus 203 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thn 282 (621)
+. +++|++ +. .+++++++|.+++.
T Consensus 136 --------------------------------~~--~d~~~l---------------------~~-~l~~~~~~v~i~~p 159 (377)
T 3fdb_A 136 --------------------------------GG--INLHDV---------------------EK-GFQAGARSILLCNP 159 (377)
T ss_dssp --------------------------------TS--CCHHHH---------------------HH-HHHTTCCEEEEESS
T ss_pred --------------------------------CC--CCHHHH---------------------HH-HhccCCCEEEEeCC
Confidence 00 222221 00 13346889999999
Q ss_pred cccccccccc--------ccccCCCcEEEeccccc----C-CCcccccc---cc--eEEeccccccCCCc--cEEEEE-c
Q psy8733 283 ETVDGVEFNY--------IPDSQGIPLVSDMSSNF----L-SRKFDVSK---FG--VIIAGAQKNIGPAG--ITVVIV-R 341 (621)
Q Consensus 283 ET~tGv~~p~--------i~~~~g~llvvDavSs~----G-~~pIDv~~---~g--vl~asaqK~lGP~G--lg~liv-r 341 (621)
.|.+|...|. +++++|+++|+|.+++. | ..+.++.. .+ +++.|.+|++|++| +|++++ +
T Consensus 160 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 239 (377)
T 3fdb_A 160 YNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSN 239 (377)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCC
Confidence 9999999873 34689999999999987 3 33445544 33 77889999998777 687776 6
Q ss_pred hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc-cCCcc
Q psy8733 342 EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN-SDKFY 417 (621)
Q Consensus 342 ~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~-~~g~~ 417 (621)
+++.+.+... ......++|....+++.++++...+ .++.+.++.+++.+++++.|++ ++|+.
T Consensus 240 ~~~~~~~~~~------------~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 302 (377)
T 3fdb_A 240 PSDAEHWQQL------------SPVIKDGASTLGLIAAEAAYRYGTD--FLNQEVAYLKNNHDFLLHEIPKRIPGAK 302 (377)
T ss_dssp HHHHHHHHHS------------CHHHHCCCCHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred HHHHHHHHHH------------HHhhcCCCCHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 7776654321 1112356777788887777775433 4788899999999999999988 56554
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-13 Score=139.55 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=86.0
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccC------CCcccc---cccceEEeccccccCCCcc
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL------SRKFDV---SKFGVIIAGAQKNIGPAGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G------~~pIDv---~~~gvl~asaqK~lGP~Gl 335 (621)
++++|.+++.. .+|...+. +++++|+++|+|.++..+ ..+..+ ...++++.|.||+.+|.|.
T Consensus 141 ~~~~v~~~~~~-~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~g~~~G~ 219 (356)
T 1v72_A 141 QPACVSITQAT-EVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAE 219 (356)
T ss_dssp EEEEEEEESSC-TTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCE
T ss_pred CceEEEEEcCC-CCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccCCCcCcc
Confidence 68999999854 48996552 346899999999988632 222222 1456888899999449899
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
|+++.++++++++.. +... .....++ ..+++..+++++.+. ..+.+.++.+++++++++.|++++|
T Consensus 220 g~~~~~~~~~~~~~~-------~~~~---~~~~~~~---~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~~g 285 (356)
T 1v72_A 220 AIVLFNTSLATEMSY-------RRKR---AGHLSSK---MRFLSAQIDAYLTDD-LWLRNARKANAAAQRLAQGLEGLGG 285 (356)
T ss_dssp EEEESSGGGHHHHHH-------HHHH---TTCCCSS---THHHHHHHHHHTSTT-HHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred EEEEECHHHHhhHHH-------Hhhc---cCchhhh---HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999998876531 0000 0111122 223444456666542 4667778888899999999988765
Q ss_pred cc
Q psy8733 416 FY 417 (621)
Q Consensus 416 ~~ 417 (621)
+.
T Consensus 286 ~~ 287 (356)
T 1v72_A 286 VE 287 (356)
T ss_dssp EE
T ss_pred cE
Confidence 54
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=143.60 Aligned_cols=130 Identities=14% Similarity=0.154 Sum_probs=98.1
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-----cccccccceEEecccccc-CCCccEEEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-----KFDVSKFGVIIAGAQKNI-GPAGITVVIV 340 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-----pIDv~~~gvl~asaqK~l-GP~Glg~liv 340 (621)
+++++|.+++..+ |+..|+ +++++|+++|+|.+++.|.. +.++...|++++|.||++ ||.| |+++.
T Consensus 163 ~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~ 239 (417)
T 3n0l_A 163 EKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRG-GIIMT 239 (417)
T ss_dssp HCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCSC-EEEEE
T ss_pred cCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCCe-eEEEE
Confidence 4688898877554 888885 45688999999999876544 555555679999999999 5776 99999
Q ss_pred c-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 341 R-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 341 r-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
+ +++.+++... ......++|+...+.++.++++...+. +++.+.++..++++++.+.|.+. |+.
T Consensus 240 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~aa~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~ 304 (417)
T 3n0l_A 240 NDEELAKKINSA-----------IFPGIQGGPLMHVIAAKAVGFKFNLSD-EWKVYAKQVRTNAQVLANVLMDR-KFK 304 (417)
T ss_dssp SCHHHHHHHHHH-----------HTTTTCSSCCHHHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred CCHHHHHHHhhh-----------hCCcccCCcHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHhC-Cce
Confidence 8 6776655220 112335678888888988888876555 68899999999999999999884 343
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.9e-14 Score=146.83 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=95.7
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccc-----cccceEEecccccc-CCCccEEEEEc
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDV-----SKFGVIIAGAQKNI-GPAGITVVIVR 341 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv-----~~~gvl~asaqK~l-GP~Glg~livr 341 (621)
++++|.+++..+ |...|+ +++++|+++|+|.+++.|..+.+. +..++++.|.||++ ||.| |+++.+
T Consensus 163 ~~~~v~~~~p~~--~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~ 239 (407)
T 2dkj_A 163 RPKVIVAGASAY--PRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSN 239 (407)
T ss_dssp CCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEES
T ss_pred CCeEEEEecccc--CCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEEC
Confidence 678888844333 566664 456789999999999874433222 22458899999999 5887 999999
Q ss_pred -hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 342 -EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 342 -~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
+++.+++.+.. .....+|++...+.++.++++++.+. +++++.++.+++++++++.|+++ |+.
T Consensus 240 ~~~~~~~l~~~~-----------~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~ 303 (407)
T 2dkj_A 240 DPELGKRIDKLI-----------FPGIQGGPLEHVIAGKAVAFFEALQP-EFKEYSRLVVENAKRLAEELARR-GYR 303 (407)
T ss_dssp CHHHHHHHHHHH-----------TTTTCSSCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred CHHHHHHHHhhh-----------cccccCCCcHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhC-Cce
Confidence 78877653210 12234678888888888999998666 78999999999999999999987 454
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-12 Score=137.35 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=94.0
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----cccccc----cc--eEEeccccccCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----KFDVSK----FG--VIIAGAQKNIGP 332 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----pIDv~~----~g--vl~asaqK~lGP 332 (621)
++++++|.+++..|.||...+. +++++|+++|+|.+++.+.. +.++.. .+ +++.|.+|++|+
T Consensus 170 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 249 (412)
T 2x5d_A 170 IPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNM 249 (412)
T ss_dssp ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSC
T ss_pred ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCC
Confidence 3578999999999999998873 34578999999999998642 233332 24 889999999998
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++.++++++++... . .....+++....+++.++|+... . .++.+.++.+++.+++++.|
T Consensus 250 ~G~r~G~~~~~~~~~~~l~~~-------~-----~~~~~~~~~~~~~a~~~~l~~~~-~-~~~~~~~~~~~~~~~l~~~L 315 (412)
T 2x5d_A 250 AGWRIGFMVGNPELVSALARI-------K-----SYHDYGTFTPLQVAAIAALEGDQ-Q-CVRDIARQYQQRRDVLVKGL 315 (412)
T ss_dssp TTSCCEEEEECHHHHHHHHHH-------H-----HHHCCCCCHHHHHHHHHHHHSCS-H-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEcCHHHHHHHHHH-------H-----hhhccCCCHHHHHHHHHHHhCCH-H-HHHHHHHHHHHHHHHHHHHH
Confidence 88 69999999988765320 0 11124566667777666665432 2 47888889999999999999
Q ss_pred Hcc
Q psy8733 411 DNS 413 (621)
Q Consensus 411 ~~~ 413 (621)
+++
T Consensus 316 ~~~ 318 (412)
T 2x5d_A 316 REA 318 (412)
T ss_dssp HHH
T ss_pred HHC
Confidence 886
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-12 Score=134.79 Aligned_cols=134 Identities=13% Similarity=0.152 Sum_probs=93.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----c---ccccc--c--ceEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----K---FDVSK--F--GVIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----p---IDv~~--~--gvl~asaqK~l 330 (621)
+++++++|.+++..|.||...|. +++++|+++|+|.+++.+.. + ..++. + ++++.|.+|++
T Consensus 160 l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~ 239 (388)
T 1j32_A 160 ITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY 239 (388)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT
T ss_pred cCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhcc
Confidence 45679999999999999998762 34578999999999876432 1 12221 3 38899999999
Q ss_pred CCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 331 GPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 331 GP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
|++| +|+++.++++.+++.+. .....+++++ ...+++.++|+.. +. .++.+.++.+++.+++++
T Consensus 240 ~~~G~r~G~~~~~~~~~~~l~~~-----------~~~~~~~~~~-~~~~a~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~ 305 (388)
T 1j32_A 240 AMTGWRVGFLAGPVPLVKAATKI-----------QGHSTSNVCT-FAQYGAIAAYENS-QD-CVQEMLAAFAERRRYMLD 305 (388)
T ss_dssp TCTTTCCEEEECCHHHHHHHHHH-----------HHTTTCSCCH-HHHHHHHHHHHSC-SH-HHHHHHHHHHHHHHHHHH
T ss_pred CCcccceEEEEeCHHHHHHHHHH-----------HhhcccCCCH-HHHHHHHHHHhCC-cH-HHHHHHHHHHHHHHHHHH
Confidence 9999 99999999987765320 0122344443 3334444444421 11 377888899999999999
Q ss_pred HHHccCCcc
Q psy8733 409 EIDNSDKFY 417 (621)
Q Consensus 409 ~L~~~~g~~ 417 (621)
.|++++|+.
T Consensus 306 ~L~~~~g~~ 314 (388)
T 1j32_A 306 ALNAMPGLE 314 (388)
T ss_dssp HHHTCTTCB
T ss_pred HHhhCCCCc
Confidence 999876554
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-14 Score=155.06 Aligned_cols=103 Identities=57% Similarity=0.950 Sum_probs=96.4
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
+|++++|+||++||.|++++++|++++++..+..|.+++|.....++++++|||++.||.++..|+|+++.||+++++++
T Consensus 198 ~~~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~ 277 (377)
T 3e77_A 198 FGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKL 277 (377)
T ss_dssp CSEEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cCEEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 56789999999999999999999999999888899999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcccccC
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPV 551 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v 551 (621)
.+++++.+|+.|++.++|+..++
T Consensus 278 ~~~l~~~l~~~L~~~~g~~~~~~ 300 (377)
T 3e77_A 278 SSIKSQTIYEIIDNSQGFYVCPV 300 (377)
T ss_dssp HHHHHHHHHHHHHTSTTSEECCS
T ss_pred HHHHHHHHHHHHHhcCCceecCC
Confidence 99999999999999888775553
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-12 Score=133.30 Aligned_cols=126 Identities=10% Similarity=0.078 Sum_probs=87.8
Q ss_pred CCCCceEEEEecccccccccccc-----cccc-CCCcEEEecccccCCCcccccccc--eEEeccccccC-CCc--cEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDS-QGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAG--ITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~-~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~G--lg~l 338 (621)
+++++++|.+++..|.+|...|+ ++++ +|+++|+|.+++.|..+.++ +++ +++.|.||++| |.| .|++
T Consensus 80 i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~~~~~r~~G~~ 158 (331)
T 1pff_A 80 LKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYINGHTDVVAGLV 158 (331)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTSSSSSCCCEEE
T ss_pred hcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-hcCCcEEEEECccccCCCCCceEEEE
Confidence 45689999999999999999985 4578 99999999999988754444 344 89999999997 666 7999
Q ss_pred EEch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 339 IVRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 339 ivr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+.++ ++.+++.+....+ ...+++....+++..+++++... .+. ..+..+.+.+.+++.
T Consensus 159 ~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~--~~~----~~~~~~~~~~~l~~~ 217 (331)
T 1pff_A 159 CSRADIIAKVKSQGIKDI-----------TGAIISPHDAWLITRGTLTLDMR--VKR----AAENAQKVAEFLHEH 217 (331)
T ss_dssp EECHHHHHHHHHTCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHC
T ss_pred EeCcHHHHHHHHHHHHhh-----------cCCCCCHHHHHHHHcCcchHHHH--HHH----HHHHHHHHHHHHHcC
Confidence 9998 8877764422110 11355666666666777765432 333 333444455555544
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-12 Score=136.01 Aligned_cols=263 Identities=9% Similarity=0.069 Sum_probs=144.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHh
Q psy8733 57 AGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLI 136 (621)
Q Consensus 57 aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNll 136 (621)
|...++|++|++++.+.+.+.. .+.. .+. ....++.++.++.+++++|++ +++|+ ++||+ +++++
T Consensus 9 p~~~~~~~~~~~a~~~~~~~~~-~~~~----~~~-~g~~~l~~~l~~~la~~~g~~---~~i~~-~~gt~-----al~~~ 73 (418)
T 2c81_A 9 PEWPQHSDRTRRKIEEVFQSNR-WAIS----GYW-TGEESMERKFAKAFADFNGVP---YCVPT-TSGST-----ALMLA 73 (418)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTC-CSTT----SBC-CSSCCHHHHHHHHHHHHHTCS---EEEEE-SCHHH-----HHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCC-cccc----Ccc-cCCHHHHHHHHHHHHHHhCCC---cEEEe-CCHHH-----HHHHH
Confidence 4455678999999999886531 1100 111 001345788999999999986 36666 56788 56665
Q ss_pred hhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCC
Q psy8733 137 SSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNR 216 (621)
Q Consensus 137 a~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~ 216 (621)
...+++++||+|++... ++.+. ...++..|...+..+..
T Consensus 74 ~~~~~~~~gd~Vl~~~~-------------------------~~~~~--~~~~~~~g~~~~~~~~~-------------- 112 (418)
T 2c81_A 74 LEALGIGEGDEVIVPSL-------------------------TWIAT--ATAVLNVNALPVFVDVE-------------- 112 (418)
T ss_dssp HHHTTCCTTCEEEEESS-------------------------SCTHH--HHHHHHTTCEEEEECBC--------------
T ss_pred HHHcCCCCcCEEEECCC-------------------------ccHhH--HHHHHHcCCEEEEEecC--------------
Confidence 55555566666666543 22222 22344566543322210
Q ss_pred CCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc----
Q psy8733 217 DPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY---- 292 (621)
Q Consensus 217 ~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~---- 292 (621)
...|. ++++++ + -.+++++++|.++| .+|...++
T Consensus 113 ---------------~~~~~--~d~~~l---------------------~-~~i~~~~~~v~~~~---~~G~~~~~~~i~ 150 (418)
T 2c81_A 113 ---------------ADTYC--IDPQLI---------------------K-SAITDKTKAIIPVH---LFGSMANMDEIN 150 (418)
T ss_dssp ---------------TTTCS--BCHHHH---------------------G-GGCCTTEEEECCBC---CTTCCCCHHHHH
T ss_pred ---------------CCCCC--cCHHHH---------------------H-HhhCCCCeEEEEeC---CcCCcccHHHHH
Confidence 00000 112221 1 12456788888764 67988775
Q ss_pred -ccccCCCcEEEecccccCCCccc---cccc---ceEEeccccccCCCccEEEEEc-hhHHhhhCCCCCceeecccc-cc
Q psy8733 293 -IPDSQGIPLVSDMSSNFLSRKFD---VSKF---GVIIAGAQKNIGPAGITVVIVR-EDLLEYALPITPTVFHFKIN-AD 363 (621)
Q Consensus 293 -i~~~~g~llvvDavSs~G~~pID---v~~~---gvl~asaqK~lGP~Glg~livr-~~ll~~~~~~~P~~ld~~~~-~~ 363 (621)
+++++|+++|+|.+++.+.. ++ +..+ ++..+++||++|+...|+++.+ +++.+++.+........... ..
T Consensus 151 ~~~~~~~~~li~D~a~~~~~~-~~~~~~~~~~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 229 (418)
T 2c81_A 151 EIAQEHNLFVIEDCAQSHGSV-WNNQRAGTIGDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSE 229 (418)
T ss_dssp HHHHHTTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGG
T ss_pred HHHHHCCCEEEEECcccccCc-cCCEecccccceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccccccccc
Confidence 45689999999999999874 22 2222 2445566999987345677774 67766654311000000000 00
Q ss_pred CCCcc----CCchHHH----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 364 NNSVY----NTPPTFV----VHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 364 ~~s~~----~TP~v~~----I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
....+ +|+.+.+ +-.+.+++...... +++.+.++.+++++++++.|.+++|+...
T Consensus 230 ~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 292 (418)
T 2c81_A 230 LMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQ-ELDDKNAIREKNAMFLNDALSKIDGIKVM 292 (418)
T ss_dssp CCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTTSTTEEEC
T ss_pred cccchhhccccccccCcCCCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCcccC
Confidence 00001 0111110 00112222222223 57888888899999999999988766543
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.8e-13 Score=140.63 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=89.0
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-----cccccccceEEecccccc-CCCccEEEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-----KFDVSKFGVIIAGAQKNI-GPAGITVVIV 340 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-----pIDv~~~gvl~asaqK~l-GP~Glg~liv 340 (621)
+++++|++++..+ |...++ +++++|+++|+|.+|+.|.. +-.+...|+++.|.||++ ||.| |+++.
T Consensus 171 ~~~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-g~~~~ 247 (425)
T 3ecd_A 171 HKPSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRG-GFVLT 247 (425)
T ss_dssp HCCSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEE
T ss_pred cCCcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCc-EEEEe
Confidence 4688999885444 666554 45688999999999865543 222334579999999999 5765 88888
Q ss_pred ch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 341 RE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 341 r~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++ ++.+.+.+ .......++|+...+.++..++..+.+. +++.+.++.+++.+++++.|.+.+
T Consensus 248 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g 310 (425)
T 3ecd_A 248 NDEEIAKKINS-----------AVFPGLQGGPLMHVIAGKAVAFGEALTD-DFKTYIDRVLANAQALGDVLKAGG 310 (425)
T ss_dssp SCHHHHHHHHH-----------HHC-----CCCHHHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHh-----------hhCccccCCccHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 84 55544321 0112233577788888888888776555 688999999999999999998853
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-12 Score=135.47 Aligned_cols=133 Identities=14% Similarity=0.173 Sum_probs=94.8
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC---ccccccc--c--eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR---KFDVSKF--G--VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~---pIDv~~~--g--vl~asaqK~lGP~G 334 (621)
+++++++|.+|+.+|+||..++. +++++|+++|+|.+++-+.. ..++..+ + +++.|.+|++|++|
T Consensus 161 l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 240 (385)
T 1b5p_A 161 ITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG 240 (385)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG
T ss_pred cCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcc
Confidence 45678999999999999998772 34578999999999886543 2334433 4 77888899999889
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW---IKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~---i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+|+++.++++++++.+. . .... .+++.....++.++|+. ..+ .++++.++.+++.+++++.
T Consensus 241 ~RiG~~~~~~~~~~~l~~~-------~----~~~~-~~~~~~~~~a~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 306 (385)
T 1b5p_A 241 WRIGYACGPKEVIKAMASV-------S----RQST-TSPDTIAQWATLEALTNQEASRA--FVEMAREAYRRRRDLLLEG 306 (385)
T ss_dssp GCCEEEECCHHHHHHHHHH-------H----HTTT-CSCCHHHHHHHHHHHHCHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCHHHHHHHHHH-------H----hhcc-CCCCHHHHHHHHHHHhCCCcchH--HHHHHHHHHHHHHHHHHHH
Confidence 89999999887765320 0 0112 23445555566666653 222 3778888889999999999
Q ss_pred HHccCCcc
Q psy8733 410 IDNSDKFY 417 (621)
Q Consensus 410 L~~~~g~~ 417 (621)
|+++ |+.
T Consensus 307 L~~~-g~~ 313 (385)
T 1b5p_A 307 LTAL-GLK 313 (385)
T ss_dssp HHHH-TCC
T ss_pred HHHC-CCe
Confidence 9887 453
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-12 Score=136.62 Aligned_cols=132 Identities=14% Similarity=0.102 Sum_probs=92.8
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccc-cC---CCccccccc----c--eEEeccccccCCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN-FL---SRKFDVSKF----G--VIIAGAQKNIGPA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs-~G---~~pIDv~~~----g--vl~asaqK~lGP~ 333 (621)
+++++|++++..|.||...|. +++++|+++|+|.+++ ++ ..+.++..+ + +++.|.+|++|++
T Consensus 162 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 241 (400)
T 3asa_A 162 THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFA 241 (400)
T ss_dssp CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTT
T ss_pred cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCc
Confidence 578999999999999999873 3457899999999998 53 334455332 3 7789999999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeecccc--ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKIN--ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~--~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
| +|++++++++.+... .+.... ......++|+|.....++.++|+.. .++.+.++.+++.+++++.
T Consensus 242 GlriG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~l~~~ 311 (400)
T 3asa_A 242 GIRLGWTVIPQELTYADG------HFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL----PQLEAIHYYRENSDLLRKA 311 (400)
T ss_dssp TCCCEEEECCTTCBCTTS------CBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHH
T ss_pred chheeEEeeChhhccchh------hhHHHHHHHHhccCccCCChHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHH
Confidence 8 699999988731110 000000 0011234577777777766666532 4778888999999999999
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 312 L~~~ 315 (400)
T 3asa_A 312 LLAT 315 (400)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 9886
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-12 Score=134.10 Aligned_cols=250 Identities=14% Similarity=0.121 Sum_probs=144.3
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
+.|+. |. +|++|++++.+.+.+... . . ...+.+.|+.++++++.+ +++|+ +|||+ +
T Consensus 11 i~~~~-p~-~~~~~~~a~~~~~~~~~~--------~-~----~~~~~~l~~~la~~~~~~---~~~~~-~~gt~-----a 66 (393)
T 1mdo_A 11 LPFSR-PA-MGAEELAAVKTVLDSGWI--------T-T----GPKNQELEAAFCRLTGNQ---YAVAV-SSATA-----G 66 (393)
T ss_dssp BCSCC-CC-CCHHHHHHHHHHHHHTCC--------S-S----SHHHHHHHHHHHHHHCCS---EEEEE-SCHHH-----H
T ss_pred cccCC-CC-CCHHHHHHHHHHHhcCCc--------C-C----ChHHHHHHHHHHHHhCCC---cEEEe-cChHH-----H
Confidence 34443 54 788999999988754210 1 1 246788999999999985 57876 67888 5
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
++++...+++++||+|++... ++.+. ...++..|...+..+..
T Consensus 67 l~~~~~~~~~~~gd~Vl~~~~-------------------------~~~~~--~~~~~~~g~~~~~v~~~---------- 109 (393)
T 1mdo_A 67 MHIALMALGIGEGDEVITPSM-------------------------TWVST--LNMIVLLGANPVMVDVD---------- 109 (393)
T ss_dssp HHHHHHHTTCCTTCEEEEESS-------------------------SCHHH--HHHHHHTTCEEEEECBC----------
T ss_pred HHHHHHHcCCCCCCEEEeCCC-------------------------ccHhH--HHHHHHCCCEEEEEecc----------
Confidence 555554455556666665543 33322 23445566543322210
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
+ ++ | .++++++ + -.+++++++|.+++ ++|...|+
T Consensus 110 ~--~~-----------------~--~~d~~~l---------------------~-~~l~~~~~~v~~~~---~~G~~~~~ 143 (393)
T 1mdo_A 110 R--DT-----------------L--MVTPEHI---------------------E-AAITPQTKAIIPVH---YAGAPADL 143 (393)
T ss_dssp T--TT-----------------C--CBCHHHH---------------------H-HHCCTTEEEECCBC---GGGCCCCH
T ss_pred C--Cc-----------------C--CCCHHHH---------------------H-HhcCCCceEEEEeC---CCCCcCCH
Confidence 0 00 0 0111221 0 12445788888875 68998875
Q ss_pred -----ccccCCCcEEEecccccCCCcccccc---cceEEeccc--cccCCCccEEEEEc-hhHHhhhCCCCC-ce-ee-c
Q psy8733 293 -----IPDSQGIPLVSDMSSNFLSRKFDVSK---FGVIIAGAQ--KNIGPAGITVVIVR-EDLLEYALPITP-TV-FH-F 358 (621)
Q Consensus 293 -----i~~~~g~llvvDavSs~G~~pIDv~~---~gvl~asaq--K~lGP~Glg~livr-~~ll~~~~~~~P-~~-ld-~ 358 (621)
+++++|+++|+|.+++.|..+ +... .+++++|.| |++++...|+++.+ +++++++.+... .. .+ +
T Consensus 144 ~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~ 222 (393)
T 1mdo_A 144 DAIYALGERYGIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAW 222 (393)
T ss_dssp HHHHHHHHHHTCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC--
T ss_pred HHHHHHHHHcCCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccch
Confidence 456789999999999987643 1111 458888988 99975556788876 677776543111 00 00 0
Q ss_pred ccc-ccCCC-----ccC----CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 359 KIN-ADNNS-----VYN----TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 359 ~~~-~~~~s-----~~~----TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
... ..... +.+ .+++...++ +.++. +++++.++.+++++++++.|.+++ +..
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~----~~~l~---~~~~~~~~~~~~~~~l~~~L~~~~-~~~ 284 (393)
T 1mdo_A 223 DRQSGGRAPQAEVLAPGYKYNLPDLNAAIA----LAQLQ---KLDALNARRAAIAAQYHQAMADLP-FQP 284 (393)
T ss_dssp ---------CCEESSCCCBCCCCHHHHHHH----HHHHH---THHHHHHHHHHHHHHHHHHHHTSS-CEE
T ss_pred hhhcccccccccccccCccCCCCHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHhcCC-ccc
Confidence 000 00000 112 233333322 22332 477888888889999999999876 543
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.2e-13 Score=142.37 Aligned_cols=260 Identities=14% Similarity=0.102 Sum_probs=160.7
Q ss_pred CceeccCCC--CCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCcchh
Q psy8733 51 PVINFGAGP--AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP-NNYKILFLQGGGTGM 127 (621)
Q Consensus 51 ~~~lf~aGP--s~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p-~~yeI~f~~gggT~~ 127 (621)
.++.|..|- -+.|++|++++.+.+.+. ..+. ... ..+..+++++.+++.++.+ +..+|+|+ +|+|++
T Consensus 62 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~y-----~~~---~~~l~~~l~~~l~~~~g~~~~~~~v~~~-~g~~ea 131 (421)
T 3l8a_A 62 ELLQMWVADMDFLPVPEIKEAIINYGREH-IFGY-----NYF---NDDLYQAVIDWERKEHDYAVVKEDILFI-DGVVPA 131 (421)
T ss_dssp TCEECCSSCCCSCCCHHHHHHHHHHHHHC-CSSC-----BCC---CHHHHHHHHHHHHHHHCCCCCGGGEEEE-SCHHHH
T ss_pred CeeecccCCCCCCCCHHHHHHHHHHHhcC-CcCC-----CCC---CHHHHHHHHHHHHHHhCCCCCHHHEEEc-CCHHHH
Confidence 444555443 246899999999987531 1110 111 1466778888889998842 12368776 678883
Q ss_pred hhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccc
Q psy8733 128 FAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 128 ~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
+++ ++..+..+|+++.+..+++.+ +...++..|...+..+..
T Consensus 132 ~~~-------------------------------a~~~~~~~gd~Vi~~~~~y~~--~~~~~~~~g~~~~~~~~~----- 173 (421)
T 3l8a_A 132 ISI-------------------------------ALQAFSEKGDAVLINSPVYYP--FARTIRLNDHRLVENSLQ----- 173 (421)
T ss_dssp HHH-------------------------------HHHHHSCTEEEEEEEESCCHH--HHHHHHHTTEEEEEEECE-----
T ss_pred HHH-------------------------------HHHHhcCCCCEEEECCCCcHH--HHHHHHHCCCEEEecccc-----
Confidence 332 333444555665555555544 334555666432222100
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCC-CCceEEEEecccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRD-PEASYLYYCDNETVD 286 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~-~~t~~V~~thnET~t 286 (621)
.-++.|. ++.|++ ++ .+. +++++|.+++..+.+
T Consensus 174 ----------------------~~~~~~~--~d~~~l---------------------e~-~i~~~~~~~vil~~p~npt 207 (421)
T 3l8a_A 174 ----------------------IINGRFE--IDFEQL---------------------EK-DIIDNNVKIYLLCSPHNPG 207 (421)
T ss_dssp ----------------------EETTEEE--CCHHHH---------------------HH-HHHHTTEEEEEEESSBTTT
T ss_pred ----------------------ccCCCee--eCHHHH---------------------HH-HhhccCCeEEEECCCCCCC
Confidence 0000110 112221 11 133 679999999999999
Q ss_pred cccccc--------ccccCCCcEEEecccccCC----Ccccccc-----cc--eEEeccccccCCCcc--EEEEEc-hhH
Q psy8733 287 GVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVSK-----FG--VIIAGAQKNIGPAGI--TVVIVR-EDL 344 (621)
Q Consensus 287 Gv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~~-----~g--vl~asaqK~lGP~Gl--g~livr-~~l 344 (621)
|...+. +++++|+++|+|.+++.+. ....+.. .+ +.+.|.+|++|++|+ |+++++ +++
T Consensus 208 G~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l 287 (421)
T 3l8a_A 208 GRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESL 287 (421)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHH
Confidence 988652 3567899999999987632 2222222 23 788999999997775 999998 777
Q ss_pred HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 345 LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 345 l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.+.+.+. .....++++|..+++++.++++...+ .++++.++.+++.+++++.|++.+++.
T Consensus 288 ~~~~~~~-----------~~~~~~~~~n~~~~~a~~aal~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~i~ 347 (421)
T 3l8a_A 288 RRKFQYR-----------QLANNQHEVPTVGMIATQAAFQYGKP--WLEELKTVIEGNIKLVIKELEAKTKIK 347 (421)
T ss_dssp HHHHHHH-----------HHHTTCSCCCHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHHHCSCE
T ss_pred HHHHHHH-----------HHhcccCCCCHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 6654210 01123567888899998888886433 478889999999999999998865443
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.6e-12 Score=131.57 Aligned_cols=240 Identities=13% Similarity=0.155 Sum_probs=146.8
Q ss_pred CceeccCC--CCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 51 PVINFGAG--PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 51 ~~~lf~aG--Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
.++.|+.| |.+.|++|++++.+.+..+...+ . . ...+.|+.++++++++.+ +|+|+ +|+|+
T Consensus 16 ~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~-------~--~----~~~~lr~~la~~~~~~~~-~i~~t-~g~~~-- 78 (350)
T 3fkd_A 16 EIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYP-------E--P----DAGTLRQMLAKRNSVDNN-AILVT-NGPTA-- 78 (350)
T ss_dssp CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCC-------C--T----TCHHHHHHHHHHTTCCGG-GEEEE-SHHHH--
T ss_pred cEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCC-------C--C----cHHHHHHHHHHHhCcCHH-HEEEc-CCHHH--
Confidence 45555555 45678999999998774332211 1 1 124689999999998654 68887 67888
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
+++++... +. ||++.+..+++.+ +...++..|...+..+..
T Consensus 79 ---al~~~~~~--------------------------l~--gd~Vi~~~p~~~~--~~~~~~~~g~~~~~v~~~------ 119 (350)
T 3fkd_A 79 ---AFYQIAQA--------------------------FR--GSRSLIAIPSFAE--YEDACRMYEHEVCFYPSN------ 119 (350)
T ss_dssp ---HHHHHHHH--------------------------TT--TCEEEEEESCCHH--HHHHHHHTTCEEEEEETT------
T ss_pred ---HHHHHHHH--------------------------HC--CCEEEEeCCCcHH--HHHHHHHcCCeEEEEecC------
Confidence 45543332 22 4444444444443 234566667543222100
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV 288 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv 288 (621)
++.+.+.. +++++|.+++..|.||.
T Consensus 120 ------------------------------------------------------~~~~~~~~-~~~~~v~i~~p~nptG~ 144 (350)
T 3fkd_A 120 ------------------------------------------------------EDIGEADF-SNMDFCWLCNPNNPDGR 144 (350)
T ss_dssp ------------------------------------------------------SCGGGSCC-TTCSEEEEESSCTTTCC
T ss_pred ------------------------------------------------------CccccCcc-CCCCEEEEeCCCCCcCC
Confidence 00011111 57899999999999999
Q ss_pred cccc-----ccccC-CCcEEEecccccCCCc-----ccccccc--eEEeccccccCCCc--cEEEEEchhHHhhhCCCCC
Q psy8733 289 EFNY-----IPDSQ-GIPLVSDMSSNFLSRK-----FDVSKFG--VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITP 353 (621)
Q Consensus 289 ~~p~-----i~~~~-g~llvvDavSs~G~~p-----IDv~~~g--vl~asaqK~lGP~G--lg~livr~~ll~~~~~~~P 353 (621)
..|. +.+.. ..++|+|.+++..... ..++.++ +++.|.+|++|++| +|+++.++++.+++....
T Consensus 145 ~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~- 223 (350)
T 3fkd_A 145 LLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFS- 223 (350)
T ss_dssp CCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhC-
Confidence 9985 33322 3599999998754322 2333444 77889999999666 799999999887764311
Q ss_pred ceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 354 TVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 354 ~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
...+++.....++.++|+...+. .+.+.+.. ++.+++++.|++++|+..
T Consensus 224 -------------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~-~~~~~l~~~L~~~~~~~~ 272 (350)
T 3fkd_A 224 -------------TPWAVNALAIEAAKFILIHPAQF--TLPIRKWQ-RNTVDFITALNRLDGVEV 272 (350)
T ss_dssp -------------CTTCSCHHHHHHHHHHHHCTTTT--CCCHHHHH-HHHHHHHHHHHHSTTEEE
T ss_pred -------------CCCCCCHHHHHHHHHHHhCHHHH--HHHHHHHH-HHHHHHHHHHhcCCCcEE
Confidence 13466666766666665532111 23333333 778889999988765543
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=136.51 Aligned_cols=130 Identities=8% Similarity=0.023 Sum_probs=95.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CC--cc-ccc-ccc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SR--KF-DVS-KFG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~--pI-Dv~-~~g--vl~asaqK~lG 331 (621)
+++++++|.+++..+.||...|. +++++|+++|+|.+++.+ .. ++ +++ .++ +++.|.+|++|
T Consensus 160 l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 239 (386)
T 1u08_A 160 LSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH 239 (386)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT
T ss_pred hcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC
Confidence 45689999999999999998862 356899999999999863 22 22 222 233 88999999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
++| +|++++++++.+++... . .....+++.....++.++|+.. +. .++.+.++.+++.+++++.
T Consensus 240 ~~G~r~G~~~~~~~~~~~l~~~-------~-----~~~~~~~~~~~~~a~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~~ 305 (386)
T 1u08_A 240 MTGWKVGYCVAPAPISAEIRKV-------H-----QYLTFSVNTPAQLALADMLRAE-PE-HYLALPDFYRQKRDILVNA 305 (386)
T ss_dssp CGGGCCEEEECCHHHHHHHHHH-------H-----HHHTSSCCHHHHHHHHHHHHHC-TH-HHHTHHHHHHHHHHHHHHH
T ss_pred CcccceEEEEcCHHHHHHHHHH-------H-----HhhccCCChHHHHHHHHHHhCC-cH-HHHHHHHHHHHHHHHHHHH
Confidence 999 89999999988765320 0 0112344555666777777654 33 5788889999999999999
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|+++
T Consensus 306 L~~~ 309 (386)
T 1u08_A 306 LNES 309 (386)
T ss_dssp TTSS
T ss_pred HHHC
Confidence 8876
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-12 Score=132.25 Aligned_cols=124 Identities=8% Similarity=0.059 Sum_probs=93.9
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---ccc-cccc---eEEeccccccCCCc--cEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---FDV-SKFG---VIIAGAQKNIGPAG--ITVV 338 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---IDv-~~~g---vl~asaqK~lGP~G--lg~l 338 (621)
++++|.+++..+.||...|. +.+..++++|+|.+++.+..+ +++ +.++ +++.|.+|++|++| +|++
T Consensus 164 ~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 243 (369)
T 3cq5_A 164 QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYF 243 (369)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEE
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEE
Confidence 68899999999999999985 445567999999999987743 332 3344 88899999999778 6999
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++++++++++.... ...++|....+++.++++.. . .++.+.++.+++.+++++.|++.
T Consensus 244 ~~~~~~~~~l~~~~--------------~~~~~~~~~~~a~~~~l~~~--~-~~~~~~~~~~~~~~~l~~~L~~~ 301 (369)
T 3cq5_A 244 VANPAFIDAVMLVR--------------LPYHLSALSQAAAIVALRHS--A-DTLGTVEKLSVERVRVAARLEEL 301 (369)
T ss_dssp EECTHHHHHHHTTS--------------CTTCSCHHHHHHHHHHHHTH--H-HHHTHHHHHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHcC--------------CCCCCCHHHHHHHHHHhcCH--H-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999887664311 12356777777777777642 2 47788888899999999999875
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-12 Score=131.16 Aligned_cols=243 Identities=12% Similarity=0.089 Sum_probs=155.6
Q ss_pred CceeccCC--CCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhh
Q psy8733 51 PVINFGAG--PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMF 128 (621)
Q Consensus 51 ~~~lf~aG--Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~ 128 (621)
.++.|+.| |.+.|++|++++.+.+.++... .+ ..+.+.|+.++++++++.+ +|+|+ +|||+
T Consensus 27 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y-------~~------~~~~~l~~~la~~~~~~~~-~i~~~-~g~t~-- 89 (361)
T 3ftb_A 27 ELLDYSSNINPLGIPKSFLNNIDEGIKNLGVY-------PD------VNYRRLNKSIENYLKLKDI-GIVLG-NGASE-- 89 (361)
T ss_dssp -CEETTCCCCTTCSCHHHHTTHHHHHHGGGSC-------CC------TTCHHHHHHHHHHHTCCSC-EEEEE-SSHHH--
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHHHhcCC-------CC------ccHHHHHHHHHHHhCCCcc-eEEEc-CCHHH--
Confidence 44555555 3457899999999988653221 11 1246789999999998654 78876 67888
Q ss_pred hHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccccc
Q psy8733 129 AAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSI 208 (621)
Q Consensus 129 ~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~ 208 (621)
+++++...+ |+|++. .+++.+ +...++..|...+..+..
T Consensus 90 ---al~~~~~~~-----d~vi~~-------------------------~~~~~~--~~~~~~~~g~~~~~~~~~------ 128 (361)
T 3ftb_A 90 ---IIELSISLF-----EKILII-------------------------VPSYAE--YEINAKKHGVSVVFSYLD------ 128 (361)
T ss_dssp ---HHHHHHTTC-----SEEEEE-------------------------ESCCTH--HHHHHHHTTCEEEEEECC------
T ss_pred ---HHHHHHHHc-----CcEEEe-------------------------cCChHH--HHHHHHHcCCeEEEeecC------
Confidence 455543333 444443 333332 344556667543322210
Q ss_pred CCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccc
Q psy8733 209 PDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGV 288 (621)
Q Consensus 209 ~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv 288 (621)
+....+++++ +. .+++ +++|.+++..|.+|.
T Consensus 129 --------------------------~~~~~~~~~l---------------------~~-~l~~-~~~v~i~~p~nptG~ 159 (361)
T 3ftb_A 129 --------------------------ENMCIDYEDI---------------------IS-KIDD-VDSVIIGNPNNPNGG 159 (361)
T ss_dssp --------------------------TTSCCCHHHH---------------------HH-HTTT-CSEEEEETTBTTTTB
T ss_pred --------------------------cccCCCHHHH---------------------HH-hccC-CCEEEEeCCCCCCCC
Confidence 0000011111 11 2344 899999999999999
Q ss_pred cccc--------ccccCCCcEEEecccccCCCc-----ccc-cccc--eEEeccccccCCCc--cEEEE-EchhHHhhhC
Q psy8733 289 EFNY--------IPDSQGIPLVSDMSSNFLSRK-----FDV-SKFG--VIIAGAQKNIGPAG--ITVVI-VREDLLEYAL 349 (621)
Q Consensus 289 ~~p~--------i~~~~g~llvvDavSs~G~~p-----IDv-~~~g--vl~asaqK~lGP~G--lg~li-vr~~ll~~~~ 349 (621)
..|. +++++|+++|+|.+++.+... +.. ...+ +++.|.+|++|++| +|+++ .++++.+++.
T Consensus 160 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~ 239 (361)
T 3ftb_A 160 LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIK 239 (361)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHH
Confidence 9873 234789999999998855442 121 1223 67789999999776 58877 7778777653
Q ss_pred CCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 350 PITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 350 ~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.. ....++|....+++.++|+. .. .++.+.++.+++.+++++.|++++++.
T Consensus 240 ~~--------------~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~ 290 (361)
T 3ftb_A 240 AK--------------QNPWNINCFAEMAAINCLKD--TN-YIEESLLWIKKERKRFIEELNKIGFIK 290 (361)
T ss_dssp TT--------------SCTTCSCHHHHHHHHHTSSC--HH-HHHHHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred hh--------------CCCCCCCHHHHHHHHHHhcC--HH-HHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 21 11347788888888888874 23 588899999999999999999887553
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=137.41 Aligned_cols=133 Identities=12% Similarity=0.100 Sum_probs=100.3
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-c----c----cc-cccceEEeccccccCCCccE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-K----F----DV-SKFGVIIAGAQKNIGPAGIT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-p----I----Dv-~~~gvl~asaqK~lGP~Glg 336 (621)
+++++|.+++..+.+|...|+ +++++|+++|+|.+++.|.. | + ++ ++.++++.|..|.+|.+| |
T Consensus 177 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G-G 255 (401)
T 2bwn_A 177 AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-G 255 (401)
T ss_dssp TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-E
T ss_pred CCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC-C
Confidence 478999999999999999996 45678999999999995532 1 1 22 123578889999999888 9
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+++.++++.+.+......+ ....+||+ ..++++.++++++.+. |++.+.++.+++.+++++.|+++ |+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~---------~~~~~~~~-~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~ 323 (401)
T 2bwn_A 256 YIAASARMVDAVRSYAPGF---------IFSTSLPP-AIAAGAQASIAFLKTA-EGQKLRDAQQMHAKVLKMRLKAL-GM 323 (401)
T ss_dssp EEEECHHHHHHHHHHCHHH---------HTSBCCCH-HHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred EEecCHHHHHHHHHhCcCc---------eecCCCCH-HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 9999988876542110000 11234666 7788889999999776 78999999999999999999987 45
Q ss_pred c
Q psy8733 417 Y 417 (621)
Q Consensus 417 ~ 417 (621)
.
T Consensus 324 ~ 324 (401)
T 2bwn_A 324 P 324 (401)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-12 Score=133.55 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=100.0
Q ss_pred CCCCceEEEEecccccccccccc----ccccCCCcEEEecccccCCC---ccccccc----c--eEEeccccccCCCc--
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY----IPDSQGIPLVSDMSSNFLSR---KFDVSKF----G--VIIAGAQKNIGPAG-- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~----i~~~~g~llvvDavSs~G~~---pIDv~~~----g--vl~asaqK~lGP~G-- 334 (621)
+++++++|.+++..+.+|...|. +++++|+++|+|.+++.+.. +.++..+ + +++.|.+|++|++|
T Consensus 151 l~~~~~~v~~~~p~nptG~~~~~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 230 (370)
T 2z61_A 151 LSDKTKAIIINSPSNPLGEVIDREIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWR 230 (370)
T ss_dssp CCSSEEEEEEESSCTTTCCCCCHHHHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGC
T ss_pred cccCceEEEEcCCCCCcCcccCHHHHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccce
Confidence 34578999999999999999884 45678999999999997654 3444332 3 78999999999889
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|+++.++++.+++... . .....++|....+++.++|+.+.+. .++.+.++.+++.+++++.|+++
T Consensus 231 ~G~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~ 296 (370)
T 2z61_A 231 IGYVISNDEIIEAILKL-------Q-----QNLFISAPTISQYAALKAFEKETER-EINSMIKEFDRRRRLVLKYVKDF 296 (370)
T ss_dssp CEEEECCHHHHHHHHHH-------H-----HHHTSSSCHHHHHHHGGGGSHHHHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEECHHHHHHHHHH-------H-----hhcccCCCHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999988765321 0 0112466777788888888762233 57888899999999999999887
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-12 Score=134.13 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=92.2
Q ss_pred CCCCceEEEEeccccccccccc---c-----ccccCCCcEEEecccccCCC---cccccc----c--ceEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN---Y-----IPDSQGIPLVSDMSSNFLSR---KFDVSK----F--GVIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p---~-----i~~~~g~llvvDavSs~G~~---pIDv~~----~--gvl~asaqK~lGP 332 (621)
+++++++|.+++..|.+|...| + +++++|+++|+|.+++.+.. +.++.. . ++++.|.+|++|+
T Consensus 171 l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~ 250 (389)
T 1o4s_A 171 LVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSM 250 (389)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTC
T ss_pred cccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCC
Confidence 4567899999999999999877 2 34578999999999987654 223322 2 3889999999998
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+| +|+++.++++.+++.+.. ....+++++ ...+++. ..+ +. |++.+.++.+++.+++++.|
T Consensus 251 ~G~r~G~l~~~~~~~~~l~~~~-----------~~~~~~~~~-~~~~a~~---~~l-~~-~~~~~~~~~~~~~~~l~~~L 313 (389)
T 1o4s_A 251 TGWRVGYLISSEKVATAVSKIQ-----------SHTTSCINT-VAQYAAL---KAL-EV-DNSYMVQTFKERKNFVVERL 313 (389)
T ss_dssp GGGCCEEEECCHHHHHHHHHHH-----------HHHTCSCCH-HHHHHHH---HHT-TC-CCHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEeCHHHHHHHHHHh-----------hhcccCCCH-HHHHHHH---HHH-hc-cHHHHHHHHHHHHHHHHHHH
Confidence 89 899999999877653210 011233433 3333333 333 33 48888999999999999999
Q ss_pred HccCCcc
Q psy8733 411 DNSDKFY 417 (621)
Q Consensus 411 ~~~~g~~ 417 (621)
+++ |+.
T Consensus 314 ~~~-g~~ 319 (389)
T 1o4s_A 314 KKM-GVK 319 (389)
T ss_dssp HHT-TCC
T ss_pred Hhc-CCe
Confidence 887 443
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-12 Score=135.42 Aligned_cols=133 Identities=11% Similarity=0.114 Sum_probs=96.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC---ccccccc-----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR---KFDVSKF-----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~---pIDv~~~-----gvl~asaqK~lGP~ 333 (621)
+++++++|.+++..|.+|...+. +++++|+++|+|.+++.+.. +..+..+ ++++.|.+|++|++
T Consensus 171 l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 250 (406)
T 1xi9_A 171 ITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFAT 250 (406)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCG
T ss_pred hCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCC
Confidence 44578999999999999998762 34678999999999987542 3334333 46778899999988
Q ss_pred c--cEEEE--Ech----hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVI--VRE----DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405 (621)
Q Consensus 334 G--lg~li--vr~----~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~ 405 (621)
| +|+++ .++ ++.+++.. .. . .. .++|....+++.++|+.. .+ +++.+.++.+++.++
T Consensus 251 G~r~G~~~~~~~~~~~~~l~~~l~~-------~~---~--~~-~~~~~~~~~a~~~~l~~~-~~-~~~~~~~~~~~~~~~ 315 (406)
T 1xi9_A 251 GWRLGYMYFVDPENKLSEVREAIDR-------LA---R--IR-LCPNTPAQFAAIAGLTGP-MD-YLKEYMKKLKERRDY 315 (406)
T ss_dssp GGCCEEEEEECTTCTTHHHHHHHHH-------HH---H--HT-CCSCSHHHHHHHHHHHSC-CH-HHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEecCchhHHHHHHHHHH-------HH---H--hh-cCCCHHHHHHHHHHHhCC-cH-HHHHHHHHHHHHHHH
Confidence 9 89999 888 77765531 00 0 11 456666677777777533 22 378888899999999
Q ss_pred HHHHHHccCCcc
Q psy8733 406 LYQEIDNSDKFY 417 (621)
Q Consensus 406 L~e~L~~~~g~~ 417 (621)
+++.|++++|+.
T Consensus 316 l~~~L~~~~~~~ 327 (406)
T 1xi9_A 316 IYKRLNEIPGIS 327 (406)
T ss_dssp HHHHHHTSTTEE
T ss_pred HHHHHHhCCCCe
Confidence 999999876554
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=139.41 Aligned_cols=133 Identities=12% Similarity=0.061 Sum_probs=96.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----cccccc----c--ceEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----KFDVSK----F--GVIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----pIDv~~----~--gvl~asaqK~lG 331 (621)
+++++++|.+++..|.+|...|. +++++|+++|+|.+++.+.. +.++.. + ++++.|.+|++|
T Consensus 157 l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 236 (411)
T 2o0r_A 157 VTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN 236 (411)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT
T ss_pred hccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC
Confidence 45678999999999999998773 34678999999999987532 233322 3 388999999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
++| +|++++++++++.+... .. ....+++....+++.++|+.. +. .++.+.++.+++.+++++.
T Consensus 237 ~~G~r~G~~~~~~~~~~~l~~~-------~~-----~~~~~~~~~~~~a~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~~ 302 (411)
T 2o0r_A 237 CTGWKIGWACGPAELIAGVRAA-------KQ-----YLSYVGGAPFQPAVALALDTE-DA-WVAALRNSLRARRDRLAAG 302 (411)
T ss_dssp CTTTCEEEEECCHHHHHHHHHH-------HH-----HHTSCCCTTHHHHHHHHHHHC-HH-HHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeeCHHHHHHHHHH-------Hh-----hccCCCChHHHHHHHHHHhCC-hH-HHHHHHHHHHHHHHHHHHH
Confidence 999 99999999988765320 00 011233344556666777654 23 4788889999999999999
Q ss_pred HHccCCcc
Q psy8733 410 IDNSDKFY 417 (621)
Q Consensus 410 L~~~~g~~ 417 (621)
|++. |+.
T Consensus 303 L~~~-g~~ 309 (411)
T 2o0r_A 303 LTEI-GFA 309 (411)
T ss_dssp HHHH-TCE
T ss_pred HHHc-CCE
Confidence 9886 343
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=142.33 Aligned_cols=128 Identities=12% Similarity=0.090 Sum_probs=93.8
Q ss_pred CceEEEEecccccccccccc---ccccCCCcEEEecccccCC-----CcccccccceEEeccccccC-CCccEEEEEchh
Q psy8733 273 EASYLYYCDNETVDGVEFNY---IPDSQGIPLVSDMSSNFLS-----RKFDVSKFGVIIAGAQKNIG-PAGITVVIVRED 343 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---i~~~~g~llvvDavSs~G~-----~pIDv~~~gvl~asaqK~lG-P~Glg~livr~~ 343 (621)
++++|.++...+.++.-... +++++|+++|+|.+|+.|. .+-.++..|+++.|.||++| |.| |+++.+++
T Consensus 185 ~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~~g-G~i~~~~~ 263 (447)
T 3h7f_A 185 RPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRS-GLIVGKQQ 263 (447)
T ss_dssp CCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCCSC-EEEEECGG
T ss_pred CCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCCCe-EEEEECHH
Confidence 56788876666655552222 5568899999999986642 22223445799999999995 988 99999988
Q ss_pred HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 344 LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 344 ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+.+.+.+. ......++|+...+.++.+++..+.+. +++.+.++..++++++.+.|.+.
T Consensus 264 ~~~~l~~~-----------~~~~~~~~~~~~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~ 321 (447)
T 3h7f_A 264 YAKAINSA-----------VFPGQQGGPLMHVIAGKAVALKIAATP-EFADRQRRTLSGARIIADRLMAP 321 (447)
T ss_dssp GHHHHHHH-----------HTTTTCSSCCHHHHHHHHHHHHHTTSH-HHHHHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHhhh-----------cCCcccCCccHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 87654320 112345788888889999998877665 57888999999999999999876
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-12 Score=138.84 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=95.4
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEeccccc----CCCccccccc----c--eEEeccccccCCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF----LSRKFDVSKF----G--VIIAGAQKNIGPA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~----G~~pIDv~~~----g--vl~asaqK~lGP~ 333 (621)
+++++|.+++..|.||+..+. +++++|+++|+|.+++. +..+..+..+ + +++.|.+|++|++
T Consensus 208 ~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 287 (449)
T 3qgu_A 208 KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT 287 (449)
T ss_dssp CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT
T ss_pred CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc
Confidence 678999999999999999873 34578999999999987 3334444433 2 7789999999977
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++.++++++.. ..+..-.+.. .....+.+++.....++.++++..... .++.+.++.+++.+++++.|.
T Consensus 288 G~r~G~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~ 362 (449)
T 3qgu_A 288 GVRLGWTVVPKALKYAN--GEPVHADWNR--VMTTCFNGASNIVQAGGLACLQPEGLK-EMNAMIKFYKENAQILKTTFT 362 (449)
T ss_dssp TCCCEEEECCTTCBCTT--SCBHHHHHHH--HHHHSCCCCCHHHHHHHHHHTSHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEecCHHHHhhh--hhhHHHHHHH--HhhcccCCCCHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 7 89999988875420 0000000000 012334567777777777776642222 478888999999999999998
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
+++
T Consensus 363 ~~g 365 (449)
T 3qgu_A 363 EMG 365 (449)
T ss_dssp HTT
T ss_pred HCC
Confidence 873
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-11 Score=129.27 Aligned_cols=134 Identities=14% Similarity=0.133 Sum_probs=96.5
Q ss_pred CCCCceEEEEeccccccccccc---c-----ccccCCCcEEEecccccCCCc-c-c-ccccc--eEEeccccccCCCc--
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN---Y-----IPDSQGIPLVSDMSSNFLSRK-F-D-VSKFG--VIIAGAQKNIGPAG-- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p---~-----i~~~~g~llvvDavSs~G~~p-I-D-v~~~g--vl~asaqK~lGP~G-- 334 (621)
+++++++|.+++..+.+|...| + +++++|+++|+|.+++.+... + . .+.++ +.+.|.+|++|.+|
T Consensus 151 l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 230 (375)
T 3op7_A 151 IRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIR 230 (375)
T ss_dssp CCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGC
T ss_pred hccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccc
Confidence 4578999999999999999998 3 456899999999998765442 1 1 12233 77889999999777
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+|+++.++++.+++.... .....+++....+++..+++...+ .++.+.++.+++.+.+.+.|++.+
T Consensus 231 ~G~v~~~~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~ 296 (375)
T 3op7_A 231 IGWVAANHQVTDILRDYR------------DYTMICAGVFDDLVAQLALAHYQE--ILERNRHILEENLAILDQWIEEEP 296 (375)
T ss_dssp CEEEECCHHHHHHHTTTG------------GGTTSCCCHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred eEEEEeCHHHHHHHHHHH------------hhhccCCCcHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 499999999988764311 111234455555666667775443 367888888888999999998876
Q ss_pred Ccc
Q psy8733 415 KFY 417 (621)
Q Consensus 415 g~~ 417 (621)
++.
T Consensus 297 ~~~ 299 (375)
T 3op7_A 297 LVS 299 (375)
T ss_dssp TEE
T ss_pred Cce
Confidence 553
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-11 Score=130.96 Aligned_cols=133 Identities=12% Similarity=0.082 Sum_probs=97.8
Q ss_pred CCceEEEEeccccccccccc---c-----ccccCCCcEEEecccccCC----Cccccccc-----c--eEEeccccccCC
Q psy8733 272 PEASYLYYCDNETVDGVEFN---Y-----IPDSQGIPLVSDMSSNFLS----RKFDVSKF-----G--VIIAGAQKNIGP 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p---~-----i~~~~g~llvvDavSs~G~----~pIDv~~~-----g--vl~asaqK~lGP 332 (621)
+++++|.+++..|.||...| + +++++|+++|+|.+++.+. .+.++..+ + +++.|.+|++|+
T Consensus 163 ~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 242 (399)
T 1c7n_A 163 KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNI 242 (399)
T ss_dssp TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTC
T ss_pred CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccc
Confidence 57899999999999999988 2 3467999999999998742 33445332 3 778899999998
Q ss_pred Cc--cEEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 ~G--lg~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+| +|+++++ +++.+++... . ....+.|+|....+++.++|+... . .++.+.++.+++.+++.+.
T Consensus 243 ~G~r~G~~~~~~~~~~~~l~~~-------~----~~~~~~~~~~~~~~a~~~~l~~~~-~-~~~~~~~~~~~~~~~l~~~ 309 (399)
T 1c7n_A 243 AGMGMSNIIIKNPDIRERFTKS-------R----DATSGMPFTTLGYKACEICYKECG-K-WLDGCIKVIDKNQRIVKDF 309 (399)
T ss_dssp GGGCCEEEECCCHHHHHHHHHH-------H----HHTTCCCCCHHHHHHHHHHHHHCH-H-HHHHHHHHHHHHHHHHHHH
T ss_pred cchheEEEEECCHHHHHHHHHH-------H----hhcccCCCCHHHHHHHHHHHhCCh-H-HHHHHHHHHHHHHHHHHHH
Confidence 88 6999997 5677655320 0 011234677778888777877432 2 4788888999999999999
Q ss_pred HHc-cCCcc
Q psy8733 410 IDN-SDKFY 417 (621)
Q Consensus 410 L~~-~~g~~ 417 (621)
|++ ++|+.
T Consensus 310 L~~~~~~~~ 318 (399)
T 1c7n_A 310 FEVNHPEIK 318 (399)
T ss_dssp HHHHCTTSB
T ss_pred HHhhCCCCe
Confidence 988 66553
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.3e-12 Score=132.55 Aligned_cols=132 Identities=13% Similarity=0.181 Sum_probs=96.7
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC---ccc-cccc---ceEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR---KFD-VSKF---GVIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~---pID-v~~~---gvl~asaqK~lGP~G 334 (621)
+++++++|.+++..|.+|...+. +++++|+++|+|.+++.+.. ++. ++.+ ++++.|.+|++|++|
T Consensus 171 l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 250 (409)
T 2gb3_A 171 INERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACG 250 (409)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGG
T ss_pred hCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCcc
Confidence 45689999999999999998762 34679999999999987653 223 3332 378889999999889
Q ss_pred --cEEEEEch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 335 --ITVVIVRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 335 --lg~livr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+|+++.++ ++.+++... . .... +++....+++.++|+.. +. +++.+.++.+++.+++++.|+
T Consensus 251 ~r~G~~~~~~~~l~~~l~~~-------~----~~~~--~~~~~~~~a~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~~L~ 315 (409)
T 2gb3_A 251 ARVGCLITRNEELISHAMKL-------A----QGRL--APPLLEQIGSVGLLNLD-DS-FFDFVRETYRERVETVLKKLE 315 (409)
T ss_dssp GCCEEEECSCHHHHHHHHHH-------H----HHSC--CCCHHHHHHHHHHHTCC-HH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECcHHHHHHHHHH-------H----hccC--CCCHHHHHHHHHHHhcc-HH-HHHHHHHHHHHHHHHHHHHHH
Confidence 89999998 887765320 0 0111 56667777777777542 22 478888889999999999998
Q ss_pred ccCCcc
Q psy8733 412 NSDKFY 417 (621)
Q Consensus 412 ~~~g~~ 417 (621)
++ |+.
T Consensus 316 ~~-g~~ 320 (409)
T 2gb3_A 316 EH-GLK 320 (409)
T ss_dssp HT-TCC
T ss_pred Hc-Cce
Confidence 87 443
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-11 Score=128.26 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=92.2
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc---ccc-cccc--eEEeccccccCCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK---FDV-SKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p---IDv-~~~g--vl~asaqK~lGP~ 333 (621)
++++++|++++..+.||...|. +++++|+++|+|.+++.+. .+ +++ +.++ +++.|.+|++|++
T Consensus 156 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 235 (376)
T 2dou_A 156 WREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLA 235 (376)
T ss_dssp HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCG
T ss_pred ccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCCh
Confidence 3568999999888999999873 3457899999999998753 22 333 2234 7788999999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++.++++++++... . .....++|....+++.++|+... . .++.+.++.+++.+++.+.|+
T Consensus 236 G~r~G~~~~~~~~~~~l~~~-------~-----~~~~~~~~~~~~~a~~~~l~~~~-~-~~~~~~~~~~~~~~~l~~~L~ 301 (376)
T 2dou_A 236 GFRLGFALGSEEALARLERV-------K-----GVIDFNQYAGVLRMGVEALKTPK-E-VVRGYARVYRERALGMAEALK 301 (376)
T ss_dssp GGCCEEEEECHHHHHHHHHH-------H-----HHHCCCSCHHHHHHHHHHHTSCH-H-HHHHHHHHHHHHHHHHHHHHT
T ss_pred hheeEEEecCHHHHHHHHHH-------H-----HhcccCCCHHHHHHHHHHHhCcH-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 8 69999999988765320 0 01123456666677666765432 2 477888888889999999887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 302 ~~ 303 (376)
T 2dou_A 302 GV 303 (376)
T ss_dssp TT
T ss_pred Hh
Confidence 64
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=137.58 Aligned_cols=127 Identities=15% Similarity=0.109 Sum_probs=92.7
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-----cccccccceEEecccccc-CCCccEEEEEc
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-----KFDVSKFGVIIAGAQKNI-GPAGITVVIVR 341 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-----pIDv~~~gvl~asaqK~l-GP~Glg~livr 341 (621)
++++|.+++..+ |...|+ +++++|+++|+|.+++.|.. +.+++..|+++.|.||++ ||.| |+++.+
T Consensus 169 ~~~~v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-g~~~~~ 245 (420)
T 3gbx_A 169 KPKMIIGGFSAY--SGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRG-GLILAK 245 (420)
T ss_dssp CCSEEEECCTTC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSC-EEEEES
T ss_pred CCeEEEEecCcc--CCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCc-eEEEEc
Confidence 578888876444 556664 45689999999999876543 445555679999999999 6888 999998
Q ss_pred h---hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 342 E---DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 342 ~---~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+ ++.+.+... ......++|+...+.++..++..+.+. +++.+.++..++++++++.|.+.+
T Consensus 246 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g 309 (420)
T 3gbx_A 246 GGDEELYKKLNSA-----------VFPSAQGGPLMHVIAGKAVALKEAMEP-EFKVYQQQVAKNAKAMVEVFLNRG 309 (420)
T ss_dssp SCCHHHHHHHHHH-----------HC----CCCCHHHHHHHHHHHHHTTSH-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHhhhh-----------cCCCCCCCcchhHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 555544210 112335688888888888888776554 588899999999999999998853
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.5e-12 Score=131.14 Aligned_cols=127 Identities=11% Similarity=0.135 Sum_probs=91.8
Q ss_pred CceEEEEecccccccccccc-----c---cccCCCcEEEecccccCCCc---ccc-cccc--eEEeccccccCCCc--cE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----I---PDSQGIPLVSDMSSNFLSRK---FDV-SKFG--VIIAGAQKNIGPAG--IT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i---~~~~g~llvvDavSs~G~~p---IDv-~~~g--vl~asaqK~lGP~G--lg 336 (621)
++++|.+|+..|.||...|. + ++ +|+++|+|.+++.+... .++ +.++ +++.|.+|++|++| +|
T Consensus 146 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 224 (356)
T 1fg7_A 146 GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCG 224 (356)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCE
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhE
Confidence 78999999999999999884 2 34 89999999999855422 232 3344 77889999999888 69
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+++.++++++++.... . ..++|.....++.++|+..... .++.+.++.+++.+++++.|+++++
T Consensus 225 ~~~~~~~~~~~l~~~~-------------~-~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~ 288 (356)
T 1fg7_A 225 FTLANEEVINLLMKVI-------------A-PYPLSTPVADIAAQALSPQGIV-AMRERVAQIIAEREYLIAALKEIPC 288 (356)
T ss_dssp EEEECHHHHHHHHHHS-------------C-SSCSCHHHHHHHHHHTSHHHHH-HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred EEEeCHHHHHHHHHhc-------------C-CCCCCHHHHHHHHHHhcCccHH-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999887653210 1 1256666666655555432111 1678888888999999999988764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-11 Score=129.31 Aligned_cols=133 Identities=10% Similarity=0.123 Sum_probs=97.4
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEeccccc----CCCccccccc----c--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF----LSRKFDVSKF----G--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~----G~~pIDv~~~----g--vl~asaqK~lG 331 (621)
+++++++|.+++..|.+|...+. +++++|+++|+|.+++. +..+.++..+ + +++.|.+|.+|
T Consensus 171 ~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g 250 (422)
T 3fvs_A 171 FTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFS 250 (422)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHT
T ss_pred cCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccC
Confidence 45689999999999999999862 34678999999999986 3334444332 3 77888899999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH-----hhCCHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK-----RQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~-----~~gGl~~i~~r~~~la~ 404 (621)
++| +|+++.++++++.+.. . ......++|....+++.++++... ....++.+.++.+++.+
T Consensus 251 ~~G~r~G~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (422)
T 3fvs_A 251 ATGWKVGWVLGPDHIMKHLRT-----------V-HQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRD 318 (422)
T ss_dssp CGGGCCEEEECCHHHHHHHHH-----------H-HHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHH
T ss_pred CccceEEEEEeCHHHHHHHHH-----------H-HhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHH
Confidence 777 8999999998776521 0 012234566777778777776411 11147888999999999
Q ss_pred HHHHHHHccC
Q psy8733 405 LLYQEIDNSD 414 (621)
Q Consensus 405 ~L~e~L~~~~ 414 (621)
++++.|.+++
T Consensus 319 ~l~~~L~~~g 328 (422)
T 3fvs_A 319 HMIRSLQSVG 328 (422)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHcC
Confidence 9999999873
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-12 Score=134.45 Aligned_cols=133 Identities=11% Similarity=0.085 Sum_probs=95.7
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCccccccc----c--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKFDVSKF----G--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pIDv~~~----g--vl~asaqK~lG 331 (621)
+++++++|.+++..+.+|...+. +++++|+++|+|.+++.+ ..+.++..+ + +++.|.+|.+|
T Consensus 164 ~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g 243 (410)
T 3e2y_A 164 FSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFS 243 (410)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSS
T ss_pred cCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcC
Confidence 45689999999999999998652 346789999999999853 233334332 3 77888899999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH-----hhCCHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK-----RQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~-----~~gGl~~i~~r~~~la~ 404 (621)
++| +|+++.++++++.+.. . ......+++....+++.++|+... ....++.+.++.+++.+
T Consensus 244 ~~G~r~G~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (410)
T 3e2y_A 244 VTGWKLGWSIGPAHLIKHLQT-------V-----QQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRD 311 (410)
T ss_dssp CGGGCCEEEECCHHHHHHHHH-------H-----HHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEECHHHHHHHHH-------H-----HHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH
Confidence 777 7999999998876531 0 012234566677777777776310 11147888899999999
Q ss_pred HHHHHHHccC
Q psy8733 405 LLYQEIDNSD 414 (621)
Q Consensus 405 ~L~e~L~~~~ 414 (621)
++++.|++++
T Consensus 312 ~l~~~L~~~g 321 (410)
T 3e2y_A 312 RMVRLLNSVG 321 (410)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHCC
Confidence 9999998873
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-12 Score=133.81 Aligned_cols=132 Identities=14% Similarity=0.188 Sum_probs=83.8
Q ss_pred CCCCceEEEEecccccccccccc--------cccc------CCCcEEEecccccCC-----Ccccccccc--eEEecccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDS------QGIPLVSDMSSNFLS-----RKFDVSKFG--VIIAGAQK 328 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~------~g~llvvDavSs~G~-----~pIDv~~~g--vl~asaqK 328 (621)
+++++++|.+++..|.||...+. ++++ +|+++|+|.+++.+. .+...+.++ +++.|.+|
T Consensus 169 l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 248 (398)
T 3ele_A 169 INAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSK 248 (398)
T ss_dssp CCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTT
T ss_pred hCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhh
Confidence 45689999999999999999883 2345 899999999998632 333334444 88889999
Q ss_pred ccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8733 329 NIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 329 ~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L 406 (621)
++|++| +|++++++++.+... .... +.. ........+++.....++..+++ .. . ..++.+++.+++
T Consensus 249 ~~~~~G~r~G~~~~~~~~~~~~~-~~~~---~~~-~~~~~~~~~~~~~~~~a~~~~l~---~~-~---~~~~~~~~~~~l 316 (398)
T 3ele_A 249 SLSLPGERIGYVLVPDEVYDKAE-LYAA---VCG-AGRALGYVCAPSLFQKMIVKCQG---AT-G---DINAYKENRDLL 316 (398)
T ss_dssp TSSCTTTCCEEEECCTTSTTHHH-HHHH---HHH-HHHHTTCCCSCHHHHHHHTTCTT---CC-C---CHHHHHHHHHHH
T ss_pred cCCCccceeEEEEEcchhhhHHH-HHHH---HHH-HhhhccccCCCHHHHHHHHHHhc---CH-H---HHHHHHHHHHHH
Confidence 999777 899999988643210 0000 000 00111123444444444443332 22 2 356677778888
Q ss_pred HHHHHcc
Q psy8733 407 YQEIDNS 413 (621)
Q Consensus 407 ~e~L~~~ 413 (621)
++.|+++
T Consensus 317 ~~~L~~~ 323 (398)
T 3ele_A 317 YEGLTRI 323 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8888876
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-11 Score=127.70 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=88.9
Q ss_pred CCCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCCc--cccccc----ceEEeccccccC-C
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSRK--FDVSKF----GVIIAGAQKNIG-P 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~p--IDv~~~----gvl~asaqK~lG-P 332 (621)
+++++++|.+++..+.||...| + +++++|+++|+|.+++ ++..+ ++++.+ +++.+| |++| +
T Consensus 169 l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g 246 (375)
T 2eh6_A 169 LDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGG 246 (375)
T ss_dssp CCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTT
T ss_pred hcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCC
Confidence 4568999999999999999876 3 4567899999999999 76543 455544 367666 9996 6
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
.++|++++++++.+++.+. .....+++++... .++.++|+.+. .+.++.+++++++++.|++
T Consensus 247 ~~~G~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~l~~~~------~~~~~~~~~~~~l~~~L~~ 308 (375)
T 2eh6_A 247 VPIGAILAREEVAQSFTPG-----------SHGSTFGGNPLAC-RAGTVVVDEVE------KLLPHVREVGNYFKEKLKE 308 (375)
T ss_dssp SCCEEEEEEHHHHTTCCTT-----------SCCCSSTTCHHHH-HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcHHHHhhhcCC-----------CCCCCCCCCHHHH-HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 6899999999887655331 0123345554444 33345666543 5677788888999999987
Q ss_pred cC
Q psy8733 413 SD 414 (621)
Q Consensus 413 ~~ 414 (621)
++
T Consensus 309 ~~ 310 (375)
T 2eh6_A 309 LG 310 (375)
T ss_dssp TT
T ss_pred Hh
Confidence 65
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-13 Score=143.47 Aligned_cols=104 Identities=34% Similarity=0.663 Sum_probs=95.8
Q ss_pred hHHHHHhhcccccccCCcEEeeecHhHhhhcCC-CCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALP-ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 448 ~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~-~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
++|++++|+||++||.|++++++|++++++..+ ..|.+++|.....++++++|||++.||.++..|+|+++.||++.++
T Consensus 184 ~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~ 263 (361)
T 3m5u_A 184 NIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVH 263 (361)
T ss_dssp TEEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cCCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHH
Confidence 368999999999999999999999999988776 7899999888777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCcccccC
Q psy8733 527 QNSLQKSVLLYQEIDNSDKFYECPV 551 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~~~~~~~v 551 (621)
++.++.++.+|+.+++.+++|.+++
T Consensus 264 ~~~~~l~~~l~~~L~~~~g~~~~~~ 288 (361)
T 3m5u_A 264 EKNSQKATMLYECIDLSNGFYKGHA 288 (361)
T ss_dssp HHHHHHHHHHHHHHHTSTTSEEESS
T ss_pred HHHHHHHHHHHHHHHHCCCeeeccC
Confidence 9999999999999999887766654
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-11 Score=128.65 Aligned_cols=132 Identities=13% Similarity=0.084 Sum_probs=96.6
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC------Ccc-ccc-ccc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS------RKF-DVS-KFG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~------~pI-Dv~-~~g--vl~asaqK~lG 331 (621)
+++++++|.+++..+.+|...+. +++++|+++|+|.+++.+. .++ .+. .++ +++.|.+|++|
T Consensus 179 l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~ 258 (429)
T 1yiz_A 179 FNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFS 258 (429)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHT
T ss_pred hccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccC
Confidence 45689999999999999999862 3467899999999998532 233 232 344 88999999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW-----IKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~-----i~~~gGl~~i~~r~~~la~ 404 (621)
++| +|++++++++++.+... ......+++.....++.++|+. ......++++.++.+++.+
T Consensus 259 ~~G~r~G~~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (429)
T 1yiz_A 259 LTGWKIGWAYGPEALLKNLQMV------------HQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRD 326 (429)
T ss_dssp CGGGCCEEEESCHHHHHHHHHH------------HHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEeCHHHHHHHHHH------------HhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHH
Confidence 999 99999999988765320 0112235566667777777776 2112247888999999999
Q ss_pred HHHHHHHcc
Q psy8733 405 LLYQEIDNS 413 (621)
Q Consensus 405 ~L~e~L~~~ 413 (621)
++++.|+++
T Consensus 327 ~l~~~L~~~ 335 (429)
T 1yiz_A 327 YMASFLAEV 335 (429)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999886
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-11 Score=126.01 Aligned_cols=126 Identities=10% Similarity=0.042 Sum_probs=91.9
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC---ccccc---------ccc--eEEecccc
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR---KFDVS---------KFG--VIIAGAQK 328 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~---pIDv~---------~~g--vl~asaqK 328 (621)
.+++++|++++..|.+|+..+. +++++|+++|+|.+++.+.. +..+- .++ +++.|.+|
T Consensus 152 ~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 231 (376)
T 3ezs_A 152 LQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSK 231 (376)
T ss_dssp HHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTT
T ss_pred ccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchh
Confidence 3468899999999999999883 24578999999999986443 33321 344 78889999
Q ss_pred ccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8733 329 NIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 329 ~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L 406 (621)
++|++| +|+++.++++.+.+.. . ......++|.....++.++++. .. .++++.++.+++.+++
T Consensus 232 ~~g~~G~r~G~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~a~~~~l~~--~~-~~~~~~~~~~~~~~~l 296 (376)
T 3ezs_A 232 RSSAPGLRSGFIAGDSRLLEKYKA-----------F-RAYLGYTSANAIQKASEAAWLD--DR-HAEFFRNIYANNLKLA 296 (376)
T ss_dssp TTTCGGGCCEEEEECHHHHHHHHH-----------H-HTTTCCCCCHHHHHHHHHHHHC--SH-HHHHHHHHHHHHHHHH
T ss_pred ccCCccceeEEEeeCHHHHHHHHH-----------H-HhhhcCCCChHHHHHHHHHHhC--cH-HHHHHHHHHHHHHHHH
Confidence 998777 7999999988776531 0 1122346777788887777774 22 3778888888888888
Q ss_pred HHHHH
Q psy8733 407 YQEID 411 (621)
Q Consensus 407 ~e~L~ 411 (621)
++.|+
T Consensus 297 ~~~l~ 301 (376)
T 3ezs_A 297 RKIFK 301 (376)
T ss_dssp HHHST
T ss_pred HHHhc
Confidence 88776
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5e-12 Score=133.74 Aligned_cols=127 Identities=13% Similarity=0.191 Sum_probs=87.1
Q ss_pred CceEEE-Eecccccccccccc--------ccccCCCcEEEecccccCC----Cccccccc------c--eEEeccccccC
Q psy8733 273 EASYLY-YCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVSKF------G--VIIAGAQKNIG 331 (621)
Q Consensus 273 ~t~~V~-~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~~~------g--vl~asaqK~lG 331 (621)
++++|+ +++..|.||...|. +++++|+++|+|.+++.+. .+.++..+ + +++.|.+|++|
T Consensus 162 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 241 (397)
T 2zyj_A 162 RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS 241 (397)
T ss_dssp CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC
T ss_pred CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc
Confidence 678874 68888999998873 3457899999999998753 23444433 3 77899999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+| +|+++.++++++++.... ....+++ |....+++.++|+..... .++++.++.+++.+++++.
T Consensus 242 -~G~r~G~~~~~~~~~~~l~~~~-----------~~~~~~~-~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~ 307 (397)
T 2zyj_A 242 -PGLRVAFAVAHPEALQKLVQAK-----------QGADLHT-PMLNQMLVHELLKEGFSE-RLERVRRVYREKAQAMLHA 307 (397)
T ss_dssp -GGGCCEEEECCHHHHHHHHHHH-----------HHHHSSC-CHHHHHHHHHHHTTTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred -ccceeEEEecCHHHHHHHHHHH-----------HhhcCCC-CHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 66 699999999887653210 0112334 444555555555422101 3677888888888999999
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
|++.
T Consensus 308 L~~~ 311 (397)
T 2zyj_A 308 LDRE 311 (397)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9873
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=141.34 Aligned_cols=128 Identities=9% Similarity=0.049 Sum_probs=94.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-----cccccccc--eEEecccccc-CCCccE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-----KFDVSKFG--VIIAGAQKNI-GPAGIT 336 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-----pIDv~~~g--vl~asaqK~l-GP~Glg 336 (621)
+++++++|.+++ .|.+|...|+ +++++|+++++|.+++. +. |++...++ +++.|.||++ |+.|+|
T Consensus 143 ~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~~g~g 220 (446)
T 2x3l_A 143 NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGS 220 (446)
T ss_dssp ----CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGGTCSEEEECHHHHSSSCTTCE
T ss_pred cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHcCCCEEEECCccccccccccE
Confidence 567899999999 7779999986 45689999999999986 22 56665554 9999999987 589999
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
++++++++++ ..+ + .... .....+||+...++++..+++++.+. |.+++.++.+++++++++.
T Consensus 221 ~l~~~~~~i~-~~~----~---~~~~-~~~~~~s~~~~~~aal~~a~~~l~~~-g~~~~~~~~~~l~~~l~~~ 283 (446)
T 2x3l_A 221 VLYIHKNAPY-REN----I---IEYL-SYFQTSSPSYLIMASLESAAQFYKTY-DSTLFFAKRAQLIECLENK 283 (446)
T ss_dssp EEEEETTCTT-HHH----H---HHHH-HHHSCSSCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcCC-HHH----H---HHHH-HHHcCCCchHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHc
Confidence 9999988653 111 0 0000 01123678888899999999999887 7777888888888888876
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=127.97 Aligned_cols=127 Identities=9% Similarity=0.091 Sum_probs=94.5
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccC-C-Cccc-ccccc--eEEeccccccCCCc--cEEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL-S-RKFD-VSKFG--VIIAGAQKNIGPAG--ITVVI 339 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G-~-~pID-v~~~g--vl~asaqK~lGP~G--lg~li 339 (621)
+++++|++++..|.||...|. +.+..| ++|+|.+++.+ . ..++ ++.++ +++.|.+|++|++| +|+++
T Consensus 137 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 215 (335)
T 1uu1_A 137 GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVV 215 (335)
T ss_dssp CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEE
T ss_pred CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEE
Confidence 578999999999999999885 334448 89999999832 2 1234 24444 78899999999888 69999
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
.++++.+++.+.. ...++|....+++.++|+.. . .++.+.++.+++.+++.+.|+++ |+.
T Consensus 216 ~~~~~~~~l~~~~--------------~~~~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~~~~~~l~~~L~~~-g~~ 275 (335)
T 1uu1_A 216 ASEKFIDAYNRVR--------------LPFNVSYVSQMFAKVALDHR--E-IFEERTKFIVEERERMKSALREM-GYR 275 (335)
T ss_dssp ECHHHHHHHHHHS--------------CTTCSCHHHHHHHHHHHHTH--H-HHHHHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred eCHHHHHHHHHhc--------------CCCCcCHHHHHHHHHHhCCH--H-HHHHHHHHHHHHHHHHHHHHHHC-CcE
Confidence 9999887653210 11377777888877777652 2 47888888999999999999887 453
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.6e-11 Score=124.05 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=93.7
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccccc--------ccc--eEEeccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVS--------KFG--VIIAGAQ 327 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~--------~~g--vl~asaq 327 (621)
+.+++++|++++..|.||...+. +++++|+++|+|.+++.+. .++..- +.+ +++.|.+
T Consensus 165 ~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 244 (396)
T 3jtx_A 165 VWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLS 244 (396)
T ss_dssp HHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEEST
T ss_pred hccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccc
Confidence 34579999999999999999874 3457899999999998643 333321 234 7888999
Q ss_pred cccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q psy8733 328 KNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405 (621)
Q Consensus 328 K~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~ 405 (621)
|.+|.+| +|+++.++++.+.+.. .. .....++|....+++.++++. +. .++.+.++.+++.+.
T Consensus 245 K~~~~~G~r~G~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~a~~~~l~~--~~-~~~~~~~~~~~~~~~ 309 (396)
T 3jtx_A 245 KRSNVPGLRSGFVAGDAELLKNFLL-------YR-----TYHGSAMSIPVQRASIAAWDD--EQ-HVIDNRRLYQEKFER 309 (396)
T ss_dssp TTSSCGGGCCEEEEECHHHHHHHHH-------HH-----HHHTCCCCHHHHHHHHHHHHC--CH-HHHHHHHHHHHHHHH
T ss_pred cccCCcccceEEEEeCHHHHHHHHH-------HH-----hhcccCCCHHHHHHHHHHhCC--HH-HHHHHHHHHHHHHHH
Confidence 9988776 7999999888776532 00 112346777788888777764 22 477888888888888
Q ss_pred HHHHHHcc
Q psy8733 406 LYQEIDNS 413 (621)
Q Consensus 406 L~e~L~~~ 413 (621)
+++.|++.
T Consensus 310 l~~~l~~~ 317 (396)
T 3jtx_A 310 VIPILQQV 317 (396)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 98888764
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-11 Score=140.25 Aligned_cols=140 Identities=11% Similarity=0.003 Sum_probs=99.6
Q ss_pred eEEEEecccccccccccc-----ccccCCCcEEEecccccC---------CCcccccc--cc----eEEeccccccC-CC
Q psy8733 275 SYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFL---------SRKFDVSK--FG----VIIAGAQKNIG-PA 333 (621)
Q Consensus 275 ~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G---------~~pIDv~~--~g----vl~asaqK~lG-P~ 333 (621)
++|.+|+ .|.+|...|+ +++++|+++++|.+++.+ ..++++++ .+ +++.|.||++| |.
T Consensus 283 klviv~~-pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~ 361 (730)
T 1c4k_A 283 RLAVIQL-GTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS 361 (730)
T ss_dssp SEEEEES-BCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT
T ss_pred eEEEEEC-CCCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCC
Confidence 7888886 5789999986 457889999999998632 12355532 23 89999999995 88
Q ss_pred ccEEEEEchhHHhhhCCCCCceeecccccc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
|.|+++++++.+.. .+.+++...... ......||+...+.++.+|++++...+| +...++..++++++++.|.
T Consensus 362 ~gg~I~v~~~~l~g----~~~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g-~~~~~~~~~~a~~lr~~L~ 436 (730)
T 1c4k_A 362 QTSQIHKKDSHIKG----QLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAG-RKLWHDLLITTIEARKKLI 436 (730)
T ss_dssp TCEEEEEECGGGTT----STTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchhhcC----cccccCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHh
Confidence 89999999886521 011222111000 0112368999999999999999987424 5566788999999999999
Q ss_pred c-cCCcccCc
Q psy8733 412 N-SDKFYECP 420 (621)
Q Consensus 412 ~-~~g~~~~~ 420 (621)
+ ++|+.+..
T Consensus 437 ~~i~g~~v~~ 446 (730)
T 1c4k_A 437 KAGSMFRPFV 446 (730)
T ss_dssp HTTCSSEESS
T ss_pred hhCCCeEEcc
Confidence 8 77787653
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9e-11 Score=125.65 Aligned_cols=139 Identities=10% Similarity=0.106 Sum_probs=92.3
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEeccccc---CCCccccccc----c--eEEeccccccCCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF---LSRKFDVSKF----G--VIIAGAQKNIGPA 333 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~---G~~pIDv~~~----g--vl~asaqK~lGP~ 333 (621)
.+++++|.+|+..|.||..++. +++++|+++|+|.+++. +..+..+..+ + +++.|..|.+|++
T Consensus 196 ~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 275 (432)
T 3ei9_A 196 VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFT 275 (432)
T ss_dssp CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTT
T ss_pred CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCc
Confidence 4678999999999999998873 35678999999999983 3333333222 3 7788999999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++++++++..- ..+..-.+... ....+++++.++..++.++++..... .++.+.++.+++.+++++.|+
T Consensus 276 G~r~G~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~ 350 (432)
T 3ei9_A 276 GVRLGWTVIPKKLLYSD--GFPVAKDFNRI--ICTCFNGASNISQAGALACLTPEGLE-AMHKVIGFYKENTNIIIDTFT 350 (432)
T ss_dssp TTCCEEEECCTTCBCTT--SCBHHHHHHHH--HHHSCCCSCHHHHHHHHHHSSHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEChHHhhcc--hHHHHHHHHHH--hccccCCCCHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8 79999988872100 00000000000 11234566777777766666421112 367888889999999999998
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
+++
T Consensus 351 ~~g 353 (432)
T 3ei9_A 351 SLG 353 (432)
T ss_dssp HTT
T ss_pred HCC
Confidence 873
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=130.59 Aligned_cols=244 Identities=11% Similarity=0.009 Sum_probs=137.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHH-HHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhc
Q psy8733 61 KLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAAL-RELLNVPNNYKILFLQGGGTGMFAAVAMNLISSS 139 (621)
Q Consensus 61 ~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~L-a~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~ 139 (621)
+.|+++++++.+.+.+-. .+..+ ...++.|+.+ ++++|.+. +++++ +|||. |++++...
T Consensus 13 ~~~~~i~~a~~~~~~~~~--------~~~~~----~~~~~l~~~~~a~~~g~~~--~~v~~-~sgt~-----al~~al~~ 72 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHI--------YTNYG----PINQRFEQTIMSGFFQNRG--AVTTV-ANATL-----GLMAAIQL 72 (377)
T ss_dssp CCGGGGHHHHHHHHHHTC--------CSSSC----HHHHHHHHHHHHHTSTTCS--EEEEE-SCHHH-----HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCC--------cccCC----HHHHHHHHHHHHHHhCCCC--eEEEe-CCHHH-----HHHHHHHH
Confidence 456778888888764311 11112 2467889999 99999432 57776 67888 56665555
Q ss_pred cCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCC
Q psy8733 140 MNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPE 219 (621)
Q Consensus 140 ~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (621)
+++++||+|++..- ++.+ ....++..|...+..+.. +
T Consensus 73 l~~~~Gd~Vi~~~~-------------------------~~~~--~~~~~~~~G~~~~~v~~~----------~------ 109 (377)
T 3ju7_A 73 KKRKKGKYALMPSF-------------------------TFPA--TPLAAIWCGLEPYFIDIS----------I------ 109 (377)
T ss_dssp HSCTTCCEEEEESS-------------------------SCTH--HHHHHHHTTCEEEEECBC----------T------
T ss_pred cCCCCcCEEEECCC-------------------------CcHH--HHHHHHHcCCEEEEEecC----------C------
Confidence 56777777777653 1111 122345567543332210 0
Q ss_pred ccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCC-CCC--ceEEEEecccccccccccc----
Q psy8733 220 ASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNR-DPE--ASYLYYCDNETVDGVEFNY---- 292 (621)
Q Consensus 220 v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i-~~~--t~~V~~thnET~tGv~~p~---- 292 (621)
..|. ++++++ +. .+ +++ +++|..+| .+|...|+
T Consensus 110 -------------~~~~--~d~~~l---------------------~~-~i~~~~~~tk~v~~~~---~~G~~~~~~~i~ 149 (377)
T 3ju7_A 110 -------------DDWY--MDKTVL---------------------WD-KIEELKEEVAIVVPYA---TFGSWMNLEEYE 149 (377)
T ss_dssp -------------TTCS--BCHHHH---------------------HH-HHHHHGGGEEEECCBC---GGGBCCCCHHHH
T ss_pred -------------ccCC--cCHHHH---------------------HH-HHhcCCCCceEEEEEC---CCCCccCHHHHH
Confidence 0010 122221 00 12 334 88887544 57998885
Q ss_pred -ccccCCCcEEEecccccCCCcc--cc----cccceEEeccccccCCCccEEEEEc-hhHHhhhCCCCC-ce-eeccccc
Q psy8733 293 -IPDSQGIPLVSDMSSNFLSRKF--DV----SKFGVIIAGAQKNIGPAGITVVIVR-EDLLEYALPITP-TV-FHFKINA 362 (621)
Q Consensus 293 -i~~~~g~llvvDavSs~G~~pI--Dv----~~~gvl~asaqK~lGP~Glg~livr-~~ll~~~~~~~P-~~-ld~~~~~ 362 (621)
+++ +|+++|+|++|++|...- .+ .++++..++++|++|+..-|+++.+ +++.+++..... .. ..+. ..
T Consensus 150 ~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~-~~ 227 (377)
T 3ju7_A 150 ELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRE-CT 227 (377)
T ss_dssp HHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSC-BC
T ss_pred HHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCc-ee
Confidence 568 999999999999997421 12 1223566678999986334455554 445554432111 00 0010 11
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
..+..+.+.++....++. .+ . .++.+.++.+++++++.+.|++++++
T Consensus 228 ~~g~~~~~~~~~aa~~~~----~l--~-~l~~~~~~~~~~~~~~~~~L~~~~~~ 274 (377)
T 3ju7_A 228 MMGFNCKMSEYAAAIGIA----TM--K-KWDDKLKERTRISEWYKQLLQSNGLM 274 (377)
T ss_dssp SSCCBCCCCHHHHHHHHH----HH--H-THHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred eccccCCCCHHHHHHHHH----HH--H-HHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 123334555555444322 22 2 47788888899999999999988754
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-11 Score=127.72 Aligned_cols=131 Identities=9% Similarity=0.113 Sum_probs=97.0
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Ccccccc----c-ceEEeccccccCCCc-
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVSK----F-GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~~----~-gvl~asaqK~lGP~G- 334 (621)
++++|.+++..|.||...|. +++++|+++|+|.+++.+. .+.++.. + +. +.|.+|++|++|
T Consensus 162 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~ 240 (390)
T 1d2f_A 162 ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPAL 240 (390)
T ss_dssp TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGG
T ss_pred CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccCh
Confidence 78999999999999999873 3457899999999998743 3334332 2 46 899999999888
Q ss_pred -cEEEEEc-hhHHhhhCCCCCceeeccccccC-CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 335 -ITVVIVR-EDLLEYALPITPTVFHFKINADN-NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 335 -lg~livr-~~ll~~~~~~~P~~ld~~~~~~~-~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+|+++++ +++.+++... .. ...+.|+|....+++.++++...+ .++.+.++.+++.+++++.|+
T Consensus 241 r~G~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~L~ 307 (390)
T 1d2f_A 241 TGAYGIIENSSSRDAYLSA-----------LKGRDGLSSPSVLALTAHIAAYQQGAP--WLDALRIYLKDNLTYIADKMN 307 (390)
T ss_dssp CCEEEEECSHHHHHHHHHH-----------HHTTSCCCSCCHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hheEEEECCHHHHHHHHHH-----------HhhhcccCCCCHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 5999986 6776654210 01 233457888888888888875332 478888899999999999998
Q ss_pred c-cCCcc
Q psy8733 412 N-SDKFY 417 (621)
Q Consensus 412 ~-~~g~~ 417 (621)
+ ++|+.
T Consensus 308 ~~~~~~~ 314 (390)
T 1d2f_A 308 AAFPELN 314 (390)
T ss_dssp HHCSSCC
T ss_pred hhCCCCE
Confidence 8 66553
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-11 Score=129.17 Aligned_cols=132 Identities=7% Similarity=0.017 Sum_probs=97.3
Q ss_pred CCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cccccccc----c--eEEeccccccCCC
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RKFDVSKF----G--VIIAGAQKNIGPA 333 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~pIDv~~~----g--vl~asaqK~lGP~ 333 (621)
++++++|++++..+.||...|. +++++|+++|+|.+++.+. .+.++..+ + +++.|.+|++|++
T Consensus 179 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 258 (404)
T 2o1b_A 179 IDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMS 258 (404)
T ss_dssp HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCG
T ss_pred ccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCc
Confidence 3578999999888999999862 3468899999999998753 34444332 3 7889999999977
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++.++++++++... . .....++|....+++.++|+.. +. .++.+.++.+++.+++++.|+
T Consensus 259 G~r~G~~~~~~~~~~~l~~~-------~-----~~~~~~~~~~~~~a~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~~L~ 324 (404)
T 2o1b_A 259 GFRVGFAVGNKDMIQALKKY-------Q-----THTNAGMFGALQDAAIYALNHY-DD-FLEEQSNVFKTRRDRFEAMLA 324 (404)
T ss_dssp GGCCEEEEECHHHHHHHHHH-------H-----HHHCCCCCHHHHHHHHHHHHHC-HH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheEeEecCHHHHHHHHHH-------H-----hhccCCCCHHHHHHHHHHHhcC-HH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8 69999999988765320 0 1122456677777777777654 22 478888899999999999999
Q ss_pred ccCCcc
Q psy8733 412 NSDKFY 417 (621)
Q Consensus 412 ~~~g~~ 417 (621)
++ |+.
T Consensus 325 ~~-g~~ 329 (404)
T 2o1b_A 325 KA-DLP 329 (404)
T ss_dssp HT-TCC
T ss_pred hc-CCe
Confidence 87 453
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-11 Score=126.47 Aligned_cols=127 Identities=12% Similarity=0.158 Sum_probs=90.8
Q ss_pred CCCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--C--ccccccc--ceEEeccccccC-C
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--R--KFDVSKF--GVIIAGAQKNIG-P 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~--pIDv~~~--gvl~asaqK~lG-P 332 (621)
+++++++|.++++.+.||...| + +++++|+++|+|.+++ ++. . +++.... |++ +.+|++| +
T Consensus 182 i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g 259 (395)
T 1vef_A 182 VDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGG 259 (395)
T ss_dssp CCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTT
T ss_pred hccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCC
Confidence 4467899999888888998876 3 4567899999999998 532 2 2233222 355 5599996 5
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
.++|++++++++++++.+. ......+++....+++.++++.+.+. .+.++.+++++++++.|++
T Consensus 260 ~~~G~~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~a~~~al~~~~~~----~~~~~~~~~~~~l~~~l~~ 323 (395)
T 1vef_A 260 VPLGVAVMREEVARSMPKG------------GHGTTFGGNPLAMAAGVAAIRYLERT----RLWERAAELGPWFMEKLRA 323 (395)
T ss_dssp SSCEEEEEEHHHHHTSCTT------------SSCCSSTTCHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEehHHHHhhhccC------------CcCCCcCCCHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHH
Confidence 6799999999987755320 01122356777888888899988653 4567788888999999987
Q ss_pred cC
Q psy8733 413 SD 414 (621)
Q Consensus 413 ~~ 414 (621)
++
T Consensus 324 ~~ 325 (395)
T 1vef_A 324 IP 325 (395)
T ss_dssp SC
T ss_pred hh
Confidence 64
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=143.38 Aligned_cols=132 Identities=15% Similarity=0.126 Sum_probs=95.0
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCC---------Ccc-----cccccc-eEEeccccccC-
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS---------RKF-----DVSKFG-VIIAGAQKNIG- 331 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~---------~pI-----Dv~~~g-vl~asaqK~lG- 331 (621)
++++|.+|+ +|.+|...|+ +++++++++++|++++.+. .++ |+.+-. +++.|+||+++
T Consensus 312 ~~klvil~~-pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g 390 (755)
T 2vyc_A 312 KPSYCVVTN-CTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA 390 (755)
T ss_dssp CCSCEEEES-SCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSC
T ss_pred CCeEEEEEC-CCCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccC
Confidence 345888887 5899999986 4578999999999986421 111 111111 49999999995
Q ss_pred CCccEEEEEchh--HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVRED--LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~Glg~livr~~--ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
|.|.|+++++++ .++.. .+.... ......||+...++++.+|++++.++ |.+.+.++..++++++++.
T Consensus 391 ~~~g~~i~~~~~~~~i~~~--------~~~~~~-~~~~s~sp~~~~iaal~aA~~~l~~~-gg~~~~~~~~~~a~~~r~~ 460 (755)
T 2vyc_A 391 LSQASYIHVREGRGAINFS--------RFNQAY-MMHATTSPLYAICASNDVAVSMMDGN-SGLSLTQEVIDEAVDFRQA 460 (755)
T ss_dssp CTTCEEEEEECCBTCCCHH--------HHHHHH-HHTSCSSCCHHHHHHHHHHHHHHSTH-HHHHHHHHHHHHHHHHHHH
T ss_pred cCCeeeeeecCcccccCHH--------HHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHH
Confidence 888999999876 11100 000000 01223689999999999999999887 4577889999999999999
Q ss_pred HHccCC
Q psy8733 410 IDNSDK 415 (621)
Q Consensus 410 L~~~~g 415 (621)
|.+++|
T Consensus 461 L~~l~~ 466 (755)
T 2vyc_A 461 MARLYK 466 (755)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 999876
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=129.43 Aligned_cols=133 Identities=16% Similarity=0.150 Sum_probs=90.5
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC-------ccc-cccc--c-eEEeccccccCCC
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR-------KFD-VSKF--G-VIIAGAQKNIGPA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~-------pID-v~~~--g-vl~asaqK~lGP~ 333 (621)
+++++.+++..|.||...+. +++++|+++|+|.+++.+.. ++. +... + +++.|.+|++|++
T Consensus 169 ~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 248 (394)
T 2ay1_A 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY 248 (394)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCc
Confidence 46778889999999998873 34578999999999986554 233 3332 2 6677889999999
Q ss_pred cc--EEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH-----hhCCHHHHHHHHHHHH
Q psy8733 334 GI--TVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK-----RQGGLAKMEQNSLQKS 403 (621)
Q Consensus 334 Gl--g~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~-----~~gGl~~i~~r~~~la 403 (621)
|+ |++++ ++++++++... +.. .....+.++|....+++.++|+... +. .++.+.++.+++.
T Consensus 249 G~riG~~~~~~~~~~~~~~l~~~------~~~--~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~ 319 (394)
T 2ay1_A 249 RERTGCLLALCADAATRELAQGA------MAF--LNRQTYSFPPFHGAKIVSTVLTTPELRADWMA-ELEAVRSGMLRLR 319 (394)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHH------HHH--HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred CCccceEEEEeCCHHHHHHHHHH------HHH--HHhhhcCCCChHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHHHHH
Confidence 95 99998 67665443110 000 0112344556667777777776431 22 4788888999999
Q ss_pred HHHHHHHHccC
Q psy8733 404 VLLYQEIDNSD 414 (621)
Q Consensus 404 ~~L~e~L~~~~ 414 (621)
+++++.|++++
T Consensus 320 ~~l~~~L~~~~ 330 (394)
T 2ay1_A 320 EQLAGELRDLS 330 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999988763
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-10 Score=122.96 Aligned_cols=138 Identities=9% Similarity=0.065 Sum_probs=84.1
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc---cccc-ceEEeccc--cccCCCccEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD---VSKF-GVIIAGAQ--KNIGPAGITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID---v~~~-gvl~asaq--K~lGP~Glg~l 338 (621)
+++++++|+++| .+|...++ +++++|+++|+|.++++|.. .+ +..+ |+++.|.+ |++++...|++
T Consensus 135 i~~~~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~~~~~G~~ 210 (424)
T 2po3_A 135 VTPRTSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVNAFEGGAV 210 (424)
T ss_dssp CCTTEEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCEEE
T ss_pred hCcCCcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCe-ECCeecccccCEEEEeCCCCCCccCCCCeEE
Confidence 456789999876 68988775 45689999999999998664 22 2222 36767765 99987667888
Q ss_pred EEc-hhHHhhhCCCCC-ce-eeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 339 IVR-EDLLEYALPITP-TV-FHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 339 ivr-~~ll~~~~~~~P-~~-ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+.+ +++++++.+... .. ..+.. ...+..+..++.....++ ..+ . +++.+.++.+++++++++.|.+++|
T Consensus 211 v~~~~~l~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~aa~~l----~~~--~-~~~~~~~~~~~~~~~l~~~L~~~~g 282 (424)
T 2po3_A 211 VTDDADLAARIRALHNFGFDLPGGS-PAGGTNAKMSEAAAAMGL----TSL--D-AFPEVIDRNRRNHAAYREHLADLPG 282 (424)
T ss_dssp EESCHHHHHHHHHHHBTTTTCTTCC-TTCCCBCCCCHHHHHHHH----HHH--H-HHHHHHHHHHHHHHHHHHHTCSCTT
T ss_pred EeCCHHHHHHHHHHHhcCccccccc-cccCcCCCcCHHHHHHHH----HHH--H-HHHHHHHHHHHHHHHHHHHhccCCC
Confidence 888 677766543110 00 00000 000011112233333322 222 2 4677888888899999999988766
Q ss_pred cccC
Q psy8733 416 FYEC 419 (621)
Q Consensus 416 ~~~~ 419 (621)
+...
T Consensus 283 ~~~~ 286 (424)
T 2po3_A 283 VLVA 286 (424)
T ss_dssp EEEC
T ss_pred cccc
Confidence 6443
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-11 Score=127.15 Aligned_cols=129 Identities=10% Similarity=0.092 Sum_probs=89.7
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccC-CCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIG-PAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lG-P~G--lg~liv 340 (621)
+++++++|.+++..+.+|...|+ +++++|+++|+|.+++.+....++. ..++++.|.||++| |.+ .|+++.
T Consensus 147 i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~ 226 (398)
T 1gc0_A 147 MTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVG 226 (398)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEE
T ss_pred cCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEE
Confidence 45689999999999999999986 4578999999999999876444442 23489999999997 554 599999
Q ss_pred chhHHh-hhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 341 REDLLE-YALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 341 r~~ll~-~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+++.++ .+.+. . . ...-+|++....+++..+++++ +.+.++..+.++.+.+.|.+.++
T Consensus 227 ~~~~~~~~~~~~----~---~----~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~l~~~L~~~~~ 285 (398)
T 1gc0_A 227 SQALVDRIRLQG----L---K----DMTGAVLSPHDAALLMRGIKTL------NLRMDRHCANAQVLAEFLARQPQ 285 (398)
T ss_dssp CHHHHHHHHHTH----H---H----HHTCCCCCHHHHHHHHHHHTTH------HHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ChHHHHHHHHHH----h---h----ccCCCCCCHHHHHHHHhccchH------HHHHHHHHHHHHHHHHHHhcCCC
Confidence 988765 33210 0 0 0012456666666666666654 33445556667777788877653
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-11 Score=130.29 Aligned_cols=127 Identities=15% Similarity=0.204 Sum_probs=89.5
Q ss_pred CceEEE-Eecccccccccccc--------ccccCCCcEEEecccccCC----Cccccccc---c--eEEeccccccCCCc
Q psy8733 273 EASYLY-YCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVSKF---G--VIIAGAQKNIGPAG 334 (621)
Q Consensus 273 ~t~~V~-~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~~~---g--vl~asaqK~lGP~G 334 (621)
++++|+ +++..|.||...+. +++++|+++|+|.+++.+. .+.++..+ + +++.|.+|++| +|
T Consensus 187 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G 265 (425)
T 1vp4_A 187 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PG 265 (425)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GG
T ss_pred CceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cc
Confidence 678884 78888999999873 3457899999999998743 22344322 3 77889999999 88
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI-KRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i-~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+|+++.++++++++... . .....++|....+++.++|+.. .+. .++.+.++.+++.+++++.|+
T Consensus 266 ~r~G~~~~~~~~~~~l~~~-------~-----~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~L~ 332 (425)
T 1vp4_A 266 LRIGMVAGSKEFIRKIVQA-------K-----QSADLCSPAITHRLAARYLERYDLLE-QLKPTIELYRRKRTVMLNALE 332 (425)
T ss_dssp GCEEEEECCHHHHHHHHHH-------H-----HHHHSSCCHHHHHHHHHHHHHSCHHH-HTHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEeeCHHHHHHHHHH-------h-----hhhcCCCCHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 59999999988765320 0 0111244566666766676643 112 367788888889999999998
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
+.
T Consensus 333 ~~ 334 (425)
T 1vp4_A 333 EY 334 (425)
T ss_dssp HH
T ss_pred Hh
Confidence 74
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.6e-13 Score=142.31 Aligned_cols=102 Identities=54% Similarity=0.862 Sum_probs=87.5
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
+|++|+|+||++||.|++++++|++++++..+..|.+++|.....++++++|||++.||.++..|+|+.+.||+++++++
T Consensus 213 ~~~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~ 292 (386)
T 3qm2_A 213 YGVIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKI 292 (386)
T ss_dssp CSEEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cCEEEEecccccCCCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 56789999999999999999999999999888899998888878889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcccccC
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPV 551 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v 551 (621)
.++.++.+|+.|++. +||.+++
T Consensus 293 ~~~l~~~l~~~l~~~-~~~~~~~ 314 (386)
T 3qm2_A 293 NQQKAELLYGVIDNS-DFYRNDV 314 (386)
T ss_dssp HHHHHHHHHHHHHTC-SSEECCB
T ss_pred HHHHHHHHHHHHHHC-CCcccCC
Confidence 999999999999887 5776654
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-10 Score=122.45 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=93.0
Q ss_pred CCCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCC-
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGP- 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP- 332 (621)
+++++++|.+++..+.+|+..| + +++++|+++|+|.+++ ++. .++..+.+ +++++| |++++
T Consensus 179 l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG 256 (392)
T 3ruy_A 179 ITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILG--KALGGG 256 (392)
T ss_dssp CCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTT
T ss_pred hccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEc--hhhhCC
Confidence 4578999999999999999997 4 4568999999999996 432 22333332 366665 99866
Q ss_pred -CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 333 -AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 333 -~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
..+|+++.++++.+++.+. ......++|.....++.++++.+.+ +++.++.+++.+++++.|.
T Consensus 257 ~~~~G~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~l~~~L~ 320 (392)
T 3ruy_A 257 VFPISCAAANRDILGVFEPG------------SHGSTFGGNPLACAVSIAALEVLEE----EKLTERSLQLGEKLVGQLK 320 (392)
T ss_dssp TSCCEEEEECHHHHTTCCTT------------SSCCSSTTCHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHT
T ss_pred hhhhEEEEECHHHHhhhccC------------CcCCCCCCCHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHH
Confidence 3499999999887654321 1112236777888888889988755 4667788888999999998
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
+++
T Consensus 321 ~~~ 323 (392)
T 3ruy_A 321 EID 323 (392)
T ss_dssp TCC
T ss_pred Hhc
Confidence 764
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-11 Score=127.90 Aligned_cols=127 Identities=10% Similarity=0.083 Sum_probs=95.0
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC---------ccccc-ccceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR---------KFDVS-KFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~---------pIDv~-~~gvl~asaqK~lGP~Glg~ 337 (621)
++++|.+++..+.+|...|+ +++++|+++|+|.+++.|.. ..++. +.++++.|.+|++|++| |+
T Consensus 186 ~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~g-g~ 264 (409)
T 3kki_A 186 GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRA-GA 264 (409)
T ss_dssp CSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC-EE
T ss_pred CCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCCc-eE
Confidence 46899999999999999985 45689999999999987553 12332 34588899999998665 99
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCcc-CCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVY-NTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~-~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++.++++.+.+..... ...+ .+++...+.++.++++++.+. +.+.++.+++.+++++.|.+++
T Consensus 265 v~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~~l~~~L~~~g 328 (409)
T 3kki_A 265 IWCNNEVNRCVPFISY-----------PAIFSSTLLPYEAAGLETTLEIIESA---DNRRQHLDRMARKLRIGLSQLG 328 (409)
T ss_dssp EEESSSGGGTHHHHCH-----------HHHHSBCCCHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEECHHHHHHHHHhCc-----------CccccCCCcHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999888764422100 0111 235667788888899988764 6788888999999999998874
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-10 Score=124.77 Aligned_cols=126 Identities=12% Similarity=0.111 Sum_probs=86.8
Q ss_pred CceEEE-Eecccccccccccc--------ccccCCCcEEEecccccCCC----cccc---cccc--eEEeccccccCCCc
Q psy8733 273 EASYLY-YCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----KFDV---SKFG--VIIAGAQKNIGPAG 334 (621)
Q Consensus 273 ~t~~V~-~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----pIDv---~~~g--vl~asaqK~lGP~G 334 (621)
++++|+ +++..|.||...+. +++++|+++|+|.+++.+.. +.++ +..+ +.+.|..|++| +|
T Consensus 216 ~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~G 294 (448)
T 3aow_A 216 KVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PG 294 (448)
T ss_dssp CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GG
T ss_pred CCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-cc
Confidence 788885 56778899998873 34578999999999987542 2233 3333 77888899999 88
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHH--HhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI--KRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i--~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
+|+++.++++++++... . .... .++|....+++.++|+.. .+ .++.+.++.+++.+++.+.|
T Consensus 295 lriG~v~~~~~l~~~l~~~-------~----~~~~-~~~~~~~q~a~~~~L~~~~~~~--~~~~~~~~~~~~~~~l~~~L 360 (448)
T 3aow_A 295 FRIGWMVGDPGIIRKMEIA-------K----QSTD-LCTNVFGQVVAWRYVDGGYLEK--HIPEIRKFYKPRRDAMLEAL 360 (448)
T ss_dssp GCCEEEEECHHHHHHHHHH-------H----HHHH-SSCCHHHHHHHHHHHHTTHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEeCHHHHHHHHHH-------H----HHhc-CCCCHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 79999999988765320 0 0111 234555566655555431 12 36777888888889999999
Q ss_pred Hcc
Q psy8733 411 DNS 413 (621)
Q Consensus 411 ~~~ 413 (621)
++.
T Consensus 361 ~~~ 363 (448)
T 3aow_A 361 EEF 363 (448)
T ss_dssp HHH
T ss_pred HHh
Confidence 863
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-10 Score=123.74 Aligned_cols=131 Identities=15% Similarity=0.231 Sum_probs=88.6
Q ss_pred CCceEEE-Eecccccccccccc--------ccccCCCcEEEecccccCCC----ccccccc---c--eEEeccccccCCC
Q psy8733 272 PEASYLY-YCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----KFDVSKF---G--VIIAGAQKNIGPA 333 (621)
Q Consensus 272 ~~t~~V~-~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----pIDv~~~---g--vl~asaqK~lGP~ 333 (621)
+++++|. +++..|.+|...|. +++++|+++|+|.+++.+.. +.++..+ + +++.|.+|++| +
T Consensus 173 ~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~ 251 (407)
T 2zc0_A 173 QKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-T 251 (407)
T ss_dssp CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-T
T ss_pred CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-C
Confidence 3688874 66778899998874 34578999999999987543 2333333 3 67778899999 6
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHH-Hh-hCCHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI-KR-QGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i-~~-~gGl~~i~~r~~~la~~L~e~ 409 (621)
| +|+++.++++.+++... .....+. ++.....++..+++.. .+ . .++.+.++.+++.+++.+.
T Consensus 252 G~r~G~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 318 (407)
T 2zc0_A 252 GFRIGWIIAEGEILKKVLMQ-----------KQPIDFC-APAISQYIALEYLKRGYFEKY-HLEGALLGYKEKRDIMLKA 318 (407)
T ss_dssp TSCCEEEECCHHHHHHHHHH-----------HTTTTSS-SCHHHHHHHHHHHHTTHHHHH-TTTTHHHHHHHHHHHHHHH
T ss_pred CcceEEEecCHHHHHHHHHH-----------HHhhcCC-CCHHHHHHHHHHHHcCCchHH-HHHHHHHHHHHHHHHHHHH
Confidence 7 79999999887765321 0111222 3444555555555543 12 3 5778888889999999999
Q ss_pred HHcc-CCc
Q psy8733 410 IDNS-DKF 416 (621)
Q Consensus 410 L~~~-~g~ 416 (621)
|++. +|+
T Consensus 319 L~~~~~~~ 326 (407)
T 2zc0_A 319 LENHLPNA 326 (407)
T ss_dssp HHHHCTTS
T ss_pred HHHhCCCC
Confidence 9873 443
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-11 Score=127.24 Aligned_cols=126 Identities=9% Similarity=0.024 Sum_probs=87.7
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccC-CCcc--EEEEE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIG-PAGI--TVVIV 340 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lG-P~Gl--g~liv 340 (621)
++++++|.+++..+.+|...|+ +++++|+++|+|.+++.+..+.++ ++ ++++.|.+|++| |.|. |+++.
T Consensus 135 ~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~~~~~~G~~~~ 213 (386)
T 1cs1_A 135 AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-ALGADLVLHSCTKYLNGHSDVVAGVVIA 213 (386)
T ss_dssp HTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred ccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-ccCceEEEEcCcccccCCCCceeEEEEe
Confidence 3578999999999999999985 456899999999999998875444 34 489999999996 6664 99999
Q ss_pred ch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 341 RE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 341 r~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
++ ++.+++.+. .. ..-++++....+++..+++++. ...++..+..+.+.+.|.+++.
T Consensus 214 ~~~~l~~~l~~~-------~~-----~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~ 271 (386)
T 1cs1_A 214 KDPDVVTELAWW-------AN-----NIGVTGGAFDSYLLLRGLRTLV------PRMELAQRNAQAIVKYLQTQPL 271 (386)
T ss_dssp SSHHHHHHHHHH-------HH-----HHTCBCCHHHHHHHHHHHTTHH------HHHHHHHHHHHHHHHHHTTCTT
T ss_pred CcHHHHHHHHHH-------HH-----hcCCCCCHHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHHhcCCC
Confidence 87 676655321 00 0113455555555555665543 3344455566777777777653
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-11 Score=129.05 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=88.3
Q ss_pred CCCCceEEEEecccccccccccc-----cccc--CCCcEEEecccccC--CCcccccccceEEeccccccCCCc---cEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDS--QGIPLVSDMSSNFL--SRKFDVSKFGVIIAGAQKNIGPAG---ITV 337 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~--~g~llvvDavSs~G--~~pIDv~~~gvl~asaqK~lGP~G---lg~ 337 (621)
+++++++|++++..|.+|..+|+ ++++ +|+++|+|.+++.+ ..|+++ ..|+++.|+||++|++| .|+
T Consensus 164 i~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~-g~Div~~S~sK~lg~~g~~~~G~ 242 (415)
T 2fq6_A 164 LQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDF-GIDVSIQAATKYLVGHSDAMIGT 242 (415)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGG-TCSEEEEETTTTTTCSSSCCCEE
T ss_pred hccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcccc-CCeEEEEeCccccCCCCCceEEE
Confidence 56789999999999999999996 4568 99999999999954 456643 23599999999999887 699
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
++.++++++++.. +. ..++ +++....+.+..+++++. ...++..+.+..+.+.|.+.+.
T Consensus 243 l~~~~~~~~~l~~-------~~------~~~G~~~~~~~a~~~~~~l~~l~------~r~~~~~~n~~~l~~~L~~~~~ 302 (415)
T 2fq6_A 243 AVCNARCWEQLRE-------NA------YLMGQMVDADTAYITSRGLRTLG------VRLRQHHESSLKVAEWLAEHPQ 302 (415)
T ss_dssp EEECTTTHHHHHH-------HH------HHTTCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHTCTT
T ss_pred EEeCHHHHHHHHH-------HH------HhcCCCCCHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHHcCCC
Confidence 9999888766532 11 0112 223333444445555543 3345556667778888887653
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=8.1e-11 Score=121.57 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=53.9
Q ss_pred CceEEEEecccccc-cccccc--------ccccCCCcEEEecccccCC---Cccccc----ccceEEeccccccC-CCcc
Q psy8733 273 EASYLYYCDNETVD-GVEFNY--------IPDSQGIPLVSDMSSNFLS---RKFDVS----KFGVIIAGAQKNIG-PAGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~t-Gv~~p~--------i~~~~g~llvvDavSs~G~---~pIDv~----~~gvl~asaqK~lG-P~Gl 335 (621)
++++|++++..+.+ |...|. +++++|+++++|.++.++. .+.+.. ..|.++.+.||++| |.|
T Consensus 132 ~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G- 210 (347)
T 1jg8_A 132 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVG- 210 (347)
T ss_dssp CEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSC-
T ss_pred CceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCce-
Confidence 68999999998888 998773 3457899999999875532 122332 34566778999997 544
Q ss_pred EEEEEchhHHhhh
Q psy8733 336 TVVIVREDLLEYA 348 (621)
Q Consensus 336 g~livr~~ll~~~ 348 (621)
++++.++++++++
T Consensus 211 ~~~~~~~~~~~~~ 223 (347)
T 1jg8_A 211 SVVVGDRDFIERA 223 (347)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEcCHHHHHHH
Confidence 3666788777654
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.6e-11 Score=126.75 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=98.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC---ccccc-----ccc--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR---KFDVS-----KFG--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~---pIDv~-----~~g--vl~asaqK~lG 331 (621)
+++++++|.+++..|.||...+. +++++|+++|+|.+++.+.. ...+. .++ +++.|.+|++|
T Consensus 198 l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~ 277 (447)
T 3b46_A 198 ITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFA 277 (447)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTT
T ss_pred hccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcC
Confidence 45689999999999999998752 34679999999999986331 12221 233 88999999999
Q ss_pred CCc--cEEEEE-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 332 P~G--lg~liv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
++| +|+++. ++++++.+.. .. .....+++....+++.++|+.....+.++.+.++.+++.+++++
T Consensus 278 ~~G~riG~~~~~~~~l~~~l~~-------~~-----~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~ 345 (447)
T 3b46_A 278 ATGWRIGWVLSLNAELLSYAAK-------AH-----TRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTS 345 (447)
T ss_dssp CTTSCCEEEECSCHHHHHHHHH-------HH-----HHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhEEEEeCCHHHHHHHHH-------HH-----hhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHH
Confidence 889 999999 8888776531 00 11223556667778888888764342488899999999999999
Q ss_pred HHHccC
Q psy8733 409 EIDNSD 414 (621)
Q Consensus 409 ~L~~~~ 414 (621)
.|++++
T Consensus 346 ~L~~~g 351 (447)
T 3b46_A 346 IFDELG 351 (447)
T ss_dssp HHHHHT
T ss_pred HHHHCC
Confidence 999873
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=123.05 Aligned_cols=131 Identities=11% Similarity=0.104 Sum_probs=83.9
Q ss_pred Cce-EEEEecc-cccccccccc-----c---cc------cCCCcEEEecccccCCCc------c--ccccc--c---eEE
Q psy8733 273 EAS-YLYYCDN-ETVDGVEFNY-----I---PD------SQGIPLVSDMSSNFLSRK------F--DVSKF--G---VII 323 (621)
Q Consensus 273 ~t~-~V~~thn-ET~tGv~~p~-----i---~~------~~g~llvvDavSs~G~~p------I--Dv~~~--g---vl~ 323 (621)
+++ ++.+++. .|.||...+. + ++ ++|+++|+|.+.+-.... + ..... + +++
T Consensus 178 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 257 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVC 257 (418)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEE
Confidence 455 6677766 7899999884 3 33 789999999985322211 0 11112 1 667
Q ss_pred eccccccCCCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHH------HhhCCH
Q psy8733 324 AGAQKNIGPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI------KRQGGL 392 (621)
Q Consensus 324 asaqK~lGP~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i------~~~gGl 392 (621)
.|.+|.+|.+| +|+++. ++++.+++... .... ....+.+++..+..++..+++.. .+ .+
T Consensus 258 ~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~--~~ 327 (418)
T 3rq1_A 258 YSLSKGFTMYGQRVGAMIGISDDEEIADEFFEV-------NKST-SRATWSNICRPAMRTMANIVADPAKFKEYEA--ER 327 (418)
T ss_dssp EESTTTTTCCSSCCEEEEEEESSHHHHHHHHHH-------HHHH-HHHHTSSCCHHHHHHHHHHHTCHHHHHHHHH--HH
T ss_pred EeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHH-------HHHH-HhhccCCCchHHHHHHHHHhCCHHHHHHHHH--HH
Confidence 89999999777 688888 88887765321 0000 01123456677777776666422 22 25
Q ss_pred HHHHHHHHHHHHHHHHHHHcc
Q psy8733 393 AKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 393 ~~i~~r~~~la~~L~e~L~~~ 413 (621)
+.+.++.+++.+++++.|+++
T Consensus 328 ~~~~~~~~~~~~~l~~~L~~~ 348 (418)
T 3rq1_A 328 NCYYQLIRDRADIFKQEAAQV 348 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 567788888888999988876
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-09 Score=115.95 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=91.6
Q ss_pred CCceEEEE-ecccccccccccc--------ccccCCCcEEEecccc---c-CCCccccc---ccc--eEEeccccccCCC
Q psy8733 272 PEASYLYY-CDNETVDGVEFNY--------IPDSQGIPLVSDMSSN---F-LSRKFDVS---KFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 272 ~~t~~V~~-thnET~tGv~~p~--------i~~~~g~llvvDavSs---~-G~~pIDv~---~~g--vl~asaqK~lGP~ 333 (621)
+++++|++ ++..|.||...+. +++++|+++|+|.+++ + |..+.++. ..+ +++.|.+|++| +
T Consensus 189 ~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~ 267 (425)
T 2r2n_A 189 NTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-S 267 (425)
T ss_dssp CCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-S
T ss_pred CCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-C
Confidence 46788876 5667888999873 3457899999999997 3 22233333 233 77889999999 8
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ---GGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~---gGl~~i~~r~~~la~~L~e 408 (621)
| +|+++.++++++++.. . ......++|....+++.++|+.+.+. .-++.+.++.+++.+++.+
T Consensus 268 GlRiG~~~~~~~l~~~l~~-------~-----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (425)
T 2r2n_A 268 GLRIGFLTGPKPLIERVIL-------H-----IQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILA 335 (425)
T ss_dssp TTCCEEEEEEHHHHHHHHH-------H-----HHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEecCHHHHHHHHH-------H-----HHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8 6999999998876532 0 01123466777777877887764321 0266777888888888999
Q ss_pred HHHc-cCCc
Q psy8733 409 EIDN-SDKF 416 (621)
Q Consensus 409 ~L~~-~~g~ 416 (621)
.|++ ++|+
T Consensus 336 ~L~~~~~~~ 344 (425)
T 2r2n_A 336 AADKWLTGL 344 (425)
T ss_dssp HHHHHCSSS
T ss_pred HHHHHCCCC
Confidence 8887 4443
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-10 Score=120.70 Aligned_cols=128 Identities=10% Similarity=0.080 Sum_probs=88.7
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc-ccceEEeccccccC-CCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS-KFGVIIAGAQKNIG-PAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~-~~gvl~asaqK~lG-P~G--lg~liv 340 (621)
+++++++|.+++..|.+|...|+ +++++|+++|+|.+++.+..+..++ ..++++.|.+|++| |.+ .|+++.
T Consensus 146 i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~ 225 (398)
T 2rfv_A 146 MRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVG 225 (398)
T ss_dssp CCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred cCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEE
Confidence 45689999999999999999995 4568999999999999887543221 13488999999996 655 599999
Q ss_pred chhHHh-hhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 341 REDLLE-YALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 341 r~~ll~-~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++++++ .+.+ + .. ..+.++++....+++.++++.+ +...++..+.++.+.+.|.+.+
T Consensus 226 ~~~~~~~~~~~----~---~~----~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~l~~~l~~~~ 283 (398)
T 2rfv_A 226 KQEFIDQARFV----G---LK----DITGGCMSPFNAWLTLRGVKTL------GIRMERHCENALKIARFLEGHP 283 (398)
T ss_dssp CHHHHHHHHHT----H---HH----HTTCCCCCHHHHHHHHHHHTTH------HHHHHHHHHHHHHHHHHHHTCT
T ss_pred CHHHHHHHHHH----H---HH----hCCCCCCCHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHHHHcCC
Confidence 998876 3322 0 00 0002456666667766666533 3334445556677778887765
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.4e-10 Score=118.21 Aligned_cols=74 Identities=8% Similarity=0.065 Sum_probs=58.0
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccc--cceEEeccccccC-CCc-cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSK--FGVIIAGAQKNIG-PAG-ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~--~gvl~asaqK~lG-P~G-lg~liv 340 (621)
+++++++|.+++..+.+|...|+ +++++|+++|+|.+++.+....+..+ .|+++.|.||++| |.| +|.+++
T Consensus 137 i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~ 216 (412)
T 2cb1_A 137 LSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVL 216 (412)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred hccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEE
Confidence 45689999999999999999986 45678999999999998832222222 3499999999996 766 788887
Q ss_pred chh
Q psy8733 341 RED 343 (621)
Q Consensus 341 r~~ 343 (621)
+++
T Consensus 217 ~~~ 219 (412)
T 2cb1_A 217 SRE 219 (412)
T ss_dssp ECC
T ss_pred ecc
Confidence 763
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=123.65 Aligned_cols=134 Identities=12% Similarity=0.090 Sum_probs=94.1
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecc-cccCCC-------ccc-ccc-cc--eEEeccccccC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMS-SNFLSR-------KFD-VSK-FG--VIIAGAQKNIG 331 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDav-Ss~G~~-------pID-v~~-~g--vl~asaqK~lG 331 (621)
++++++.+++..|.||...+. +++++|+++|+|.+ +.++.. ++. +.. .+ +++.|.+|.+|
T Consensus 182 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 261 (412)
T 1ajs_A 182 EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFG 261 (412)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC
T ss_pred CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccC
Confidence 467888899999999998763 34578999999999 545432 232 322 23 78899999999
Q ss_pred CCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH-----hhCCHHHHHHHHHH
Q psy8733 332 PAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK-----RQGGLAKMEQNSLQ 401 (621)
Q Consensus 332 P~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~-----~~gGl~~i~~r~~~ 401 (621)
++| +|++++ ++++++.+.. . +... ....+.++|....+++.++|+... +. .++.+.++.++
T Consensus 262 ~~G~riG~~~~~~~~~~~~~~~~~---~---~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~-~~~~~~~~~~~ 332 (412)
T 1ajs_A 262 LYNERVGNLTVVAKEPDSILRVLS---Q---MQKI--VRVTWSNPPAQGARIVARTLSDPELFHEWTG-NVKTMADRILS 332 (412)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHH---H---HHHH--HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCcceEEEEEecCCHHHHHHHHH---H---HHHH--HhcccCCCChHHHHHHHHHHcCcchhHHHHH-HHHHHHHHHHH
Confidence 999 799999 7875443211 0 0000 123455667777778888887542 22 47888999999
Q ss_pred HHHHHHHHHHccC
Q psy8733 402 KSVLLYQEIDNSD 414 (621)
Q Consensus 402 la~~L~e~L~~~~ 414 (621)
+.+++++.|++++
T Consensus 333 ~~~~l~~~L~~~~ 345 (412)
T 1ajs_A 333 MRSELRARLEALK 345 (412)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998864
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.17 E-value=8.5e-10 Score=116.41 Aligned_cols=126 Identities=11% Similarity=0.150 Sum_probs=85.0
Q ss_pred CCCCceEEEEecccccccccc-c---c-----ccccCCCcEEEecccc-cC--CCccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEF-N---Y-----IPDSQGIPLVSDMSSN-FL--SRKFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~-p---~-----i~~~~g~llvvDavSs-~G--~~pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+++++++|.++++....|+.. + + +++++|+++|+|.+++ ++ ..++.++.+ +++.+ +|.+| +
T Consensus 180 l~~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~--sK~~~-~ 256 (406)
T 4adb_A 180 IDDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTT--AKALG-G 256 (406)
T ss_dssp CSTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGG-T
T ss_pred hcCCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEEe--chhhc-C
Confidence 457899999997644444431 2 1 4568999999999996 32 223333333 25543 99998 5
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++.++++.+.+.+. ..... .+++.....++.++++.+.+ +++.++.+++.+++++.|+
T Consensus 257 G~r~G~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~l~~~l~ 320 (406)
T 4adb_A 257 GFPVGALLATEECARVMTVG-----------THGTT-YGGNPLASAVAGKVLELINT----PEMLNGVKQRHDWFVERLN 320 (406)
T ss_dssp TSCCEEEEECHHHHHTCCTT-----------SSCCS-STTCHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcHHHHhhhccC-----------CcCCC-CCCCHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHH
Confidence 6 99999999998765431 11122 34566677777788887643 5778888889999999888
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
+++
T Consensus 321 ~~~ 323 (406)
T 4adb_A 321 TIN 323 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=122.74 Aligned_cols=129 Identities=11% Similarity=0.037 Sum_probs=93.8
Q ss_pred CceEEEEecccccccccccc--------cccc-----CCCcEEEecccccCC------Ccc--cccc---c---ceEEec
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDS-----QGIPLVSDMSSNFLS------RKF--DVSK---F---GVIIAG 325 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~-----~g~llvvDavSs~G~------~pI--Dv~~---~---gvl~as 325 (621)
++++|.+++..|+||...+. ++++ +|+++|+|.+++.+. .++ +++. - .+++.|
T Consensus 189 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 268 (430)
T 2x5f_A 189 DKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDG 268 (430)
T ss_dssp SEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred CCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence 78999999999999999882 3457 899999999988532 132 3422 2 366889
Q ss_pred cccccCCCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH----HHHhhCCHHHHH
Q psy8733 326 AQKNIGPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA----WIKRQGGLAKME 396 (621)
Q Consensus 326 aqK~lGP~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~----~i~~~gGl~~i~ 396 (621)
.+|++|++| +|++++ ++++++++.... ... ..+...++|....+++.++|+ |+.+ ++++.
T Consensus 269 ~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~-------~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~---~~~~~ 337 (430)
T 2x5f_A 269 ATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKV-------KGL-IRSNISSGPLPTQSAVKHVLKNNKQFDKE---IEQNI 337 (430)
T ss_dssp HHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHH-------HHH-HHTTTSSCCHHHHHHHHHHHHSCHHHHHH---HHHHH
T ss_pred cccCCCCCCCCeEEEEEecCCHHHHHHHHHHH-------hhh-hhcccCCCChHHHHHHHHHHccChHHHHH---HHHHH
Confidence 999999888 699999 988887653210 000 011345677888888888888 5433 57788
Q ss_pred HHHHHHHHHHHHHHHc
Q psy8733 397 QNSLQKSVLLYQEIDN 412 (621)
Q Consensus 397 ~r~~~la~~L~e~L~~ 412 (621)
++.+++.+++++.|++
T Consensus 338 ~~~~~~~~~l~~~L~~ 353 (430)
T 2x5f_A 338 QTLKERYEVTKEVVYA 353 (430)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999999998873
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=125.81 Aligned_cols=127 Identities=8% Similarity=0.010 Sum_probs=90.2
Q ss_pred CCCCc-eEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccCCCc---cEEE
Q psy8733 270 RDPEA-SYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPAG---ITVV 338 (621)
Q Consensus 270 i~~~t-~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~G---lg~l 338 (621)
+++++ ++|++++..|.+|...|+ +++++|+++|+|.+++.+..... .++ |+++.|.||++|+.| +|++
T Consensus 196 i~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~-~~~g~Div~~S~sK~~gg~gd~~~G~l 274 (445)
T 1qgn_A 196 LNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKA-LALGADLVLHSATKFLGGHNDVLAGCI 274 (445)
T ss_dssp HHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCT-TTTTCSEEEECTTTTTTCSSSCCCEEE
T ss_pred hccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc-cccCCEEEEECCcccccccccceEEEE
Confidence 34578 999999999999999996 45689999999999987754322 234 499999999999888 9999
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
+.++++++++.+ +. ..++ +++.+..+.+..+++.+. .+.+++.+.++++.+.|++.+++
T Consensus 275 ~~~~~l~~~l~~-------~~------~~~g~~~~~~~a~~~~~~l~~l~------~r~~~~~~~a~~l~~~L~~~p~v 334 (445)
T 1qgn_A 275 SGPLKLVSEIRN-------LH------HILGGALNPNAAYLIIRGMKTLH------LRVQQQNSTALRMAEILEAHPKV 334 (445)
T ss_dssp EECHHHHHHHHH-------HH------HHHCCCCCHHHHHHHHHHGGGHH------HHHHHHHHHHHHHHHHHHTCTTE
T ss_pred EECHHHHHHHHH-------HH------HHhCCCCCHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHhcCCCc
Confidence 999998876531 00 1122 344445455555555443 33445556678888999887754
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.2e-10 Score=119.29 Aligned_cols=261 Identities=13% Similarity=0.016 Sum_probs=149.5
Q ss_pred eeccCCCCCCCHHHHHHHHH-HHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCC-----CCC--EEEEEcCCc
Q psy8733 53 INFGAGPAKLPREVLEEVKE-TLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP-----NNY--KILFLQGGG 124 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~-~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p-----~~y--eI~f~~ggg 124 (621)
|++.+++++++++|++++.+ .+.+....+. .. ..-..+.|+.++++++.. +.. +|+|+ +||
T Consensus 36 y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y-----~~-----~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t-~g~ 104 (397)
T 3fsl_A 36 YYNEDGIIPQLQAVAEAEARLNAQPHGASLY-----LP-----MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQT-LGG 104 (397)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHSCCCCCCC-----CC-----TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE-SHH
T ss_pred EECCCCCccCcHHHHHHHHhhccCccccccC-----CC-----CCchHHHHHHHHHHHhcCCcccccccceEEEEc-CCc
Confidence 55667788888999999998 7643211110 00 012346677777777542 223 67876 678
Q ss_pred chhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccc
Q psy8733 125 TGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSK 204 (621)
Q Consensus 125 T~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~ 204 (621)
|+ +++++.. ...++.+||++.+..+++.+. ...++..|...+..+..
T Consensus 105 ~~-----a~~~~~~------------------------~~~~~~~gd~vl~~~p~~~~~--~~~~~~~g~~~~~~~~~-- 151 (397)
T 3fsl_A 105 SG-----ALKVGAD------------------------FLKRYFPESGVWVSDPTWENH--VAIFAGAGFEVSTYPWY-- 151 (397)
T ss_dssp HH-----HHHHHHH------------------------HHHHHCTTCCEEEESSCCHHH--HHHHHHTTCCEEEECCE--
T ss_pred HH-----HHHHHHH------------------------HHHhcCCCCeEEEeCCCchhH--HHHHHHcCCceEEEeee--
Confidence 88 3443211 223445666666665555543 45566677543322210
Q ss_pred ccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccC-CCCCceEEEEeccc
Q psy8733 205 YVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWN-RDPEASYLYYCDNE 283 (621)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~-i~~~t~~V~~thnE 283 (621)
.++...+++++++ +.+. ..++++++.+++.+
T Consensus 152 ----------------------------~~~~~~~d~~~l~--------------------~~l~~~~~~~~~v~~~~p~ 183 (397)
T 3fsl_A 152 ----------------------------DEATNGVRFNDLL--------------------ATLKTLQAGSIVLLHPCCH 183 (397)
T ss_dssp ----------------------------ETTTTEECHHHHH--------------------HHHTTCCTTCEEEECSSSC
T ss_pred ----------------------------eccCCcCcHHHHH--------------------HHHHhCCCCCEEEEeCCCC
Confidence 0001112222210 1111 12578899999889
Q ss_pred ccccccccc--------ccccCCCcEEEecccccCCCc-----ccc----cccc--eEEeccccccCCCc--cEEEEE--
Q psy8733 284 TVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK-----FDV----SKFG--VIIAGAQKNIGPAG--ITVVIV-- 340 (621)
Q Consensus 284 T~tGv~~p~--------i~~~~g~llvvDavSs~G~~p-----IDv----~~~g--vl~asaqK~lGP~G--lg~liv-- 340 (621)
|.||...+. +++++|+++|+|.+.+-+... ..+ +..+ +++.|..|.+|++| +|++++
T Consensus 184 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~ 263 (397)
T 3fsl_A 184 NPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMC 263 (397)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEEC
T ss_pred CCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEec
Confidence 999998763 345789999999997765532 111 1223 67778889999999 677765
Q ss_pred -chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHH-----HhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 341 -REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI-----KRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 341 -r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i-----~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++++... .... ....+.+||.....++..+++.- .+. .++.+.++.+++.+++++.|++++
T Consensus 264 ~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~ 334 (397)
T 3fsl_A 264 EDAEAAGRVLGQ------LKAT--VRRNYSSPPNFGAQVVAAVLNDEALKASWLK-EVEEMRTRILAMRQELVKVLSTEM 334 (397)
T ss_dssp SSHHHHHHHHHH------HHHH--HHTTTSSCCSHHHHHHHHHHTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHH------HHHH--HHhccCCCCHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444432110 0000 01234455555555555555421 022 478888999999999999998864
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.2e-10 Score=117.10 Aligned_cols=125 Identities=16% Similarity=0.178 Sum_probs=85.5
Q ss_pred CCCCceEEEEecccccccc-ccc---c-----ccccCCCcEEEecccc-cC--CCccccccc----ceEEeccccccC-C
Q psy8733 270 RDPEASYLYYCDNETVDGV-EFN---Y-----IPDSQGIPLVSDMSSN-FL--SRKFDVSKF----GVIIAGAQKNIG-P 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv-~~p---~-----i~~~~g~llvvDavSs-~G--~~pIDv~~~----gvl~asaqK~lG-P 332 (621)
+++++++|.+++..+.+|+ ..+ + +++++|+++|+|.+++ ++ ..++.++.+ |++.+ .|++| +
T Consensus 180 l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~--sK~~~~G 257 (397)
T 2ord_A 180 MSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTT--AKGLGGG 257 (397)
T ss_dssp CCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTT
T ss_pred hhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeee--ccccCCC
Confidence 4568999999999999998 443 2 3467899999999997 33 123444333 35544 69998 3
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
-++|++++++++. .+.+ . ..... .++|....+++.++|+.+.+ +++.++.+++.+++++.|++
T Consensus 258 ~r~G~~~~~~~~~-~l~~---~--------~~~~~-~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~l~~~L~~ 320 (397)
T 2ord_A 258 VPIGAVIVNERAN-VLEP---G--------DHGTT-FGGNPLACRAGVTVIKELTK----EGFLEEVEEKGNYLMKKLQE 320 (397)
T ss_dssp SCCEEEEECSTTC-CCCT---T--------SSCCS-STTCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEEchHhc-ccCC---C--------CcCCC-CCCCHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHH
Confidence 3599999998864 3321 0 11122 35566777888888888754 35677788888888888876
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 321 ~ 321 (397)
T 2ord_A 321 M 321 (397)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-10 Score=121.17 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=90.9
Q ss_pred CCceEEEEeccccccccccc---c-----ccccCCCcEEEecccccCC----Cccc---cc-c-------cc--eEEecc
Q psy8733 272 PEASYLYYCDNETVDGVEFN---Y-----IPDSQGIPLVSDMSSNFLS----RKFD---VS-K-------FG--VIIAGA 326 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p---~-----i~~~~g~llvvDavSs~G~----~pID---v~-~-------~g--vl~asa 326 (621)
+++++|.+|+..|.||...| + +++++|+++|+|.+++.+. ...+ +. + .| +++.|.
T Consensus 187 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~ 266 (428)
T 1iay_A 187 IKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSL 266 (428)
T ss_dssp CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEES
T ss_pred CceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecc
Confidence 46899999999999999988 3 3457899999999998532 1122 22 1 35 788999
Q ss_pred ccccCCCcc--EEEEE-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH--hhCCHHHHHHHHHH
Q psy8733 327 QKNIGPAGI--TVVIV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK--RQGGLAKMEQNSLQ 401 (621)
Q Consensus 327 qK~lGP~Gl--g~liv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~--~~gGl~~i~~r~~~ 401 (621)
+|++|.+|+ |+++. ++++++.+.. . ..+.+++.....++..+++... +. .++.+.++.++
T Consensus 267 sK~~g~~Glr~G~~~~~~~~~~~~~~~-------~-------~~~~~~~~~~~~a~~~~l~~~~~~~~-~~~~~~~~~~~ 331 (428)
T 1iay_A 267 SKDMGLPGFRVGIIYSFNDDVVNCARK-------M-------SSFGLVSTQTQYFLAAMLSDEKFVDN-FLRESAMRLGK 331 (428)
T ss_dssp TTTSSCGGGCEEEEEESCHHHHHHHHH-------H-------HTTSCCCHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHH
T ss_pred hhhcCCCCceEEEEEeCCHHHHHHHHH-------H-------HhcccCCHHHHHHHHHHhcChHHHHH-HHHHHHHHHHH
Confidence 999998885 99998 5777765431 0 1123455556666666665321 12 36788888899
Q ss_pred HHHHHHHHHHccCCc
Q psy8733 402 KSVLLYQEIDNSDKF 416 (621)
Q Consensus 402 la~~L~e~L~~~~g~ 416 (621)
+.+++++.|+++ |+
T Consensus 332 ~~~~l~~~L~~~-g~ 345 (428)
T 1iay_A 332 RHKHFTNGLEVV-GI 345 (428)
T ss_dssp HHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHhc-CC
Confidence 999999999887 34
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-10 Score=120.49 Aligned_cols=128 Identities=10% Similarity=0.035 Sum_probs=85.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccCCCc---cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPAG---ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~G---lg~li 339 (621)
+.+++++|++++..+.+|...|+ +++++|+++|+|.+++.+.. .+...+ |+++.|.+|++|++| .|+++
T Consensus 148 i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~ 226 (392)
T 3qhx_A 148 IRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-QQPLSLGADVVLHSTTKYIGGHSDVVGGALV 226 (392)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-CCGGGGTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred hCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-CChHHhCCcEEEEcCccccCCCCCceEEEEE
Confidence 55789999999999999999986 45688999999999986532 222233 499999999999877 88888
Q ss_pred Ec-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+ +++.+++.. +.. ..-.+++....+++...++. ++...++..+.++.+.+.|++.+++
T Consensus 227 ~~~~~~~~~l~~-------~~~-----~~g~~~~~~~~~~~~~~l~~------l~~~~~~~~~~~~~l~~~L~~~~~v 286 (392)
T 3qhx_A 227 TNDEELDQSFAF-------LQN-----GAGAVPGPFDAYLTMRGLKT------LVLRMQRHSENAAAVAEFLAEHPAI 286 (392)
T ss_dssp ESCHHHHHHHHH-------HHH-----HHCCCCCHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred ECcHHHHHHHHH-------HHH-----hcCCCCCHHHHHHHHhhhhH------HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88 466654421 000 01123333333333333332 4455666777788888888887643
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-09 Score=115.13 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=88.4
Q ss_pred CCceEEEEecc-ccccccccc----c-----ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccC-C-
Q psy8733 272 PEASYLYYCDN-ETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIG-P- 332 (621)
Q Consensus 272 ~~t~~V~~thn-ET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lG-P- 332 (621)
+++++|.+.++ .+.+|+..+ + +++++|+++|+|.+++ +|.. ...++.+ +++.+| |.+| +
T Consensus 203 ~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~s--K~l~~G~ 280 (429)
T 1s0a_A 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG--KALTGGT 280 (429)
T ss_dssp TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSS
T ss_pred CCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEEEec--ccccCCC
Confidence 46778888877 788898766 2 3467899999999998 6532 1222222 366665 9896 4
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
.++|++++++++.+.+...... . .. .....++|..++.++.++++.+.+. .+.++.+++.+++++.|++
T Consensus 281 ~~iG~~~~~~~~~~~l~~~~~~-----~-~~-~~~t~~~n~~~~~a~~aal~~~~~~----~~~~~~~~~~~~l~~~L~~ 349 (429)
T 1s0a_A 281 MTLSATLTTREVAETISNGEAG-----C-FM-HGPTFMGNPLACAAANASLAILESG----DWQQQVADIEVQLREQLAP 349 (429)
T ss_dssp SCCEEEEECHHHHHHHHTSTTS-----S-CS-CCCTTTTCHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHGG
T ss_pred ccceEEEeCHHHHHHhhcCCCc-----c-cc-cCCCCCCCHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHH
Confidence 6799999999988766431100 0 00 1112356777888888999988763 4567778888899999887
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 350 l 350 (429)
T 1s0a_A 350 A 350 (429)
T ss_dssp G
T ss_pred H
Confidence 5
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=120.60 Aligned_cols=131 Identities=11% Similarity=0.008 Sum_probs=94.0
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC-----cccc----------ccc-c-eEEeccc
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR-----KFDV----------SKF-G-VIIAGAQ 327 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~-----pIDv----------~~~-g-vl~asaq 327 (621)
++++|++++..|.||..++. +++++++++++|.+.+.+.. ..++ .+. . +++.|.+
T Consensus 237 ~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S 316 (500)
T 3tcm_A 237 NVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVS 316 (500)
T ss_dssp EEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESS
T ss_pred CceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCC
Confidence 68899999999999999873 35678999999998765221 1221 111 2 5567889
Q ss_pred ccc-CCCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-----------HHHhhC
Q psy8733 328 KNI-GPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-----------WIKRQG 390 (621)
Q Consensus 328 K~l-GP~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-----------~i~~~g 390 (621)
|++ |++| +|++++ ++++++.+.. . .+...++++.+.+++..+++ |..+
T Consensus 317 K~~~g~~G~R~G~~~~~~~~~~~~~~l~~-------~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-- 381 (500)
T 3tcm_A 317 KGYYGECGKRGGYFEITGFSAPVREQIYK-------I------ASVNLCSNITGQILASLVMNPPKASDESYASYKAE-- 381 (500)
T ss_dssp STTTCCGGGCCEEEEEESCCTTHHHHHHH-------H------HHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHH--
T ss_pred ccCCCCCccceEEEEEeCCCHHHHHHHHH-------H------HhcccCCCHHHHHHHHHHhcCccccchhHHHHHHH--
Confidence 999 8888 588887 7888766531 0 12345677888888888875 4443
Q ss_pred CHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 391 GLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 391 Gl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
++.+.++.+++++++++.|.+++|+...
T Consensus 382 -~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 409 (500)
T 3tcm_A 382 -KDGILASLARRAKALEHAFNKLEGITCN 409 (500)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTSTTEECC
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCcEEe
Confidence 5788888999999999999988766543
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=122.01 Aligned_cols=103 Identities=8% Similarity=0.013 Sum_probs=72.2
Q ss_pred CCCceE-EEEeccccccc-ccccc-----ccccCCCcEEEecccccCCC-------cccccccceEEeccccccCCCccE
Q psy8733 271 DPEASY-LYYCDNETVDG-VEFNY-----IPDSQGIPLVSDMSSNFLSR-------KFDVSKFGVIIAGAQKNIGPAGIT 336 (621)
Q Consensus 271 ~~~t~~-V~~thnET~tG-v~~p~-----i~~~~g~llvvDavSs~G~~-------pIDv~~~gvl~asaqK~lGP~Glg 336 (621)
++++++ |++++..+.+| ...++ +++++|+++|+|.+++.+.. ++++ ..++++.|.||+++++++|
T Consensus 138 ~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~di~~~S~sK~l~g~~~G 216 (374)
T 2aeu_A 138 IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL-GADLVVTSTDKLMEGPRGG 216 (374)
T ss_dssp CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH-TCSEEEEETTSSSSSCSCE
T ss_pred CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcccc-CCcEEEecCcccccCcceE
Confidence 457899 99988888889 56664 45678999999998876531 2221 1248899999999656899
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHH
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI 386 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i 386 (621)
+++.++++++++... .. ....+++....+++..+++.+
T Consensus 217 ~~~~~~~~~~~l~~~-------~~-----~~~~~~~~~~~~a~~~al~~~ 254 (374)
T 2aeu_A 217 LLAGKKELVDKIYIE-------GT-----KFGLEAQPPLLAGIYRALKNF 254 (374)
T ss_dssp EEEEEHHHHHHHHHH-------HH-----TTTCBCCHHHHHHHHHHHHHC
T ss_pred EEEECHHHHHHHHHh-------hc-----cccCCCCHHHHHHHHHHHHHH
Confidence 999999998766321 10 011256666777777777654
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.2e-10 Score=119.40 Aligned_cols=127 Identities=14% Similarity=0.184 Sum_probs=85.3
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Cccccc----c---------cc--eEEe
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKFDVS----K---------FG--VIIA 324 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pIDv~----~---------~g--vl~a 324 (621)
+++++|.+++..+.+|+..+. +++++|+++|+|.+++.+. ....+. + .+ +++.
T Consensus 190 ~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~ 269 (435)
T 3piu_A 190 LRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVY 269 (435)
T ss_dssp CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEE
T ss_pred CCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEE
Confidence 478999999999999998874 3457899999999998522 112221 1 33 7788
Q ss_pred ccccccCCCc--cEEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH---HHHhhCCHHHHHHH
Q psy8733 325 GAQKNIGPAG--ITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA---WIKRQGGLAKMEQN 398 (621)
Q Consensus 325 saqK~lGP~G--lg~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~---~i~~~gGl~~i~~r 398 (621)
|.+|++|.+| +|+++.+ +++.+.+.. ...+.+++.....++.++++ |+.+ .++.+.++
T Consensus 270 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~ 333 (435)
T 3piu_A 270 SLSKDLGLPGFRVGAIYSNDDMVVAAATK--------------MSSFGLVSSQTQHLLSAMLSDKKLTKN--YIAENHKR 333 (435)
T ss_dssp ESSSSSCCGGGCEEEEEESCHHHHHHHHH--------------HGGGSCCCHHHHHHHHHHHHCHHHHHH--HHHHHHHH
T ss_pred eeecccCCCceeEEEEEeCCHHHHHHHHH--------------HhhcCCCCHHHHHHHHHHhcChHHHHH--HHHHHHHH
Confidence 9999999777 6999985 455443311 01223334444445444544 4333 36778888
Q ss_pred HHHHHHHHHHHHHccC
Q psy8733 399 SLQKSVLLYQEIDNSD 414 (621)
Q Consensus 399 ~~~la~~L~e~L~~~~ 414 (621)
.+++.+++++.|.+.+
T Consensus 334 ~~~~~~~l~~~L~~~g 349 (435)
T 3piu_A 334 LKQRQKKLVSGLQKSG 349 (435)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8889999999998863
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=120.99 Aligned_cols=128 Identities=9% Similarity=0.076 Sum_probs=88.1
Q ss_pred ceEEEEecccccccccccc--------ccccCCCcEEEecccccCC--------Ccc-cccc--c---c-eEEecccccc
Q psy8733 274 ASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS--------RKF-DVSK--F---G-VIIAGAQKNI 330 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~--------~pI-Dv~~--~---g-vl~asaqK~l 330 (621)
+.++.+++.+|.||...+. +++++|+++|+|.+++-.. .++ ++.. - . +++.|.+|.+
T Consensus 177 ~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 256 (412)
T 1yaa_A 177 SIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA 256 (412)
T ss_dssp CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCC
Confidence 4555569999999998873 3457899999999985321 133 3322 1 2 6678889999
Q ss_pred CCCc--cEEEE--E-----chh----HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH-----hhCCH
Q psy8733 331 GPAG--ITVVI--V-----RED----LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK-----RQGGL 392 (621)
Q Consensus 331 GP~G--lg~li--v-----r~~----ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~-----~~gGl 392 (621)
||+| +|+++ . +++ +++++.. . ....+.++|....+++.++|+... +. .+
T Consensus 257 ~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~----------~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~-~~ 323 (412)
T 1yaa_A 257 GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAK----------I--IRSEVSNPPAYGAKIVAKLLETPELTEQWHK-DM 323 (412)
T ss_dssp CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH----------H--HHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH-HH
T ss_pred CCcCCcceEEEEEecCCCCCHHHHHHHHHHHHH----------H--HhhccCCCChHHHHHHHHHhCCHHHHHHHHH-HH
Confidence 9999 58888 6 455 4433211 0 112345667777777777776542 22 57
Q ss_pred HHHHHHHHHHHHHHHHHHHccC
Q psy8733 393 AKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 393 ~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+++.++.+++.+++++.|++++
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1yaa_A 324 VTMSSRITKMRHALRDHLVKLG 345 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 8899999999999999998864
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-10 Score=121.84 Aligned_cols=133 Identities=12% Similarity=0.140 Sum_probs=88.8
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEeccc-ccCC--Cccccccc----ceEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSS-NFLS--RKFDVSKF----GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavS-s~G~--~pIDv~~~----gvl~asaqK~lGP~G- 334 (621)
+++++|.+.++.+.+|+..| + +++++|+++|+|.++ ++|. ....++.+ |++.+ .|++|+ |
T Consensus 218 ~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~--sK~l~~-G~ 294 (449)
T 3a8u_X 218 SNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCI--AKQVTN-GA 294 (449)
T ss_dssp GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGT-TS
T ss_pred CCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEEEE--cccccC-CC
Confidence 36788888888777898776 3 456899999999999 5763 22333333 35544 499985 7
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.+++++++.+.+...... -.... .....++ ++|..+.+++.++|+.+.+. .+.++.+++.+++++.|++
T Consensus 295 ~~~G~~~~~~~~~~~l~~~~~~-~~~~~-~~~~~t~-~~~~~~~aa~~aal~~~~~~----~~~~~~~~~~~~l~~~L~~ 367 (449)
T 3a8u_X 295 IPMGAVIASTEIYQTFMNQPTP-EYAVE-FPHGYTY-SAHPVACAAGLAALCLLQKE----NLVQSVAEVAPHFEKALHG 367 (449)
T ss_dssp SCCEEEEEEHHHHHHHHTCSSC-TTSCS-SCCCCTT-TTCHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEECHHHHHHhhccCcc-ccccc-ccccCCC-cccHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHH
Confidence 99999999988776542110 00000 0112233 44566778888899988764 3567778888899999887
Q ss_pred cC
Q psy8733 413 SD 414 (621)
Q Consensus 413 ~~ 414 (621)
++
T Consensus 368 l~ 369 (449)
T 3a8u_X 368 IK 369 (449)
T ss_dssp TT
T ss_pred Hh
Confidence 54
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=124.44 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=86.3
Q ss_pred CCCCceEEEEecccccccccccc-----ccccC----CCcEEEecccccCCCcccccccc--eEEeccccccCCCc--c-
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQ----GIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAG--I- 335 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~----g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~G--l- 335 (621)
+++++++|++++..+.+|..+|+ +++++ |+++|+|.+++.+... ++.+++ +++.|.||++||+| +
T Consensus 135 i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~~~~~di~~~S~sK~~g~~G~rig 213 (393)
T 1n8p_A 135 IKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLNFGADIVVHSATKYINGHSDVVL 213 (393)
T ss_dssp SCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGGGTCSEEEEETTTTTTCSSCCCC
T ss_pred cccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHHHcCCeEEEEECcccccCCCCcee
Confidence 45679999999999999999996 45677 9999999999987653 444444 89999999999999 7
Q ss_pred EEEEEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|+++.+ +++++++.+. .. ..+ .+++....+++..+++++ +...++..+.+..+.+.|.+.+
T Consensus 214 G~~~~~~~~~~~~l~~~-------~~--~~g---~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~l~~~L~~~~ 275 (393)
T 1n8p_A 214 GVLATNNKPLYERLQFL-------QN--AIG---AIPSPFDAWLTHRGLKTL------HLRVRQAALSANKIAEFLAADK 275 (393)
T ss_dssp EEEEESCHHHHHHHHHH-------HH--HHC---CCCCHHHHHHHHHHHTTH------HHHHHHHHHHHHHHHHHHTSCT
T ss_pred EEEEeCCHHHHHHHHHH-------HH--hcC---CCCCHHHHHHHHhccchH------HHHHHHHHHHHHHHHHHHHhCC
Confidence 888886 6777665321 00 001 233334444444555544 3334445556667777777654
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-09 Score=116.05 Aligned_cols=133 Identities=16% Similarity=0.176 Sum_probs=85.8
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCcc-----cc----cccc--eEEeccccccCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKF-----DV----SKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pI-----Dv----~~~g--vl~asaqK~lGP 332 (621)
++++++.+++..|.||+..+. +++++|+++|+|.+.+-+.... .+ +..+ +++.|..|.+|+
T Consensus 194 ~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 273 (420)
T 4f4e_A 194 PGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSL 273 (420)
T ss_dssp TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTC
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcC
Confidence 678999999999999998773 3457899999999875544321 11 1122 778899999999
Q ss_pred Cc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH-----hhCCHHHHHHHHHHH
Q psy8733 333 AG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK-----RQGGLAKMEQNSLQK 402 (621)
Q Consensus 333 ~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~-----~~gGl~~i~~r~~~l 402 (621)
+| +|++++ ++++++++.. .+... ....+.++|.....++..+++... +. .++.+.++.+++
T Consensus 274 ~G~RiG~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~ 344 (420)
T 4f4e_A 274 YGERVGALSIITDSKDEAARVLS------QLKRV--IRTNYSNPPTHGGAIVAAVLASPELRASWVQ-ELGEMRDRIRAM 344 (420)
T ss_dssp GGGCEEEEEEECSSHHHHHHHHH------HHHHH--HHTTTSSCCSHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred cCCCcEEEEEEcCCHHHHHHHHH------HHHHH--HhcccCCCCHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHH
Confidence 99 788764 3454433210 00000 012334455555555555444311 12 368888999999
Q ss_pred HHHHHHHHHcc
Q psy8733 403 SVLLYQEIDNS 413 (621)
Q Consensus 403 a~~L~e~L~~~ 413 (621)
.+++++.|+++
T Consensus 345 ~~~l~~~L~~~ 355 (420)
T 4f4e_A 345 RNGLVERLKAA 355 (420)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999999986
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6e-09 Score=110.73 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=82.4
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~G- 334 (621)
+++++|.+.++.+.+|+..+ + +++++|+++|+|.+++ ++. ....++.+ +++ |..|++|+ |
T Consensus 198 ~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-Gl 274 (426)
T 1sff_A 198 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GF 274 (426)
T ss_dssp GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SS
T ss_pred CceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-CC
Confidence 36778887665444896655 2 4567899999999998 432 12223333 244 55699998 8
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|++++++++++.+.+. ....+ .++|.....++.++|+++.+. .+.++.+++.+++++.|+++
T Consensus 275 riG~~~~~~~~~~~l~~~-----------~~~~~-~~~~~~~~~a~~aal~~~~~~----~~~~~~~~~~~~l~~~l~~~ 338 (426)
T 1sff_A 275 PLAGVTGRAEVMDAVAPG-----------GLGGT-YAGNPIACVAALEVLKVFEQE----NLLQKANDLGQKLKDGLLAI 338 (426)
T ss_dssp CCEEEEEEHHHHTTSCTT-----------SBCCS-SSSCHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcHHHHhhhccC-----------CcCcC-CCCCHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 59999999987654320 01122 345667778888899998763 34567777888888888764
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-09 Score=113.05 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=80.4
Q ss_pred cCCCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCccc-----ccccc--eEEeccccccCC
Q psy8733 268 WNRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKFD-----VSKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 268 l~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pID-----v~~~g--vl~asaqK~lGP 332 (621)
+.+++++++|.+++..|.||+..+. +++++|+++|+|.+++.+...+. .+..+ +++.|.+| ++.
T Consensus 175 l~~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~ 253 (417)
T 3g7q_A 175 LHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGL 253 (417)
T ss_dssp CCCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTC
T ss_pred hccccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccC
Confidence 3356789999999999999999883 35689999999999874322221 12223 77889999 466
Q ss_pred Cc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHH----H-HHHHHHHHHHH
Q psy8733 333 AG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLA----K-MEQNSLQKSVL 405 (621)
Q Consensus 333 ~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~----~-i~~r~~~la~~ 405 (621)
+| +|+++.++++.+++... . ....+ +++.....++..+ +.+. .+. . +.++.+++.+.
T Consensus 254 ~G~r~G~~~~~~~~~~~~~~~-------~----~~~~~-~~~~~~~~~~~~~---l~~~-~~~~~~~~~~~~~~~~~~~~ 317 (417)
T 3g7q_A 254 PGSRCGIIIANDKTITAIANM-------N----GIISL-APGGMGPAMMCEM---IKRN-DLLRLSETVIKPFYYQRVQQ 317 (417)
T ss_dssp TTSCCEEEECCHHHHHHHHHH-------H----HHHCC-CCCSHHHHHHHHH---HHTT-CHHHHHHHTHHHHHHHHHHH
T ss_pred CCcceEEEEeCHHHHHHHHHh-------h----cceee-CCCcHHHHHHHHH---HcCc-chHHHHHHHHHHHHHHHHHH
Confidence 66 89999999888765320 0 01112 2333333333333 3322 332 2 55566777777
Q ss_pred HHHHHHc
Q psy8733 406 LYQEIDN 412 (621)
Q Consensus 406 L~e~L~~ 412 (621)
+++.|.+
T Consensus 318 ~~~~l~~ 324 (417)
T 3g7q_A 318 TIAIIRR 324 (417)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7787766
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=114.82 Aligned_cols=133 Identities=14% Similarity=0.212 Sum_probs=89.3
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC-------ccc-cccc-c--eEEeccccccCCC
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR-------KFD-VSKF-G--VIIAGAQKNIGPA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~-------pID-v~~~-g--vl~asaqK~lGP~ 333 (621)
+++++.+++..|.||...+. +++++|+++|+|.+++.... ++. ++.. + +++.|.+|.+|++
T Consensus 172 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 251 (396)
T 2q7w_A 172 GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLY 251 (396)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccccc
Confidence 57888889999999998873 34578999999999875432 222 2222 3 6788889999999
Q ss_pred c--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHH-----HhhCCHHHHHHHHHHHH
Q psy8733 334 G--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI-----KRQGGLAKMEQNSLQKS 403 (621)
Q Consensus 334 G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i-----~~~gGl~~i~~r~~~la 403 (621)
| +|++++ +++.++.+.. . +... ....+.++|....+++.++|+.. .+. .++.+.++.+++.
T Consensus 252 G~riG~~~~~~~~~~~~~~~~~---~---~~~~--~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~ 322 (396)
T 2q7w_A 252 NERVGACTLVAADSETVDRAFS---Q---MKAA--IRANYSNPPAHGASVVATILSNDALRAIWEQ-ELTDMRQRIQRMR 322 (396)
T ss_dssp GGCCEEEEEECSSHHHHHHHHH---H---HHHH--HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHH-HHHHC-CHHHHHH
T ss_pred ccccceEEEEcCCHHHHHHHHH---H---HHHH--HhhccCCCCcHHHHHHHHHhcChhhHHHHHH-HHHHHHHHHHHHH
Confidence 9 599997 5654433211 0 0000 11245566777777777777543 012 4777888889999
Q ss_pred HHHHHHHHccC
Q psy8733 404 VLLYQEIDNSD 414 (621)
Q Consensus 404 ~~L~e~L~~~~ 414 (621)
+++++.|++++
T Consensus 323 ~~l~~~L~~~~ 333 (396)
T 2q7w_A 323 QLFVNTLQEKG 333 (396)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 99999998864
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-08 Score=109.78 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=84.9
Q ss_pred CCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCCc
Q psy8733 271 DPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPAG 334 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~G 334 (621)
++++++|.+.++.+.+|+..+ + +++++|+++|+|.+++ +|- ..+.++.+ |++ +..|.+|+ |
T Consensus 221 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~-G 297 (439)
T 2oat_A 221 DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG-G 297 (439)
T ss_dssp STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-T
T ss_pred CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccC-C
Confidence 356888888777667898662 2 4568999999999996 431 22222333 355 44599985 6
Q ss_pred ---cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 335 ---ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 335 ---lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+|+++.++++.+.+.+. ....++ +.|.....+..++|+.+.++ .+.++.+++.+++++.|+
T Consensus 298 ~~~~G~v~~~~~~~~~l~~~-----------~~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~ 361 (439)
T 2oat_A 298 LYPVSAVLCDDDIMLTIKPG-----------EHGSTY-GGNPLGCRVAIAALEVLEEE----NLAENADKLGIILRNELM 361 (439)
T ss_dssp SSCCEEEEECHHHHTTSCTT-----------SSCCSS-TTCHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECHHHHhccCCC-----------CcccCC-CcCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHH
Confidence 99999999987654320 122344 34455667777889988764 456777888899999998
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 362 ~l 363 (439)
T 2oat_A 362 KL 363 (439)
T ss_dssp TS
T ss_pred Hh
Confidence 76
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.07 E-value=9.3e-10 Score=118.01 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=58.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC-----cccccccc--eEEeccccccCCC-
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR-----KFDVSKFG--VIIAGAQKNIGPA- 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~-----pIDv~~~g--vl~asaqK~lGP~- 333 (621)
+++++++|.+++..+.||+.+|. +++++|+++|+|.+++.+.. ++.....+ +++.|.+|+ +.+
T Consensus 203 ~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G 281 (444)
T 3if2_A 203 KEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPG 281 (444)
T ss_dssp HTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGG
T ss_pred cCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCC
Confidence 46789999999888999999883 35689999999999984322 22222223 888999997 544
Q ss_pred -ccEEEEEchhHHhhh
Q psy8733 334 -GITVVIVREDLLEYA 348 (621)
Q Consensus 334 -Glg~livr~~ll~~~ 348 (621)
++|+++.++++.+.+
T Consensus 282 ~r~G~~~~~~~l~~~~ 297 (444)
T 3if2_A 282 MRTGIIVADAKVIEAV 297 (444)
T ss_dssp GCCEEEECCHHHHHHH
T ss_pred CceEEEEECHHHHHHH
Confidence 478888898887765
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-09 Score=117.48 Aligned_cols=134 Identities=8% Similarity=0.009 Sum_probs=89.1
Q ss_pred CCCCceEEEEec----ccccccccccc-----cccc--CCCcEEEecccccCCCccccccc--ceEEeccccccCCCc--
Q psy8733 270 RDPEASYLYYCD----NETVDGVEFNY-----IPDS--QGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPAG-- 334 (621)
Q Consensus 270 i~~~t~~V~~th----nET~tGv~~p~-----i~~~--~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~G-- 334 (621)
+++++++|++++ ..+.+|...|+ ++++ +|+++++|.+.+.+....+..++ |+++.|.+|++|+.|
T Consensus 156 i~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~ 235 (409)
T 3jzl_A 156 MTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAK 235 (409)
T ss_dssp CCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCS
T ss_pred ccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCc
Confidence 567899999998 78888999885 4567 89999999998877632233333 599999999997544
Q ss_pred -cEEEEEchhHHhhhCC--CCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 335 -ITVVIVREDLLEYALP--ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 335 -lg~livr~~ll~~~~~--~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
.|+++.++++++++.. ..|.+ . . ....++.. ..+ +++-+.. ++.+.++..+.+.++.+.|+
T Consensus 236 ~GG~v~~~~~li~~l~~~~~~~~~---g--~---~~g~~~~~--~~~---~l~gl~~---~~~r~~~~~~~a~~la~~L~ 299 (409)
T 3jzl_A 236 TGGYIAGKEALVDLCGYRLTTPGI---G--R---EAGASLYS--LLE---MYQGFFL---APHVTAQAIKGARFTAAMLA 299 (409)
T ss_dssp SCEEEEECHHHHHHHHHHHSCTTT---G--G---GCCCCTTC--HHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHHHHhccccc---c--c---cccccHHH--HHH---HHHHHhh---HHHHHHHHHHHHHHHHHHHH
Confidence 4999999999887643 11111 0 0 00111211 122 2333322 34566777888899999999
Q ss_pred ccCCcccCc
Q psy8733 412 NSDKFYECP 420 (621)
Q Consensus 412 ~~~g~~~~~ 420 (621)
+++ +.+.|
T Consensus 300 ~~g-~~v~p 307 (409)
T 3jzl_A 300 EFG-VEADP 307 (409)
T ss_dssp HTT-CEEES
T ss_pred hCC-CcccC
Confidence 986 55544
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.1e-09 Score=111.04 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=87.9
Q ss_pred CCCCceEEEEecccccccccccc-----cccc-CCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDS-QGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~-~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~l 338 (621)
+++++++|.+++..|.+|...|+ ++++ +|+++|+|.+++.+. .|+++ ..++++.|.+|++| |.+ .|++
T Consensus 144 i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~-~~di~~~S~sK~~~~~g~ri~G~~ 222 (404)
T 1e5e_A 144 MKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDF-GVDVVVHSATKYINGHTDVVAGLI 222 (404)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGG-TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred cCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcccc-CCEEEEEcCccccCCCCCCeEEEE
Confidence 45689999999999999999986 4578 999999999999887 45532 23489999999997 555 5999
Q ss_pred EEchhHHh-hhCCCCCceeeccccccCCCc-cCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 339 IVREDLLE-YALPITPTVFHFKINADNNSV-YNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 339 ivr~~ll~-~~~~~~P~~ld~~~~~~~~s~-~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
++++++++ ++.+... .. -.+++.+..+++..+++. ++.+.++..+.++.+.+.+++.+
T Consensus 223 ~~~~~~~~~~l~~~~~------------~~~g~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~~l~~~~ 282 (404)
T 1e5e_A 223 CGKADLLQQIRMVGIK------------DITGSVISPHDAWLITRGLST------LNIRMKAESENAMKVAEYLKSHP 282 (404)
T ss_dssp EECHHHHHHHHHTCCC------------CCCCCCCCHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred EECHHHHHHHHHHHHH------------hCCCCCCCHHHHHHHHHhHhH------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999887 6543211 11 123444444544445432 34445555666777777777764
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-09 Score=114.82 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=93.7
Q ss_pred CCceEEEEecccccccccccccccc-CC--CcEEEecccccCC-Ccccccccc--eEEeccccccCCCcc--EEEEE-ch
Q psy8733 272 PEASYLYYCDNETVDGVEFNYIPDS-QG--IPLVSDMSSNFLS-RKFDVSKFG--VIIAGAQKNIGPAGI--TVVIV-RE 342 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~i~~~-~g--~llvvDavSs~G~-~pIDv~~~g--vl~asaqK~lGP~Gl--g~liv-r~ 342 (621)
+++++|.+++-.|.||...+.+.+. ++ +++|+|.+...+. .++.. ..+ +++.|.+|.+|++|+ |++++ ++
T Consensus 156 ~~~k~v~l~~p~NPtG~~~~~l~~~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~ 234 (391)
T 3bwn_A 156 KGPYIELVTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIMLFTFSKITGHAGSRIGWALVKDK 234 (391)
T ss_dssp CSCEEEEEESSCTTTCCCCCCCC-----CCCEEEEECTTCSTTTSCCCC-CBCCSEEEEEHHHHHSCGGGCEEEEEECCH
T ss_pred CCCEEEEECCCCCCCchhHHHHHHHhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEEEEechhhcCCCccceEEEEecCH
Confidence 5789999999999999998865543 55 9999999887543 23432 233 889999999999996 99998 77
Q ss_pred hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH---------hhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 343 DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK---------RQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 343 ~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~---------~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
++++++.. .. .....++|.+...++..+|+.-. +. .++.+.++.+++.+++++.|+++
T Consensus 235 ~l~~~l~~-------~~-----~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~ 301 (391)
T 3bwn_A 235 EVAKKMVE-------YI-----IVNSIGVSKESQVRTAKILNVLKETCKSESESEN-FFKYGREMMKNRWEKLREVVKES 301 (391)
T ss_dssp HHHHHHHH-------HH-----HHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTS-HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-------Hh-----cccccCCCHHHHHHHHHHHhCcchhccccccHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 88766532 00 01123556666667667776432 22 47888999999999999999987
Q ss_pred CCcc
Q psy8733 414 DKFY 417 (621)
Q Consensus 414 ~g~~ 417 (621)
+|+.
T Consensus 302 ~~~~ 305 (391)
T 3bwn_A 302 DAFT 305 (391)
T ss_dssp SSEE
T ss_pred CCcc
Confidence 6554
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.9e-09 Score=111.91 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=83.1
Q ss_pred CCCCceEEEEeccccccccc-cc---c-----ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVE-FN---Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~-~p---~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~ 333 (621)
+++++++|.++++.+.+|+. .+ + +++++|+++|+|.+++ ++- .++.++.+ |++.+ .|++| +
T Consensus 198 i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~diit~--sK~l~-~ 274 (420)
T 2pb2_A 198 MDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTS--AKALG-G 274 (420)
T ss_dssp CCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGG-T
T ss_pred hccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeEEe--ccccc-C
Confidence 44679999998887777863 22 1 4568999999999996 331 12222222 36644 59998 3
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.+++++++.+.+.+. ....++ ++|....+++.++|+.+.+ +.+.++.+++.+++++.|+
T Consensus 275 G~~iG~~~~~~~l~~~l~~~-----------~~~~t~-~~~~~~~aa~~a~L~~~~~----~~~~~~~~~~~~~l~~~L~ 338 (420)
T 2pb2_A 275 GFPVSAMLTTQEIASAFHVG-----------SHGSTY-GGNPLACAVAGAAFDIINT----PEVLQGIHTKRQQFVQHLQ 338 (420)
T ss_dssp TSCCEEEEECHHHHTTCC---------------CCEE-CCCHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEhHHHHHhhcCC-----------CcCccc-CcCHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHH
Confidence 5 99999999877654320 112233 4455666777788887754 4667788888889998887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 339 ~~ 340 (420)
T 2pb2_A 339 AI 340 (420)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-08 Score=106.41 Aligned_cols=125 Identities=17% Similarity=0.237 Sum_probs=82.2
Q ss_pred CCCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccC-C
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIG-P 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lG-P 332 (621)
+++++++|.+.++.+.+|...+ + +++++|+++|+|.+++ +|.. +...+.++ ++.+| |.+| .
T Consensus 176 l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G 253 (395)
T 3nx3_A 176 VNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSA--KALGCG 253 (395)
T ss_dssp CCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGTTT
T ss_pred ccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEec--ccccCC
Confidence 4567899999888888898876 2 4568899999999987 5432 23333333 55554 8885 4
Q ss_pred CccEEEEEchhH-HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 333 AGITVVIVREDL-LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 333 ~Glg~livr~~l-l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
.++|+++.++++ .+.+.+. ....++ +.|..+..+..++++.+.+. .+.++.+++.+++++.|.
T Consensus 254 ~~~G~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~aa~aal~~~~~~----~~~~~~~~~~~~~~~~l~ 317 (395)
T 3nx3_A 254 LSVGAFVINQKVASNSLEAG-----------DHGSTY-GGNPLVCAGVNAVFEIFKEE----KILENVNKLTPYLEQSLD 317 (395)
T ss_dssp SCCEEEEECHHHHHHHSCTT-----------CCSSCB-SCCHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEchhhhhhhcCCc-----------ccCCCC-CCCHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHH
Confidence 578999999998 7665321 011223 34556667777888887654 334455555566666665
Q ss_pred c
Q psy8733 412 N 412 (621)
Q Consensus 412 ~ 412 (621)
+
T Consensus 318 ~ 318 (395)
T 3nx3_A 318 E 318 (395)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.03 E-value=6.2e-08 Score=104.57 Aligned_cols=124 Identities=16% Similarity=0.252 Sum_probs=84.2
Q ss_pred CCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCCCc
Q psy8733 271 DPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGPAG 334 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP~G 334 (621)
++++++|.+.++.+.+|+..+ + +++++|+++|+|.+++ +|- ..+.++.+ |++.+ .|++| .|
T Consensus 210 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~--sK~l~-~G 286 (433)
T 1z7d_A 210 DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILL--GKALS-GG 286 (433)
T ss_dssp STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGG-TT
T ss_pred CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEEEE--Ccccc-CC
Confidence 457888888887777898752 2 4568999999999997 432 12222332 35544 49998 47
Q ss_pred ---cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 335 ---ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 335 ---lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+|+++.++++.+.+.+. ....++ +.|..+.++..++|+.+.+. .+.++.+++.+++++.|+
T Consensus 287 ~~~~G~v~~~~~~~~~l~~~-----------~~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~ 350 (433)
T 1z7d_A 287 HYPISAVLANDDIMLVIKPG-----------EHGSTY-GGNPLAASICVEALNVLINE----KLCENAEKLGGPFLENLK 350 (433)
T ss_dssp SSCCEEEEECHHHHTTCCTT-----------CCCCTT-TTCHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECHHHHhhhccc-----------cccccC-CCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHH
Confidence 99999999987654320 112334 44556677777889988764 356677788888888887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 351 ~l 352 (433)
T 1z7d_A 351 RE 352 (433)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.02 E-value=3.3e-09 Score=113.77 Aligned_cols=126 Identities=15% Similarity=0.143 Sum_probs=86.7
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCC-CcEEEecccccCC--CcccccccceEEeccccccC-CCcc--EEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQG-IPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAGI--TVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g-~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~Gl--g~l 338 (621)
+++++++|++++..|.+|...|+ +++++| +++|+|.+++.+. .|+++ ..++++.|.+|++| |.|+ |++
T Consensus 148 i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~-~~div~~S~sK~~~g~~~~~~G~v 226 (403)
T 3cog_A 148 ITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLAL-GADISMYSATKYMNGHSDVVMGLV 226 (403)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTT-TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred cCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcccc-CCeEEEEcChhhccCCCCCeEEEE
Confidence 45689999999999999999996 456889 9999999999885 56653 23599999999996 7774 999
Q ss_pred EEc-hhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 339 IVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 339 ivr-~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.+ +++.+++.+. .. ..-.+++.+..+++..+++++ +.+.++..+.+..+.+.+++.+
T Consensus 227 ~~~~~~l~~~l~~~-------~~-----~~g~~~~~~~~~~~~~~l~~l------~~r~~~~~~n~~~l~~~l~~~~ 285 (403)
T 3cog_A 227 SVNCESLHNRLRFL-------QN-----SLGAVPSPIDCYLCNRGLKTL------HVRMEKHFKNGMAVAQFLESNP 285 (403)
T ss_dssp EECCHHHHHHHHHH-------HH-----HHCCCCCHHHHHHHHHHHTTH------HHHHHHHHHHHHHHHHHHHTCT
T ss_pred EECcHHHHHHHHHH-------HH-----hcCCCCCHHHHHHHHhhhhHH------HHHHHHHHHHHHHHHHHHhcCC
Confidence 995 6776655320 00 011245555555555565544 3334445555666677776654
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.7e-09 Score=111.64 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=86.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCC--CcccccccceEEeccccccC-CCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLS--RKFDVSKFGVIIAGAQKNIG-PAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~--~pIDv~~~gvl~asaqK~lG-P~G--lg~li 339 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++.+. .|+++ ..|+++.|.+|++| |.+ .|+++
T Consensus 141 i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~-~~di~~~S~sK~~~~~~~~~~G~v~ 219 (389)
T 3acz_A 141 WKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLEL-GADIALHSVSKYINGHGDVIGGVSS 219 (389)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGT-TCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred cCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCcccc-CCeEEEECChhhccCCCCceeEEEE
Confidence 45689999999999999999996 4567899999999998766 56663 23589999999996 666 59999
Q ss_pred Ech-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 340 VRE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 340 vr~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
.++ ++++++.+.. . ..-.+++....+++..+++ .++...++..+.+..+.+.|++.+
T Consensus 220 ~~~~~~~~~l~~~~-------~-----~~g~~~~~~~~~~~~~~l~------~l~~r~~~~~~~~~~l~~~l~~~~ 277 (389)
T 3acz_A 220 AKTAEDIATIKFYR-------K-----DAGSLMAPMDAFLCARGMK------TLPIRMQIHMENGLKVAKFLEQHE 277 (389)
T ss_dssp ESSHHHHHHHHHHH-------H-----HHCCCCCHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ECcHHHHHHHHHHH-------H-----hcCCCCCHHHHHHHHcCcc------HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 998 8877653210 0 0012233333333333333 244455666667778888888765
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.3e-08 Score=103.05 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=57.4
Q ss_pred CCCceEEEEe-cccccccccccc--------cc-ccCCCcEEEecccccC---C----Ccccc-------cccc--eEEe
Q psy8733 271 DPEASYLYYC-DNETVDGVEFNY--------IP-DSQGIPLVSDMSSNFL---S----RKFDV-------SKFG--VIIA 324 (621)
Q Consensus 271 ~~~t~~V~~t-hnET~tGv~~p~--------i~-~~~g~llvvDavSs~G---~----~pIDv-------~~~g--vl~a 324 (621)
++++++|+++ +..|.||...+. ++ +++|+++|+|.+++.+ . .+.++ +..+ +++.
T Consensus 170 ~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 249 (423)
T 3ez1_A 170 DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFA 249 (423)
T ss_dssp CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEE
T ss_pred CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEe
Confidence 5689999755 667888998883 56 7899999999998832 1 12222 2334 7889
Q ss_pred ccccccC-CCccEEEEEchhHHhhh
Q psy8733 325 GAQKNIG-PAGITVVIVREDLLEYA 348 (621)
Q Consensus 325 saqK~lG-P~Glg~livr~~ll~~~ 348 (621)
|.+|+++ ..++|+++.++++++++
T Consensus 250 S~sK~~~~G~r~G~~~~~~~~~~~~ 274 (423)
T 3ez1_A 250 STSKITFAGAGLGFVASSEDNIRWL 274 (423)
T ss_dssp ESTTTSCSSSSCEEEEECHHHHHHH
T ss_pred CchhhccCCcceEEEEeCHHHHHHH
Confidence 9999764 56799999999988765
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-09 Score=113.57 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=56.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEeccc-ccCC--CcccccccceEEeccccccCCCc--cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSS-NFLS--RKFDVSKFGVIIAGAQKNIGPAG--ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavS-s~G~--~pIDv~~~gvl~asaqK~lGP~G--lg~li 339 (621)
+++++++|++++..|.+|...|+ +++++|+++|+|.++ ++|. .+++. ..|+++.|.+|++|.+| +|.++
T Consensus 141 i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~-~~Di~~~s~~K~l~~~g~~~G~~~ 219 (421)
T 2ctz_A 141 TDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAW-GAALVTHSLTKWVGGHGAVIAGAI 219 (421)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGG-TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred hccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCcccc-CCeEEEECCcccccCCCCcEEEEE
Confidence 45689999999999999999996 456889999999999 8875 33322 13599999999997544 68787
Q ss_pred Ec
Q psy8733 340 VR 341 (621)
Q Consensus 340 vr 341 (621)
++
T Consensus 220 ~~ 221 (421)
T 2ctz_A 220 VD 221 (421)
T ss_dssp EE
T ss_pred Ee
Confidence 75
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.3e-09 Score=113.33 Aligned_cols=129 Identities=12% Similarity=0.198 Sum_probs=84.9
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecc-cccCCCcccc-----cc----c-c-eEEeccccccC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMS-SNFLSRKFDV-----SK----F-G-VIIAGAQKNIG 331 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDav-Ss~G~~pIDv-----~~----~-g-vl~asaqK~lG 331 (621)
++++++.+++..|.||+..+. +++++|+++|+|.+ +.++..+++. .. . + +++.|.+|.+|
T Consensus 201 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 280 (448)
T 3meb_A 201 EKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFG 280 (448)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC
T ss_pred CCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCC
Confidence 457888888888999998873 34578999999998 4455444321 11 1 2 67899999999
Q ss_pred CCc--cEEE--EE--------c-h----hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH-----hh
Q psy8733 332 PAG--ITVV--IV--------R-E----DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK-----RQ 389 (621)
Q Consensus 332 P~G--lg~l--iv--------r-~----~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~-----~~ 389 (621)
++| +|.+ +. . + ++.+.+. .. ....+.+||..+..++..+|+... ..
T Consensus 281 ~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~----------~~--~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~ 348 (448)
T 3meb_A 281 LYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMT----------LQ--IRKTWSMSAIHGAYIVQVIVHDKRLLQMFYD 348 (448)
T ss_dssp CGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHH----------HH--HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred CccccceeeeeeeccccccccCCHHHHHHHHHHHH----------HH--HhcccCCccHHHHHHHHHHhcChHHHHHHHH
Confidence 888 7777 55 3 3 3332221 00 112344566666666666654211 01
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 390 GGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 390 gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
.++.+.++.+++.+++++.|.++
T Consensus 349 -~~~~~~~~~~~~r~~l~~~L~~~ 371 (448)
T 3meb_A 349 -NVKEMSARIHRMRSLLHASLAKR 371 (448)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhh
Confidence 36788899999999999999886
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-09 Score=115.61 Aligned_cols=128 Identities=10% Similarity=0.063 Sum_probs=86.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccccc--ceEEeccccccCCCc---cEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGPAG---ITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP~G---lg~li 339 (621)
+++++++|++++..|.+|...|+ +++++|+++|+|.+++.+.....+ ++ ++++.|.+|++|++| .|+++
T Consensus 163 i~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~-~~g~div~~S~sK~l~~~G~~~~G~vv 241 (414)
T 3ndn_A 163 LSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF-PLGVDVVVYSGTKHIDGQGRVLGGAIL 241 (414)
T ss_dssp TSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG-GGTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred cCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCeEeccCCccccCCCCceEEEEE
Confidence 55689999999999999999885 456899999999999866432222 33 489999999999988 79999
Q ss_pred EchhHHh-hhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLE-YALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~-~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+++.+. ++.. +.. ..-.+++....+.+...+++ ++.+.+++.+.++.+.+.|++.+++
T Consensus 242 ~~~~~~~~~l~~-------~~~-----~~g~~~~~~~a~~~~~~l~~------l~~r~~~~~~~a~~l~~~L~~~p~v 301 (414)
T 3ndn_A 242 GDREYIDGPVQK-------LMR-----HTGPAMSAFNAWVLLKGLET------LAIRVQHSNASAQRIAEFLNGHPSV 301 (414)
T ss_dssp ECHHHHTTHHHH-------HHH-----HHCCCCCHHHHHHHHHHGGG------HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred ECHHHHHHHHHH-------HHH-----HcCCCCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 9988765 2211 000 01122333333333334443 3445566677778888888887643
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.8e-09 Score=113.97 Aligned_cols=128 Identities=11% Similarity=0.073 Sum_probs=81.0
Q ss_pred CceEEEEecccccc-cccccc--------ccccCCCcEEEeccccc-----------CCCccccc--------ccceEEe
Q psy8733 273 EASYLYYCDNETVD-GVEFNY--------IPDSQGIPLVSDMSSNF-----------LSRKFDVS--------KFGVIIA 324 (621)
Q Consensus 273 ~t~~V~~thnET~t-Gv~~p~--------i~~~~g~llvvDavSs~-----------G~~pIDv~--------~~gvl~a 324 (621)
++++|.+++..+.+ |...+. +++++|+++|+|+++.+ +...+++. ..|+++.
T Consensus 183 ~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 262 (467)
T 1ax4_A 183 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTM 262 (467)
T ss_dssp GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEE
T ss_pred CeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEE
Confidence 68999998888888 776652 45689999999998776 33444432 2457889
Q ss_pred ccccccCCC-ccEEEEEc-h-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy8733 325 GAQKNIGPA-GITVVIVR-E-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 401 (621)
Q Consensus 325 saqK~lGP~-Glg~livr-~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~ 401 (621)
|.||++|++ | |+++.+ + ++.+++....+.+ .....+++.+...+.++..+++.+.+ +...++..+
T Consensus 263 s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~ 330 (467)
T 1ax4_A 263 SAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPM-------EGFVTYGGLAGRDMAAMVQGLEEGTE----EEYLHYRIG 330 (467)
T ss_dssp ETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHH-------TCSTTTTTCCHHHHHHHHHHHHHTTC----HHHHHHHHH
T ss_pred eccccCCCCcc-eEEEeCCHHHHHHHHHhhcccc-------ccccccCCccchHHHHHHHHHHHhhh----hhHHHHHHH
Confidence 999999855 6 777777 5 6766543211100 11234556666666666666654322 122223345
Q ss_pred HHHHHHHHHHc
Q psy8733 402 KSVLLYQEIDN 412 (621)
Q Consensus 402 la~~L~e~L~~ 412 (621)
+.+++++.|.+
T Consensus 331 ~~~~l~~~L~~ 341 (467)
T 1ax4_A 331 QVKYLGDRLRE 341 (467)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66788888877
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-08 Score=108.48 Aligned_cols=123 Identities=17% Similarity=0.196 Sum_probs=81.3
Q ss_pred CCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccCCCc
Q psy8733 271 DPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIGPAG 334 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lGP~G 334 (621)
.+++++|.+..+.+.+|...+ + +++++|+++|+|-+++ +|- .+..++.++ ++ +..|.+|+ |
T Consensus 199 ~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G 275 (439)
T 3dxv_A 199 AGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-G 275 (439)
T ss_dssp TTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-T
T ss_pred CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-C
Confidence 456889999888888899877 3 4568999999999986 321 122333332 55 44599974 5
Q ss_pred --cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 --ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 --lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|+++.++++.+.+.+. ....++ ++.....+..++++.+.+. .+.++.+++.+++++.|.+
T Consensus 276 ~riG~~~~~~~~~~~~~~~-----------~~~~t~--~~~~~~~aa~aal~~~~~~----~~~~~~~~~~~~~~~~l~~ 338 (439)
T 3dxv_A 276 LPLSAVIAPAEILDCASAF-----------AMQTLH--GNPISAAAGLAVLETIDRD----DLPAMAERKGRLLRDGLSE 338 (439)
T ss_dssp SCCEEEEEEHHHHTSCSSS-----------SCCTTT--TCHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEECHHHHhhhcCC-----------CcCCCc--ccHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHH
Confidence 79999999988654321 112334 4556667777788887664 3455566666667776665
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 339 ~ 339 (439)
T 3dxv_A 339 L 339 (439)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-08 Score=105.75 Aligned_cols=262 Identities=12% Similarity=0.043 Sum_probs=144.2
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCC------CCCEEEEE-cCCc
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP------NNYKILFL-QGGG 124 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p------~~yeI~f~-~ggg 124 (621)
.|++.++|.++.++|.+++.+...+....+ -.+. .-..+.|+.++++++.. .+ +|+|+ ++||
T Consensus 37 ~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~-----Y~~~-----~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~v~t~G~ 105 (401)
T 7aat_A 37 AYRDDNGKPYVLNCVRKAEAMIAAKKMDKE-----YLPI-----AGLADFTRASAELALGENSEAFKSG-RYVTVQGISG 105 (401)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHTTCCCC-----CCCT-----TCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEEEHH
T ss_pred eEECCCCCEechHHHHHHHHHhcccccccC-----CCCC-----CCCHHHHHHHHHHhcCCCccccccC-ceEEEecCcc
Confidence 466788888888999999988764322111 1111 01456777777777642 22 68762 3678
Q ss_pred chhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccc
Q psy8733 125 TGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSK 204 (621)
Q Consensus 125 T~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~ 204 (621)
|+ +++++... +..+.++||++.+..+++.+. ...++..|...+..+..
T Consensus 106 ~~-----al~~~~~~-----------------------l~~~~~~gd~Vlv~~p~~~~~--~~~~~~~g~~~~~~~~~-- 153 (401)
T 7aat_A 106 TG-----SLRVGANF-----------------------LQRFFKFSRDVYLPKPSWGNH--TPIFRDAGLQLQAYRYY-- 153 (401)
T ss_dssp HH-----HHHHHHHH-----------------------HHHHCTTCCEEEEEESCCTTH--HHHHHHTTCEEEEEECE--
T ss_pred hH-----HHHHHHHH-----------------------HHHhccCCCEEEEcCCCchhH--HHHHHHcCCeeEeeeee--
Confidence 88 56553221 122335566666655554443 34456667543222210
Q ss_pred ccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc-CCCCCceEEEEeccc
Q psy8733 205 YVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW-NRDPEASYLYYCDNE 283 (621)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l-~i~~~t~~V~~thnE 283 (621)
. ...|+ ++.+.+ .+.+ ++.+++++|.+++..
T Consensus 154 -------~-------------------~~~~~--~d~~~l--------------------~~~l~~~~~~~~~v~i~~p~ 185 (401)
T 7aat_A 154 -------D-------------------PKTCS--LDFTGA--------------------MEDISKIPEKSIILLHACAH 185 (401)
T ss_dssp -------E-------------------TTTTE--ECHHHH--------------------HHHHTTSCTTCEEEEESSSC
T ss_pred -------c-------------------cccCc--cCHHHH--------------------HHHHHhCCCCcEEEEeCCCC
Confidence 0 00011 111110 0011 235678999999999
Q ss_pred ccccccccc--------ccccCCCcEEEecc-cccCCCccc-----c----cccc--eEEeccccccCCCc--cEEEEE-
Q psy8733 284 TVDGVEFNY--------IPDSQGIPLVSDMS-SNFLSRKFD-----V----SKFG--VIIAGAQKNIGPAG--ITVVIV- 340 (621)
Q Consensus 284 T~tGv~~p~--------i~~~~g~llvvDav-Ss~G~~pID-----v----~~~g--vl~asaqK~lGP~G--lg~liv- 340 (621)
|.||...+. +++++|+++|+|-+ +.++..+.+ + +..+ +++.|.+|.+|++| +|++++
T Consensus 186 NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~ 265 (401)
T 7aat_A 186 NPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVI 265 (401)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEE
Confidence 999988773 34678999999987 444433221 1 1222 78899999999999 798887
Q ss_pred --chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH--H----HhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 341 --REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW--I----KRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 341 --r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~--i----~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+++..+.+.. . ... . .......++.....++..+++- + .+ -++.+.++.+++.+++++.|.+
T Consensus 266 ~~~~~~~~~~~~---~---~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~ 335 (401)
T 7aat_A 266 CRDAEEAKRVES---Q---LKI-L-IRPMYSNPPMNGARIASLILNTPELRKEWLV--EVKGMADRIISMRTQLVSNLKK 335 (401)
T ss_dssp CSSHHHHHHHHH---H---HHH-H-HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHH---H---HHH-H-HHhccCCCChHHHHHHHHHhCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 4443222110 0 000 0 0111223333333333333310 0 12 2677788888899999999987
Q ss_pred cC
Q psy8733 413 SD 414 (621)
Q Consensus 413 ~~ 414 (621)
++
T Consensus 336 ~~ 337 (401)
T 7aat_A 336 EG 337 (401)
T ss_dssp TT
T ss_pred cC
Confidence 63
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-08 Score=106.18 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=81.9
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Cccccccc----ceEEeccccccCC-Cc
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKF----GVIIAGAQKNIGP-AG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~----gvl~asaqK~lGP-~G 334 (621)
+++++|.+..+.+.+|+..+ + +++++|+++|+|-+++ +|- ....++.+ +++.+| |.+|+ -.
T Consensus 202 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~s--K~~~~G~~ 279 (433)
T 1zod_A 202 GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLS--KTLGAGLP 279 (433)
T ss_dssp SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSS
T ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEec--ccccCCCC
Confidence 45777777666566897655 2 3567899999999998 652 22222222 255444 99974 34
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|+++.++++.+.+.+. . .....+++ .|..+..+..++++.+.+. + +.++.+++.+++++.|+++
T Consensus 280 ig~~~~~~~~~~~~~~~--~-------~~~~~t~~-~~~~~~~a~~aal~~~~~~-~---~~~~~~~~~~~l~~~l~~l 344 (433)
T 1zod_A 280 LAAIVTSAAIEERAHEL--G-------YLFYTTHV-SDPLPAAVGLRVLDVVQRD-G---LVARANVMGDRLRRGLLDL 344 (433)
T ss_dssp CEEEEECHHHHHHHHHT--T-------CCCCCTTT-TCHHHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEhHHHHHhhccC--C-------CCCCCCCC-cCHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHH
Confidence 89999999988765321 0 00113333 4556667778899988775 4 4566777788888888764
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-08 Score=109.98 Aligned_cols=133 Identities=10% Similarity=0.109 Sum_probs=77.3
Q ss_pred CCceEEEEecccccc-cccccc--------ccccCCCcEEEeccccc-----------CCCcccc--------cccceEE
Q psy8733 272 PEASYLYYCDNETVD-GVEFNY--------IPDSQGIPLVSDMSSNF-----------LSRKFDV--------SKFGVII 323 (621)
Q Consensus 272 ~~t~~V~~thnET~t-Gv~~p~--------i~~~~g~llvvDavSs~-----------G~~pIDv--------~~~gvl~ 323 (621)
+++++|.+++..+.+ |...+. +++++|+++|+|++|++ +...+++ +..|+++
T Consensus 182 ~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~ 261 (467)
T 2oqx_A 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLA 261 (467)
T ss_dssp GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEE
T ss_pred CceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEE
Confidence 368899998777776 776552 45689999999988866 2222322 2345778
Q ss_pred eccccccCCC-ccEEEEEchh-HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy8733 324 AGAQKNIGPA-GITVVIVRED-LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 401 (621)
Q Consensus 324 asaqK~lGP~-Glg~livr~~-ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~ 401 (621)
+|.||++|++ | |+++.+++ +++.+....+ +.++. .....+++.+..++.++..+++...+ +...++..+
T Consensus 262 ~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~al~~~l~~~~~----~~~~~~~~~ 332 (467)
T 2oqx_A 262 MSAKKDAMVPMG-GLLCMKDDSFFDVYTECRT-LCVVQ---EGFPTYGGLEGGAMERLAVGLYDGMN----LDWLAYRIA 332 (467)
T ss_dssp EESSSTTCCSSC-EEEEECSGGGHHHHHHHHH-HHHHT---TSSCCCCCCCHHHHHHHHHHHHHTTC----HHHHHHHHH
T ss_pred EecccccCCCCc-eEEEecChhHHHHHHHHHH-hhhcc---CCcccccchhhhHHHHHHHhhHhhhh----HHHHHHHHH
Confidence 9999999844 6 77777766 3332211001 10000 01123455555555555544332111 123344567
Q ss_pred HHHHHHHHHHcc
Q psy8733 402 KSVLLYQEIDNS 413 (621)
Q Consensus 402 la~~L~e~L~~~ 413 (621)
+++++++.|.++
T Consensus 333 ~~~~l~~~L~~~ 344 (467)
T 2oqx_A 333 QVQYLVDGLEEI 344 (467)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 788888988876
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=110.95 Aligned_cols=132 Identities=12% Similarity=0.053 Sum_probs=86.8
Q ss_pred CCceEEEEec----ccccccccccc-----cccc--CCCcEEEecccccCCCccccccc--ceEEeccccccCC---Ccc
Q psy8733 272 PEASYLYYCD----NETVDGVEFNY-----IPDS--QGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIGP---AGI 335 (621)
Q Consensus 272 ~~t~~V~~th----nET~tGv~~p~-----i~~~--~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lGP---~Gl 335 (621)
+++++|++++ ..+.+|.+.|+ ++++ +|+++++|.+.+.+....+.-.+ |+++.|.||++|+ +..
T Consensus 175 ~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~g 254 (427)
T 3i16_A 175 ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTG 254 (427)
T ss_dssp TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSC
T ss_pred CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceE
Confidence 6899999998 77888998885 4567 89999999999877633332233 5999999999986 445
Q ss_pred EEEEEchhHHhhhCC--CCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALP--ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~--~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|+++.++++++++.. ..+.+ +.. -.|.....+. +++-+.. +..+.++..+.+.++.+.|+++
T Consensus 255 G~i~~~~~li~~l~~~~~~~~~---------g~~-~~~~~~~a~~---~l~gl~~---~~~r~~~~~~~a~~la~~L~~~ 318 (427)
T 3i16_A 255 GYLAGTKDCIEKTSYRLTVPGI---------GGE-CGSTFGVVRS---MYQGLFL---APHISMEALKGAILCSRIMELA 318 (427)
T ss_dssp EEEEECHHHHHHHHHHHSCTTT---------GGG-CCCCTTCHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHHHHHHHhcccCcc---------Ccc-CCccHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999887643 11110 000 0110111122 2222222 3456677778888999999988
Q ss_pred CCcccCc
Q psy8733 414 DKFYECP 420 (621)
Q Consensus 414 ~g~~~~~ 420 (621)
+ +.+.|
T Consensus 319 g-~~V~p 324 (427)
T 3i16_A 319 G-FEVMP 324 (427)
T ss_dssp T-CEEES
T ss_pred C-CeecC
Confidence 6 54443
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.1e-08 Score=103.04 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=57.7
Q ss_pred CCCceEEEEe-cccccccccccc--------cc-ccCCCcEEEeccccc---CC---Cccccc-------ccc--eEEec
Q psy8733 271 DPEASYLYYC-DNETVDGVEFNY--------IP-DSQGIPLVSDMSSNF---LS---RKFDVS-------KFG--VIIAG 325 (621)
Q Consensus 271 ~~~t~~V~~t-hnET~tGv~~p~--------i~-~~~g~llvvDavSs~---G~---~pIDv~-------~~g--vl~as 325 (621)
.+++++|+++ +..|.||...+. ++ +++|+++|+|.+++. +. .++++. ..+ +++.|
T Consensus 178 ~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 257 (427)
T 3ppl_A 178 NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTS 257 (427)
T ss_dssp STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEE
T ss_pred cCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEec
Confidence 3678988866 667888999874 56 789999999999985 22 123332 233 77889
Q ss_pred cccccC-CCccEEEEEchhHHhhh
Q psy8733 326 AQKNIG-PAGITVVIVREDLLEYA 348 (621)
Q Consensus 326 aqK~lG-P~Glg~livr~~ll~~~ 348 (621)
.+|+++ .-++|+++.++++++.+
T Consensus 258 ~SK~~~~G~r~G~~~~~~~l~~~~ 281 (427)
T 3ppl_A 258 TSKITLAGAGVSFFLTSAENRKWY 281 (427)
T ss_dssp STTTSCTTSSCEEEECCHHHHHHH
T ss_pred hhhccCcCccEEEEEcCHHHHHHH
Confidence 999965 45789999999887765
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.3e-08 Score=105.88 Aligned_cols=130 Identities=13% Similarity=0.050 Sum_probs=89.7
Q ss_pred CceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC-----cccccc------------cc-eEEecc
Q psy8733 273 EASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR-----KFDVSK------------FG-VIIAGA 326 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~-----pIDv~~------------~g-vl~asa 326 (621)
++++|++++-.|.||...+. +++++++++|+|-+.+.+.. ...+.. .. +++.|.
T Consensus 235 ~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~ 314 (498)
T 3ihj_A 235 DPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHST 314 (498)
T ss_dssp EEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEES
T ss_pred CCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEecc
Confidence 58999999999999999873 34578999999998875332 222222 12 567788
Q ss_pred cccc-CCCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH-----------HHHhh
Q psy8733 327 QKNI-GPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-----------WIKRQ 389 (621)
Q Consensus 327 qK~l-GP~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~-----------~i~~~ 389 (621)
.|.+ |.+| +|++++ ++++.+.+.. . .+...++++....++..+++ |+.+
T Consensus 315 SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~-------~------~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~- 380 (498)
T 3ihj_A 315 SKGYMGECGYRGGYMEVINLHPEIKGQLVK-------L------LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSRE- 380 (498)
T ss_dssp SSSTTCCSSSCCEEEEEESCCHHHHHHHHH-------H------HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHH-
T ss_pred ccccccCcccceEEEEEecCCHHHHHHHHH-------H------HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHH-
Confidence 9999 8777 566663 6777665421 0 11234566677777777663 4433
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHccCCccc
Q psy8733 390 GGLAKMEQNSLQKSVLLYQEIDNSDKFYE 418 (621)
Q Consensus 390 gGl~~i~~r~~~la~~L~e~L~~~~g~~~ 418 (621)
++.+.++.+++++++++.|.+++|+..
T Consensus 381 --~~~~~~~l~~~~~~l~~~L~~~~g~~~ 407 (498)
T 3ihj_A 381 --KESVLGNLAKKAKLTEDLFNQVPGIHC 407 (498)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCcEe
Confidence 467778888999999999998876644
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.88 E-value=7e-09 Score=112.80 Aligned_cols=133 Identities=8% Similarity=0.093 Sum_probs=85.2
Q ss_pred CCCCceEEEEec----ccccccccccc-----cccc--CCCcEEEecccccCCCccccccc--ceEEeccccccC----C
Q psy8733 270 RDPEASYLYYCD----NETVDGVEFNY-----IPDS--QGIPLVSDMSSNFLSRKFDVSKF--GVIIAGAQKNIG----P 332 (621)
Q Consensus 270 i~~~t~~V~~th----nET~tGv~~p~-----i~~~--~g~llvvDavSs~G~~pIDv~~~--gvl~asaqK~lG----P 332 (621)
+++++++|++++ ..+.+|...++ ++++ +|+++++|.+++.+....+...+ |+++.|.+|++| |
T Consensus 162 l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~ 241 (431)
T 3ht4_A 162 IHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVK 241 (431)
T ss_dssp CCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCS
T ss_pred cCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCC
Confidence 567899999986 33444555554 4567 89999999999988754444444 499999999963 7
Q ss_pred CccEEEEEchhHHhhhCC--CCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 333 AGITVVIVREDLLEYALP--ITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~--~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+| |+++.++++++++.. ..+.+ +...+ |+.. .+.+...++. ++.+.++..+.+.++.+.
T Consensus 242 ~G-G~v~~~~~li~~l~~~~~~~~~---------g~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~~a~~l~~~ 303 (431)
T 3ht4_A 242 TG-GYIVGKEQYVEACAYRLTSPGI---------GAEAGASLYS--LQEMYQGFFL------APHVAGQALKGAIFTAAF 303 (431)
T ss_dssp SC-EEEEECHHHHHHHHHHHSCTTT---------TTSCSCCCSC--SHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred ce-EEEEecHHHHHHHHHHhccCCc---------ccccCccHHH--HHHHHhHhhh------HHHHHHHHHHHHHHHHHH
Confidence 88 999999999887643 11110 01111 1211 1122233333 345567778888899999
Q ss_pred HHccCCcccCcc
Q psy8733 410 IDNSDKFYECPV 421 (621)
Q Consensus 410 L~~~~g~~~~~~ 421 (621)
|++++ +.+.|.
T Consensus 304 L~~~g-~~v~p~ 314 (431)
T 3ht4_A 304 LEKLG-MNTSPA 314 (431)
T ss_dssp HHHHT-CCEESC
T ss_pred HHhCc-CEecCC
Confidence 99886 554443
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.9e-08 Score=106.22 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=87.7
Q ss_pred CCCCceEEEEecccccccccccc--------ccc-cCCCcEEEecccccCCC-cccccc--cc--eEEeccccccCCCc-
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPD-SQGIPLVSDMSSNFLSR-KFDVSK--FG--VIIAGAQKNIGPAG- 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~-~~g~llvvDavSs~G~~-pIDv~~--~g--vl~asaqK~lGP~G- 334 (621)
+++++++|++++..+.+|+..+. +++ .+++++|+|.+.+-... +..+.. .+ +++.|..|.+|++|
T Consensus 241 l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 320 (533)
T 3f6t_A 241 KDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW 320 (533)
T ss_dssp SCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG
T ss_pred hCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCccc
Confidence 56789999999999999999874 234 67999999999763221 222211 12 88899999999999
Q ss_pred -cEEEEEchh-----HHhhhCC--------------CCCceeeccc------cccCCCccCCchHHHHHHHHH-HHHHHH
Q psy8733 335 -ITVVIVRED-----LLEYALP--------------ITPTVFHFKI------NADNNSVYNTPPTFVVHVIQR-VFAWIK 387 (621)
Q Consensus 335 -lg~livr~~-----ll~~~~~--------------~~P~~ld~~~------~~~~~s~~~TP~v~~I~aL~~-aL~~i~ 387 (621)
+|+++.+++ +++.+.+ ..|.-+.+.. .........+++.....++.. ++..+.
T Consensus 321 RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 321 RLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 899999887 5443311 1111000000 001122233555555555332 444453
Q ss_pred -----hh--CCHHHHHHHHHHHHHHHHHHHH
Q psy8733 388 -----RQ--GGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 388 -----~~--gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+. .-++.+.++.+++.+.+++.|.
T Consensus 401 ~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~ 431 (533)
T 3f6t_A 401 TSTNGGSDDPYIDIARKLVSERYDQLHDAMQ 431 (533)
T ss_dssp TCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 0267778888888888988886
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-08 Score=110.18 Aligned_cols=130 Identities=12% Similarity=0.055 Sum_probs=85.7
Q ss_pred CCceEEEEec----ccccccccccc-----cccc--CCCcEEEecccccCC---CcccccccceEEeccccccCC---Cc
Q psy8733 272 PEASYLYYCD----NETVDGVEFNY-----IPDS--QGIPLVSDMSSNFLS---RKFDVSKFGVIIAGAQKNIGP---AG 334 (621)
Q Consensus 272 ~~t~~V~~th----nET~tGv~~p~-----i~~~--~g~llvvDavSs~G~---~pIDv~~~gvl~asaqK~lGP---~G 334 (621)
+++++|++++ ..+.+|...|+ ++++ +|+++++|.+.+.+. .|++. ..|+++.|.||++|+ +.
T Consensus 175 ~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~-gaDiv~~S~sK~lgg~g~~~ 253 (427)
T 3hvy_A 175 DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDV-GADIIAGSLIKNIGGGIATT 253 (427)
T ss_dssp TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGG-TCSEEEEETTSGGGTTTCCS
T ss_pred CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCccc-CCeEEEECCcccccccccce
Confidence 6899999999 77888988885 4566 899999999988776 33332 135999999999975 33
Q ss_pred cEEEEEchhHHhhhCC--CCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 335 ITVVIVREDLLEYALP--ITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 335 lg~livr~~ll~~~~~--~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
.|+++.++++++++.. ..+.+ +...+ ++. ..+.+...++. ++.+.++..+.+.++.+.|+
T Consensus 254 GG~i~~~~~li~~l~~~~~~~~~---------g~~~~~~~~--~a~~~~~gl~~------~~~r~~~~~~~a~~la~~L~ 316 (427)
T 3hvy_A 254 GGYIAGKEEYVTQATFRVTVPGI---------GGECGSTFG--VMRSLYEGLFM------APHVTIEAVKGAVFCARIME 316 (427)
T ss_dssp CEEEEECHHHHHHHHHHHSCTTT---------GGGCCCCTT--CHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHhhcCCc---------ccccCCCHH--HHHHHHHhHhH------HHHHHHHHHHHHHHHHHHHH
Confidence 4999999999887643 11110 00111 121 11222222222 34566777888889999999
Q ss_pred ccCCcccCc
Q psy8733 412 NSDKFYECP 420 (621)
Q Consensus 412 ~~~g~~~~~ 420 (621)
+.+ +.+.|
T Consensus 317 ~~g-~~V~p 324 (427)
T 3hvy_A 317 LAG-FDVLP 324 (427)
T ss_dssp HTT-CEEES
T ss_pred hCC-CeecC
Confidence 886 54443
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.86 E-value=3e-08 Score=107.81 Aligned_cols=139 Identities=13% Similarity=0.062 Sum_probs=84.4
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCc--cEEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAG--ITVVIV 340 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~G--lg~liv 340 (621)
+++++++|++++..|.+|...|+ +++++|+++|+|.+++.+.. .+..++| +++.|.+|++|++| +|.+++
T Consensus 164 i~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-~~~~~~g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 164 CDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-LEAKRLGVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-CCGGGGTCSEEEEECCCEEETTEEECCEEEE
T ss_pred hCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChHHcCCEEEEECCcccccCCCCceEEEEE
Confidence 56789999999999999999986 45689999999999988765 4444554 99999999998664 666666
Q ss_pred --chhHHhhhCCCCCc---------eeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 341 --REDLLEYALPITPT---------VFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 341 --r~~ll~~~~~~~P~---------~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+..|... ...+. +............-.+++....+.+...++.+ ..+.+++.+.+..+.+.
T Consensus 243 ~~~~~~~~~~-~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l------~~r~~~~~~na~~la~~ 315 (430)
T 3ri6_A 243 DHGLFEWKSL-PSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETM------ALRIERSCQNAQELAHW 315 (430)
T ss_dssp ECSCSCGGGS-TTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred ECChHHhhhc-cchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHH
Confidence 33223110 00000 00000000000111233334444333444444 34455667788888898
Q ss_pred HHccCCc
Q psy8733 410 IDNSDKF 416 (621)
Q Consensus 410 L~~~~g~ 416 (621)
|++.+++
T Consensus 316 L~~~p~v 322 (430)
T 3ri6_A 316 LLSIPQV 322 (430)
T ss_dssp HTTCTTC
T ss_pred HhCCCCc
Confidence 8887644
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.6e-09 Score=109.73 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=81.0
Q ss_pred CCCceEEEEecccccc-cccccc--------ccccCCCcEEEecccccCC------Cccccc-ccceEEeccccccC-CC
Q psy8733 271 DPEASYLYYCDNETVD-GVEFNY--------IPDSQGIPLVSDMSSNFLS------RKFDVS-KFGVIIAGAQKNIG-PA 333 (621)
Q Consensus 271 ~~~t~~V~~thnET~t-Gv~~p~--------i~~~~g~llvvDavSs~G~------~pIDv~-~~gvl~asaqK~lG-P~ 333 (621)
.+++++|++++..+.+ |...|. +++++|+++|+|.++..+. .+.++. ..|+++.|.+|++| |.
T Consensus 135 ~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~ 214 (359)
T 3pj0_A 135 REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIA 214 (359)
T ss_dssp SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSS
T ss_pred cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcc
Confidence 5678999998776665 787773 3457899999998876543 222222 23577889999996 76
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
| |+++.++++++++... .. ..+....+.+.....++ .+++.. ++. .++..++++++++.|+++
T Consensus 215 g-g~~~~~~~l~~~~~~~-------~~--~~~~~~~~~~~~~~a~~-~~l~~~-----~~~-~~~~~~~~~~l~~~L~~~ 277 (359)
T 3pj0_A 215 G-AILAGNDDFVQEAKIW-------KR--RYGGDLISLYPYILSAD-YYFEKR-----IGK-MAEYFEAAKGLAERFNSC 277 (359)
T ss_dssp C-EEEEECHHHHHHHHHH-------HH--HTTCCCSCCHHHHHHHH-HHHHHH-----GGG-HHHHHHHHHHHHHHHHTS
T ss_pred e-EEEECCHHHHHHHHHH-------HH--HhCCCcchhHHHHHHHH-HHHHHH-----HHH-hHHHHHHHHHHHHHHhhC
Confidence 6 8999999988765320 00 00111222333333222 233322 222 334567778899999998
Q ss_pred CCccc
Q psy8733 414 DKFYE 418 (621)
Q Consensus 414 ~g~~~ 418 (621)
+|+..
T Consensus 278 ~g~~~ 282 (359)
T 3pj0_A 278 SGVKT 282 (359)
T ss_dssp TTEEE
T ss_pred CCcee
Confidence 76654
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.4e-08 Score=109.49 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=63.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC--cccccccceEEeccccccC-CCcc--EEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR--KFDVSKFGVIIAGAQKNIG-PAGI--TVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~--pIDv~~~gvl~asaqK~lG-P~Gl--g~li 339 (621)
+++++++|.+++..|.+|...|+ +++++|+++|+|.+++.|.. |+++ ..++++.|.+|++| |.|+ |+++
T Consensus 214 i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~~-~~div~~S~sK~~~g~~Gl~~G~l~ 292 (464)
T 1ibj_A 214 IGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLEL-GADIVMHSATKFIAGHSDVMAGVLA 292 (464)
T ss_dssp CCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGT-TCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred hccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhhc-CCEEEEECCcccccCCCCCcEEEEE
Confidence 45789999999999999999986 45689999999999988765 5553 23599999999995 8897 9999
Q ss_pred Ech-hHHhhh
Q psy8733 340 VRE-DLLEYA 348 (621)
Q Consensus 340 vr~-~ll~~~ 348 (621)
+++ ++.+++
T Consensus 293 ~~~~~l~~~l 302 (464)
T 1ibj_A 293 VKGEKLAKEV 302 (464)
T ss_dssp ECSHHHHHHH
T ss_pred EChHHHHHHH
Confidence 995 666654
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-07 Score=98.82 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=78.1
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccC-C-Cc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIG-P-AG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lG-P-~G 334 (621)
++++|.+..+.+.+|+..+ + +++++|+++|+|-+++ +|.. ...++.+ +++.+| |.+| + -+
T Consensus 212 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~r 289 (419)
T 2eo5_A 212 EVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLA--KALGGGIMP 289 (419)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSC
T ss_pred CEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEec--ccccCCccc
Confidence 5677777776666897655 2 3467899999999998 6532 1122222 266555 9996 3 66
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++. .+ . . ....+ .+.|..++.++.++|+.+.+ +.++.+++.+++++.|.++
T Consensus 290 iG~~~~~~~~~-~~-~---~--------~~~~t-~~~n~~~~~aa~aal~~~~~------~~~~~~~~~~~l~~~L~~~ 348 (419)
T 2eo5_A 290 IGATIFRKDLD-FK-P---G--------MHSNT-FGGNALACAIGSKVIDIVKD------LLPHVNEIGKIFAEELQGL 348 (419)
T ss_dssp CEEEEEEGGGC-CC------------------C-CCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEEchHhh-cC-C---c--------ccCCC-CCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 89999998864 32 1 0 01122 34466778888888887643 6677788888898888764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-07 Score=102.87 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=84.7
Q ss_pred CCCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCCCc
Q psy8733 271 DPEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGPAG 334 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP~G 334 (621)
.+++++|.+.++.+.+|+..+ + +++++|+++|+|.+|+ +|-. ...++.+ +++.+| |++ |
T Consensus 229 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l-~-- 303 (449)
T 2cjg_A 229 PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFG--KKT-Q-- 303 (449)
T ss_dssp TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGG-S--
T ss_pred CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEec--Ccc-c--
Confidence 357888888887777897655 2 4568999999999999 5422 1122222 366555 999 4
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.++.++++.+.+.+. ++. . ....+++ ++|..+.++..++|+.+.+. .+.++.+++.+++++.|+++
T Consensus 304 iG~~~~~~~~~~~l~~~---~~~--~-~~~~~t~-~~n~~~~~aa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~l 371 (449)
T 2cjg_A 304 VCGVMAGRRVDEVADNV---FAV--P-SRLNSTW-GGNLTDMVRARRILEVIEAE----GLFERAVQHGKYLRARLDEL 371 (449)
T ss_dssp SEEEEECGGGGGSTTCT---TTS--T-TSSCCSS-SSCHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECHHHhhhhhhc---ccC--C-cccccCC-CCCHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHH
Confidence 88999999887754321 100 0 0112233 45666778888999988764 35577788888888888764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.8e-07 Score=96.04 Aligned_cols=125 Identities=12% Similarity=0.124 Sum_probs=78.0
Q ss_pred CceEEE-Eecccccccccccc--------ccc-cCCCcEEEecccc---cCCC-----cc-cc----cccc--eEEeccc
Q psy8733 273 EASYLY-YCDNETVDGVEFNY--------IPD-SQGIPLVSDMSSN---FLSR-----KF-DV----SKFG--VIIAGAQ 327 (621)
Q Consensus 273 ~t~~V~-~thnET~tGv~~p~--------i~~-~~g~llvvDavSs---~G~~-----pI-Dv----~~~g--vl~asaq 327 (621)
++++|+ +++..|.||...+. +++ ++|+++|+|.+++ +... ++ ++ +..+ +++.|..
T Consensus 178 ~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 257 (422)
T 3d6k_A 178 QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTS 257 (422)
T ss_dssp TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEEST
T ss_pred CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChh
Confidence 688888 67778899999873 456 7899999999997 3211 22 21 2334 7788889
Q ss_pred cccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHH
Q psy8733 328 KNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW---IKRQGGLAKMEQNSLQK 402 (621)
Q Consensus 328 K~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~---i~~~gGl~~i~~r~~~l 402 (621)
|+++| | +|+++.++++++++... . .....++|.....++.++|+. +.+. ++.+.++.+++
T Consensus 258 K~~~~-GlriG~~~~~~~l~~~l~~~-------~-----~~~~~~~~~~~q~a~~~~l~~~~~~~~~--~~~~~~~~~~~ 322 (422)
T 3d6k_A 258 KITHA-GSGVSFFASSKENIEWYASH-------A-----NVRGIGPNKLNQLAHAQFFGDVAGLKAH--MLKHAASLAPK 322 (422)
T ss_dssp TTSCT-TSSCEEEECCHHHHHHHHHH-------H-----HHHCSCCCHHHHHHHHHHHCSHHHHHHH--HHHHHHHHHHH
T ss_pred hhcCc-ccceEEEEeCHHHHHHHHHH-------H-----HhhcCCCCHHHHHHHHHHHhCcchHHHH--HHHHHHHHHHH
Confidence 99444 6 89999999988765320 0 011134455555555555532 1111 44555555556
Q ss_pred HHHHHHHHHc
Q psy8733 403 SVLLYQEIDN 412 (621)
Q Consensus 403 a~~L~e~L~~ 412 (621)
.+.+++.|.+
T Consensus 323 ~~~l~~~L~~ 332 (422)
T 3d6k_A 323 FERVLEILDS 332 (422)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.2e-08 Score=100.39 Aligned_cols=129 Identities=15% Similarity=0.116 Sum_probs=80.8
Q ss_pred CceEEEEecccccc-cccccc--------ccccCCCcEEEecccc------cCCCcccc-cccceEEecccccc-CCCcc
Q psy8733 273 EASYLYYCDNETVD-GVEFNY--------IPDSQGIPLVSDMSSN------FLSRKFDV-SKFGVIIAGAQKNI-GPAGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~t-Gv~~p~--------i~~~~g~llvvDavSs------~G~~pIDv-~~~gvl~asaqK~l-GP~Gl 335 (621)
++++|.+++..+.+ |...+. +++++|+++|+|.+.. .+....++ ...+.++.|.+|++ ||.|
T Consensus 135 ~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g- 213 (357)
T 3lws_A 135 DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAG- 213 (357)
T ss_dssp SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSC-
T ss_pred CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCce-
Confidence 48899999888777 887762 3468999999998754 22222222 23467789999999 6999
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
|+++.++++++++... .. ..+....+++.....++ .+++... +.+ ++..++++++++.|++++|
T Consensus 214 g~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~-~~l~~~~-----~~~-~~~~~~~~~l~~~L~~~~g 277 (357)
T 3lws_A 214 AILAGPAAFCQTARIW-------KR--RYGGDLISLYPYIVSAD-YYYELRK-----DRM-GQYYEQAKQLAEQFNALPG 277 (357)
T ss_dssp EEEEECHHHHHHHHHH-------HH--HTTCCCSCCHHHHHHHH-HHHHHHT-----TCH-HHHHHHHHHHHHHHHTSTT
T ss_pred EEEEcCHHHHHHHHHH-------HH--HhcCCcccchHHHHHHH-HHHHHHH-----HHH-HHHHHHHHHHHHHHHhCCC
Confidence 9999999988765321 00 00111222333333332 3444321 222 2345667889999999877
Q ss_pred ccc
Q psy8733 416 FYE 418 (621)
Q Consensus 416 ~~~ 418 (621)
+..
T Consensus 278 ~~~ 280 (357)
T 3lws_A 278 VHT 280 (357)
T ss_dssp EEE
T ss_pred Cee
Confidence 754
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.4e-08 Score=113.86 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=86.7
Q ss_pred eEEEEecccccccccccc--c---cccCCCcEEEecccccCC--Ccc----c-cc---ccceE---EeccccccC-CCcc
Q psy8733 275 SYLYYCDNETVDGVEFNY--I---PDSQGIPLVSDMSSNFLS--RKF----D-VS---KFGVI---IAGAQKNIG-PAGI 335 (621)
Q Consensus 275 ~~V~~thnET~tGv~~p~--i---~~~~g~llvvDavSs~G~--~pI----D-v~---~~gvl---~asaqK~lG-P~Gl 335 (621)
++|.+|+. |.+|...|+ | ++.+ .+++|.+.+.+. .|. . +. ..|++ +.|.||+|| |++.
T Consensus 299 ~~vivt~p-n~~G~v~dl~~I~ela~~~--~livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqg 375 (715)
T 3n75_A 299 VHAVITNS-TYDGLLYNTDFIKKTLDVK--SIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQA 375 (715)
T ss_dssp SEEEEESS-CTTSEEECHHHHHHHCCCS--EEEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTC
T ss_pred eEEEEECC-CCCCccCCHHHHHHHhCcC--cEEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCe
Confidence 37888888 999999996 3 3333 278999987653 121 1 21 13544 899999996 8899
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR-QGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~-~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
|++.++++..... ++ ... .-..-.+|+...++++.+|++++.+ . | +.+.++..++++++++.|.+++
T Consensus 376 s~i~v~~~i~~~~-------~~--~~~-~~~~STSpsy~~~AsldaA~~~~~~~~-g-~~~~~~l~~~a~~~r~~L~~i~ 443 (715)
T 3n75_A 376 SMIHVKGDVNEET-------FN--EAY-MMHTTTSPHYGIVASTETAAAMMKGNA-G-KRLINGSIERAIKFRKEIKRLR 443 (715)
T ss_dssp EEEEEESCCCHHH-------HH--HHH-HHTSCSSCCHHHHHHHHHHHHHHSHHH-H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCchhhHHH-------HH--HHH-HhhcCCCchHHHHHHHHHHHHHHHhhc-c-HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999987621100 00 000 0011257899999999999999975 4 4 4578889999999999998875
Q ss_pred C
Q psy8733 415 K 415 (621)
Q Consensus 415 g 415 (621)
+
T Consensus 444 ~ 444 (715)
T 3n75_A 444 T 444 (715)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.8e-07 Score=94.65 Aligned_cols=126 Identities=14% Similarity=0.215 Sum_probs=77.4
Q ss_pred CCceEEEEecccc-ccccccc----c-----ccccCCCcEEEecccc-cCCC--ccccccc-c----eEEeccccccCCC
Q psy8733 272 PEASYLYYCDNET-VDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVSKF-G----VIIAGAQKNIGPA 333 (621)
Q Consensus 272 ~~t~~V~~thnET-~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~~~-g----vl~asaqK~lGP~ 333 (621)
+++++|.+..+.+ .+|+..+ + +++++|+++|+|-+++ +|.. ..-++.+ + ++++| |.+|.
T Consensus 189 ~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~s--K~l~~- 265 (430)
T 3i4j_A 189 ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLG--KGLAA- 265 (430)
T ss_dssp GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEEC--GGGTT-
T ss_pred CCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEc--ccccC-
Confidence 3466777766666 7788665 2 4568899999999987 5322 2223333 2 56555 99985
Q ss_pred c---cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G---ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 334 G---lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
| +|.++.++++.+.+.+....+ ....++ +.|..+..+..++|+.+.+. + +.++.+++.+++++.|
T Consensus 266 G~~r~G~~~~~~~i~~~~~~~~~~~-------~~~~t~-~~~~~~~aaa~aal~~~~~~-~---~~~~~~~~~~~~~~~l 333 (430)
T 3i4j_A 266 GYAPLAGLLAAPQVYETVMGGSGAF-------MHGFTY-AGHPVSVAAGLSVLDIVERE-D---LTGAAKERGAQLLAGL 333 (430)
T ss_dssp TSSCCEEEEECHHHHHHHHHTTCBC-------CCCCTT-TTCHHHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHH
T ss_pred CccccEEEEECHHHHHHHhccCCcc-------cccCCC-CCCHHHHHHHHHHHHHHHcc-c---HHHHHHHHHHHHHHHH
Confidence 7 799999999987664311100 112233 45566677777888888664 3 3344444555555555
Q ss_pred Hc
Q psy8733 411 DN 412 (621)
Q Consensus 411 ~~ 412 (621)
.+
T Consensus 334 ~~ 335 (430)
T 3i4j_A 334 QA 335 (430)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-06 Score=93.98 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=83.2
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-c--CCCccccccc----ceEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-F--LSRKFDVSKF----GVIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~--G~~pIDv~~~----gvl~asaqK~lGP~G- 334 (621)
+++++|.+..+.+.+|+..+ + +++++|+++|+|-+++ + |. ....+.+ +++.+| |.+| +|
T Consensus 198 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~-~~~~~~~~~~~di~t~s--K~~~-~G~ 273 (427)
T 3fq8_A 198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAY-GGVQEKFGVTPDLTTLG--KIIG-GGL 273 (427)
T ss_dssp TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT-THHHHHTTCCCSEEEEC--GGGG-TTS
T ss_pred CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCc-chhhHhcCCCCChhhhh--hhhh-CCc
Confidence 36888888888888899887 3 4568999999999997 1 11 1222222 255555 9998 36
Q ss_pred -cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 -ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|+++.++++++.+.+..+. ....+ .++|..+..+..++++.+.+. .+.++.+++.+++++.|.++
T Consensus 274 ~~G~~~~~~~~~~~~~~~~~~--------~~~~t-~~~~~~~~aa~~aal~~~~~~----~~~~~~~~~~~~~~~~l~~~ 340 (427)
T 3fq8_A 274 PVGAYGGKREIMQLVAPAGPM--------YQAGT-LSGNPLAMTAGIKTLELLRQP----GTYEYLDQITKRLSDGLLAI 340 (427)
T ss_dssp SCEEEEECHHHHTTBTTTSSB--------CCCCT-TTTCHHHHHHHHHHHHHHTST----THHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcHHHHHhhccCCCc--------cccCC-CCcCHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 99999999998766431110 01122 244667777777888887553 34566666777777777654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-06 Score=94.73 Aligned_cols=129 Identities=13% Similarity=0.193 Sum_probs=80.0
Q ss_pred CCceEEEEecc-ccccccccc----c-----ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC-C-
Q psy8733 272 PEASYLYYCDN-ETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG-P- 332 (621)
Q Consensus 272 ~~t~~V~~thn-ET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG-P- 332 (621)
+++++|.+..+ .+ +|+..| + +++++|+++|+|-+++ +|- ...-.+.++ ++++| |.+| .
T Consensus 214 ~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l~~G~ 290 (452)
T 3n5m_A 214 ETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMA--KGITSAY 290 (452)
T ss_dssp GGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTS
T ss_pred CCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeec--ccccCCC
Confidence 45778888887 78 998775 2 4568999999999987 542 222333333 55554 9885 2
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
..+|.++.++++.+.+.+... ... .....+++ .|..+.++..++|+.+.+. + +.++.+++.+++++.|.+
T Consensus 291 ~~ig~~~~~~~i~~~~~~~~~----~~~-~~~~~t~~-~~~~~~aaa~aal~~~~~~-~---~~~~~~~~~~~l~~~L~~ 360 (452)
T 3n5m_A 291 LPLSATAVKREIYEAFKGKGE----YEF-FRHINTFG-GNPAACALALKNLEIIENE-N---LIERSAQMGSLLLEQLKE 360 (452)
T ss_dssp SCCEEEEEEHHHHGGGCSSST----TCS-CCCCCSST-TCHHHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEECHHHHHHHhhccC----CCC-ccccCCCC-CCHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHH
Confidence 568999999999887643100 000 01123343 3445566666888888664 3 344555556666666655
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 361 ~ 361 (452)
T 3n5m_A 361 E 361 (452)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-07 Score=101.10 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=81.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEeccccc--CCCcccccccceEEeccccccCCC--ccEE--E
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNF--LSRKFDVSKFGVIIAGAQKNIGPA--GITV--V 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~--G~~pIDv~~~gvl~asaqK~lGP~--Glg~--l 338 (621)
+++++++|++++..+.+|...|+ +++++|+++|+|.+++. ...|+++ ..++++.|.+|++|.+ .+|. +
T Consensus 149 i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~-g~div~~S~sK~l~g~g~~~gG~~v 227 (400)
T 3nmy_A 149 IRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSL-GADLVVHSATKYLNGHSDMVGGIAV 227 (400)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGG-TCSEEEEETTTTTTCSSSCCCEEEE
T ss_pred hccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhc-CCcEEEecCccccCCCCCcceeEEE
Confidence 55789999999999999999986 45789999999999874 3356654 2459999999999633 3433 3
Q ss_pred EE-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 339 IV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 339 iv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
++ ++++.+++.. +.. ..-.+++....+.+...++ .++.+.+++.+.+..+.+.|.+.+.
T Consensus 228 v~~~~~~~~~l~~-------~~~-----~~g~~~~~~~a~~~l~~l~------~l~~r~~~~~~~a~~l~~~L~~~p~ 287 (400)
T 3nmy_A 228 VGDNAELAEQMAF-------LQN-----SIGGVQGPFDSFLALRGLK------TLPLRMRAHCENALALAQWLETHPA 287 (400)
T ss_dssp ECSCHHHHHHHHH-------HHH-----HHCCBCCHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred EeCCHHHHHHHHH-------HHH-----hcCCCCCHHHHHHHHHhHh------HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33 5556555421 000 0011223333333333333 2555667778888888888887663
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-06 Score=91.78 Aligned_cols=130 Identities=16% Similarity=0.130 Sum_probs=78.3
Q ss_pred CCceEEEEeccc-cccccccc----c-----ccccCCCcEEEecccc-cC--CCcccccccc----eEEeccccccCC--
Q psy8733 272 PEASYLYYCDNE-TVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FL--SRKFDVSKFG----VIIAGAQKNIGP-- 332 (621)
Q Consensus 272 ~~t~~V~~thnE-T~tGv~~p----~-----i~~~~g~llvvDavSs-~G--~~pIDv~~~g----vl~asaqK~lGP-- 332 (621)
+++++|.+..+. +.+|...+ + +++++|+++|+|-+++ +| ....-.+.++ ++++| |.+|.
T Consensus 209 ~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~s--K~l~~G~ 286 (448)
T 3dod_A 209 EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAG--KGITGGY 286 (448)
T ss_dssp GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTS
T ss_pred CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEec--ccccCCc
Confidence 356777777766 67787665 2 4568999999999987 54 2222333333 56555 99964
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
..+|.++.++++.+.+...... ........++ +.|.....+..++|+.+.+. + +.++.+++.+++++.|.+
T Consensus 287 ~~ig~v~~~~~~~~~~~~~~~~----~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~-~---~~~~~~~~~~~~~~~l~~ 357 (448)
T 3dod_A 287 LPIAVTFATEDIYKAFYDDYEN----LKTFFHGHSY-TGNQLGCAVALENLALFESE-N---IVEQVAEKSKKLHFLLQD 357 (448)
T ss_dssp SCCEEEEEEHHHHHTTCSCGGG----CCCCCCCCTT-TTCHHHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECHHHHHHhhhcccc----CCcccccCCC-CcCHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHH
Confidence 3579999999998866431000 0000112333 33445667777888888664 3 344555555666666654
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-06 Score=92.11 Aligned_cols=127 Identities=12% Similarity=0.052 Sum_probs=81.0
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccccC--CCcccccccc----eEEeccccccC-CCcc
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFL--SRKFDVSKFG----VIIAGAQKNIG-PAGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G--~~pIDv~~~g----vl~asaqK~lG-P~Gl 335 (621)
+++++|.+..+.+.+|+..+ + +++++|+++|+|-+++-. .....++.++ ++.+| |.+| +-.+
T Consensus 201 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~i 278 (434)
T 3l44_A 201 HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLTALG--KVIGGGLPI 278 (434)
T ss_dssp GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEEEE--GGGGTTSSC
T ss_pred CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCeeehh--hhhcCCcCe
Confidence 45778888888888888876 2 456899999999999721 1111122222 44444 9996 4568
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|.++.++++++.+.+..+. ....+ .++|..+..+..++|+.+.+. .+.++.+++.+++++.|.++
T Consensus 279 G~~~~~~~i~~~~~~~~~~--------~~~~t-~~~~~~a~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~ 343 (434)
T 3l44_A 279 GAYGGKKEIMEQVAPLGPA--------YQAGT-MAGNPASMASGIACLEVLQQE----GLYEKLDELGATLEKGILEQ 343 (434)
T ss_dssp EEEEECHHHHTTBTTTSSB--------CCCCT-TTTCHHHHHHHHHHHHHHTST----THHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcHHHHHhhccCCCc--------ccCCC-CCcCHHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765432111 01223 345556667777888877553 44556666677777777653
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-07 Score=100.70 Aligned_cols=129 Identities=7% Similarity=0.068 Sum_probs=74.8
Q ss_pred ceEEEEecccc-ccccccc---c-----ccccCCCcEEEecccccC-----------CCcccc-------ccc-ceEEec
Q psy8733 274 ASYLYYCDNET-VDGVEFN---Y-----IPDSQGIPLVSDMSSNFL-----------SRKFDV-------SKF-GVIIAG 325 (621)
Q Consensus 274 t~~V~~thnET-~tGv~~p---~-----i~~~~g~llvvDavSs~G-----------~~pIDv-------~~~-gvl~as 325 (621)
.++|.+++..+ .+|...+ + +++++|+++|+|.+++.| .....+ ..+ |++++|
T Consensus 175 ~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S 254 (456)
T 2ez2_A 175 IAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMS 254 (456)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEE
T ss_pred eeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEe
Confidence 48888885554 8898876 2 456899999999999874 111111 122 466678
Q ss_pred cccccCCCccEEEEE-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q psy8733 326 AQKNIGPAGITVVIV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSV 404 (621)
Q Consensus 326 aqK~lGP~Glg~liv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~ 404 (621)
++|+.|++..|+++. ++++.+++......+.. ...+.+.+...+.++ ++..+... + +...++.+++.+
T Consensus 255 ~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~--a~~~~~~~-~-~~~~~~~~~~~~ 323 (456)
T 2ez2_A 255 GKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEG-------MPSYGGLAGRDMEAM--AIGLREAM-Q-YEYIEHRVKQVR 323 (456)
T ss_dssp TTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTC-------CTTTTTCCHHHHHHH--HHHHHHHT-C-HHHHHHHHHHHH
T ss_pred CcccCCCCceeEEEECCHHHHHHHHHHHhhccC-------cccccCcchhHHHHH--HHHHHHHh-H-HHHHHHHHHHHH
Confidence 899987444688888 57777655321110000 011222222233332 22222222 1 456667777888
Q ss_pred HHHHHHHcc
Q psy8733 405 LLYQEIDNS 413 (621)
Q Consensus 405 ~L~e~L~~~ 413 (621)
++++.|.+.
T Consensus 324 ~l~~~L~~~ 332 (456)
T 2ez2_A 324 YLGDKLKAA 332 (456)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 999999875
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=8.7e-07 Score=94.90 Aligned_cols=126 Identities=10% Similarity=0.087 Sum_probs=79.4
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccccC--CCccccccc----ceEEeccccccC-CCcc
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFL--SRKFDVSKF----GVIIAGAQKNIG-PAGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G--~~pIDv~~~----gvl~asaqK~lG-P~Gl 335 (621)
+++++|.+..+.+.+|+..+ + +++++|+++|+|-+++-. ....-.+.+ +++.+| |.+| .-.+
T Consensus 199 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~i 276 (429)
T 3k28_A 199 DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTCLG--KVIGGGLPV 276 (429)
T ss_dssp GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEEEC--GGGGTTSCC
T ss_pred CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCceehhh--hhhcCCCCe
Confidence 45778888887777888876 2 456899999999998611 111112222 255444 9996 4568
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|+++.++++++.+.+..+. ...+++ ++|..+..+..++|+.+. +++.++.+++.+++++.|.++
T Consensus 277 G~~~~~~~~~~~~~~~~~~--------~~~~t~-~~~~~a~aaa~aal~~~~-----~~~~~~~~~~~~~l~~~L~~~ 340 (429)
T 3k28_A 277 GAYGGKAEIMRQVAPSGPI--------YQAGTL-SGNPLAMAAGYETLVQLT-----PESYVEFERKAEMLEAGLRKA 340 (429)
T ss_dssp EEEEECHHHHTTBTTTSSB--------CCCCTT-TTCHHHHHHHHHHHHTCC-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHhhhccCCCc--------cccCCC-CCChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765431110 012233 344555555555665432 567777888888888888764
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.1e-09 Score=112.24 Aligned_cols=133 Identities=11% Similarity=0.120 Sum_probs=89.9
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----cccc---cc--cc--eEEeccccccCC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----KFDV---SK--FG--VIIAGAQKNIGP 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----pIDv---~~--~g--vl~asaqK~lGP 332 (621)
+++++|.+++..+.+|...+. +++++|+++|+|.+.+.+.. +.++ +. .+ +++.|.+|++|.
T Consensus 163 ~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 242 (392)
T 3b1d_A 163 NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNI 242 (392)
Confidence 568889899999999998762 34578999999999887432 2223 21 33 778899999986
Q ss_pred Cc--cEEEEEchh-HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 333 AG--ITVVIVRED-LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 333 ~G--lg~livr~~-ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
+| +|+++.+++ +.+.+... .....+.+++....+++.++|+.. +. .++++.++.+++.+++.+.
T Consensus 243 ~G~r~G~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~l~~~-~~-~~~~~~~~~~~~~~~l~~~ 309 (392)
T 3b1d_A 243 AGTKNSYAIIENPTLCAQFKHQ-----------QLVNNHHEVSSLGYIATETAYRYG-KP-WLVALKAVLEENIQFAVEY 309 (392)
Confidence 66 688888654 65544221 011223455666666666676632 22 4778888888888889888
Q ss_pred HHc-cCCcc
Q psy8733 410 IDN-SDKFY 417 (621)
Q Consensus 410 L~~-~~g~~ 417 (621)
|++ ++|+.
T Consensus 310 l~~~~~~~~ 318 (392)
T 3b1d_A 310 FAQEAPRLK 318 (392)
Confidence 887 55543
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-06 Score=92.90 Aligned_cols=126 Identities=11% Similarity=0.022 Sum_probs=81.7
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc---cCCCcccccccc----eEEeccccccC-CCc
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN---FLSRKFDVSKFG----VIIAGAQKNIG-PAG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs---~G~~pIDv~~~g----vl~asaqK~lG-P~G 334 (621)
+++++|.+.++...+|+..+ + +++++|+++|+|-+++ .|. ...++.++ ++.+| |.+| .-.
T Consensus 199 ~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~-~~~~~~~~~~pdi~t~s--K~~~~G~~ 275 (429)
T 4e77_A 199 QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL-AGAQDYYHVIPDLTCLG--KIIGGGMP 275 (429)
T ss_dssp TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT-TCHHHHTTCCCSEEEEE--GGGGTTSC
T ss_pred CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc-chHHHhcCCCCCeeeec--ccccCCCC
Confidence 46788888887777888877 3 4568999999999998 332 22233332 55444 9996 335
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|+++.++++++.+.+.... ...++ .++|..+..+..++|+.+.+. .+.++.+++.+++++.|.++
T Consensus 276 ~G~~~~~~~~~~~l~~~~~~--------~~~~t-~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~ 341 (429)
T 4e77_A 276 VGAFGGRREVMNALAPTGPV--------YQAGT-LSGNPIAMAAGFACLTEISQV----GVYETLTELTDSLATGLRHA 341 (429)
T ss_dssp CEEEEECHHHHTTBTTTSSB--------CC--C-CCCCHHHHHHHHHHHHHHTST----THHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHhccCCCc--------cccCC-CCCCHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHH
Confidence 88999999998765431110 01122 356677788888889988543 44556666666777766653
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-06 Score=92.96 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=84.4
Q ss_pred CCceEEEEec-cccccccccc----c-----ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccCC--
Q psy8733 272 PEASYLYYCD-NETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIGP-- 332 (621)
Q Consensus 272 ~~t~~V~~th-nET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lGP-- 332 (621)
+++++|.+.. ..+.+|+..+ + +++++|+++|+|-+++ +|- ..+-++.++ ++.+ -|.+|.
T Consensus 232 ~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~--sK~l~gG~ 309 (457)
T 3tfu_A 232 GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCV--GKALTGGY 309 (457)
T ss_dssp GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGTTS
T ss_pred CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEE--ChhhhCCC
Confidence 4678888877 6777898875 2 4568999999999987 542 222333333 5544 499964
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
..+|.++.++++.+.+....+.- .....++ +.|..+.++..++|+.+.++ .+.++.+++.+++++.|.+
T Consensus 310 ~~lG~v~~~~~i~~~~~~~~~~~------~~~~~t~-~~n~~a~aaa~aaL~~~~~~----~~~~~~~~~~~~l~~~L~~ 378 (457)
T 3tfu_A 310 LSLAATLCTADVAHTISAGAAGA------LMHGPTF-MANPLACAVSVASVELLLGQ----DWRTRITELAAGLTAGLDT 378 (457)
T ss_dssp SCCEEEEEEHHHHHHHHHSSSCS------CCCCCTT-TTCHHHHHHHHHHHHHHHTS----CHHHHHHHHHHHHHHHHGG
T ss_pred cceEEEEEcHHHHHHhhccCCCc------eeEecCC-CcCHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHH
Confidence 46899999999987663111110 0112334 34555666777889988764 3466677788888888887
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 379 l 379 (457)
T 3tfu_A 379 A 379 (457)
T ss_dssp G
T ss_pred H
Confidence 5
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=5e-06 Score=92.95 Aligned_cols=79 Identities=14% Similarity=0.294 Sum_probs=60.3
Q ss_pred CCCCceEEEEecccccccccccc--------cc--ccCCCcEEEecccccCCC-ccccccc--c--eEEeccccccCCCc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IP--DSQGIPLVSDMSSNFLSR-KFDVSKF--G--VIIAGAQKNIGPAG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~--~~~g~llvvDavSs~G~~-pIDv~~~--g--vl~asaqK~lGP~G 334 (621)
+++++++|++|+..|.||...+. ++ +++|+++|+|.+.+-... +..+... + +++.|-.|.+|.+|
T Consensus 242 ~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G 321 (546)
T 2zy4_A 242 KDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG 321 (546)
T ss_dssp GSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG
T ss_pred hCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC
Confidence 35679999999999999999873 34 578999999999875432 2222211 3 88999999999899
Q ss_pred --cEEEEEchh-HHhhh
Q psy8733 335 --ITVVIVRED-LLEYA 348 (621)
Q Consensus 335 --lg~livr~~-ll~~~ 348 (621)
+|+++.+++ +++++
T Consensus 322 lRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 322 WRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp GCEEEEEEESSCHHHHH
T ss_pred cceEEEEECCHHHHHHH
Confidence 699999886 66654
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-05 Score=86.48 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=79.9
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccCC--C
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIGP--A 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lGP--~ 333 (621)
+++++|.+..+.+.+|+..+ + +++++|+++|+|-+++ +|-. ..-.+.++ ++++| |.+|. -
T Consensus 220 ~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~l~gG~~ 297 (460)
T 3gju_A 220 ETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIA--KGLTSAYA 297 (460)
T ss_dssp GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSS
T ss_pred CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeee--hhhcCCCC
Confidence 45778888888888888665 1 4568999999999988 5422 22233333 55555 99964 4
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGG-LAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gG-l~~i~~r~~~la~~L~e~L~~ 412 (621)
.+|.++.++++.+.+...... . .......++ +.|..+.++..++|+.+.++ + ++.+.+....+.+.|.+.+++
T Consensus 298 ~lg~v~~~~~i~~~~~~~~~~---~-~~~~~~~t~-~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~ 371 (460)
T 3gju_A 298 PLSGVIVADRVWQVLVQGSDK---L-GSLGHGWTY-SAHPICVAAGVANLELIDEM-DLVTNAGETGAYFRAELAKAVGG 371 (460)
T ss_dssp CCEEEEEEHHHHHHHHHHHHH---H-CSCSCCCTT-TTCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECHHHHHHHhccccc---c-cccccCCCC-CCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999998765310000 0 001112333 33445667777888888765 4 344444444444444444444
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
.
T Consensus 372 ~ 372 (460)
T 3gju_A 372 H 372 (460)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-05 Score=87.13 Aligned_cols=123 Identities=11% Similarity=0.137 Sum_probs=76.8
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccCC-Ccc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIGP-AGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lGP-~Gl 335 (621)
++++|.+..+....|+..+ + +++++|+++|+|-+++ +|- ...-.+.++ ++.+| |.+|+ -.+
T Consensus 227 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~s--K~l~~G~~i 304 (451)
T 3oks_A 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTA--KGIAGGLPL 304 (451)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSC
T ss_pred CEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeeh--hhhhCCcce
Confidence 4667777777666777765 2 4568999999999987 432 122333333 55554 99964 347
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|.++.++++.+.+.+. ....+++. |....++..++|+.+.+. .+.++.+++.+++++.|.++
T Consensus 305 G~v~~~~~~~~~~~~~-----------~~~~t~~~-~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~ 366 (451)
T 3oks_A 305 SAVTGRAEIMDSPHVS-----------GLGGTYGG-NPIACAAALATIETIESE----GLVARAQQIEKIMKDRLGRL 366 (451)
T ss_dssp EEEEEEHHHHTCSCTT-----------SBCCSSSS-CHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHhhhcCC-----------CcCCCCCC-CHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHH
Confidence 8999999987654321 12234443 445566667788887664 34455555666666666543
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.2e-06 Score=90.76 Aligned_cols=122 Identities=9% Similarity=0.126 Sum_probs=74.0
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCC--ccccccc----ceEEeccccccCC-Ccc
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNIGP-AGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~lGP-~Gl 335 (621)
++++|.+..+....|+..+ + +++++|+++|+|-+++ +|-. ..-.+.+ +++.+| |.+|+ -.+
T Consensus 225 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~s--K~~~~G~~~ 302 (453)
T 4ffc_A 225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMA--KGIAGGMPL 302 (453)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSC
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhh--hhhcCCcCe
Confidence 4566666666666677765 1 4568999999999987 4321 1222333 255555 99964 348
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
|.++.++++.+.+.+. ....+++. |.....+..++|+.+.+. + +.++.+++.+++++.|.+
T Consensus 303 G~~~~~~~i~~~~~~~-----------~~~~t~~~-~~~~~aaa~aal~~~~~~-~---~~~~~~~~~~~l~~~l~~ 363 (453)
T 4ffc_A 303 SAVTGRAELMDAVYAG-----------GLGGTYGG-NPVTCAAAVAALGVMREL-D---LPARARAIEASVTSRLSA 363 (453)
T ss_dssp EEEEEEHHHHTTSCTT-----------SSCCSSSS-CHHHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHhhhccc-----------CcCCCCCc-CHHHHHHHHHHHHHhhhh-h---HHHHHHHHHHHHHHHHHH
Confidence 8999999988755321 12334443 344556667788887664 3 344445555566665554
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.5e-06 Score=89.60 Aligned_cols=126 Identities=14% Similarity=0.151 Sum_probs=82.4
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccCC--C
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIGP--A 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lGP--~ 333 (621)
+++++|.+..+...+|+..+ + +++++|+++|+|-+++ +|-. ..-.+.++ ++++| |.+|- -
T Consensus 222 ~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~s--K~l~gg~~ 299 (472)
T 3hmu_A 222 NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIA--KGLSSGYA 299 (472)
T ss_dssp GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSS
T ss_pred CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeec--hhhhcCCc
Confidence 35677777777777888775 2 4568999999999987 5422 22223333 66665 99963 4
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSL-QKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~-~la~~L~e~L~~ 412 (621)
.+|.++.++++.+.+.+ .+ ....++++. |..+..+..++|+.+.++ .+.++.+ ++.+++++.|++
T Consensus 300 plG~v~~~~~i~~~~~~-~~--------~~~~~t~~~-np~a~aAa~aaL~~~~~~----~~~~~~~~~~~~~l~~~L~~ 365 (472)
T 3hmu_A 300 PIGGSIVCDEVAHVIGK-DE--------FNHGYTYSG-HPVAAAVALENLRILEEE----NILDHVRNVAAPYLKEKWEA 365 (472)
T ss_dssp CCEEEEEEHHHHHHHTT-SC--------BCCCCTTTT-CHHHHHHHHHHHHHHHHT----THHHHHHHTHHHHHHHHHHG
T ss_pred ceEEEEECHHHHHhccc-CC--------ccccCCCCC-CHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999887621 11 112334433 344566667789888664 3455666 777888888876
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 366 l 366 (472)
T 3hmu_A 366 L 366 (472)
T ss_dssp G
T ss_pred H
Confidence 5
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-05 Score=87.48 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=75.6
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCC--cccccccc----eEEeccccccCC--C
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNIGP--A 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~lGP--~ 333 (621)
+++++|.+..+.+.+|+..+ + +++++|+++|+|-+++ +|-. ..-.+.++ ++++| |.+|. -
T Consensus 218 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~~ 295 (459)
T 4a6r_A 218 DKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGYL 295 (459)
T ss_dssp GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTSS
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehh--hhhcCCCC
Confidence 35677777777777788765 2 4568999999999987 5322 22223333 66655 99963 5
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHHHHH
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSL-QKSVLLYQEI 410 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~-~la~~L~e~L 410 (621)
.+|.++.++++.+.+....+ .....+++ .|..+.++..++|+.+.++ + +.++.+ ++.+++++.|
T Consensus 296 ~lg~v~~~~~i~~~~~~~~~--------~~~~~t~~-~~~~~~aaa~aal~~~~~~-~---~~~~~~~~~~~~~~~~l 360 (459)
T 4a6r_A 296 PIGAVFVGKRVAEGLIAGGD--------FNHGFTYS-GHPVCAAVAHANVAALRDE-G---IVQRVKDDIGPYMQKRW 360 (459)
T ss_dssp CCEEEEECHHHHHHHHHHCT--------THHHHHHC-SCHHHHHHHHHHHHHHHHT-C---HHHHHHHTHHHHHHHHH
T ss_pred CccceeeCHHHHHHhhcCCC--------cccCCCCC-CCHHHHHHHHHHHHHHhcc-h---HHHHHHHHHHHHHHHHH
Confidence 68999999998876531100 00112333 3445566667788888665 3 333444 4555555555
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-05 Score=86.20 Aligned_cols=132 Identities=12% Similarity=0.071 Sum_probs=84.8
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCC--ccccc-cc----ceEEeccccccC-C-
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSR--KFDVS-KF----GVIIAGAQKNIG-P- 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~--pIDv~-~~----gvl~asaqK~lG-P- 332 (621)
+++++|.+..+...+|+..+ + +++++|+++|+|-+++ +|-. ..-.+ .+ |++++| |.+| .
T Consensus 220 ~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G~ 297 (476)
T 3i5t_A 220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA--KGVTSGY 297 (476)
T ss_dssp GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTTS
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhh--hhhcCCC
Confidence 45788888888788887655 2 4568999999999987 5321 22233 33 366665 9996 3
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
-.+|.++.++++.+.+.+.... .. .....++++ .|..+..+..++|+.+.++ .+.++.+++.+++++.|.+
T Consensus 298 ~plg~v~~~~~i~~~~~~~~~~---~~-~~~~~~t~~-~np~a~aAa~aaL~~~~~~----~~~~~~~~~~~~l~~~L~~ 368 (476)
T 3i5t_A 298 VPLGGLAISEAVLARISGENAK---GS-WFTNGYTYS-NQPVACAAALANIELMERE----GIVDQAREMADYFAAALAS 368 (476)
T ss_dssp SCCEEEEECHHHHHTTSGGGCT---TC-EECCCCTTT-TCHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHT
T ss_pred cCeEEEEECHHHHHHHhcCCcc---cc-cccccCCCC-cCHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHH
Confidence 4579999999998765431000 00 001223443 3445677777889888764 4566677788888888876
Q ss_pred cC
Q psy8733 413 SD 414 (621)
Q Consensus 413 ~~ 414 (621)
+.
T Consensus 369 l~ 370 (476)
T 3i5t_A 369 LR 370 (476)
T ss_dssp TT
T ss_pred Hh
Confidence 53
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-05 Score=86.03 Aligned_cols=127 Identities=8% Similarity=-0.045 Sum_probs=80.7
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCCC---ccccccc----ceEEeccccccC-CCc
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLSR---KFDVSKF----GVIIAGAQKNIG-PAG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~~---pIDv~~~----gvl~asaqK~lG-P~G 334 (621)
+++++|.+.++.+.+|+..| + +++++|+++|+|.+++ |.+ ...++.+ |++ +..|++| .-.
T Consensus 200 ~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~ 276 (453)
T 2cy8_A 200 SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHGMQALLDVQPDLT--CLAKASAGGLP 276 (453)
T ss_dssp GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTHHHHHHTCCCSEE--EEEGGGGTTSS
T ss_pred CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchhhhHHhCCCCcEE--EEChhhhCCcc
Confidence 36788888777777898776 3 4568999999999998 321 1122222 344 4459996 345
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW-IKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~-i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|+++.++++++.+.+.... . ....+++ ++|....++..++|+. + +. .+.++.+++.+++++.|+++
T Consensus 277 ~G~v~~~~~~~~~l~~~~~~-----~-~~~~~t~-~~n~~~~aa~~aal~~~~-~~----~~~~~~~~~~~~l~~~L~~~ 344 (453)
T 2cy8_A 277 GGILGGREDVMGVLSRGSDR-----K-VLHQGTF-TGNPITAAAAIAAIDTIL-ED----DVCAKINDLGQFAREAMNHL 344 (453)
T ss_dssp CEEEEECHHHHTTSSSCC---------------C-CCCHHHHHHHHHHHHHHH-HT----THHHHHHHHHHHHHHHHHHH
T ss_pred eEEEechHHHHHHhccccCC-----C-ceeCCCC-CCCHHHHHHHHHHHHHHh-hh----hHHHHHHHHHHHHHHHHHHH
Confidence 89999999988765431000 0 0011233 3455666777888887 7 43 34567777888888888764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.9e-06 Score=86.94 Aligned_cols=134 Identities=15% Similarity=0.204 Sum_probs=82.4
Q ss_pred CCceEEEEecccccccccccc--------ccccCCCcEEEecccc-cCCCc-----ccc----cccc--eEEeccccccC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSN-FLSRK-----FDV----SKFG--VIIAGAQKNIG 331 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs-~G~~p-----IDv----~~~g--vl~asaqK~lG 331 (621)
++++++.+++..|.||...+. +++++|+++|+|.+.+ ++..+ ..+ +..+ +++.|..|.+|
T Consensus 182 ~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 261 (409)
T 4eu1_A 182 EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG 261 (409)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS
T ss_pred CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc
Confidence 346667778888999999883 3467899999999944 43322 111 1122 66777789999
Q ss_pred CCc--cEEE--EE-chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH-----hhCCHHHHHHHHHH
Q psy8733 332 PAG--ITVV--IV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK-----RQGGLAKMEQNSLQ 401 (621)
Q Consensus 332 P~G--lg~l--iv-r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~-----~~gGl~~i~~r~~~ 401 (621)
.+| +|++ ++ ++++.+.+.. . +.. . ......++|.....++..+|+... .. .++.+.++.++
T Consensus 262 ~~G~riG~~~~v~~~~~~~~~l~~---~---~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~ 332 (409)
T 4eu1_A 262 LYGHRCGALHISTASAEEAKRLVS---Q---LAL-L-IRPMYNNPPLYGAWVVSSILKDPQLTALWKK-ELKQMSSRIAE 332 (409)
T ss_dssp CGGGCCEEEEEECSSHHHHHHHHH---H---HHH-H-HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHH
T ss_pred CccCCceEEEEEeCCHHHHHHHHH---H---HHH-H-HhhhcCCCChHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHH
Confidence 888 6775 44 4553222210 0 000 0 012234556666666666666220 11 26788888999
Q ss_pred HHHHHHHHHHccC
Q psy8733 402 KSVLLYQEIDNSD 414 (621)
Q Consensus 402 la~~L~e~L~~~~ 414 (621)
+.+++++.|++++
T Consensus 333 ~~~~l~~~L~~~g 345 (409)
T 4eu1_A 333 VRKRLVSELKACG 345 (409)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998864
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.5e-05 Score=85.97 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=82.4
Q ss_pred CCCCceEEEEeccccccccccccccccCCCcEEEecccccCCCc-cccc-ccceEEeccccccCCCc--cEEEEEc-hhH
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNYIPDSQGIPLVSDMSSNFLSRK-FDVS-KFGVIIAGAQKNIGPAG--ITVVIVR-EDL 344 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~i~~~~g~llvvDavSs~G~~p-IDv~-~~gvl~asaqK~lGP~G--lg~livr-~~l 344 (621)
+++++++|.+++-.|.||...+.+. +++..+.|...--...+ .++. +-.+++.|.+|.+|++| +|+++.+ +++
T Consensus 193 ~~~~~k~v~l~~p~NPtG~~~~~~l--~~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l 270 (427)
T 2hox_A 193 SNPEQYIEMVTSPNNPEGLLRHAVI--KGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESV 270 (427)
T ss_dssp SCGGGEEEEEESSCTTTCCCCCCSS--TTCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHH
T ss_pred hcCCceEEEEcCCCCCcccccHHHH--cCCCEEEeecccCCCCCccccCCCceEEEEeChhcCCCCCceEEEEEECCHHH
Confidence 4457899999999999999888322 24556667543211111 2222 22389999999999999 8999995 788
Q ss_pred HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH----HHH-----hhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 345 LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA----WIK-----RQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 345 l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~----~i~-----~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
++++... .. ....+++ .....++..+|+ |+. -..=++.+.++.+++.+++++.|++++|
T Consensus 271 ~~~l~~~-------~~----~~~~~~~-~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 338 (427)
T 2hox_A 271 YNNLLNY-------MT----KNTEGTP-RETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDR 338 (427)
T ss_dssp HHHHHHH-------HH----HHTSSCC-HHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHH-------HH----hcCCCCC-HHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 7765321 00 0112333 333333333443 221 0001456677888888999999998866
Q ss_pred ccc
Q psy8733 416 FYE 418 (621)
Q Consensus 416 ~~~ 418 (621)
+..
T Consensus 339 ~~~ 341 (427)
T 2hox_A 339 FSY 341 (427)
T ss_dssp EEC
T ss_pred ccc
Confidence 643
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-06 Score=90.94 Aligned_cols=101 Identities=46% Similarity=0.846 Sum_probs=85.3
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
+|++.+|.+|.+||+|+++++++++++++..+..|.+++|.....++++..|||++.++.+...|+++++.||++.+.++
T Consensus 188 ~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~ 267 (362)
T 2c0r_A 188 FGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQA 267 (362)
T ss_dssp CSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CcEEEEeccccccCcCcEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 37888999999999999999999999877666667777665544566778899999999999999999988889999999
Q ss_pred HHHHHHHHHHHHhccCCcccc
Q psy8733 529 SLQKSVLLYQEIDNSDKFYEC 549 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~ 549 (621)
.+++++.+++.+++.+++|..
T Consensus 268 ~~~~~~~l~~~L~~~~~~~~~ 288 (362)
T 2c0r_A 268 NRKKASLIYDAIDQSGGFYRG 288 (362)
T ss_dssp HHHHHHHHHHHHHTSTTSSEE
T ss_pred HHHHHHHHHHHHHHcCCcccc
Confidence 999999999999876434443
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.9e-05 Score=84.42 Aligned_cols=126 Identities=13% Similarity=0.057 Sum_probs=83.0
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC-Cccccccc----ceEEeccccccCC-CccE
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS-RKFDVSKF----GVIIAGAQKNIGP-AGIT 336 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~-~pIDv~~~----gvl~asaqK~lGP-~Glg 336 (621)
++++|.+.++.+.+|+..| + +++++|+++|+|.+++ +.. ....++.+ |++ +..|++|+ -.+|
T Consensus 203 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G 280 (434)
T 2epj_A 203 RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYFNIEGDII--VLGKIIGGGFPVG 280 (434)
T ss_dssp GEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCE
T ss_pred CEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHhCCCCCee--eecchhcCCccee
Confidence 6788888888777898876 3 4568999999999998 311 11222222 244 44599964 2379
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+++.++++++.+.+..+. ...+++ ++|....+++.++|+.+.+. + +.++.+++.+++++.|+++
T Consensus 281 ~v~~~~~~~~~l~~~~~~--------~~~~t~-~~~~~~~aa~~a~l~~~~~~-~---~~~~~~~~~~~l~~~L~~~ 344 (434)
T 2epj_A 281 AVAGSREVMSLLTPQGKV--------FNAGTF-NAHPITMAAGLATLKALEEE-P---VYSVSREAAKALEEAASEV 344 (434)
T ss_dssp EEEECHHHHTTBTTTSSB--------CCCCTT-TTCHHHHHHHHHHHHHHHHS-C---HHHHHHHHHHHHHHHHHHH
T ss_pred eeeecHHHHHhhccCCCc--------ccCCCC-CcCHHHHHHHHHHHHHHHhc-C---HHHHHHHHHHHHHHHHHHH
Confidence 999999988765431110 012233 35556677888899988763 3 4566777788888888764
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.1e-05 Score=86.06 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=78.0
Q ss_pred eEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc--------cccccceEEeccccccC-CCccEEEEE
Q psy8733 275 SYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF--------DVSKFGVIIAGAQKNIG-PAGITVVIV 340 (621)
Q Consensus 275 ~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI--------Dv~~~gvl~asaqK~lG-P~Glg~liv 340 (621)
.+|..+...+..|..-|+ +++++|++++||.+-..-...+ +.+..|+++.|+|||++ |.|.+++.+
T Consensus 200 ~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~ 279 (450)
T 3bc8_A 200 LCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAG 279 (450)
T ss_dssp EEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEE
T ss_pred EEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEe
Confidence 334444333333466665 4578999999997755433332 11345799999999996 999999999
Q ss_pred ch-hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC---Cc
Q psy8733 341 RE-DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD---KF 416 (621)
Q Consensus 341 r~-~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~---g~ 416 (621)
++ +.++++.. . |. +....+|. +.+..++..+-.. |+.++.++..++++++++.|.+++ |+
T Consensus 280 rd~~~~~~~~~---~---~~-----g~~s~Sps----L~l~~~l~~~G~~-g~~~~i~~~~~~a~~l~~~l~~~~~~~g~ 343 (450)
T 3bc8_A 280 FNEPFIQDISK---M---YP-----GRASASPS----LDVLITLLSLGCS-GYRKLLKERKEMFVYLSTQLKKLAEAHNE 343 (450)
T ss_dssp SCHHHHHHHHH---H---SC-----SCBCSHHH----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHH---H---hh-----cCCcccHH----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHhcCc
Confidence 64 34443321 1 11 01111232 2222233333333 677777888899999999998887 66
Q ss_pred ccC
Q psy8733 417 YEC 419 (621)
Q Consensus 417 ~~~ 419 (621)
++.
T Consensus 344 ~~l 346 (450)
T 3bc8_A 344 RLL 346 (450)
T ss_dssp CBC
T ss_pred eec
Confidence 554
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.08 E-value=9.2e-05 Score=78.84 Aligned_cols=127 Identities=11% Similarity=0.093 Sum_probs=84.1
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCC-Cccccccc----ceEEeccccccCC-Ccc
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLS-RKFDVSKF----GVIIAGAQKNIGP-AGI 335 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~-~pIDv~~~----gvl~asaqK~lGP-~Gl 335 (621)
+++++|.+.++...+|+..| + + +++|+++|+|-+++ +.. ....++.+ |++ +..|.+|+ -.+
T Consensus 198 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~ 274 (424)
T 2e7u_A 198 EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPDLV--TLGKILGGGLPA 274 (424)
T ss_dssp GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGGTTSSC
T ss_pred CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcchh--hhhhhhhCCcce
Confidence 35677888777766898776 3 7 88999999999998 311 11112222 244 44699973 248
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|+++.++++.+.+.+..+. ...+++ ++|..+..+..++|+.+.+. +.+.++.+++.+++++.|+++
T Consensus 275 G~~~~~~~~~~~~~~~~~~--------~~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~l~~~L~~~ 340 (424)
T 2e7u_A 275 AAYAGRREIMEKVAPLGPV--------YQAGTL-SGNPLAMAAGLATLELLEEN---PGYYAYLEDLGARLEAGLKEV 340 (424)
T ss_dssp EEEEECHHHHTTBTTTSSB--------CCCCTT-CSCHHHHHHHHHHHHHHHHC---THHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHhhhcccCCc--------ccCCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988765431110 012233 34455677778889988662 467788888888898888774
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0002 Score=77.56 Aligned_cols=138 Identities=11% Similarity=0.113 Sum_probs=85.9
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEeccc-ccCCCccccc---------ccc--eEEeccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSS-NFLSRKFDVS---------KFG--VIIAGAQKN 329 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavS-s~G~~pIDv~---------~~g--vl~asaqK~ 329 (621)
..++++++..+...|+||...+. ++++++++++.|.+- .+.....+.+ ..+ +++.|.=|+
T Consensus 187 ~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 266 (420)
T 4h51_A 187 APDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKN 266 (420)
T ss_dssp SCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred cCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccc
Confidence 45677777777777999998873 345789999999754 3433322221 112 677888999
Q ss_pred cCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH--HH----HhhCCHHHHHHHHHH
Q psy8733 330 IGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA--WI----KRQGGLAKMEQNSLQ 401 (621)
Q Consensus 330 lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~--~i----~~~gGl~~i~~r~~~ 401 (621)
+|-+| +|.+++..+..+........ .. .-..+.+..||..+..+...++. ++ .++ ++.+.++.++
T Consensus 267 ~~~~G~RvG~~~~~~~~~~~~~~~~~~---l~--~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~--~~~m~~r~~~ 339 (420)
T 4h51_A 267 MGLYSERAGTLSLLLKDKTKRADVKSV---MD--SLIREEYTCPPAHGARLAHLILSNNELRKEWEAE--LSAMAERIRT 339 (420)
T ss_dssp SCCGGGCEEEEEEECSCHHHHHHHHHH---HH--HHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH--HHHHHHHHHH
T ss_pred cccccCceEEEEecccCHHHHHHHHHH---HH--HhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHH--HHHHHHHHHH
Confidence 99887 88887765544322110000 00 00123455666666666555553 11 222 6888999999
Q ss_pred HHHHHHHHHHccC
Q psy8733 402 KSVLLYQEIDNSD 414 (621)
Q Consensus 402 la~~L~e~L~~~~ 414 (621)
+.+.|++.|.+.+
T Consensus 340 ~R~~l~~~L~~~g 352 (420)
T 4h51_A 340 MRRTVYDELLRLQ 352 (420)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998864
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00014 Score=79.78 Aligned_cols=126 Identities=16% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccccCCCccc---ccccc----eEEeccccccC-CCc
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSRKFD---VSKFG----VIIAGAQKNIG-PAG 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~pID---v~~~g----vl~asaqK~lG-P~G 334 (621)
+++.+|.+=..-...|++.|- +++++|+++|+|=+|+ | +-=. .+.+| +++.+ |.+| --.
T Consensus 219 ~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-G-R~G~~~a~e~~gv~PDi~t~g--K~lggG~P 294 (454)
T 4ao9_A 219 PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-S-RLAPHGLANKLGIRSDLTTLG--KYIGGGMS 294 (454)
T ss_dssp GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-G-GGSTTCHHHHHTCCCSEEEEE--GGGGTTSS
T ss_pred CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-C-CCccccchhccCCCCcEEEec--cccCCCCc
Confidence 345566554444445777662 4568999999999987 4 2111 12233 55554 8883 234
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+..++++.+.+.+....+ ...++++..|+. ..+..++|+.+.+. ++.++..++.++|+++|.++
T Consensus 295 iga~~~~~ei~~~~~~~~~~~-------~h~~T~~gnPla-~AAala~L~~l~~~----~~~~~~~~~g~~l~~~L~~l 361 (454)
T 4ao9_A 295 FGAFGGRADVMALFDPRTGPL-------AHSGTFNNNVMT-MAAGYAGLTKLFTP----EAAGALAERGEALRARLNAL 361 (454)
T ss_dssp CEEEEECHHHHGGGCTTTCSC-------CCCCTTTTCHHH-HHHHHHHHHHTSCH----HHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeeHHHHHHHHhhccCCc-------cccCCCCCCHHH-HHHHHHHHHHHhcc----ChhHHHHHHHHHHHHHHHHH
Confidence 889999999988765422111 124566555554 44455678888654 55667777788888877764
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=9.4e-06 Score=83.72 Aligned_cols=160 Identities=41% Similarity=0.790 Sum_probs=129.7
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
+|++.+|.+|.+||+|+++++++++++++..+..|..++++........++|||.+.++.+...++++.+.||++.+.++
T Consensus 187 ~di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 266 (360)
T 1w23_A 187 FGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQ 266 (360)
T ss_dssp CSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCEEEEEcccccCCCCcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 36778899999999999999999999877655556555544433356788999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHhccCCcccccCCC---CC--------c--ccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHH
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQA---GF--------P--LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEA 595 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~---~~--------~--~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~ 595 (621)
.+++++.+++.|++.+++|.+.+++ .. . ...+|.+.++++||....|+...+.||++....++.|++
T Consensus 267 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i 346 (360)
T 1w23_A 267 NEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDAC 346 (360)
T ss_dssp HHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHH
Confidence 9999999999999876554432111 11 1 134588889999999988887778899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy8733 596 VILVKFMKEFRHK 608 (621)
Q Consensus 596 ~~l~~~~~~~~~~ 608 (621)
+.+++.|+++.++
T Consensus 347 ~~~~~~l~~~~~~ 359 (360)
T 1w23_A 347 IALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=2e-06 Score=94.57 Aligned_cols=124 Identities=14% Similarity=0.093 Sum_probs=79.3
Q ss_pred CCceEEEEeccccccccccc----c-----ccccCCCcEEEecccccCCCc---ccccccc----eEEeccccccCCCc-
Q psy8733 272 PEASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSNFLSRK---FDVSKFG----VIIAGAQKNIGPAG- 334 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs~G~~p---IDv~~~g----vl~asaqK~lGP~G- 334 (621)
+++++|.+..+...+|+..| + +++++|+++|+|-+++ + +. .-.+.+| ++. --|++|. |
T Consensus 232 ~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t--~sK~lg~-G~ 306 (465)
T 2yky_A 232 HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLTT--LGKYIGG-GM 306 (465)
Confidence 46777777665444797665 2 4568999999999999 5 22 1122222 443 4599975 5
Q ss_pred -cEEEEEchhHHhhhCCC--CCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 335 -ITVVIVREDLLEYALPI--TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 335 -lg~livr~~ll~~~~~~--~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
+|+++.++++++.+.+. .+ + ...++++ .|....++..++|+.+.+. .+.++.+++.+++++.|+
T Consensus 307 piG~v~~~~~i~~~l~~~~~g~-~-------~~~~T~~-~npla~aAa~aaL~~l~~~----~~~~~~~~~~~~l~~~L~ 373 (465)
T 2yky_A 307 SFGAFGGRRDLMERFDPARDGA-F-------AHAGTFN-NNILTMSAGHAALTQIYTR----QAASDLSASGDRFRANLN 373 (465)
Confidence 78899999988765431 11 0 0123333 3344556666788888764 466777788888888887
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 374 ~~ 375 (465)
T 2yky_A 374 RI 375 (465)
Confidence 65
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=8.3e-05 Score=81.20 Aligned_cols=283 Identities=12% Similarity=0.095 Sum_probs=147.8
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc---cHHHHHHH-HHHHHHHHHHhCCCCC-CEEEEEcCCcc
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR---SADYTKIN-NDTQAALRELLNVPNN-YKILFLQGGGT 125 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr---s~~f~~i~-~~ar~~La~Ll~~p~~-yeI~f~~gggT 125 (621)
....+.|.=--.++.|++++...|++-...|.. .+| +-++.+.+ .-|+++.++|||+... +-|=.-+-||+
T Consensus 55 ~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyP----g~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs 130 (490)
T 3ou5_A 55 RGLELIASENFCSRAALEALGSCLNNKYSEGYP----GKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS 130 (490)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGTCCCCC--------------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred cCceEecCCCcCCHHHHHHhcCcccccccCCCC----CccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHH
Confidence 457888888899999999999999885555532 333 44455444 4567899999999653 21222345666
Q ss_pred hhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccc
Q psy8733 126 GMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKY 205 (621)
Q Consensus 126 ~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~ 205 (621)
. .|+.++..=+++||.|+-+. | ..| |+.+|...-...+.+..-.....
T Consensus 131 ~------AN~avy~All~PGD~ilg~~-------------l-~~G--------GHltHg~~~~~~~v~~sg~~~~~---- 178 (490)
T 3ou5_A 131 P------ANLAVYTALLQPHDRIMGLD-------------L-PDG--------GHLTHGYMSDVKRISATSIFFES---- 178 (490)
T ss_dssp H------HHHHHHHHHCC-CCCEECBC-----------------------------------------------------
T ss_pred H------HHHHHHHHHcCCCCEEEecc-------------c-CCC--------CcccccccCCCcccccccccccc----
Confidence 6 35544433356666665543 1 122 22222111000011000000000
Q ss_pred cccCCCCCC-CCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccc
Q psy8733 206 VSIPDQSTW-NRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNET 284 (621)
Q Consensus 206 ~~~~~~~~~-~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET 284 (621)
..... .+.-.+| -++ .+++....++|+|.+-..-.
T Consensus 179 ----~~Y~vd~~t~~ID-------------------yd~---------------------~~~~A~~~kPklIi~G~SaY 214 (490)
T 3ou5_A 179 ----MPYKLNPKTGLID-------------------YNQ---------------------LALTARLFRPRLIIAGTSAY 214 (490)
T ss_dssp -----CBCEETTTTEEC-------------------HHH---------------------HHHHHHHHCCSEEEECCSSC
T ss_pred ----cccccCCCCCccc-------------------HHH---------------------HHHHHhhcCCCeEEECCccC
Confidence 00000 0000000 001 11122334577776655433
Q ss_pred cccccccc-----ccccCCCcEEEeccccc-----CCCcccccccceEEecccccc-CCCccEEEEEchhHHhhhCCCCC
Q psy8733 285 VDGVEFNY-----IPDSQGIPLVSDMSSNF-----LSRKFDVSKFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITP 353 (621)
Q Consensus 285 ~tGv~~p~-----i~~~~g~llvvDavSs~-----G~~pIDv~~~gvl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P 353 (621)
+ -..|. |+++.|+.+++||+.-. |..|=++...|++.++.||.| ||.| |++..+++... ..+...
T Consensus 215 ~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~-~~~k~~ 290 (490)
T 3ou5_A 215 A--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS-GLIFYRKGVKA-VDPKTG 290 (490)
T ss_dssp C--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCSCSC-EEEEEECSEEE-ECC--C
T ss_pred c--cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccCCCc-eEEEecccccc-cccccc
Confidence 2 22232 56678999999998753 344555556789999999999 8997 55555554311 111111
Q ss_pred c--eeecccccc---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 354 T--VFHFKINAD---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 354 ~--~ld~~~~~~---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
. ..++....+ -+..-+-|-...|.+++.++...... ......++..+.++.|-+.|.+.| +.+.
T Consensus 291 ~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p-~fk~Ya~qVv~NAkaLA~~L~~~G-~~vv 359 (490)
T 3ou5_A 291 REIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP-MFREYSLQVLKNARAMADALLERG-YSLV 359 (490)
T ss_dssp CEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHTT-CEEG
T ss_pred chhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHhCC-Ceee
Confidence 0 111211111 13445678888999999988876554 356778888888888888888875 5443
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0009 Score=73.39 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=72.8
Q ss_pred ccccCCCcEEEecccccCCCccc---cc-----ccceEEeccccccC-CCccEEEEEch-hHHhhhCCCCCceeeccccc
Q psy8733 293 IPDSQGIPLVSDMSSNFLSRKFD---VS-----KFGVIIAGAQKNIG-PAGITVVIVRE-DLLEYALPITPTVFHFKINA 362 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~pID---v~-----~~gvl~asaqK~lG-P~Glg~livr~-~ll~~~~~~~P~~ld~~~~~ 362 (621)
+++++|++++||.+-.+-...++ .+ +.|+++.|+||++. |-|-++++.++ ++++++...
T Consensus 241 Ich~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~----------- 309 (501)
T 3hl2_A 241 ICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKM----------- 309 (501)
T ss_dssp HHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHT-----------
T ss_pred HHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHHh-----------
Confidence 45689999999965433221111 11 25689999999996 87877776664 455544221
Q ss_pred cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 363 DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 363 ~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
.++|.+.+..+.+-.++..+-.. |+.++.++..+++++|++.|.++.
T Consensus 310 ----yPGr~S~Spsldl~~tLL~lGr~-Gy~~ll~e~~ela~~L~~~L~~la 356 (501)
T 3hl2_A 310 ----YPGRASASPSLDVLITLLSLGSN-GYKKLLKERKEMFSYLSNQIKKLS 356 (501)
T ss_dssp ----SCSCBCSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12444455566566667777666 899999999999999999999864
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.45 E-value=4.9e-05 Score=77.91 Aligned_cols=97 Identities=21% Similarity=0.307 Sum_probs=77.7
Q ss_pred HHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC------CCceee---eeecccCCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI------TPTVFH---FKINADNNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~------~p~~~~---y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|++.+|.+|.+| |+|+++++++++++++..+. .+..++ |......++++.|||++.++.+...++|+.+
T Consensus 182 ~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 261 (362)
T 3ffr_A 182 IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQ 261 (362)
T ss_dssp CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHH
Confidence 5788899999999 99999999999997653321 122222 2223445777999999999999999999988
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCc
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKF 546 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~ 546 (621)
.| ++.+.++.++.++.+++.|++.+++
T Consensus 262 ~~-~~~~~~~~~~~~~~l~~~L~~~~g~ 288 (362)
T 3ffr_A 262 IS-ADGIRKQTEEKAALINTYIESSKVF 288 (362)
T ss_dssp HC-HHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred cc-HHHHHHHHHHHHHHHHHHHHHccCc
Confidence 76 9999999999999999999887654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00024 Score=74.86 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=122.9
Q ss_pred HHHHHhhcccccccC-CcEEeeecHhHhhhcC------CCCCceeeeeeccc---CCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIGPA-GITVVIVREDLLEYAL------PITPTVFHFKINAD---NNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~Gpa-Gl~v~iv~~~~l~~~~------~~~p~~~~y~~~~~---~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|++.+|.+|.+|+. |+++++++++++++.. +..|..+++....+ .+.+++|||++.++.+...|+++.+
T Consensus 213 ~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~ 292 (398)
T 2fyf_A 213 TDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVG 292 (398)
T ss_dssp CSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 567788999999977 6999999999987531 22344444432222 2578899999999999999999998
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCcccccC--C--CCC---------c-ccHHHHHHHHHccCccccCCCCC--Ccc
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPV--Q--AGF---------P-LDELFLKEAKAHNMIQLKGHRLV--GGI 582 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v--~--~~~---------~-~~~~~~~~~~~~~i~~~~g~~~~--~~~ 582 (621)
.|+++.+.++.+++++.+++.|++.+++ .... . ... . -..+|.+.+.++||....||+.. +.|
T Consensus 293 ~g~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~i 371 (398)
T 2fyf_A 293 NGGLDWAVKRTADSSQRLYSWAQERPYT-TPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQL 371 (398)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHSTTE-EESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTTTCSSEE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHcCCc-eeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCcccCCCCEE
Confidence 9999999999999999999999887543 2211 1 111 1 23568899999999988888763 459
Q ss_pred ceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 583 RASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 583 r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
|++.-+.++.||++++++.|+++.++
T Consensus 372 Ris~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 372 RVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987653
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0067 Score=64.99 Aligned_cols=133 Identities=11% Similarity=0.167 Sum_probs=78.8
Q ss_pred CCceEEEEecc-cccccccccc--------ccccCCCcEEEecccc-cCCCc-------c-cc-cccc--eEEecccccc
Q psy8733 272 PEASYLYYCDN-ETVDGVEFNY--------IPDSQGIPLVSDMSSN-FLSRK-------F-DV-SKFG--VIIAGAQKNI 330 (621)
Q Consensus 272 ~~t~~V~~thn-ET~tGv~~p~--------i~~~~g~llvvDavSs-~G~~p-------I-Dv-~~~g--vl~asaqK~l 330 (621)
++++++.++.+ .|.||...+. +++++++++|.|-+-. +.... + .+ +..+ +++.|-=|.+
T Consensus 172 ~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 251 (405)
T 3k7y_A 172 PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNM 251 (405)
T ss_dssp CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTS
T ss_pred CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccC
Confidence 45677777654 6999999884 3457899999996532 32111 1 11 1123 7788999999
Q ss_pred CCCc--cEEEEE---chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH------HHhhCCHHHHHHHH
Q psy8733 331 GPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW------IKRQGGLAKMEQNS 399 (621)
Q Consensus 331 GP~G--lg~liv---r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~------i~~~gGl~~i~~r~ 399 (621)
|.+| +|.+++ ++++.+++... .... ....+..||.++..++..+|+. ..+. +..+.++.
T Consensus 252 ~l~GlRiG~~~~~~~~~~~~~~~~~~------l~~~--~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~--l~~~~~~~ 321 (405)
T 3k7y_A 252 SLYGERAGALHIVCKNQEEKKIVFNN------LCFI--VRKFYSSPVIHTNRILCQLLNNQNLKLNWIKE--LSQLSQRI 321 (405)
T ss_dssp CCTTTTEEEEEEECSSHHHHHHHHHH------HHHH--HHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHH--HHHHHHHH
T ss_pred CCccccceEEEEEeCCHHHHHHHHHH------HHHH--HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHH
Confidence 9888 577653 45554432110 0000 0122345555555555555532 1122 56777888
Q ss_pred HHHHHHHHHHHH----ccC
Q psy8733 400 LQKSVLLYQEID----NSD 414 (621)
Q Consensus 400 ~~la~~L~e~L~----~~~ 414 (621)
+++.+.+++.|+ +++
T Consensus 322 ~~~R~~l~~~L~~~~~~~g 340 (405)
T 3k7y_A 322 TNNRILFFNKLETYQKKYN 340 (405)
T ss_dssp HHHHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHHHHHhhhhhcC
Confidence 888999999998 764
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.004 Score=67.79 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=77.4
Q ss_pred CceEEEEeccccccccccc----c-----ccccCCCcEEEecccc-cCCCc--ccccc------cceEEeccccc-cCCC
Q psy8733 273 EASYLYYCDNETVDGVEFN----Y-----IPDSQGIPLVSDMSSN-FLSRK--FDVSK------FGVIIAGAQKN-IGPA 333 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p----~-----i~~~~g~llvvDavSs-~G~~p--IDv~~------~gvl~asaqK~-lGP~ 333 (621)
++++|.+.++.+.+|+..| + +++++|+++|+|.+|+ +|... +.++. .|++.+| |. +|
T Consensus 258 ~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~-- 333 (472)
T 1ohv_A 258 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT-- 333 (472)
T ss_dssp CEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS--
T ss_pred CEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEc--ccccc--
Confidence 6888888777777898766 2 4568999999999998 55432 34444 3456555 98 55
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
| |+++ ++++. +..+ ....++++ .|..+.+++.++|+.+.+. + +.++.+++.++|++.|+++
T Consensus 334 G-G~~~-~~~~~----~~~~--------~~~~~T~~-~~~~~~aaa~aal~~~~~~-~---~~~~~~~~~~~l~~~L~~l 394 (472)
T 1ohv_A 334 G-GFFH-KEEFR----PNAP--------YRIFNTWL-GDPSKNLLLAEVINIIKRE-D---LLSNAAHAGKVLLTGLLDL 394 (472)
T ss_dssp E-EEEE-CGGGS----CSSS--------SSSCCSSS-SCHHHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHHH
T ss_pred C-CccC-chhhc----cccc--------ccccCccC-ccHHHHHHHHHHHHHHHhC-C---HHHHHHHHHHHHHHHHHHH
Confidence 3 5554 65531 1111 01123332 3455677777999998775 3 5677888888899888775
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0012 Score=69.13 Aligned_cols=159 Identities=10% Similarity=0.033 Sum_probs=115.4
Q ss_pred hhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC--CCceeeeeec--------ccCCCccCCCchhHHHHHHHHHHH
Q psy8733 447 FFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI--TPTVFHFKIN--------ADNNSVYNTPPTFVVHVIQRVFAW 515 (621)
Q Consensus 447 ~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~--~p~~~~y~~~--------~~~~s~~nTP~~~~iy~~~~vl~~ 515 (621)
+..|++++|.||.+| |.|+++++++++++++..+. .+..+++... ....+...|||+..++.+...|++
T Consensus 188 ~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~ 267 (379)
T 3ke3_A 188 LGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILE 267 (379)
T ss_dssp HTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHH
T ss_pred cCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHH
Confidence 356889999999996 89999999999998765431 2223321110 111223369999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCC---CC--------cccHHHHHHHHHccCccccCCCC------
Q psy8733 516 IKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA---GF--------PLDELFLKEAKAHNMIQLKGHRL------ 578 (621)
Q Consensus 516 ~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~---~~--------~~~~~~~~~~~~~~i~~~~g~~~------ 578 (621)
+.+. |++.+.++.+++++.+++.+++.. +- ....+ .. .....+.+.++++||....|+..
T Consensus 268 ~~~~-g~~~~~~~~~~l~~~l~~~l~~~g-~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~Gi~v~~g~~~~~~~~~ 344 (379)
T 3ke3_A 268 AKEI-GFDILRDAQWELGNRVRKVLTDKG-IE-SVAAEGFEAPGVVVSYTERDDMHKGSAFAEAGLQIAAGVPLKVGEPD 344 (379)
T ss_dssp HHHH-CHHHHHHHHHHHHHHHHHHHHHTT-CC-BSBCTTCBCSSEEEEECSCHHHHSSHHHHHTTCCCEECCCCSSCCCT
T ss_pred HHHh-cHHHHHHHHHHHHHHHHHHHHHcC-CE-ecCCccccCceEEEEccCCcchHHHHHHHHCCeEEeCCccccccccC
Confidence 9877 599999999999999999998752 21 11111 10 11112367788999987766531
Q ss_pred -CCccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 579 -VGGIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 579 -~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
.+.||++....+|.||++++++.|++..++
T Consensus 345 ~~~~lRis~~~~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 345 NFKTFRLGLFGLDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp TCCEEEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence 466999999899999999999999887664
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0011 Score=68.48 Aligned_cols=158 Identities=19% Similarity=0.209 Sum_probs=120.2
Q ss_pred HHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC-CCc-eeeeeec---ccCCCccCCCchhHHHHHHHHHHHHHhcCCh
Q psy8733 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI-TPT-VFHFKIN---ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGL 522 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~-~p~-~~~y~~~---~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~ 522 (621)
.|++..|.+|.+| |.|+++++++++++++..+. .+. .+++... ....++.+||++..++.+...++|+.+.||+
T Consensus 197 ~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 276 (376)
T 3f0h_A 197 ADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGA 276 (376)
T ss_dssp CSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHH
T ss_pred ccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 4688899999999 99999999999998764331 222 2222221 2235678899999999999999999999899
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCcccccCCC----------CCcccHHHHHHHHHc-cCccccCCCC--CCccceeeccC
Q psy8733 523 AKMEQNSLQKSVLLYQEIDNSDKFYECPVQA----------GFPLDELFLKEAKAH-NMIQLKGHRL--VGGIRASIYNA 589 (621)
Q Consensus 523 ~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~----------~~~~~~~~~~~~~~~-~i~~~~g~~~--~~~~r~~~~~a 589 (621)
+.+.++.++.++.+++.+++.. + ...... ......+|.+.+.++ ||....|++. .+.||++..+.
T Consensus 277 ~~~~~~~~~~~~~l~~~L~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~ 354 (376)
T 3f0h_A 277 DAEVARIASQAADFRAKIKDLP-F-ELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGA 354 (376)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSS-E-EECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-C-ccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCC
Confidence 9999999999999999998753 1 111000 111235688888888 9997776643 56799999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy8733 590 ITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 590 ~~~~~~~~l~~~~~~~~~~ 608 (621)
+|.||++++++.|+++.++
T Consensus 355 ~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 355 LTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp CCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.086 Score=57.49 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=75.5
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCC---Ccccccccc----eEEeccccccC-CCcc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLS---RKFDVSKFG----VIIAGAQKNIG-PAGI 335 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~---~pIDv~~~g----vl~asaqK~lG-P~Gl 335 (621)
+..+|.+=......|+..|- +++++|+++|+|=+|+=.. .-.-.+.+| +++.| |.+| --=+
T Consensus 226 ~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~ 303 (456)
T 4atq_A 226 QVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPL 303 (456)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSC
T ss_pred ceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhh--hcccCcCCc
Confidence 44555544444445666552 4568999999999998422 223334444 66666 7783 2237
Q ss_pred EEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|.+..++++.+...+ . ...++|+--|+ +..+..++|+.+.++ ++ .++.+++.+++++.|.++
T Consensus 304 ~av~~~~~i~~~~~~---~--------~~~~Tf~gnpl-a~aaala~L~~i~~~-~l---~~~~~~~g~~l~~~L~~l 365 (456)
T 4atq_A 304 SAITGRADLLDAVHP---G--------GLGGTYGGNPV-ACAAALAAIDTMEQH-DL---NGRARHIEELALGKLREL 365 (456)
T ss_dssp EEEEEEHHHHTTSCT---T--------SSCCSSSSCHH-HHHHHHHHHHHHHHT-TH---HHHHHHHHHHHHHHHHHH
T ss_pred eeeEecHHHHhcccc---c--------CCCCCCCCChH-HHHhhHHHHHHHhhc-cH---HHHHHHHHHHHHHHHHHH
Confidence 889999998765432 1 12456654444 455666789999887 43 445566666676666654
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.31 Score=53.31 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=79.6
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccCCC---cccccccc----eEEecccccc--CCCc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFLSR---KFDVSKFG----VIIAGAQKNI--GPAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G~~---pIDv~~~g----vl~asaqK~l--GP~G 334 (621)
++.+|.+=......|++.|- +++++|+++|+|=+|+=..+ -+-.+.+| +++.+ |.+ |--=
T Consensus 236 ~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG~~P 313 (473)
T 4e3q_A 236 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISS--KNLTAGFFP 313 (473)
T ss_dssp GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEEC--GGGGTTSSC
T ss_pred ceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhc--ccccCCCCC
Confidence 45555554444555777662 45689999999999984322 22223343 66655 888 3234
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+|.+.+++++.+.+.+... .+ .....+++|+--| .+..+..++|+.+.++ + +.++.+++.++|++.|+++
T Consensus 314 l~av~~~~~i~~~~~~~~~---~~-~~~~hg~T~~Gnp-la~Aaala~L~~i~~~-~---l~~~~~~~g~~l~~~L~~l 383 (473)
T 4e3q_A 314 MGAVILGPELSKRLETAIE---AI-EEFPHGFTASGHP-VGCAIALKAIDVVMNE-G---LAENVRRLAPRFEERLKHI 383 (473)
T ss_dssp CEEEEECHHHHHHHHHHHH---HH-SCCCCCCTTTTCH-HHHHHHHHHHHHHHHS-S---HHHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHhccccc---cc-cccccCCCCCCCc-chhhhhhhhhhhhccc-c---HHHHHHHHHHHHHHHHHHH
Confidence 8999999999876532100 00 0012345664434 4455566789999886 4 4456667788888888775
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.015 Score=61.04 Aligned_cols=142 Identities=14% Similarity=0.149 Sum_probs=92.6
Q ss_pred HHHhhcccccccCC--cEEeee---cHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHH---h-cCC
Q psy8733 451 VIIAGAQKNIGPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK---R-QGG 521 (621)
Q Consensus 451 ~~~a~~qk~~GpaG--l~v~iv---~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~---~-~gg 521 (621)
++..|..|.+|++| ++.+++ ++++++.-.. . .+. ....++++||.++.+++...|+... + ...
T Consensus 251 i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~---~---~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 322 (412)
T 1ajs_A 251 FCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLS---Q---MQK--IVRVTWSNPPAQGARIVARTLSDPELFHEWTGN 322 (412)
T ss_dssp EEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHH---H---HHH--HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHH
T ss_pred EEEEecccccCCCCcceEEEEEecCCHHHHHHHHH---H---HHH--HHhcccCCCChHHHHHHHHHHcCcchhHHHHHH
Confidence 34567789999999 678888 7875433100 0 011 1335778889999998888887542 0 124
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC---CcccccCCC-C----CcccHH-HHHHHHHccCccccCCCCCCccceeeccCCCH
Q psy8733 522 LAKMEQNSLQKSVLLYQEIDNSD---KFYECPVQA-G----FPLDEL-FLKEAKAHNMIQLKGHRLVGGIRASIYNAITV 592 (621)
Q Consensus 522 ~~~~~~~~~~ka~~lY~~id~~~---~~~~~~v~~-~----~~~~~~-~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~ 592 (621)
++.+.++.+++.+.+++.+++.. ++ ...... + ..+... +.+.++++|+....| +|++ |..++.
T Consensus 323 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~------~Ris-~~~~~~ 394 (412)
T 1ajs_A 323 VKTMADRILSMRSELRARLEALKTPGTW-NHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPS------GRIN-MCGLTT 394 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCC-HHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTT------SEEE-GGGCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCe-eEEcCCCceEEEeCCCHHHHHHHHHhCCEEecCC------cEEE-eeeCCH
Confidence 77888899999999999998743 11 111001 1 022344 455667889987643 7987 445699
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8733 593 DEAVILVKFMKEFRHK 608 (621)
Q Consensus 593 ~~~~~l~~~~~~~~~~ 608 (621)
|+++.+++-|+++.++
T Consensus 395 ~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 395 KNLDYVATSIHEAVTK 410 (412)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887653
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.017 Score=58.93 Aligned_cols=130 Identities=9% Similarity=0.064 Sum_probs=87.6
Q ss_pred HHHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 451 VIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 451 ~~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
++..|..|.+|++| ++.++.+++++++..+ .. +. .|+|.++.+.+...|+.. ..++.+.++
T Consensus 195 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~----------~~---~~-~~~~~~~~~~~~~~l~~~---~~~~~~~~~ 257 (335)
T 1uu1_A 195 AVIRTFSKAFSLAAQRVGYVVASEKFIDAYNR----------VR---LP-FNVSYVSQMFAKVALDHR---EIFEERTKF 257 (335)
T ss_dssp EEEEESTTTTTCGGGCCEEEEECHHHHHHHHH----------HS---CT-TCSCHHHHHHHHHHHHTH---HHHHHHHHH
T ss_pred EEEecchhhcCCcccCeEEEEeCHHHHHHHHH----------hc---CC-CCcCHHHHHHHHHHhCCH---HHHHHHHHH
Confidence 44567789999888 6999999998765321 11 12 378889888887777642 247778888
Q ss_pred HHHHHHHHHHHHhccCCcccccCCC-------CCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHH
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQA-------GFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKF 601 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~-------~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~ 601 (621)
.+++.+.+.+.+++. ++...+-.- ......+|.+.+.++||.... ..+.||++. .+.+|++++++-
T Consensus 258 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~---~~~~iRis~---~~~~~i~~~~~~ 330 (335)
T 1uu1_A 258 IVEERERMKSALREM-GYRITDSRGNFVFVFMEKEEKERLLEHLRTKNVAVRS---FREGVRITI---GKREENDMILRE 330 (335)
T ss_dssp HHHHHHHHHHHHHHH-TCCBCCCCSSEEEEECCTHHHHHHHHHHHHHTEEEEE---ETTEEEEEC---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CcEEcCCCCeEEEEECCCCCHHHHHHHHHHCCEEEEE---CCCeEEEEe---CCHHHHHHHHHH
Confidence 889999999999875 321111000 001234588888899998665 246699995 246788888887
Q ss_pred HHH
Q psy8733 602 MKE 604 (621)
Q Consensus 602 ~~~ 604 (621)
|++
T Consensus 331 l~~ 333 (335)
T 1uu1_A 331 LEV 333 (335)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.018 Score=59.34 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=117.0
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC--CCceeeeeec---cc-CCCccCCCchhHHHHHHHHHHHHHhcC
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI--TPTVFHFKIN---AD-NNSVYNTPPTFVVHVIQRVFAWIKRQG 520 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~--~p~~~~y~~~---~~-~~s~~nTP~~~~iy~~~~vl~~~~~~g 520 (621)
..|++..|..|.+| |.|+++++++++++++..+. ....+++... .. ......|||.+..+.+...|+++.+.|
T Consensus 198 ~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g 277 (386)
T 2dr1_A 198 GLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMG 277 (386)
T ss_dssp TCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 35788899999998 66999999999998764321 1111122111 11 234456899999999999999998888
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccCCcccccCCC-------------CCcccHHHHHHHHHccCccccCCCC--CCcccee
Q psy8733 521 GLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA-------------GFPLDELFLKEAKAHNMIQLKGHRL--VGGIRAS 585 (621)
Q Consensus 521 g~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~-------------~~~~~~~~~~~~~~~~i~~~~g~~~--~~~~r~~ 585 (621)
|++.+.++.+++++.+++.+++. ++ .....+ ......+|.+.+.++||....|+.. .+.||++
T Consensus 278 ~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~ 355 (386)
T 2dr1_A 278 GKEKWLEMYEKRAKMVREGVREI-GL-DILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIG 355 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT-TC-CBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CC-eeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEE
Confidence 99999999999999999999875 32 111110 0012456888999999987766643 5679999
Q ss_pred eccCCCHHHHHHHHHHHHHHHHH
Q psy8733 586 IYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 586 ~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
.-+.++.|+++.+++.|+++.++
T Consensus 356 ~~~~~~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 356 HMGYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887654
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.034 Score=57.48 Aligned_cols=157 Identities=15% Similarity=0.090 Sum_probs=113.6
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCc--e---------eeeeecccCCCccCCCchhHHHHHHHHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPT--V---------FHFKINADNNSVYNTPPTFVVHVIQRVFAWIK 517 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~--~---------~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~ 517 (621)
.|++..|.+|.+||.|+++++++++++++..+.... . ..|.... ....+.||+...+..+...++++.
T Consensus 217 ~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~al~~~~ 295 (406)
T 1kmj_A 217 CDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAP-WRFEAGTPNTGGIIGLGAALEYVS 295 (406)
T ss_dssp CSEEEEEGGGTTSCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTT-GGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEchhccCCCCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCc-hhccCCCCCHHHHHHHHHHHHHHH
Confidence 467778999999999999999999998775433210 0 0011100 122356899999988888999987
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHhccCCcccccCC--CCC-------c-ccHHHHHHHHHccCccccCC----------C
Q psy8733 518 RQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ--AGF-------P-LDELFLKEAKAHNMIQLKGH----------R 577 (621)
Q Consensus 518 ~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~--~~~-------~-~~~~~~~~~~~~~i~~~~g~----------~ 577 (621)
+. |++.+.++.+++.+.+++.+++.+++ ..... .+. . -..+|.+.++++||....|. +
T Consensus 296 ~~-~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g 373 (406)
T 1kmj_A 296 AL-GLNNIAEYEQNLMHYALSQLESVPDL-TLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_dssp HH-CHHHHHHHHHHHHHHHHHHHTTSTTE-EEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTT
T ss_pred Hc-CHHHHHHHHHHHHHHHHHHHhcCCCe-EEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcC
Confidence 54 69999999999999999999886543 21111 110 1 23458889999999876653 2
Q ss_pred CCCccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 578 LVGGIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 578 ~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
..+.||++.-..++.||++.|++.|+++.+.
T Consensus 374 ~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 374 VPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp CSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 3577999999889999999999999987654
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.015 Score=59.28 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=114.6
Q ss_pred HHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCC-Cceeeeeecc----c-CCCccCCCchhHHHHHHHHHHHHHhcCC
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT-PTVFHFKINA----D-NNSVYNTPPTFVVHVIQRVFAWIKRQGG 521 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~-p~~~~y~~~~----~-~~s~~nTP~~~~iy~~~~vl~~~~~~gg 521 (621)
.|++..|..|.+ ||.|+++++++++++++..+.. +..+++.... . .+....|||.+.++.+...|+++.+.||
T Consensus 184 ~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~ 263 (366)
T 1m32_A 184 IDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGG 263 (366)
T ss_dssp CSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTH
T ss_pred ccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccC
Confidence 567788899988 6999999999999987654321 1111110000 0 1222458999999999999999988888
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCcccccCC---C---------CC--c-ccHHHHHHHHHccCccccCCC-CCCcccee
Q psy8733 522 LAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ---A---------GF--P-LDELFLKEAKAHNMIQLKGHR-LVGGIRAS 585 (621)
Q Consensus 522 ~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~---~---------~~--~-~~~~~~~~~~~~~i~~~~g~~-~~~~~r~~ 585 (621)
++.+.++.+++++.+++.+++. ++ ..... . .. . ....|.+.+.++||....|+. ..+.||++
T Consensus 264 ~~~~~~~~~~~~~~l~~~L~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~ 341 (366)
T 1m32_A 264 VAARHQRYQQNQRSLVAGMRAL-GF-NTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIG 341 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TC-CBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEE
T ss_pred HhHHHHHHHHHHHHHHHHHHHC-CC-eeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEe
Confidence 9999999999999999999864 32 11110 0 01 1 235688899999998776654 36779999
Q ss_pred eccCCCHHHHHHHHHHHHHHHH
Q psy8733 586 IYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 586 ~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
.-..++.|+++.+++.|+++.+
T Consensus 342 ~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 342 NIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHHHH
Confidence 9988999999999999988754
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.035 Score=57.18 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=112.7
Q ss_pred HHHHHhhccc-ccccCCcEEeeecHhHhhhcCCCCC-----------ceeeeeecccCCCccCCCchhHHHHHHHHHHHH
Q psy8733 449 FGVIIAGAQK-NIGPAGITVVIVREDLLEYALPITP-----------TVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI 516 (621)
Q Consensus 449 ~~~~~a~~qk-~~GpaGl~v~iv~~~~l~~~~~~~p-----------~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~ 516 (621)
.|++..|.+| .+||.|+++++++++++++..+... .-++|.... ....+.|||...++.+...++++
T Consensus 211 ~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~al~~l 289 (390)
T 1elu_A 211 VDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGG-KRFEVATSAYPQYAGLLAALQLH 289 (390)
T ss_dssp CSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGG-GGGCCSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEccccccccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccch-HhhCCCCCCHHHHHHHHHHHHHH
Confidence 4677788999 6679999999999998876443211 011121111 12245789999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHhccCCcccc-cCC-CC--------Cc-ccHHHHHHHHHccCccccCCCCCCcccee
Q psy8733 517 KRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC-PVQ-AG--------FP-LDELFLKEAKAHNMIQLKGHRLVGGIRAS 585 (621)
Q Consensus 517 ~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~-~v~-~~--------~~-~~~~~~~~~~~~~i~~~~g~~~~~~~r~~ 585 (621)
.+.|.++.+.++.+++.+.+++.+++.+++-.. |.. .+ .. ...+|.+.+.++||....|. ..+.||++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~-~~~~iRis 368 (390)
T 1elu_A 290 QRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA-DPDCIRAC 368 (390)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEET-TTTEEEEE
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecC-CCCeEEEe
Confidence 888889999999999999999999876443111 100 10 11 23568888999999977765 34679999
Q ss_pred eccCCCHHHHHHHHHHHHHH
Q psy8733 586 IYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 586 ~~~a~~~~~~~~l~~~~~~~ 605 (621)
.-..++.|+++.+++.|+++
T Consensus 369 ~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 369 CHYITDEEEINHLLARLADF 388 (390)
T ss_dssp CCTTCCHHHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHHHhh
Confidence 87789999999999988754
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.023 Score=59.69 Aligned_cols=136 Identities=14% Similarity=0.156 Sum_probs=87.8
Q ss_pred HhhcccccccCCc--EEee--e-----cHh----HhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHH--
Q psy8733 453 IAGAQKNIGPAGI--TVVI--V-----RED----LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK-- 517 (621)
Q Consensus 453 ~a~~qk~~GpaGl--~v~i--v-----~~~----~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~-- 517 (621)
..|..|.+||+|+ +.++ . +++ +++.. +.. ...++.+||.+..+++...|+...
T Consensus 249 ~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l----------~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~ 316 (412)
T 1yaa_A 249 CQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQL----------AKI--IRSEVSNPPAYGAKIVAKLLETPELT 316 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHH----------HHH--HHTTTSSCCHHHHHHHHHHHHSHHHH
T ss_pred EeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHH----------HHH--HhhccCCCChHHHHHHHHHhCCHHHH
Confidence 4566899999995 6665 5 555 44431 111 234577889999988887776442
Q ss_pred h--cCChHHHHHHHHHHHHHHHHHHhccC---CcccccCCCC----CcccH-HHHHHHHHccCccccCCCCCCccceeec
Q psy8733 518 R--QGGLAKMEQNSLQKSVLLYQEIDNSD---KFYECPVQAG----FPLDE-LFLKEAKAHNMIQLKGHRLVGGIRASIY 587 (621)
Q Consensus 518 ~--~gg~~~~~~~~~~ka~~lY~~id~~~---~~~~~~v~~~----~~~~~-~~~~~~~~~~i~~~~g~~~~~~~r~~~~ 587 (621)
+ ...++.+.++.+++.+.+++.+++.. ++-..+-+.+ ..++. .+.+.++++||.... .+|++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~------~~Ris~- 389 (412)
T 1yaa_A 317 EQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVA------SGRASI- 389 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCT------TSEEEG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCHHHHHHHHHhCCEEecc------CcEEEE-
Confidence 0 12578888999999999999998643 1100000000 01223 355556678988654 589984
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q psy8733 588 NAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 588 ~a~~~~~~~~l~~~~~~~~~ 607 (621)
..++.|+++.+++-|+++.+
T Consensus 390 ~~~~~~~i~~~~~~l~~~~~ 409 (412)
T 1yaa_A 390 AGLNQGNVEYVAKAIDEVVR 409 (412)
T ss_dssp GGCCTTTHHHHHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHHH
Confidence 45699999999999988765
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.028 Score=58.21 Aligned_cols=159 Identities=15% Similarity=0.100 Sum_probs=113.5
Q ss_pred HHHHHhhccccc-ccCCcEEeeecHhHhhhcCCC----CCceee-------eeecccCCCccCCCchhHHHHHHHHHHHH
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVREDLLEYALPI----TPTVFH-------FKINADNNSVYNTPPTFVVHVIQRVFAWI 516 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~----~p~~~~-------y~~~~~~~s~~nTP~~~~iy~~~~vl~~~ 516 (621)
.|++..|.+|.+ ||+|+++++++++++++..+. .|.+++ |.........+.|||+..+..+...++|+
T Consensus 197 ~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 276 (393)
T 2huf_A 197 IDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMA 276 (393)
T ss_dssp CSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHH
T ss_pred ccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 577888999986 599999999999998764432 232222 11111234567899999999999999998
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHhccCCc--cc-----------ccCCCCCcccHHHHHHHHH-ccCccccCCC--CCC
Q psy8733 517 KRQGGLAKMEQNSLQKSVLLYQEIDNSDKF--YE-----------CPVQAGFPLDELFLKEAKA-HNMIQLKGHR--LVG 580 (621)
Q Consensus 517 ~~~gg~~~~~~~~~~ka~~lY~~id~~~~~--~~-----------~~v~~~~~~~~~~~~~~~~-~~i~~~~g~~--~~~ 580 (621)
.+. |++.+.++.+++.+.+++.|++. ++ +. ..+..+ ....+|.+.+.+ +||....|.. ..+
T Consensus 277 ~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~gi~v~~g~~~~~~~ 353 (393)
T 2huf_A 277 CEE-GLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVPQG-VDWLKAAQYAMKTYLVEISGGLGPTAGQ 353 (393)
T ss_dssp HHH-CHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECBCCCGGGTTT
T ss_pred HHh-CHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcCCC-CCHHHHHHHHHHhCCEEEecCcccccCC
Confidence 755 59999999999999999999864 22 11 111100 123457777765 5998776653 367
Q ss_pred ccceee-ccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 581 GIRASI-YNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 581 ~~r~~~-~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
.||++. ...++.|+++.+++.|+++.++..
T Consensus 354 ~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 354 VFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp EEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 799999 556789999999999999877643
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.067 Score=55.62 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=114.9
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCc----------eeeeeecccCCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPT----------VFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~----------~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
.|++..|.+|.+||.|+++++++++++++..+.... ...|.. ....-.+.||+...+..+...++++.+
T Consensus 222 ~di~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~al~~~~~ 300 (420)
T 1t3i_A 222 CDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGE-LPHKFEAGTPAIAEAIALGAAVDYLTD 300 (420)
T ss_dssp CSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECC-TTGGGCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEehhhhcCCCceEEEEEchHHHhhcCceecCCCccccccccccCCCC-chhhccCCCccHHHHHHHHHHHHHHHH
Confidence 467888999988999999999999998775432211 001111 001112568999888888888998875
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCcccc-cCC----CC--------CcccHHHHHHHHHccCccccCC---------
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC-PVQ----AG--------FPLDELFLKEAKAHNMIQLKGH--------- 576 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~-~v~----~~--------~~~~~~~~~~~~~~~i~~~~g~--------- 576 (621)
. |++.+.++.+++++.+++.+++.+++-.. +.. .+ ..-..+|.+.++++||....|+
T Consensus 301 ~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~ 379 (420)
T 1t3i_A 301 L-GMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRL 379 (420)
T ss_dssp H-CHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHh
Confidence 4 79999999999999999999886543211 110 11 0123458889999999987763
Q ss_pred -CCCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 577 -RLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 577 -~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
+..+.||++.-..++.|+++.+++.|+++.++.
T Consensus 380 ~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 380 FDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp TTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 335679999998899999999999999987754
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=94.61 E-value=0.018 Score=59.79 Aligned_cols=138 Identities=16% Similarity=0.224 Sum_probs=85.0
Q ss_pred HhhcccccccCC--cEEeee---cHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHH--Hh--cCChH
Q psy8733 453 IAGAQKNIGPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI--KR--QGGLA 523 (621)
Q Consensus 453 ~a~~qk~~GpaG--l~v~iv---~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~--~~--~gg~~ 523 (621)
..|..|.+|++| ++.+++ +++.++.... . .+. ...+++.+||.++.+++...|+.. ++ ...++
T Consensus 241 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~---~---~~~--~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~ 312 (396)
T 2q7w_A 241 ASSYSXNFGLYNERVGACTLVAADSETVDRAFS---Q---MKA--AIRANYSNPPAHGASVVATILSNDALRAIWEQELT 312 (396)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHH---H---HHH--HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred EEeccccccccccccceEEEEcCCHHHHHHHHH---H---HHH--HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHH
Confidence 456789999999 477776 6644332100 0 011 123567888999988887777532 10 12467
Q ss_pred HHHHHHHHHHHHHHHHHhccC---CcccccCCCC----Cccc-HHHHHHHHHccCccccCCCCCCccceeeccCCCHHHH
Q psy8733 524 KMEQNSLQKSVLLYQEIDNSD---KFYECPVQAG----FPLD-ELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEA 595 (621)
Q Consensus 524 ~~~~~~~~ka~~lY~~id~~~---~~~~~~v~~~----~~~~-~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~ 595 (621)
.+.++.+++.+.+++.+++.. ++-..+-+.+ .++. ..+.+.++++|+.... ++|++. ..++.|++
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~------~~Ris~-~~~~~e~i 385 (396)
T 2q7w_A 313 DMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVA------SGRVNV-AGMTPDNM 385 (396)
T ss_dssp HC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCT------TCEEEG-GGCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCCHHHHHHHHHhcCeeecC------CceEEE-eecCHHHH
Confidence 777888889999999988653 1110000101 1222 3456677788998765 379874 45699999
Q ss_pred HHHHHHHHHH
Q psy8733 596 VILVKFMKEF 605 (621)
Q Consensus 596 ~~l~~~~~~~ 605 (621)
+.+++.|++.
T Consensus 386 ~~~~~~l~~~ 395 (396)
T 2q7w_A 386 APLCEAIVAV 395 (396)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999888753
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.062 Score=54.25 Aligned_cols=156 Identities=12% Similarity=0.120 Sum_probs=111.3
Q ss_pred HHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCce-eee---eecccCCCccCCCchhHHHHHHHHHHHHHhcCChH
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTV-FHF---KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLA 523 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~-~~y---~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~ 523 (621)
.|++..|.+|.+ ||.|+++++++++++++... .|.. ++. ...........|||...++.+...++++.+. |++
T Consensus 177 ~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~ 254 (353)
T 2yrr_A 177 VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEE-GVA 254 (353)
T ss_dssp CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHH-CHH
T ss_pred ceEEEecCcccccCCCceEEEEECHHHHHHhcc-CCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHh-hHH
Confidence 367788889966 58999999999999876532 2211 110 0111123445699999999999999998765 599
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcccc-cCC-C--------CCc-ccHHHHHHHHHccCccccCC--CCCCccceeeccCC
Q psy8733 524 KMEQNSLQKSVLLYQEIDNSDKFYEC-PVQ-A--------GFP-LDELFLKEAKAHNMIQLKGH--RLVGGIRASIYNAI 590 (621)
Q Consensus 524 ~~~~~~~~ka~~lY~~id~~~~~~~~-~v~-~--------~~~-~~~~~~~~~~~~~i~~~~g~--~~~~~~r~~~~~a~ 590 (621)
.+.++.+++++.+++.+++. ++-.. +.. . ... -..+|.+.+.++||....|+ ...+.+|++..+.+
T Consensus 255 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~ 333 (353)
T 2yrr_A 255 ARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEG 333 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccC
Confidence 99999999999999999864 32111 100 0 011 23568889999999877665 33677999999999
Q ss_pred CHHHHH-HHHHHHHHHHH
Q psy8733 591 TVDEAV-ILVKFMKEFRH 607 (621)
Q Consensus 591 ~~~~~~-~l~~~~~~~~~ 607 (621)
+.+|++ .+++.|+++.+
T Consensus 334 ~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 334 ARREAYQAFLKALDRALA 351 (353)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999 99999988754
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.029 Score=57.72 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=110.1
Q ss_pred HHHHHhhcccccc-cCCcEEeeecHhHhh-hcCC-----C---C-------CceeeeeecccCCCccCCCchhHHHHHHH
Q psy8733 449 FGVIIAGAQKNIG-PAGITVVIVREDLLE-YALP-----I---T-------PTVFHFKINADNNSVYNTPPTFVVHVIQR 511 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paGl~v~iv~~~~l~-~~~~-----~---~-------p~~~~y~~~~~~~s~~nTP~~~~iy~~~~ 511 (621)
.|++..|.+|.++ |.|++++++++++++ +..+ . . |.+..|+ ...+.++.|||++.++.+..
T Consensus 192 ~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~ 269 (385)
T 2bkw_A 192 VDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYE--AGKGAYFATPPVQLINSLDV 269 (385)
T ss_dssp CSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHH--TTCCCCSSCCCHHHHHHHHH
T ss_pred ceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhh--ccCCCCCCCCCHHHHHHHHH
Confidence 4677889999885 999999999999887 4210 0 0 0000111 12344567999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHH-hccCCcccccCC----C-CC----cc--cHHHHHHHHHccCccccCCCC-
Q psy8733 512 VFAWIKRQGGLAKMEQNSLQKSVLLYQEI-DNSDKFYECPVQ----A-GF----PL--DELFLKEAKAHNMIQLKGHRL- 578 (621)
Q Consensus 512 vl~~~~~~gg~~~~~~~~~~ka~~lY~~i-d~~~~~~~~~v~----~-~~----~~--~~~~~~~~~~~~i~~~~g~~~- 578 (621)
.|+++.+. |++.+.++.+++++.+++.| ++. ++-..+.+ . .. .+ ..+|.+.+.++||....|+..
T Consensus 270 al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~ 347 (385)
T 2bkw_A 270 ALKEILEE-GLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKD 347 (385)
T ss_dssp HHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEECBCCCCTT
T ss_pred HHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCCHHHHHHHHHHCCeEEeCCCCcc
Confidence 99998765 69999999999999999999 764 33111101 0 10 11 456888899999998777642
Q ss_pred --CCccceeecc----CCCHHHHHHHHHHHHHHHH
Q psy8733 579 --VGGIRASIYN----AITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 579 --~~~~r~~~~~----a~~~~~~~~l~~~~~~~~~ 607 (621)
.+.+|++.|+ .++.||++.+++.|+++.+
T Consensus 348 ~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 348 IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHH
Confidence 4569999655 5799999999999988743
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.079 Score=54.80 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=111.8
Q ss_pred HHHHHhhcccccc-cCCcEEeeecHhHhhhcCC----CCCceee-------eeecccCCCccCCCchhHHHHHHHHHHHH
Q psy8733 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYALP----ITPTVFH-------FKINADNNSVYNTPPTFVVHVIQRVFAWI 516 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~----~~p~~~~-------y~~~~~~~s~~nTP~~~~iy~~~~vl~~~ 516 (621)
.|+++.|.+|.++ |.|++++++++++++.... .-+.+++ |.........+.|||...++.+...|+++
T Consensus 196 ~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 275 (396)
T 2ch1_A 196 IDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQI 275 (396)
T ss_dssp CCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred cCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHH
Confidence 3677889999886 8899999999998876422 1122221 11001124567899999999999999997
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHhccCCc--ccc------------cCCCCCcccHHHHHHHHH-ccCccccCCC--CC
Q psy8733 517 KRQGGLAKMEQNSLQKSVLLYQEIDNSDKF--YEC------------PVQAGFPLDELFLKEAKA-HNMIQLKGHR--LV 579 (621)
Q Consensus 517 ~~~gg~~~~~~~~~~ka~~lY~~id~~~~~--~~~------------~v~~~~~~~~~~~~~~~~-~~i~~~~g~~--~~ 579 (621)
.+. +++.+.++.+++++.+++.+++. ++ +.. .+.++ ....+|.+.+.+ +||....|+. ..
T Consensus 276 ~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~gi~v~~g~~~~~~ 352 (396)
T 2ch1_A 276 AEE-GLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKG-VDWWKVSQYAMNNFSLEVQGGLGPTFG 352 (396)
T ss_dssp HHH-CHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTT-CCHHHHHHHHHHHHCBCCBCCCGGGTT
T ss_pred HHh-hHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEEEcCCC-CCHHHHHHHHHHhCCEEEecCccccCC
Confidence 654 69999999999999999999875 32 110 01001 123457777766 4999877764 35
Q ss_pred Cccceee-ccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 580 GGIRASI-YNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 580 ~~~r~~~-~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
+.||++. ...++.|+++.+++.|+++.++..
T Consensus 353 ~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 353 KAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp TEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 6799999 457899999999999999887654
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.084 Score=54.53 Aligned_cols=160 Identities=11% Similarity=0.084 Sum_probs=115.0
Q ss_pred HHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCC--C--ceeeeeecc----cCCCccCCCchhHHHHHHHHHHHHHhc
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVREDLLEYALPIT--P--TVFHFKINA----DNNSVYNTPPTFVVHVIQRVFAWIKRQ 519 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~--p--~~~~y~~~~----~~~s~~nTP~~~~iy~~~~vl~~~~~~ 519 (621)
.|++..|.+|.+ ||.|+++++++++++++..+.. | ..+++.... .......|||...++.+...++++.+.
T Consensus 187 ~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~ 266 (392)
T 2z9v_A 187 ADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNE 266 (392)
T ss_dssp CSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 467888999976 5899999999999987543211 1 222222111 123456799999999999999998766
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCCcccccC-C----CC--------Cc-ccHHHHHHHHHc-cCccccCC--CCCCcc
Q psy8733 520 GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPV-Q----AG--------FP-LDELFLKEAKAH-NMIQLKGH--RLVGGI 582 (621)
Q Consensus 520 gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v-~----~~--------~~-~~~~~~~~~~~~-~i~~~~g~--~~~~~~ 582 (621)
|++.+.++.+++++.+++.|++. ++ .... . .. .. ...+|.+.+.++ ||....|+ ...+.|
T Consensus 267 -g~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~l 343 (392)
T 2z9v_A 267 -GPEAVWARHALTAKAMRAGVTAM-GL-SVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLT 343 (392)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHT-TC-CBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEE
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHc-CC-eeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeE
Confidence 49999999999999999999864 32 1110 1 00 01 235588888887 99977665 336779
Q ss_pred ceeecc-CCCHHHHHHHHHHHHHHHHHcCC
Q psy8733 583 RASIYN-AITVDEAVILVKFMKEFRHKHSR 611 (621)
Q Consensus 583 r~~~~~-a~~~~~~~~l~~~~~~~~~~~~~ 611 (621)
|++.++ .++.|+++.+++.|+++.++.+.
T Consensus 344 Ri~~~~~~~~~~~i~~~~~~l~~~~~~~~~ 373 (392)
T 2z9v_A 344 RIGHMGPTAQPIYAIAALTALGGAMNAAGR 373 (392)
T ss_dssp EEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHHHcCC
Confidence 999877 99999999999999998876653
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.052 Score=55.63 Aligned_cols=161 Identities=14% Similarity=0.188 Sum_probs=117.2
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhc-CCCC--Cceee---eeecccC----CCcc-CCCchhHHHHHHHHHHH
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYA-LPIT--PTVFH---FKINADN----NSVY-NTPPTFVVHVIQRVFAW 515 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~-~~~~--p~~~~---y~~~~~~----~s~~-nTP~~~~iy~~~~vl~~ 515 (621)
..|++..|.+|.+| |.|+++++++++++++. .+.. +..++ +...... .+++ .|||+..++.+...+++
T Consensus 179 ~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~ 258 (384)
T 3zrp_A 179 NVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRL 258 (384)
T ss_dssp TCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHH
Confidence 35778889999995 99999999999998764 2211 11111 1111111 3334 49999999999999998
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhccCCcccccCC-----C-------CCcccHHHHHHHHHccCccccCC-CCCCcc
Q psy8733 516 IKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ-----A-------GFPLDELFLKEAKAHNMIQLKGH-RLVGGI 582 (621)
Q Consensus 516 ~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~-----~-------~~~~~~~~~~~~~~~~i~~~~g~-~~~~~~ 582 (621)
+.+. |++.+.++.+++++.+++.|.+. ++-..+.+ . ......+|.+.+.++||....|+ ...+.|
T Consensus 259 ~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~i 336 (384)
T 3zrp_A 259 IEKE-GIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVILKVADPQKVLAGTVNEGVEFAPGVHPAFKYF 336 (384)
T ss_dssp HHHH-CHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTTTCCCEECCCTTCCEE
T ss_pred HHhc-CHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEECCCCCHHHHHHHHHHCCEEEecCCCCCcCEE
Confidence 8765 59999999999999999999876 32111111 0 01134568899999999977766 444779
Q ss_pred ceeeccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 583 RASIYNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 583 r~~~~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
|++.+..++.|+++.+++.|+++.++..
T Consensus 337 Ri~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 337 RIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999887764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.083 Score=55.26 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=111.6
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++..|.+|.+||.|++++++++++++...+.. .. .. ........|||.+.++.+...++++.+. ++.+.++
T Consensus 216 ~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~---~~-~~-~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~~~~~ 288 (423)
T 3lvm_A 216 VDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQM---HG-GG-HERGMRSGTLPVHQIVGMGEAYRIAKEE--MATEMER 288 (423)
T ss_dssp CSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSS---CS-SC-TTTTTCCSCCCHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCEEEechHHhcCCCCeEEEEEeccccCCCCccc---cC-Cc-ccccccCCCCCHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 5788889999999999999999998876533211 10 00 1223457799999999999999988764 8899999
Q ss_pred HHHHHHHHHHHHhccCCcccccCCC----C------Cc-ccHHHHHHHHHccCccccCCC--C-----------------
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQA----G------FP-LDELFLKEAKAHNMIQLKGHR--L----------------- 578 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~----~------~~-~~~~~~~~~~~~~i~~~~g~~--~----------------- 578 (621)
.+++.+.+++.|++.+++-...... . .. -...+.+.+++ +....|.. .
T Consensus 289 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~ 366 (423)
T 3lvm_A 289 LRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDE 366 (423)
T ss_dssp HHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCcc
Confidence 9999999999998776532211110 0 01 23446666655 44444421 1
Q ss_pred --CCccceeeccCCCHHHHHHHHHHHHHHHHHcCCCCc
Q psy8733 579 --VGGIRASIYNAITVDEAVILVKFMKEFRHKHSRLSA 614 (621)
Q Consensus 579 --~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~ 614 (621)
.+.||++..+.++.||++.+++.|+++.++..+.++
T Consensus 367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~ 404 (423)
T 3lvm_A 367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSP 404 (423)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTSSH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhccCc
Confidence 367999999999999999999999999887766654
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.063 Score=57.39 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=97.4
Q ss_pred HHHHHhhcccccccCC--cEEeee-cHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHH
Q psy8733 449 FGVIIAGAQKNIGPAG--ITVVIV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKM 525 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaG--l~v~iv-~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~ 525 (621)
.+++..|..|.+|++| ++.++. ++++++... . .....++ ++|.+..+.+...|+.....+.++.+
T Consensus 265 ~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~----------~-~~~~~~~-~~~~~~~~a~~~aL~~~~~~~~~~~~ 332 (447)
T 3b46_A 265 LTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAA----------K-AHTRICF-ASPSPLQEACANSINDALKIGYFEKM 332 (447)
T ss_dssp TEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHH----------H-HHHHHTS-SCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cEEEEecCchhcCCcchhhEEEEeCCHHHHHHHH----------H-HHhhccC-CCChHHHHHHHHHHhCCcchHHHHHH
Confidence 4566788899999888 899999 888876531 1 1112233 45677788888888776556678899
Q ss_pred HHHHHHHHHHHHHHHhccC--------Ccccc-cCCCC--------------CcccHHHHHHH-HHccCccccC--CCC-
Q psy8733 526 EQNSLQKSVLLYQEIDNSD--------KFYEC-PVQAG--------------FPLDELFLKEA-KAHNMIQLKG--HRL- 578 (621)
Q Consensus 526 ~~~~~~ka~~lY~~id~~~--------~~~~~-~v~~~--------------~~~~~~~~~~~-~~~~i~~~~g--~~~- 578 (621)
.++.+++.+.+.+.+++.. +||.. .+.+. .....+|.+.+ +++|+....| |..
T Consensus 333 ~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 412 (447)
T 3b46_A 333 RQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIK 412 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCG
T ss_pred HHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCC
Confidence 9999999999999998641 23221 11110 01233577666 4689986544 322
Q ss_pred ------CCccceeeccCCCHHHHHHHHHHHHHHH
Q psy8733 579 ------VGGIRASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 579 ------~~~~r~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
.+.||++.- .+.|+++..++-|+++.
T Consensus 413 ~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~~~ 444 (447)
T 3b46_A 413 EHEKAAENLLRFAVC--KDDAYLENAVERLKLLK 444 (447)
T ss_dssp GGGGGGTTEEEEECC--SCHHHHHHHHHHGGGGG
T ss_pred CccCCCCCEEEEEEe--CCHHHHHHHHHHHHHHH
Confidence 466999864 58999999888887753
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.048 Score=57.32 Aligned_cols=142 Identities=10% Similarity=0.036 Sum_probs=92.5
Q ss_pred HHHHhhcccccccCC--cEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 450 GVIIAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 450 ~~~~a~~qk~~GpaG--l~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
+++..|..|.+|++| ++.++.+++++++..+ + . ..+..++|.+..+.+...|+.. ...++.+.+
T Consensus 245 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~-------~----~-~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~ 310 (404)
T 2o1b_A 245 AIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKK-------Y----Q-THTNAGMFGALQDAAIYALNHY--DDFLEEQSN 310 (404)
T ss_dssp EEEEEESTTTTTCGGGCCEEEEECHHHHHHHHH-------H----H-HHHCCCCCHHHHHHHHHHHHHC--HHHHHHHHH
T ss_pred EEEEEecchhccCchhheEeEecCHHHHHHHHH-------H----H-hhccCCCCHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 456778899999777 5889999998865321 1 1 1123467888888777776643 235777888
Q ss_pred HHHHHHHHHHHHHhccC--------Ccccc-cCCCCCcccHHHHHHHH-HccCccccC--CCC--CCccceeeccCCCHH
Q psy8733 528 NSLQKSVLLYQEIDNSD--------KFYEC-PVQAGFPLDELFLKEAK-AHNMIQLKG--HRL--VGGIRASIYNAITVD 593 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~--------~~~~~-~v~~~~~~~~~~~~~~~-~~~i~~~~g--~~~--~~~~r~~~~~a~~~~ 593 (621)
+.+++.+.+.+.+++.. +||.. .+.++ ....+|.+.+. ++||....| ++. .+.||++.= .+.|
T Consensus 311 ~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~e 387 (404)
T 2o1b_A 311 VFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETPPG-YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLA--LDDQ 387 (404)
T ss_dssp HHHHHHHHHHHHHHHTTCCEECCCBSSEEEEECCTT-CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECC--SCTT
T ss_pred HHHHHHHHHHHHHHhcCCeecCCCcceEEEEeCCCC-CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEc--CCHH
Confidence 88899999999998641 22221 11111 11245777754 689987655 332 567999964 3788
Q ss_pred HHHHHHHHHHHHHHH
Q psy8733 594 EAVILVKFMKEFRHK 608 (621)
Q Consensus 594 ~~~~l~~~~~~~~~~ 608 (621)
+++.+++-|+++.++
T Consensus 388 ~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 388 KLDEAAIRLTELAYL 402 (404)
T ss_dssp HHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888877766544
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.099 Score=53.70 Aligned_cols=160 Identities=12% Similarity=0.120 Sum_probs=115.0
Q ss_pred HHHHHhhccccc-ccCCcEEeeecHhHhhhcCCC----CCceeeee-------ecccCCCccCCCchhHHHHHHHHHHHH
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVREDLLEYALPI----TPTVFHFK-------INADNNSVYNTPPTFVVHVIQRVFAWI 516 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~----~p~~~~y~-------~~~~~~s~~nTP~~~~iy~~~~vl~~~ 516 (621)
.|++..|.+|.+ |+.|+++++++++++++..+. .+..+++. ..........|||+..++.+...++++
T Consensus 201 ~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 280 (393)
T 3kgw_A 201 IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALI 280 (393)
T ss_dssp CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 467788899988 599999999999998764321 11111111 012234667899999999999999988
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHhccCCcccc-c-----------CC-CCCcccHHHHHHHHHc-cCccccCCCC--CC
Q psy8733 517 KRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC-P-----------VQ-AGFPLDELFLKEAKAH-NMIQLKGHRL--VG 580 (621)
Q Consensus 517 ~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~-~-----------v~-~~~~~~~~~~~~~~~~-~i~~~~g~~~--~~ 580 (621)
.+. |++.+.++.+++.+.+++.+++. ++-.. + +. +......+|.+.+.++ ||....|... .+
T Consensus 281 ~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~ 358 (393)
T 3kgw_A 281 AEQ-GLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEER 358 (393)
T ss_dssp HHH-CHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTT
T ss_pred HHh-hHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCC
Confidence 765 59999999999999999999876 32111 0 00 0011235688888777 9987776643 56
Q ss_pred ccceeecc-CCCHHHHHHHHHHHHHHHHHcC
Q psy8733 581 GIRASIYN-AITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 581 ~~r~~~~~-a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
.||++..+ .++.|+++.+++.|+++.++..
T Consensus 359 ~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 359 VLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp EEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 79999855 4699999999999999987764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.095 Score=53.06 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=113.2
Q ss_pred HHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCceeeee---ecccCCCccCCCchhHHHHHHHHHHHHHhcCChHH
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFK---INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAK 524 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~~~y~---~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~ 524 (621)
.|++..|.+|.+ ||.|+++++++++++++..+ -...++++ ..........|||.+.++.+...++++.+. ++.
T Consensus 176 ~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~--~~~ 252 (352)
T 1iug_A 176 VDAAASGSQKGLMCPPGLGFVALSPRALERLKP-RGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR--LEE 252 (352)
T ss_dssp CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC-CSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG--HHH
T ss_pred eeEEEecCcccccCCCceeEEEECHHHHHHhhC-CCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH--HHH
Confidence 567788999955 68999999999998866332 00111111 111224557799999999999999988754 889
Q ss_pred HHHHHHHHHHHHHHHHhccCCcccccCC--C--------CCc-ccHHHHHHHHHccCccccCCCC--CCccceeeccCCC
Q psy8733 525 MEQNSLQKSVLLYQEIDNSDKFYECPVQ--A--------GFP-LDELFLKEAKAHNMIQLKGHRL--VGGIRASIYNAIT 591 (621)
Q Consensus 525 ~~~~~~~ka~~lY~~id~~~~~~~~~v~--~--------~~~-~~~~~~~~~~~~~i~~~~g~~~--~~~~r~~~~~a~~ 591 (621)
+.++.+++.+.+++.+++. ++ ..... . ... -..+|.+.+.++||....|++. .+.||++.-..++
T Consensus 253 ~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~ 330 (352)
T 1iug_A 253 HLALKAWQNALLYGVGEEG-GL-RPVPKRFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYD 330 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TC-EESCSSBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHC-CC-cccccccCCeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCC
Confidence 9999999999999999874 32 11111 0 001 2356888899999987777643 5679999999899
Q ss_pred HHHHHHHHHHHHHHHHHc
Q psy8733 592 VDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 592 ~~~~~~l~~~~~~~~~~~ 609 (621)
.|+++.+++.|+++.++-
T Consensus 331 ~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 331 RYEALGVAGMFREVLEEI 348 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999887654
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.087 Score=53.66 Aligned_cols=156 Identities=8% Similarity=0.083 Sum_probs=113.5
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++..|.+|.+||.|+++++++++. ...|.+.. ..........|||.+.+..+...++++.+ +++.+.++
T Consensus 190 ~d~~~~s~~K~~g~~g~g~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~ 260 (382)
T 4hvk_A 190 ADMLTISSNDIYGPKGVGALWIRKEA-----KLQPVILG--GGQENGLRSGSENVPSIVGFGKAAEITAM--EWREEAER 260 (382)
T ss_dssp CSEEEEESGGGTSCTTCEEEEEETTC-----CCCCSSCS--SCTGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCEEEEeHHHhcCCCceEEEEEcCcc-----CcCccccc--CCCcCccccCCcCHHHHHHHHHHHHHHHh--hHHHHHHH
Confidence 46788899998899999999999876 11122211 11223455789999999999999998764 68999999
Q ss_pred HHHHHHHHHHHHhccCCcccccCCC-----------CCcccHHHHHHHHHccCccccCCCC-------------------
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQA-----------GFPLDELFLKEAKAHNMIQLKGHRL------------------- 578 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~-----------~~~~~~~~~~~~~~~~i~~~~g~~~------------------- 578 (621)
.++.++.+++.|.+.+++-...... .......|.+.++++||....|...
T Consensus 261 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~ 340 (382)
T 4hvk_A 261 LRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHE 340 (382)
T ss_dssp HHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChh
Confidence 9999999999998765432111110 0112356889999999997766411
Q ss_pred --CCccceeeccCCCHHHHHHHHHHHHHHHHHcCCCC
Q psy8733 579 --VGGIRASIYNAITVDEAVILVKFMKEFRHKHSRLS 613 (621)
Q Consensus 579 --~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~ 613 (621)
.+.||++.-+.++.||++.+++.|+++.++..+.+
T Consensus 341 ~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~~ 377 (382)
T 4hvk_A 341 EAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMS 377 (382)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 46799999999999999999999999887654433
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.12 Score=53.50 Aligned_cols=162 Identities=12% Similarity=-0.003 Sum_probs=114.6
Q ss_pred hHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCC---CCc-----------------eeeeeec----ccCCCccCCCc
Q psy8733 448 FFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPI---TPT-----------------VFHFKIN----ADNNSVYNTPP 502 (621)
Q Consensus 448 ~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~---~p~-----------------~~~y~~~----~~~~s~~nTP~ 502 (621)
..|++..+.+|.+ ||.|+++++++++++++..+. .|. .+++... ......+.|||
T Consensus 190 ~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (411)
T 3nnk_A 190 GLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEA 269 (411)
T ss_dssp TCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCC
T ss_pred CCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCC
Confidence 3577888999984 699999999999998653321 111 1111000 12345668999
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCCcccc-cCC-----------CCCcccHHHHHHHHHc-c
Q psy8733 503 TFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC-PVQ-----------AGFPLDELFLKEAKAH-N 569 (621)
Q Consensus 503 ~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~-~v~-----------~~~~~~~~~~~~~~~~-~ 569 (621)
+..++.+...++++.+. |++.+.++.++..+.+++.|++. ++-.. +.. +......++.+.+.++ |
T Consensus 270 ~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g 347 (411)
T 3nnk_A 270 TTALFGARECARLILQE-GLDYGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFG 347 (411)
T ss_dssp HHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99999999999998766 59999999999999999999875 22111 000 0011234577777665 9
Q ss_pred CccccCCCC--CCccceee-ccCCCHHHHHHHHHHHHHHHHHcCC
Q psy8733 570 MIQLKGHRL--VGGIRASI-YNAITVDEAVILVKFMKEFRHKHSR 611 (621)
Q Consensus 570 i~~~~g~~~--~~~~r~~~-~~a~~~~~~~~l~~~~~~~~~~~~~ 611 (621)
|....|++. .+.||++. -..++.|+++.+++.|+++.++.+.
T Consensus 348 i~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 392 (411)
T 3nnk_A 348 IEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLKF 392 (411)
T ss_dssp EEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 998777754 45699997 5567999999999999999887643
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.1 Score=53.37 Aligned_cols=153 Identities=7% Similarity=0.048 Sum_probs=109.8
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++..|.+|.+||.|+++++++++. + .-|.+..+. ........|||...++.+...++++.+ |++.+.++
T Consensus 190 ~di~~~s~sK~~g~~g~G~~~~~~~~--~---l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~al~~~~~--~~~~~~~~ 260 (382)
T 4eb5_A 190 ADMLTISSNDIYGPKGVGALWIRKEA--K---LQPVILGGG--QENGLRSGSENVPSIVGFGKAAEITAM--EWREEAER 260 (382)
T ss_dssp CSEEEEETGGGTCCSSCEEEEEETTC--C---CCCSSCSSC--TGGGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCEEEeehHHhcCCCceEEEEEcccc--c---cCceecCCC--ccccccCCCccHHHHHHHHHHHHHHHH--hHHHHHHH
Confidence 46777889999999999999999874 1 111111000 012345678999999999999998875 58899999
Q ss_pred HHHHHHHHHHHHhccCCcccccCCC----C--------CcccHHHHHHHHHccCccccCCC-------------------
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQA----G--------FPLDELFLKEAKAHNMIQLKGHR------------------- 577 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~~----~--------~~~~~~~~~~~~~~~i~~~~g~~------------------- 577 (621)
.+++++.+++.|++.+++ .....+ . ..-...|.+.+.++||....|+.
T Consensus 261 ~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~ 339 (382)
T 4eb5_A 261 LRRLRDRIIDNVLKIEES-YLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKH 339 (382)
T ss_dssp HHHHHHHHHHHHTTSTTE-EECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCH
T ss_pred HHHHHHHHHHHHhhCCCe-EEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCCh
Confidence 999999999999876543 111110 0 01234688888899999776642
Q ss_pred --CCCccceeeccCCCHHHHHHHHHHHHHHHHHcCC
Q psy8733 578 --LVGGIRASIYNAITVDEAVILVKFMKEFRHKHSR 611 (621)
Q Consensus 578 --~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~~ 611 (621)
..+.||++.-+.++.|+++.+++.|+++.++...
T Consensus 340 ~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 340 EEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp HHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1467999988889999999999999988765443
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.12 Score=53.71 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=114.2
Q ss_pred HHHHHhhccccc-ccCCcEEeeecHhHhhhcCCC----------------------CCceeeeeec----ccCCCccCCC
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVREDLLEYALPI----------------------TPTVFHFKIN----ADNNSVYNTP 501 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~----------------------~p~~~~y~~~----~~~~s~~nTP 501 (621)
.|++..+.+|.+ ||.|+++++++++++++..+. .+..++.... ......+.||
T Consensus 189 ~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (416)
T 3isl_A 189 IDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTE 268 (416)
T ss_dssp CSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCC
T ss_pred CCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCC
Confidence 577888999984 699999999999998764321 1111111110 1233457799
Q ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCCcccc-cCC-----------CCCcccHHHHHHHHHc-
Q psy8733 502 PTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC-PVQ-----------AGFPLDELFLKEAKAH- 568 (621)
Q Consensus 502 ~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~-~v~-----------~~~~~~~~~~~~~~~~- 568 (621)
|++.++.+...++++.+. |++.+.++.++.++.+++.|++. ++-.. +.. +......+|.+.+.++
T Consensus 269 ~~~~~~a~~~al~~~~~~-g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 346 (416)
T 3isl_A 269 ATTMLYALREGVRLVLEE-GLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQF 346 (416)
T ss_dssp CHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 999999999999988766 59999999999999999999874 32110 000 0111245688888776
Q ss_pred cCccccCCCC--CCccceeeccCCCHHH-HHHHHHHHHHHHHHcC
Q psy8733 569 NMIQLKGHRL--VGGIRASIYNAITVDE-AVILVKFMKEFRHKHS 610 (621)
Q Consensus 569 ~i~~~~g~~~--~~~~r~~~~~a~~~~~-~~~l~~~~~~~~~~~~ 610 (621)
||....|++. .+.||++..+..+.+| ++.+++.|+++.++.+
T Consensus 347 gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 347 GIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp CEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 9998887754 5669999977667766 9999999999988764
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.13 Score=53.15 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=91.4
Q ss_pred HHHHHhhcccccccCCcEEee-ecHhHhh-hcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVI-VREDLLE-YALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~i-v~~~~l~-~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
.|++..|.+|-+||.|+++++ ++++.+. ......|.+.. .. ........|||++.++.+...++++.+ +++.+.
T Consensus 211 ~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~ 286 (400)
T 3vax_A 211 IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFG-GG-QERKLRPGTLPVPLIMGLAEAAKIFEA--EHAQWQ 286 (400)
T ss_dssp CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSCS-SC-TGGGTSCSCCCHHHHHHHHHHHHHHHH--SHHHHH
T ss_pred CcEEEEeHHHhCCCCceEEEEEecchhccccccccCceecC-CC-ceeeeecCCCCHHHHHHHHHHHHHHHh--hHHHHH
Confidence 467788999988899999999 9984332 11222232221 11 223456789999999999999998875 689999
Q ss_pred HHHHHHHHHHHHHHhccCCcccccCCC-----------CCcccHHHHHHHHHccCccccCC----------------CC-
Q psy8733 527 QNSLQKSVLLYQEIDNSDKFYECPVQA-----------GFPLDELFLKEAKAHNMIQLKGH----------------RL- 578 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~~~~~~~v~~-----------~~~~~~~~~~~~~~~~i~~~~g~----------------~~- 578 (621)
++.+++.+.+++.|+ .+++-...-.. ...-.+.|.+.++ +||....|. +.
T Consensus 287 ~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~ 364 (400)
T 3vax_A 287 VAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLP 364 (400)
T ss_dssp HHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCC
Confidence 999999999999998 55432111010 0112356888888 999866552 11
Q ss_pred ----CCccceee-ccCCCHHHHHHHHHHHHHHHHH
Q psy8733 579 ----VGGIRASI-YNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 579 ----~~~~r~~~-~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
.+.||++. ...++.|+++.+++.|+++.++
T Consensus 365 ~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 365 EEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHHHTSEEEEEEEEC--------------------
T ss_pred ccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 37799999 9999999999999999887643
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.19 Score=51.33 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=106.3
Q ss_pred HHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
.|++..|.+|.+||+|++++++++++ ...+.+..+. ........|+|.+.++.+...|+++.+ +++.+.++
T Consensus 194 ~di~~~s~sK~~g~~G~G~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~ 264 (384)
T 1eg5_A 194 VDYASFSAHKFHGPKGVGITYIRKGV-----PIRPLIHGGG--QERGLRSGTQNVPGIVGAARAMEIAVE--ELSEAAKH 264 (384)
T ss_dssp CSEEEEEGGGGTSCTTCEEEEECTTS-----CCCCSBCSSC--TTTTTBCSCCCHHHHHHHHHHHHHHHH--THHHHHHH
T ss_pred CCEEEecHHHhcCCCceEEEEEcCCC-----ccccccccCc--ccccccCCCCChHHHHHHHHHHHHHHH--hHHHHHHH
Confidence 47788899999999999999999875 1112221111 011234568999999999999988654 68899999
Q ss_pred HHHHHHHHHHHHhccCCcccccCC-----CC------Cc-ccHHHHHHHHHccCccccCC--CC----------------
Q psy8733 529 SLQKSVLLYQEIDNSDKFYECPVQ-----AG------FP-LDELFLKEAKAHNMIQLKGH--RL---------------- 578 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~~v~-----~~------~~-~~~~~~~~~~~~~i~~~~g~--~~---------------- 578 (621)
.+++++.+++.|++ .++ ..... .. .. -...|.+.++++||....|. ..
T Consensus 265 ~~~~~~~l~~~L~~-~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~ 342 (384)
T 1eg5_A 265 MEKLRSKLVSGLMN-LGA-HIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDR 342 (384)
T ss_dssp HHHHHHHHHHHHHT-TTC-EECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCH
T ss_pred HHHHHHHHHHHhCC-CCe-EEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCCh
Confidence 99999999999987 443 11110 00 01 23568888999999977653 21
Q ss_pred ---CCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 579 ---VGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 579 ---~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
.+.||++.-+.++.||++.+++.|+++.++.
T Consensus 343 ~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 343 RIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp HHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred hhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2569999887899999999999999987654
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.14 Score=53.10 Aligned_cols=137 Identities=16% Similarity=0.150 Sum_probs=83.3
Q ss_pred HhhcccccccCC--cEEeee---cHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHH--Hh--cCChH
Q psy8733 453 IAGAQKNIGPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI--KR--QGGLA 523 (621)
Q Consensus 453 ~a~~qk~~GpaG--l~v~iv---~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~--~~--~gg~~ 523 (621)
..|.-|.+|++| ++.+++ +++++++... ..+ ....+++++||.++..++...++.- .+ .-.++
T Consensus 242 ~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 313 (397)
T 3fsl_A 242 SNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLG------QLK--ATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVE 313 (397)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHH------HHH--HHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred EecccccccCcCCCeeEEEEecCCHHHHHHHHH------HHH--HHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345559999888 455554 4555543210 001 0113567888888888877766531 10 12467
Q ss_pred HHHHHHHHHHHHHHHHHhccC---CcccccCCCC----CcccHH-HHHHHHHccCccccCCCCCCccceeeccCCCHHHH
Q psy8733 524 KMEQNSLQKSVLLYQEIDNSD---KFYECPVQAG----FPLDEL-FLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEA 595 (621)
Q Consensus 524 ~~~~~~~~ka~~lY~~id~~~---~~~~~~v~~~----~~~~~~-~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~ 595 (621)
.+.++.+++.+.+++.+++.. ++-..+.+.+ ..+... +.+.++++||....|- |++. ..++.|++
T Consensus 314 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~------Ris~-~~~~~~~i 386 (397)
T 3fsl_A 314 EMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASG------RMCV-AGLNTANV 386 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTC------EEEG-GGCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCCHHHHHHHHHhCCEEECCCC------eEEE-EecCHhhH
Confidence 788888999999999998753 2110000111 123333 5677788999877652 8854 56688889
Q ss_pred HHHHHHHHH
Q psy8733 596 VILVKFMKE 604 (621)
Q Consensus 596 ~~l~~~~~~ 604 (621)
+.+++-|++
T Consensus 387 ~~~~~~l~~ 395 (397)
T 3fsl_A 387 QRVAKAFAA 395 (397)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888875
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.19 Score=53.79 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=111.6
Q ss_pred hhHHHHHhhccccc--ccCCcEEeeecHhHhhhcCCCCCce--------------eeeeecccCCCccCCCchhHHHHHH
Q psy8733 447 FFFGVIIAGAQKNI--GPAGITVVIVREDLLEYALPITPTV--------------FHFKINADNNSVYNTPPTFVVHVIQ 510 (621)
Q Consensus 447 ~~~~~~~a~~qk~~--GpaGl~v~iv~~~~l~~~~~~~p~~--------------~~y~~~~~~~s~~nTP~~~~iy~~~ 510 (621)
...|++..|..|.+ ||.|++++++++++++...+..... +.|...+... ...|||++++..+.
T Consensus 265 ~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~a~~ 343 (465)
T 3e9k_A 265 WGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGF-RISNPPILLVCSLH 343 (465)
T ss_dssp HTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGG-CCSCCCHHHHHHHH
T ss_pred cCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHh-ccCCccHHHHHHHH
Confidence 34567778999999 7999999999999987643322110 1111111111 13499999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcc----------CCcc-cccCCC---CC----c---ccHHHHHHHHHcc
Q psy8733 511 RVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS----------DKFY-ECPVQA---GF----P---LDELFLKEAKAHN 569 (621)
Q Consensus 511 ~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~~----------~~~~-~~~v~~---~~----~---~~~~~~~~~~~~~ 569 (621)
..++++.+. |++.+.++..+..+.+++.+++. +++- ..|.+. +. + ....+.+.+.++|
T Consensus 344 aal~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~~~l~~~L~~~G 422 (465)
T 3e9k_A 344 ASLEIFKQA-TMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNKDVFQELEKRG 422 (465)
T ss_dssp HHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTTCCHHHHHHTTT
T ss_pred HHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCHHHHHHHHHHCC
Confidence 999999876 59999999999999999999874 3321 111110 10 1 1245788889999
Q ss_pred CccccCCCCCCccceee-ccCCCHHHHHHHHHHHHHHHHH
Q psy8733 570 MIQLKGHRLVGGIRASI-YNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 570 i~~~~g~~~~~~~r~~~-~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
|+.. ++..+.||++. -..++.||++.+++.|++..++
T Consensus 423 i~v~--~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 423 VVCD--KRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp EECE--EETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEEe--cCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 9864 44567899998 6788999999999999987653
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=92.22 E-value=0.59 Score=48.24 Aligned_cols=141 Identities=9% Similarity=-0.027 Sum_probs=90.6
Q ss_pred HhhcccccccCC--cEEeeec-HhHhhhcCCCCCceeeeeecccC-CCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 453 IAGAQKNIGPAG--ITVVIVR-EDLLEYALPITPTVFHFKINADN-NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 453 ~a~~qk~~GpaG--l~v~iv~-~~~l~~~~~~~p~~~~y~~~~~~-~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
..|..|.+|++| ++.++++ +++++... . ... ..++.|+|.++.+.+...|+... ..++.+.++
T Consensus 228 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~ 294 (390)
T 1d2f_A 228 LTSGSKSFNIPALTGAYGIIENSSSRDAYL----------S-ALKGRDGLSSPSVLALTAHIAAYQQGA--PWLDALRIY 294 (390)
T ss_dssp EECSHHHHTCGGGCCEEEEECSHHHHHHHH----------H-HHHTTSCCCSCCHHHHHHHHHHHHHCH--HHHHHHHHH
T ss_pred ccCccHhhcccChhheEEEECCHHHHHHHH----------H-HHhhhcccCCCCHHHHHHHHHHHhcCH--HHHHHHHHH
Confidence 677789999888 4888885 67765421 1 111 34566899999888877776422 236777888
Q ss_pred HHHHHHHHHHHHhc-cCCc---------ccc-cCCCCCcccHHHHHHHH-HccCccccCC--C--CCCccceeeccCCCH
Q psy8733 529 SLQKSVLLYQEIDN-SDKF---------YEC-PVQAGFPLDELFLKEAK-AHNMIQLKGH--R--LVGGIRASIYNAITV 592 (621)
Q Consensus 529 ~~~ka~~lY~~id~-~~~~---------~~~-~v~~~~~~~~~~~~~~~-~~~i~~~~g~--~--~~~~~r~~~~~a~~~ 592 (621)
.+++.+.+.+.+++ .+++ +.. .+.+...-...|.+.+. ++||....|. + ..+.||++.= .+.
T Consensus 295 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~ 372 (390)
T 1d2f_A 295 LKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG--CPR 372 (390)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCH
T ss_pred HHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEec--CCH
Confidence 88999999999987 3432 210 11100011345788887 6899875553 3 2567999854 367
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8733 593 DEAVILVKFMKEFRHK 608 (621)
Q Consensus 593 ~~~~~l~~~~~~~~~~ 608 (621)
|+++..++-|++..++
T Consensus 373 ~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 373 SKLEKGVAGLINAIRA 388 (390)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777777665543
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=92.19 E-value=0.21 Score=51.56 Aligned_cols=155 Identities=13% Similarity=0.123 Sum_probs=107.1
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCC---C-Cceee--e-eecccCCCccC-CCchhHHHHHHHHHHHHHh
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPI---T-PTVFH--F-KINADNNSVYN-TPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~---~-p~~~~--y-~~~~~~~s~~n-TP~~~~iy~~~~vl~~~~~ 518 (621)
..|+++.|.+|.+| |.|+++++++++++++.... + +..++ + ........+.. |||.+.++.+...|+++.+
T Consensus 211 ~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~ 290 (393)
T 1vjo_A 211 GVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQ 290 (393)
T ss_dssp TCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHH
T ss_pred CccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34778889999986 77999999999998764221 1 11110 0 00001223344 9999999999999999854
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCcccccCCC-------------CCcccHHHHHHHHHc-cCccccCCC--CCCcc
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA-------------GFPLDELFLKEAKAH-NMIQLKGHR--LVGGI 582 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~-------------~~~~~~~~~~~~~~~-~i~~~~g~~--~~~~~ 582 (621)
. |++.+.++.+++.+.+++.+++. ++ ...... .......|.+.+.++ ||....|.. ..+.+
T Consensus 291 ~-~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~i 367 (393)
T 1vjo_A 291 E-GLANCWQRHQKNVEYLWERLEDI-GL-SLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVW 367 (393)
T ss_dssp H-CHHHHHHHHHHHHHHHHHHHHHT-TC-CBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEE
T ss_pred c-cHHHHHHHHHHHHHHHHHHHHHc-CC-cccCCccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEE
Confidence 4 59999999999999999999875 32 111000 001235688888887 999766653 36779
Q ss_pred ceeecc-CCCHHHHHHHHHHHHHH
Q psy8733 583 RASIYN-AITVDEAVILVKFMKEF 605 (621)
Q Consensus 583 r~~~~~-a~~~~~~~~l~~~~~~~ 605 (621)
|++.++ ..+.|+++.+++.|+++
T Consensus 368 Ris~~~~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 368 RVGLMGFNSRKESVDQLIPALEQV 391 (393)
T ss_dssp EEECCGGGCSHHHHHHHHHHHHHH
T ss_pred EEeCCccCChHHHHHHHHHHHHHH
Confidence 999766 45677899999998876
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=91.58 E-value=0.26 Score=52.91 Aligned_cols=141 Identities=10% Similarity=0.023 Sum_probs=86.9
Q ss_pred HHHHHhhccccc-ccCCcEEeeec-HhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 449 FGVIIAGAQKNI-GPAGITVVIVR-EDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl~v~iv~-~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
.|++.++.+|.+ ||-|++++++| ++++++..+ ... +....| +.+.. ...+..+.+ .|++.+.
T Consensus 289 ~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~---~~~--------g~~~~~-~~~~~---~aal~~l~~-~~~~~~~ 352 (456)
T 2z67_A 289 VDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYP--------GRASAT-PVVNT---LVSLLSMGS-KNYLELV 352 (456)
T ss_dssp CSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSC--------SCBCSH-HHHHH---HHHHHHHHH-HHHHHHH
T ss_pred CCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCc---CCC--------CCCCCC-HHHHH---HHHHHHHHH-HHHHHHH
Confidence 566778899986 59999999995 777765422 111 111112 23333 333444433 3588888
Q ss_pred HHHHHHHHHHHHHHhccC---CcccccCCCC-------CcccHHHHHHHHHccCc--ccc-------CCC----CCCccc
Q psy8733 527 QNSLQKSVLLYQEIDNSD---KFYECPVQAG-------FPLDELFLKEAKAHNMI--QLK-------GHR----LVGGIR 583 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~---~~~~~~v~~~-------~~~~~~~~~~~~~~~i~--~~~-------g~~----~~~~~r 583 (621)
++..+.++.+++.|.+.+ ++-..+.+.- .....++.+.+.++|+. ..- |.. ..+.+|
T Consensus 353 ~~~~~~~~~l~~~L~~~~~~~g~~v~~~~~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr 432 (456)
T 2z67_A 353 KNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIV 432 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEE
T ss_pred HHHHHHHHHHHHHHHhcccccCCEecCCCCeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhh
Confidence 999999999999998763 3211111110 01124677888888862 111 110 145688
Q ss_pred eeeccCCCHHHHHHHHHHHHHH
Q psy8733 584 ASIYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 584 ~~~~~a~~~~~~~~l~~~~~~~ 605 (621)
++.-..+|.||++.+++-|+++
T Consensus 433 ~s~~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 433 MNAAIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp EECCTTCCHHHHHHHHHHHHTC
T ss_pred hhhhcCCCHHHHHHHHHHHHHH
Confidence 8877789999999999998764
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.31 Score=50.53 Aligned_cols=151 Identities=9% Similarity=0.032 Sum_probs=108.4
Q ss_pred HHHHHhhcccccccCCcE-EeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcC-------
Q psy8733 449 FGVIIAGAQKNIGPAGIT-VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQG------- 520 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~-v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~g------- 520 (621)
.|++..|.+|.+||- ++ +++++++++++..+.. ..|.......-...|||...+..+...++++.+.|
T Consensus 218 ~d~~~~s~~K~~g~~-~G~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~ 293 (406)
T 3cai_A 218 ADVVTVNAHAWGGPP-IGAMVFRDPSVMNSFGSVS---TNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSR 293 (406)
T ss_dssp CSEEEEEGGGGTSCS-CEEEEESCHHHHHTSCCCC---SCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSH
T ss_pred CCEEEeehhhhcCCC-cCeEEEEehHHHhhcCCcc---cCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccch
Confidence 467778889988974 99 9999999887643321 00100000112357899999999999999998877
Q ss_pred ------ChHHHHHHHHHHHHHHHHHHhccCCcccccCC--C-C--------CcccHHHHHHHHHccCccccCC-------
Q psy8733 521 ------GLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQ--A-G--------FPLDELFLKEAKAHNMIQLKGH------- 576 (621)
Q Consensus 521 ------g~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~--~-~--------~~~~~~~~~~~~~~~i~~~~g~------- 576 (621)
+++.+.++.++..+.+++.|++.+++ ..... . . .....+|.+.++++||....|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~ 372 (406)
T 3cai_A 294 RERLAVSMQSADAYLNRVFDYLMVSLRSLPLV-MLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDV 372 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTE-EECCCCSSBCSEEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCe-EEcCCccccCCEEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHHH
Confidence 48899999999999999999886553 11111 0 0 0123458888889999877665
Q ss_pred -C---CCCccceeeccCCCHHHHHHHHHHHHH
Q psy8733 577 -R---LVGGIRASIYNAITVDEAVILVKFMKE 604 (621)
Q Consensus 577 -~---~~~~~r~~~~~a~~~~~~~~l~~~~~~ 604 (621)
+ ..+.||++.-..++.|+++.+++.|++
T Consensus 373 ~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 373 LGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp HTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred cCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 2 246799999999999999999998875
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=90.69 E-value=0.36 Score=50.79 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=84.0
Q ss_pred HhhcccccccCC--cEEeee---cHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHH--Hh--cCChH
Q psy8733 453 IAGAQKNIGPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWI--KR--QGGLA 523 (621)
Q Consensus 453 ~a~~qk~~GpaG--l~v~iv---~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~--~~--~gg~~ 523 (621)
..|.-|.+|++| ++.+++ +++++++... .++. ...+++.+||.++.+++...|+.- ++ ...++
T Consensus 264 ~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 335 (420)
T 4f4e_A 264 SSSFSKSFSLYGERVGALSIITDSKDEAARVLS------QLKR--VIRTNYSNPPTHGGAIVAAVLASPELRASWVQELG 335 (420)
T ss_dssp EEECTTTTTCGGGCEEEEEEECSSHHHHHHHHH------HHHH--HHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHH------HHHH--HHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455669999888 555543 4555543110 0111 113466778888888777666531 11 12367
Q ss_pred HHHHHHHHHHHHHHHHHhcc---CCcccccCCCC----CcccH-HHHHHHHHccCccccCCCCCCccceeeccCCCHHHH
Q psy8733 524 KMEQNSLQKSVLLYQEIDNS---DKFYECPVQAG----FPLDE-LFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEA 595 (621)
Q Consensus 524 ~~~~~~~~ka~~lY~~id~~---~~~~~~~v~~~----~~~~~-~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~ 595 (621)
.+.++-+++.+.+++.+++. .++-..+.+.+ ..++. .+.+.++++||....| .|++ |-.++.+++
T Consensus 336 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gI~v~~~------~Ris-~~~~~~~~i 408 (420)
T 4f4e_A 336 EMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVST------GRIC-VAALNTRNL 408 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTT------SEEE-GGGCCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCCHHHHHHHHHhCCEEecCC------CeEE-EecCCHHHH
Confidence 88888999999999999875 22211000111 12333 3567778889987654 3886 456788999
Q ss_pred HHHHHHHHHH
Q psy8733 596 VILVKFMKEF 605 (621)
Q Consensus 596 ~~l~~~~~~~ 605 (621)
+.+++-|++.
T Consensus 409 ~~~~~~l~~~ 418 (420)
T 4f4e_A 409 DVVANAIAAV 418 (420)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=89.60 E-value=0.78 Score=48.94 Aligned_cols=108 Identities=10% Similarity=0.085 Sum_probs=70.9
Q ss_pred CccCCCchhHHHHHHHHHHHHH---h-cCChHHHHHHHHHHHHHHHHHHhcc--CC-----cccccC-CCC----CcccH
Q psy8733 496 SVYNTPPTFVVHVIQRVFAWIK---R-QGGLAKMEQNSLQKSVLLYQEIDNS--DK-----FYECPV-QAG----FPLDE 559 (621)
Q Consensus 496 s~~nTP~~~~iy~~~~vl~~~~---~-~gg~~~~~~~~~~ka~~lY~~id~~--~~-----~~~~~v-~~~----~~~~~ 559 (621)
+++.+||.++.+++...|+.-. + .-.++.+.++.+++.+.+++.+.+. ++ -+.... +.+ ..+..
T Consensus 320 ~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 399 (448)
T 3meb_A 320 KTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLTP 399 (448)
T ss_dssp TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCCH
T ss_pred cccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCCH
Confidence 5677888888888877764210 0 0136788888899999999999875 33 011111 111 12445
Q ss_pred HHHHHH-HHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 560 LFLKEA-KAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 560 ~~~~~~-~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
++...+ +++||....|- .|++. -.++.++++.+++-|++..++.
T Consensus 400 ~~~~~ll~~~gV~v~~G~-----gRis~-a~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 400 EHVDYLKEKWSIYLVKAG-----GRMSM-CGLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp HHHHHHHHHHCEEECSGG-----GEEEG-GGCCTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCEEEeCCC-----cEEEE-ecCCHHHHHHHHHHHHHHHHhc
Confidence 655544 77899877664 38864 5568888999999998887643
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=89.13 E-value=0.46 Score=49.39 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=110.7
Q ss_pred HHHHHhhccccc-ccCCc-EEeeecHhHhhhcCCCCCce------e----eeeec-ccCCCccCCCchhHHHHHHHHHHH
Q psy8733 449 FGVIIAGAQKNI-GPAGI-TVVIVREDLLEYALPITPTV------F----HFKIN-ADNNSVYNTPPTFVVHVIQRVFAW 515 (621)
Q Consensus 449 ~~~~~a~~qk~~-GpaGl-~v~iv~~~~l~~~~~~~p~~------~----~y~~~-~~~~s~~nTP~~~~iy~~~~vl~~ 515 (621)
.|++..|.+|.+ |+.|+ ++++++++++++..+..... + +|... ......+.|||...++.+...+++
T Consensus 218 ~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~ 297 (416)
T 1qz9_A 218 ADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDV 297 (416)
T ss_dssp CSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred CCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHH
Confidence 467788999997 46677 99999999876644321110 0 01100 011234678999999999999998
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhcc-C--Ccccc-cCC---CCC----c--ccHHHHHHHHHccCccccCCCCCCcc
Q psy8733 516 IKRQGGLAKMEQNSLQKSVLLYQEIDNS-D--KFYEC-PVQ---AGF----P--LDELFLKEAKAHNMIQLKGHRLVGGI 582 (621)
Q Consensus 516 ~~~~gg~~~~~~~~~~ka~~lY~~id~~-~--~~~~~-~v~---~~~----~--~~~~~~~~~~~~~i~~~~g~~~~~~~ 582 (621)
+.+. |++.+.++.+++.+.+++.|++. + ++-.. +.. ... + -...|.+.+.++||... ++..+.|
T Consensus 298 ~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~--~~~~~~l 374 (416)
T 1qz9_A 298 FAQT-DMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGD--YREPRIM 374 (416)
T ss_dssp HTTS-CHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECE--EETTTEE
T ss_pred HHhc-CHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCCHHHHHHHHHhCCcEec--cCCCCeE
Confidence 7643 69999999999999999999875 3 43111 110 010 1 14568888999998753 2346779
Q ss_pred ceeecc-CCCHHHHHHHHHHHHHHHHHcC
Q psy8733 583 RASIYN-AITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 583 r~~~~~-a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
|++.-+ .++.||++.+++.|+++.++..
T Consensus 375 Ris~~~~~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 375 RFGFTPLYTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp EEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence 999874 8999999999999999877644
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=87.71 E-value=0.49 Score=48.88 Aligned_cols=145 Identities=12% Similarity=0.106 Sum_probs=102.8
Q ss_pred HHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 449 FGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
.|++..|..|.+| |.| ++++.+++++++..+ ......++||+...+..+...++++.+ .+++.+.+
T Consensus 217 ~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~aa~~~al~~~~~-~~~~~~~~ 283 (405)
T 2vi8_A 217 AHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDK-----------AIFPGIQGGPLMHVIAAKAVAFGEALQ-DDFKAYAK 283 (405)
T ss_dssp CSEEEEESSSTTCCCSC-EEEEECHHHHHHHHH-----------HHTTTTCSSCCHHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred CCEEEEeccccCCCCCC-eEEEEcHHHHHHHHh-----------hhcccccCCCCHHHHHHHHHHHHHHHh-hhHHHHHH
Confidence 4667788899997 999 999999988765321 111234678888888888888887764 36888999
Q ss_pred HHHHHHHHHHHHHhccCCcccc-cCCCC--------C-c-ccHHHHHHHHHccCccccCC------C--CCCccceeecc
Q psy8733 528 NSLQKSVLLYQEIDNSDKFYEC-PVQAG--------F-P-LDELFLKEAKAHNMIQLKGH------R--LVGGIRASIYN 588 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~~~~-~v~~~--------~-~-~~~~~~~~~~~~~i~~~~g~------~--~~~~~r~~~~~ 588 (621)
+.+++.+.+++.+++. ++-.. +-... . . ....+.+.++++||....|+ . ..+.+|++.=.
T Consensus 284 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~ 362 (405)
T 2vi8_A 284 RVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAA 362 (405)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHH
T ss_pred HHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeee
Confidence 9999999999999865 32110 10010 0 1 23457888899999877664 1 24569998432
Q ss_pred ----CCCHHHHHHHHHHHHHHHH
Q psy8733 589 ----AITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 589 ----a~~~~~~~~l~~~~~~~~~ 607 (621)
.++.||++.+++.|+++.+
T Consensus 363 ~~~~~~~~~~i~~~~~~l~~~~~ 385 (405)
T 2vi8_A 363 VTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHT
T ss_pred eeecCCCHHHHHHHHHHHHHHHh
Confidence 6899999999999998764
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=87.28 E-value=3.5 Score=43.32 Aligned_cols=137 Identities=9% Similarity=0.001 Sum_probs=84.2
Q ss_pred hccccccc-CCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy8733 455 GAQKNIGP-AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKS 533 (621)
Q Consensus 455 ~~qk~~Gp-aGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka 533 (621)
+..|.+|+ -.++.++.++++++...+..+ ....++|+ +|.++...+-.+|+.+.+ . .+.++.+++.
T Consensus 268 s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~--------~~~~~t~~-~~~~~~aa~~a~l~~~~~-~---~~~~~~~~~~ 334 (434)
T 2epj_A 268 VLGKIIGGGFPVGAVAGSREVMSLLTPQGK--------VFNAGTFN-AHPITMAAGLATLKALEE-E---PVYSVSREAA 334 (434)
T ss_dssp EEEGGGGTTSSCEEEEECHHHHTTBTTTSS--------BCCCCTTT-TCHHHHHHHHHHHHHHHH-S---CHHHHHHHHH
T ss_pred eecchhcCCcceeeeeecHHHHHhhccCCC--------cccCCCCC-cCHHHHHHHHHHHHHHHh-c---CHHHHHHHHH
Confidence 45688875 136788899998865432100 11234443 566778888888998876 3 2445566666
Q ss_pred HHHHHHHhcc----C---------CcccccCCCC-----------C-cccHHHHHHHHHccCccccCCCCCCccceeecc
Q psy8733 534 VLLYQEIDNS----D---------KFYECPVQAG-----------F-PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYN 588 (621)
Q Consensus 534 ~~lY~~id~~----~---------~~~~~~v~~~-----------~-~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~ 588 (621)
+.+.+.+++- + .|+...+.+. + .....|.+.+.++||....|.. +.+|++ -
T Consensus 335 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~~--~ 410 (434)
T 2epj_A 335 KALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL--EAVFTG--L 410 (434)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT--SCEECC--T
T ss_pred HHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC--CcEEEe--c
Confidence 6666666542 1 1111111110 0 1234588889999998765532 346665 4
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy8733 589 AITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 589 a~~~~~~~~l~~~~~~~~~~ 608 (621)
.++.||++.+++.|+++.++
T Consensus 411 ~~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 411 PHQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp TCSHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999887654
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=86.16 E-value=0.93 Score=48.26 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=86.4
Q ss_pred HHHHhhcccccccCC--cEEeee-cHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHh--------
Q psy8733 450 GVIIAGAQKNIGPAG--ITVVIV-REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR-------- 518 (621)
Q Consensus 450 ~~~~a~~qk~~GpaG--l~v~iv-~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~-------- 518 (621)
+++..|.=|.+|++| ++.++. +++++++..+ ++ .. +..++|.++-+++-..|+...+
T Consensus 243 ~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~-------~~----~~-~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~ 310 (427)
T 2hox_A 243 DILLFTMSKFTGHSGSRFGWALIKDESVYNNLLN-------YM----TK-NTEGTPRETQLRSLKVLKEVVAMVKTQKGT 310 (427)
T ss_dssp SEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHH-------HH----HH-HTSSCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEeChhcCCCCCceEEEEEECCHHHHHHHHH-------HH----Hh-cCCCCCHHHHHHHHHHhhcchhhhccccch
Confidence 445566778999888 788898 4888766321 11 11 2234556665555555543211
Q ss_pred -cCChHHHHHHHHHHHHHHHHHHhccCCccc---c-cC--------CC--CC----cc---cHHHHHH-HHHccCccccC
Q psy8733 519 -QGGLAKMEQNSLQKSVLLYQEIDNSDKFYE---C-PV--------QA--GF----PL---DELFLKE-AKAHNMIQLKG 575 (621)
Q Consensus 519 -~gg~~~~~~~~~~ka~~lY~~id~~~~~~~---~-~v--------~~--~~----~~---~~~~~~~-~~~~~i~~~~g 575 (621)
..=++.+.++.+++.+.+.+.|++.+++-. . |- .+ +. ++ ..++.+. ++++||....|
T Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg 390 (427)
T 2hox_A 311 MRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNG 390 (427)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCC
Confidence 111345567778889999999988644311 0 00 00 00 11 2335555 46889986544
Q ss_pred --CCC-CCccceeeccCCCHHHHHHHHHHHHHHHH
Q psy8733 576 --HRL-VGGIRASIYNAITVDEAVILVKFMKEFRH 607 (621)
Q Consensus 576 --~~~-~~~~r~~~~~a~~~~~~~~l~~~~~~~~~ 607 (621)
|+. .+.||++.-. +.|+++..++-|+++.+
T Consensus 391 ~~f~~~~~~~Ris~~~--~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 391 VGFEASSRYVRLSLIK--TQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp GGGTSCTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred CccCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 444 5669999874 88888888888887764
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=83.18 E-value=1.6 Score=44.27 Aligned_cols=136 Identities=11% Similarity=0.039 Sum_probs=75.7
Q ss_pred HHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHH
Q psy8733 450 GVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 528 (621)
Q Consensus 450 ~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~ 528 (621)
|++..+..|.+ ||.| ++++.+++++++..+ ++. ..+...++++.+....+ ..|+.. ++.+++
T Consensus 198 d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~-~~l~~~-----~~~~~~- 260 (357)
T 3lws_A 198 DSIYISFYKGLGGIAG-AILAGPAAFCQTARI-------WKR--RYGGDLISLYPYIVSAD-YYYELR-----KDRMGQ- 260 (357)
T ss_dssp SEEEEESSSTTCCSSC-EEEEECHHHHHHHHH-------HHH--HTTCCCSCCHHHHHHHH-HHHHHH-----TTCHHH-
T ss_pred CEEEEeccccCCCCce-EEEEcCHHHHHHHHH-------HHH--HhcCCcccchHHHHHHH-HHHHHH-----HHHHHH-
Confidence 44456778999 6999 888999998876421 111 11122333343332222 122211 222333
Q ss_pred HHHHHHHHHHHHhccCCcccc-cCCC-C--------Cc---ccHHHHHHHHHccCccccCCCC-CC--ccceeeccC---
Q psy8733 529 SLQKSVLLYQEIDNSDKFYEC-PVQA-G--------FP---LDELFLKEAKAHNMIQLKGHRL-VG--GIRASIYNA--- 589 (621)
Q Consensus 529 ~~~ka~~lY~~id~~~~~~~~-~v~~-~--------~~---~~~~~~~~~~~~~i~~~~g~~~-~~--~~r~~~~~a--- 589 (621)
..++++.+++.+.+.+++ .. +..+ + .. ....+.+.++++||....|... .| .+|+++=..
T Consensus 261 ~~~~~~~l~~~L~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~ 339 (357)
T 3lws_A 261 YYEQAKQLAEQFNALPGV-HTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGE 339 (357)
T ss_dssp HHHHHHHHHHHHHTSTTE-EEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGG
T ss_pred HHHHHHHHHHHHHhCCCC-eeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhh
Confidence 356678899999887653 22 1111 1 01 1345788999999998777532 23 588876544
Q ss_pred CCHHHHHHHHHHHH
Q psy8733 590 ITVDEAVILVKFMK 603 (621)
Q Consensus 590 ~~~~~~~~l~~~~~ 603 (621)
.+.|++++.++-|+
T Consensus 340 ~~~~~l~~al~~l~ 353 (357)
T 3lws_A 340 LDQQTRDAGFARLR 353 (357)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 46666555555444
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=82.23 E-value=1.7 Score=45.12 Aligned_cols=100 Identities=16% Similarity=0.245 Sum_probs=64.7
Q ss_pred CccCCCchhHHHHHHHHHH-------HHHhcCChHHHHHHHHHHHHHHHHHHhccC--CcccccC-CCC----CcccHHH
Q psy8733 496 SVYNTPPTFVVHVIQRVFA-------WIKRQGGLAKMEQNSLQKSVLLYQEIDNSD--KFYECPV-QAG----FPLDELF 561 (621)
Q Consensus 496 s~~nTP~~~~iy~~~~vl~-------~~~~~gg~~~~~~~~~~ka~~lY~~id~~~--~~~~~~v-~~~----~~~~~~~ 561 (621)
+++.+||.++.+++...|+ |.. .++.+.++-+++.+.+++.+.+.. +-+.... +.+ ..+..++
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 369 (409)
T 4eu1_A 293 PMYNNPPLYGAWVVSSILKDPQLTALWKK---ELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLTREQ 369 (409)
T ss_dssp HHHSSCCHHHHHHHHHHHHCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCCHHH
T ss_pred hhcCCCChHHHHHHHHHhCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEEEEeCCCHHH
Confidence 4456778888888887776 443 367788888899999999987652 0011100 111 1233454
Q ss_pred H-HHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHH
Q psy8733 562 L-KEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 562 ~-~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~ 605 (621)
. +.++++||....| .|++. -.++.++++.+++-|++.
T Consensus 370 ~~~ll~~~gv~v~p~------~Ri~~-~~~~~~~i~~~~~~l~~~ 407 (409)
T 4eu1_A 370 VELLRSEYHIYMTLN------GRAAV-SGLNSTNVEYVSQAIHNV 407 (409)
T ss_dssp HHHHHHHHCEECCTT------CEEEG-GGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEcCC------CEEEE-EecCHhhHHHHHHHHHHH
Confidence 4 4445779987664 46643 567888899999988765
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=82.45 E-value=0.29 Score=50.84 Aligned_cols=140 Identities=9% Similarity=0.000 Sum_probs=83.3
Q ss_pred HHHhhcccccccCC--cEEeeecHh-HhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 451 VIIAGAQKNIGPAG--ITVVIVRED-LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 451 ~~~a~~qk~~GpaG--l~v~iv~~~-~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
++..|.-|.+|.+| ++.++.+++ +++... . .....++.+||.++.+.+-..|+.. ...++.+.+
T Consensus 231 i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~ 297 (392)
T 3b1d_A 231 LVLSSATKTFNIAGTKNSYAIIENPTLCAQFK----------H-QQLVNNHHEVSSLGYIATETAYRYG--KPWLVALKA 297 (392)
Confidence 45567788998666 466777643 655421 1 1222234567777777666666532 235677788
Q ss_pred HHHHHHHHHHHHHhc-cCCc---------cc-ccCCCCCcccHHHHHHHH-HccCccccCC--C--CCCccceeeccCCC
Q psy8733 528 NSLQKSVLLYQEIDN-SDKF---------YE-CPVQAGFPLDELFLKEAK-AHNMIQLKGH--R--LVGGIRASIYNAIT 591 (621)
Q Consensus 528 ~~~~ka~~lY~~id~-~~~~---------~~-~~v~~~~~~~~~~~~~~~-~~~i~~~~g~--~--~~~~~r~~~~~a~~ 591 (621)
+.+++.+.+.+.+++ .+++ +. ..+.+.......|.+.+. ++||....|. + ..+.||++ | +.+
T Consensus 298 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~-~-~~~ 375 (392)
T 3b1d_A 298 VLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN-I-AAP 375 (392)
Confidence 888888888888876 3332 21 111100012234677774 7899876553 3 24569999 3 346
Q ss_pred HHHHHHHHHHHHHH
Q psy8733 592 VDEAVILVKFMKEF 605 (621)
Q Consensus 592 ~~~~~~l~~~~~~~ 605 (621)
.|+++..++-|++.
T Consensus 376 ~e~i~~~l~~l~~~ 389 (392)
T 3b1d_A 376 KSLVEEICKRIVCC 389 (392)
Confidence 78888777776654
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=81.33 E-value=2 Score=44.87 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=96.7
Q ss_pred HHHHHhhcccccccCCcEEeeecHhH-hhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHH
Q psy8733 449 FGVIIAGAQKNIGPAGITVVIVREDL-LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQ 527 (621)
Q Consensus 449 ~~~~~a~~qk~~GpaGl~v~iv~~~~-l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~ 527 (621)
.|++..|.+|.+||- ++++++++++ +.+ ..|..+.... . ......|+|.+.++.+...++++.+ +++.+.+
T Consensus 238 ~d~~~~s~~K~~g~~-~G~~~~~~~~~~~~---~~~~~~~~~~-~-~~~~~~~~~~~~~~a~~aal~~~~~--~~~~~~~ 309 (432)
T 3a9z_A 238 VDFLTIVGHKFYGPR-IGALYVRGVGKLTP---LYPMLFGGGQ-E-RNFRPGTENTPMIAGLGKAADLVSE--NCETYEA 309 (432)
T ss_dssp CSEEEEEGGGTTCCS-CEEEEETTBTTTBC---CCCSCCSSCG-G-GGTSCSCCCHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCEEEEehhHhcCCc-ceEEEEccccccCC---cCceeecCCc-c-ccccCCCcCHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 466778889999986 9999999876 222 2222221110 1 1223468999999999999998875 6899999
Q ss_pred HHHHHHHHHHHHHhccCCc-cc--cc-----CCC--------CCcc-cHHHHHHHHHccCccccC------C--------
Q psy8733 528 NSLQKSVLLYQEIDNSDKF-YE--CP-----VQA--------GFPL-DELFLKEAKAHNMIQLKG------H-------- 576 (621)
Q Consensus 528 ~~~~ka~~lY~~id~~~~~-~~--~~-----v~~--------~~~~-~~~~~~~~~~~~i~~~~g------~-------- 576 (621)
+.+++++.+++.|++.+++ +. .+ ... .... ...+.+.+ +++..-.| |
T Consensus 310 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l 387 (432)
T 3a9z_A 310 HMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC--QTLLASVGASCHSDHEDRPSPVL 387 (432)
T ss_dssp HHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC--SSEECBSSCGGGGGGTTSCCHHH
T ss_pred HHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh--cCeEEeccccccCCCCCCccHHH
Confidence 9999999999999774322 00 11 000 0011 22344433 23332111 1
Q ss_pred ---CC-----CCccceeeccCCCHHHHHHHHHHHHHHHHH
Q psy8733 577 ---RL-----VGGIRASIYNAITVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 577 ---~~-----~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~ 608 (621)
+. .+.||++.-..++.||++.+++.|+++.++
T Consensus 388 ~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 388 LSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp HHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 21 367999998888999999999999988654
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=80.92 E-value=1.6 Score=45.13 Aligned_cols=134 Identities=16% Similarity=0.232 Sum_probs=75.3
Q ss_pred hhcccccccCC--cEEeee---cHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHH-------HHHhcCC
Q psy8733 454 AGAQKNIGPAG--ITVVIV---REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA-------WIKRQGG 521 (621)
Q Consensus 454 a~~qk~~GpaG--l~v~iv---~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~-------~~~~~gg 521 (621)
.|.=|.+|++| ++.+++ ++...+.... . .+. . ..+++..|+.++-.++...++ |.. -
T Consensus 246 ~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~---~---~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~ 314 (401)
T 7aat_A 246 QSYAKNMGLYGERAGAFTVICRDAEEAKRVES---Q---LKI-L-IRPMYSNPPMNGARIASLILNTPELRKEWLV---E 314 (401)
T ss_dssp EECTTTSCCGGGCEEEEEEECSSHHHHHHHHH---H---HHH-H-HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHH---H
T ss_pred ecCCcccccccCceEEEEEEeCCHHHHHHHHH---H---HHH-H-HHhccCCCChHHHHHHHHHhCCHHHHHHHHH---H
Confidence 55668899888 566665 4443211000 0 011 1 123344566666666655442 222 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC--CcccccC-CCC----CcccHHHHH-HHHHccCccccCCCCCCccceeeccCCCHH
Q psy8733 522 LAKMEQNSLQKSVLLYQEIDNSD--KFYECPV-QAG----FPLDELFLK-EAKAHNMIQLKGHRLVGGIRASIYNAITVD 593 (621)
Q Consensus 522 ~~~~~~~~~~ka~~lY~~id~~~--~~~~~~v-~~~----~~~~~~~~~-~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~ 593 (621)
++.+.++.+++.+.+++.|.+.. +-+.... +.+ ..+..+++. .++++||.... ++|++. -.++.+
T Consensus 315 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~------~~Ris~-~~~~~~ 387 (401)
T 7aat_A 315 VKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTK------DGRISV-AGVASS 387 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCT------TCEEEG-GGCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCCHHHHHHHHHhCCEeccC------CCeEEe-ccCChh
Confidence 56777888888899999887642 0011100 000 123345444 44778988753 478875 457777
Q ss_pred HHHHHHHHHHHH
Q psy8733 594 EAVILVKFMKEF 605 (621)
Q Consensus 594 ~~~~l~~~~~~~ 605 (621)
+++.+++-|++.
T Consensus 388 ~i~~~~~~l~~~ 399 (401)
T 7aat_A 388 NVGYLAHAIHQV 399 (401)
T ss_dssp THHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 899999988764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=80.81 E-value=12 Score=39.12 Aligned_cols=135 Identities=9% Similarity=0.026 Sum_probs=84.3
Q ss_pred hccccccc-CCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy8733 455 GAQKNIGP-AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKS 533 (621)
Q Consensus 455 ~~qk~~Gp-aGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~~~~~~ka 533 (621)
+-.|.+|+ -.++.++.++++++...+..+ ....++|+ +|.++...+-.+|+.+.+ .+.+.++.+++.
T Consensus 263 s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~--------~~~~~t~~-~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~ 330 (424)
T 2e7u_A 263 TLGKILGGGLPAAAYAGRREIMEKVAPLGP--------VYQAGTLS-GNPLAMAAGLATLELLEE---NPGYYAYLEDLG 330 (424)
T ss_dssp EECGGGGTTSSCEEEEECHHHHTTBTTTSS--------BCCCCTTC-SCHHHHHHHHHHHHHHHH---CTHHHHHHHHHH
T ss_pred hhhhhhhCCcceEEEEEcHHHHhhhcccCC--------cccCCCCC-CCHHHHHHHHHHHHHHHh---ccHHHHHHHHHH
Confidence 44688874 146788999998876432100 11234444 556677778888888875 255667777777
Q ss_pred HHHHHHHhcc----C---------CcccccCCCC-----------C-cccHHHHHHHHHccCccccCCCCCCccceeecc
Q psy8733 534 VLLYQEIDNS----D---------KFYECPVQAG-----------F-PLDELFLKEAKAHNMIQLKGHRLVGGIRASIYN 588 (621)
Q Consensus 534 ~~lY~~id~~----~---------~~~~~~v~~~-----------~-~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~ 588 (621)
+.+.+.+++- + .|+...+.+. + .....|.+.+.++|+....|.. +.+|++ -
T Consensus 331 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~~--~ 406 (424)
T 2e7u_A 331 ARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF--EAAFLS--V 406 (424)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS--SCEECC--T
T ss_pred HHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC--CceEee--c
Confidence 8887777652 2 1111111110 0 1234588888899998766532 347766 4
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy8733 589 AITVDEAVILVKFMKEF 605 (621)
Q Consensus 589 a~~~~~~~~l~~~~~~~ 605 (621)
+++.|+++++++.|++.
T Consensus 407 ~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 407 AHREEDVEKTLEALRKA 423 (424)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 79999999999988763
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=80.62 E-value=1.1 Score=46.67 Aligned_cols=139 Identities=9% Similarity=0.063 Sum_probs=80.8
Q ss_pred HHHHHhhcccccc-cCC--cEEeeecHhHhh-hcCCCCCceeeeeecccCCCc-cCCCchhHHHHHHHHHHHHHhcCChH
Q psy8733 449 FGVIIAGAQKNIG-PAG--ITVVIVREDLLE-YALPITPTVFHFKINADNNSV-YNTPPTFVVHVIQRVFAWIKRQGGLA 523 (621)
Q Consensus 449 ~~~~~a~~qk~~G-paG--l~v~iv~~~~l~-~~~~~~p~~~~y~~~~~~~s~-~nTP~~~~iy~~~~vl~~~~~~gg~~ 523 (621)
.|++..|..|.+| |.+ .++++.++++++ ...+ +.. .+ ..|+|.+..+++...|+.+.
T Consensus 201 ~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~l~~~~------ 262 (398)
T 2rfv_A 201 ADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV-------GLK-----DITGGCMSPFNAWLTLRGVKTLG------ 262 (398)
T ss_dssp CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-------HHH-----HTTCCCCCHHHHHHHHHHHTTHH------
T ss_pred CcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH-------HHH-----hCCCCCCCHHHHHHHHhhhhhHH------
Confidence 4677789999997 555 489999999886 3211 111 11 24677788888777775332
Q ss_pred HHHHHHHHHHHHHHHHHhccC---------------------------CcccccCCCCCcccHHHHHHHHHccCccccCC
Q psy8733 524 KMEQNSLQKSVLLYQEIDNSD---------------------------KFYECPVQAGFPLDELFLKEAKAHNMIQLKGH 576 (621)
Q Consensus 524 ~~~~~~~~ka~~lY~~id~~~---------------------------~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~ 576 (621)
...++..+.++.+-+++.+.+ +++...+....+....|++.++.+|+..-.|.
T Consensus 263 ~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G~ 342 (398)
T 2rfv_A 263 IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGD 342 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCCCC
Confidence 222233445666667776532 11211111000012224444444455533331
Q ss_pred ------------------------C-CCCccceeeccCCCHHHHHHHHHHHHHH
Q psy8733 577 ------------------------R-LVGGIRASIYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 577 ------------------------~-~~~~~r~~~~~a~~~~~~~~l~~~~~~~ 605 (621)
+ ..+.||++.=...+.|+++.|++.|++.
T Consensus 343 ~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 343 TETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 1 1467999999999999999999988753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 621 | ||||
| d2c0ra1 | 361 | c.67.1.4 (A:2-362) Phosphoserine aminotransferase, | 8e-36 | |
| d2c0ra1 | 361 | c.67.1.4 (A:2-362) Phosphoserine aminotransferase, | 4e-19 | |
| d1w23a_ | 360 | c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT | 7e-35 | |
| d1w23a_ | 360 | c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT | 1e-22 | |
| d1bjna_ | 360 | c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT | 2e-28 | |
| d1bjna_ | 360 | c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT | 3e-20 | |
| d1h0ca_ | 388 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 5e-13 | |
| d1m32a_ | 361 | c.67.1.3 (A:) 2-aminoethylphosphonate transaminase | 8e-13 | |
| d1vjoa_ | 377 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 1e-12 | |
| d2ch1a1 | 388 | c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas | 4e-12 | |
| d2bkwa1 | 382 | c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe | 8e-12 | |
| d1iuga_ | 348 | c.67.1.3 (A:) Subgroup IV putative aspartate amino | 2e-11 |
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Score = 135 bits (341), Expect = 8e-36
Identities = 131/381 (34%), Positives = 188/381 (49%), Gaps = 84/381 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
NF AGPA LP EVLE + +DY+ TG+S+MEMSHR A Y ++N+ QA L LL
Sbjct: 4 AYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGN 63
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P YK+LF+QGG + FA + MN +
Sbjct: 64 PTGYKVLFIQGG-------------------------------ASTQFAMIPMNFLKEGQ 92
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
A+YV+TGSW+ KA EA+ G
Sbjct: 93 TANYVMTGSWASKALKEAKLIGDT------------------------------------ 116
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
+ S Y+++P A+YL+ NET++G +F
Sbjct: 117 -----------------HVAASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFK 159
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
PD+ +PL+ DMSS+ LSR FD+++FG++ AGAQKN+GP+G+TVVIVREDL+ +
Sbjct: 160 AFPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKH 219
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
PT+ + NNS+YNTPP+F ++++ V WI+ +GGL ++Q + +K+ L+Y ID
Sbjct: 220 LPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAID 279
Query: 412 NSDKFYECPVQAGCRSRMNVT 432
S FY V RS MN+T
Sbjct: 280 QSGGFYRGCVDVDSRSDMNIT 300
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Score = 87.4 bits (215), Expect = 4e-19
Identities = 70/175 (40%), Positives = 105/175 (60%), Gaps = 13/175 (7%)
Query: 448 FFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVH 507
FG++ AGAQKN+GP+G+TVVIVREDL+ + PT+ + NNS+YNTPP+F ++
Sbjct: 186 QFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIY 245
Query: 508 VIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFP----------- 556
++ V WI+ +GGL ++Q + +K+ L+Y ID S FY V
Sbjct: 246 MVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS 305
Query: 557 --LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
L++ F+K ++ + LKGHR VGG+RASIYNA+ + LV+FM+ F+
Sbjct: 306 EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSR 360
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Score = 133 bits (334), Expect = 7e-35
Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 84/381 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
V NF AGP+ LP+ LE ++ LL++ T +SVME+SHRS Y +++ Q LRELL +
Sbjct: 4 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQI 63
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
PN+Y+ILF LQGG + F + MNL+ +
Sbjct: 64 PNDYQILF-------------------------------LQGGASLQFTMLPMNLLTKGT 92
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
+YV+TGSW + + + L +
Sbjct: 93 IGNYVLTGSW--------------------------------SEKALKEAKLLGETHIAA 120
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
+ Y SIPD S + + +YL+ N T+ G ++
Sbjct: 121 STKANS---------------------YQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ 159
Query: 292 YIPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPI 351
P+ PL++DMSS+ LSR V++FG+I AGAQKN+GP+G+TVVIV++DLL +
Sbjct: 160 NFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQ 219
Query: 352 TPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411
PT+ + + ++S+YNTPPTF +++++ V WIK GG + + + +K+ ++Y ID
Sbjct: 220 VPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTID 279
Query: 412 NSDKFYECPVQAGCRSRMNVT 432
S+ FY + G RS MNVT
Sbjct: 280 ESNGFYVGHAEKGSRSLMNVT 300
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Score = 97.8 bits (242), Expect = 1e-22
Identities = 67/188 (35%), Positives = 105/188 (55%), Gaps = 14/188 (7%)
Query: 431 VTDIFFTFSHVQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKI 490
+ D+ F +I AGAQKN+GP+G+TVVIV++DLL + PT+ +
Sbjct: 170 IADMSSDILSRPLKVNQFG-MIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYAT 228
Query: 491 NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP 550
+ ++S+YNTPPTF +++++ V WIK GG + + + +K+ ++Y ID S+ FY
Sbjct: 229 HIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGH 288
Query: 551 VQAGFP-------------LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVI 597
+ G L++ FL +AK + L GHR VGG RASIYNA+ +D +
Sbjct: 289 AEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIA 348
Query: 598 LVKFMKEF 605
L + M +F
Sbjct: 349 LRELMIQF 356
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Score = 114 bits (286), Expect = 2e-28
Identities = 129/382 (33%), Positives = 180/382 (47%), Gaps = 85/382 (22%)
Query: 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV 111
+ NF +GPA LP EVL++ ++ L D+ G SVME+SHR ++ ++ + + R+LLNV
Sbjct: 2 IFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNV 61
Query: 112 PNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTG 171
P+NYK+ LF GGG G FAAV +N++G
Sbjct: 62 PSNYKV-------------------------------LFCHGGGRGQFAAVPLNILGDKT 90
Query: 172 KADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETV 231
ADYV G W+ A EA+KY N+ DN
Sbjct: 91 TADYVDAGYWAASAIKEAKKYCTPNVFDA-------KVTVDGLRAVKPMREWQLSDNAA- 142
Query: 232 DGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFN 291
Y++YC NET+DG+ +
Sbjct: 143 --------------------------------------------YMHYCPNETIDGIAID 158
Query: 292 YIPDSQGIPLVS-DMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALP 350
PD +V+ D SS LSR DVS++GVI AGAQKNIGPAG+T+VIVREDLL A
Sbjct: 159 ETPDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANI 218
Query: 351 ITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410
P++ + I DN S++NTPPTF ++ VF W+K GG+A+M++ + Q+ L +
Sbjct: 219 ACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKIN-QQKAELLYGV 277
Query: 411 DNSDKFYECPVQAGCRSRMNVT 432
++ FY V RSRMNV
Sbjct: 278 IDNSDFYRNDVAKRNRSRMNVP 299
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Score = 90.6 bits (223), Expect = 3e-20
Identities = 81/175 (46%), Positives = 110/175 (62%), Gaps = 12/175 (6%)
Query: 447 FFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVV 506
+GVI AGAQKNIGPAG+T+VIVREDLL A P++ + I DN S++NTPPTF
Sbjct: 185 SRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAW 244
Query: 507 HVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAG---------FP- 556
++ VF W+K GG+A+M++ + QK+ LLY IDNSD + +
Sbjct: 245 YLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLAD 304
Query: 557 --LDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609
LD+LFL+E+ A + LKGHR+VGG+RASIYNA+ ++ L FM EF +H
Sbjct: 305 SALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRH 359
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.6 bits (166), Expect = 5e-13
Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP 112
+ G GP+ LP ++ + + S D +I ++ + ++ +
Sbjct: 21 LLLGPGPSNLPPRIMAA------------GGLQMIGSMSKDMYQIMDEIKEGIQYVFQTR 68
Query: 113 NNYKILFLQGGGTGMFAAVAMN 134
N ++ G + AA+
Sbjct: 69 NPLTLVISGSGHCALEAALVNV 90
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Score = 67.9 bits (164), Expect = 8e-13
Identities = 14/87 (16%), Positives = 22/87 (25%), Gaps = 12/87 (13%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP R V E + + + + L L
Sbjct: 4 LTPGPLTTSRTVKEA------------MLFDSCTWDDDYNIGVVEQIRQQLTALATASEG 51
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMN 141
Y + LQG G+ AV + +
Sbjct: 52 YTSVLLQGSGSYAVEAVLGSALGPQDK 78
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Score = 67.4 bits (163), Expect = 1e-12
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVP 112
+ G GP+ VL+ ++V + H + + ++ Q+ LR +
Sbjct: 20 LLLGPGPSNAHPSVLQA------------MNVSPVGHLDPAFLALMDEIQSLLRYVWQTE 67
Query: 113 NNYKILFLQGGGTGMFAAVAMNLISSSM 140
N I G GT A N +
Sbjct: 68 NPLTIAV-SGTGTAAMEATIANAVEPGD 94
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Score = 65.9 bits (159), Expect = 4e-12
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
G GP+ + VL ++ +S+ A+ + ++ + LR + N
Sbjct: 21 MGPGPSNCSKRVLTA------------MTNTVLSNFHAELFRTMDEVKDGLRYIFQTE-N 67
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILF 150
+ + G A+ NL+ V ++
Sbjct: 68 RATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIW 103
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.1 bits (157), Expect = 8e-12
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 14/86 (16%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLN--VP 112
GP L V + + V + H S ++ I R +
Sbjct: 7 LIPGPIILSGAVQKA------------LDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAA 54
Query: 113 NNYKILFLQGGGTGMFAAVAMNLISS 138
+ + L G GT + A N I S
Sbjct: 55 SKSQPFVLAGSGTLGWDIFASNFILS 80
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 63.9 bits (154), Expect = 2e-11
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 55 FGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNN 114
GP +L + LE ++ ++ HR+ ++ + LRE
Sbjct: 4 LTPGPVRLHPKALEA------------LARPQLHHRTEAAREVFLKARGLLREAFRT--E 49
Query: 115 YKILFLQGGGTGMFAAVAMNLISSSM 140
++L L G GT A+ NL +
Sbjct: 50 GEVLILTGSGTLAMEALVKNLFAPGE 75
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 621 | |||
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 100.0 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 100.0 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 100.0 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 100.0 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.95 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.94 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.93 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.73 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.53 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.33 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.26 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.14 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.05 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.01 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 98.98 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 98.97 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 98.96 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 98.96 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 98.9 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 98.89 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 98.86 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 98.86 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 98.84 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 98.84 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 98.83 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 98.81 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 98.79 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.79 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 98.78 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 98.75 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 98.72 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 98.71 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 98.7 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 98.56 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 98.55 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 98.54 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 98.52 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 98.46 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 98.45 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 98.43 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.43 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.41 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 98.35 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.33 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 98.33 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 98.32 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 98.28 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.24 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.23 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 98.22 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 98.03 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 97.98 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 97.97 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 97.95 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 97.93 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 97.91 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 97.83 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 97.78 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 97.72 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 97.67 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 97.59 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 97.54 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 97.47 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 97.4 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 97.38 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 97.31 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 97.26 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 97.22 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 97.19 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 97.13 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 97.05 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 97.05 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 97.04 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 97.03 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 96.98 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 96.88 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 96.75 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 96.71 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 96.66 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 96.65 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 96.43 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 96.31 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 96.13 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 96.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 95.69 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 95.1 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 95.08 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 94.61 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 94.33 |
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=100.00 E-value=8.6e-50 Score=418.41 Aligned_cols=355 Identities=41% Similarity=0.710 Sum_probs=280.3
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
.|.|||+|||+++|++|+++|++++.+|.+.|+|+++++|||++|.++++++|++|++||++|++|+|+|++||||.
T Consensus 2 ~~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~--- 78 (361)
T d2c0ra1 2 ERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGAST--- 78 (361)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHH---
T ss_pred CCCcccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchH---
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
.++++..|+.+++++++++.+|.|+++|.+.++++|.....
T Consensus 79 ----------------------------~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~----------- 119 (361)
T d2c0ra1 79 ----------------------------QFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVA----------- 119 (361)
T ss_dssp ----------------------------HHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEE-----------
T ss_pred ----------------------------HHHHHHhccccCCCceEEEeechhhhhhhhhhhhcCceeee-----------
Confidence 56667888888899999999999999999999999975433
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
+..+|+..++++. .++. +..+ + ++|++|+||..
T Consensus 120 ---------------------~~~~~~~~~~~~~---------------------~~~~-~~~~-~---~~~v~~~tg~~ 152 (361)
T d2c0ra1 120 ---------------------ASSEASNYMTLPK---------------------LQEI-QLQD-N---AAYLHLTSNET 152 (361)
T ss_dssp ---------------------EECGGGTTCSCCC---------------------GGGC-CCCT-T---EEEEEEESEET
T ss_pred ---------------------eccccccccchhh---------------------hhhh-cccC-c---ceEEEEecccc
Confidence 2333443332111 1111 1111 1 23444556777
Q ss_pred ccc-----ccccCCCcEEEecccccCCCcccccccceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccC
Q psy8733 290 FNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADN 364 (621)
Q Consensus 290 ~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~ 364 (621)
+|. +++++|++++||++|++|+.|+|+++||+.++++||++||+|.+.+++..+.+.+..+..+.+.+|....+.
T Consensus 153 ~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (361)
T d2c0ra1 153 IEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKN 232 (361)
T ss_dssp TTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHT
T ss_pred eecceEEEeeccCCceEEEEeeccccccccccccceeEEEecccccccccCcEEEEEhHHhhhCcccccccccccccccc
Confidence 664 567899999999999999999999999999999999999555555555555444433334444455444455
Q ss_pred CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCC
Q psy8733 365 NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTG 444 (621)
Q Consensus 365 ~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~ 444 (621)
...+.|+++..++++..++.+....|+...+.++++.++..+++.......+......++.||++++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~------------ 300 (361)
T d2c0ra1 233 NSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNIT------------ 300 (361)
T ss_dssp TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEE------------
T ss_pred ccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEE------------
Confidence 66777888888888888888888887888899999999999888888876565566678889988765
Q ss_pred chhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHH
Q psy8733 445 SAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAK 524 (621)
Q Consensus 445 ~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~ 524 (621)
+.. |+
T Consensus 301 -------------------------------------------~~~----------~~---------------------- 305 (361)
T d2c0ra1 301 -------------------------------------------FRL----------AS---------------------- 305 (361)
T ss_dssp -------------------------------------------EEC----------SC----------------------
T ss_pred -------------------------------------------EEC----------CC----------------------
Confidence 111 00
Q ss_pred HHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHH
Q psy8733 525 MEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKE 604 (621)
Q Consensus 525 ~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~ 604 (621)
....++|.+.++++||+..+|||+.|+||||+|++++.||+++|+++|++
T Consensus 306 ------------------------------~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~ 355 (361)
T d2c0ra1 306 ------------------------------EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEH 355 (361)
T ss_dssp ------------------------------HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ------------------------------cccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 01235688899999999999999999999999999999999999999999
Q ss_pred HHHHcC
Q psy8733 605 FRHKHS 610 (621)
Q Consensus 605 ~~~~~~ 610 (621)
|.++++
T Consensus 356 ~~~~~~ 361 (361)
T d2c0ra1 356 FKRSRG 361 (361)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 999874
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=100.00 E-value=7.6e-48 Score=401.33 Aligned_cols=352 Identities=39% Similarity=0.670 Sum_probs=278.8
Q ss_pred CCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 50 HPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 50 ~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+++|||+|||+++|++|+++|.+++.+|.+.|.|+++++|||++|.++++++|++|++|||+|++|.|+|++|++|.
T Consensus 2 ~~~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~--- 78 (360)
T d1w23a_ 2 KQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASL--- 78 (360)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH---
T ss_pred CceeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHH---
Confidence 47999999999999999999999999999999999999999999999999999999999999999889988655555
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
.++++..|+..+++++.++..|.|+.+|...+++.+...+....
T Consensus 79 ----------------------------~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------- 122 (360)
T d1w23a_ 79 ----------------------------QFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAAST-------- 122 (360)
T ss_dssp ----------------------------HHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEEC--------
T ss_pred ----------------------------HHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeecc--------
Confidence 45567788888889999999999999999999988754333211
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
+|.. +..+++.+ ...+.+.++|++|+||+.
T Consensus 123 ------------------------~~~~---------------------~~~~~~~~-----~~~~~~~~~~~~~~tg~~ 152 (360)
T d1w23a_ 123 ------------------------KANS---------------------YQSIPDFS-----EFQLNENDAYLHITSNNT 152 (360)
T ss_dssp ------------------------GGGT---------------------SCSCCCGG-----GCCCCTTEEEEEEESEET
T ss_pred ------------------------cccc---------------------ccchhhhh-----hcccccccceeEecCCcc
Confidence 0110 11121111 122223467888999999
Q ss_pred ccc-----ccccCCCcEEEecccccCCCcccccccceEEeccccccC-CCccEEEEEchhHHhhhCCCCCceeecccccc
Q psy8733 290 FNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINAD 363 (621)
Q Consensus 290 ~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~ 363 (621)
+|+ +++.+|++++|||+|++|+.|+|+++||+.++++||++| |+|.++++.++...++. +..+.+..+....+
T Consensus 153 ~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 231 (360)
T d1w23a_ 153 IYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKV-EQVPTMLQYATHIK 231 (360)
T ss_dssp TTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSCC-TTCCGGGCHHHHHH
T ss_pred ccceeeeeccccceeeEEeeccccccccccccccccceEEeeccccccCCcceeeEechhhhccc-ccCCcchhhhhhhh
Confidence 996 457899999999999999999999999988888888887 66777777766655432 22333334443344
Q ss_pred CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccC
Q psy8733 364 NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQT 443 (621)
Q Consensus 364 ~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~ 443 (621)
.....+||+.....+...++.++.+.++...+.++.+......+........+.....+++.||+++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvs----------- 300 (360)
T d1w23a_ 232 SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVT----------- 300 (360)
T ss_dssp TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEE-----------
T ss_pred hhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEE-----------
Confidence 556678888888888888999998886778888888888888777777766666677788999998776
Q ss_pred CchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChH
Q psy8733 444 GSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLA 523 (621)
Q Consensus 444 ~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~ 523 (621)
+.. |+
T Consensus 301 --------------------------------------------f~i----------~~--------------------- 305 (360)
T d1w23a_ 301 --------------------------------------------FNL----------RN--------------------- 305 (360)
T ss_dssp --------------------------------------------EEC----------SS---------------------
T ss_pred --------------------------------------------EEc----------CC---------------------
Confidence 221 00
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHH
Q psy8733 524 KMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMK 603 (621)
Q Consensus 524 ~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~ 603 (621)
....++|.+.+.++||...+||++.|+||||+||++|.||+++|++||+
T Consensus 306 -------------------------------~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~ 354 (360)
T d1w23a_ 306 -------------------------------EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMI 354 (360)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred -------------------------------CccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHH
Confidence 1234578889999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8733 604 EFRHK 608 (621)
Q Consensus 604 ~~~~~ 608 (621)
+|+++
T Consensus 355 ~~~~~ 359 (360)
T d1w23a_ 355 QFKEN 359 (360)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99986
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9e-48 Score=397.73 Aligned_cols=356 Identities=40% Similarity=0.654 Sum_probs=276.8
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
++|||+|||+++|++|+++|.+++.+|.+.|.|+++++||+++|.++++++|+.|++|||++++++|+|++|++|+
T Consensus 1 ~~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~---- 76 (360)
T d1bjna_ 1 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRG---- 76 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH----
T ss_pred CeEEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHH----
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
.++++..|+.++++.+.++..|.|+.+|...++++|...+....
T Consensus 77 ---------------------------~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 120 (360)
T d1bjna_ 77 ---------------------------QFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAK--------- 120 (360)
T ss_dssp ---------------------------HHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECE---------
T ss_pred ---------------------------HHhhhhhcccccccccceecccchhhhhHHHHhhcCccceeecc---------
Confidence 55567778888888899999999999999999888864333211
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
+|....+ . ......+.+++++++++|++|.||+.+
T Consensus 121 -----------------------~~~~~~~---------------------~-~~~~~~~~~~~~~v~v~~~~~~t~~~~ 155 (360)
T d1bjna_ 121 -----------------------VTVDGLR---------------------A-VKPMREWQLSDNAAYMHYCPNETIDGI 155 (360)
T ss_dssp -----------------------EEETTEE---------------------E-ECCGGGCCCCSSCSCEEECSEETTTTE
T ss_pred -----------------------ccCCCcc---------------------h-hhhhhhhccCCceeEEEecccccccCc
Confidence 1111110 0 011223556777777777777778777
Q ss_pred cc---ccccCCCcEEEecccccCCCcccccccceEEeccccccC-CCccEEEEEchhHHhhhCCCCCceeeccccccCCC
Q psy8733 291 NY---IPDSQGIPLVSDMSSNFLSRKFDVSKFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNS 366 (621)
Q Consensus 291 p~---i~~~~g~llvvDavSs~G~~pIDv~~~gvl~asaqK~lG-P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s 366 (621)
+. .++.+++++++|++|+++..++|++++|+.++|+||++| |+|.++++.+++..+.... ...+.++....+...
T Consensus 156 ~~~~i~~~~~~~~v~vDa~~~~~~~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 234 (360)
T d1bjna_ 156 AIDETPDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIA-CPSILDYSILNDNGS 234 (360)
T ss_dssp ECCCCCCCCTTCCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTT-SCGGGCHHHHHHTTT
T ss_pred cccceecccccceeeeeeeccccceeeeeccceeEEEEcccccccCCCceeEeeehhhhhcccc-CCcchhhHHHHhhhh
Confidence 75 345789999999999999999999999999999999997 8999999999887654322 111222222233344
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccccccCCch
Q psy8733 367 VYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFSHVQTGSA 446 (621)
Q Consensus 367 ~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~~~~~~~~ 446 (621)
.+.|++...+..+..+..++..+++++...+++++++.++++.+...+ .......++.||+++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rs~~v~~-------------- 299 (360)
T d1bjna_ 235 MFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKRNRSRMNVP-------------- 299 (360)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCS-SEECCBCGGGBCSSEEE--------------
T ss_pred hccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccc-cccccCCcccccceEEE--------------
Confidence 444555555555555555555555889999999999999888888876 44555567889988765
Q ss_pred hhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 447 FFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 447 ~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
+.. |
T Consensus 300 -----------------------------------------f~~----------~------------------------- 303 (360)
T d1bjna_ 300 -----------------------------------------FQL----------A------------------------- 303 (360)
T ss_dssp -----------------------------------------EEE----------S-------------------------
T ss_pred -----------------------------------------EEc----------C-------------------------
Confidence 111 0
Q ss_pred HHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHH
Q psy8733 527 QNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFR 606 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~ 606 (621)
+....+.|.+.++++||+..+|||+.|+||||+|+++|.||+++|+++|++|.
T Consensus 304 ---------------------------~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~ 356 (360)
T d1bjna_ 304 ---------------------------DSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFE 356 (360)
T ss_dssp ---------------------------SGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred ---------------------------CcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 01234568889999999999999999999999999999999999999999999
Q ss_pred HHcC
Q psy8733 607 HKHS 610 (621)
Q Consensus 607 ~~~~ 610 (621)
++|+
T Consensus 357 ~~~~ 360 (360)
T d1bjna_ 357 RRHG 360 (360)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 9986
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.5e-47 Score=404.54 Aligned_cols=330 Identities=18% Similarity=0.193 Sum_probs=265.8
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
|||+|||+++|++|+++|.+.. ++||+++|.++++++|+.|+++|+++. +++|++||||+
T Consensus 2 ~L~~PGP~~v~~~V~~am~~~~------------~~hr~~~f~~i~~~~~~~l~~ll~~~~--~~i~~~gsgT~------ 61 (348)
T d1iuga_ 2 WLLTPGPVRLHPKALEALARPQ------------LHHRTEAAREVFLKARGLLREAFRTEG--EVLILTGSGTL------ 61 (348)
T ss_dssp EECSSSSCCCCHHHHHHHHSCC------------CCTTSHHHHHHHHHHHHHHHHHHTCSS--EEEEEESCHHH------
T ss_pred cccCCCCCCCCHHHHHHhcCCC------------CCCCCHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCchHH------
Confidence 7999999999999999998764 799999999999999999999999854 78888999999
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
+||+++.|++.+|++++++.+|.||++|.+.++++|....+
T Consensus 62 -------------------------a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~-------------- 102 (348)
T d1iuga_ 62 -------------------------AMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVER-------------- 102 (348)
T ss_dssp -------------------------HHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEE--------------
T ss_pred -------------------------HHHHHHHhcccccccceeecchHHHHHHHHHHHhcCccccc--------------
Confidence 77788999999999999999999999999999999864332
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
++.+|++.+++ +. ..++++++|++||+||++|+.+|+
T Consensus 103 ------------------~~~~~g~~~~~------------------------~~-~~~~~~~~v~~~h~eTstG~~~~i 139 (348)
T d1iuga_ 103 ------------------LDYPYGDTPRP------------------------ED-VAKEGYAGLLLVHSETSTGALADL 139 (348)
T ss_dssp ------------------EECCTTCCCCT------------------------TT-SCCSSCSEEEEESEETTTTEECCH
T ss_pred ------------------ccccCCCcccc------------------------cc-ccccCCCeeEEEecchhhhhhccH
Confidence 33345543321 11 235688999999999999999996
Q ss_pred --c---cc--cCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCCceeecccc-
Q psy8733 293 --I---PD--SQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKIN- 361 (621)
Q Consensus 293 --i---~~--~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~~ld~~~~- 361 (621)
+ ++ ..++++++|++|++|+.|+|+++|+ ++++|+|||| ||||+|++++|+++++++++ .+.|+|+..+
T Consensus 140 ~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~-~~~~~dl~~~~ 218 (348)
T d1iuga_ 140 PALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP-RGYYLDLAREL 218 (348)
T ss_dssp HHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC-CSSTTCHHHHH
T ss_pred HHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhcc-cccccchhhhh
Confidence 3 33 3568999999999999999999875 9999999999 79999999999999998865 3446666542
Q ss_pred --ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcccccccccc
Q psy8733 362 --ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTFS 439 (621)
Q Consensus 362 --~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~~ 439 (621)
.+++.+++|||+..|++|.+||+++.++ |.+. .++++.....+++.+++. |+...+ +.||+.++ ++
T Consensus 219 ~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~-gl~~~~---~~~s~~v~------~~ 286 (348)
T d1iuga_ 219 KAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEH-LALKAWQNALLYGVGEEG-GLRPVP---KRFSPAVA------AF 286 (348)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHH-HHHHHHHHHHHHHHHHHT-TCEESC---SSBCTTCE------EE
T ss_pred hhhccCcccccccchHHHHHHHHHHHHHHH-HhHH-HHHHHHHHHHHhhhhhhh-hhccCh---hhcCCeEE------EE
Confidence 3467889999999999999999999887 5444 455565666777777665 465443 45776533 33
Q ss_pred cccCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhc
Q psy8733 440 HVQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ 519 (621)
Q Consensus 440 ~~~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~ 519 (621)
.+|+|.
T Consensus 287 ~~P~g~-------------------------------------------------------------------------- 292 (348)
T d1iuga_ 287 YLPEGV-------------------------------------------------------------------------- 292 (348)
T ss_dssp ECCTTC--------------------------------------------------------------------------
T ss_pred ECCCCC--------------------------------------------------------------------------
Confidence 333221
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCc--cceeeccCCCHHHHHH
Q psy8733 520 GGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGG--IRASIYNAITVDEAVI 597 (621)
Q Consensus 520 gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~--~r~~~~~a~~~~~~~~ 597 (621)
-.+.|.+.++++||+...||+...+ |||+++..++.++++.
T Consensus 293 -------------------------------------~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~ 335 (348)
T d1iuga_ 293 -------------------------------------PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALG 335 (348)
T ss_dssp -------------------------------------CHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHH
T ss_pred -------------------------------------CHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHH
Confidence 1235777888999999999998543 9999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8733 598 LVKFMKEFRHK 608 (621)
Q Consensus 598 l~~~~~~~~~~ 608 (621)
+++.|++.-++
T Consensus 336 ~~~~l~~~l~~ 346 (348)
T d1iuga_ 336 VAGMFREVLEE 346 (348)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987543
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.1e-43 Score=368.18 Aligned_cols=283 Identities=14% Similarity=0.204 Sum_probs=229.5
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
+.++|+|||+++|++|+++|.... ++|||++|.++++++|+.|+++||+|++|+|+| +||||+
T Consensus 19 ~~~l~~pGP~~~~~~Vl~am~~~~------------i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~-~gsgT~---- 81 (388)
T d1h0ca_ 19 NQLLLGPGPSNLPPRIMAAGGLQM------------IGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVI-SGSGHC---- 81 (388)
T ss_dssp CCEECSSSCCCCCHHHHHHHTCCC------------CCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEE-SSCHHH----
T ss_pred cCccccCCCCCCCHHHHHHhCcCC------------CCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEE-cCcHHH----
Confidence 468999999999999999986432 799999999999999999999999999988876 689999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
+|++++.|++.+|++++++.+|.|+.+|...+++.+.....
T Consensus 82 ---------------------------a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 122 (388)
T d1h0ca_ 82 ---------------------------ALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHP------------ 122 (388)
T ss_dssp ---------------------------HHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBC------------
T ss_pred ---------------------------HHHHHHHHhhccCCceeeecccceeeeeccccccccccccc------------
Confidence 66778889999999999999999999999998888753221
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
+..+|+..++.+.+ .....++++++|+++|++|++|+++
T Consensus 123 --------------------~~~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~~n~tG~i~ 161 (388)
T d1h0ca_ 123 --------------------MTKDPGGHYTLQEV---------------------EEGLAQHKPVLLFLTHGESSTGVLQ 161 (388)
T ss_dssp --------------------CBCCTTCCCCHHHH---------------------HHHHHHHCCSEEEEESEETTTTEEC
T ss_pred --------------------cccCCccccchHHH---------------------HHHhccCCcceEEEeeeeecccccc
Confidence 22223332222221 1112345789999999999999999
Q ss_pred cc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCCCCC----ceeec
Q psy8733 291 NY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALPITP----TVFHF 358 (621)
Q Consensus 291 p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~~~P----~~ld~ 358 (621)
|+ +++++|++++||++|++|+.|+|+++++ ++++|+|||+| |+|+|+++++++.++.+.+..+ .++++
T Consensus 162 pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1h0ca_ 162 PLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDI 241 (388)
T ss_dssp CCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCH
T ss_pred CHHHHHHHhhcccccceeccccccccccccccccccceecccccccccCCCceEEEeecHHHHHhhhhcccccccccccc
Confidence 97 4568999999999999999999999986 99999999995 9999999999999988765321 23332
Q ss_pred ccc-------ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcc
Q psy8733 359 KIN-------ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNV 431 (621)
Q Consensus 359 ~~~-------~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv 431 (621)
... ...+...+||++..++++.++++++.+. |++.++++..++++++++.+++++ ++....+++.||++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~-g~~~~~~~~~~l~~~l~~~~~~~g-~~~~~~~~~~rs~~i~ 319 (388)
T d1h0ca_ 242 KWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQ-GLENSWRQHREAAAYLHGRLQALG-LQLFVKDPALRLPTVT 319 (388)
T ss_dssp HHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHT-CCBSSCSGGGBCTTEE
T ss_pred chhhhhhhhccccccccccccHHHHHHHHHHHHHHHHh-ccccccccccchhHHHHHHHhhcC-cccccCCHHHcCCeEE
Confidence 211 1223455799999999999999999998 899999999999999999999986 6666667888998765
Q ss_pred c
Q psy8733 432 T 432 (621)
Q Consensus 432 ~ 432 (621)
+
T Consensus 320 ~ 320 (388)
T d1h0ca_ 320 T 320 (388)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=100.00 E-value=1.5e-42 Score=365.10 Aligned_cols=283 Identities=18% Similarity=0.274 Sum_probs=229.1
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
+.+||+|||+++|++|++||.++. ++||+++|.++++++|++|+++||+++ ++++|++||||+
T Consensus 17 ~~~l~~PGP~~~~~~V~~Am~~~~------------~~hr~~ef~~i~~~~r~~L~~ll~~~~-~~~i~~~gsgT~---- 79 (388)
T d2ch1a1 17 EKIMMGPGPSNCSKRVLTAMTNTV------------LSNFHAELFRTMDEVKDGLRYIFQTEN-RATMCVSGSAHA---- 79 (388)
T ss_dssp CCBCCSSSSCCCCHHHHHHTTSCC------------CCTTCHHHHHHHHHHHHHHHHHHTCCC-SCEEEESSCHHH----
T ss_pred cceeeeCCCCCCCHHHHHHhCcCC------------CCCCCHHHHHHHHHHHHHHHHHhCCCC-CeEEEEcCcHHH----
Confidence 458999999999999999986543 799999999999999999999999975 578888999999
Q ss_pred HHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCC
Q psy8733 131 VAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPD 210 (621)
Q Consensus 131 ~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~ 210 (621)
+|++++.|++.++++++++.+|.|+++|...+++++.......
T Consensus 80 ---------------------------a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~---------- 122 (388)
T d2ch1a1 80 ---------------------------GMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIE---------- 122 (388)
T ss_dssp ---------------------------HHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEE----------
T ss_pred ---------------------------HHHHHHHHhccccccccccccccccccchhhhhhhcccccccc----------
Confidence 6777899999999999999999999999999999986543322
Q ss_pred CCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccc
Q psy8733 211 QSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEF 290 (621)
Q Consensus 211 ~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~ 290 (621)
.+|+...+.+.+ .....+.++++++++|+||++|+.+
T Consensus 123 ----------------------~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~~t~tG~~~ 159 (388)
T d2ch1a1 123 ----------------------GPPDRPFSLETL---------------------ARAIELHQPKCLFLTHGDSSSGLLQ 159 (388)
T ss_dssp ----------------------CCTTSCCCHHHH---------------------HHHHHHHCCSEEEEESEETTTTEEC
T ss_pred ----------------------cccccccchhhh---------------------hhhhccCCcceeeeeeccccccccc
Confidence 112222211110 1112345789999999999999999
Q ss_pred cc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCC----Cceeec
Q psy8733 291 NY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPIT----PTVFHF 358 (621)
Q Consensus 291 p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~----P~~ld~ 358 (621)
|+ +++.++++++||++|++|+.|+|+++|+ ++++|+|||+ ||+|+|++++|+++++++.+.. ..+.++
T Consensus 160 ~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
T d2ch1a1 160 PLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDL 239 (388)
T ss_dssp CCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCH
T ss_pred chhhhcchhccccceeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccc
Confidence 96 3468999999999999999999999987 9999999999 5999999999999998765532 112221
Q ss_pred c-------ccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcc
Q psy8733 359 K-------INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNV 431 (621)
Q Consensus 359 ~-------~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv 431 (621)
. ...+.+.+++||++..++++.++++++.+. |.+...++.+++..+++..+...+ ++....+++.||++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rs~~v~ 317 (388)
T d2ch1a1 240 LLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEE-GLENQIKRRIECAQILYEGLGKMG-LDIFVKDPRHRLPTVT 317 (388)
T ss_dssp HHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHT-CCBSSCSGGGBCTTEE
T ss_pred hhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhhhhhcc-cccccCCHHHhCCeEE
Confidence 1 122345678999999999999999999987 899999999999988888888875 6666668889998876
Q ss_pred c
Q psy8733 432 T 432 (621)
Q Consensus 432 ~ 432 (621)
+
T Consensus 318 ~ 318 (388)
T d2ch1a1 318 G 318 (388)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-41 Score=358.21 Aligned_cols=283 Identities=18% Similarity=0.229 Sum_probs=217.9
Q ss_pred ceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCC--CCCCEEEEEcCCcchhhh
Q psy8733 52 VINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNV--PNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 52 ~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~--p~~yeI~f~~gggT~~~~ 129 (621)
-+||+|||+++|++|++||..+. ++||+++|.++++++++.+++++++ +.++++++++||||++|+
T Consensus 4 ~~l~~PGP~~v~~~V~~Am~~~~------------~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~ 71 (382)
T d2bkwa1 4 DTLLIPGPIILSGAVQKALDVPS------------LGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWD 71 (382)
T ss_dssp CEECSSSSCCCCHHHHHTTSCCC------------CCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHH
T ss_pred ccccCCCCCCCCHHHHHHhCccc------------CCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHH
Confidence 47999999999999999985432 7899999999999999999999996 445677777899999444
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhh---CCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccc
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLI---GRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~---~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
+++.||+ ++||+++++.+|.|+++|...++++|.......
T Consensus 72 -------------------------------~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~------ 114 (382)
T d2bkwa1 72 -------------------------------IFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVR------ 114 (382)
T ss_dssp -------------------------------HHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEEC------
T ss_pred -------------------------------HHHHHHHHhcCCCCceEEEEechhhhhhhhhcccccccccccc------
Confidence 4556654 467888888899999999999999886543321
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVD 286 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~t 286 (621)
..+|+...+.+.+ ++...++++++++++|++|+|
T Consensus 115 -------------------------~~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~~~~t 148 (382)
T d2bkwa1 115 -------------------------PLKIGESVPLELI---------------------TEKLSQNSYGAVTVTHVDTST 148 (382)
T ss_dssp -------------------------CSSTTSCCCHHHH---------------------HHHHHHSCCSEEEEESEETTT
T ss_pred -------------------------ccCCCCccchhHH---------------------HHHhhhccchheeeeeccccc
Confidence 1223332222221 111234578999999999999
Q ss_pred cccccc--c---c--ccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCC----
Q psy8733 287 GVEFNY--I---P--DSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPIT---- 352 (621)
Q Consensus 287 Gv~~p~--i---~--~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~---- 352 (621)
|+.+|+ + + +.++++++||++|++|+.|+|+++|| ++++|+|||+ ||+|+|++++|+++++++.+..
T Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~ 228 (382)
T d2bkwa1 149 AVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGH 228 (382)
T ss_dssp TEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCC
T ss_pred cccccchhhhhhccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCC
Confidence 999996 2 2 25679999999999999999999986 9999999999 6999999999999999886632
Q ss_pred -Ccee-eccc--------cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCc-c
Q psy8733 353 -PTVF-HFKI--------NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP-V 421 (621)
Q Consensus 353 -P~~l-d~~~--------~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~-~ 421 (621)
+.|+ +... ....+.+++|||+..+++|.+||+|+.++ |++++.++++++++++++.+....++.... .
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~-g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 307 (382)
T d2bkwa1 229 VHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEE-GLHKRWDLHREMSDWFKDSLVNGLQLTSVSRY 307 (382)
T ss_dssp CSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTTTCCEESSCS
T ss_pred cccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHhhhcccccccccC
Confidence 1221 1111 12345678999999999999999999999 899999999999999999998765554433 2
Q ss_pred CCCCCCCCc
Q psy8733 422 QAGCRSRMN 430 (621)
Q Consensus 422 ~~~~RS~~n 430 (621)
++..||+++
T Consensus 308 ~~~~~s~~v 316 (382)
T d2bkwa1 308 PSNMSAHGL 316 (382)
T ss_dssp SSTTBCSSC
T ss_pred chhccCCcE
Confidence 334555543
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=100.00 E-value=5.4e-41 Score=350.96 Aligned_cols=285 Identities=18% Similarity=0.229 Sum_probs=226.0
Q ss_pred CCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchh
Q psy8733 48 AAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGM 127 (621)
Q Consensus 48 ~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~ 127 (621)
..++.+||+|||+++|++|++||..+ +++||+++|.++++++|++|+++||+|++|.|+| +||||+
T Consensus 15 ~~p~~~l~~PGP~~v~~~Vl~am~~~------------~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~-~g~gT~- 80 (377)
T d1vjoa_ 15 EVPSRLLLGPGPSNAHPSVLQAMNVS------------PVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAV-SGTGTA- 80 (377)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHHSSC------------CCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEE-SSCHHH-
T ss_pred CCCcceeecCCCCCCCHHHHHHhCcC------------CCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEE-cCcHHH-
Confidence 33567999999999999999997543 4899999999999999999999999999887655 789999
Q ss_pred hhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccc
Q psy8733 128 FAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 128 ~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
+|++++.|++.+++++.+..+++|+..+...+++.+........
T Consensus 81 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 124 (377)
T d1vjoa_ 81 ------------------------------AMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISK------ 124 (377)
T ss_dssp ------------------------------HHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC------
T ss_pred ------------------------------HHHHHHHhccccccccceeeechhhhhhhhhhhhhccccccccc------
Confidence 67778899999999999999999999998888888764433221
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
+++.....+. ......++++++|+++|++|++|
T Consensus 125 --------------------------~~~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~~~~tg 157 (377)
T d1vjoa_ 125 --------------------------PWGEVFSLEE---------------------LRTALETHRPAILALVHAETSTG 157 (377)
T ss_dssp --------------------------CTTCCCCHHH---------------------HHHHHHHHCCSEEEEESEETTTT
T ss_pred --------------------------CCCCcccchh---------------------hhhhhhcCcceeeeeeeeeccce
Confidence 1111111000 01112345789999999999999
Q ss_pred ccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCCceeecc
Q psy8733 288 VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFK 359 (621)
Q Consensus 288 v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~~ld~~ 359 (621)
+++|+ +++++|+++++||+|++|+.++|+++++ ++++|+|||+ ||+|+|++++++++++...+.......+.
T Consensus 158 ~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (377)
T d1vjoa_ 158 ARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWY 237 (377)
T ss_dssp EECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCST
T ss_pred eeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCccee
Confidence 99997 3467899999999999999999999997 9999999999 59999999999999987765432211111
Q ss_pred c--------cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCcc
Q psy8733 360 I--------NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNV 431 (621)
Q Consensus 360 ~--------~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv 431 (621)
. ......+.+||++..++++..+++.+.++ |++.+.++.++++.++++.++..+ +... .+++.||++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~~~~~~~~~~~~~~l~~~l~~~~-~~~~-~~~~~rs~~v~ 314 (377)
T d1vjoa_ 238 LDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQE-GLANCWQRHQKNVEYLWERLEDIG-LSLH-VEKEYRLPTLT 314 (377)
T ss_dssp TCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHTT-CCBS-SCGGGBCSSEE
T ss_pred eccchhhhccCcccccccccceechhhhHHHHhhhhhc-CchHHHHHHHHHhhhhhhhhhccC-ceee-cChHhcCCeEE
Confidence 1 12234556789999999999988888887 999999999999999999999875 4443 46788999876
Q ss_pred c
Q psy8733 432 T 432 (621)
Q Consensus 432 ~ 432 (621)
+
T Consensus 315 ~ 315 (377)
T d1vjoa_ 315 T 315 (377)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.6e-40 Score=343.12 Aligned_cols=341 Identities=18% Similarity=0.200 Sum_probs=264.3
Q ss_pred eeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHH
Q psy8733 53 INFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVA 132 (621)
Q Consensus 53 ~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~a 132 (621)
.||+|||+++|+.|++||.+.. ++||+++|.++++++|++|++++|+++++.+++++||||+
T Consensus 2 ~l~~pGP~~~~~~V~~A~~~~~------------~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~------ 63 (361)
T d1m32a_ 2 LLLTPGPLTTSRTVKEAMLFDS------------CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSY------ 63 (361)
T ss_dssp EECSSSSCCCCHHHHHTTCCCC------------CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHH------
T ss_pred ccccCCCCCCCHHHHHHhhhhc------------cCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHH------
Confidence 5899999999999999876532 6899999999999999999999999998888888899999
Q ss_pred HHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCC
Q psy8733 133 MNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQS 212 (621)
Q Consensus 133 lNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~ 212 (621)
++++++.|+..+++++.++..+.|...+...+++.+....+....
T Consensus 64 -------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 108 (361)
T d1m32a_ 64 -------------------------AVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCG---------- 108 (361)
T ss_dssp -------------------------HHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECC----------
T ss_pred -------------------------HHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhccccccccc----------
Confidence 455567788877888888888999887777777776533222110
Q ss_pred CCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEecccccccccccc
Q psy8733 213 TWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY 292 (621)
Q Consensus 213 ~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~ 292 (621)
+......+. .......++++++|+++|++|+||+.+|+
T Consensus 109 ----------------------~~~~~~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~tG~~~~i 146 (361)
T d1m32a_ 109 ----------------------EVARPDVQA--------------------IDAILNADPTISHIAMVHSETTTGMLNPI 146 (361)
T ss_dssp ----------------------TTSCCCHHH--------------------HHHHHHHCTTCCEEEEESEETTTTEECCH
T ss_pred ----------------------ccCCccchh--------------------hHHHHHhccCccceEEEeeecccccchhh
Confidence 000000000 00011356789999999999999999996
Q ss_pred -----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCccEEEEEchhHHhhhCCCCCcee---ecc--
Q psy8733 293 -----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVF---HFK-- 359 (621)
Q Consensus 293 -----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~Glg~livr~~ll~~~~~~~P~~l---d~~-- 359 (621)
+++++|+++++|++|++|+.|+|+++++ ++++|+|||+ ||+|+|++++|++.+++..+...... +..
T Consensus 147 ~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (361)
T d1m32a_ 147 DEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWR 226 (361)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHH
T ss_pred hhhhhhhcccceeeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhc
Confidence 3467899999999999999999999987 9999999999 69999999999999998776433211 000
Q ss_pred -ccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCCccccccccc
Q psy8733 360 -INADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRMNVTDIFFTF 438 (621)
Q Consensus 360 -~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~nv~~~~~t~ 438 (621)
.........+||++..++++..+++++.++|+.+.+.++.+++++.+++.++..+ +.. ..+++.||+++++
T Consensus 227 ~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~-~~~~~~rs~~v~~------ 298 (361)
T d1m32a_ 227 CMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALG-FNT-LLDDELHSPIITA------ 298 (361)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT-CCB-SSCGGGBCSSEEE------
T ss_pred cccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcC-Ccc-cCChhhcCCcEEE------
Confidence 0112345568999999999999999999997789999999999999999999886 433 3456778877544
Q ss_pred ccccCCchhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHh
Q psy8733 439 SHVQTGSAFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKR 518 (621)
Q Consensus 439 ~~~~~~~~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~ 518 (621)
+..|++.
T Consensus 299 ~~~p~~~------------------------------------------------------------------------- 305 (361)
T d1m32a_ 299 FYSPEDP------------------------------------------------------------------------- 305 (361)
T ss_dssp EECCCCT-------------------------------------------------------------------------
T ss_pred EECCCCC-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCcccHHHHHHHHHccCccccCCCCCCc-cceeeccCCCHHHHHH
Q psy8733 519 QGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGFPLDELFLKEAKAHNMIQLKGHRLVGG-IRASIYNAITVDEAVI 597 (621)
Q Consensus 519 ~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~-~r~~~~~a~~~~~~~~ 597 (621)
.....+|.+.++++||+...|+...++ ||||+|+.++.+|+++
T Consensus 306 ------------------------------------~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~ 349 (361)
T d1m32a_ 306 ------------------------------------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITA 349 (361)
T ss_dssp ------------------------------------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHH
T ss_pred ------------------------------------CCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHH
Confidence 012346788899999999999888555 8999999999999999
Q ss_pred HHHHHHHH
Q psy8733 598 LVKFMKEF 605 (621)
Q Consensus 598 l~~~~~~~ 605 (621)
|++.|++.
T Consensus 350 lv~al~~~ 357 (361)
T d1m32a_ 350 LLTAIRTA 357 (361)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999975
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.2e-34 Score=303.66 Aligned_cols=304 Identities=17% Similarity=0.162 Sum_probs=225.2
Q ss_pred ccccccccchhhhhhccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccC-CCcccccccccHHHHHHHHHHHHHHHHH
Q psy8733 30 IIRNTYLDSRIHTTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYEST-GISVMEMSHRSADYTKINNDTQAALREL 108 (621)
Q Consensus 30 ~~~~~~~~~~~~~~~m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~-g~sv~e~shrs~~f~~i~~~ar~~La~L 108 (621)
.+|..|| .+.++. ... +.+||++||.+++|++|++++.+++++...+ +.+ .+..+.+..+.++++|+.++++
T Consensus 6 ~vR~~FP--~l~~~~-~~~-~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~---~~~~~~~~~~~~e~~R~~ia~~ 78 (405)
T d1jf9a_ 6 KVRADFP--VLSREV-NGL-PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRG---IHTLSAQATEKMENVRKRASLF 78 (405)
T ss_dssp HHHHTCG--GGGCEE-TTE-ECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSC---SSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCh--hcccCc-CCC-CeEEEeCccccCCCHHHHHHHHHHHHhccCCCccc---hhHHHHHHHHHHHHHHHHHHHH
Confidence 4677666 333321 111 3589999999999999999999998775433 222 2223556778999999999999
Q ss_pred hCCCCCCEEEEEcCCcchhhhHHHHHHhhhc---cCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHH
Q psy8733 109 LNVPNNYKILFLQGGGTGMFAAVAMNLISSS---MNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKA 185 (621)
Q Consensus 109 l~~p~~yeI~f~~gggT~~~~a~alNlla~~---~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~ 185 (621)
+|+.++++|+|+ .++|+ ++|+++.+ +.+++||+|++... .+ +.|. ..|
T Consensus 79 l~~~~~~~i~~~-~~~T~-----~~~~~~~~~~~~~~~~g~~il~~~~----e~---~s~~----------------~~~ 129 (405)
T d1jf9a_ 79 INARSAEELVFV-RGTTE-----GINLVANSWGNSNVRAGDNIIISQM----EH---HANI----------------VPW 129 (405)
T ss_dssp TTCSCGGGEEEE-SSHHH-----HHHHHHHHHHHHHCCTTCEEEEETT----CC---GGGT----------------HHH
T ss_pred cCCCCccccccc-CcHHH-----HHHHHHhcccccccCCCCEEEEEeC----cc---cchH----------------HHH
Confidence 998766689987 56888 78888776 46888999988764 22 2232 236
Q ss_pred HHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCc
Q psy8733 186 AAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQ 265 (621)
Q Consensus 186 ~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~ 265 (621)
...+++.|.....++.. ..+.+ +.
T Consensus 130 ~~~a~~~g~~v~~~~~~-------------------------------------------------------~~g~~-~~ 153 (405)
T d1jf9a_ 130 QMLCARVGAELRVIPLN-------------------------------------------------------PDGTL-QL 153 (405)
T ss_dssp HHHHHHHTCEEEEECBC-------------------------------------------------------TTSCB-CG
T ss_pred HHHHHHcCcEEEEECCC-------------------------------------------------------CCCcC-CH
Confidence 77888999765443311 00011 11
Q ss_pred cc--cCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccE
Q psy8733 266 ST--WNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGIT 336 (621)
Q Consensus 266 ~~--l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg 336 (621)
+. ..++++|++|+++|+++.+|+++|+ +++++|++++||++|++|+.|+|+++++ ++++|+|||+||+|+|
T Consensus 154 ~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g 233 (405)
T d1jf9a_ 154 ETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIG 233 (405)
T ss_dssp GGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCE
T ss_pred HHHHHhccCCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCCce
Confidence 11 2478899999999999999999997 4568999999999999999999999886 9999999999999999
Q ss_pred EEEEchhHHhhhCCCCCce-----eeccc---ccc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8733 337 VVIVREDLLEYALPITPTV-----FHFKI---NAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~-----ld~~~---~~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L 406 (621)
++|+++++++.+.+..... .+... ..+ .....+|+|+.+++++.+|++++.+. |++.+.++...+++++
T Consensus 234 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~L~~~~ 312 (405)
T d1jf9a_ 234 ILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSAL-GLNNIAEYEQNLMHYA 312 (405)
T ss_dssp EEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHH
T ss_pred eeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence 9999999988766532211 01110 011 12235899999999999999999999 8999999999999999
Q ss_pred HHHHHccCCcccCccCCCCCCC
Q psy8733 407 YQEIDNSDKFYECPVQAGCRSR 428 (621)
Q Consensus 407 ~e~L~~~~g~~~~~~~~~~RS~ 428 (621)
.+.+...+..... .++.|++
T Consensus 313 ~~~l~~~~~~~~~--~~~~r~~ 332 (405)
T d1jf9a_ 313 LSQLESVPDLTLY--GPQNRLG 332 (405)
T ss_dssp HHHHTTSTTEEEE--SCTTCCS
T ss_pred HhhhhcCCccccc--CCcCcCc
Confidence 9999988743322 3445654
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=1.3e-33 Score=301.86 Aligned_cols=298 Identities=15% Similarity=0.140 Sum_probs=221.1
Q ss_pred ccccccccchhhhhhccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCccccccc-ccHHHHHHHHHHHHHHHHH
Q psy8733 30 IIRNTYLDSRIHTTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSH-RSADYTKINNDTQAALREL 108 (621)
Q Consensus 30 ~~~~~~~~~~~~~~~m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~sh-rs~~f~~i~~~ar~~La~L 108 (621)
.+|..|| .+.++. ...+.+||+++|.+++|++|++++.+++.++.++. ++..| .+.+..++++++|+.++++
T Consensus 6 ~iR~~FP--~l~~~~--~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~---~s~~~~~~~~~~~~~e~aR~~ia~l 78 (408)
T d1t3ia_ 6 TVRQDFP--ILNQEI--NGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANV---HRGAHQLSVRATDAYEAVRNKVAKF 78 (408)
T ss_dssp HHGGGCG--GGSCEE--TTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC-----CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCc--cccccc--CCCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCC---CchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4788886 332221 11135899999999999999999999998765432 22233 3667789999999999999
Q ss_pred hCCCCCCEEEEEcCCcchhhhHHHHHHhhhc---cCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHH
Q psy8733 109 LNVPNNYKILFLQGGGTGMFAAVAMNLISSS---MNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKA 185 (621)
Q Consensus 109 l~~p~~yeI~f~~gggT~~~~a~alNlla~~---~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~ 185 (621)
+|++++..|+|+ +++|+ ++|+++.+ ..+++||+|+++.. .+ +.++ ..|
T Consensus 79 lga~~~~~i~~~-~~tt~-----~~n~~~~~~~~~~~~~g~~il~s~~----e~---~s~~----------------~~~ 129 (408)
T d1t3ia_ 79 INARSPREIVYT-RNATE-----AINLVAYSWGMNNLKAGDEIITTVM----EH---HSNL----------------VPW 129 (408)
T ss_dssp TTCSCGGGEEEE-SSHHH-----HHHHHHHHTHHHHCCTTCEEEEETT----CC---GGGT----------------HHH
T ss_pred hCCCCcccEEee-cchHH-----HHHHHHhhccccccCCCCEEEeecc----cc---hhhh----------------hhh
Confidence 999866566665 67888 78888876 36889999988864 22 1222 225
Q ss_pred HHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCc
Q psy8733 186 AAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQ 265 (621)
Q Consensus 186 ~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~ 265 (621)
...+++.|......+.. ....++.|.+
T Consensus 130 ~~~~~~~g~~v~~~~~~--------------------------------~~~~~~~~~l--------------------- 156 (408)
T d1t3ia_ 130 QMVAAKTGAVLKFVQLD--------------------------------EQESFDLEHF--------------------- 156 (408)
T ss_dssp HHHHHHHCCEEEEECBC--------------------------------TTSSBCHHHH---------------------
T ss_pred hhhhhccCceEeeeecc--------------------------------ccccccHHHh---------------------
Confidence 56777888654443311 0000011110
Q ss_pred cccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEE
Q psy8733 266 STWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVV 338 (621)
Q Consensus 266 ~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~l 338 (621)
.-.++++|++|+++|+++.+|+.+|+ +++.+|++++||++|++|+.|+|+++++ ++++|+|||+||+|+|++
T Consensus 157 -~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l 235 (408)
T d1t3ia_ 157 -KTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFL 235 (408)
T ss_dssp -HHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEE
T ss_pred -hhccCCCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccCCceEEeccccccCCCCcccc
Confidence 01367899999999999999999996 3568999999999999999999999875 999999999999999999
Q ss_pred EEchhHHhhhCCCCCce--e--------eccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 339 IVREDLLEYALPITPTV--F--------HFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~--l--------d~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
+++++.+.+..|..... . .+.. ...+...+|||+.+++++.++++++.+. |+++++++...+.+++++
T Consensus 236 ~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~~~r~e~Gt~~~~~~~~l~~al~~~~~~-g~~~i~~~~~~l~~~l~~ 313 (408)
T d1t3ia_ 236 YGKEEILEAMPPFFGGGEMIAEVFFDHFTTGE-LPHKFEAGTPAIAEAIALGAAVDYLTDL-GMENIHNYEVELTHYLWQ 313 (408)
T ss_dssp EECHHHHHHSCCCSCSTTSEEEECSSCEEECC-TTGGGCCSSCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhcCCceecCCcccccccccccccCC-chhhhcCCcHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHhHHhh
Confidence 99999988765532210 0 0000 1112346899999999999999999999 999999999999999999
Q ss_pred HHHccCCcccC
Q psy8733 409 EIDNSDKFYEC 419 (621)
Q Consensus 409 ~L~~~~g~~~~ 419 (621)
.+...++....
T Consensus 314 ~~~~~~~~~~~ 324 (408)
T d1t3ia_ 314 GLGQIPQLRLY 324 (408)
T ss_dssp HHHTCTTEEEE
T ss_pred hhccCcccccc
Confidence 99998876554
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=1.3e-31 Score=281.21 Aligned_cols=289 Identities=15% Similarity=0.094 Sum_probs=218.5
Q ss_pred ccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Q psy8733 45 MSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGG 124 (621)
Q Consensus 45 m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~ggg 124 (621)
+|...+++||+++|.+++|+.|+++|.+++.++...|.. ..+.+..+.+.++++|+.|++++|++.+ +|+|+ .||
T Consensus 2 fp~l~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~la~~~~~~~~-~i~~~-~g~ 76 (381)
T d1elua_ 2 FPGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPF---SIAANQHIQQLIAQLRQALAETFNVDPN-TITIT-DNV 76 (381)
T ss_dssp CGGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSS---SHHHHHHHHHHHHHHHHHHHHHTTSCGG-GEEEE-SSH
T ss_pred CCCCCCCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCc---cchhhHHHHHHHHHHHHHHHHHhCCCcc-cEEEE-CCh
Confidence 455557899999999999999999999998877654422 1233556778899999999999999765 79987 568
Q ss_pred chhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccc
Q psy8733 125 TGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSK 204 (621)
Q Consensus 125 T~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~ 204 (621)
|+ ++|++++++.+++||+|++... .|.+ +-..|...+++.|......+...
T Consensus 77 t~-----a~~~~~~~l~~~~g~~i~~~~~----~~~s-------------------~~~~~~~~~~~~g~~~~~v~~~~- 127 (381)
T d1elua_ 77 TT-----GCDIVLWGLDWHQGDEILLTDC----EHPG-------------------IIAIVQAIAARFGITYRFFPVAA- 127 (381)
T ss_dssp HH-----HHHHHHHHSCCCTTCEEEEETT----CCHH-------------------HHHHHHHHHHHHCCEEEEECCGG-
T ss_pred HH-----HhhhcchhhhhcCCceEEEecc----ccce-------------------eeecccccccccccccccccccc-
Confidence 98 7899999999999999999865 3322 11224556778887544433110
Q ss_pred ccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccc--cCCCCCceEEEEecc
Q psy8733 205 YVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQST--WNRDPEASYLYYCDN 282 (621)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~--l~i~~~t~~V~~thn 282 (621)
+.. .....+. -.+++++++|++++.
T Consensus 128 ------------------------------~~~-----------------------~~~~~~~l~~~i~~~t~~v~i~~~ 154 (381)
T d1elua_ 128 ------------------------------TLN-----------------------QGDAAAVLANHLGPKTRLVILSHL 154 (381)
T ss_dssp ------------------------------GSS-----------------------SSCHHHHHHTTCCTTEEEEEEESB
T ss_pred ------------------------------ccc-----------------------cchHHHHHHhhhcccccccccccc
Confidence 000 0000111 146789999999999
Q ss_pred cccccccccc-----cccc----CCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEchhHHhhhCC
Q psy8733 283 ETVDGVEFNY-----IPDS----QGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVREDLLEYALP 350 (621)
Q Consensus 283 ET~tGv~~p~-----i~~~----~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~~ll~~~~~ 350 (621)
.|.||+..|+ ++++ .++++++|++|++|+.|+|+++++ ++++|+|||++ |+|+|+++++++.++++.|
T Consensus 155 ~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p 234 (381)
T d1elua_ 155 LWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINP 234 (381)
T ss_dssp CTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCC
T ss_pred cccccccchhhHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccchhhHHHhhHHHHHhcCc
Confidence 9999999995 3332 579999999999999999999876 99999999995 9999999999999988766
Q ss_pred CCCcee--eccc------ccc--CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCc
Q psy8733 351 ITPTVF--HFKI------NAD--NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECP 420 (621)
Q Consensus 351 ~~P~~l--d~~~------~~~--~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~ 420 (621)
....+. .+.. ... .....+||++..++++.+|++++.+.|..+.+.++..++++++++.|++++|+....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 314 (381)
T d1elua_ 235 TYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLA 314 (381)
T ss_dssp CSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESC
T ss_pred ccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecC
Confidence 432211 1010 011 123457999999999999999999997678888999999999999999998876653
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.6e-27 Score=251.24 Aligned_cols=283 Identities=15% Similarity=0.128 Sum_probs=205.6
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHR-SADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shr-s~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
.+|||++|.+|+|+.|+++|.+++.+....| ++++..|+ +..+.++++++|+.+++++|++.+ +|+|+ +|+|+
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~-np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~-~I~~~-~~~t~--- 76 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFG-NPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFT-SGATE--- 76 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCC-CTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SSHHH---
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccC-CCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC-cEEEE-CCHHH---
Confidence 5899999999999999999999876443222 33334554 557789999999999999999875 79987 56888
Q ss_pred HHHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccc
Q psy8733 130 AVAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 130 a~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
++|.+..++ .+++||+|++... .|.+. + .+...+++.|......+..
T Consensus 77 --~l~~~~~~~~~~~~~~gd~Vv~~~~----~~~s~---~-----------------~~~~~~~~~G~~v~~v~~~---- 126 (391)
T d1p3wa_ 77 --SDNLAIKGAANFYQKKGKHIITSKT----EHKAV---L-----------------DTCRQLEREGFEVTYLAPQ---- 126 (391)
T ss_dssp --HHHHHHHHHHHHHGGGCCEEEEETT----SCHHH---H-----------------HHHHHHHHTTCEEEEECCC----
T ss_pred --HHHHHHhhhhhhhcCCCCEEEEecc----ccchH---H-----------------HHHHHHHHcCCEEEEeCCC----
Confidence 677766554 3677777777764 33221 1 1233456667644333210
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEecccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNET 284 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnET 284 (621)
..+.+ +.+.+ .++++|++|.++|.++
T Consensus 127 ---------------------------------------------------~~~~~-d~~~~~~~i~~~T~lv~is~~~n 154 (391)
T d1p3wa_ 127 ---------------------------------------------------RNGII-DLKELEAAMRDDTILVSIMHVNN 154 (391)
T ss_dssp ---------------------------------------------------TTSCC-CHHHHHHHCCTTEEEEECCSBCT
T ss_pred ---------------------------------------------------CCCeE-cHHHHHHhCCCCcEEEEEECCCC
Confidence 00011 11111 4789999999999999
Q ss_pred cccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceee
Q psy8733 285 VDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFH 357 (621)
Q Consensus 285 ~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld 357 (621)
.||.+.|+ +++++|+++++|++|++|..|+|++.++ ++++++|||+||+|+|+++++++.+....+. +..
T Consensus 155 ~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~---~~g 231 (391)
T d1p3wa_ 155 EIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQ---MHG 231 (391)
T ss_dssp TTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCS---SCS
T ss_pred CCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhccccccccccccccCCCceEEEEEecchhcccCCc---ccC
Confidence 99999996 3467899999999999999999999886 9999999999999999999999987654432 211
Q ss_pred ccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccCccCCCCCCCC
Q psy8733 358 FKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAGCRSRM 429 (621)
Q Consensus 358 ~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~~~~~~~RS~~ 429 (621)
+ ..+.....+|+++....++..++++..+. .....++.+++...++++|..+++..+.. ....|++.
T Consensus 232 g--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~ 298 (391)
T d1p3wa_ 232 G--GHERGMRSGTLPVHQIVGMGEAYRIAKEE--MATEMERLRGLRNRLWNGIKDIEEVYLNG-DLEHGAPN 298 (391)
T ss_dssp S--CTTTTTSCSCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTTTSTTEEECS-CTTTSCTT
T ss_pred C--ccccCcccCcchhhhhhhhhhhhhHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCeeecc-cccccCce
Confidence 1 12334556899999999999999988875 45666788889999999998887655443 23344443
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=1.6e-24 Score=226.65 Aligned_cols=267 Identities=13% Similarity=0.041 Sum_probs=193.6
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhH
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAA 130 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a 130 (621)
|+||+++|.+++|+.|++++.+++.+..++..+ .+..+.+..++++++|+.+++++|++++ +|+|+ +|+|+
T Consensus 2 ~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~---~~~~~~~~~~~~~~aR~~ia~l~~~~~~-~i~~~-~~~T~---- 72 (376)
T d1eg5a_ 2 RVYFDNNATTRVDDRVLEEMIVFYREKYGNPNS---AHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFT-SCATE---- 72 (376)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC---SSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEE-SCHHH----
T ss_pred EEEEECcccccCCHHHHHHHHHHHHHcCCCCcc---ccHHHHHHHHHHHHHHHHHHHHcCCCCC-cEEEE-CCHHH----
Confidence 799999999999999999999999875443333 3445678889999999999999999765 79987 67888
Q ss_pred HHHHHhhhcc---CCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccc
Q psy8733 131 VAMNLISSSM---NVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVS 207 (621)
Q Consensus 131 ~alNlla~~~---~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~ 207 (621)
++|++..++ .+++|++|+.... .+ .....+.+.+++.|...+..+..
T Consensus 73 -~l~~~~~~~~~~~~~~g~~v~~~~~----~~--------------------~~~~~~~~~~~~~g~~v~~vp~~----- 122 (376)
T d1eg5a_ 73 -SINWILKTVAETFEKRKRTIITTPI----EH--------------------KAVLETMKYLSMKGFKVKYVPVD----- 122 (376)
T ss_dssp -HHHHHHHHHHHHTTTTCCEEEECTT----SC--------------------HHHHHHHHHHHHTTCEEEECCBC-----
T ss_pred -HHHhhhhcccccccccCcccccccc----cc--------------------hhhHHHHHHHHhcCCEEEEEcCC-----
Confidence 677766432 4566666666542 11 11123455667777644332210
Q ss_pred cCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccc
Q psy8733 208 IPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDG 287 (621)
Q Consensus 208 ~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tG 287 (621)
+...++.|++ .-.++++|++|+++|..+.||
T Consensus 123 ---------------------------~~~~id~~~l----------------------~~~i~~~t~lv~is~v~~~tG 153 (376)
T d1eg5a_ 123 ---------------------------SRGVVKLEEL----------------------EKLVDEDTFLVSIMAANNEVG 153 (376)
T ss_dssp ---------------------------TTSCBCHHHH----------------------HHHCCTTEEEEEEESBCTTTC
T ss_pred ---------------------------CCCeECHHHH----------------------HHhcCCCceEEEEECCccccc
Confidence 0000111111 013788999999999999999
Q ss_pred ccccc-----cc--ccCCCcEEEecccccCCCcccccccc--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeec
Q psy8733 288 VEFNY-----IP--DSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHF 358 (621)
Q Consensus 288 v~~p~-----i~--~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~ 358 (621)
+++|+ ++ ...+++++||++|++|..|+|+++++ ++++|+|||+||+|.|+++++++.. + .|.+..+
T Consensus 154 ~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~~--~---~p~~~g~ 228 (376)
T d1eg5a_ 154 TIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVP--I---RPLIHGG 228 (376)
T ss_dssp BBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTSC--C---CCSBCSS
T ss_pred eeeeehhhhhhhhhcccCceeEEEeeeccccccccccccCccceecccceeecCCCceeEEeccCcc--c---CCcccCC
Confidence 99986 22 35699999999999999999999875 9999999999999999999998742 2 2322222
Q ss_pred cccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 359 KINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 359 ~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
.. ......++++......+..+.+.... +......+...+..++.++|....
T Consensus 229 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~ 280 (376)
T d1eg5a_ 229 GQ--ERGLRSGTQNVPGIVGAARAMEIAVE--ELSEAAKHMEKLRSKLVSGLMNLG 280 (376)
T ss_dssp CT--TTTTBCSCCCHHHHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CC--cccccCCcccchhhhhHHHHhhcccc--chhhhhhhhhhhhhhhcccccccc
Confidence 21 12344578888888888888887754 577778888888889999988765
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.93 E-value=1.4e-25 Score=236.06 Aligned_cols=291 Identities=11% Similarity=0.119 Sum_probs=196.4
Q ss_pred hhhccCCCCCceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEc
Q psy8733 42 TTAMSSAAHPVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQ 121 (621)
Q Consensus 42 ~~~m~~~~~~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~ 121 (621)
+..||...+.+||++++.+++|.+|++++.+++.++.+.+.+ .++-+..+.++++++|+++++++|++.+ +|+|+
T Consensus 19 R~~F~~~~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~---~~~~~~~~~~~~e~~R~~iA~llga~~~-ei~~~- 93 (404)
T d1qz9a_ 19 RQQFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLI---RSWNSAGWRDLSERLGNRLATLIGARDG-EVVVT- 93 (404)
T ss_dssp GGGBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGG---GHHHHTSGGGHHHHHHHHHHTTTTCCTT-SEEEC-
T ss_pred HhcCCCCCCCEEcCCcccccCCHHHHHHHHHHHHHHhcccCc---ccccchhHHHHHHHHHHHHHHHhCCCCC-cEEEe-
Confidence 444565557899999999999999999999998765443311 1111223567899999999999999876 68887
Q ss_pred CCcchhhhHHHHHHhhh-----ccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHH--HHHHHHHHHhCC
Q psy8733 122 GGGTGMFAAVAMNLISS-----SMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWS--KKAAAEAEKYGK 194 (621)
Q Consensus 122 gggT~~~~a~alNlla~-----~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~--~~~~~~a~~~G~ 194 (621)
+++|+ ++|++.. ...++++++|+++.. ..+. ..|.+...+.+.
T Consensus 94 ~~~T~-----~~~~~~~~~~~~~~~~~~~~~vi~~~~-------------------------~~~~~~~~~~~~~~~~~~ 143 (404)
T d1qz9a_ 94 DTTSI-----NLFKVLSAALRVQATRSPERRVIVTET-------------------------SNFPTDLYIAEGLADMLQ 143 (404)
T ss_dssp SCHHH-----HHHHHHHHHHHHHHHHSTTCCEEEEET-------------------------TSCHHHHHHHHHHHHHHC
T ss_pred cCchH-----HHHHHhhhhhhhhcccCCCcEEEEecc-------------------------ccchHHHHHHhhhheeee
Confidence 56888 4554322 224556666665543 2121 122222222221
Q ss_pred ceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccc--cCCCC
Q psy8733 195 VNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQST--WNRDP 272 (621)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~--l~i~~ 272 (621)
..+..+. .+ +.+. -.+++
T Consensus 144 ~~~~~~~-----------------------------------------------------------~~-~~~~~~~~i~~ 163 (404)
T d1qz9a_ 144 QGYTLRL-----------------------------------------------------------VD-SPEELPQAIDQ 163 (404)
T ss_dssp SSCEEEE-----------------------------------------------------------ES-SGGGHHHHCST
T ss_pred eceeccc-----------------------------------------------------------cc-cchhHHHhcCC
Confidence 1000000 00 0111 14789
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccccc-CCCc-cEEEEEchh
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNI-GPAG-ITVVIVRED 343 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~l-GP~G-lg~livr~~ 343 (621)
+|++|+++|+.+.||+++|+ +++++|++++||++|++|..|+|+++++ ++++++|||+ +|+| .|+++++++
T Consensus 164 ~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~ 243 (404)
T d1qz9a_ 164 DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQ 243 (404)
T ss_dssp TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTT
T ss_pred CceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEEechhhcccCCceEEEEEechh
Confidence 99999999999999999997 3467899999999999999999999886 9999999998 5665 899999999
Q ss_pred HHhhhCCCCCceeec-------ccc--c--cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH--
Q psy8733 344 LLEYALPITPTVFHF-------KIN--A--DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI-- 410 (621)
Q Consensus 344 ll~~~~~~~P~~ld~-------~~~--~--~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L-- 410 (621)
+++.+.+....+... ... . ......+|++...++.+..+++++.+. |++.++++...+...+.+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~ 322 (404)
T d1qz9a_ 244 LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQT-DMASLRRKSLALTDLFIELVEQ 322 (404)
T ss_dssp TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHh-hHHHHHHHHHHhHHHHHHHHHh
Confidence 887665422111000 000 0 112345799999999999999999999 89999998888887755544
Q ss_pred -HccCCcccC-ccCCCCCCC
Q psy8733 411 -DNSDKFYEC-PVQAGCRSR 428 (621)
Q Consensus 411 -~~~~g~~~~-~~~~~~RS~ 428 (621)
...+|+.+. |.+++.|++
T Consensus 323 ~~~~~~~~i~~p~~~~~r~~ 342 (404)
T d1qz9a_ 323 RCAAHELTLVTPREHAKRGS 342 (404)
T ss_dssp HHTTSCCEECSCSSGGGBCS
T ss_pred hccCCCEEEECCCCccceee
Confidence 344555543 334445554
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.73 E-value=7e-17 Score=165.90 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=100.5
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEeccccccC-CCccEEEEEch
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQKNIG-PAGITVVIVRE 342 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK~lG-P~Glg~livr~ 342 (621)
..++++|.++|..|.+|...|+ +++++|+++++|+++++|+.|+|+.+++ ++++|.||++| |.|+|+++.++
T Consensus 138 ~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~ 217 (364)
T d2e7ja1 138 RGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKE 217 (364)
T ss_dssp TSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECT
T ss_pred cCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECH
Confidence 3467899999999999999996 5678999999999999999999999886 89999999998 55799999999
Q ss_pred hHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 343 DLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 343 ~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.++.+......+. .. .......|.+...++++.++++++.+. ++...+ ..++++++.+.+.+++
T Consensus 218 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~-~~~~~~~~~~~l~~~g 282 (364)
T d2e7ja1 218 EWAEIVLRRSEKYK---NK-EVELLGCTARGATIITLMASFPHVRER--IKRWDE-EVEKARRFAAEMEKLG 282 (364)
T ss_dssp TTTTTTTCBCSSCT---TS-BGGGTTCCCCSHHHHHHHHHHHHHHHH--GGGHHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhccccC---cc-cccccccccchhHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHcC
Confidence 98765533222111 00 001112355566777888888888764 444333 3456778888888875
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=8.2e-13 Score=142.15 Aligned_cols=148 Identities=18% Similarity=0.062 Sum_probs=111.3
Q ss_pred CCCCCceEEEEecccccccccccc-----c------cccCCCcEEEecccccCCCcccccc---------cceEEecccc
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY-----I------PDSQGIPLVSDMSSNFLSRKFDVSK---------FGVIIAGAQK 328 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~-----i------~~~~g~llvvDavSs~G~~pIDv~~---------~gvl~asaqK 328 (621)
.+++++.+|..++..|.+|...|+ + ++.+|++++|||+++.+..|++... .|.+.+++||
T Consensus 195 ~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK 274 (450)
T d1pmma_ 195 ACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 274 (450)
T ss_dssp HCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTT
T ss_pred HhhhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhh
Confidence 367889999999999999999985 2 2368999999999998887776543 3489999999
Q ss_pred ccC-CCccEEEEEchhHH-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8733 329 NIG-PAGITVVIVREDLL-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 329 ~lG-P~Glg~livr~~ll-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L 406 (621)
|++ |.|+|++++|++.. .......+.|+... .......++-+...+.++..++.++-.+ |++++.++..+++++|
T Consensus 275 ~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~--~~~~~~~~sr~~~~~~~~~~~l~~~G~~-G~~~~~~~~~~la~~l 351 (450)
T d1pmma_ 275 FGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ--IGTFAINFSRPAGQVIAQYYEFLRLGRE-GYTKVQNASYQVAAYL 351 (450)
T ss_dssp TTCCCSSCEEEEESSGGGSCGGGCEEEEETTEE--EEECCSCCSCBSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred ccCCCCCeeEEEecChhhhhhhcccccCcCCCC--cCCCcccCccchHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHH
Confidence 996 99999999997653 11111122332111 1112233444556677777888888888 8999999999999999
Q ss_pred HHHHHccCCcccC
Q psy8733 407 YQEIDNSDKFYEC 419 (621)
Q Consensus 407 ~e~L~~~~g~~~~ 419 (621)
.+.|.+.+++.+.
T Consensus 352 ~~~L~~~~~~el~ 364 (450)
T d1pmma_ 352 ADEIAKLGPYEFI 364 (450)
T ss_dssp HHHHHTTSCEEEE
T ss_pred HHHHHhCCCeEEE
Confidence 9999999887664
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.33 E-value=7.5e-12 Score=133.58 Aligned_cols=144 Identities=8% Similarity=-0.040 Sum_probs=102.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc---------------ccceEEeccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS---------------KFGVIIAGAQKN 329 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~---------------~~gvl~asaqK~ 329 (621)
..+++..+.++++.|-.|+..|+ +++++|+++++|++++.+....+.. ..|+++.|.||.
T Consensus 170 ~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~ 249 (462)
T d1c4ka2 170 KWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQ 249 (462)
T ss_dssp TCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHH
T ss_pred hccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcc
Confidence 45677888888998999999996 4678999999999999988776642 125899999999
Q ss_pred cCCC-ccEEEEEchhHHhhhCCCCCceeeccccccC--CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Q psy8733 330 IGPA-GITVVIVREDLLEYALPITPTVFHFKINADN--NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLL 406 (621)
Q Consensus 330 lGP~-Glg~livr~~ll~~~~~~~P~~ld~~~~~~~--~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L 406 (621)
+|++ |.+++.++++.+... ..+.+....... ...-.+|+...+.++..+..++... +.+++.++..+++.++
T Consensus 250 lg~~~~g~ll~~~~~~~~~~----~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~-~g~~l~~~~~~~a~~~ 324 (462)
T d1c4ka2 250 QAGFSQTSQIHKKDSHIKGQ----LRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGE-AGRKLWHDLLITTIEA 324 (462)
T ss_dssp SSCCTTCEEEEEECGGGTTS----TTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHH-HHHHHHHHHHHHHHHH
T ss_pred cccccceEEEEecccccccc----chhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 9854 555555555544321 112221111110 1112578888999999999999776 5677788888999999
Q ss_pred HHHHHccCCccc
Q psy8733 407 YQEIDNSDKFYE 418 (621)
Q Consensus 407 ~e~L~~~~g~~~ 418 (621)
++.+.++++++.
T Consensus 325 r~~l~~~~~~~~ 336 (462)
T d1c4ka2 325 RKKLIKAGSMFR 336 (462)
T ss_dssp HHHHHHTTCSSE
T ss_pred HHHHHHhhhhhh
Confidence 999999876543
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.26 E-value=1.3e-10 Score=119.61 Aligned_cols=242 Identities=13% Similarity=0.095 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccC
Q psy8733 62 LPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMN 141 (621)
Q Consensus 62 ~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~ 141 (621)
++++=++++.+.+..-. ... + ..+++.++.+++++|.+. ++++ +|||. |++++..+++
T Consensus 10 ~~~~~~~~~~~~~~~~~--------~~~-G----~~v~~~E~~la~~~g~~~---ai~~-~sgt~-----Al~~al~al~ 67 (376)
T d1mdoa_ 10 MGAEELAAVKTVLDSGW--------ITT-G----PKNQELEAAFCRLTGNQY---AVAV-SSATA-----GMHIALMALG 67 (376)
T ss_dssp CCHHHHHHHHHHHHHTC--------CSS-S----HHHHHHHHHHHHHHCCSE---EEEE-SCHHH-----HHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCC--------CcC-C----HHHHHHHHHHHHHHCcCe---EEEe-CCHHH-----HHHHHHHHhC
Confidence 45666777777664210 111 2 346678899999999853 6666 57898 6777777889
Q ss_pred CCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCcc
Q psy8733 142 VPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEAS 221 (621)
Q Consensus 142 ~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (621)
+++||+|+++.- .|.+.+.. ....|...+..+.. +
T Consensus 68 ~~~gdeVi~~~~----~~~~~~~a-----------------------i~~~g~~pv~~d~~----------~-------- 102 (376)
T d1mdoa_ 68 IGEGDEVITPSM----TWVSTLNM-----------------------IVLLGANPVMVDVD----------R-------- 102 (376)
T ss_dssp CCTTCEEEEESS----SCHHHHHH-----------------------HHHTTCEEEEECBC----------T--------
T ss_pred CCCCCEEEEecc----cccccccc-----------------------hhccccceeeeccc----------c--------
Confidence 999999999864 22222111 22344433332211 0
Q ss_pred ccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCcccc--CCCCCceEEEEecccccccccccc-----cc
Q psy8733 222 YLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTW--NRDPEASYLYYCDNETVDGVEFNY-----IP 294 (621)
Q Consensus 222 ~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l--~i~~~t~~V~~thnET~tGv~~p~-----i~ 294 (621)
+ .| ..+.+.+ +++++|++|.++| ..|...|+ ++
T Consensus 103 -------~----~~--------------------------~~d~~~l~~~i~~~tkaIi~~h---~~G~~~~~~~i~~i~ 142 (376)
T d1mdoa_ 103 -------D----TL--------------------------MVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALG 142 (376)
T ss_dssp -------T----TC--------------------------CBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHH
T ss_pred -------c----cc--------------------------CCCHHHHHHhcCCCCeEEEEeC---CCCCccchhHHHHHH
Confidence 0 00 0112222 4778999999987 57887775 46
Q ss_pred ccCCCcEEEecccccCCCc--ccccccc--eEEeccccccCCCccEEEEEchhH-HhhhCCCC--C----cee---eccc
Q psy8733 295 DSQGIPLVSDMSSNFLSRK--FDVSKFG--VIIAGAQKNIGPAGITVVIVREDL-LEYALPIT--P----TVF---HFKI 360 (621)
Q Consensus 295 ~~~g~llvvDavSs~G~~p--IDv~~~g--vl~asaqK~lGP~Glg~livr~~l-l~~~~~~~--P----~~l---d~~~ 360 (621)
+++|+++|.|++|++|+.. ..+..+| ++.+++.|+++..+=|+++.+++. .+++.... . ... .+..
T Consensus 143 ~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 222 (376)
T d1mdoa_ 143 ERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRA 222 (376)
T ss_dssp HHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC----------
T ss_pred HhcCceEEeccchhccCeeCCeecccccCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCccccccccccccc
Confidence 7899999999999999863 3334455 667888999973333666666554 34332210 0 000 0000
Q ss_pred ----cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 361 ----NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 361 ----~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
....+.-+...+..+..+ +..+. .++.+.++.++.++++++.|.++++..
T Consensus 223 ~~~~~~~~g~n~~~~~~~Aai~----~~qL~---~~~~~~~~r~~~~~~~~~~L~~~~~~~ 276 (376)
T d1mdoa_ 223 PQAEVLAPGYKYNLPDLNAAIA----LAQLQ---KLDALNARRAAIAAQYHQAMADLPFQP 276 (376)
T ss_dssp -CCEESSCCCBCCCCHHHHHHH----HHHHH---THHHHHHHHHHHHHHHHHHHHTSSCEE
T ss_pred ccccchhcccccccchhhhhhh----hhhhh---hhhHHHHHHhhhhhhhhhhcccccccc
Confidence 000111111222222211 22222 467788888999999999999887443
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.14 E-value=3.8e-10 Score=111.34 Aligned_cols=113 Identities=13% Similarity=0.007 Sum_probs=62.2
Q ss_pred ccccCCCcEEEecccccCCCccccccc-------c--eEEeccccccCCCccEEEEEchhHHhhhCCCCCceeecccccc
Q psy8733 293 IPDSQGIPLVSDMSSNFLSRKFDVSKF-------G--VIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINAD 363 (621)
Q Consensus 293 i~~~~g~llvvDavSs~G~~pIDv~~~-------g--vl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~ 363 (621)
+++++|+++++|.+++.+..+.+...+ + .++.+.+|+.+..+.+++.......... . ..
T Consensus 163 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~ 230 (345)
T d1v72a1 163 VCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEM----------S--YR 230 (345)
T ss_dssp HHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHH----------H--HH
T ss_pred HHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccchhhhhhhc----------c--cc
Confidence 356899999999999876555544332 1 5566666666544333333333322110 0 00
Q ss_pred CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 364 NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 364 ~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
.....++++. ...+...+..++.+. +......+...+..++.+.+.+++|+.+.
T Consensus 231 ~~~~~~~~~~-~~~aa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 284 (345)
T d1v72a1 231 RKRAGHLSSK-MRFLSAQIDAYLTDD-LWLRNARKANAAAQRLAQGLEGLGGVEVL 284 (345)
T ss_dssp HHHTTCCCSS-THHHHHHHHHHTSTT-HHHHHHHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred ccccccccch-hhHHhhhhHHHHHHh-hhhhhccchhhHHHHHHHHHHhcCCcEec
Confidence 0011122221 222333344445444 56777777888888999999998876543
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.05 E-value=8e-09 Score=107.51 Aligned_cols=134 Identities=11% Similarity=0.147 Sum_probs=87.8
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----ccccc-----ccc--eEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----KFDVS-----KFG--VIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----pIDv~-----~~g--vl~asaqK~l 330 (621)
++++++++.+|+-.|+||...+. +++++++++|+|-+-+.... +..+. ..+ +++.|.-|.+
T Consensus 160 ~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~ 239 (388)
T d1j32a_ 160 ITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY 239 (388)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT
T ss_pred CCCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh
Confidence 56789999999999999999884 34578999999987532221 11111 112 7788889999
Q ss_pred CCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 331 GPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 331 GP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
|.+| +|+++.++++++.+.. .. .....+++....+++..+++...+ -++.+.++.+++.+.+++
T Consensus 240 ~~~GlRvG~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~q~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 305 (388)
T d1j32a_ 240 AMTGWRVGFLAGPVPLVKAATK-------IQ-----GHSTSNVCTFAQYGAIAAYENSQD--CVQEMLAAFAERRRYMLD 305 (388)
T ss_dssp TCTTTCCEEEECCHHHHHHHHH-------HH-----HTTTCSCCHHHHHHHHHHHHSCSH--HHHHHHHHHHHHHHHHHH
T ss_pred hcchhHeEEEEECHHHHHHHHH-------hh-----hhccccccHHHHHHHhhcccchHH--HHHHHHHHHHHHHHHHHH
Confidence 9888 7999999988765421 00 011223344444444444332212 266777778888888999
Q ss_pred HHHccCCcc
Q psy8733 409 EIDNSDKFY 417 (621)
Q Consensus 409 ~L~~~~g~~ 417 (621)
.|++.+|+.
T Consensus 306 ~l~~~~g~~ 314 (388)
T d1j32a_ 306 ALNAMPGLE 314 (388)
T ss_dssp HHHTCTTCB
T ss_pred HHHhCCCCE
Confidence 998876554
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.01 E-value=6e-08 Score=99.90 Aligned_cols=131 Identities=12% Similarity=0.184 Sum_probs=82.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCc---cccccc-c--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRK---FDVSKF-G--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~p---IDv~~~-g--vl~asaqK~lG 331 (621)
++++++++.+|+-.|+||...+. +++++++++|+|-+-+-. ... ..+... + +++.|--|.+|
T Consensus 156 ~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 235 (388)
T d1gdea_ 156 VTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA 235 (388)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT
T ss_pred CccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhcc
Confidence 56789999999989999999873 346899999999874422 111 122222 3 77889999999
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH--HHhhCCHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW--IKRQGGLAKMEQNSLQKSVLLY 407 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~--i~~~gGl~~i~~r~~~la~~L~ 407 (621)
.+| +|.++..+++.+++.. .. .....+++.....++..+++. ..+. ++...++..+....+.
T Consensus 236 ~~GlR~G~ii~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~ 301 (388)
T d1gdea_ 236 MTGWRLGFVAAPSWIIERMVK-------FQ-----MYNATCPVTFIQYAAAKALKDERSWKA--VEEMRKEYDRRRKLVW 301 (388)
T ss_dssp CGGGCCEEEECCHHHHHHHHH-------HH-----HTTTCSCCHHHHHHHHHHHTCHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CccccEEEEEeeccchhhhhh-------cc-----ccccccccccchhhHHHHHhhccchhH--HHHHHHHHHHhhhhhh
Confidence 777 8999999888765421 00 112233344444444444421 1111 4555566666667777
Q ss_pred HHHHccC
Q psy8733 408 QEIDNSD 414 (621)
Q Consensus 408 e~L~~~~ 414 (621)
+.|...+
T Consensus 302 ~~l~~~~ 308 (388)
T d1gdea_ 302 KRLNEMG 308 (388)
T ss_dssp HHHHHTT
T ss_pred hhhhhcc
Confidence 7777653
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.98 E-value=6.9e-08 Score=103.86 Aligned_cols=145 Identities=14% Similarity=-0.005 Sum_probs=99.0
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccc--------cccceEEeccccccC-CCccEEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDV--------SKFGVIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv--------~~~gvl~asaqK~lG-P~Glg~l 338 (621)
.+-+|..+...|.+|..-|+ +++++++.++|||+.+....+.+- +..|.+...+|||++ |.|.|++
T Consensus 235 ~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~ 314 (476)
T d1js3a_ 235 IPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAM 314 (476)
T ss_dssp EEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEE
T ss_pred CcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceee
Confidence 35678899999999999996 567899999999987555444432 234699999999997 9999999
Q ss_pred EEchhH-HhhhCCCCCceeeccccc-------cCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 339 IVREDL-LEYALPITPTVFHFKINA-------DNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 339 ivr~~l-l~~~~~~~P~~ld~~~~~-------~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
++|+.. +.......+.|+...... ...+..++-+ +....+-.+++.+-.. |+.++.++..++++++++.|
T Consensus 315 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~-~~al~lw~~l~~~G~~-g~~~~i~~~~~lA~~l~~~l 392 (476)
T d1js3a_ 315 WVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRR-FRSLKMWFVFRMYGVK-GLQAYIRKHVQLSHEFEAFV 392 (476)
T ss_dssp EESCHHHHHGGGC------------CCSCCCGGGSSSCSCCC-CTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHhcChhhhccccccccccccccccccccchh-hHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHHHHH
Confidence 999754 222222223332211100 0011122333 2334566778888777 89999999999999999999
Q ss_pred HccCCcccC
Q psy8733 411 DNSDKFYEC 419 (621)
Q Consensus 411 ~~~~g~~~~ 419 (621)
++.++|++.
T Consensus 393 ~~~~~fel~ 401 (476)
T d1js3a_ 393 LQDPRFEVC 401 (476)
T ss_dssp HHCTTEEEC
T ss_pred hcCCCeEEE
Confidence 999888765
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=1.9e-08 Score=105.72 Aligned_cols=127 Identities=14% Similarity=0.102 Sum_probs=90.8
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc--------cccccceEEeccccccC-CCccE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF--------DVSKFGVIIAGAQKNIG-PAGIT 336 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI--------Dv~~~gvl~asaqK~lG-P~Glg 336 (621)
++++.+|.+++..|.+|...|+ +++++|+++++|++.+.+.... ++...|++++++||+++ |.|.|
T Consensus 192 ~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~ 271 (445)
T d3bc8a1 192 PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGA 271 (445)
T ss_dssp GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCE
T ss_pred ccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcceEEecCccccccCCCCc
Confidence 3468899999999999999886 4578999999999998776432 22345699999999995 99999
Q ss_pred EEEEchhHH-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 337 VVIVREDLL-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 337 ~livr~~ll-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+++.++... +++.. .+ ......+| .+.+..++.++... |...+.++..++++++++.|.++
T Consensus 272 ~l~~~~~~~~~~~~~---~~--------~~~~~~~~----~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~L~~l 333 (445)
T d3bc8a1 272 IIAGFNEPFIQDISK---MY--------PGRASASP----SLDVLITLLSLGCS-GYRKLLKERKEMFVYLSTQLKKL 333 (445)
T ss_dssp EEEESCHHHHHHHHH---HS--------CSCBCSHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeCChHHHHHHHH---HH--------hhcccCcc----hHHHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHHH
Confidence 999986543 32211 00 11122233 33344556667666 78888888888999999888765
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=2.8e-08 Score=103.83 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=93.3
Q ss_pred CCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccccc----ccc----eEEeccccccCCCccEE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS----KFG----VIIAGAQKNIGPAGITV 337 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~----~~g----vl~asaqK~lGP~Glg~ 337 (621)
.++..+|.+....+.+|...|+ ++++++++++||-++++|...-+-. .++ +++.+-=|.+|..| |+
T Consensus 165 ~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~G-g~ 243 (383)
T d1bs0a_ 165 CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AA 243 (383)
T ss_dssp CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EE
T ss_pred CCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccccc-cc
Confidence 3566788888888889999986 5678999999999999998766532 222 66667779988665 45
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+..+.+..+.+....+. ..+. .++...+.++.++++.+++. ..+...++..++..++++.|.+.+
T Consensus 244 v~~~~~~~~~l~~~~~~-----------~~~s~~~~p~~~aa~~~a~~~~~~~-~~~~~~~~l~~~~~~~~~~l~~~g 309 (383)
T d1bs0a_ 244 VLCSSTVADYLLQFARH-----------LIYSTSMPPAQAQALRASLAVIRSD-EGDARREKLAALITRFRAGVQDLP 309 (383)
T ss_dssp EEECHHHHHHHHHHCHH-----------HHSSBCCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred cccchhHHHHHHhhchh-----------hhhcccccchHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666766554321111 1222 33344566777888888776 567888888899999999998876
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=98.96 E-value=5.6e-09 Score=101.10 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=60.3
Q ss_pred ccCCCcEEEecccccCCCccccccc---------ceEEeccccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCC
Q psy8733 295 DSQGIPLVSDMSSNFLSRKFDVSKF---------GVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNN 365 (621)
Q Consensus 295 ~~~g~llvvDavSs~G~~pIDv~~~---------gvl~asaqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~ 365 (621)
+.+|+++++|..+..+..+.+...+ .....+..|..+..+.+............. ....
T Consensus 160 ~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 227 (340)
T d1svva_ 160 KEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNAR------------HLIK 227 (340)
T ss_dssp HHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHH------------HHHH
T ss_pred ccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhh------------hhcc
Confidence 4689999999998766655554332 166667777766555555554433321110 0001
Q ss_pred CccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 366 SVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 366 s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
...++.+...+. ..+++.++ +.++.....++...++.++++.++..+
T Consensus 228 ~~~~~~~~~~~~-~aa~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g 274 (340)
T d1svva_ 228 QRGALMAKGWLL-GIQFEVLM-KDNLFFELGAHSNKMAAILKAGLEACG 274 (340)
T ss_dssp HTTCCCTTTHHH-HHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCccchhhHH-HHHHHHHh-hhhHHHHHHHHHHHHHhhhHHHHhcCC
Confidence 112222222222 22333333 333677788888899999999999875
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=98.90 E-value=5.4e-08 Score=99.31 Aligned_cols=134 Identities=10% Similarity=0.015 Sum_probs=84.7
Q ss_pred CCCCCceEEEEecccccccccccc--------ccccCCCcEEEeccccc-CCC---cccc-cccc--eEEeccccccCCC
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF-LSR---KFDV-SKFG--VIIAGAQKNIGPA 333 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~-G~~---pIDv-~~~g--vl~asaqK~lGP~ 333 (621)
...+++++|+++.-.|.||...+. +++++++++|+|-+-.- ... .... ...+ +++.|--|++|-+
T Consensus 140 ~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~ 219 (355)
T d1lc5a_ 140 ALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIP 219 (355)
T ss_dssp HCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCT
T ss_pred ccccccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccc
Confidence 467889999999999999998873 23578999999877642 211 1122 2223 7888999999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|+++.+++.+..... . .....+.+.....++..+++.-. -+....++.++..+++++.|.
T Consensus 220 GlR~G~~i~~~~~~~~~~~---------~----~~~~~~~~~~~~~~a~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~ 283 (355)
T d1lc5a_ 220 GLRLGYLVNSDDAAMARMR---------R----QQMPWSVNALAALAGEVALQDSA---WQQATWHWLREEGARFYQALC 283 (355)
T ss_dssp TTCCEEEECCCHHHHHHHH---------H----HSCTTCSCHHHHHHHHHGGGCHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeccchhhhHHHH---------h----hcCCccccccccccccccccccc---hhHHHHHHHHHHHHHHHHHHh
Confidence 8 7999988765432210 0 01122334444444444444211 245556666777778889999
Q ss_pred ccCCccc
Q psy8733 412 NSDKFYE 418 (621)
Q Consensus 412 ~~~g~~~ 418 (621)
+++|+..
T Consensus 284 ~~~~~~~ 290 (355)
T d1lc5a_ 284 QLPLLTV 290 (355)
T ss_dssp TSTTEEE
T ss_pred hcCCcEE
Confidence 8876543
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=1.6e-07 Score=95.74 Aligned_cols=131 Identities=10% Similarity=0.161 Sum_probs=79.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC----CCccccccc---c-eEEeccccccCCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL----SRKFDVSKF---G-VIIAGAQKNIGPA 333 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G----~~pIDv~~~---g-vl~asaqK~lGP~ 333 (621)
.+++++++.+++..|+||...+. +++++++++|+|.+.+-. ..+..+... + +++.+.=|.+|.+
T Consensus 130 ~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~ 209 (361)
T d1d2fa_ 130 AKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIP 209 (361)
T ss_dssp TSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCG
T ss_pred ccCCceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccc
Confidence 45789999999999999998873 345799999999876532 122222222 2 6777777888755
Q ss_pred c--cEEEEEchhHH-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLL-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 334 G--lg~livr~~ll-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
| +|++++..... +... ..........+|+...+.+...+++...+. .+.+.+..+++.+.+.+.+
T Consensus 210 g~R~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~ 277 (361)
T d1d2fa_ 210 ALTGAYGIIENSSSRDAYL----------SALKGRDGLSSPSVLALTAHIAAYQQGAPW--LDALRIYLKDNLTYIADKM 277 (361)
T ss_dssp GGCCEEEEECSHHHHHHHH----------HHHHTTSCCCSCCHHHHHHHHHHHHHCHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeecchhHHHHHHh----------hhcccccccccchhhhHHHHHHHhhccchh--hhcccccchhhHHHHHHHh
Confidence 4 66666664332 2110 001122334567666666655555544332 4555566666666666666
Q ss_pred Hc
Q psy8733 411 DN 412 (621)
Q Consensus 411 ~~ 412 (621)
.+
T Consensus 278 ~~ 279 (361)
T d1d2fa_ 278 NA 279 (361)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.86 E-value=3.6e-08 Score=102.81 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=77.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEeccccc-----------CCCcccccccc--eEEecccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF-----------LSRKFDVSKFG--VIIAGAQK 328 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~-----------G~~pIDv~~~g--vl~asaqK 328 (621)
..++++++.++...|.||...+. +++++++++|+|-+=+- ....-+.+... +++.|.=|
T Consensus 171 ~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK 250 (412)
T d1bw0a_ 171 KDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAK 250 (412)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTT
T ss_pred hhccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCc
Confidence 56788999999999999998873 23467999999976331 11122223322 56667789
Q ss_pred ccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHH
Q psy8733 329 NIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQG--GLAKMEQNSLQKSV 404 (621)
Q Consensus 329 ~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~g--Gl~~i~~r~~~la~ 404 (621)
.+|-+| +|.+++.++..... ......... .....++++... .. +..++.... -++.+.++.+++.+
T Consensus 251 ~~~~~G~RvG~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~r~ 320 (412)
T d1bw0a_ 251 NLVVPGWRLGWLLYVDPHGNGP-----SFLEGLKRV-GMLVCGPCTVVQ-AA---LGEALLNTPQEHLDQIVAKIEESAM 320 (412)
T ss_dssp TTSCGGGCCEEEEEECTTCSCH-----HHHHHHHHH-HHHHTCSCHHHH-HH---HHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred cCccCCCCcccccccchhhcch-----hhhhhhccc-cccccCCchhhh-hh---cccccccccccccccccchhHHHHH
Confidence 998777 78888765542210 000000000 001112222222 22 222232210 15666777777888
Q ss_pred HHHHHHHccCCcc
Q psy8733 405 LLYQEIDNSDKFY 417 (621)
Q Consensus 405 ~L~e~L~~~~g~~ 417 (621)
.+.+.|.+..|+.
T Consensus 321 ~~~~~l~~~~g~~ 333 (412)
T d1bw0a_ 321 YLYNHIGECIGLA 333 (412)
T ss_dssp HHHHHHTTSTTEE
T ss_pred HHHHHHHHhcCce
Confidence 8888887765553
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=1.4e-07 Score=99.11 Aligned_cols=127 Identities=12% Similarity=0.149 Sum_probs=85.3
Q ss_pred ceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc----------ccccceEEeccccccCCCccEEE
Q psy8733 274 ASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD----------VSKFGVIIAGAQKNIGPAGITVV 338 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID----------v~~~gvl~asaqK~lGP~Glg~l 338 (621)
..+|.+-.+-...|...|+ +++++|+++++|-++++|..--+ ..+.++++++-.|.+|-.+-|++
T Consensus 178 ~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v 257 (401)
T d1fc4a_ 178 HVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYT 257 (401)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEE
T ss_pred ceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccc
Confidence 3455544444445766664 56789999999999999865321 23455899999999963335788
Q ss_pred EEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 339 IVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 339 ivr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
.-++++.+.+....+.+ .+. .++.....+...+++.+.+. +.+.++.++...++++.+...+
T Consensus 258 ~g~~~~~~~l~~~~~~~-----------~~s~~l~p~~~~aa~~~l~~~~~~---~~~~~~l~~~~~~~~~~l~~~g 320 (401)
T d1fc4a_ 258 AARKEVVEWLRQRSRPY-----------LFSNSLAPAIVAASIKVLEMVEAG---SELRDRLWANARQFREQMSAAG 320 (401)
T ss_dssp EECHHHHHHHHHHCHHH-----------HHSCCCCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCChhh-----------hhcCCCCHHHHHHHHhhhcccccC---HHHHHHHHHHHHHHHhhhcccC
Confidence 88888877553222211 222 33445566666777766553 6778888999999999998875
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=2.6e-07 Score=95.25 Aligned_cols=132 Identities=13% Similarity=0.138 Sum_probs=80.9
Q ss_pred CCCCCceEEEEecccccccccccc--------ccccCCCcEEEeccccc---CCCcccc-ccc-c--eEEeccccccCCC
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNF---LSRKFDV-SKF-G--VIIAGAQKNIGPA 333 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~---G~~pIDv-~~~-g--vl~asaqK~lGP~ 333 (621)
.++++++++.+|.-.|.||...+. +++++++++|.|-+-+- ...+... ... + +++.|.=|.+|-+
T Consensus 160 ~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 239 (382)
T d1b5pa_ 160 AITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMT 239 (382)
T ss_dssp TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCG
T ss_pred hCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCc
Confidence 356789999999999999999883 34688999999976552 2222211 111 2 7778888999988
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH---HHHhhCCHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA---WIKRQGGLAKMEQNSLQKSVLLYQ 408 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~---~i~~~gGl~~i~~r~~~la~~L~e 408 (621)
| +|+++.++++++.+.. .. . ....+++.....++..++. +.... ++...+..+++.+.+++
T Consensus 240 GlR~G~~~~~~~~i~~~~~-------~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 305 (382)
T d1b5pa_ 240 GWRIGYACGPKEVIKAMAS-------VS----R-QSTTSPDTIAQWATLEALTNQEASRAF--VEMAREAYRRRRDLLLE 305 (382)
T ss_dssp GGCCEEEECCHHHHHHHHH-------HH----H-TTTCSCCHHHHHHHHHHHHCHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HhheEEEEECHHHHHHHHH-------HH----H-hcccCcccccccccccccccccchhHH--HHHHHHHHHhhhhHHHH
Confidence 8 8999999988765421 11 0 1122333333233222222 22222 45555666666777777
Q ss_pred HHHccC
Q psy8733 409 EIDNSD 414 (621)
Q Consensus 409 ~L~~~~ 414 (621)
.+...+
T Consensus 306 ~l~~~g 311 (382)
T d1b5pa_ 306 GLTALG 311 (382)
T ss_dssp HHHHHT
T ss_pred HHhhcC
Confidence 777654
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=1.7e-08 Score=103.48 Aligned_cols=255 Identities=15% Similarity=0.144 Sum_probs=151.0
Q ss_pred ceeccCC-C-CCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 52 VINFGAG-P-AKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 52 ~~lf~aG-P-s~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
+.+++-| | -+.|+.+++++.+.+.+....+ ... =..+.|+.+++.++++.+ +|+++ +|+|+
T Consensus 27 ~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~------~~~------G~~elr~aiA~~~~~~~~-~Iiit-~G~~~--- 89 (368)
T d1v2da_ 27 AVNLGQGFPSNPPPPFLLEAVRRALGRQDQYA------PPA------GLPALREALAEEFAVEPE-SVVVT-SGATE--- 89 (368)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHTTTSCSCC------CTT------CCHHHHHHHHHHHTSCGG-GEEEE-SSHHH---
T ss_pred CEEecCCCCCCCCCHHHHHHHHHHhhcccCCC------CCc------CCHHHHHHHHhhcccCCc-ceeec-cchHH---
Confidence 3455544 2 2578999999999874332211 001 134678889999999765 79887 56888
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
++++ +...+..+|+.+.+..+++... ...++..|...+..+..
T Consensus 90 --al~~--------------------------~~~~l~~~~d~v~~~~p~~~~~--~~~~~~~g~~~~~~~~~------- 132 (368)
T d1v2da_ 90 --ALYV--------------------------LLQSLVGPGDEVVVLEPFFDVY--LPDAFLAGAKARLVRLD------- 132 (368)
T ss_dssp --HHHH--------------------------HHHHHCCTTCEEEEEESCCTTH--HHHHHHTTCEEEEEECE-------
T ss_pred --HHHH--------------------------HhhccccccccccccCCcchhh--hhHHHhcCCccceeccc-------
Confidence 3443 3344556677766666655543 23445556432221100
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
. -...|. ++.+.+ +..+.++++.+.+|+..|.||..
T Consensus 133 --~------------------~~~~~~--~d~~~l----------------------~~~~~~~~~~i~~~~p~NPtG~~ 168 (368)
T d1v2da_ 133 --L------------------TPEGFR--LDLSAL----------------------EKALTPRTRALLLNTPMNPTGLV 168 (368)
T ss_dssp --E------------------ETTEEE--CCHHHH----------------------HTTCCTTEEEEEEESSCTTTCCC
T ss_pred --c------------------cccccc--CCHHHH----------------------HHhhccCceEEEEcCCCCccccc
Confidence 0 000011 111110 11356789999999999999999
Q ss_pred ccc--------ccccCCCcEEEecccccCCCcccccc-------cceEEeccccccCCCc--cEEEEEchhHHhhhCCCC
Q psy8733 290 FNY--------IPDSQGIPLVSDMSSNFLSRKFDVSK-------FGVIIAGAQKNIGPAG--ITVVIVREDLLEYALPIT 352 (621)
Q Consensus 290 ~p~--------i~~~~g~llvvDavSs~G~~pIDv~~-------~gvl~asaqK~lGP~G--lg~livr~~ll~~~~~~~ 352 (621)
.+. +++++++++++|.+.......-+... ..+++.+.-|.+|.+| +|.++.++++.+.+..
T Consensus 169 ~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~-- 246 (368)
T d1v2da_ 169 FGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAG-- 246 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHH--
T ss_pred CCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhhh--
Confidence 873 35689999999998775544433322 1255555557776555 7888888887765421
Q ss_pred CceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcc
Q psy8733 353 PTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 353 P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~ 417 (621)
+. ......++...-+++..+++......-++.+.++.+++.+++++.|++.+ +.
T Consensus 247 -----~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~ 300 (368)
T d1v2da_ 247 -----MR-----QWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG-LR 300 (368)
T ss_dssp -----HH-----HHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred -----hh-----hccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcC-cE
Confidence 00 01112333334445555665554432478888888888899999999874 54
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.83 E-value=5.7e-08 Score=101.96 Aligned_cols=126 Identities=11% Similarity=0.049 Sum_probs=92.4
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCC-----ccccccc--ceEEeccccccC-CCccEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSR-----KFDVSKF--GVIIAGAQKNIG-PAGITVV 338 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~-----pIDv~~~--gvl~asaqK~lG-P~Glg~l 338 (621)
.++.+|..++..|.+|...|+ +++++|++++||++.+.+.. +....++ |++++++||+++ |.|.|++
T Consensus 210 ~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~ 289 (434)
T d2z67a1 210 GNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLV 289 (434)
T ss_dssp TCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEE
T ss_pred CCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEEcCccccccCCCcccc
Confidence 367788888888889999886 45689999999999876552 2223333 489999999996 9999999
Q ss_pred EEchhH-HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 339 IVREDL-LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 339 ivr~~l-l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+.+++. ++++.+ ...++.+......+..++.++... |++.+.++..++++++++.|+++
T Consensus 290 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~a~l~~~~~~-g~~~~~~~~~~~a~~l~~~L~~l 349 (434)
T d2z67a1 290 YSTDAEFIKEISL---------------SYPGRASATPVVNTLVSLLSMGSK-NYLELVKNQKNSKKLLDELLNDL 349 (434)
T ss_dssp EESCHHHHHHHHT---------------TSCSCBCSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHh---------------hcccccccchHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHh
Confidence 998664 333321 112222333455556677778777 79999999999999999999875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=98.81 E-value=1.4e-07 Score=97.81 Aligned_cols=131 Identities=12% Similarity=0.110 Sum_probs=77.6
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccC---CC---cc-cccccc--eEEeccccccCC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFL---SR---KF-DVSKFG--VIIAGAQKNIGP 332 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G---~~---pI-Dv~~~g--vl~asaqK~lGP 332 (621)
..+...++.+++..|+||...+. +++++++++|.|-+-.-. .. ++ .+++++ +++.|..|+++|
T Consensus 168 ~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 247 (403)
T d1wsta1 168 GKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAP 247 (403)
T ss_dssp TCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCG
T ss_pred cccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecC
Confidence 34567778888889999998884 356899999999765321 11 11 123344 788899999983
Q ss_pred -CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHHHHHH
Q psy8733 333 -AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW-IKRQGGLAKMEQNSLQKSVLLYQEI 410 (621)
Q Consensus 333 -~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~-i~~~gGl~~i~~r~~~la~~L~e~L 410 (621)
-.+|+++.++++++.+.. .. ......++.....+..+.++. ..+. .++.+.+..++..+.+.+.|
T Consensus 248 G~RiG~~i~~~~~i~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L 314 (403)
T d1wsta1 248 GFRIGWVAAHPHLIRKMEI-------AK-----QSIDLCTNTFGQAIAWKYVENGYLDE-HIPKIIEFYKPRRDAMLEAL 314 (403)
T ss_dssp GGCCEEEEECHHHHHHHHH-------HH-----HHHHSSCCHHHHHHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHH-------HH-----hhhccccccchhhhHHhhhhccccch-hHHHHHHHHHHHHHHHHHHH
Confidence 358999999988765421 00 011112222222222222221 1111 35666777777777777777
Q ss_pred Hcc
Q psy8733 411 DNS 413 (621)
Q Consensus 411 ~~~ 413 (621)
.+.
T Consensus 315 ~~~ 317 (403)
T d1wsta1 315 EEY 317 (403)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.79 E-value=1.5e-09 Score=112.27 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=72.7
Q ss_pred hhhHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCceeeeee---cccCCCccCCCchhHHHHHHHHHHHHHhcCC
Q psy8733 446 AFFFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTVFHFKI---NADNNSVYNTPPTFVVHVIQRVFAWIKRQGG 521 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~---~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg 521 (621)
.+.+|++|+|+||+| ||+|++++++|++++++.++. +.++|+.. ....+++++|||+..||.+...|+++.+.|
T Consensus 172 ~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~-~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~- 249 (348)
T d1iuga_ 172 AMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPR-GYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRL- 249 (348)
T ss_dssp GGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCC-SSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGH-
T ss_pred cccCCEEEeccccceecCCceeeeeechHHHhhhccc-ccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHH-
Confidence 456899999999999 799999999999999987653 33444333 345789999999999999999999998763
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q psy8733 522 LAKMEQNSLQKSVLLYQEIDN 542 (621)
Q Consensus 522 ~~~~~~~~~~ka~~lY~~id~ 542 (621)
.+. .++.+.+++++|+.++.
T Consensus 250 ~~~-~~~~~~~~~~~~~~~~~ 269 (348)
T d1iuga_ 250 EEH-LALKAWQNALLYGVGEE 269 (348)
T ss_dssp HHH-HHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHhhhhhh
Confidence 333 34555556677776643
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.79 E-value=3.4e-07 Score=94.24 Aligned_cols=141 Identities=13% Similarity=0.048 Sum_probs=83.8
Q ss_pred CCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccc--cccc---eEEeccccccCCCccEEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDV--SKFG---VIIAGAQKNIGPAGITVV 338 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv--~~~g---vl~asaqK~lGP~Glg~l 338 (621)
.+++++++|..+| ..|...++ +++++++++|-|++|++|+..=.- -.+| +..+...|.++.-|=|++
T Consensus 116 ~~~~~t~avi~vh---~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i 192 (371)
T d2fnua1 116 LINERTKAIVSVD---YAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAV 192 (371)
T ss_dssp GCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEE
T ss_pred hccchhhcccccc---ccccccccccccccccccchhhccchhhccCceeccccCCccccccccccccccccccccceEE
Confidence 4778999999997 55877774 456789999999999999864321 1233 778888999964444555
Q ss_pred EEc-hhHHhhhCCCC--C-ce-eeccc-cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 339 IVR-EDLLEYALPIT--P-TV-FHFKI-NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 339 ivr-~~ll~~~~~~~--P-~~-ld~~~-~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+.+ +++.+++.... . .. ..+.. ...-+.-+...++.+.. ++..++ -++.+.++-++.+.+..+.|..
T Consensus 193 ~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aai----gl~qL~---~l~~~~~~R~~~~~~y~~~l~~ 265 (371)
T d2fnua1 193 VTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSAL----GLSQLK---KAPFLMQKREEAALTYDRIFKD 265 (371)
T ss_dssp EESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHH----HHHHHT---THHHHHHHHHHHHHHHHHHHTT
T ss_pred Eeechhhhhhcccccccccccccccccccccccccccccchhhhh----hhhhhh---hccchhhhhhhhhhhhcccccc
Confidence 555 45555543211 1 00 00000 00111112223333322 233443 3677777777888888899988
Q ss_pred cCCcccC
Q psy8733 413 SDKFYEC 419 (621)
Q Consensus 413 ~~g~~~~ 419 (621)
++++...
T Consensus 266 ~~~~~~~ 272 (371)
T d2fnua1 266 NPYFTPL 272 (371)
T ss_dssp CSSEEES
T ss_pred ccccccc
Confidence 8755443
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.78 E-value=2.4e-07 Score=96.23 Aligned_cols=263 Identities=10% Similarity=0.058 Sum_probs=143.5
Q ss_pred CCceeccCC-----CCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEcCC
Q psy8733 50 HPVINFGAG-----PAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPN-NYKILFLQGG 123 (621)
Q Consensus 50 ~~~~lf~aG-----Ps~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~-~yeI~f~~gg 123 (621)
++++.++.| +-+.|+.+++++.+.+.+-. ++.+ ...=.+++. +...+.+++..|.+- ..+|+++ .|
T Consensus 30 ~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~-~~Y~---~~~G~~~LR---~aia~~~~~~~g~~~~~~~i~i~-~G 101 (395)
T d1xi9a_ 30 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-NYYG---DSEGLPELR---KAIVEREKRKNGVDITPDDVRVT-AA 101 (395)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-CSCC---CTTCCHHHH---HHHHHHHHHHHCCCCCGGGEEEE-SH
T ss_pred CCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCC-CCCC---CCCCCHHHH---HHHHHhhhhcccccccccccccc-cc
Confidence 467888876 34788999999999875411 1100 110012222 233344455556532 2357776 45
Q ss_pred cchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccc
Q psy8733 124 GTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVS 203 (621)
Q Consensus 124 gT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~ 203 (621)
+++ .+..+...+..+||++++..+++... ...++..|...+-.+..
T Consensus 102 ~~~-------------------------------~~~~~~~~~~~~Gd~vlv~~P~y~~~--~~~~~~~g~~~v~v~~~- 147 (395)
T d1xi9a_ 102 VTE-------------------------------ALQLIFGALLDPGDEILVPGPSYPPY--TGLVKFYGGKPVEYRTI- 147 (395)
T ss_dssp HHH-------------------------------HHHHHHHHHCCTTCEEEEEESCCHHH--HHHHHHTTCEEEEEEEE-
T ss_pred cch-------------------------------hhhhhhhhhcCCCCEEEEcCCccccc--hhhhhhcCCEEEEEecc-
Confidence 666 23335556678888888888877643 44566777643322110
Q ss_pred cccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccc
Q psy8733 204 KYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNE 283 (621)
Q Consensus 204 ~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnE 283 (621)
-...|. .+.|++ ...+.+++++|.+|+-.
T Consensus 148 ---------------------------~~~~~~--~d~~~~----------------------~~~~~~~~~~v~l~~P~ 176 (395)
T d1xi9a_ 148 ---------------------------EEEDWQ--PDIDDI----------------------RKKITDRTKAIAVINPN 176 (395)
T ss_dssp ---------------------------GGGTSE--ECHHHH----------------------HHHCCTTEEEEEEESSC
T ss_pred ---------------------------cccccc--chHHHH----------------------HHhhcccccEEEecCCC
Confidence 000111 111110 11356789999999999
Q ss_pred ccccccccc--------ccccCCCcEEEecccccCC------Ccccccccc--eEEeccccccCCCc--cEEEEEch--h
Q psy8733 284 TVDGVEFNY--------IPDSQGIPLVSDMSSNFLS------RKFDVSKFG--VIIAGAQKNIGPAG--ITVVIVRE--D 343 (621)
Q Consensus 284 T~tGv~~p~--------i~~~~g~llvvDavSs~G~------~pIDv~~~g--vl~asaqK~lGP~G--lg~livr~--~ 343 (621)
|.||...+. ++++++++++.|-+-.... .+..+.+.+ +++.|.=|.+|.+| +|.+++.. .
T Consensus 177 NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~ 256 (395)
T d1xi9a_ 177 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPEN 256 (395)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTC
T ss_pred CCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHH
Confidence 999999884 3457899999998755322 122233333 77888999999888 67766542 1
Q ss_pred HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 344 LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 344 ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+..+.. ..... ......++.+...++..+++--.+ =++.+.+..+++.+.+++.|++++++
T Consensus 257 ~~~~~~~-------~~~~~--~~~~~~~~~~~q~a~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~ 318 (395)
T d1xi9a_ 257 KLSEVRE-------AIDRL--ARIRLCPNTPAQFAAIAGLTGPMD--YLKEYMKKLKERRDYIYKRLNEIPGI 318 (395)
T ss_dssp TTHHHHH-------HHHHH--HHHTCCSCSHHHHHHHHHHHSCCH--HHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred HHHHHHH-------HHHHh--hcCCCCcCHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 1111100 00000 011122333333333333321111 15566677778888999999887644
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=9.9e-08 Score=99.66 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=49.1
Q ss_pred ceEEEEecccccccccccc--------ccccCCCcEEEecccccCC---Cc---c-cccccc--eEEeccccccCCCc--
Q psy8733 274 ASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS---RK---F-DVSKFG--VIIAGAQKNIGPAG-- 334 (621)
Q Consensus 274 t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~---~p---I-Dv~~~g--vl~asaqK~lGP~G-- 334 (621)
..++.++...|.||...+. +++++++++|+|-+-+-.. .+ + .....+ +++.++-|+++ +|
T Consensus 184 ~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~-~G~R 262 (420)
T d1vp4a_ 184 KFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLR 262 (420)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGC
T ss_pred ceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccc-cccc
Confidence 3444555668999998873 4568999999998754321 11 1 111223 66777777776 45
Q ss_pred cEEEEEchhHHhhh
Q psy8733 335 ITVVIVREDLLEYA 348 (621)
Q Consensus 335 lg~livr~~ll~~~ 348 (621)
+|+++..+++++++
T Consensus 263 iG~~~~~~~~i~~l 276 (420)
T d1vp4a_ 263 IGMVAGSKEFIRKI 276 (420)
T ss_dssp EEEEECCHHHHHHH
T ss_pred cccccccchhhhhh
Confidence 89999999888765
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=98.72 E-value=6.4e-07 Score=92.97 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=78.9
Q ss_pred CCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcc--cccccc---eEEeccccccC-CCccEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKF--DVSKFG---VIIAGAQKNIG-PAGITV 337 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pI--Dv~~~g---vl~asaqK~lG-P~Glg~ 337 (621)
.+++++++|..+| ..|...+. +++++++++|-|++|++|+.-- .+-.+| ++.++..|.++ ..| |+
T Consensus 118 ~i~~~tk~i~~~~---~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~G-G~ 193 (384)
T d1b9ha_ 118 AVTPRTKVIMPVH---MAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEG-GA 193 (384)
T ss_dssp HCCTTEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSC-EE
T ss_pred ccccccccccccc---ccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceeccccccccccccc-ch
Confidence 3678899987765 45665554 4568899999999999998531 122233 77788999996 444 55
Q ss_pred EEEc-hhHHhhhCCC------CCc-eeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 338 VIVR-EDLLEYALPI------TPT-VFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 338 livr-~~ll~~~~~~------~P~-~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
++.+ +++.+++... .+. -..|. +...+..+--.++.+.. ++..|+ -++.+.++-++.++++.+.
T Consensus 194 i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~G~n~rms~l~Aai----g~~qL~---~ld~~~~~R~~~~~~y~~~ 265 (384)
T d1b9ha_ 194 VVFPDGETEKYETAFLRHSCGRPRDDRRYF-HKIAGSNMRLNEFSASV----LRAQLA---RLDEQIAVRDERWTLLSRL 265 (384)
T ss_dssp EEECTTCHHHHHHHHHHTBTTCCTTCSSCC-CCSCCCBCBCBHHHHHH----HHHHHT---THHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhcCCCCcccccccc-ccccccccccccchhhh----hhhhhh---hcccchhhhhhhhhhhhhh
Confidence 5554 5555544221 000 00000 00011112123333322 233332 3677777778888999999
Q ss_pred HHccCCcc
Q psy8733 410 IDNSDKFY 417 (621)
Q Consensus 410 L~~~~g~~ 417 (621)
|+.++++.
T Consensus 266 L~~~~~i~ 273 (384)
T d1b9ha_ 266 LGAIDGVV 273 (384)
T ss_dssp HHTSTTCE
T ss_pred hhcccccc
Confidence 99887654
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=2.1e-07 Score=95.35 Aligned_cols=253 Identities=15% Similarity=0.108 Sum_probs=144.4
Q ss_pred CCceeccCC-CC-CCCHHHHHHHHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHhCCCC-CCEEEEEcCCcch
Q psy8733 50 HPVINFGAG-PA-KLPREVLEEVKETLLDYESTGISVMEMSHRSADYTKINNDTQAALRELLNVPN-NYKILFLQGGGTG 126 (621)
Q Consensus 50 ~~~~lf~aG-Ps-~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~i~~~ar~~La~Ll~~p~-~yeI~f~~gggT~ 126 (621)
+.++.++-| |. +.|+.+++++.+.+.+-. .+.+ ...=.+++.+ ...+.+.+..+.+- ..+|+++ .|+++
T Consensus 28 ~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~-~~Y~---~~~G~~~lR~---aia~~~~~~~~~~~~~~~i~~t-~G~~~ 99 (375)
T d1o4sa_ 28 EDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-VKYT---DPRGIYELRE---GIAKRIGERYKKDISPDQVVVT-NGAKQ 99 (375)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-CCCC---CTTCCHHHHH---HHHHHHHHHHTCCCCGGGEEEE-SHHHH
T ss_pred CCeEECCCcCCCCCCCHHHHHHHHHHHhcCC-cCCC---CCcCCHHHHH---HHHhhhhhcccccccccccccc-CcHHH
Confidence 357788877 43 468999999998874311 1111 1110133333 33445555556532 3367766 56777
Q ss_pred hhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeeccccccc
Q psy8733 127 MFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYV 206 (621)
Q Consensus 127 ~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~ 206 (621)
++..++..|+.+|+++.+..++++... ..+...|......+..
T Consensus 100 -------------------------------al~~~~~~l~~~gd~vlv~~P~y~~~~--~~~~~~~~~~~~~~~~---- 142 (375)
T d1o4sa_ 100 -------------------------------ALFNAFMALLDPGDEVIVFSPVWVSYI--PQIILAGGTVNVVETF---- 142 (375)
T ss_dssp -------------------------------HHHHHHHHHCCTTCEEEEEESCCTTHH--HHHHHTTCEEEEEECC----
T ss_pred -------------------------------HHHHHHHHHhCCCCEEEEccCccccch--hhhhcccccccccccc----
Confidence 333455667778888887777666542 2344455432221110
Q ss_pred ccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccc--cCCCCCceEEEEecccc
Q psy8733 207 SIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQST--WNRDPEASYLYYCDNET 284 (621)
Q Consensus 207 ~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~--l~i~~~t~~V~~thnET 284 (621)
-. ....++.+. ....++++++.+++-.|
T Consensus 143 ------------------------~~--------------------------~~~~~~~~~~~~~~~~~~~~~~l~nP~N 172 (375)
T d1o4sa_ 143 ------------------------MS--------------------------KNFQPSLEEVEGLLVGKTKAVLINSPNN 172 (375)
T ss_dssp ------------------------GG--------------------------GTTCCCHHHHHHTCCTTEEEEEEESSCT
T ss_pred ------------------------cc--------------------------ccccchhHHHHHhhccCccEEEEeCCCC
Confidence 00 001111121 13567889999999999
Q ss_pred cccccccc--------ccccCCCcEEEecccccCCCcc------c-ccccc--eEEeccccccCCCc--cEEEEEchhHH
Q psy8733 285 VDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKF------D-VSKFG--VIIAGAQKNIGPAG--ITVVIVREDLL 345 (621)
Q Consensus 285 ~tGv~~p~--------i~~~~g~llvvDavSs~G~~pI------D-v~~~g--vl~asaqK~lGP~G--lg~livr~~ll 345 (621)
.||...+. +++++++.+|.|-+-......- . .+.++ +++.|.=|.+|.+| +|.++..++.+
T Consensus 173 PTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~ 252 (375)
T d1o4sa_ 173 PTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVA 252 (375)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHH
T ss_pred CccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccch
Confidence 99999873 3467899999998665543211 1 12334 88899999999777 79999998887
Q ss_pred hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 346 EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 346 ~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+.+... .. ......+ ... ...+...+.+ -.....++.+++.+.+++.|++.+
T Consensus 253 ~~~~~~-------~~----~~~~~~~-~~~---~~~~~~~~~~--~~~~~~~~~~~r~~~~~~~l~~~g 304 (375)
T d1o4sa_ 253 TAVSKI-------QS----HTTSCIN-TVA---QYAALKALEV--DNSYMVQTFKERKNFVVERLKKMG 304 (375)
T ss_dssp HHHHHH-------HH----HHTCSCC-HHH---HHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhh-------hc----ccccccc-ccc---hhhhhhhccc--chhhhHHHHHHHHHHHHHHHHhcC
Confidence 654210 00 0011111 111 1122333333 356667777888888888888764
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=5.3e-07 Score=91.93 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=53.3
Q ss_pred CCceEEEEecccccccccccc-----c---cccCCCcEEEecccccCCC---cccccccc--eEEeccccccCCCc--cE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----I---PDSQGIPLVSDMSSNFLSR---KFDVSKFG--VIIAGAQKNIGPAG--IT 336 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i---~~~~g~llvvDavSs~G~~---pIDv~~~g--vl~asaqK~lGP~G--lg 336 (621)
+++++|.+|+..+.+|...+. + .+.++.+++-|+...+... +......+ +++.|--|.+|.+| +|
T Consensus 143 ~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiG 222 (354)
T d1fg7a_ 143 DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCG 222 (354)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCE
T ss_pred cccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhcccccceEEeCCccccCCCccccc
Confidence 579999999999999999873 1 1234445555555554321 11222233 77789999999776 79
Q ss_pred EEEEchhHHhhh
Q psy8733 337 VVIVREDLLEYA 348 (621)
Q Consensus 337 ~livr~~ll~~~ 348 (621)
+++.++++++++
T Consensus 223 y~i~~~~~i~~l 234 (354)
T d1fg7a_ 223 FTLANEEVINLL 234 (354)
T ss_dssp EEEECHHHHHHH
T ss_pred cccccchhhhhh
Confidence 999999988765
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=98.56 E-value=1.9e-06 Score=90.31 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=91.2
Q ss_pred CceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCc---------ccc-cccceEEeccccccCCCccEE
Q psy8733 273 EASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRK---------FDV-SKFGVIIAGAQKNIGPAGITV 337 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~p---------IDv-~~~gvl~asaqK~lGP~Glg~ 337 (621)
..++|.+-.+-..+|-..|+ +++++++.++||-+.++|..- .++ ++.++++++--|.+|..| |+
T Consensus 177 ~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G-g~ 255 (396)
T d2bwna1 177 APKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-GY 255 (396)
T ss_dssp SCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-EE
T ss_pred CceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc-cc
Confidence 45567777777778988885 456889999999999999853 122 334699999999999776 47
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccC-CchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYN-TPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~-TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+..++++.+.+....+ ...|. .+|...+.+..++++.+.+. ..+.+.++.+.+.+++++.+...+
T Consensus 256 v~~~~~~i~~l~~~~~-----------~~ifStalpp~~~aa~~~al~i~~~~-~~~~~r~~l~~~~~~~~~~l~~~g 321 (396)
T d2bwna1 256 IAASARMVDAVRSYAP-----------GFIFSTSLPPAIAAGAQASIAFLKTA-EGQKLRDAQQMHAKVLKMRLKALG 321 (396)
T ss_dssp EEECHHHHHHHHHHCH-----------HHHTSBCCCHHHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHhhcc-----------hhhhcccCcHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8889988876532111 12232 34556667777788887654 245566677778889999998875
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=98.55 E-value=1.6e-06 Score=87.65 Aligned_cols=127 Identities=9% Similarity=0.050 Sum_probs=79.2
Q ss_pred CCCceEEEEecccccccccccc--cc--ccCCCcEEEecccccCC---Ccccccccc--eEEeccccccCCCc--cEEEE
Q psy8733 271 DPEASYLYYCDNETVDGVEFNY--IP--DSQGIPLVSDMSSNFLS---RKFDVSKFG--VIIAGAQKNIGPAG--ITVVI 339 (621)
Q Consensus 271 ~~~t~~V~~thnET~tGv~~p~--i~--~~~g~llvvDavSs~G~---~pIDv~~~g--vl~asaqK~lGP~G--lg~li 339 (621)
.++++++.+|+-.|.||...+. +. ..+++++|+|-.-.-.. .+......+ +++.|--|.+|.+| +|+++
T Consensus 136 ~~~~~~l~l~nP~NPtG~~~s~~~l~~~~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~ 215 (334)
T d2f8ja1 136 VGEGDVVFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVV 215 (334)
T ss_dssp CCTTEEEEEESSCTTTCCCCCHHHHHHHHTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEE
T ss_pred cccceEEEecccccccceeecHHHhhccccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcc
Confidence 4578999999999999999874 22 35788888886432111 111112223 78889999998666 89999
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
.++++++++.... .....+.....++.+.++ ...-++.+.++.++..+.+.+.|++++
T Consensus 216 ~~~~~i~~l~~~~--------------~~~~~s~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~g 273 (334)
T d2f8ja1 216 ASEKFIDAYNRVR--------------LPFNVSYVSQMFAKVALD---HREIFEERTKFIVEERERMKSALREMG 273 (334)
T ss_dssp ECHHHHHHHHHHS--------------CTTCSCHHHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHhh--------------cccccchhhhhhcccccc---cccchhhHHHHHHHHHHHHHHHHHHCC
Confidence 9999887653210 011122223333333333 221256666777777788889888874
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=98.54 E-value=5e-06 Score=86.48 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=84.6
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCc-------cccccc-c--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK-------FDVSKF-G--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p-------IDv~~~-g--vl~asaqK~lG 331 (621)
..++++++.+|.-.|.||...+. +++++++++|.|.+-...... ..+.+. + +.+.|.=|.+|
T Consensus 168 ~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~ 247 (418)
T d2r5ea1 168 FNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFS 247 (418)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT
T ss_pred hhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCcccc
Confidence 46789999999999999998874 345789999999876543311 122222 2 67788889998
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHH---HHhh--CCHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAW---IKRQ--GGLAKMEQNSLQKSV 404 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~---i~~~--gGl~~i~~r~~~la~ 404 (621)
.+| +|+++..+++++.+.. .......++++.....+ ...+.- ..+. .=++.+.++.+.+.+
T Consensus 248 ~pGlRiG~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~q~a~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 315 (418)
T d2r5ea1 248 LTGWKIGWAYGPEALLKNLQM-----------VHQNCVYTCATPIQEAI-AVGFETELKRLKSPECYFNSISGELMAKRD 315 (418)
T ss_dssp CGGGCCEEEESCHHHHHHHHH-----------HHTTTTCSCCHHHHHHH-HHHHHHHHTTTTSTTSHHHHHHHHHHHHHH
T ss_pred CCCcccccccccchhhhhhhh-----------cccccccccccchhhhc-cccccccccccccchhhHHHHHHHHHHhhh
Confidence 666 8999999988775521 01112233333322222 222211 1111 015677788888888
Q ss_pred HHHHHHHccC
Q psy8733 405 LLYQEIDNSD 414 (621)
Q Consensus 405 ~L~e~L~~~~ 414 (621)
.+++.|++++
T Consensus 316 ~l~~~L~~~g 325 (418)
T d2r5ea1 316 YMASFLAEVG 325 (418)
T ss_dssp HHHHHHHHTT
T ss_pred hHHhhHhhcC
Confidence 9999998874
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1e-05 Score=84.08 Aligned_cols=134 Identities=13% Similarity=0.202 Sum_probs=85.9
Q ss_pred CCCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC----Ccc---ccccc-c--eEEecccccc
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS----RKF---DVSKF-G--VIIAGAQKNI 330 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~----~pI---Dv~~~-g--vl~asaqK~l 330 (621)
...++++++.++...|.||...+. +++++++++|.|.+-.-.. .+. .+.++ + +++.|.=|.+
T Consensus 167 ~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 246 (418)
T d1w7la_ 167 KFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF 246 (418)
T ss_dssp HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT
T ss_pred cccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccc
Confidence 356789999999999999998873 3457899999999854421 122 33232 3 7889999998
Q ss_pred CCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHH---hh--CCHHHHHHHHHHHH
Q psy8733 331 GPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK---RQ--GGLAKMEQNSLQKS 403 (621)
Q Consensus 331 GP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~---~~--gGl~~i~~r~~~la 403 (621)
+.+| +|.++..+++++++.. . .....+++|+... .++..++.--. +. .-+..+.++.+++.
T Consensus 247 ~~pG~RvG~~v~~~~~~~~l~~-------~----~~~~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r 314 (418)
T d1w7la_ 247 SATGWKVGWVLGPDHIMKHLRT-------V----HQNSVFHCPTQSQ-AAVAESFEREQLLFRQPSSYFVQFPQAMQRCR 314 (418)
T ss_dssp TCGGGCCEEEECCHHHHHHHHH-------H----HHTTTSCCCHHHH-HHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHH
T ss_pred cCCCCcccccccchhhhhhhcc-------c----cccccccccchhh-HHHHHHhhhccccccccccccccchhhhhhhh
Confidence 7555 8999999988766532 0 1112334444333 33333333221 11 01456677777788
Q ss_pred HHHHHHHHccC
Q psy8733 404 VLLYQEIDNSD 414 (621)
Q Consensus 404 ~~L~e~L~~~~ 414 (621)
+.+++.|++.+
T Consensus 315 ~~l~~~L~~~g 325 (418)
T d1w7la_ 315 DHMIRSLQSVG 325 (418)
T ss_dssp HHHHHHHHTTT
T ss_pred hhhhhhhhhcC
Confidence 88999998764
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.46 E-value=2e-06 Score=84.31 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=40.2
Q ss_pred HHHHHHHHHccCccccCCCCCCccceeeccCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 559 ELFLKEAKAHNMIQLKGHRLVGGIRASIYNAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 559 ~~~~~~~~~~~i~~~~g~~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
.+|.+.++++||+..... .+.+|+++-+.+|.||++.+++-|+++-++++
T Consensus 294 ~~l~~~L~~~Gi~v~~~~--~~~iRi~~~~~~t~edid~~v~~l~~v~~~~~ 343 (343)
T d1m6sa_ 294 HGFIEALRNSGVLANAVS--DTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS 343 (343)
T ss_dssp HHHHHHHHHHTEECEEEE--TTEEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 457778888898743321 35699999899999999999999999998864
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=98.45 E-value=1.4e-05 Score=81.84 Aligned_cols=132 Identities=12% Similarity=0.119 Sum_probs=82.2
Q ss_pred CCCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCccc----ccc-cc--eEEeccccccCCC
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKFD----VSK-FG--VIIAGAQKNIGPA 333 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pID----v~~-~g--vl~asaqK~lGP~ 333 (621)
...++++++.++.-.|.||...+. +++++++++|.|-+-+....+=. ... .+ +++.|.=|.++.+
T Consensus 155 ~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~ 234 (389)
T d2gb3a1 155 FINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSAC 234 (389)
T ss_dssp GCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCG
T ss_pred hcccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCc
Confidence 466789999999999999998873 34678999999976543321110 111 12 6777888999878
Q ss_pred c--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 334 G--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 334 G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
| +|.++..++.+.+... . .......++.....+...++....+. ++.+.++.+++.+.+++.|+
T Consensus 235 GlRiG~~~~~~~~i~~~~~---------~---~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~L~ 300 (389)
T d2gb3a1 235 GARVGCLITRNEELISHAM---------K---LAQGRLAPPLLEQIGSVGLLNLDDSF--FDFVRETYRERVETVLKKLE 300 (389)
T ss_dssp GGCCEEEECSCHHHHHHHH---------H---HHHHSCCCCHHHHHHHHHHHTCCHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeeeeccchhHHHHHh---------h---hhhccccccccccccccccccccchh--cccccccccccchhhhhhhh
Confidence 8 6888887655432210 0 01112233333334333333222222 56777888888889999999
Q ss_pred ccC
Q psy8733 412 NSD 414 (621)
Q Consensus 412 ~~~ 414 (621)
+++
T Consensus 301 ~~~ 303 (389)
T d2gb3a1 301 EHG 303 (389)
T ss_dssp HTT
T ss_pred hhc
Confidence 886
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.43 E-value=6.3e-07 Score=93.74 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=91.8
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEeccccc-----CCCcccccccceEEecccccc-CCCccEEEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNF-----LSRKFDVSKFGVIIAGAQKNI-GPAGITVVIV 340 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~-----G~~pIDv~~~gvl~asaqK~l-GP~Glg~liv 340 (621)
.++++|.+.....+ -..|. |+++.|+++++|++.-. |..|=+++..|++.++.||.| ||.| |++..
T Consensus 162 ~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrg-g~I~~ 238 (405)
T d1kl1a_ 162 HRPKLIVAAASAYP--RIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILC 238 (405)
T ss_dssp HCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEE
T ss_pred hCcceEEecccccc--cccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhhhhheeccccccccCCCC-ceEEe
Confidence 46777776654443 22232 56678999999998754 334445555689999999999 7998 45566
Q ss_pred chhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 341 REDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 341 r~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
+++..+++.. .--+.+-+.|-...|.+++.+|...... ......++..+.++.|-+.|.+.| +.+.
T Consensus 239 ~~~~~~~i~~-----------avfPg~qggp~~~~iAa~Aval~Ea~~~-~fk~Ya~qvv~NAkaLa~~L~~~G-~~vv 304 (405)
T d1kl1a_ 239 QEQFAKQIDK-----------AIFPGIQGGPLMHVIAAKAVAFGEALQD-DFKAYAKRVVDNAKRLASALQNEG-FTLV 304 (405)
T ss_dssp CHHHHHHHHH-----------HHTTTTCSSCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHTT-CEEG
T ss_pred cchhHHHHHh-----------hhCcccccCcchhHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHhcCC-ceee
Confidence 7776655421 0113455677788999999999886654 357788888889999999998875 5443
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.43 E-value=7.9e-06 Score=83.48 Aligned_cols=222 Identities=15% Similarity=0.056 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhHHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEE
Q psy8733 96 KINNDTQAALRELLNVPNNYKILFLQGGGTGMFAAVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADY 175 (621)
Q Consensus 96 ~i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~ 175 (621)
..+++-++.+++++|.+. ++++ +|||. |+-+...++++++||||+++.- -|.+.
T Consensus 21 ~~~~~fE~~~~~~~~~~~---~~~~-~SgT~-----Al~lal~~l~~~~gdeVi~p~~----t~~a~------------- 74 (374)
T d1o69a_ 21 EFVNRFEQSVKDYSKSEN---ALAL-NSATA-----ALHLALRVAGVKQDDIVLASSF----TFIAS------------- 74 (374)
T ss_dssp HHHHHHHHHHHHHHCCSE---EEEE-SCHHH-----HHHHHHHHTTCCTTCEEEEESS----SCGGG-------------
T ss_pred HHHHHHHHHHHHHHCcCe---EEEe-CCHHH-----HHHHHHHHcCCCCcCEEEeCCc----chHhh-------------
Confidence 356777889999999863 6666 67998 5666666789999999998853 12111
Q ss_pred EEcChHHHHHHHHHHHhCCceeeecccccccccCCCCCCCCCCCccccccccCccccCccchhhhHHHhhhccccccccc
Q psy8733 176 VVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPK 255 (621)
Q Consensus 176 v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~ 255 (621)
.......|...+..+.. +..+....+.+
T Consensus 75 ----------~~~~~~~g~~pv~~Di~-----------------------------~~~~~~~~~~~------------- 102 (374)
T d1o69a_ 75 ----------VAPICYLKAKPVFIDCD-----------------------------ETYNIDVDLLK------------- 102 (374)
T ss_dssp ----------THHHHHTTCEEEEECBC-----------------------------TTSSBCHHHHH-------------
T ss_pred ----------HHHHhhccceeEecccc-----------------------------ccccccccccc-------------
Confidence 11223445544333211 00000000000
Q ss_pred CCCccCCCCccccCCCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCccc--ccccc---eEEec
Q psy8733 256 VSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFD--VSKFG---VIIAG 325 (621)
Q Consensus 256 ~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pID--v~~~g---vl~as 325 (621)
......++++++|.++|. .|...++ +++++|+++|-|++|++|+.-=. +-.+| +..+.
T Consensus 103 ---------~~~~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~ 170 (374)
T d1o69a_ 103 ---------LAIKECEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYN 170 (374)
T ss_dssp ---------HHHHHCSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECC
T ss_pred ---------ccchhccccccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEecc
Confidence 001235678999999875 4666664 56789999999999999985311 12233 66777
Q ss_pred cccccCCCccEEEEEc-hhHHhhhCCCCC--ceeeccc-cccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy8733 326 AQKNIGPAGITVVIVR-EDLLEYALPITP--TVFHFKI-NADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQ 401 (621)
Q Consensus 326 aqK~lGP~Glg~livr-~~ll~~~~~~~P--~~ld~~~-~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~ 401 (621)
+-|.++--|=|+++.+ +++.+++....- ....+.. ...-+.-+.-..+.+..+ +..+. -++.+.++.++
T Consensus 171 ~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig----~~qL~---~l~~~i~~r~~ 243 (374)
T d1o69a_ 171 GNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIG----VAQME---VLEQRVLKKRE 243 (374)
T ss_dssp TTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHH----HHHHT---THHHHHHHHHH
T ss_pred CccccccccceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhh----HHHHh---hhhhhcchhHH
Confidence 7799974444666666 444444422110 0000000 011111122333333332 23332 25666677777
Q ss_pred HHHHHHHHHHccC
Q psy8733 402 KSVLLYQEIDNSD 414 (621)
Q Consensus 402 la~~L~e~L~~~~ 414 (621)
.++++.+.|....
T Consensus 244 i~~~y~~~L~~~~ 256 (374)
T d1o69a_ 244 IYEWYKEFLGEYF 256 (374)
T ss_dssp HHHHHHHHHTTTE
T ss_pred HHHHHHhhccccc
Confidence 8888888887653
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=98.41 E-value=3.2e-06 Score=88.56 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=81.6
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----ccc-------------ccccc--eE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----KFD-------------VSKFG--VI 322 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----pID-------------v~~~g--vl 322 (621)
...+++++.+|+-.|.||...+. +++++++++|+|-+-+.... +++ .+.++ ++
T Consensus 186 ~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~ 265 (431)
T d1m7ya_ 186 RNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHV 265 (431)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEE
T ss_pred ccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEE
Confidence 45678999999999999998873 24578999999987543210 011 11123 67
Q ss_pred EeccccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q psy8733 323 IAGAQKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSL 400 (621)
Q Consensus 323 ~asaqK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~ 400 (621)
+.|.-|.+|-+| +|.++.+++++..... . ........++....+.++....++..+. ++.+.++.+
T Consensus 266 ~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~---------~-~~~~~~~~~~~~~~~~a~l~~~~~~~~~--~~~~~~~~~ 333 (431)
T d1m7ya_ 266 VYSLSKDLGLPGFRVGAIYSNDDMVVAAAT---------K-MSSFGLVSSQTQHLLSAMLSDKKLTKNY--IAENHKRLK 333 (431)
T ss_dssp EEESSSSSCCGGGCEEEEEESCHHHHHHHH---------H-HGGGSCCCHHHHHHHHHHHHCHHHHHHH--HHHHHHHHH
T ss_pred EecCcccccCCCCccceeccchhhhHHHHH---------H-Hhccccccccccchhhhhhccchhhhhh--hhhhhhhhh
Confidence 778999999777 7888888877543211 0 0000111222223333333333444443 566677777
Q ss_pred HHHHHHHHHHHccC
Q psy8733 401 QKSVLLYQEIDNSD 414 (621)
Q Consensus 401 ~la~~L~e~L~~~~ 414 (621)
++.+.+.+.|++.+
T Consensus 334 ~~~~~l~~~L~~~g 347 (431)
T d1m7ya_ 334 QRQKKLVSGLQKSG 347 (431)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred hhhhhhhhhhhcCC
Confidence 88888888888753
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=98.35 E-value=1.2e-05 Score=82.74 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=51.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCC------C--cccccc-cc--eEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLS------R--KFDVSK-FG--VIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~------~--pIDv~~-~g--vl~asaqK~l 330 (621)
.+++++++.+|+-.|+||...+. +++++++++|+|-+=+-.. . ...... .+ +++.|.=|.+
T Consensus 161 ~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 240 (394)
T d1c7na_ 161 KDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF 240 (394)
T ss_dssp TCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH
T ss_pred ccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccc
Confidence 46789999999999999999883 3457999999997643211 1 111111 12 7778888999
Q ss_pred CCCc--cEEEEEchhHH
Q psy8733 331 GPAG--ITVVIVREDLL 345 (621)
Q Consensus 331 GP~G--lg~livr~~ll 345 (621)
|-+| +|.+++.+..+
T Consensus 241 ~~~G~R~g~~~~~~~~i 257 (394)
T d1c7na_ 241 NIAGMGMSNIIIKNPDI 257 (394)
T ss_dssp TCGGGCCEEEECCCHHH
T ss_pred cccccccccccccChhh
Confidence 8666 45666665443
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.33 E-value=1.6e-06 Score=92.23 Aligned_cols=141 Identities=11% Similarity=0.122 Sum_probs=90.9
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEeccccc-----CCCcccccccceEEecccccc-CCCccEEEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNF-----LSRKFDVSKFGVIIAGAQKNI-GPAGITVVIV 340 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~-----G~~pIDv~~~gvl~asaqK~l-GP~Glg~liv 340 (621)
.++++|.+-....+ -..|. |+++.|+++++|++.-. |..|=+++..|++.++.||.| ||.| |++..
T Consensus 179 ~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~tTHKtlrGPrg-GiI~~ 255 (470)
T d1rv3a_ 179 FHPKLIIAGTSCYS--RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFY 255 (470)
T ss_dssp HCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEE
T ss_pred hCcceEeechhhcc--ccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhheeeeeeeehhhhccCCcc-eEEEE
Confidence 46777776654443 22332 56688999999998754 334444555689999999999 8999 77776
Q ss_pred chhHHhhhCCCCCc--eeecccccc---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 341 REDLLEYALPITPT--VFHFKINAD---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 341 r~~ll~~~~~~~P~--~ld~~~~~~---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+++.-+. .+.... ..++....+ -+.+-+.|-...|++++.+++..... -.....++..+.++.|.+.|.+.+
T Consensus 256 ~~~~~~~-~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~-~fk~Ya~qvv~NAk~La~~L~~~G- 332 (470)
T d1rv3a_ 256 RRGVRSV-DPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP-EFKEYQRQVVANCRALSAALVELG- 332 (470)
T ss_dssp ECSBCC--------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccccccc-cccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 6653110 000000 011111111 13445678888999999999987653 247788888888999999998875
Q ss_pred ccc
Q psy8733 416 FYE 418 (621)
Q Consensus 416 ~~~ 418 (621)
+.+
T Consensus 333 ~~v 335 (470)
T d1rv3a_ 333 YKI 335 (470)
T ss_dssp CEE
T ss_pred cee
Confidence 544
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=2e-07 Score=95.60 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=118.0
Q ss_pred hhhHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCc-----e-eee--------eecccCCCccCCCchhHHHHHH
Q psy8733 446 AFFFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPT-----V-FHF--------KINADNNSVYNTPPTFVVHVIQ 510 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~-----~-~~y--------~~~~~~~s~~nTP~~~~iy~~~ 510 (621)
.+..|++++|+||.+ ||.|++++++|++++++..+..+. . .+. ......+++++|||+..||.+.
T Consensus 187 ~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~ 266 (382)
T d2bkwa1 187 EWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLD 266 (382)
T ss_dssp TTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHH
T ss_pred ccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHH
Confidence 345789999999999 699999999999999876543211 1 100 1123457899999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHhccCCcccc-cCCCC----------CcccHHHHHHHHHccCccccCCCC-
Q psy8733 511 RVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC-PVQAG----------FPLDELFLKEAKAHNMIQLKGHRL- 578 (621)
Q Consensus 511 ~vl~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~-~v~~~----------~~~~~~~~~~~~~~~i~~~~g~~~- 578 (621)
..|+|+.+.| ++...++.++.++.+++.+.+..++... +..++ ..-...+.+.++++||+...|++.
T Consensus 267 ~aL~~~~~~g-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~~~~~~~~L~~~gi~i~~G~~~~ 345 (382)
T d2bkwa1 267 VALKEILEEG-LHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKD 345 (382)
T ss_dssp HHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEECBCCCCTT
T ss_pred HHHHHHHHhh-hhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCCHHHHHHHHHHCCeEEECCCChh
Confidence 9999998876 6667777788899999888765432222 11111 012345788899999999988654
Q ss_pred C--Cccceeec-cCCCHHHHHHHHHHHHHHHHHcC
Q psy8733 579 V--GGIRASIY-NAITVDEAVILVKFMKEFRHKHS 610 (621)
Q Consensus 579 ~--~~~r~~~~-~a~~~~~~~~l~~~~~~~~~~~~ 610 (621)
. +.|||++| -..+.|+++.|+++|+.+...-.
T Consensus 346 ~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~ 380 (382)
T d2bkwa1 346 IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380 (382)
T ss_dssp TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4 44999975 22335779999999998887543
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=98.32 E-value=6.1e-06 Score=85.33 Aligned_cols=140 Identities=13% Similarity=0.100 Sum_probs=81.3
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCc---c------ccccc-c--eEEeccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK---F------DVSKF-G--VIIAGAQKN 329 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p---I------Dv~~~-g--vl~asaqK~ 329 (621)
..++++++.++.-.|.||...+. +++++++++|.|-+=+-.... . ..... + +++.|.-|.
T Consensus 172 ~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~ 251 (401)
T d7aata_ 172 IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKN 251 (401)
T ss_dssp SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTT
T ss_pred CCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEecccc
Confidence 46788999999999999999874 456899999999876544321 1 11111 2 677788888
Q ss_pred cCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH--HHHhh--CCHHHHHHHHHHHH
Q psy8733 330 IGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA--WIKRQ--GGLAKMEQNSLQKS 403 (621)
Q Consensus 330 lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~--~i~~~--gGl~~i~~r~~~la 403 (621)
++-+| +|.++...+..+....... .+ ... ....+..++.....++...++ .+.++ .-++.+.++.+++.
T Consensus 252 ~~~~G~RiG~~~~~~~~~~~~~~~~~-~~---~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 326 (401)
T d7aata_ 252 MGLYGERAGAFTVICRDAEEAKRVES-QL---KIL-IRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMR 326 (401)
T ss_dssp SCCGGGCEEEEEEECSSHHHHHHHHH-HH---HHH-HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeccccceeecchHHHHHHHHHHH-HH---HHH-hhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88666 6888888776654321000 00 000 011222233333333332222 11111 01456667777777
Q ss_pred HHHHHHHHccC
Q psy8733 404 VLLYQEIDNSD 414 (621)
Q Consensus 404 ~~L~e~L~~~~ 414 (621)
+.+.+.|++.+
T Consensus 327 ~~l~~~L~~~~ 337 (401)
T d7aata_ 327 TQLVSNLKKEG 337 (401)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 88888888764
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=2.7e-05 Score=79.74 Aligned_cols=130 Identities=9% Similarity=0.062 Sum_probs=78.7
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----cccc---ccc-c--eEEeccccccC
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----KFDV---SKF-G--VIIAGAQKNIG 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----pIDv---~~~-g--vl~asaqK~lG 331 (621)
..++++++.+++-.|.||+..+. +++.+++.++.|..-..... +... ... + +++.|.=|.++
T Consensus 156 ~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 235 (382)
T d1u08a_ 156 LSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH 235 (382)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT
T ss_pred hccCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeecccccc
Confidence 56789999999999999999874 23467888888876543221 1111 111 1 78888899998
Q ss_pred CCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQE 409 (621)
Q Consensus 332 P~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~ 409 (621)
.+| +|.++..+++++++.. . ......+++ .+.-.++..+++--.+ -+..+.++.+++.+.+.+.
T Consensus 236 ~pG~RiG~~v~~~~~~~~~~~-------~----~~~~~~~~~-~~~q~a~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~ 301 (382)
T d1u08a_ 236 MTGWKVGYCVAPAPISAEIRK-------V----HQYLTFSVN-TPAQLALADMLRAEPE--HYLALPDFYRQKRDILVNA 301 (382)
T ss_dssp CGGGCCEEEECCHHHHHHHHH-------H----HHHHTSSCC-HHHHHHHHHHHHHCTH--HHHTHHHHHHHHHHHHHHH
T ss_pred CCcccchhhhccchhHHHHHh-------h----hcccccccc-cccccccccccccchH--HHHHHHHHHHhhhhhhhhh
Confidence 666 7999999888765421 0 001122333 3334444444432111 2556666666677777666
Q ss_pred HHcc
Q psy8733 410 IDNS 413 (621)
Q Consensus 410 L~~~ 413 (621)
+...
T Consensus 302 ~~~~ 305 (382)
T d1u08a_ 302 LNES 305 (382)
T ss_dssp TTSS
T ss_pred hccC
Confidence 5543
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.24 E-value=9.5e-05 Score=78.04 Aligned_cols=146 Identities=11% Similarity=0.071 Sum_probs=91.8
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccccCCCcccccccc--eEEecccc-----ccCCCccEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVSKFG--VIIAGAQK-----NIGPAGITV 337 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~G~~pIDv~~~g--vl~asaqK-----~lGP~Glg~ 337 (621)
+++++..|.++.-+| .|+..++ +.+..|+++++|+--...+.--...++| +++..+|+ ++|-||.|+
T Consensus 193 ~~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~~q~fg~p~g~GGP~~G~ 271 (437)
T d1wyua1 193 VGEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGF 271 (437)
T ss_dssp CCTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSCCEE
T ss_pred hccceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeeccceeccccCCCcCcccc
Confidence 567888887666655 6988775 3357889888887655444444455555 88777554 334567899
Q ss_pred EEEchhHHhhhCCCCCc----------e-eecccc------ccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q psy8733 338 VIVREDLLEYALPITPT----------V-FHFKIN------ADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSL 400 (621)
Q Consensus 338 livr~~ll~~~~~~~P~----------~-ld~~~~------~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~ 400 (621)
+.+++++...+...... | +.+... .+..+...|-..........-+.++-.+ |+.++.++..
T Consensus 272 ~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~-GL~~ia~~a~ 350 (437)
T d1wyua1 272 LATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPE-GLREVALKSV 350 (437)
T ss_dssp EEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred ccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcc-cHHHHHHHHH
Confidence 99999987665432211 1 101110 0111222344333333334445555566 8999999999
Q ss_pred HHHHHHHHHHHccCCcc
Q psy8733 401 QKSVLLYQEIDNSDKFY 417 (621)
Q Consensus 401 ~la~~L~e~L~~~~g~~ 417 (621)
.++.++.+.|.+++|+.
T Consensus 351 ~~A~yl~~~L~~~~g~~ 367 (437)
T d1wyua1 351 EMAHKLHALLLEVPGVR 367 (437)
T ss_dssp HHHHHHHHHHTTSTTCE
T ss_pred HHHHHHHHHhhhcCCee
Confidence 99999999999887664
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=98.23 E-value=7.6e-06 Score=85.51 Aligned_cols=133 Identities=11% Similarity=0.115 Sum_probs=78.5
Q ss_pred CCCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCC----ccc-----------ccccc--eEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSR----KFD-----------VSKFG--VII 323 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~----pID-----------v~~~g--vl~ 323 (621)
+..++++++.+|+-.|.||...+. +++++++++|+|.+-+-... ... ....+ +++
T Consensus 184 ~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~ 263 (428)
T d1iaya_ 184 KSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIV 263 (428)
T ss_dssp HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEE
T ss_pred ccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEE
Confidence 356789999999999999998873 35689999999998653211 111 11112 667
Q ss_pred eccccccCCCc--cEEEEEchh-HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q psy8733 324 AGAQKNIGPAG--ITVVIVRED-LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSL 400 (621)
Q Consensus 324 asaqK~lGP~G--lg~livr~~-ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~ 400 (621)
.|.-|.++.+| +|.++..++ +.+.+.. ........++....+.+....-+++.+. ++...++.+
T Consensus 264 ~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~a~l~~~~~~~~~--~~~~~~~l~ 330 (428)
T d1iaya_ 264 YSLSKDMGLPGFRVGIIYSFNDDVVNCARK-----------MSSFGLVSTQTQYFLAAMLSDEKFVDNF--LRESAMRLG 330 (428)
T ss_dssp EESTTTSSCGGGCEEEEEESCHHHHHHHHH-----------HHTTSCCCHHHHHHHHHHTTCHHHHHHH--HHHHHHHHH
T ss_pred ecCCCcccCCCcccccccccccchhhhhhh-----------hhcccccccccccchhhhhhhhcccccc--ccccccccc
Confidence 78889998777 788877554 4332210 0001111222222222222222344332 556666677
Q ss_pred HHHHHHHHHHHccC
Q psy8733 401 QKSVLLYQEIDNSD 414 (621)
Q Consensus 401 ~la~~L~e~L~~~~ 414 (621)
++.+.+.+.|+..+
T Consensus 331 ~r~~~~~~~L~~~g 344 (428)
T d1iaya_ 331 KRHKHFTNGLEVVG 344 (428)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhCC
Confidence 77788888887653
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=2.3e-06 Score=89.77 Aligned_cols=268 Identities=13% Similarity=0.099 Sum_probs=152.6
Q ss_pred CceeccCCCCCCCHHHHHHHHHHHHhhccCCCcccccccccHHHHH-HHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhh
Q psy8733 51 PVINFGAGPAKLPREVLEEVKETLLDYESTGISVMEMSHRSADYTK-INNDTQAALRELLNVPNNYKILFLQGGGTGMFA 129 (621)
Q Consensus 51 ~~~lf~aGPs~~P~~Vlea~~~~l~~~~~~g~sv~e~shrs~~f~~-i~~~ar~~La~Ll~~p~~yeI~f~~gggT~~~~ 129 (621)
...++.|.-.-+++.|++++...+.+-...|..- +..+-+-++.+ +-.-+.++.++|||+.. +-.-+-||+.
T Consensus 27 ~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg-~Ryy~G~~~iD~iE~la~~ra~~lF~a~~---anVqp~SGs~--- 99 (416)
T d1dfoa_ 27 EHIELIASENYTSPRVMQAQGSQLTNKYAEGYPG-KRYYGGCEYVDIVEQLAIDRAKELFGADY---ANVQPHSGSQ--- 99 (416)
T ss_dssp HSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETT-EESSSCCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHH---
T ss_pred cCceEecCcccCCHHHHHHhcCcccCcccCCCCC-CcccCCChhHHHHHHHHHHHHHHHhCCCc---ceeecccCcc---
Confidence 4678899999999999999999887644444331 12222444444 44557789999999964 2223445666
Q ss_pred HHHHHHhhhccCCCCCceeEeecCCcchhHHHHHHHhhCCCCcEEEEEcChHHHHHHHHHHHhCCceeeecccccccccC
Q psy8733 130 AVAMNLISSSMNVPNNYKILFLQGGGTGMFAAVAMNLIGRTGKADYVVTGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIP 209 (621)
Q Consensus 130 a~alNlla~~~~~~~gd~Il~~~~~~~~~feav~~NL~~~g~~~~~v~tG~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~ 209 (621)
.|+.....=+++||.|+.... ..|.|..+-....++.+ .+..
T Consensus 100 ---AN~av~~All~pGD~Il~l~l--------------~~GGHlshg~~~~~~g~------~~~~--------------- 141 (416)
T d1dfoa_ 100 ---ANFAVYTALLEPGDTVLGMNL--------------AHGGHLTHGSPVNFSGK------LYNI--------------- 141 (416)
T ss_dssp ---HHHHHHHHHCCTTCEEEEECT--------------TTTCCGGGTCTTSHHHH------HSEE---------------
T ss_pred ---HHHHHHHHhcCCCCeeeeccc--------------cccccccccccccccCc------eEEE---------------
Confidence 344332222566666655431 22211111111111111 1100
Q ss_pred CCCCCCCCCCccccccccCccccCccchhhhHHHhhhcccccccccCCCccCCCCccccCCCCCceEEEEeccccccccc
Q psy8733 210 DQSTWNRDPEASYLYYCDNETVDGSWSKKAAAEAEKYGKVNLVIPKVSKYVSIPDQSTWNRDPEASYLYYCDNETVDGVE 289 (621)
Q Consensus 210 ~~~~~~~~~~v~~v~~~~~~~v~~~w~~~v~~e~~~~~~~~~~~~~~~~~~~ip~~~~l~i~~~t~~V~~thnET~tGv~ 289 (621)
++|. ++ .-..+|-++ .++.....++++|.+...-. .-.
T Consensus 142 -------------~~y~----~d--~~~~IDyd~---------------------l~~~a~~~kPklIi~G~S~y--~r~ 179 (416)
T d1dfoa_ 142 -------------VPYG----ID--ATGHIDYAD---------------------LEKQAKEHKPKMIIGGFSAY--SGV 179 (416)
T ss_dssp -------------EEEC----BC--SSSSBCHHH---------------------HHHHHHHHCCSEEEEECSSC--CSC
T ss_pred -------------Eecc----cC--CccCccHHH---------------------HHHHHHHhccceEEeccccc--ccc
Confidence 0000 00 000011111 11122334678887664333 333
Q ss_pred ccc-----ccccCCCcEEEecccccC-----CCcccccccceEEecccccc-CCCccEEEEEc---hhHHhhhCCCCCce
Q psy8733 290 FNY-----IPDSQGIPLVSDMSSNFL-----SRKFDVSKFGVIIAGAQKNI-GPAGITVVIVR---EDLLEYALPITPTV 355 (621)
Q Consensus 290 ~p~-----i~~~~g~llvvDavSs~G-----~~pIDv~~~gvl~asaqK~l-GP~Glg~livr---~~ll~~~~~~~P~~ 355 (621)
.|. |+++.|+++++|++.-.| ..|=++...|++.++.||.| ||.|- ++..+ +++.+++..
T Consensus 180 ~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrgg-iI~~~~~~~~~~~~i~~----- 253 (416)
T d1dfoa_ 180 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGG-LILAKGGSEELYKKLNS----- 253 (416)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSCE-EEEESSCCHHHHHHHHH-----
T ss_pred cCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccccceeeeehhhcccCCCce-EEEeccchHhHHHHHHh-----
Confidence 442 566889999999988653 34445555689999999999 79884 44443 344443311
Q ss_pred eeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCcccC
Q psy8733 356 FHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC 419 (621)
Q Consensus 356 ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~~~~ 419 (621)
.--+...+.|-...|++++.+|+...+. ......++..+.++.|.+.|.+.| |.+.
T Consensus 254 ------avfPg~qggp~~~~iaa~Aval~Ea~~~-~fk~Y~~qvv~NA~~La~~L~~~G-~~iv 309 (416)
T d1dfoa_ 254 ------AVFPGGQGGPLMHVIAGKAVALKEAMEP-EFKTYQQQVAKNAKAMVEVFLERG-YKVV 309 (416)
T ss_dssp ------HHTTTTCSSCCHHHHHHHHHHHHHTTSH-HHHHHHHHHHHHHHHHHHHHHHTT-CEEG
T ss_pred ------hhCcccccCccHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHhCC-cccc
Confidence 0013444567778899999999986554 457788888999999999998875 6543
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.03 E-value=4.3e-06 Score=85.90 Aligned_cols=81 Identities=10% Similarity=0.058 Sum_probs=59.3
Q ss_pred CCCCCceEEEEeccccccc-ccccc-----ccccCCCcEEEecccccCCCccccc----c--cceEEeccccccCCCccE
Q psy8733 269 NRDPEASYLYYCDNETVDG-VEFNY-----IPDSQGIPLVSDMSSNFLSRKFDVS----K--FGVIIAGAQKNIGPAGIT 336 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tG-v~~p~-----i~~~~g~llvvDavSs~G~~pIDv~----~--~gvl~asaqK~lGP~Glg 336 (621)
+++++|++|.+.+..+.++ ...++ +++++++++++|.+.+.+....+.. + .+++++|.+|.+|.+++|
T Consensus 129 ~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~~G 208 (366)
T d2aeua1 129 KIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGG 208 (366)
T ss_dssp TCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCE
T ss_pred hcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEeccccccccccee
Confidence 4678999999887655433 34443 4568999999999987543222211 2 349999999999877899
Q ss_pred EEEEchhHHhhhC
Q psy8733 337 VVIVREDLLEYAL 349 (621)
Q Consensus 337 ~livr~~ll~~~~ 349 (621)
+++.++++++++.
T Consensus 209 ~i~~~~~~i~~~~ 221 (366)
T d2aeua1 209 LLAGKKELVDKIY 221 (366)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEecHHHHHHHH
Confidence 9999999988763
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=97.98 E-value=1.2e-05 Score=85.21 Aligned_cols=142 Identities=10% Similarity=0.110 Sum_probs=90.4
Q ss_pred CCceEEEEecccccccccccc-----ccccCCCcEEEeccccc-----CCCcccccccceEEecccccc-CCCccEEEEE
Q psy8733 272 PEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSNF-----LSRKFDVSKFGVIIAGAQKNI-GPAGITVVIV 340 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs~-----G~~pIDv~~~gvl~asaqK~l-GP~Glg~liv 340 (621)
.++++|.+-....+ -..|. |+++.|+++++|++.-. |..|=++...|++.++.||.| ||.| |++..
T Consensus 175 ~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKTlrGPrg-GiIl~ 251 (463)
T d2a7va1 175 FRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS-GLIFY 251 (463)
T ss_dssp HCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSC-EEEEE
T ss_pred cCCceEEecccccc--cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhhhhhhchhhhhhcCCCc-eEEEE
Confidence 46777776654443 22232 56678999999998754 334444555689999999999 8997 45555
Q ss_pred chhHHhhhCCCCCc--eeecccccc---CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 341 REDLLEYALPITPT--VFHFKINAD---NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 341 r~~ll~~~~~~~P~--~ld~~~~~~---~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+++.... .+.... ..++....+ -+.+-+.|-...|++++.++....+. ......++..+.++.|.+.|.+.|
T Consensus 252 ~~~~~~~-~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~-~fk~Ya~qVv~NAk~La~~L~~~G- 328 (463)
T d2a7va1 252 RKGVKAV-DPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP-MFREYSLQVLKNARAMADALLERG- 328 (463)
T ss_dssp ECSEEEE-ETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccccccc-ccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 5443110 010000 001111111 13455678888999999999887654 367788888889999999998875
Q ss_pred cccC
Q psy8733 416 FYEC 419 (621)
Q Consensus 416 ~~~~ 419 (621)
+.+.
T Consensus 329 ~~vv 332 (463)
T d2a7va1 329 YSLV 332 (463)
T ss_dssp CEEG
T ss_pred Ceee
Confidence 5543
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=97.97 E-value=2.6e-05 Score=82.01 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=70.8
Q ss_pred ceEEEEeccccccccc-ccc--------ccccCCCcEEEecccccCCCcc------------------cccc-cceEEec
Q psy8733 274 ASYLYYCDNETVDGVE-FNY--------IPDSQGIPLVSDMSSNFLSRKF------------------DVSK-FGVIIAG 325 (621)
Q Consensus 274 t~~V~~thnET~tGv~-~p~--------i~~~~g~llvvDavSs~G~~pI------------------Dv~~-~gvl~as 325 (621)
+..+.+....+..|.. .+. +++++|+++++|+++..+.... |+-. .+++.+|
T Consensus 183 ~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s 262 (465)
T d1ax4a_ 183 IVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMS 262 (465)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEee
Confidence 4455555544544443 231 4578999999999987543211 1112 2488999
Q ss_pred cccccCCCccEEEEEchhHHh--hhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy8733 326 AQKNIGPAGITVVIVREDLLE--YALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKS 403 (621)
Q Consensus 326 aqK~lGP~Glg~livr~~ll~--~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la 403 (621)
.+|.++++|.|+++.+++... ......+ .......++.+....+.++... +.+. -.+...++..+.+
T Consensus 263 ~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~a~~~~---~~e~-~~~~~~~~~~~~~ 331 (465)
T d1ax4a_ 263 AKKDPLLNIGGLVAIRDNEEIFTLARQRCV-------PMEGFVTYGGLAGRDMAAMVQG---LEEG-TEEEYLHYRIGQV 331 (465)
T ss_dssp TTSTTCCSSCEEEEESSCHHHHHHHHHHHH-------HHTCSTTTTTCCHHHHHHHHHH---HHHT-TCHHHHHHHHHHH
T ss_pred cccCcccccceeEeecchHHHHHhhhcccc-------ccccCCCcchhhHHHHHHHhhh---hHHh-hhHHHHHHHHHHH
Confidence 999998888899999876421 1100000 0011122333333333322222 2222 2244455556667
Q ss_pred HHHHHHHHccC
Q psy8733 404 VLLYQEIDNSD 414 (621)
Q Consensus 404 ~~L~e~L~~~~ 414 (621)
++|++.|.+.+
T Consensus 332 ~~l~~~L~~~g 342 (465)
T d1ax4a_ 332 KYLGDRLREAG 342 (465)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhhc
Confidence 88999999875
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=97.95 E-value=3.9e-05 Score=79.34 Aligned_cols=138 Identities=11% Similarity=0.050 Sum_probs=82.2
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCc-c--------c-ccccc--eEEeccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRK-F--------D-VSKFG--VIIAGAQKN 329 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~p-I--------D-v~~~g--vl~asaqK~ 329 (621)
..++++++.+|.-.|.||...+. ++++++++++.|-+-.-...+ . . .+..+ +++.|.=|.
T Consensus 180 ~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~ 259 (412)
T d1ajsa_ 180 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKN 259 (412)
T ss_dssp SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTT
T ss_pred ccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccccccccccccc
Confidence 56788899998889999999883 456899999999876543221 0 0 11112 666677777
Q ss_pred cCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHH------HHHHhhCCHHHHHHHHHH
Q psy8733 330 IGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVF------AWIKRQGGLAKMEQNSLQ 401 (621)
Q Consensus 330 lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL------~~i~~~gGl~~i~~r~~~ 401 (621)
++-+| +|.+++..+..+.+..... .+. .-..+.+.+++.....++...+ ++..+. ++.+.++.++
T Consensus 260 ~~~~G~R~G~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 332 (412)
T d1ajsa_ 260 FGLYNERVGNLTVVAKEPDSILRVLS-QMQ----KIVRVTWSNPPAQGARIVARTLSDPELFHEWTGN--VKTMADRILS 332 (412)
T ss_dssp SCCGGGCEEEEEEECSSHHHHHHHHH-HHH----HHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHH--HHHHHHHHHH
T ss_pred ccCCCCCccccccchhHHHHHHHHHH-HHH----HHhhccccccchHHHHHHHHHhcCHHHHHHHHHH--HHHHHHHHHH
Confidence 77555 7888887665543321000 000 0012233344444444443333 233333 6677778888
Q ss_pred HHHHHHHHHHccC
Q psy8733 402 KSVLLYQEIDNSD 414 (621)
Q Consensus 402 la~~L~e~L~~~~ 414 (621)
+.+.+++.|++++
T Consensus 333 ~r~~l~~~L~~~~ 345 (412)
T d1ajsa_ 333 MRSELRARLEALK 345 (412)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888764
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=97.93 E-value=6.6e-05 Score=77.85 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=84.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCcc------------c-ccccc--eEEecc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKF------------D-VSKFG--VIIAGA 326 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pI------------D-v~~~g--vl~asa 326 (621)
..++++++.++...|.||+..+. ++++++++++.|-+-.-....- . .+..+ +++.|.
T Consensus 173 ~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 252 (412)
T d1yaaa_ 173 APEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF 252 (412)
T ss_dssp SCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred CCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEec
Confidence 44567888888889999999873 4568999999998765333210 0 11122 788899
Q ss_pred ccccCCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH------HHHhhCCHHHHHHH
Q psy8733 327 QKNIGPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA------WIKRQGGLAKMEQN 398 (621)
Q Consensus 327 qK~lGP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~------~i~~~gGl~~i~~r 398 (621)
=|.+|.+| +|.+++..+..+.+..... .++.....-...++..+|...-.+...+++ ...+. ++.+.++
T Consensus 253 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~--~~~~~~~ 329 (412)
T d1yaaa_ 253 AKNAGMYGERVGCFHLALTKQAQNKTIKP-AVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKD--MVTMSSR 329 (412)
T ss_dssp TTTSCCGGGCEEEEEEECCSCTTHHHHHH-HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH--HHHHHHH
T ss_pred CCccccCcCceEEEEEchhhhhhHHHHHH-HHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHH--HHHHHHH
Confidence 99999888 8899888766432211000 000000000112333444444444333332 12222 5777778
Q ss_pred HHHHHHHHHHHHHccC
Q psy8733 399 SLQKSVLLYQEIDNSD 414 (621)
Q Consensus 399 ~~~la~~L~e~L~~~~ 414 (621)
.+++.+.+++.|.+++
T Consensus 330 ~~~~r~~l~~~L~~~g 345 (412)
T d1yaaa_ 330 ITKMRHALRDHLVKLG 345 (412)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8888888888888764
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=97.91 E-value=0.00081 Score=71.37 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=87.6
Q ss_pred CCCCceEEEEeccccccccccc-c-----ccccCCCcEEEecccccCCC-cccccccc--eEEeccccccC-C-----Cc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFN-Y-----IPDSQGIPLVSDMSSNFLSR-KFDVSKFG--VIIAGAQKNIG-P-----AG 334 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p-~-----i~~~~g~llvvDavSs~G~~-pIDv~~~g--vl~asaqK~lG-P-----~G 334 (621)
.+.++..+.++...+. |...+ . +.++.+..+++|.+...... ......++ .++.+.|+.+| | ||
T Consensus 199 ~~~~~a~v~v~~p~~~-g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~ 277 (471)
T d1wyub1 199 LGPHVAALMLTNPNTL-GLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPG 277 (471)
T ss_dssp CSTTEEEEEECSSCTT-SCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCC
T ss_pred hhccccceeeccCCCc-ccccchhhhhHHHHHhccccccccccchhhhhhccccCccccccccccccccccccccccccc
Confidence 4566777776666665 54443 2 23456777788765433322 22223332 77788898775 4 78
Q ss_pred cEEEEEchhHHhhhCCCC-----Ccee-ecccccc-CCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q psy8733 335 ITVVIVREDLLEYALPIT-----PTVF-HFKINAD-NNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLY 407 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~-----P~~l-d~~~~~~-~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~ 407 (621)
+|++.+++++..++.-.. ..+. .+...+. .+....|-......+...-+.++-.+ |+.++.+++..++.++.
T Consensus 278 ~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~-GL~elA~~~~~~A~Yla 356 (471)
T d1wyub1 278 SGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLE-GLKKAAALAVLNARYLK 356 (471)
T ss_dssp CCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred ccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHHHH
Confidence 999999999976653210 1111 1111110 11222344444344444566777777 89999999999999999
Q ss_pred HHHHccCCccc
Q psy8733 408 QEIDNSDKFYE 418 (621)
Q Consensus 408 e~L~~~~g~~~ 418 (621)
+.|+. +|+.+
T Consensus 357 ~~L~~-~G~~~ 366 (471)
T d1wyub1 357 ELLKE-KGYRV 366 (471)
T ss_dssp HHHHH-TTCBC
T ss_pred HHHhh-cCcee
Confidence 99976 45543
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=97.83 E-value=0.00026 Score=72.26 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=76.7
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCcc---------cc-cccc-eEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKF---------DV-SKFG-VIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pI---------Dv-~~~g-vl~asaqK~l 330 (621)
..++++++.++.-.|.||...+. ++++++++++.|-+-.-....- .. +... +++.|.-|.+
T Consensus 166 ~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~ 245 (394)
T d2ay1a_ 166 AKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNF 245 (394)
T ss_dssp CCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTT
T ss_pred cccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccc
Confidence 45667888888888999999884 4568899999998765443211 01 1112 6666777888
Q ss_pred CCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH------HHHhhCCHHHHHHHHHHH
Q psy8733 331 GPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA------WIKRQGGLAKMEQNSLQK 402 (621)
Q Consensus 331 GP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~------~i~~~gGl~~i~~r~~~l 402 (621)
+-+| +|.+.+.....+....... ..... .......++..........+. ...+. ++.+.++..++
T Consensus 246 ~~~G~R~G~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~ 318 (394)
T d2ay1a_ 246 GIYRERTGCLLALCADAATRELAQG----AMAFL-NRQTYSFPPFHGAKIVSTVLTTPELRADWMAE--LEAVRSGMLRL 318 (394)
T ss_dssp TCGGGCEEEEEEECSSHHHHHHHHH----HHHHH-HHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHH--HHHHHHHHHHH
T ss_pred cCCcccccchhhchhHHHHHHHhhh----hhHhh-hcccccchhHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHHHHH
Confidence 6555 6777777665543321000 00000 011222222222222222221 12222 56777788888
Q ss_pred HHHHHHHHHccC
Q psy8733 403 SVLLYQEIDNSD 414 (621)
Q Consensus 403 a~~L~e~L~~~~ 414 (621)
.+.+++.|.+++
T Consensus 319 r~~l~~~L~~~~ 330 (394)
T d2ay1a_ 319 REQLAGELRDLS 330 (394)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 888888887754
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=97.78 E-value=0.0001 Score=76.67 Aligned_cols=130 Identities=12% Similarity=0.148 Sum_probs=88.2
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecccc--cCCCcccccccceEEeccccccCC---CccEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSSN--FLSRKFDVSKFGVIIAGAQKNIGP---AGITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavSs--~G~~pIDv~~~gvl~asaqK~lGP---~Glg~li 339 (621)
++++|++|++=.-.|.+.-+.|+ +++++|++++||.+-+ +...|+++- .|+++-|+-|++|- .=.|+++
T Consensus 141 i~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~G-aDivihS~TKyi~Ghsd~~~G~v~ 219 (392)
T d1gc0a_ 141 MTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELG-ADLVVHSATKYLSGHGDITAGIVV 219 (392)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGT-CSEEEEETTTTTTCSSSCCCEEEE
T ss_pred CCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccccChHHhC-CCEEEEecceeecCCccccccccc
Confidence 67899999998888888888886 5678999999999754 456777652 35999999999942 2367788
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+++.+++.+- ..... ..-.+++....+.+...++ -++-+.+++.+.+..|-+.|++.+.+
T Consensus 220 ~~~~~~~~~r~--------~~~~~--~~G~~~~p~da~ll~rgl~------TL~lRm~~~~~nA~~lA~~L~~hp~V 280 (392)
T d1gc0a_ 220 GSQALVDRIRL--------QGLKD--MTGAVLSPHDAALLMRGIK------TLNLRMDRHCANAQVLAEFLARQPQV 280 (392)
T ss_dssp ECHHHHHHHHH--------THHHH--HTCCCCCHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred chhHHHHHHHH--------HHHHH--ccCCcCChhhHHHHHhccc------cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88877654310 00000 1123444455554444433 35666777888888888999887743
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=97.72 E-value=0.00095 Score=67.62 Aligned_cols=131 Identities=13% Similarity=0.148 Sum_probs=86.6
Q ss_pred CCCCCceEEEEecccccccccccc-----c-cccCCCcEEEecc--cccCCCcccccccceEEecccccc-C--CCccEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY-----I-PDSQGIPLVSDMS--SNFLSRKFDVSKFGVIIAGAQKNI-G--PAGITV 337 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~-----i-~~~~g~llvvDav--Ss~G~~pIDv~~~gvl~asaqK~l-G--P~Glg~ 337 (621)
.+++++++|++-...|.+....|+ + ++.+|+++|||-+ +-+...|++.. .|+++.|.-|++ | -.=.|.
T Consensus 79 ~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~G-aDiVv~S~TKy~~Gh~d~~~G~ 157 (331)
T d1pffa_ 79 HLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLG-VDIVVHSATKYINGHTDVVAGL 157 (331)
T ss_dssp TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGT-CSEEEEETTTTTSSSSSCCCEE
T ss_pred hcccccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccccC-CCEEEecchhhcCCCCcccccc
Confidence 467899999999988988888775 2 3568999999965 33566777764 369999999999 4 333577
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++.+++.+.+.... .-....-.++..+..+.+...++- ++.+.+++.+.+..+-+.|++.+.+
T Consensus 158 v~~~~~~~~~~~~~----------~~~~~~G~~l~p~~a~ll~rgl~T------l~~Rm~~~~~nA~~lA~~L~~hp~V 220 (331)
T d1pffa_ 158 VCSRADIIAKVKSQ----------GIKDITGAIISPHDAWLITRGTLT------LDMRVKRAAENAQKVAEFLHEHKAV 220 (331)
T ss_dssp EEECHHHHHHHHHT----------CCCCCCCCCCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccccchhhhhhh----------hhhhccCCCCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhCCcE
Confidence 77877765432100 000112234555555555445443 4455667777788888888887743
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=97.67 E-value=0.00064 Score=70.64 Aligned_cols=130 Identities=14% Similarity=0.170 Sum_probs=85.9
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEeccc--ccCCCcccccccceEEecccccc-C--CCccEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSS--NFLSRKFDVSKFGVIIAGAQKNI-G--PAGITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavS--s~G~~pIDv~~~gvl~asaqK~l-G--P~Glg~li 339 (621)
++++|++|++=.-.|++.-+.|+ +++++|++++||.+= -+...|++.- .|+++-|+-|.+ | -.=.|+++
T Consensus 145 i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~G-aDivihS~TKyi~Ghsdvl~G~v~ 223 (397)
T d1y4ia1 145 MRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLG-ADIVVHSVTKYINGHGDVIGGIIV 223 (397)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGT-CSEEEEETTTTTTCSSCCCCEEEE
T ss_pred cCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCcchhcC-CCEEEEehhhhcCCCcceeeeccC
Confidence 67899999877767776777775 456899999999983 3556666652 359999999999 4 33367888
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+++.+++.+ +..... ..-.+++.+..+.+...|+ -++-+.+++.+.+..|-+.|++.+.+
T Consensus 224 ~~~~~~~~~r--------~~~~~~--~~G~~l~p~~a~l~~rgl~------TL~lRm~~~~~nA~~lA~~L~~hp~V 284 (397)
T d1y4ia1 224 GKQEFIDQAR--------FVGLKD--ITGGCMSPFNAWLTLRGVK------TLGIRMERHCENALKIARFLEGHPSI 284 (397)
T ss_dssp ECHHHHHHHH--------HTHHHH--TTCCCCCHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred CCHHHHHHHH--------HHHHHh--CcCCcCCHHHHHHHHcCcC------cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8887765431 000000 1123444444444333333 35667788888888999999988743
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.59 E-value=2.6e-05 Score=78.25 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=79.2
Q ss_pred hhHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCce------eeeeecccCCCccCCCchhHHHHHHHHHHHHHhc
Q psy8733 447 FFFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPTV------FHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQ 519 (621)
Q Consensus 447 ~~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~~------~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~ 519 (621)
...|.+.+|+||.+ ||.|++++++|++++++..+..+.. ..+..........+||+++.++.+...++|+.+.
T Consensus 178 ~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 257 (361)
T d1m32a_ 178 LHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKE 257 (361)
T ss_dssp TTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHh
Confidence 34678889999999 5999999999999998865543221 1011123446678999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccC
Q psy8733 520 GGLAKMEQNSLQKSVLLYQEIDNSD 544 (621)
Q Consensus 520 gg~~~~~~~~~~ka~~lY~~id~~~ 544 (621)
|+.+.+.++.++.++.+++.++...
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~g 282 (361)
T d1m32a_ 258 GGVAARHQRYQQNQRSLVAGMRALG 282 (361)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhhHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999997654
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=97.54 E-value=3.8e-05 Score=77.55 Aligned_cols=99 Identities=44% Similarity=0.799 Sum_probs=84.2
Q ss_pred hhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 447 FFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 447 ~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
.+.|+.|++.||++||.|...+++..+.+.+..+..+...+|....+..+.++||++-.++.++..+.|....|+...+.
T Consensus 185 ~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (361)
T d2c0ra1 185 NQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQ 264 (361)
T ss_dssp GGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ccceeEEEecccccccccCcEEEEEhHHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHH
Confidence 34788999999999977655555555655566666777777888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCC
Q psy8733 527 QNSLQKSVLLYQEIDNSDK 545 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~~ 545 (621)
++.++++..++.+......
T Consensus 265 ~~~~~~~~~~~~~~~~~~~ 283 (361)
T d2c0ra1 265 QANRKKASLIYDAIDQSGG 283 (361)
T ss_dssp HHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhhhhhhhccc
Confidence 9999999999999987653
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=97.47 E-value=8.4e-05 Score=78.68 Aligned_cols=129 Identities=9% Similarity=0.102 Sum_probs=73.9
Q ss_pred ceEEEEecccccc-cccccc--------ccccCCCcEEEecccccCCCc-----------ccc--------cccceEEec
Q psy8733 274 ASYLYYCDNETVD-GVEFNY--------IPDSQGIPLVSDMSSNFLSRK-----------FDV--------SKFGVIIAG 325 (621)
Q Consensus 274 t~~V~~thnET~t-Gv~~p~--------i~~~~g~llvvDavSs~G~~p-----------IDv--------~~~gvl~as 325 (621)
+.++.+..-.+.. |...++ +++++|+++++|+++.++... .++ +..|++++|
T Consensus 175 ~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s 254 (456)
T d1c7ga_ 175 IAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMS 254 (456)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEE
T ss_pred ceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEe
Confidence 4455555444443 444442 457899999999998765321 111 123589999
Q ss_pred cccccC-CCccEEEEEchhH-HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q psy8733 326 AQKNIG-PAGITVVIVREDL-LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKS 403 (621)
Q Consensus 326 aqK~lG-P~Glg~livr~~l-l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la 403 (621)
++|.++ |-| |+++.+++. .++++.. .........++.++...+.++...+.... +.+.+..+ .+.+
T Consensus 255 ~~K~~~~~~G-G~i~~~~~~l~~~~r~~-------~~~~~g~~~~g~~~~~~~~a~a~~l~e~~---~~~~l~~r-~~~~ 322 (456)
T d1c7ga_ 255 GKKDCLVNIG-GFLCMNDEEMFSAAKEL-------VVVYEGMPSYGGLAGRDMEAMAIGLREAM---QYEYIEHR-VKQV 322 (456)
T ss_dssp TTTTTCCSSC-EEEEESCHHHHHHHHHH-------HHHHTCCTTTTTCCHHHHHHHHHHHHHHT---CHHHHHHH-HHHH
T ss_pred ccccccccce-eEEEcCCHHHHHHHHHh-------ccccCCCcccchhhHHHHHHHHHHHHHhc---CHHHHHHH-HHHH
Confidence 999997 555 777777554 3433211 00111223345555555666555555432 33444333 4556
Q ss_pred HHHHHHHHccC
Q psy8733 404 VLLYQEIDNSD 414 (621)
Q Consensus 404 ~~L~e~L~~~~ 414 (621)
++|.+.|.+.+
T Consensus 323 ~~L~e~L~~~g 333 (456)
T d1c7ga_ 323 RYLGDKLREAG 333 (456)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcc
Confidence 78889998875
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=97.40 E-value=0.0039 Score=64.96 Aligned_cols=132 Identities=16% Similarity=0.197 Sum_probs=77.8
Q ss_pred CCCCceEEEEeccccccccccccccccCCCcEEEecccccCCCccccc-ccc--eEEeccccccCCCc--cEEEEEchhH
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNYIPDSQGIPLVSDMSSNFLSRKFDVS-KFG--VIIAGAQKNIGPAG--ITVVIVREDL 344 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~i~~~~g~llvvDavSs~G~~pIDv~-~~g--vl~asaqK~lGP~G--lg~livr~~l 344 (621)
++++++++.+|+=.|+||.+...+ .+++.+|.|-+=.-.+ -.++. ..+ +++.|-=|.+|-+| +|.++++++.
T Consensus 193 ~~~~~~ii~l~sPnNPtG~l~~~v--~~~~~~I~DEaY~~~~-f~~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~ 269 (425)
T d2hoxa1 193 SNPEQYIEMVTSPNNPEGLLRHAV--IKGCKSIYDMVYYWPH-YTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDES 269 (425)
T ss_dssp SCGGGEEEEEESSCTTTCCCCCCS--STTCEEEEECTTCSTT-TSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHH
T ss_pred CCCCceEEEEECCCCCCcchhhhh--hhCCEEEEeccccCcc-ccchhhhcCCeEEEEeCHHhccCcchheeeEEeCCHH
Confidence 567899999999999999875432 3578888887642211 11222 222 88888999999888 7887787654
Q ss_pred H-hhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH----HHHhh-C----CHHHHHHHHHHHHHHHHHHHHccC
Q psy8733 345 L-EYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA----WIKRQ-G----GLAKMEQNSLQKSVLLYQEIDNSD 414 (621)
Q Consensus 345 l-~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~----~i~~~-g----Gl~~i~~r~~~la~~L~e~L~~~~ 414 (621)
+ +++.. +.. ... .+++...-++..++|+ ++... + -.+...++.+++.+.+++.|.+++
T Consensus 270 i~~~~~~-------~~~----~~~-~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~ 337 (425)
T d2hoxa1 270 VYNNLLN-------YMT----KNT-EGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSD 337 (425)
T ss_dssp HHHHHHH-------HHH----HHT-SSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHH-------hhc----cCc-ccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3 43321 000 011 2233333334334443 33221 0 144555666667778888888877
Q ss_pred Cc
Q psy8733 415 KF 416 (621)
Q Consensus 415 g~ 416 (621)
++
T Consensus 338 ~~ 339 (425)
T d2hoxa1 338 RF 339 (425)
T ss_dssp SE
T ss_pred Cc
Confidence 44
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=97.38 E-value=7.4e-05 Score=75.20 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=111.8
Q ss_pred hhhHHHHHhhccccc-ccCCcEEeeecHhHhhhcCCCCCc-------eeeeeecccCCCccCCCchhHHHHHHHHHHHHH
Q psy8733 446 AFFFGVIIAGAQKNI-GPAGITVVIVREDLLEYALPITPT-------VFHFKINADNNSVYNTPPTFVVHVIQRVFAWIK 517 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~-GpaGl~v~iv~~~~l~~~~~~~p~-------~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~ 517 (621)
....|++++|+||.+ ||.|++++++++++++...+..+. ...+.........++||+.+..+..-..+.|..
T Consensus 193 ~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (377)
T d1vjoa_ 193 AWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLI 272 (377)
T ss_dssp TTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH
T ss_pred ccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhh
Confidence 445788999999987 599999999999999864332111 111122233344455555555555555666666
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCCC------------Cc-ccHHHHHHH-HHccCccccCCCCCC--c
Q psy8733 518 RQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAG------------FP-LDELFLKEA-KAHNMIQLKGHRLVG--G 581 (621)
Q Consensus 518 ~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~------------~~-~~~~~~~~~-~~~~i~~~~g~~~~~--~ 581 (621)
+.+|++.++++.+++++.+|+.++... + ..+++++ +. ..++|.+.+ +++||+...||+..+ .
T Consensus 273 ~~~g~~~~~~~~~~~~~~l~~~l~~~~-~-~~~~~~~~rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~ 350 (377)
T d1vjoa_ 273 AQEGLANCWQRHQKNVEYLWERLEDIG-L-SLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKV 350 (377)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHTT-C-CBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTE
T ss_pred hhcCchHHHHHHHHHhhhhhhhhhccC-c-eeecChHhcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCcccccCCE
Confidence 778999999999999999999998754 2 2222221 12 345676665 677999999999843 4
Q ss_pred cceeeccCC-CHHHHHHHHHHHHHHH
Q psy8733 582 IRASIYNAI-TVDEAVILVKFMKEFR 606 (621)
Q Consensus 582 ~r~~~~~a~-~~~~~~~l~~~~~~~~ 606 (621)
||||+|... +.||+++|+++|+++.
T Consensus 351 ~Ris~~g~~~t~edi~~lv~al~~~l 376 (377)
T d1vjoa_ 351 WRVGLMGFNSRKESVDQLIPALEQVL 376 (377)
T ss_dssp EEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEEecCcCCCCHHHHHHHHHHHHHHh
Confidence 999986543 6899999999999875
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=97.31 E-value=0.0095 Score=61.46 Aligned_cols=131 Identities=13% Similarity=0.199 Sum_probs=86.8
Q ss_pred CCCCCceEEEEecccccccccccc--cc----ccCCCcEEEecc--cccCCCcccccccceEEecccccc-C--CCccEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY--IP----DSQGIPLVSDMS--SNFLSRKFDVSKFGVIIAGAQKNI-G--PAGITV 337 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~--i~----~~~g~llvvDav--Ss~G~~pIDv~~~gvl~asaqK~l-G--P~Glg~ 337 (621)
.+++++++|++-.-.|.+.-+.|+ +. +.+|+++|||-+ +-+...|+++-. |+++-|+-|++ | =.=.|+
T Consensus 140 ~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~Ga-DiVvhS~TKy~~GhsDv~~G~ 218 (394)
T d1e5ea_ 140 HMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGV-DVVVHSATKYINGHTDVVAGL 218 (394)
T ss_dssp HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTC-SEEEEETTTTTTCSSCCCCEE
T ss_pred hhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccCCchhcCC-CEEEechhhhcCCCccccccc
Confidence 477899999988888888888775 21 357899999976 455667776532 59999999999 4 223577
Q ss_pred EEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 338 VIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 338 livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
++.+++.+.+.+.. .+ ....-.+++.+..+-+...|+ .++-+.+++.+.+..+-+.|++.+.+
T Consensus 219 v~~~~~~~~~~~~~-----~~-----~~~~G~~lsp~~a~ll~rgl~------TL~lRm~r~~~nA~~lA~~L~~hp~V 281 (394)
T d1e5ea_ 219 ICGKADLLQQIRMV-----GI-----KDITGSVISPHDAWLITRGLS------TLNIRMKAESENAMKVAEYLKSHPAV 281 (394)
T ss_dssp EEECHHHHHHHHHT-----CC-----CCCCCCCCCHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred ccchhhHHHHHHHH-----HH-----HHhhCCCCChHHHHHHHhhch------hHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 88888776543110 00 011223555555554444433 35667778888888899999988743
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.0016 Score=66.34 Aligned_cols=138 Identities=13% Similarity=0.170 Sum_probs=85.1
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCcc---------cccccc--eEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKF---------DVSKFG--VIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pI---------Dv~~~g--vl~asaqK~l 330 (621)
..++++++.++.-.|.||...+. +++++++++|.|-+=+-....- ..+..+ +++.|.=|.+
T Consensus 169 ~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~ 248 (396)
T d2q7wa1 169 AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNF 248 (396)
T ss_dssp CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT
T ss_pred hccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccc
Confidence 45678888888888999999874 4568999999998765333210 011112 7777788888
Q ss_pred CCCc--cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHH------HHHhhCCHHHHHHHHHHH
Q psy8733 331 GPAG--ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFA------WIKRQGGLAKMEQNSLQK 402 (621)
Q Consensus 331 GP~G--lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~------~i~~~gGl~~i~~r~~~l 402 (621)
+-+| +|.++......+........ ......+.+.+++.....++...+. ...+. ++.+.++.+++
T Consensus 249 ~~~G~R~G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 321 (396)
T d2q7wa1 249 GLYNERVGACTLVAADSETVDRAFSQ-----MKAAIRANYSNPPAHGASVVATILSNDALRAIWEQE--LTDMRQRIQRM 321 (396)
T ss_dssp TCGGGCCEEEEEECSSHHHHHHHHHH-----HHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHH--HHHC-CHHHHH
T ss_pred cccCCCccccccchhHHHHHHHhhhh-----hhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHH--HHHHHHHHHHH
Confidence 8777 88888887765543210000 0001123444555555444444332 12232 67778888888
Q ss_pred HHHHHHHHHccC
Q psy8733 403 SVLLYQEIDNSD 414 (621)
Q Consensus 403 a~~L~e~L~~~~ 414 (621)
.+.+++.|++++
T Consensus 322 r~~l~~~L~~~~ 333 (396)
T d2q7wa1 322 RQLFVNTLQEKG 333 (396)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 999999998875
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.22 E-value=0.0017 Score=67.02 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=86.0
Q ss_pred CCCCCceEEEEecccccccccccc-----ccccCCCcEEEecc--cccCCCcccccccceEEecccccc-C--CCccEEE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMS--SNFLSRKFDVSKFGVIIAGAQKNI-G--PAGITVV 338 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDav--Ss~G~~pIDv~~~gvl~asaqK~l-G--P~Glg~l 338 (621)
.+++++++|++=.-.|.+.-..|+ +++++|+++|||-+ +-+...|++.- .|+++-|.-|++ | -.-.|.+
T Consensus 129 ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~~G-aDiVvhS~TKyi~GhsDv~~G~v 207 (380)
T d1ibja_ 129 AIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELG-ADIVMHSATKFIAGHSDVMAGVL 207 (380)
T ss_dssp HCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTT-CSEEEEETTTTTTCSSCCCCEEE
T ss_pred HhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccccccccccC-CCEEEecccceeccccCcccccc
Confidence 367899999887777777777776 45689999999998 44667777653 469999999999 4 3346677
Q ss_pred EEchhH-HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 339 IVREDL-LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 339 ivr~~l-l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+++++. ++++.. +. ...-.+++.+..+.+...++ -++-+.+++.+.+..+-+.|++.+.
T Consensus 208 ~~~~~~~~~~~~~-------~~-----~~~G~~l~p~~a~ll~rgl~------Tl~lRm~~~~~nA~~lA~~L~~hp~ 267 (380)
T d1ibja_ 208 AVKGEKLAKEVYF-------LQ-----NSEGSGLAPFDCWLCLRGIK------TMALRIEKQQENARKIAMYLSSHPR 267 (380)
T ss_dssp EECSHHHHHHHHH-------HH-----HHTTCBCCHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ccchhhHHHHHHh-------hc-----cccCCcCCHHHHHHHHhcch------hhhhhHHHHHHHHHHHHHHHHhCCC
Confidence 777553 333210 00 01123444555544444433 3666777888888889999998773
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.023 Score=58.62 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=73.9
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEeccccc-CC--Ccccccccc----eEEecccccc--CCCc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNF-LS--RKFDVSKFG----VIIAGAQKNI--GPAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~-G~--~pIDv~~~g----vl~asaqK~l--GP~G 334 (621)
+..+|.+-......|+..+- +++++|+++|+|=+++- |- ...-.+.+| +++.| |.+ |-|
T Consensus 198 ~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P- 274 (425)
T d1sffa_ 198 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFP- 274 (425)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSC-
T ss_pred ceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecc--cccCCCcc-
Confidence 45556554444455766652 45689999999999983 32 111223343 66655 888 343
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+|.+++++++.+...+ . ..+++|+.- ..+..+..++|+.+.+. . +.++..++.+++.+.+.+
T Consensus 275 ~~av~~~~~i~~~~~~---~--------~~~~T~~gn-pl~~aaa~a~L~~i~~~-~---~~~~~~~~g~~l~~~l~~ 336 (425)
T d1sffa_ 275 LAGVTGRAEVMDAVAP---G--------GLGGTYAGN-PIACVAALEVLKVFEQE-N---LLQKANDLGQKLKDGLLA 336 (425)
T ss_dssp CEEEEEEHHHHTTSCT---T--------SBCCSSSSC-HHHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcHHHHHhhCC---C--------CCCCCCCcC-HHHHHHHHHHHHHHHHh-h---hhhhhhhhhhhhhhhhhh
Confidence 8999999998765432 1 124566443 35567777899999876 3 344445555555555544
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00038 Score=70.36 Aligned_cols=164 Identities=10% Similarity=0.084 Sum_probs=120.6
Q ss_pred hhhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCC----Cceeeee------e-cccCCCccCCCchhHHHHHHHHH
Q psy8733 446 AFFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPIT----PTVFHFK------I-NADNNSVYNTPPTFVVHVIQRVF 513 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~----p~~~~y~------~-~~~~~s~~nTP~~~~iy~~~~vl 513 (621)
....|++++|+||.+| |.|++++++++++++...+.. +..+++. . .........||++..++.+...+
T Consensus 194 ~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al 273 (388)
T d1h0ca_ 194 RQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESL 273 (388)
T ss_dssp TTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHH
T ss_pred ccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHH
Confidence 3457889999999996 999999999999998754331 2222211 1 12234556789999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCCC------------Cc-ccHHHHHHH-HHccCccccCCCC-
Q psy8733 514 AWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQAG------------FP-LDELFLKEA-KAHNMIQLKGHRL- 578 (621)
Q Consensus 514 ~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~~------------~~-~~~~~~~~~-~~~~i~~~~g~~~- 578 (621)
+++++ +|++.++++.+++++.+|+.++... ++....+++ +. -.++|.+.+ +++||....|++.
T Consensus 274 ~~~~~-~g~~~~~~~~~~l~~~l~~~~~~~g-~~~~~~~~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~ 351 (388)
T d1h0ca_ 274 ALIAE-QGLENSWRQHREAAAYLHGRLQALG-LQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPS 351 (388)
T ss_dssp HHHHH-HCHHHHHHHHHHHHHHHHHHHHHHT-CCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG
T ss_pred HHHHH-hccccccccccchhHHHHHHHhhcC-cccccCCHHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCchhh
Confidence 88875 5699999999999999999998764 333222221 11 235576666 4559998888865
Q ss_pred -CCccceeec-cCCCHHHHHHHHHHHHHHHHHcCC
Q psy8733 579 -VGGIRASIY-NAITVDEAVILVKFMKEFRHKHSR 611 (621)
Q Consensus 579 -~~~~r~~~~-~a~~~~~~~~l~~~~~~~~~~~~~ 611 (621)
.+.||||+| ...+.||++.|++.|+++-++-++
T Consensus 352 ~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k 386 (388)
T d1h0ca_ 352 TGKVLRIGLLGCNATRENVDRVTEALRAALQHCPK 386 (388)
T ss_dssp TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 456999987 567899999999999999887655
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.0012 Score=69.07 Aligned_cols=134 Identities=10% Similarity=0.022 Sum_probs=72.9
Q ss_pred ceEEEEecccccc-cccccc--------ccccCCCcEEEecccccCCCcc--------------c-----ccccceEEec
Q psy8733 274 ASYLYYCDNETVD-GVEFNY--------IPDSQGIPLVSDMSSNFLSRKF--------------D-----VSKFGVIIAG 325 (621)
Q Consensus 274 t~~V~~thnET~t-Gv~~p~--------i~~~~g~llvvDavSs~G~~pI--------------D-----v~~~gvl~as 325 (621)
++++.+....+.. |...|. +++++|+++++|+++.++.... + +...+++.+|
T Consensus 184 ~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s 263 (467)
T d2v1pa1 184 VPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMS 263 (467)
T ss_dssp CCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEE
T ss_pred cceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEec
Confidence 4555554444433 444442 4678999999999987653211 1 1234589999
Q ss_pred cccccCCCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Q psy8733 326 AQKNIGPAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVL 405 (621)
Q Consensus 326 aqK~lGP~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~ 405 (621)
.||.++.++-|++..+++.+........ ...........+...+...+.++...+... ..+...++..+.+++
T Consensus 264 ~~K~~~~~~gg~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~ 336 (467)
T d2v1pa1 264 AKKDAMVPMGGLLCMKDDSFFDVYTECR---TLCVVQEGFPTYGGLEGGAMERLAVGLYDG----MNLDWLAYRIAQVQY 336 (467)
T ss_dssp SSSTTCCSSCEEEEECSGGGHHHHHHHH---HHHHHTTSSCCCCCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceeEEecchhhhhHHHhhc---ccccccccCcchhhhHHHHHHHHHHHhHHh----hhHHHHHHHHHHHHH
Confidence 9999975556777777665432110000 000001112223333334444433333322 224555566778889
Q ss_pred HHHHHHccC
Q psy8733 406 LYQEIDNSD 414 (621)
Q Consensus 406 L~e~L~~~~ 414 (621)
|.+.|.+.+
T Consensus 337 l~~~L~~~~ 345 (467)
T d2v1pa1 337 LVDGLEEIG 345 (467)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 999998865
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.0063 Score=62.79 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=83.7
Q ss_pred CCCCCceEEEEecccccccccccc--c---cc--cCCCcEEEecc--cccCCCcccccccceEEecccccc-C--CCccE
Q psy8733 269 NRDPEASYLYYCDNETVDGVEFNY--I---PD--SQGIPLVSDMS--SNFLSRKFDVSKFGVIIAGAQKNI-G--PAGIT 336 (621)
Q Consensus 269 ~i~~~t~~V~~thnET~tGv~~p~--i---~~--~~g~llvvDav--Ss~G~~pIDv~~~gvl~asaqK~l-G--P~Glg 336 (621)
.+++++++|++=.-.|.+.-..|+ + ++ .+|+++|||-+ +-+...|+++- .|+++-|+=|++ | -.-.|
T Consensus 139 ~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~G-aDivvhS~TKy~~GhsdvlgG 217 (391)
T d1cl1a_ 139 HLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFG-IDVSIQAATKYLVGHSDAMIG 217 (391)
T ss_dssp TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGT-CSEEEEETTTTTTCSSSCCCE
T ss_pred ccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhhcccccc-cceEEeecchhcccccccccc
Confidence 467889999988888887777775 2 32 46999999987 33455666542 259999999999 4 23467
Q ss_pred EEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy8733 337 VVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDK 415 (621)
Q Consensus 337 ~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g 415 (621)
+++.+++.++++.. +. ...-.++..+..+.+...|+ -+.-+.+++.+.+..+-+.|++.+.
T Consensus 218 ~vv~~~~~~~~~~~-------~~-----~~~G~~~~p~~a~ll~rgl~------TL~lR~~~~~~nA~~vA~~L~~hp~ 278 (391)
T d1cl1a_ 218 TAVCNARCWEQLRE-------NA-----YLMGQMVDADTAYITSRGLR------TLGVRLRQHHESSLKVAEWLAEHPQ 278 (391)
T ss_dssp EEEECTTTHHHHHH-------HH-----HHTTCCCCHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ceeccccccccchh-------hh-----hcccccCCchhhhhhhccch------hHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777777665421 00 01123444444443333322 4667777888888899999998774
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00054 Score=67.65 Aligned_cols=99 Identities=42% Similarity=0.662 Sum_probs=81.8
Q ss_pred hhhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHH
Q psy8733 446 AFFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAK 524 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~ 524 (621)
..+.|+.++|+||++| |.|+.++++++...+.... ......|....+....+.||+...++.+..+..++...+|.+.
T Consensus 184 ~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (360)
T d1bjna_ 184 VSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIA-CPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAE 262 (360)
T ss_dssp GGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTT-SCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred eccceeEEEEcccccccCCCceeEeeehhhhhcccc-CCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHH
Confidence 4568999999999999 7789999998887765433 3334445666778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q psy8733 525 MEQNSLQKSVLLYQEIDNSDK 545 (621)
Q Consensus 525 ~~~~~~~ka~~lY~~id~~~~ 545 (621)
.+++.++++.+++..++....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~ 283 (360)
T d1bjna_ 263 MDKINQQKAELLYGVIDNSDF 283 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhhhcccc
Confidence 999999999999998877653
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=97.03 E-value=0.00022 Score=72.12 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=117.1
Q ss_pred hhhHHHHHhhcccccc-cCCcEEeeecHhHhhhcCC----CCCceeeee-------ecccCCCccCCCchhHHHHHHHHH
Q psy8733 446 AFFFGVIIAGAQKNIG-PAGITVVIVREDLLEYALP----ITPTVFHFK-------INADNNSVYNTPPTFVVHVIQRVF 513 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~----~~p~~~~y~-------~~~~~~s~~nTP~~~~iy~~~~vl 513 (621)
.+..|++.+|+||.+| |.|++++++|+++++.... ..+...++. ......++++||++..++.+...+
T Consensus 192 ~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l 271 (388)
T d2ch1a1 192 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREAL 271 (388)
T ss_dssp TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHH
T ss_pred ccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHH
Confidence 3457888999999996 9999999999999876332 222222221 223457899999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHhccCCcccccCCC---C---------Ccc-cHHHHHHHH-HccCccccCCCC-
Q psy8733 514 AWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYECPVQA---G---------FPL-DELFLKEAK-AHNMIQLKGHRL- 578 (621)
Q Consensus 514 ~~~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~~v~~---~---------~~~-~~~~~~~~~-~~~i~~~~g~~~- 578 (621)
+|+.+. |.....++..++...++...++... +....++ + ... ..+|.+.++ ++||+...|++.
T Consensus 272 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~ 349 (388)
T d2ch1a1 272 AQIAEE-GLENQIKRRIECAQILYEGLGKMGL-DIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPT 349 (388)
T ss_dssp HHHHHH-CHHHHHHHHHHHHHHHHHHHHHHTC-CBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGG
T ss_pred HHHHHh-hhHHHHHHHHHHHHHHHhhhhhccc-ccccCCHHHhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCccc
Confidence 999854 6888888888888888888877552 2222222 1 112 356877774 469998888875
Q ss_pred CC-ccceeeccCC-CHHHHHHHHHHHHHHHHH
Q psy8733 579 VG-GIRASIYNAI-TVDEAVILVKFMKEFRHK 608 (621)
Q Consensus 579 ~~-~~r~~~~~a~-~~~~~~~l~~~~~~~~~~ 608 (621)
.| .|||+++-.. +.|+++.|++.|+++-+.
T Consensus 350 ~~~~~RIs~~g~~~t~edI~~ll~alke~L~~ 381 (388)
T d2ch1a1 350 FGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 381 (388)
T ss_dssp TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 44 5899987544 789999999999998876
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=96.98 E-value=0.00042 Score=69.09 Aligned_cols=103 Identities=34% Similarity=0.658 Sum_probs=82.9
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCceeeeeecccCCCccCCCchhHHHHHHHHHHHHHhcCChHHHH
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKME 526 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~~~~~gg~~~~~ 526 (621)
+.|+.|++.||++| |.|.++++.++...++ .+..+....|.......++.+||+....+.....+.|+.+.|+...++
T Consensus 186 ~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (360)
T d1w23a_ 186 QFGMIYAGAQKNLGPSGVTVVIVKKDLLNTK-VEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIA 264 (360)
T ss_dssp GCSEEEEETTTTTSCTTCEEEEEEHHHHCSC-CTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cccceEEeeccccccCCcceeeEechhhhcc-cccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHH
Confidence 56889999999999 4566666665555444 444566666777788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCcccccC
Q psy8733 527 QNSLQKSVLLYQEIDNSDKFYECPV 551 (621)
Q Consensus 527 ~~~~~ka~~lY~~id~~~~~~~~~v 551 (621)
++.+++...++.++.....+....+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (360)
T d1w23a_ 265 KQNEEKAKIIYDTIDESNGFYVGHA 289 (360)
T ss_dssp HHHHHHHHHHHHHHHTTTTSSEESS
T ss_pred HHHHHHHHHHHHHHhhcccccccCC
Confidence 9999999999999988775444443
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.0045 Score=63.77 Aligned_cols=128 Identities=11% Similarity=0.050 Sum_probs=81.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecc--cccCCCcccccccceEEeccccccCCC---ccEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMS--SNFLSRKFDVSKFGVIIAGAQKNIGPA---GITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDav--Ss~G~~pIDv~~~gvl~asaqK~lGP~---Glg~li 339 (621)
+.++|++|++=.-.|.+.-+.|+ +++++|+++|||-+ +-+..+|+++- .|+++-|+-|+++-. =.|+++
T Consensus 132 ~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~~G-aDiVvhS~TKyi~Ghsdv~~G~vv 210 (384)
T d1cs1a_ 132 LAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALG-ADLVLHSCTKYLNGHSDVVAGVVI 210 (384)
T ss_dssp HHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGT-CSEEEEETTTTTTCSSCCCCEEEE
T ss_pred ccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccccccccC-CCEEEEccccccccCCCccccccc
Confidence 56789988887777777777775 45689999999998 45566776652 359999999999422 245566
Q ss_pred EchhH-HhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDL-LEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~l-l~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+++. ++++.. +. ...-.+++.+..+.+...|+ -+.-+.+++.+.+..|-+.|++.+.+
T Consensus 211 ~~~~~~~~~~~~-------~~-----~~~G~~~~p~~a~ll~rgL~------TL~lRm~~~~~nA~~lA~~L~~hp~V 270 (384)
T d1cs1a_ 211 AKDPDVVTELAW-------WA-----NNIGVTGGAFDSYLLLRGLR------TLVPRMELAQRNAQAIVKYLQTQPLV 270 (384)
T ss_dssp ESSHHHHHHHHH-------HH-----HHHTCBCCHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred CCchhhhhhhhh-------hh-----hhhhhccccccHHHHhhccc------hhHHHHHHHHHHHHHHHHhcccCCce
Confidence 65443 332210 00 01112344444443333332 35667777888888899999887743
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.75 E-value=0.0036 Score=64.82 Aligned_cols=128 Identities=9% Similarity=0.028 Sum_probs=82.5
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEecc--cccCCCcccccccceEEeccccccC-C--CccEEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMS--SNFLSRKFDVSKFGVIIAGAQKNIG-P--AGITVVI 339 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDav--Ss~G~~pIDv~~~gvl~asaqK~lG-P--~Glg~li 339 (621)
+.+++++|++=.-.|.+.-..|+ +++++|+++|||-+ +-+...|++.- .|+++-|.-|.+| - -..|++.
T Consensus 150 ~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~G-aDiVihS~TKy~~Ghsdv~~G~v~ 228 (398)
T d1qgna_ 150 NQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALG-ADLVLHSATKFLGGHNDVLAGCIS 228 (398)
T ss_dssp HHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTT-CSEEEECTTTTTTCSSSCCCEEEE
T ss_pred ccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccCCchhhC-CCEEEEechhhcCcccceeehhhc
Confidence 45788888776666666666665 45689999999987 33555666542 3599999999994 2 2356777
Q ss_pred EchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHccCCc
Q psy8733 340 VREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 340 vr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~~g~ 416 (621)
.+++.++++.. +.. ..-.+++.+..+.+...++ -++-+.+++.+.+..|-+.|++.+.+
T Consensus 229 ~~~~~~~~~~~-------~~~-----~~G~~l~p~~a~ll~rgl~------TL~lRm~~~~~nA~~lA~~L~~hp~V 287 (398)
T d1qgna_ 229 GPLKLVSEIRN-------LHH-----ILGGALNPNAAYLIIRGMK------TLHLRVQQQNSTALRMAEILEAHPKV 287 (398)
T ss_dssp ECHHHHHHHHH-------HHH-----HHCCCCCHHHHHHHHHHGG------GHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred chhhhhhhhhh-------hcc-----cCCCcCCHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 77777655421 110 1112444444444333332 36677788888888999999988743
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.0016 Score=66.53 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=55.0
Q ss_pred CCCCceEEEEecccccccccccc--------ccccCCCcEEEecccccCCCccc--------cccc-c--eEEecccccc
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY--------IPDSQGIPLVSDMSSNFLSRKFD--------VSKF-G--VIIAGAQKNI 330 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~--------i~~~~g~llvvDavSs~G~~pID--------v~~~-g--vl~asaqK~l 330 (621)
..++++++.++...|.||...+. ++++++++++.|-+-+-....-+ .... + +++.|.-|.+
T Consensus 170 ~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 249 (397)
T d3tata_ 170 LPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF 249 (397)
T ss_dssp CCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHH
T ss_pred cccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccc
Confidence 45678888888889999999874 45689999999988764432111 0111 2 8889999999
Q ss_pred CCCc--cEEEEEchhHHh
Q psy8733 331 GPAG--ITVVIVREDLLE 346 (621)
Q Consensus 331 GP~G--lg~livr~~ll~ 346 (621)
|.+| +|.++......+
T Consensus 250 ~~~G~RiG~~~~~~~~~~ 267 (397)
T d3tata_ 250 SLYGERVGGLSVMCEDAE 267 (397)
T ss_dssp TBTTTCCBCCEEECSSTT
T ss_pred cccCccccccccchhHHH
Confidence 9888 577777765543
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=96.66 E-value=0.0014 Score=65.98 Aligned_cols=156 Identities=13% Similarity=0.067 Sum_probs=117.2
Q ss_pred hHHHHHhhcccccc-cCCcEEeeecHhHhhhcCCCCCce-----------eeeeecccCCCccCCCchhHHHHHHHHHHH
Q psy8733 448 FFGVIIAGAQKNIG-PAGITVVIVREDLLEYALPITPTV-----------FHFKINADNNSVYNTPPTFVVHVIQRVFAW 515 (621)
Q Consensus 448 ~~~~~~a~~qk~~G-paGl~v~iv~~~~l~~~~~~~p~~-----------~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~ 515 (621)
..|++.++.+|.+| |.|++++++|++++++..+....- ..|.. ....-...||++..++.+...+++
T Consensus 201 ~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gt~~~~~~~~~~~a~~~ 279 (381)
T d1elua_ 201 EVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAE-GGKRFEVATSAYPQYAGLLAALQL 279 (381)
T ss_dssp CCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECS-GGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHhhHHHHHhcCcccccccccccccccccccccc-cccccccccccchhhhhhhhhhhh
Confidence 46788999999997 999999999999987654332111 11111 112235689999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhccCCc--ccccCCCC---------CcccHHHHHHHHHccCccccCCCCCCccce
Q psy8733 516 IKRQGGLAKMEQNSLQKSVLLYQEIDNSDKF--YECPVQAG---------FPLDELFLKEAKAHNMIQLKGHRLVGGIRA 584 (621)
Q Consensus 516 ~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~--~~~~v~~~---------~~~~~~~~~~~~~~~i~~~~g~~~~~~~r~ 584 (621)
+.+.|..+...++..+.++.+++.|++.+++ +..+.+++ ..-.+.+.+.++++||.. +..+..|.+|+
T Consensus 280 ~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v-~~~~~~~~lRi 358 (381)
T d1elua_ 280 HQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYL-RTIADPDCIRA 358 (381)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEEC-EEETTTTEEEE
T ss_pred HHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEE-EecCCCCEEEE
Confidence 9999999888899999999999999987753 22111111 112256788999999863 44455688999
Q ss_pred eeccCCCHHHHHHHHHHHHHH
Q psy8733 585 SIYNAITVDEAVILVKFMKEF 605 (621)
Q Consensus 585 ~~~~a~~~~~~~~l~~~~~~~ 605 (621)
|...-.|.||+++|++.|++|
T Consensus 359 s~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 359 CCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp ECCTTCCHHHHHHHHHHHTTC
T ss_pred ecCCCCCHHHHHHHHHHHHhh
Confidence 988778999999999999986
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=96.65 E-value=0.011 Score=61.35 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=81.7
Q ss_pred CCCCceEEEEecccccccccccc-----ccccCCCcEEEeccc---ccCCCcccccccceEEeccccccC--CCc-cEEE
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPDSQGIPLVSDMSS---NFLSRKFDVSKFGVIIAGAQKNIG--PAG-ITVV 338 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~~~g~llvvDavS---s~G~~pIDv~~~gvl~asaqK~lG--P~G-lg~l 338 (621)
++++|++|++=.-.|.+.-+.|+ +++++|+++|||-+= -+...|++.- .|+++-|+-|.+| --- .|++
T Consensus 141 ~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~G-aDiVvhS~TKyl~GHsD~l~G~v 219 (421)
T d2ctza1 141 TDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWG-AALVTHSLTKWVGGHGAVIAGAI 219 (421)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGT-CSEEEEETTTTTTCSSCCCCEEE
T ss_pred cCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceeccccccC-CcEEEEechhhccCCCCeEEEEE
Confidence 67899999887777777777776 456889999999773 2456676653 3599999999994 333 4555
Q ss_pred EEchhH-HhhhCC-----CCCceeeccc--c---------cc-C--CCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHH
Q psy8733 339 IVREDL-LEYALP-----ITPTVFHFKI--N---------AD-N--NSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQN 398 (621)
Q Consensus 339 ivr~~l-l~~~~~-----~~P~~ld~~~--~---------~~-~--~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r 398 (621)
+.+++. ++..+. ..|.+..... . .. . ...-.+++.+..+.+...|+ -++-+.++
T Consensus 220 v~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~------TL~lRm~~ 293 (421)
T d2ctza1 220 VDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGME------TLSLRAER 293 (421)
T ss_dssp EECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHT------THHHHHHH
T ss_pred EcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCc------chhhHHHH
Confidence 555443 211110 0111100000 0 00 0 00112333333333222222 36777888
Q ss_pred HHHHHHHHHHHHHccCCc
Q psy8733 399 SLQKSVLLYQEIDNSDKF 416 (621)
Q Consensus 399 ~~~la~~L~e~L~~~~g~ 416 (621)
+.+.+..+-+.|++.+.+
T Consensus 294 ~~~nA~~vA~~L~~hp~V 311 (421)
T d2ctza1 294 HVENTLHLAHWLLEQPQV 311 (421)
T ss_dssp HHHHHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHhhhccCCCe
Confidence 888899999999988744
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.26 Score=50.58 Aligned_cols=129 Identities=14% Similarity=0.176 Sum_probs=80.4
Q ss_pred CCceEEEEecccc-ccccccc-c--------ccccCCCcEEEecccc-cCCC--cccccccc----eEEecccccc--CC
Q psy8733 272 PEASYLYYCDNET-VDGVEFN-Y--------IPDSQGIPLVSDMSSN-FLSR--KFDVSKFG----VIIAGAQKNI--GP 332 (621)
Q Consensus 272 ~~t~~V~~thnET-~tGv~~p-~--------i~~~~g~llvvDavSs-~G~~--pIDv~~~g----vl~asaqK~l--GP 332 (621)
++..+|.+-..-. ..|+..+ . +++++|+++|+|=+|+ +|-. -.-.+.+| +++.| |.+ |-
T Consensus 203 ~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~ 280 (429)
T d1s0aa_ 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG--KALTGGT 280 (429)
T ss_dssp TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSS
T ss_pred CccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccccc--ccccccc
Confidence 4566666554432 2345443 1 4568999999999998 3221 12223343 55554 777 34
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
.-++.+..++++.+...+..... ....++++. +..+..+..++|+.+.++ ++.++.+++.++|++.|++
T Consensus 281 ~p~~av~~~~~i~~~~~~~~~~~------~~~~~T~~g-np~~~aaa~a~L~~i~~~----~~~~~~~~~g~~l~~~L~~ 349 (429)
T d1s0aa_ 281 MTLSATLTTREVAETISNGEAGC------FMHGPTFMG-NPLACAAANASLAILESG----DWQQQVADIEVQLREQLAP 349 (429)
T ss_dssp SCCEEEEECHHHHHHHHTSTTSS------CSCCCTTTT-CHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHGG
T ss_pred ccccchhhHHHHHhccCCCCCcc------eeecCCCCC-Ccccchhhhccccccccc----cccchhhHHHHHHHHHHHH
Confidence 55899999999987654321110 012344433 345667778899999875 5677888889999999977
Q ss_pred c
Q psy8733 413 S 413 (621)
Q Consensus 413 ~ 413 (621)
+
T Consensus 350 l 350 (429)
T d1s0aa_ 350 A 350 (429)
T ss_dssp G
T ss_pred h
Confidence 5
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=96.31 E-value=0.21 Score=50.65 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=74.7
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--CC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--PA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P~ 333 (621)
++..+|.+=..-...|...|- +++++|+++|+|=+|+ +|- ...-.+.+| +++.| |.+| -.
T Consensus 185 ~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~ 262 (404)
T d1z7da1 185 PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLG--KALSGGHY 262 (404)
T ss_dssp TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSS
T ss_pred CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEEEc--ccccCCCC
Confidence 345555553333344666652 4568999999999996 432 333344454 66655 8883 23
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
=+|.+.+++++.+...+ . ...++++..| .+..+..++|+.+.+..-.+.+.+....+.+.+.+.+++
T Consensus 263 p~~~v~~~~~i~~~~~~---~--------~~~~T~~gnp-l~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (404)
T d1z7da1 263 PISAVLANDDIMLVIKP---G--------EHGSTYGGNP-LAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD 329 (404)
T ss_dssp CCEEEEECHHHHTTCCT---T--------CCCCTTTTCH-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccchHHHHccCCC---C--------CcCcCCCCCc-chhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhc
Confidence 47899999999765432 1 1245665433 455566778998887633344444444444444444444
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.029 Score=57.57 Aligned_cols=124 Identities=14% Similarity=0.224 Sum_probs=78.1
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEeccccccC--CC
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNIG--PA 333 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~lG--P~ 333 (621)
++..+|.+=..-...|+..+- +++++|+++|+|=+++ +|- ...-.+.+| +++.| |.+| -.
T Consensus 187 ~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~ 264 (404)
T d2byla1 187 PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLG--KALSGGLY 264 (404)
T ss_dssp TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSS
T ss_pred CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEEEEC--chhhCCCc
Confidence 455555553333334656541 4568999999999997 322 223334444 66554 8883 23
Q ss_pred ccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 334 GITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 334 Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
=+|.+++++++.+...+ . ...++++. +..+..+..++|+.+.++ ++.++.+++.+++.+.|+++
T Consensus 265 p~~av~~~~~i~~~~~~---~--------~~~~T~~g-npl~~aaa~a~L~~i~~~----~l~~~~~~~g~~l~~~l~~l 328 (404)
T d2byla1 265 PVSAVLCDDDIMLTIKP---G--------EHFSTYGG-NPLGCRVAIAALEVLEEE----NLAENADKLGIILRNELMKL 328 (404)
T ss_dssp CCEEEEECHHHHTTSCT---T--------SSCCSSTT-CHHHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHTS
T ss_pred cceeeeechhhhhccCC---C--------CCCcCCCc-CHHHHHHHHHHHHHHHhc----CchhhhhHhhHHHHHHHHhh
Confidence 37899999998764422 1 12355544 334566777899999886 35566777788899988875
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=96.00 E-value=0.16 Score=52.07 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=74.1
Q ss_pred CceEEEEecccccccccccc---------ccccCCCcEEEecccccC-CCc-ccccccc----eEEecccccc--C-CCc
Q psy8733 273 EASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSNFL-SRK-FDVSKFG----VIIAGAQKNI--G-PAG 334 (621)
Q Consensus 273 ~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs~G-~~p-IDv~~~g----vl~asaqK~l--G-P~G 334 (621)
+..+|.+-..-...|+..|- +++++|+++|+|=+|+-. .-. .-.+.+| +++.| |.+ | |.
T Consensus 199 ~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~g--K~lggG~p~- 275 (427)
T d2gsaa_ 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPV- 275 (427)
T ss_dssp TEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEEC--GGGGTTSCC-
T ss_pred CeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHhhh--hccCCCcce-
Confidence 45566654544555777662 456899999999999732 111 1122333 66666 677 4 44
Q ss_pred cEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 335 ITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 335 lg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
+.++.++++.+.+.+..+ ....++++-. ..+..+..++|+.+.++ + +.++.+++.++|.+.|.++
T Consensus 276 -~a~~~~~~i~~~~~~~~~--------~~~~~T~~gn-pla~AAala~Le~i~~~-~---l~~~~~~~g~~l~~~L~~l 340 (427)
T d2gsaa_ 276 -GAYGGKREIMQLVAPAGP--------MYQAGTLSGN-PLAMTAGIKTLELLRQP-G---TYEYLDQITKRLSDGLLAI 340 (427)
T ss_dssp -EEEEECHHHHTTBTTTSS--------BCCCCTTTTC-HHHHHHHHHHHHHHTST-T---HHHHHHHHHHHHHHHHHHH
T ss_pred -eeeeehHHHHHHhcccCC--------CcCCCCCCCC-chhhHHHHHhhHHhhhh-h---HHhhhhHHHHHHHHHHHHH
Confidence 457789998876543211 1124555433 44567777889999876 3 3445555666666666543
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=95.69 E-value=0.092 Score=53.28 Aligned_cols=125 Identities=13% Similarity=0.235 Sum_probs=75.8
Q ss_pred CCCCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCCC--ccccccc----ceEEecccccc--C
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLSR--KFDVSKF----GVIIAGAQKNI--G 331 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~~--pIDv~~~----gvl~asaqK~l--G 331 (621)
++++..+|.+=......|+..+- +++++|+++|+|=+++ +|-. ..-.+.+ |+++.| |.+ |
T Consensus 174 ~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG 251 (387)
T d1vefa1 174 VDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA--KALGGG 251 (387)
T ss_dssp CCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTT
T ss_pred cCCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeec--ccCCCC
Confidence 34566666553333334666541 4568999999999997 4322 1122233 366665 888 4
Q ss_pred CCccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Q psy8733 332 PAGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEID 411 (621)
Q Consensus 332 P~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~ 411 (621)
-+ ++.+..+++..+...+ . ..+++++.- ..+..+..++|+.+.+. ++.++.+++.+++.+.|+
T Consensus 252 ~~-~~~~~~~~~~~~~~~~---~--------~~g~T~~gn-Pla~aaa~a~L~~l~~~----~~~~~v~~~g~~l~~~L~ 314 (387)
T d1vefa1 252 VP-LGVAVMREEVARSMPK---G--------GHGTTFGGN-PLAMAAGVAAIRYLERT----RLWERAAELGPWFMEKLR 314 (387)
T ss_dssp SS-CEEEEEEHHHHHTSCT---T--------SSCCSSTTC-HHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHH
T ss_pred cc-ccccccceeeeecccc---C--------CccccCCCC-cchhhhcccchhhcccc----cccchHhhhhHHHHHHHH
Confidence 22 4566777777654321 1 124566543 44556667789999875 456677778888999888
Q ss_pred cc
Q psy8733 412 NS 413 (621)
Q Consensus 412 ~~ 413 (621)
++
T Consensus 315 ~l 316 (387)
T d1vefa1 315 AI 316 (387)
T ss_dssp TS
T ss_pred hc
Confidence 75
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.10 E-value=0.061 Score=55.15 Aligned_cols=125 Identities=14% Similarity=0.157 Sum_probs=78.3
Q ss_pred CCCCceEEEEecccccccccccc-----ccc----cCCCcEEEecc--cccCCCcccccccceEEecccccc-C-CCc-c
Q psy8733 270 RDPEASYLYYCDNETVDGVEFNY-----IPD----SQGIPLVSDMS--SNFLSRKFDVSKFGVIIAGAQKNI-G-PAG-I 335 (621)
Q Consensus 270 i~~~t~~V~~thnET~tGv~~p~-----i~~----~~g~llvvDav--Ss~G~~pIDv~~~gvl~asaqK~l-G-P~G-l 335 (621)
+++++++|++=.-.|++.-..|+ +++ .+|+++|||-+ +-+..+|++.- .|+++-|+-|++ | --- .
T Consensus 135 i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~G-ADiVvhS~TKyi~GhsDv~~ 213 (393)
T d1n8pa_ 135 IKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFG-ADIVVHSATKYINGHSDVVL 213 (393)
T ss_dssp SCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGT-CSEEEEETTTTTTCSSCCCC
T ss_pred hhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCCchhhC-CCEEEEccccccCCCCcccc
Confidence 67889988877777777777775 233 67899999988 44666777763 369999999999 4 222 3
Q ss_pred EEEEEchh-HHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcc
Q psy8733 336 TVVIVRED-LLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDNS 413 (621)
Q Consensus 336 g~livr~~-ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~~ 413 (621)
|+++.++. +++++.. +.. ..-.+++.+..+.+...++ -++-+.+++.+.+..+-+.|++.
T Consensus 214 G~v~~~~~~~~~~l~~-------~~~-----~~G~~~~p~~a~ll~rgl~------Tl~lR~~~~~~nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 214 GVLATNNKPLYERLQF-------LQN-----AIGAIPSPFDAWLTHRGLK------TLHLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp EEEEESCHHHHHHHHH-------HHH-----HHCCCCCHHHHHHHHHHHT------THHHHHHHHHHHHHHHHHHHTSC
T ss_pred ceeeecchhHHHHHHH-------HHh-----hcCCCCChHHHHHHHhCCc------chhhHHHHHHHHHHHHHHHHHhc
Confidence 45555543 4444321 000 1112444444444333332 35666777888888888888754
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.049 Score=55.24 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=71.8
Q ss_pred hhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCCceee-----------eeecccCCCccCCCchhHHHHHHHHHH
Q psy8733 446 AFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITPTVFH-----------FKINADNNSVYNTPPTFVVHVIQRVFA 514 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p~~~~-----------y~~~~~~~s~~nTP~~~~iy~~~~vl~ 514 (621)
....|.+.+|..|=+||-|++++.++++++++..+....... |...+... ..-|||+..++-+...++
T Consensus 213 ~~~~D~~~~s~hK~~Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-e~GT~~~~~~~~l~~al~ 291 (405)
T d1jf9a_ 213 ALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRF-EAGTPNTGGIIGLGAALE 291 (405)
T ss_dssp HHTCSEEEEEGGGTTSCSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGG-CCSSCCHHHHHHHHHHHH
T ss_pred hcCCceeeccccccccCCCceeeeechhhhcccCcccccccccCccccccccccccchhhh-cCCCCcHHHHHHHHHHHH
Confidence 556899999999999999999999999999875443221111 11111111 136999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHhccC
Q psy8733 515 WIKRQGGLAKMEQNSLQKSVLLYQEIDNSD 544 (621)
Q Consensus 515 ~~~~~gg~~~~~~~~~~ka~~lY~~id~~~ 544 (621)
++++.| .+.++++...-++.+.+.++..+
T Consensus 292 ~~~~~g-~~~i~~~~~~L~~~~~~~l~~~~ 320 (405)
T d1jf9a_ 292 YVSALG-LNNIAEYEQNLMHYALSQLESVP 320 (405)
T ss_dssp HHHHHC-HHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHhC-hHHHHHHHHHHHHHHHhhhhcCC
Confidence 998775 88888888777777777776654
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=94.61 E-value=0.036 Score=56.32 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=119.2
Q ss_pred hhhHHHHHhhcccccccCCcEEeeecHhHhhhcCCCCC----------ceeeeeecccCCCccCCCchhHHHHHHHHHHH
Q psy8733 446 AFFFGVIIAGAQKNIGPAGITVVIVREDLLEYALPITP----------TVFHFKINADNNSVYNTPPTFVVHVIQRVFAW 515 (621)
Q Consensus 446 ~~~~~~~~a~~qk~~GpaGl~v~iv~~~~l~~~~~~~p----------~~~~y~~~~~~~s~~nTP~~~~iy~~~~vl~~ 515 (621)
....|.+.+|+.|=+||.|+++++++++++.+..+... .-..|...+. .-..-|||+..++-+...+++
T Consensus 213 ~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~-r~e~Gt~~~~~~~~l~~al~~ 291 (408)
T d1t3ia_ 213 LIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPH-KFEAGTPAIAEAIALGAAVDY 291 (408)
T ss_dssp HHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTG-GGCCSSCCHHHHHHHHHHHHH
T ss_pred ccCCceEEeccccccCCCCccccccchhhhhcCCceecCCcccccccccccccCCchh-hhcCCcHHHHHHHHHHHHHHH
Confidence 45679999999998899999999999999876443211 0011111111 112579999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhccCCcccc--cCCC---C-------Cc-ccHHHHHHHHHccCccccCC------
Q psy8733 516 IKRQGGLAKMEQNSLQKSVLLYQEIDNSDKFYEC--PVQA---G-------FP-LDELFLKEAKAHNMIQLKGH------ 576 (621)
Q Consensus 516 ~~~~gg~~~~~~~~~~ka~~lY~~id~~~~~~~~--~v~~---~-------~~-~~~~~~~~~~~~~i~~~~g~------ 576 (621)
+.+. |.+.++++..+-++.+++.+...++.-.. ..+. . .. -...+.+.+.++||+.-.|+
T Consensus 292 ~~~~-g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~ 370 (408)
T d1t3ia_ 292 LTDL-GMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPL 370 (408)
T ss_dssp HHHH-CHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHH
T ss_pred HHHc-CHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcccccHH
Confidence 9877 59999999999999999999877643211 1110 0 11 23457788899999876664
Q ss_pred ----CCCCccceeeccCCCHHHHHHHHHHHHHHHHHc
Q psy8733 577 ----RLVGGIRASIYNAITVDEAVILVKFMKEFRHKH 609 (621)
Q Consensus 577 ----~~~~~~r~~~~~a~~~~~~~~l~~~~~~~~~~~ 609 (621)
+..|.+|+|.=.-.|.||+++|++.|++..+..
T Consensus 371 ~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 371 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 335779999999999999999999999987764
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=94.33 E-value=0.39 Score=48.90 Aligned_cols=123 Identities=14% Similarity=0.108 Sum_probs=67.2
Q ss_pred CCceEEEEecccccccccccc---------ccccCCCcEEEecccc-cCC--Ccccccccc----eEEecccccc--C-C
Q psy8733 272 PEASYLYYCDNETVDGVEFNY---------IPDSQGIPLVSDMSSN-FLS--RKFDVSKFG----VIIAGAQKNI--G-P 332 (621)
Q Consensus 272 ~~t~~V~~thnET~tGv~~p~---------i~~~~g~llvvDavSs-~G~--~pIDv~~~g----vl~asaqK~l--G-P 332 (621)
.+..+|.+-..-...|+..+- +++++|+++|+|=+++ +|- ...-.+.+| +++.| |.+ | |
T Consensus 200 ~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p 277 (431)
T d1zoda1 200 GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLS--KTLGAGLP 277 (431)
T ss_dssp SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSS
T ss_pred ccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhccc--cccccccc
Confidence 345555544443444565541 4568999999999998 342 223333343 66665 777 4 5
Q ss_pred CccEEEEEchhHHhhhCCCCCceeeccccccCCCccCCchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHc
Q psy8733 333 AGITVVIVREDLLEYALPITPTVFHFKINADNNSVYNTPPTFVVHVIQRVFAWIKRQGGLAKMEQNSLQKSVLLYQEIDN 412 (621)
Q Consensus 333 ~Glg~livr~~ll~~~~~~~P~~ld~~~~~~~~s~~~TP~v~~I~aL~~aL~~i~~~gGl~~i~~r~~~la~~L~e~L~~ 412 (621)
+ +.++++++..+.... + .....+++. -+..+..+..++|+.+.++ . +.++..++.+++.+.+.+
T Consensus 278 ~--~av~~~~~~~~~~~~--~-------~~~~~~T~~-g~pl~~aaa~a~l~~i~~~-~---~~~~~~~~g~~l~~~l~~ 341 (431)
T d1zoda1 278 L--AAIVTSAAIEERAHE--L-------GYLFYTTHV-SDPLPAAVGLRVLDVVQRD-G---LVARANVMGDRLRRGLLD 341 (431)
T ss_dssp C--EEEEECHHHHHHHHH--T-------TCCCCCTTT-TCHHHHHHHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHH
T ss_pred c--ceeeeeecchhhhhc--c-------cccccCCCC-CCcchHHHHHHHHHHhhhh-h---hhHHHHHHHHHHhhhhhh
Confidence 4 445666666544311 0 011234443 3344556677789988876 3 344444444555554443
|