Psyllid ID: psy8734

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MTMIRSLLIVLIVNAVVSLICAAPYKALPKLESGPKGLPLMYVPMVRKGKPEAPAVEVHVHEARLGEAPDTGDSDSGMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAKYCTPREGRENE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHcccccccEEEEEHHHccccHHcccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHccccccccccccccccEEcccHcHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccEEEcHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHcc
Coil and Loop (DISEMBL)
MTMIRSLLIVLIVNAVVSLICaapykalpklesgpkglplmyvpmvrkgkpeapaveVHVHearlgeapdtgdsdsgmhspDAIMNIVKatdfashkhhfqrrkdpegtpyiehPVAVAHILTHLGKVSNPVVIISALLhdtvedtdTTFEEIEREFGPRVRSVVEeltdnkhmtrDERKrcqilhaphssheAKLVKLADKLHNLRDierslpvnwteerktqYFNWARDVVQglrgtnapiEAELDALFAkyctpregrene
Flexible Loop (DISEMBL)
MTMIRSLLIVLIVNAVVSLICAAPYkalpklesgpkGLPLMYVPMVRKGKPEAPAVEVHVHEARLgeapdtgdsdsgMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEeierefgprvrsvveeltdnkhmtrdERKRCQIlhaphssheakLVKLADKLHNLRDIerslpvnwteerktqyfNWARDVVQGLRGTNAPIEAELDALFAKyctpregrene
Low Complexity Region (SEG)
MTMIRSLLIVLIVNAVVSLICAAPYKALPKLESGPKGLPLMYVPMVRKGKPEAPAVEVHVHEARLGEAPDTGDSDSGMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHdtvedtdttfeeiereFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAKYCTPREGRENE
Disordered region (IsUnstruct)
***IRSLLIVLIVNAVVSLICAAPYKALPKLESGPKGLPLMYVPMV***************************************NIVKATDF***************TPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFG************************************KLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAKYCT********
Disordered Region (DISOPRED)
***IRSLLIVLIVNAVVSLI***************************************************GDSDSGMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPV*W**ERKTQYFNWARDVVQGLRGTNAPIEAELDALFAKYCTPREGRE**
Disordered Region (DISEMBL)
MTMIRSLLIVLIVNAVVSLICAAPYKALPKLESGPKGLPLMYVPMVRKGKPEAPAVEVHVHEARLGEA*********MHSPDAIMNIVKATDFA**********DPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAKYCTPREGRENE
Disordered Region (DISPRO)
*TMIRSLLIVLIVNAVVSLICAAPYKAL***************************VEVHVHEARLGEAPDTGDSDSGMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAKYCTPREGRENE
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTMIRSLLIVLIVNAVVSLICAAPYKALPKLESGPKGLPLMYVPMVRKGKPEAPAVEVHVHEARLGEAPDTGDSDSGMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAKYCTPREGRENE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q28C98	179	Guanosine-3',5'-bis(dipho	yes	N/A	0.647	0.955	0.587	2e-54
Q9D114	179	Guanosine-3',5'-bis(dipho	yes	N/A	0.628	0.927	0.590	1e-52
Q568P1	180	Guanosine-3',5'-bis(dipho	yes	N/A	0.625	0.916	0.575	8e-52
Q8N4P3	179	Guanosine-3',5'-bis(dipho	yes	N/A	0.636	0.938	0.577	3e-51
Q9VAM9	179	Guanosine-3',5'-bis(dipho	yes	N/A	0.625	0.921	0.503	2e-44
P29941	175	Uncharacterized 19.2 kDa	N/A	N/A	0.473	0.714	0.435	9e-17
O67012	696	Guanosine-3',5'-bis(dipho	yes	N/A	0.704	0.267	0.341	3e-16
Q8YG65	750	GTP pyrophosphokinase rsh	yes	N/A	0.465	0.164	0.408	3e-15
A5VPI9	750	GTP pyrophosphokinase rsh	yes	N/A	0.465	0.164	0.408	4e-15
Q8CY42	750	GTP pyrophosphokinase rsh	yes	N/A	0.465	0.164	0.408	4e-15

>sp|Q28C98|MESH1_XENTR Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Xenopus tropicalis GN=hddc3 PE=2 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/172 (58%), Positives = 134/172 (77%), Gaps = 1/172 (0%)

Query: 80  SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
           S DA + I++A +FA+ KH  QRRKDPE TPYI HP+ VA IL+H G +++  V+ +ALL
Sbjct: 2   SSDAAL-ILEAANFAAEKHKQQRRKDPEKTPYINHPLGVARILSHEGGITDTAVLQAALL 60

Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKL 199
           HDTVEDT+TTFEEIE  FG  VR++VEE+TD+K + + ERKR Q+ HAPH S +AKLVKL
Sbjct: 61  HDTVEDTNTTFEEIELHFGQDVRNIVEEVTDDKTLPKMERKRLQMEHAPHCSQKAKLVKL 120

Query: 200 ADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
           ADKL+NLRD++R  P  W+E+R  +YF WA +VV+GLRGTN+ +E +LD +F
Sbjct: 121 ADKLYNLRDLKRCTPEGWSEQRVQEYFQWASEVVKGLRGTNSILEGKLDHMF 172

ppGpp hydrolyzing enzyme involved in starvation response.
Xenopus tropicalis (taxid: 8364)
EC: 3EC: .EC: 1EC: .EC: 7EC: .EC: 2

>sp|Q9D114|MESH1_MOUSE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Mus musculus GN=Hddc3 PE=2 SV=1

 Score =  206 bits (524), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 124/166 (74%)

Query: 86  NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVED 145
            +++A DFA+HKH  QRRKDPEGTPYI HP+ VA ILTH   +++ VV+ +ALLHDTVED
Sbjct: 7   QLLEAADFAAHKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVED 66

Query: 146 TDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHN 205
           TDTT +E+E  FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKL+N
Sbjct: 67  TDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQQVEQAPHSSPGAKLVKLADKLYN 126

Query: 206 LRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
           LRD+ R  P  W+E R  +YF WA  VV+GL+GTN  +E  L  LF
Sbjct: 127 LRDLNRCTPTGWSEHRVQEYFEWAAQVVKGLQGTNQQLEEALKQLF 172

ppGpp hydrolyzing enzyme involved in starvation response.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: .

EC: 2

>sp|Q568P1|MESH1_DANRE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Danio rerio GN=hddc3 PE=2 SV=1

 Score =  204 bits (518), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 95/165 (57%), Positives = 124/165 (75%)

Query: 87  IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
           +++  +FA+ KH  QR KDPEGTPYI HP+ VA IL+H G++++  VI +ALLHDTVEDT
Sbjct: 9   LLETVNFAAEKHRNQRHKDPEGTPYINHPIGVARILSHEGEITDVEVIQAALLHDTVEDT 68

Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
           DTTFEE+E  FG  V  +V+ +TD+K + + ER+R Q+ HAPH SH+AKLVKLADKL+NL
Sbjct: 69  DTTFEELESVFGATVARIVQGVTDDKSLPKAERERQQVEHAPHCSHQAKLVKLADKLYNL 128

Query: 207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
           RD+ R  P  W+ +R  +YF WA  VV+GLRGTNA IE +L  LF
Sbjct: 129 RDLNRCTPEGWSAQRVQEYFEWASQVVKGLRGTNAAIEEKLQQLF 173

ppGpp hydrolyzing enzyme involved in starvation response.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: .

EC: 2

>sp|Q8N4P3|MESH1_HUMAN Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Homo sapiens GN=HDDC3 PE=1 SV=3

 Score =  201 bits (512), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 124/168 (73%)

Query: 86  NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVED 145
            +++A DFA+ KH  QRRKDPEGTPYI HP+ VA ILTH   +++ VV+ +ALLHDTVED
Sbjct: 7   QLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVED 66

Query: 146 TDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHN 205
           TDTT +E+E  FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKL+N
Sbjct: 67  TDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYN 126

Query: 206 LRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAK 253
           LRD+ R  P  W+E R  +YF WA  VV+GL+GTN  +E  L  LF +
Sbjct: 127 LRDLNRCTPEGWSEHRVQEYFEWAAQVVKGLQGTNRQLEEALKHLFKQ 174

ppGpp hydrolyzing enzyme involved in starvation response.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: .

EC: 2

>sp|Q9VAM9|MESH1_DROME Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Drosophila melanogaster GN=Mesh1 PE=1 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 118/165 (71%)

Query: 87  IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
            ++   +A+ KH  QRRKDP+ TPY+ H + V+ IL+    +++  V+++ALLHD VEDT
Sbjct: 9   FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDT 68

Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
           D +FE++E+ FGP V  +V E+TD+K + + ERKR QI +A  SS  AKL+KLADKL NL
Sbjct: 69  DASFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNL 128

Query: 207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
           RD++ + P  WT+ER+ QYF WA+ VV  LRGTNA +E +LD +F
Sbjct: 129 RDLQVNTPTGWTQERRDQYFVWAKKVVDNLRGTNANLELKLDEIF 173

ppGpp hydrolyzing enzyme involved in starvation response.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: .

EC: 2

>sp|P29941|YCB8_PSEDE Uncharacterized 19.2 kDa protein in cobO 3'region OS=Pseudomonas denitrificans PE=4 SV=1

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 90  ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTT 149
           A  FA+  H  Q+RK  +G PYI HP+AVA I+  +     P +I +ALLHDTVEDTD T
Sbjct: 17  ALQFATRAHGEQKRK-YDGRPYIVHPIAVAEIVRSVP--HTPEMIAAALLHDTVEDTDAT 73

Query: 150 FEEIEREFGPRVRSVVEELTDNK---HMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
             EI+  FGP+V ++V  LTD     H  R  RK     H   +   AK VKLAD + N 
Sbjct: 74  LLEIKEAFGPKVATLVAWLTDISTPFHGNRQVRKELDRQHLASAPAAAKTVKLADLIDNA 133

Query: 207 RDIERSLPVNW 217
             I+   P  W
Sbjct: 134 IAIKAGDPNFW 144

Pseudomonas denitrificans (taxid: 43306)

>sp|O67012|SPOT_AQUAE Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex aeolicus (strain VF5) GN=spoT PE=3 SV=1

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 103/205 (50%), Gaps = 19/205 (9%)

Query: 63  ARLGEAPDTGDSDSGM-HSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHI 121
           ++LGE     D +  + H P     I +A +FA  KH  Q+RK   G PYI HP+ VA  
Sbjct: 2   SKLGEVSLEEDLEKLLSHYPQHAEEIQRAYEFAKEKHGEQKRKT--GEPYIIHPLNVALK 59

Query: 122 LTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELT---DNKHMTRDE 178
           L  LG   +   II+ALLHDT+EDTDTT+EEI+  FG RV  +VE +T     K+ +   
Sbjct: 60  LAELG--MDHETIIAALLHDTLEDTDTTYEEIKERFGERVAKLVEGVTKIGKIKYKSEQA 117

Query: 179 RKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWT--EERKTQYFNWARDVVQGL 236
               +++ A        L+KL+D+L N++ +       W   EE++ +      ++   L
Sbjct: 118 ENYRKLILATAEDPRVILLKLSDRLDNVKTL-------WVFREEKRKKIAKETMEIYAPL 170

Query: 237 --RGTNAPIEAELDALFAKYCTPRE 259
             R     I+ EL+    KY  P E
Sbjct: 171 AHRLGVWSIKNELEDWAFKYLYPEE 195

In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the degradation of ppGpp into GDP. It may also be capable of catalyzing the synthesis of ppGpp.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: .

EC: 2

>sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=rsh PE=1 SV=2

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 19/142 (13%)

Query: 79  HSPD---AIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT--HLGKVSNPVV 133
           + PD   A++N  KA  +A  KH  Q+R    G PY  HP+ VA ILT  HL + +    
Sbjct: 14  YKPDVNEALLN--KAYVYAMQKHRSQKRA--SGDPYFSHPLEVAAILTDMHLDEAT---- 65

Query: 134 IISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHA 187
           I  ALLHDT+EDT  T +EI++ FGP +  +VE LT  K +    +K  Q      +L A
Sbjct: 66  IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLA 125

Query: 188 PHSSHEAKLVKLADKLHNLRDI 209
                   LVKLAD+LHN+R +
Sbjct: 126 ISEDVRVLLVKLADRLHNMRTL 147

Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. It is necessary for persistence in mice, essential for intracellular growth of Brucella and required for expression of the type IV secretion system VirB and therefore plays a role in adaptation of Brucella to its intracellular host environment.

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

EC: 2

EC: .

EC: 7

EC: .

EC: 6

EC: .

EC: 5

>sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rsh PE=3 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 19/142 (13%)

Query: 79  HSPD---AIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT--HLGKVSNPVV 133
           + PD   A++N  KA  +A  KH  Q+R    G PY  HP+ VA ILT  HL + +    
Sbjct: 14  YKPDVNEALLN--KAYVYAMQKHGSQKRA--SGDPYFSHPLEVAAILTDMHLDEAT---- 65

Query: 134 IISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHA 187
           I  ALLHDT+EDT  T +EI++ FGP +  +VE LT  K +    +K  Q      +L A
Sbjct: 66  IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLA 125

Query: 188 PHSSHEAKLVKLADKLHNLRDI 209
                   LVKLAD+LHN+R +
Sbjct: 126 ISEDVRVLLVKLADRLHNMRTL 147

Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. Plays a role in adaptation of Brucella to its intracellular host environment.

Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) (taxid: 444178)

EC: 2

EC: .

EC: 7

EC: .

EC: 6

EC: .

EC: 5

>sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis biovar 1 (strain 1330) GN=rsh PE=1 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 19/142 (13%)

Query: 79  HSPD---AIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT--HLGKVSNPVV 133
           + PD   A++N  KA  +A  KH  Q+R    G PY  HP+ VA ILT  HL + +    
Sbjct: 14  YKPDVNEALLN--KAYVYAMQKHGSQKRA--SGDPYFSHPLEVAAILTDMHLDEAT---- 65

Query: 134 IISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQ------ILHA 187
           I  ALLHDT+EDT  T +EI++ FGP +  +VE LT  K +    +K  Q      +L A
Sbjct: 66  IAIALLHDTIEDTTATRQEIDQLFGPEIGKLVEGLTKLKKLDLVSKKAVQAENLRKLLLA 125

Query: 188 PHSSHEAKLVKLADKLHNLRDI 209
                   LVKLAD+LHN+R +
Sbjct: 126 ISEDVRVLLVKLADRLHNMRTL 147

Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. It is necessary for persistence in mice, essential for intracellular growth of Brucella and required for expression of the type IV secretion system VirB and therefore plays a role in adaptation of Brucella to its intracellular host environment.

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

EC: 2

EC: .

EC: 7

EC: .

EC: 6

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
307177339	208	HD domain-containing protein 3 [Camponot	0.640	0.812	0.591	9e-54
113931302	179	guanosine-3',5'-bis(diphosphate) 3'-pyro	0.647	0.955	0.587	9e-53
350420283	220	PREDICTED: guanosine-3',5'-bis(diphospha	0.632	0.759	0.592	1e-52
156551648	207	PREDICTED: guanosine-3',5'-bis(diphospha	0.651	0.830	0.575	4e-52
340713287	220	PREDICTED: guanosine-3',5'-bis(diphospha	0.632	0.759	0.586	6e-52
57048362	179	PREDICTED: guanosine-3',5'-bis(diphospha	0.628	0.927	0.596	4e-51
410960536	179	PREDICTED: guanosine-3',5'-bis(diphospha	0.628	0.927	0.602	4e-51
354503310	179	PREDICTED: guanosine-3',5'-bis(diphospha	0.636	0.938	0.583	5e-51
21312092	179	guanosine-3',5'-bis(diphosphate) 3'-pyro	0.628	0.927	0.590	8e-51
383861612	227	PREDICTED: guanosine-3',5'-bis(diphospha	0.628	0.731	0.566	9e-51

>gi|307177339|gb|EFN66512.1| HD domain-containing protein 3 [Camponotus floridanus]

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 100/169 (59%), Positives = 129/169 (76%)

Query: 87  IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
           ++K  +FA+ KH  QRRKD   TPYI HP+ VA+IL   G V  PVVI++A+LHDTVEDT
Sbjct: 37  VIKCANFAAEKHRNQRRKDIAQTPYINHPLGVANILIQEGNVFEPVVILAAILHDTVEDT 96

Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
           DTTF EIE+EFG +V  +V+E+TD+K +++ ERKR QI HAP+ S EAKLVKLADKL+NL
Sbjct: 97  DTTFAEIEKEFGHKVCQIVQEVTDDKTLSKAERKRLQIEHAPNISREAKLVKLADKLYNL 156

Query: 207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAKYC 255
           RD+E+S+P+ WT ER  +YF WA+ V+ G R TN  +E ELD LFA+ C
Sbjct: 157 RDLEKSVPIGWTNERVKEYFEWAKAVIDGCRQTNPALERELDILFARNC 205

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|113931302|ref|NP_001039099.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 [Xenopus (Silurana) tropicalis] gi|119370654|sp|Q28C98.1|MESH1_XENTR RecName: Full=Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1; AltName: Full=HD domain-containing protein 3; AltName: Full=Metazoan SpoT homolog 1; Short=MESH1; AltName: Full=Penta-phosphate guanosine-3'-pyrophosphohydrolase; Short=(ppGpp)ase gi|89268951|emb|CAJ81555.1| novel HD domain containing protein [Xenopus (Silurana) tropicalis] gi|195539934|gb|AAI67936.1| novel HD domain containing protein [Xenopus (Silurana) tropicalis]

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 101/172 (58%), Positives = 134/172 (77%), Gaps = 1/172 (0%)

Query: 80  SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
           S DA + I++A +FA+ KH  QRRKDPE TPYI HP+ VA IL+H G +++  V+ +ALL
Sbjct: 2   SSDAAL-ILEAANFAAEKHKQQRRKDPEKTPYINHPLGVARILSHEGGITDTAVLQAALL 60

Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKL 199
           HDTVEDT+TTFEEIE  FG  VR++VEE+TD+K + + ERKR Q+ HAPH S +AKLVKL
Sbjct: 61  HDTVEDTNTTFEEIELHFGQDVRNIVEEVTDDKTLPKMERKRLQMEHAPHCSQKAKLVKL 120

Query: 200 ADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
           ADKL+NLRD++R  P  W+E+R  +YF WA +VV+GLRGTN+ +E +LD +F
Sbjct: 121 ADKLYNLRDLKRCTPEGWSEQRVQEYFQWASEVVKGLRGTNSILEGKLDHMF 172

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350420283|ref|XP_003492460.1| PREDICTED: guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1-like [Bombus impatiens]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/167 (59%), Positives = 129/167 (77%)

Query: 87  IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
           ++K  +F + KH  QRRKD   TPYI HP+ VA+IL   G + +PVVII+ALLHDTVEDT
Sbjct: 37  VIKCANFVAIKHKDQRRKDENETPYINHPIGVANILVQEGNIHDPVVIIAALLHDTVEDT 96

Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
           DTTFEEIE +FG  VR++V+ELTD+K + + ERKR QI +AP  SH+AKLVKLADKL+NL
Sbjct: 97  DTTFEEIETQFGTEVRNIVKELTDDKSLPKVERKRLQIENAPKCSHKAKLVKLADKLYNL 156

Query: 207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAK 253
           RD+++++PV W+E+R  +YF WA+ VV G R TN  +E ELD +FAK
Sbjct: 157 RDLQKAIPVGWSEDRVKEYFKWAKAVVDGCRRTNFNLERELDLIFAK 203

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551648|ref|XP_001600589.1| PREDICTED: guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1-like [Nasonia vitripennis]

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 99/172 (57%), Positives = 130/172 (75%)

Query: 87  IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
           +VK  +FA+ KH  QRR + E TPYI HP+ VA+IL   G+V +P VI++ALLHDTVEDT
Sbjct: 33  VVKCANFAAIKHSRQRRLNKEKTPYINHPIGVANILVEEGEVCDPAVIVAALLHDTVEDT 92

Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
           DTTFEEIE  FG ++R +VEE+TD+K + + ERKR QI HAP+SSHEAKLVKLADKL+NL
Sbjct: 93  DTTFEEIEEHFGAKIRKIVEEVTDDKSLPKLERKRLQIEHAPNSSHEAKLVKLADKLYNL 152

Query: 207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAKYCTPR 258
           RD+++ +P  W+ ER  +YF WA+ VV GL+GTN  +E  LD +F K+   +
Sbjct: 153 RDLKKEIPEGWSIERVNEYFKWAKLVVDGLKGTNIKLEKLLDDMFIKHSETK 204

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713287|ref|XP_003395176.1| PREDICTED: guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1-like [Bombus terrestris]

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 128/167 (76%)

Query: 87  IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
           ++K  +FA+ KH  QRRKD   TPYI HP+ VA+IL   G + +PVVII+ALLHDTVEDT
Sbjct: 37  VIKCANFAAIKHKDQRRKDENETPYINHPIGVANILVQEGSIHDPVVIIAALLHDTVEDT 96

Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
           DTTFEEIE +FG  V  +V+ELTD+K + + ERKR QI +AP  SH+AKL+KLADKL+NL
Sbjct: 97  DTTFEEIETQFGTEVCKIVKELTDDKSLPKVERKRLQIENAPKCSHKAKLIKLADKLYNL 156

Query: 207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAK 253
           RD+++++PV W+E+R  +YF WA+ VV G R TN  +E ELD +FAK
Sbjct: 157 RDLQKAIPVGWSEDRVREYFKWAKAVVDGCRRTNFNLERELDLIFAK 203

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|57048362|ref|XP_545862.1| PREDICTED: guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 [Canis lupus familiaris]

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 124/166 (74%)

Query: 86  NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVED 145
            +V+A DFA+ KH  QRRKDPEGTPYI HP+ VA ILTH   +++ VV+ +ALLHDTVED
Sbjct: 7   QLVEAADFAARKHRLQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVED 66

Query: 146 TDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHN 205
           TDTT +E+E  FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKL+N
Sbjct: 67  TDTTLDEVELHFGTQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPAAKLVKLADKLYN 126

Query: 206 LRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
           LRD+ R  P  W+E R  +YF WA  VV+GL+GTN P+E  L  LF
Sbjct: 127 LRDLNRCTPEGWSERRVQEYFEWAAHVVKGLQGTNPPLEEALKQLF 172

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410960536|ref|XP_003986845.1| PREDICTED: guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 [Felis catus]

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 123/166 (74%)

Query: 86  NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVED 145
            +V+A DFA+ KH  QRRKDPEGTPYI HP+ VA ILTH   V++ VV+ +ALLHDTVED
Sbjct: 7   QLVEAADFAARKHRLQRRKDPEGTPYINHPIGVARILTHEAGVTDIVVLQAALLHDTVED 66

Query: 146 TDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHN 205
           TDTT +E+E  FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKL+N
Sbjct: 67  TDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYN 126

Query: 206 LRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
           LRD+ R  P  W+E R  +YF WA  VV+GLRGTN  +E  L  LF
Sbjct: 127 LRDLNRCTPEGWSEHRVQEYFEWAAQVVKGLRGTNRQLEEALKQLF 172

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354503310|ref|XP_003513724.1| PREDICTED: guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1-like [Cricetulus griseus] gi|344256695|gb|EGW12799.1| HD domain-containing protein 3 [Cricetulus griseus]

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/168 (58%), Positives = 125/168 (74%)

Query: 84  IMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTV 143
           +  +++A DFA+ KH  QRRKDPEGTPYI HP+ VA ILTH   V++ VV+ +ALLHDTV
Sbjct: 5   VAQLLEAADFAAQKHRQQRRKDPEGTPYINHPIGVARILTHEAGVTDVVVLQAALLHDTV 64

Query: 144 EDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKL 203
           EDTDTT +E+E  FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKL
Sbjct: 65  EDTDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQQVEQAPHSSPGAKLVKLADKL 124

Query: 204 HNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
           +NLRD+ R  P  W+E+R  +YF WA  VV+GL+GTN  +E  L  LF
Sbjct: 125 YNLRDLNRCTPQGWSEQRVQEYFEWAAQVVKGLQGTNQQLEEALKQLF 172

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|21312092|ref|NP_081088.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 [Mus musculus] gi|81904689|sp|Q9D114.1|MESH1_MOUSE RecName: Full=Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1; AltName: Full=HD domain-containing protein 3; AltName: Full=Metazoan SpoT homolog 1; Short=MESH1; AltName: Full=Penta-phosphate guanosine-3'-pyrophosphohydrolase; Short=(ppGpp)ase gi|12835118|dbj|BAB23158.1| unnamed protein product [Mus musculus] gi|54887363|gb|AAH38310.1| HD domain containing 3 [Mus musculus] gi|148675053|gb|EDL07000.1| HD domain containing 3, isoform CRA_c [Mus musculus]

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 124/166 (74%)

Query: 86  NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVED 145
            +++A DFA+HKH  QRRKDPEGTPYI HP+ VA ILTH   +++ VV+ +ALLHDTVED
Sbjct: 7   QLLEAADFAAHKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVED 66

Query: 146 TDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHN 205
           TDTT +E+E  FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKL+N
Sbjct: 67  TDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQQVEQAPHSSPGAKLVKLADKLYN 126

Query: 206 LRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
           LRD+ R  P  W+E R  +YF WA  VV+GL+GTN  +E  L  LF
Sbjct: 127 LRDLNRCTPTGWSEHRVQEYFEWAAQVVKGLQGTNQQLEEALKQLF 172

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383861612|ref|XP_003706279.1| PREDICTED: guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1-like [Megachile rotundata]

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 94/166 (56%), Positives = 128/166 (77%)

Query: 87  IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
           I+K  +FA+ KH +++RKD EGTPYI HP+ VA+IL   G++ +PVVI+SALLHDTVEDT
Sbjct: 37  IIKCVNFAAIKHKYEKRKDAEGTPYINHPIGVANILIQEGQIYDPVVIVSALLHDTVEDT 96

Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
           DTT  EIE +FG  V ++V+E+TD+K + + ERKR QI ++P  S++AKLVKLADKL+NL
Sbjct: 97  DTTLAEIEGQFGTEVCNIVKEVTDDKSLPKQERKRLQIENSPKLSYKAKLVKLADKLYNL 156

Query: 207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFA 252
           RD+E++ PV WT ER  +YF W++ V+ G R TN  +E ELD +FA
Sbjct: 157 RDLEQNTPVGWTPERVKEYFKWSKAVIDGCRRTNLNLETELDKIFA 202

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
UNIPROTKB|E2QTM0	179	HDDC3 "Uncharacterized protein	0.625	0.921	0.533	1.2e-42
MGI|MGI:1915945	179	Hddc3 "HD domain containing 3"	0.625	0.921	0.527	5.2e-42
UNIPROTKB|F1MR07	179	HDDC3 "Uncharacterized protein	0.636	0.938	0.517	1.1e-41
RGD|1311839	179	Hddc3 "HD domain containing 3"	0.625	0.921	0.527	1.4e-41
UNIPROTKB|Q8N4P3	179	HDDC3 "Guanosine-3',5'-bis(dip	0.625	0.921	0.521	4.6e-41
ZFIN|ZDB-GENE-050417-377	180	hddc3 "HD domain containing 3"	0.625	0.916	0.496	7.5e-41
UNIPROTKB|F1RMH8	179	HDDC3 "Uncharacterized protein	0.636	0.938	0.5	5.3e-40
WB|WBGene00014148	229	ZK909.3 [Caenorhabditis elegan	0.632	0.729	0.434	1.9e-35
FB|FBgn0039650	179	Mesh1 "Metazoan SpoT homolog-1	0.621	0.916	0.451	2.8e-34
DICTYBASE|DDB_G0287233	208	spoT "guanosine polyphosphate	0.632	0.802	0.416	9.8e-32

UNIPROTKB|E2QTM0 HDDC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 88/165 (53%), Positives = 111/165 (67%)

Query:    87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXXXXX 146
             +V+A DFA+ KH  QRRKDPEGTPYI HP+ VA ILTH   +++ VV+ +ALLH      
Sbjct:     8 LVEAADFAARKHRLQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDT 67

Query:   147 XXXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
                       FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKL+NL
Sbjct:    68 DTTLDEVELHFGTQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPAAKLVKLADKLYNL 127

Query:   207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
             RD+ R  P  W+E R  +YF WA  VV+GL+GTN P+E  L  LF
Sbjct:   128 RDLNRCTPEGWSERRVQEYFEWAAHVVKGLQGTNPPLEEALKQLF 172

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:1915945 Hddc3 "HD domain containing 3" [Mus musculus (taxid:10090)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 87/165 (52%), Positives = 111/165 (67%)

Query:    87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXXXXX 146
             +++A DFA+HKH  QRRKDPEGTPYI HP+ VA ILTH   +++ VV+ +ALLH      
Sbjct:     8 LLEAADFAAHKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDT 67

Query:   147 XXXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
                       FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKL+NL
Sbjct:    68 DTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQQVEQAPHSSPGAKLVKLADKLYNL 127

Query:   207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
             RD+ R  P  W+E R  +YF WA  VV+GL+GTN  +E  L  LF
Sbjct:   128 RDLNRCTPTGWSEHRVQEYFEWAAQVVKGLQGTNQQLEEALKQLF 172

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1MR07 HDDC3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 87/168 (51%), Positives = 111/168 (66%)

Query:    84 IMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXX 143
             +  +++A DFA+ KH  QRRKDPEGTPYI HP+ VA ILTH   +++ VV+ +ALLH   
Sbjct:     5 VAQLLEAADFAARKHQRQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTV 64

Query:   144 XXXXXXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKL 203
                          FG +VR +VEE+TD+K + + ERKR Q+ HAP SS  AKLVKLADKL
Sbjct:    65 EDTDTTLDEVELHFGDQVRRLVEEVTDDKTLPKLERKRLQVEHAPQSSPGAKLVKLADKL 124

Query:   204 HNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
             +NLRD+ R  P  WTE R  +YF WA  VV+GL+GTN  +E  L  LF
Sbjct:   125 YNLRDLNRCTPEGWTEHRVQEYFEWAAQVVKGLQGTNRQLEEALRQLF 172

GO:0046872 "metal ion binding" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

RGD|1311839 Hddc3 "HD domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 87/165 (52%), Positives = 110/165 (66%)

Query:    87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXXXXX 146
             +++A DFA+ KH  QRRKDPEGTPYI HP+ VA ILTH   +++ VV+ +ALLH      
Sbjct:     8 LLEAADFAAQKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDT 67

Query:   147 XXXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
                       FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKLHNL
Sbjct:    68 DTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQQVEQAPHSSPGAKLVKLADKLHNL 127

Query:   207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
             RD+ R  P  W+E R  +YF WA  VV+GL+GTN  +E  L  LF
Sbjct:   128 RDLNRCTPKGWSEHRVQEYFEWAAQVVKGLQGTNQQLEEALKQLF 172

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q8N4P3 HDDC3 "Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1" [Homo sapiens (taxid:9606)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 86/165 (52%), Positives = 110/165 (66%)

Query:    87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXXXXX 146
             +++A DFA+ KH  QRRKDPEGTPYI HP+ VA ILTH   +++ VV+ +ALLH      
Sbjct:     8 LLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDT 67

Query:   147 XXXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
                       FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKL+NL
Sbjct:    68 DTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYNL 127

Query:   207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
             RD+ R  P  W+E R  +YF WA  VV+GL+GTN  +E  L  LF
Sbjct:   128 RDLNRCTPEGWSEHRVQEYFEWAAQVVKGLQGTNRQLEEALKHLF 172

GO:0046872 "metal ion binding" evidence=IEA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IEA

ZFIN|ZDB-GENE-050417-377 hddc3 "HD domain containing 3" [Danio rerio (taxid:7955)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 82/165 (49%), Positives = 110/165 (66%)

Query:    87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXXXXX 146
             +++  +FA+ KH  QR KDPEGTPYI HP+ VA IL+H G++++  VI +ALLH      
Sbjct:     9 LLETVNFAAEKHRNQRHKDPEGTPYINHPIGVARILSHEGEITDVEVIQAALLHDTVEDT 68

Query:   147 XXXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
                       FG  V  +V+ +TD+K + + ER+R Q+ HAPH SH+AKLVKLADKL+NL
Sbjct:    69 DTTFEELESVFGATVARIVQGVTDDKSLPKAERERQQVEHAPHCSHQAKLVKLADKLYNL 128

Query:   207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
             RD+ R  P  W+ +R  +YF WA  VV+GLRGTNA IE +L  LF
Sbjct:   129 RDLNRCTPEGWSAQRVQEYFEWASQVVKGLRGTNAAIEEKLQQLF 173

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RMH8 HDDC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 84/168 (50%), Positives = 110/168 (65%)

Query:    84 IMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXX 143
             +  +++A DFA+ KH  QRRKDPEGTPYI HP+ VA ILT    +++ VV+ +ALLH   
Sbjct:     5 VAQLLEAADFAARKHQRQRRKDPEGTPYINHPIGVARILTREAGITDIVVLQAALLHDTV 64

Query:   144 XXXXXXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKL 203
                          FG +VR +VEE+TD+K + + ERK+ Q+  APHSS  AKLVKLADKL
Sbjct:    65 EDTDTTLDEVELHFGVQVRRLVEEVTDDKTLPKLERKQLQVEQAPHSSPGAKLVKLADKL 124

Query:   204 HNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
             +NLRD+ R  P  W+E R  +YF WA  VV+GL+GTN  +E  L  LF
Sbjct:   125 YNLRDLNRCTPEGWSERRVQEYFEWAAQVVKGLQGTNQQLEEALKQLF 172

GO:0003824 "catalytic activity" evidence=IEA

WB|WBGene00014148 ZK909.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 73/168 (43%), Positives = 108/168 (64%)

Query:    87 IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXXXXX 146
             ++KATDFA+ +H  Q+RKD   TPYI HP+ V +ILT+  KV +PV + +A+LH      
Sbjct:    61 VLKATDFAARRHRHQKRKD-NATPYINHPIGVMYILTNEAKVYDPVTLAAAVLHDVVEDT 119

Query:   147 XXXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
                       FG  V  VV+E TD+K++ + ERK+ QI +    SH+AKLV LADKL+NL
Sbjct:   120 KTTPEEIQQEFGNEVFQVVKECTDDKNLAKAERKKLQIENYGKHSHQAKLVHLADKLYNL 179

Query:   207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAKY 254
             RD+ER  P+ W ++R  +YF W+R+V+  ++GTN  +E  LD +  ++
Sbjct:   180 RDLERKAPIGWDKKRVNEYFKWSREVIGEMKGTNESLEYALDDVINRH 227

GO:0003824 "catalytic activity" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

FB|FBgn0039650 Mesh1 "Metazoan SpoT homolog-1" [Drosophila melanogaster (taxid:7227)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 74/164 (45%), Positives = 105/164 (64%)

Query:    88 VKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXXXXXX 147
             ++   +A+ KH  QRRKDP+ TPY+ H + V+ IL+    +++  V+++ALLH       
Sbjct:    10 MECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTD 69

Query:   148 XXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLR 207
                      FGP V  +V E+TD+K + + ERKR QI +A  SS  AKL+KLADKL NLR
Sbjct:    70 ASFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLR 129

Query:   208 DIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
             D++ + P  WT+ER+ QYF WA+ VV  LRGTNA +E +LD +F
Sbjct:   130 DLQVNTPTGWTQERRDQYFVWAKKVVDNLRGTNANLELKLDEIF 173

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0042594 "response to starvation" evidence=IMP

GO:0015971 "guanosine tetraphosphate catabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

DICTYBASE|DDB_G0287233 spoT "guanosine polyphosphate pyrophosphohydrolase" [Dictyostelium discoideum (taxid:44689)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 70/168 (41%), Positives = 104/168 (61%)

Query:    84 IMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXX 143
             ++ ++K+ DF+  KH  QRRKD   TPYI HP+ VA+ L   G V +  ++ +A+LH   
Sbjct:     6 LIQLMKSIDFSCKKHRDQRRKDSHSTPYINHPIGVAYNLIKAG-VYDSDILQAAILHDTI 64

Query:   144 XXXXXXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKL 203
                          FG RV S V ++TD+K +++ ERK+ QI HA H  +E+KLVK+ADKL
Sbjct:    65 EDTQTTKEEIIKEFGERVASYVMDVTDDKSLSKQERKKHQIEHALHIQNESKLVKMADKL 124

Query:   204 HNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
              NLRDI+ + P +W+ +    YF WA+ V+  LRG N  +E++LD +F
Sbjct:   125 FNLRDIQTNAPPSWSVDVIQGYFVWAKAVINNLRGQNQWLESQLDEIF 172

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8N4P3	MESH1_HUMAN	3, ., 1, ., 7, ., 2	0.5773	0.6363	0.9385	yes	N/A
Q568P1	MESH1_DANRE	3, ., 1, ., 7, ., 2	0.5757	0.625	0.9166	yes	N/A
Q28C98	MESH1_XENTR	3, ., 1, ., 7, ., 2	0.5872	0.6477	0.9553	yes	N/A
Q9D114	MESH1_MOUSE	3, ., 1, ., 7, ., 2	0.5903	0.6287	0.9273	yes	N/A
Q9VAM9	MESH1_DROME	3, ., 1, ., 7, ., 2	0.5030	0.625	0.9217	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	264
pfam13328	156	pfam13328, HD_4, HD domain	5e-29
COG0317	701	COG0317, SpoT, Guanosine polyphosphate pyrophospho	2e-26
TIGR00691	683	TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp	4e-22
PRK11092	702	PRK11092, PRK11092, bifunctional (p)ppGpp syntheta	2e-14
cd00077	145	cd00077, HDc, Metal dependent phosphohydrolases wi	8e-07
smart00471	124	smart00471, HDc, Metal dependent phosphohydrolases	4e-05
pfam01966	111	pfam01966, HD, HD domain	1e-04

>gnl|CDD|222047 pfam13328, HD_4, HD domain

 Score =  107 bits (269), Expect = 5e-29
 Identities = 55/136 (40%), Positives = 70/136 (51%), Gaps = 15/136 (11%)

Query: 90  ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTT 149
           A  FA+  H  QR+    G PY+ H + VA IL  LG   +   + +ALLHD VEDT T 
Sbjct: 1   ALAFAAKLHAGQRKGT--GEPYLSHALEVAAILAELG--LDEETLAAALLHDVVEDTGTL 56

Query: 150 FEEIEREFGPRVRSVVEELTDNKHMTR-----DERKRCQI------LHAPHSSHEAKLVK 198
            EEI   FGP V  +VE +T  K + R      ERK  Q+      L A        L+K
Sbjct: 57  EEEIRERFGPEVARLVEGVTKLKRIRRLAEDWAERKAEQLENLRKMLLAMADDIRVVLIK 116

Query: 199 LADKLHNLRDIERSLP 214
           LAD+LHNLR +  + P
Sbjct: 117 LADRLHNLRSLAAAKP 132

HD domains are metal dependent phosphohydrolases. Length = 156

>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

 Score =  107 bits (269), Expect = 2e-26
 Identities = 56/159 (35%), Positives = 75/159 (47%), Gaps = 19/159 (11%)

Query: 79  HSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISAL 138
           + P   + + KA  +A   H  Q RK   G PYI HP+ VA IL  L    +   + +AL
Sbjct: 19  YLPPVDIELKKAWYYARQAHGGQTRKS--GEPYISHPLEVAEILAELH--MDMETLAAAL 74

Query: 139 LHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNK-------HMTRDERKRCQILHAPHSS 191
           LHDT+EDT  T E IE  FG  V  +VE +T  K                 ++L A    
Sbjct: 75  LHDTIEDTPVTEELIEEIFGKEVAKLVEGVTKLKKIGQLSSEEELQAENLRKMLLAMVKD 134

Query: 192 HEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWAR 230
               L+KLAD+LHNLR ++     N  EE++      AR
Sbjct: 135 IRVVLIKLADRLHNLRTLK-----NLDEEKRR---RIAR 165

Length = 701

>gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family

 Score = 95.2 bits (237), Expect = 4e-22
 Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 17/136 (12%)

Query: 90  ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTT 149
           A + A   H  Q+RK   G PYI HP+AVA IL  LG   +   + +ALLHD +EDT  T
Sbjct: 1   ALEIAKDLHEGQKRK--SGEPYIIHPLAVALILAELG--MDEETVCAALLHDVIEDTPVT 56

Query: 150 FEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPH-------SSHE--AKLVKLA 200
            EEIE EFG  V  +V+ +T    +T+ ++K  Q L A +        + +    ++KLA
Sbjct: 57  EEEIEEEFGEEVAELVDGVTK---ITKLKKKSRQELQAENFRKMILAMAQDIRVIVIKLA 113

Query: 201 DKLHNLRDIERSLPVN 216
           D+LHN+R ++  LP  
Sbjct: 114 DRLHNMRTLD-FLPPE 128

The functions of E. coli RelA and SpoT differ somewhat. RelA (EC 2.7.6.5) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (EC 3.1.7.2) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species [Cellular processes, Adaptations to atypical conditions]. Length = 683

>gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 12/134 (8%)

Query: 81  PDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLH 140
            D I  + +A   A   H  Q R    G PYI HPVAVA IL  +    +   +++ALLH
Sbjct: 17  EDQIKRLRQAYLVARDAHEGQTRS--SGEPYITHPVAVACILAEMRL--DYETLMAALLH 72

Query: 141 DTVEDTDTTFEEIEREFGPRVRSVVEELTD-NKHMTRDERKRCQ------ILHAPHSSHE 193
           D +EDT  T++++E+ FG  V  +VE ++  +K   RD +K  Q      ++ A      
Sbjct: 73  DVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRD-KKEAQAENFRKMIMAMVQDIR 131

Query: 194 AKLVKLADKLHNLR 207
             L+KLAD+ HN+R
Sbjct: 132 VILIKLADRTHNMR 145

Length = 702

>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif

 Score = 47.3 bits (112), Expect = 8e-07
 Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 27/144 (18%)

Query: 110 PYIEHPVAVAHILTHLGKVSNP------VVIISALLHDTVEDTDTTF------------- 150
              EH + VA +   L +          ++ ++ALLHD  +                   
Sbjct: 2   HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPGTPDAITEEESELEKDHA 61

Query: 151 ----EEIEREFGPRVRSVVEEL---TDNKHMTR-DERKRCQILHAPHSSHEAKLVKLADK 202
               E +       V  +++EL    D  H  R D       L     + EA++VKLAD+
Sbjct: 62  IVGAEILRELLLEEVIKLIDELILAVDASHHERLDGLGYPDGLKGEEITLEARIVKLADR 121

Query: 203 LHNLRDIERSLPVNWTEERKTQYF 226
           L  LR   R       EE   +  
Sbjct: 122 LDALRRDSREKRRRIAEEDLEELL 145

Length = 145

>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 110 PYIEHPVAVAH----ILTHLGKVSNPVVIISALLHDTVEDTDT------TFEEIEREFGP 159
              EH + VA     +   LG +   +++++ALLHD  +          T    +  F  
Sbjct: 4   HVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIG 63

Query: 160 RVRSVVEELTD-----NKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLP 214
               + EE         +       +R   L     + EA++VK+AD+L  LR   R   
Sbjct: 64  AEILLEEEEPRILEEILRTAILSHHERPDGLRGEPITLEARIVKVADRLDALRADRRYRR 123

Query: 215 V 215
           V
Sbjct: 124 V 124

Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit). Length = 124

>gnl|CDD|216815 pfam01966, HD, HD domain

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 15/111 (13%)

Query: 111 YIEHPVAVAHILTHLGKVSNPV----VIISALLHDTVEDT----DTTFEEIEREFGPRVR 162
            +EH + VA +   L +    +    ++++ALLHD  +           EI         
Sbjct: 1   VLEHSLRVALLARELAEELGELDRELLLLAALLHDIGKPPFGDEKPLLFEIFLGHAVVGA 60

Query: 163 SVVEELTDNK------HMTRDERKRCQI-LHAPHSSHEAKLVKLADKLHNL 206
            ++ EL           +  +  +  +   +    S EA++VKLAD+L  L
Sbjct: 61  EILRELEKPLGLEDVLKLILEHHESWEGAGYPEEISLEARIVKLADRLDAL 111

HD domains are metal dependent phosphohydrolases. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	100.0
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	100.0
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	100.0
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	100.0
KOG1157|consensus	543		100.0
PF13328	153	HD_4: HD domain; PDB: 3NR1_B.	99.98
TIGR03276	179	Phn-HD phosphonate degradation operons associated	98.14
smart00471	124	HDc Metal dependent phosphohydrolases with conserv	95.22
PF01966	122	HD: HD domain; InterPro: IPR006674 This domain is	94.32
cd00077	145	HDc Metal dependent phosphohydrolases with conserv	93.17
PRK12703	339	tRNA 2'-O-methylase; Reviewed	91.39
COG1418	222	Predicted HD superfamily hydrolase [General functi	90.33
PRK03826	195	5'-nucleotidase; Provisional	88.28
PRK10119	231	putative hydrolase; Provisional	88.26
TIGR03401	228	cyanamide_fam HD domain protein, cyanamide hydrata	88.17
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	86.2
COG1896	193	Predicted hydrolases of HD superfamily [General fu	83.65

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=100.00  E-value=1.7e-43  Score=358.18  Aligned_cols=176  Identities=14%  Similarity=0.197  Sum_probs=161.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHH
Q psy8734          77 GMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIERE  156 (264)
Q Consensus        77 ~~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~  156 (264)
                      .|+ +++.+.+.+|+.||.++|.|  |++  |+||+.||++||.||+++ | +|.++++||||||++|||++|.++|++.
T Consensus        26 ~~~-~~~~~~i~~A~~~a~~~H~g--r~s--Gepyi~Hpl~vA~iLa~~-~-~D~~ti~AaLLHD~vedt~~t~e~i~~~   98 (743)
T PRK10872         26 ITS-QQSCERLAETWAYCLQQTQG--HPD--ASLLLWRGVEMVEILSTL-S-MDIDTLRAALLFPLADANVVSEDVLRES   98 (743)
T ss_pred             hhh-HHHHHHHHHHHHHHHHhccC--CCC--CChhhhhHHHHHHHHHHc-C-CCHHHHHHHHhhhhHhcCCCCHHHHHHH
Confidence            577 88999999999999999999  664  999999999999999985 4 8999999999999999999999999999


Q ss_pred             hCHHHHHHHHHhhcCCCCCHH------HHHHHHHHHcCC------CCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHH
Q psy8734         157 FGPRVRSVVEELTDNKHMTRD------ERKRCQILHAPH------SSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQ  224 (264)
Q Consensus       157 FG~~Va~LV~gLTk~~~l~~~------~r~~~q~e~lr~------~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~e  224 (264)
                      ||++|+.||+||||+..+...      .+...|.+++|+      .|+||+||||||||||||++..++++++.+ .|+|
T Consensus        99 FG~~Va~lVdgvtKl~~i~~~~~~~~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~~-iA~E  177 (743)
T PRK10872         99 VGKSIVNLIHGVRDMDAIRQLKATHNDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVL-AAKE  177 (743)
T ss_pred             HCHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHHH-HHHH
Confidence            999999999999999987541      234458888876      899999999999999999999999888764 4999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcccccc
Q psy8734         225 YFNWARDVVQGLRGTNAPIEAELDALFAKYCTPREGRE  262 (264)
Q Consensus       225 y~~~~a~La~~l~G~~~~lk~eLedl~~r~l~p~~y~~  262 (264)
                      ++++|+|||+|| |+ +++||||||||||||+|+.|++
T Consensus       178 Tl~IyAPlA~RL-Gi-~~iK~ELEDL~f~~l~P~~Y~~  213 (743)
T PRK10872        178 CTNIYAPLANRL-GI-GQLKWELEDYCFRYLHPDEYKR  213 (743)
T ss_pred             HHHHHHHHHHHh-Ch-HHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999999 99 9999999999999999999975

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=100.00  E-value=1.9e-42  Score=350.23  Aligned_cols=180  Identities=29%  Similarity=0.414  Sum_probs=165.4

Q ss_pred             CCCCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHH
Q psy8734          76 SGMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIER  155 (264)
Q Consensus        76 ~~~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~  155 (264)
                      ..|+++++.+.+.+|+.||.++|.||+|++  |+||+.|+++||.+|+++ | +|.++++||||||++|||++|.++|++
T Consensus        12 ~~~~~~~~~~~l~~A~~~A~~aH~gQ~rks--GePYi~Hpl~VA~iLa~l-~-~D~~ti~AaLLHDvvEDt~~t~e~i~~   87 (702)
T PRK11092         12 QTYLPEDQIKRLRQAYLVARDAHEGQTRSS--GEPYITHPVAVACILAEM-R-LDYETLMAALLHDVIEDTPATYQDMEQ   87 (702)
T ss_pred             HhhCCHHHHHHHHHHHHHHHHhccCCcCCC--CCcHHHHHHHHHHHHHHc-C-CCHHHHHHhcccchhhhCCCCHHHHHH
Confidence            368899999999999999999999999985  999999999999999985 4 799999999999999999999999999


Q ss_pred             HhCHHHHHHHHHhhcCCCCCHHHHHHHHHHHcCC------CCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHH
Q psy8734         156 EFGPRVRSVVEELTDNKHMTRDERKRCQILHAPH------SSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWA  229 (264)
Q Consensus       156 ~FG~~Va~LV~gLTk~~~l~~~~r~~~q~e~lr~------~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~  229 (264)
                      .||++|+.+|+||||+..+++..+...|.+++++      .|+||++||||||+||||++..++++++.+ .++|++++|
T Consensus        88 ~FG~~Va~lV~gvTk~~~l~~~~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~-iA~ETl~iy  166 (702)
T PRK11092         88 LFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRR-IARETLEIY  166 (702)
T ss_pred             HHCHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHH-HHHHHHHHH
Confidence            9999999999999999988765555557777654      799999999999999999999998887654 599999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcCcccccc
Q psy8734         230 RDVVQGLRGTNAPIEAELDALFAKYCTPREGRE  262 (264)
Q Consensus       230 a~La~~l~G~~~~lk~eLedl~~r~l~p~~y~~  262 (264)
                      +|||+|| |+ +++||||||||||||+|+.|++
T Consensus       167 aPlA~rl-Gi-~~ik~eLedL~f~~l~P~~y~~  197 (702)
T PRK11092        167 SPLAHRL-GI-HHIKTELEELGFEALYPNRYRV  197 (702)
T ss_pred             HHHHHHh-Ch-HHHHHHHHHHHHHhhCHHHHHH
Confidence            9999999 99 8899999999999999999974

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=100.00  E-value=7.2e-42  Score=342.54  Aligned_cols=178  Identities=33%  Similarity=0.422  Sum_probs=157.3

Q ss_pred             CCCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHH
Q psy8734          77 GMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIERE  156 (264)
Q Consensus        77 ~~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~  156 (264)
                      .|.++.+.. +.+|+.||.++|.+|.|++  |+||+.||++||.+|+++.  +|.++++||||||++|||++|.++|++.
T Consensus        18 ~~~~~~~~~-l~kA~~~A~q~H~~q~r~S--GePYi~Hpl~Va~iLael~--~d~~tl~AaLLHD~vEDt~~t~e~i~~~   92 (701)
T COG0317          18 TYLPPVDIE-LKKAWYYARQAHGGQTRKS--GEPYISHPLEVAEILAELH--MDMETLAAALLHDTIEDTPVTEELIEEI   92 (701)
T ss_pred             hcCChHHHH-HHHHHHHHHHHhHhhcCcC--CCchhhCHHHHHHHHHHcc--CCHHHHHHHHccchHhcCCCCHHHHHHH
Confidence            444445545 9999999999999999985  9999999999999999864  7999999999999999999999999999


Q ss_pred             hCHHHHHHHHHhhcCCCC-CHHHHHHHHHHHcC------CCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHH
Q psy8734         157 FGPRVRSVVEELTDNKHM-TRDERKRCQILHAP------HSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWA  229 (264)
Q Consensus       157 FG~~Va~LV~gLTk~~~l-~~~~r~~~q~e~lr------~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~  229 (264)
                      ||++|++||+||||+..+ ........|.++++      ..|+||++|||||||||||++...+++++.+ .+++++++|
T Consensus        93 FG~eVa~LV~GvTkl~~i~~~~~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~~r-iakETl~Iy  171 (701)
T COG0317          93 FGKEVAKLVEGVTKLKKIGQLSSEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRR-IARETLDIY  171 (701)
T ss_pred             HCHHHHHHHhhHHHhhhhhccCccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHHHH-HHHHHHHHH
Confidence            999999999999999998 33333334666654      4899999999999999999999965666654 489999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcCcccccc
Q psy8734         230 RDVVQGLRGTNAPIEAELDALFAKYCTPREGRE  262 (264)
Q Consensus       230 a~La~~l~G~~~~lk~eLedl~~r~l~p~~y~~  262 (264)
                      +|||+|| |+ +++||||||++|||++|++|+.
T Consensus       172 APLA~RL-Gi-~~iK~ELEDlsFr~l~P~~Y~~  202 (701)
T COG0317         172 APLAHRL-GI-GQIKWELEDLSFRYLHPDQYKR  202 (701)
T ss_pred             HHHHHHh-hh-HHHHHHHHhhhhhhhChHHHHH
Confidence            9999999 99 9999999999999999999984

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=100.00  E-value=1.1e-39  Score=329.93  Aligned_cols=166  Identities=35%  Similarity=0.500  Sum_probs=152.4

Q ss_pred             HHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHHhCHHHHHHHHHhh
Q psy8734          90 ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELT  169 (264)
Q Consensus        90 Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~FG~~Va~LV~gLT  169 (264)
                      |+.||.++|.||+|++  |.||+.|+++||.+|+++ | +|.++++||||||++|||++|.++|++.||++|+++|++||
T Consensus         1 A~~~A~~aH~gQ~rks--g~PYi~Hpl~VA~iL~~~-~-~D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~vT   76 (683)
T TIGR00691         1 ALEIAKDLHEGQKRKS--GEPYIIHPLAVALILAEL-G-MDEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGVT   76 (683)
T ss_pred             CHHHHHHhcccCcCCC--CCcHHHHHHHHHHHHHHh-C-CCHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHHH
Confidence            6789999999999985  999999999999999985 4 79999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHcC------CCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHH
Q psy8734         170 DNKHMTRDERKRCQILHAP------HSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPI  243 (264)
Q Consensus       170 k~~~l~~~~r~~~q~e~lr------~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a~La~~l~G~~~~l  243 (264)
                      |++.+++.++...|.++++      ..|+||++||||||+||||++..++++++.+ .++|++++|+|||+|| |+ +++
T Consensus        77 k~~~~~~~~~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~-iA~Et~~iyaPlA~rL-G~-~~i  153 (683)
T TIGR00691        77 KITKLKKKSRQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKR-IAKETLEIYAPLAHRL-GM-SSI  153 (683)
T ss_pred             HhcccccchhhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHH-HHHHHHHHHHHHHHHh-Ch-HHH
Confidence            9999887666666777765      4799999999999999999999998887654 4899999999999999 99 899


Q ss_pred             HHHHHHHHHhhcCcccccc
Q psy8734         244 EAELDALFAKYCTPREGRE  262 (264)
Q Consensus       244 k~eLedl~~r~l~p~~y~~  262 (264)
                      ||||||||||||+|+.|++
T Consensus       154 k~eLedl~f~~l~p~~y~~  172 (683)
T TIGR00691       154 KTELEDLSFKYLYPKEYEN  172 (683)
T ss_pred             HHHHHHHHHHhcCHHHHHH
Confidence            9999999999999999974

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>KOG1157|consensus

Probab=100.00  E-value=1.1e-33  Score=265.99  Aligned_cols=184  Identities=34%  Similarity=0.463  Sum_probs=166.6

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHH
Q psy8734          73 DSDSGMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEE  152 (264)
Q Consensus        73 ~~~~~~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~ee  152 (264)
                      ...+-|++.-+...+-+|+.+|+.+|.+|.|++ .|+||+.|++.++.||+++.  +|..+++||+|||+|+|+..|.++
T Consensus        63 R~~~~~~~t~~s~lv~KAl~~Aa~~HR~Q~Rad-~~rPY~nH~i~ta~iLAd~~--~ds~Vv~AaiLHDVVDDt~~S~ee  139 (543)
T KOG1157|consen   63 RRAQLWHKTFSSELVIKALYEAAKAHRGQMRAD-DDRPYLNHCIETAMILADIG--ADSTVVVAAILHDVVDDTFMSYEE  139 (543)
T ss_pred             hhhhhhhhcCcHHHHHHHHHHHHHHHhcccccC-CCCchhhhHHHHHHHHHHhh--cchHHHHHHHHHHHHhhccCCHHH
Confidence            345577888888999999999999999999997 57799999999999999864  899999999999999999999999


Q ss_pred             HHHHhCHHHHHHHHHhhcCCCCCHHHHHHH-HHH----HcCCCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHH
Q psy8734         153 IEREFGPRVRSVVEELTDNKHMTRDERKRC-QIL----HAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFN  227 (264)
Q Consensus       153 L~~~FG~~Va~LV~gLTk~~~l~~~~r~~~-q~e----~lr~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~  227 (264)
                      |.+.||.+|+.+|+++|+.+.++...|+.. |++    ++.+.+.|++||||||+|+|||++...+|..|+++ ..+.+.
T Consensus       140 I~~~FG~gVa~LV~EvtddKnL~K~eRk~l~qiet~~~fyak~s~RAvLIkLADKLdNMRdL~~lpPvgwq~~-r~e~lf  218 (543)
T KOG1157|consen  140 ILRHFGTGVADLVEEVTDDKNLSKLERKNLTQIETVEMFYAKASARAVLIKLADKLDNMRDLYALPPVGWQRF-RKETLF  218 (543)
T ss_pred             HHHHhCccHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhHHH-HHHHHH
Confidence            999999999999999999999998887765 777    44567899999999999999999999999999976 567777


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhhcCcccccc
Q psy8734         228 WARDVVQGLRGTNAPIEAELDALFAKYCTPREGRE  262 (264)
Q Consensus       228 ~~a~La~~l~G~~~~lk~eLedl~~r~l~p~~y~~  262 (264)
                      +++|+|+++ |+ ...+.++++++|+|++|+.|-+
T Consensus       219 Iwapla~~~-g~-gtn~~lle~Ldf~~l~p~~~~~  251 (543)
T KOG1157|consen  219 IWAPLANRL-GI-GTNKVLLENLDFKHLFPCQHIE  251 (543)
T ss_pred             HhhHHHHHh-cc-cchHHHHhhhhHHHhCchhHHH
Confidence            999999999 77 6799999999999999998743

>PF13328 HD_4: HD domain; PDB: 3NR1_B

Probab=99.98  E-value=1.2e-32  Score=230.94  Aligned_cols=143  Identities=40%  Similarity=0.567  Sum_probs=95.1

Q ss_pred             HHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHHhCHHHHHHHHHhh
Q psy8734          90 ATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELT  169 (264)
Q Consensus        90 Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~FG~~Va~LV~gLT  169 (264)
                      |+.||.+.|.+|++++  |.||+.|+++||.+|.+. | .|.++++||||||++||+..+ ++|++.||++|+++|.++|
T Consensus         1 A~~~A~~~h~~~~~~~--g~py~~H~~~va~~l~~~-~-~d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~lt   75 (153)
T PF13328_consen    1 ALAFAAEAHAGQRRKS--GEPYISHPLEVAEILAEL-G-LDEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDALT   75 (153)
T ss_dssp             HHHHHHHHTTT-B-ST----BTTHHHHHHHHHHHTS-----HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT-
T ss_pred             CHHHHHHHHhcccCCC--CCcHHHHHHHHHHHHHHc-C-CCHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHHH
Confidence            7899999999888775  999999999999999875 5 799999999999999999655 9999999999999999999


Q ss_pred             cCCCCCHH---HHHHHHHHHcCC------CCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHhcCC
Q psy8734         170 DNKHMTRD---ERKRCQILHAPH------SSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGT  239 (264)
Q Consensus       170 k~~~l~~~---~r~~~q~e~lr~------~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a~La~~l~G~  239 (264)
                      +.+.++..   .+...+++++++      .|+++++||||||+||||++...+++++. ..++++.++|+|||++| |+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~-~~a~Et~~i~apLA~rL-Gi  152 (153)
T PF13328_consen   76 KIKKLSKKPWEERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQR-RYARETLDIYAPLAHRL-GI  152 (153)
T ss_dssp             --TTS-HH---HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT-----------------------
T ss_pred             hccccccccchhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhh-hhhhccccccccccccc-cC
Confidence            99988755   456678888876      57899999999999999999888777765 45889999999999999 87

>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein

Probab=98.14  E-value=1.1e-05  Score=70.13  Aligned_cols=64  Identities=20%  Similarity=0.359  Sum_probs=52.3

Q ss_pred             CCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhcc---ccCCC--------------CCHHHHHHHhCHHHHHHHHHhhc
Q psy8734         108 GTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDT---VEDTD--------------TTFEEIEREFGPRVRSVVEELTD  170 (264)
Q Consensus       108 G~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDv---vEDt~--------------~t~eeL~~~FG~~Va~LV~gLTk  170 (264)
                      ..+++.|++++|.+.... | .|.+.++||||||+   +++..              +..+.|+..||++|+.+|..-..
T Consensus        23 ~Vs~leH~LQ~A~lA~~~-G-ad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~~lV~~Hv~  100 (179)
T TIGR03276        23 AVSQLEHALQCAQLAEAA-G-ADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVTEPIRLHVQ  100 (179)
T ss_pred             CCcHHHHHHHHHHHHHHc-C-CCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            457899999999877765 4 69999999999998   67543              22578888999999999999886


Q ss_pred             CCC
Q psy8734         171 NKH  173 (264)
Q Consensus       171 ~~~  173 (264)
                      .+.
T Consensus       101 aKr  103 (179)
T TIGR03276       101 AKR  103 (179)
T ss_pred             HHH
Confidence            654

This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).

>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif

Probab=95.22  E-value=0.16  Score=38.19  Aligned_cols=99  Identities=21%  Similarity=0.215  Sum_probs=51.7

Q ss_pred             CCchhhhHHHHHHHHHHcC---CC-CCHHHHHHHhhhccccCCCCCHHH----HHHHhCHHHHHHHHHhhcCCCCCHHHH
Q psy8734         108 GTPYIEHPVAVAHILTHLG---KV-SNPVVIISALLHDTVEDTDTTFEE----IEREFGPRVRSVVEELTDNKHMTRDER  179 (264)
Q Consensus       108 G~PYi~H~l~VA~iL~~l~---g~-~D~~~liAALLHDvvEDt~~t~ee----L~~~FG~~Va~LV~gLTk~~~l~~~~r  179 (264)
                      +.+.+.|.+.|+.+.....   +. ......+||||||+-.........    ....++...+.++..    ..++....
T Consensus         2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~~~~~~~~~~~~~~h~~~~~~~~~~----~~~~~~~~   77 (124)
T smart00471        2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIGAEILLE----EEEPRILE   77 (124)
T ss_pred             CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccCCHHHhcCccHHHHhHHHHHHHHHh----CCCCHHHH
Confidence            4677899999998765321   11 124578999999987754321110    011122222222222    12221111


Q ss_pred             HH------HHHHHc-----CCCCcchhHhHHHhHHhhhhhhh
Q psy8734         180 KR------CQILHA-----PHSSHEAKLVKLADKLHNLRDIE  210 (264)
Q Consensus       180 ~~------~q~e~l-----r~~D~rvvLIKLADRL~NLR~l~  210 (264)
                      ..      .+....     ......+.++++||++++++...
T Consensus        78 ~~~~~~i~~h~~~~~~~~~~~~~~~~~il~~aD~~~~~~~~~  119 (124)
T smart00471       78 EILATAILSHHERPDGLRGEPITLEARIVKVADRLDALRRDR  119 (124)
T ss_pred             HHHhhHHHHhccccCCCCCCcCCHHHHHHHHHHHHHHHhcCC
Confidence            10      011101     12456899999999999987654

Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).

>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []

Probab=94.32  E-value=0.035  Score=42.52  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=23.4

Q ss_pred             hhhHHHHHHHHHHcCCCC----CH-HHHHHHhhhccccCC
Q psy8734         112 IEHPVAVAHILTHLGKVS----NP-VVIISALLHDTVEDT  146 (264)
Q Consensus       112 i~H~l~VA~iL~~l~g~~----D~-~~liAALLHDvvEDt  146 (264)
                      +.|.+.|+.+...+....    |. -..+||||||+=.-.
T Consensus         2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~   41 (122)
T PF01966_consen    2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP   41 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred             hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence            579999998876543100    11 167999999986644

These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....

>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif

Probab=93.17  E-value=0.51  Score=35.98  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=25.4

Q ss_pred             chhhhHHHHHHHHHHcCCCC------CHHHHHHHhhhccccCC
Q psy8734         110 PYIEHPVAVAHILTHLGKVS------NPVVIISALLHDTVEDT  146 (264)
Q Consensus       110 PYi~H~l~VA~iL~~l~g~~------D~~~liAALLHDvvEDt  146 (264)
                      +.+.|.+.|+.+...+....      .....+||||||+-+..
T Consensus         2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~   44 (145)
T cd00077           2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG   44 (145)
T ss_pred             chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence            35789999888765432101      24578999999998754

>PRK12703 tRNA 2'-O-methylase; Reviewed

Probab=91.39  E-value=1.6  Score=41.83  Aligned_cols=95  Identities=23%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             chhhhHHHHHHHHH---HcCCCCCHH-HHHHHhhhccccCCCC-------CHHHHHH-HhCHHHHHHHHHhhcCCCCCHH
Q psy8734         110 PYIEHPVAVAHILT---HLGKVSNPV-VIISALLHDTVEDTDT-------TFEEIER-EFGPRVRSVVEELTDNKHMTRD  177 (264)
Q Consensus       110 PYi~H~l~VA~iL~---~l~g~~D~~-~liAALLHDvvEDt~~-------t~eeL~~-~FG~~Va~LV~gLTk~~~l~~~  177 (264)
                      ..+.|+.+|+....   ...+ .|.+ .++||||||+-.....       ..+-|++ .|.++++.+|+.... .+++..
T Consensus       187 ~l~~Hs~rVa~lA~~LA~~~~-~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~g-~G~~~~  264 (339)
T PRK12703        187 LLIRHVKTVYKLAMRIADCIN-ADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENIDDRVVSIVERHIG-AGITSE  264 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCCCHHHHHHHHHHhc-cCCCcc
Confidence            35789999987643   3233 4655 5578999998654321       2334433 466788888876552 122211


Q ss_pred             HHHHHHHH--HcCCCCcchhHhHHHhHHhhh
Q psy8734         178 ERKRCQIL--HAPHSSHEAKLVKLADKLHNL  206 (264)
Q Consensus       178 ~r~~~q~e--~lr~~D~rvvLIKLADRL~NL  206 (264)
                      +.......  .....+....+|-.||++...
T Consensus       265 ~~~~~gL~~~~~~P~TLEakIV~dADrL~~~  295 (339)
T PRK12703        265 EAQKLGLPVKDYVPETIEEMIVAHADNLFAG  295 (339)
T ss_pred             hhhccCCccccCCCCCHHHHHHHHHHHHhcC
Confidence            10000000  011234577899999999765

>COG1418 Predicted HD superfamily hydrolase [General function prediction only]

Probab=90.33  E-value=0.91  Score=40.70  Aligned_cols=52  Identities=31%  Similarity=0.390  Sum_probs=36.7

Q ss_pred             CCchhhhHHHHHHHH---HHcCCCCCHH-HHHHHhhhccccCCCCCH--------HHHHHHhCHH
Q psy8734         108 GTPYIEHPVAVAHIL---THLGKVSNPV-VIISALLHDTVEDTDTTF--------EEIEREFGPR  160 (264)
Q Consensus       108 G~PYi~H~l~VA~iL---~~l~g~~D~~-~liAALLHDvvEDt~~t~--------eeL~~~FG~~  160 (264)
                      |+.-+.|+++|+.+.   +...| .|.+ +..||||||+..-.....        .++.+.|+..
T Consensus        34 ~~~~l~H~~~Va~lA~~Ia~~~g-~D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~~~~   97 (222)
T COG1418          34 GQHVLEHSLRVAYLAYRIAEEEG-VDPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKFLED   97 (222)
T ss_pred             cchHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHHccc
Confidence            788899999999863   34445 4776 568999999887544332        2566667765

>PRK03826 5'-nucleotidase; Provisional

Probab=88.28  E-value=3.7  Score=36.18  Aligned_cols=97  Identities=25%  Similarity=0.247  Sum_probs=48.4

Q ss_pred             CchhhhHHHHHHHHHH--------cCCCCCHH-HHHHHhhhccccCC-C-C-CH-----HHHHHHhCHHHHHHHHHhhcC
Q psy8734         109 TPYIEHPVAVAHILTH--------LGKVSNPV-VIISALLHDTVEDT-D-T-TF-----EEIEREFGPRVRSVVEELTDN  171 (264)
Q Consensus       109 ~PYi~H~l~VA~iL~~--------l~g~~D~~-~liAALLHDvvEDt-~-~-t~-----eeL~~~FG~~Va~LV~gLTk~  171 (264)
                      +.-..|...||.+..-        .++..|.+ ++..||+||+.|-- + + ++     ..+.+.+.+-=....+.+.. 
T Consensus        27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~~tGDi~tPvK~~~~~~~~~~~~~E~~a~~~l~~-  105 (195)
T PRK03826         27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEVLTGDLPTPVKYFNPEIAHEYKKIEKIAEQKLLD-  105 (195)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHHhcCCcccccccccchhHHHHHHHHHHHHHHHHH-
Confidence            4556899999887331        12234655 67789999998832 1 1 21     22222222110111222221 


Q ss_pred             CCCCHHHH--HHHHHHHcCCCCcchhHhHHHhHHhhhh
Q psy8734         172 KHMTRDER--KRCQILHAPHSSHEAKLVKLADKLHNLR  207 (264)
Q Consensus       172 ~~l~~~~r--~~~q~e~lr~~D~rvvLIKLADRL~NLR  207 (264)
                       .++..-+  -..........++...+||.||+++-+-
T Consensus       106 -~LP~~l~~~~~~~~~e~e~~~~Ea~lvK~aDkL~a~l  142 (195)
T PRK03826        106 -MLPEELQEDFRPLLDSHAASEEEKAIVKQADALCAYL  142 (195)
T ss_pred             -hCCHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHH
Confidence             1221111  1111111223466899999999998753

>PRK10119 putative hydrolase; Provisional

Probab=88.26  E-value=3.4  Score=37.40  Aligned_cols=53  Identities=17%  Similarity=0.153  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHH---HcCCCCCHH-HHHHHhhhcccc
Q psy8734          86 NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT---HLGKVSNPV-VIISALLHDTVE  144 (264)
Q Consensus        86 ~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~---~l~g~~D~~-~liAALLHDvvE  144 (264)
                      .+.++..|..+...+.-     ...-+.|..+|.....   +.-| .|.. +.+||||||+..
T Consensus         6 ~~~~~~~~v~~~l~~~~-----~~HD~~Hi~RV~~lA~~Ia~~e~-~D~~vv~lAAlLHDv~d   62 (231)
T PRK10119          6 WQAQFENWLKNHHQHQD-----AAHDICHFRRVWATAQKLAADDD-VDMLVVLTACYFHDIVS   62 (231)
T ss_pred             HHHHHHHHHHHHhhcCC-----CccChHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhhcch
Confidence            45566677766655431     2234778888775433   2223 3554 669999999964

>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family

Probab=88.17  E-value=2.3  Score=38.37  Aligned_cols=113  Identities=18%  Similarity=0.183  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHc-------CCCCCHH-HHHHHhhhcccc-CCCCCHHH
Q psy8734          82 DAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHL-------GKVSNPV-VIISALLHDTVE-DTDTTFEE  152 (264)
Q Consensus        82 ~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l-------~g~~D~~-~liAALLHDvvE-Dt~~t~ee  152 (264)
                      .+...++++.+|+.+.+..         .-+.|+++|.......       .+ .|.+ ..+||||||+-- +.......
T Consensus        36 Pdt~l~~~a~~~~~~~l~~---------~~~~Hs~RV~~~a~~ia~~e~~~~~-~D~evl~lAALLHDIG~~~~~~~~~~  105 (228)
T TIGR03401        36 PDTPLVKFAQEYAKARLPP---------ETYNHSLRVYYYGLAIARDQFPEWD-LSDETWFLTCLLHDIGTTDENMTATK  105 (228)
T ss_pred             CChHHHHHHHHHHHhhCCH---------hhhHHHHHHHHHHHHHHHHhccccC-CCHHHHHHHHHHHhhccccccCCccc
Confidence            4778899999998776432         3378999987543221       13 4665 569999999864 22211112


Q ss_pred             HH-HHhCHHHH-HHHHHhhcCCCCCHHHHHH--HHHHH--cC----CCCcchhHhHHHhHHhhhh
Q psy8734         153 IE-REFGPRVR-SVVEELTDNKHMTRDERKR--CQILH--AP----HSSHEAKLVKLADKLHNLR  207 (264)
Q Consensus       153 L~-~~FG~~Va-~LV~gLTk~~~l~~~~r~~--~q~e~--lr----~~D~rvvLIKLADRL~NLR  207 (264)
                      +. +..|...+ +++...+   +.+......  .-+..  ..    ..++.+.||..||+++++-
T Consensus       106 ~~fe~~ga~~A~~~L~~~~---G~~~~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~lDa~G  167 (228)
T TIGR03401       106 MSFEFYGGILALDVLKEQT---GANQDQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIFDNVG  167 (228)
T ss_pred             CCHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhHcc
Confidence            21 12233222 2333221   333221110  00000  00    1256899999999999974

Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=86.20  E-value=2  Score=43.27  Aligned_cols=118  Identities=24%  Similarity=0.254  Sum_probs=57.6

Q ss_pred             CCchhhhHHHHHHH---HHHcCCCCCHH-HHHHHhhhccccCCCCCHHHHHHHhCHHHHHHHHHhhcCCCCCHHHH-HHH
Q psy8734         108 GTPYIEHPVAVAHI---LTHLGKVSNPV-VIISALLHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDER-KRC  182 (264)
Q Consensus       108 G~PYi~H~l~VA~i---L~~l~g~~D~~-~liAALLHDvvEDt~~t~eeL~~~FG~~Va~LV~gLTk~~~l~~~~r-~~~  182 (264)
                      |...+.|.++||.+   ++...| .|.+ ...||||||+=....  .+ +   .|....-...-+.+....+.... -..
T Consensus       327 ~~~~l~Hs~~VA~lA~~LA~~lg-ld~~~a~~AGLLHDIGK~~~--~e-~---~~~H~~~Ga~ll~~~~~~~~V~~aI~~  399 (514)
T TIGR03319       327 GQNVLQHSIEVAHLAGIMAAELG-EDVKLAKRAGLLHDIGKAVD--HE-V---EGSHVEIGAELAKKYKESPEVVNAIAA  399 (514)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHHHHHhcCcccc--hh-h---cccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            45568899999986   444456 3554 667999999744211  11 1   11111111111222211100000 000


Q ss_pred             HHHHcCCCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHH---HHHHHHHHhcCC
Q psy8734         183 QILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFN---WARDVVQGLRGT  239 (264)
Q Consensus       183 q~e~lr~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~---~~a~La~~l~G~  239 (264)
                      +.+.....++-+.+|.+||.++..|.=.+      . +....|.+   --..+++...|.
T Consensus       400 HH~~~~~~~~~a~IV~~AD~lsa~rpgar------~-e~~~~~~~rl~~le~i~~~~~gv  452 (514)
T TIGR03319       400 HHGDVEPTSIEAVLVAAADALSAARPGAR------R-ESLENYIKRLEKLEEIANSFEGV  452 (514)
T ss_pred             hCCCCCCCCHHHHHHHHHHHhcCCCCCCc------c-cCHHHHHHHHHHHHHHHHhCCCc
Confidence            00011124678889999999998873221      1 12333433   345566666565

>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]

Probab=83.65  E-value=9.3  Score=33.54  Aligned_cols=98  Identities=28%  Similarity=0.194  Sum_probs=52.9

Q ss_pred             CCchhhhHHHHHHHHH-------HcCCCCCH-HHHHHHhhhccccCC----CCCHHHHHHHhCHHHHHHHHHhhcCC-CC
Q psy8734         108 GTPYIEHPVAVAHILT-------HLGKVSNP-VVIISALLHDTVEDT----DTTFEEIEREFGPRVRSVVEELTDNK-HM  174 (264)
Q Consensus       108 G~PYi~H~l~VA~iL~-------~l~g~~D~-~~liAALLHDvvEDt----~~t~eeL~~~FG~~Va~LV~gLTk~~-~l  174 (264)
                      ++.-..|...||.+..       ..++..|. ..+..||+||..|--    +..............-+..+.+.+.. +.
T Consensus        31 ~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~~~~  110 (193)
T COG1896          31 PESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLFGL  110 (193)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHcccCC
Confidence            5677789888877522       21111343 377899999998842    22222233334444444344443322 11


Q ss_pred             CHHHHHHHHHHHcCCCCcchhHhHHHhHHhhh
Q psy8734         175 TRDERKRCQILHAPHSSHEAKLVKLADKLHNL  206 (264)
Q Consensus       175 ~~~~r~~~q~e~lr~~D~rvvLIKLADRL~NL  206 (264)
                      + .+-....-+.....+..+.+||.||+++.+
T Consensus       111 p-~e~~~~~~~~~~~~s~ea~~vk~aDkl~~~  141 (193)
T COG1896         111 P-EELLELFREYEKRSSLEARIVKDADKLELL  141 (193)
T ss_pred             c-HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            1 111111111112368899999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
3nr1_A	178	A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl		7e-44
3nqw_A	179	A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl		8e-38
1vj7_A	393	Crystal Structure Of The Bifunctional Catalytic Fra		1e-08

>pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178

Iteration: 1
 Score =  173 bits (439), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 111/168 (66%)
Query: 86  NIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXXXX 145
            +++A DFA+ KH  QRRKDPEGTPYI HP+ VA ILTH   +++ VV+ +ALLH     
Sbjct: 6   QLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVED 65
Query: 146 XXXXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHN 205
                      FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKL+N
Sbjct: 66  TDTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYN 125
Query: 206 LRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAK 253
           LRD+ R  P  W+E R  +YF WA  VV+GL+GTN  +E  L  LF +
Sbjct: 126 LRDLNRCTPEGWSEHRVQEYFEWAAQVVKGLQGTNRQLEEALKHLFKQ 173

>pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179

Iteration: 1
 Score =  153 bits (387), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 105/165 (63%)
Query: 87  IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHXXXXXX 146
            ++   +A+ KH  QRRKDP+ TPY+ H + V+ IL+    +++  V+++ALLH      
Sbjct: 9   FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDT 68
Query: 147 XXXXXXXXXXFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
                     FGP V  +V E+TD+K + + ERKR QI +A  SS  AKL+KLADKL NL
Sbjct: 69  DASFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNL 128
Query: 207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALF 251
           RD++ + P  WT+ER+ QYF WA+ VV  LRGTNA +E +LD +F
Sbjct: 129 RDLQVNTPTGWTQERRDQYFVWAKKVVDNLRGTNANLELKLDEIF 173

>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 78  MHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISA 137
           M+  DA   + KA D+A+  H +Q RK   G PYI HP+ VA IL  L    + V +   
Sbjct: 20  MNETDAAF-VKKALDYATAAHFYQVRK--SGEPYIVHPIQVAGILADLH--LDAVTVACG 74
Query: 138 LLHXXXXXXXXXXXXXXXXFGPRVRSVVEELTD---------NKHMTRDERKRCQILHAP 188
            LH                FG  VR +V+ +T           + +  + RK   +L A 
Sbjct: 75  FLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRK---MLMAM 131
Query: 189 HSSHEAKLVKLADKLHNLRDIE 210
                  LVKLAD+LHN+R ++
Sbjct: 132 SKDIRVILVKLADRLHNMRTLK 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
3nqw_A	179	CG11900; stringent response, pyrophosphohydrolase,	1e-75
3nr1_A	178	HD domain-containing protein 3; stringent response	1e-67
1vj7_A	393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	9e-29

>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179

 Score =  226 bits (579), Expect = 1e-75
 Identities = 83/175 (47%), Positives = 120/175 (68%)

Query: 80  SPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALL 139
           +       ++   +A+ KH  QRRKDP+ TPY+ H + V+ IL+    +++  V+++ALL
Sbjct: 2   ATYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALL 61

Query: 140 HDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKL 199
           HD VEDTD +FE++E+ FGP V  +V E+TD+K + + ERKR QI +A  SS  AKL+KL
Sbjct: 62  HDVVEDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKL 121

Query: 200 ADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAKY 254
           ADKL NLRD++ + P  WT+ER+ QYF WA+ VV  LRGTNA +E +LD +F + 
Sbjct: 122 ADKLDNLRDLQVNTPTGWTQERRDQYFVWAKKVVDNLRGTNANLELKLDEIFRQR 176

>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178

 Score =  206 bits (526), Expect = 1e-67
 Identities = 97/167 (58%), Positives = 124/167 (74%)

Query: 87  IVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDT 146
           +++A DFA+ KH  QRRKDPEGTPYI HP+ VA ILTH   +++ VV+ +ALLHDTVEDT
Sbjct: 7   LLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDT 66

Query: 147 DTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL 206
           DTT +E+E  FG +VR +VEE+TD+K + + ERKR Q+  APHSS  AKLVKLADKL+NL
Sbjct: 67  DTTLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYNL 126

Query: 207 RDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDALFAK 253
           RD+ R  P  W+E R  +YF WA  VV+GL+GTN  +E  L  LF +
Sbjct: 127 RDLNRCTPEGWSEHRVQEYFEWAAQVVKGLQGTNRQLEEALKHLFKQ 173

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393

 Score =  111 bits (280), Expect = 9e-29
 Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 38/149 (25%)

Query: 79  HSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISAL 138
            +      + KA D+A+  H +Q RK   G PYI HP+ VA IL  L    + V +    
Sbjct: 20  MNETDAAFVKKALDYATAAHFYQVRKS--GEPYIVHPIQVAGILADLH--LDAVTVACGF 75

Query: 139 LHDTVEDTDTTFEEIEREFGPRVRSVVEELT-------DNKH-------------MTRDE 178
           LHD VEDTD T + IE +FG  VR +V+ +T        +               M++D 
Sbjct: 76  LHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDI 135

Query: 179 RKRCQILHAPHSSHEAKLVKLADKLHNLR 207
           R                LVKLAD+LHN+R
Sbjct: 136 R--------------VILVKLADRLHNMR 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
1vj7_A	393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	100.0
3nqw_A	179	CG11900; stringent response, pyrophosphohydrolase,	100.0
3nr1_A	178	HD domain-containing protein 3; stringent response	100.0
2qgs_A	225	Protein Se1688; alpha-helical protein, structural	92.86
2paq_A	201	5'-deoxynucleotidase YFBR; HD domain phosphoh stru	92.78
3dto_A	223	BH2835 protein; all alpha-helical protein, structu	91.73
3djb_A	223	Hydrolase, HD family; all alpha-helical protein.,	91.68
3b57_A	209	LIN1889 protein; Q92AN1, X-RAY, NESG, structural g	88.2
2pjq_A	231	Uncharacterized protein LP_2664; LPR71, NESG, stru	87.28
3kh1_A	200	Predicted metal-dependent phosphohydrolase; struct	80.75

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8

Probab=100.00  E-value=1.5e-45  Score=350.54  Aligned_cols=179  Identities=31%  Similarity=0.438  Sum_probs=151.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHH
Q psy8734          77 GMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIERE  156 (264)
Q Consensus        77 ~~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~  156 (264)
                      .|+++.+...+.+|+.||.++|.||+|++  |+||+.||++||.+|+++ | +|.++++||||||++|||++|.++|++.
T Consensus        18 ~~~~~~~~~~l~~A~~~A~~aH~gQ~rks--GePYi~Hpl~VA~iLa~l-~-~D~~~i~AALLHDvvEDt~~t~e~I~~~   93 (393)
T 1vj7_A           18 KYMNETDAAFVKKALDYATAAHFYQVRKS--GEPYIVHPIQVAGILADL-H-LDAVTVACGFLHDVVEDTDITLDNIEFD   93 (393)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHTTTCBCTT--SCBTTHHHHHHHHHHHHT-T-CCHHHHHHHHHTTHHHHSSCCHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHhccCcCCC--CCcHHHHHHHHHHHHHHh-c-CCHHHHHHHHhhhHHhcCCCCHHHHHHH
Confidence            67899999999999999999999999985  999999999999999986 4 7999999999999999999999999999


Q ss_pred             hCHHHHHHHHHhhcCCCCCHHHHHHHHHHHcCC------CCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHH
Q psy8734         157 FGPRVRSVVEELTDNKHMTRDERKRCQILHAPH------SSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWAR  230 (264)
Q Consensus       157 FG~~Va~LV~gLTk~~~l~~~~r~~~q~e~lr~------~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a  230 (264)
                      ||++|+.+|+|||+++++++..+...|++++|+      .|+||++||||||+||||++...++++|.+ .++|++++|+
T Consensus        94 FG~~Va~lV~gvTk~~~~~~~~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~-iA~Etl~iya  172 (393)
T 1vj7_A           94 FGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER-ISRETMEIYA  172 (393)
T ss_dssp             HCHHHHHHHHHHHHHC--------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH-HHHHHHHTHH
T ss_pred             hCHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH-HHHHHHHHHH
Confidence            999999999999999999876666678999875      799999999999999999999999888764 5899999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhcCcccccc
Q psy8734         231 DVVQGLRGTNAPIEAELDALFAKYCTPREGRE  262 (264)
Q Consensus       231 ~La~~l~G~~~~lk~eLedl~~r~l~p~~y~~  262 (264)
                      |||+|| |+ +++||||||||||||+|+.|++
T Consensus       173 PLA~rL-Gi-~~ik~ELEdl~f~~l~p~~y~~  202 (393)
T 1vj7_A          173 PLAHRL-GI-SRIKWELEDLAFRYLNETEFYK  202 (393)
T ss_dssp             HHHHHT-TC-HHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHhhc-Ch-hHHHHHHHHHHhcccchhHHHH
Confidence            999999 99 9999999999999999999974

>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}

Probab=100.00  E-value=2.2e-44  Score=309.84  Aligned_cols=177  Identities=47%  Similarity=0.777  Sum_probs=165.2

Q ss_pred             CChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHHhC
Q psy8734          79 HSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFG  158 (264)
Q Consensus        79 ~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~FG  158 (264)
                      |+..+.+++.+|+.||.++|.||+|++++|.||+.|+++||.+|+...|..|.++++||||||++|||.+|.++|++.||
T Consensus         1 ~~~~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG   80 (179)
T 3nqw_A            1 MATYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFG   80 (179)
T ss_dssp             -CCCCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSSCCHHHHHHHHC
T ss_pred             CCcccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHC
Confidence            45567789999999999999999998556999999999999999944554499999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHcCCCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHhcC
Q psy8734         159 PRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRG  238 (264)
Q Consensus       159 ~~Va~LV~gLTk~~~l~~~~r~~~q~e~lr~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a~La~~l~G  238 (264)
                      ++|+.+|+|||+++.+++.++...|++++++.|+||++||||||+||||++...+++.|+.+++++|++|+.++++.|+|
T Consensus        81 ~~Va~lV~gvtk~~~~~~~~~~~~q~e~~r~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~v~~~l~~  160 (179)
T 3nqw_A           81 PDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAKKVVDNLRG  160 (179)
T ss_dssp             HHHHHHHHHTCCCTTSCHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999888888899999999999999999999999999999999999989999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhc
Q psy8734         239 TNAPIEAELDALFAKYC  255 (264)
Q Consensus       239 ~~~~lk~eLedl~~r~l  255 (264)
                      .|+.|..+|++++.+|.
T Consensus       161 ~n~~l~~~~~~~~~~~~  177 (179)
T 3nqw_A          161 TNANLELKLDEIFRQRG  177 (179)
T ss_dssp             SCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            99999999999999874

>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=299.12  Aligned_cols=174  Identities=56%  Similarity=0.885  Sum_probs=162.9

Q ss_pred             hHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHHhCHHH
Q psy8734          82 DAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIEREFGPRV  161 (264)
Q Consensus        82 ~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~FG~~V  161 (264)
                      .+.+++.+|+.||.++|.||+|++++|.||+.|+++||.+|...+|..|.++++||||||++|||.+|.++|++.||++|
T Consensus         2 ~d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~~t~e~i~~~FG~~V   81 (178)
T 3nr1_A            2 SEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQV   81 (178)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHH
Confidence            46789999999999999999998656999999999999999644564599999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHcCCCCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCH
Q psy8734         162 RSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWARDVVQGLRGTNA  241 (264)
Q Consensus       162 a~LV~gLTk~~~l~~~~r~~~q~e~lr~~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a~La~~l~G~~~  241 (264)
                      +.+|+|||+++.+++.++...|+++++..|+||++||||||+||||++...+++.|+.++.++|+.|+..+++.|+|.|+
T Consensus        82 a~lV~gvTk~~~~~~~~~~~~q~e~~~~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~v~~~l~~~~~  161 (178)
T 3nr1_A           82 RRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQVVKGLQGTNR  161 (178)
T ss_dssp             HHHHHHTCCCTTSCHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHhccccchhhHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhhCCccccCHHHHHHHHHHHHHHHHHhccCCH
Confidence            99999999999999888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q psy8734         242 PIEAELDALFAKYC  255 (264)
Q Consensus       242 ~lk~eLedl~~r~l  255 (264)
                      .|...|++++.+..
T Consensus       162 ~l~~~~~~~~~~~~  175 (178)
T 3nr1_A          162 QLEEALKHLFKQRG  175 (178)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999988653

>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1

Probab=92.86  E-value=0.58  Score=40.21  Aligned_cols=55  Identities=27%  Similarity=0.345  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHH----HHcCCCCCHH-HHHHHhhhccccC
Q psy8734          85 MNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHIL----THLGKVSNPV-VIISALLHDTVED  145 (264)
Q Consensus        85 ~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL----~~l~g~~D~~-~liAALLHDvvED  145 (264)
                      ..+.++.++......+..     ...-+.|.++|+...    +...| .|.+ ...||||||+...
T Consensus         5 ~li~~~~~~v~~~~~~~~-----~~H~~~H~~rV~~~a~~i~a~~~~-~d~~~l~lAAlLHDigk~   64 (225)
T 2qgs_A            5 MKIKKAYEYMKSFHQHDT-----TGHDIAHVERVYNNACYIAKRENI-TDTLVIELSSLLHDTVDS   64 (225)
T ss_dssp             HHHHHHHHHHHHHTTTCS-----SCHHHHHHHHHHHHHHHHHHHTTC-SCCHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHHHHHHhcCC-----CccCHHHHHHHHHHHHHHHhhccC-CCHHHHHHHHHHHcCCCC
Confidence            577888888877766431     234579999999874    33234 3544 6799999999874

>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*

Probab=92.78  E-value=0.28  Score=41.90  Aligned_cols=99  Identities=24%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             CCchhhhHHHHHHHHH-------HcCC-CCCHH-HHHHHhhhcccc----CCCCCH----HHHHHHhCHHHHHHHHHhhc
Q psy8734         108 GTPYIEHPVAVAHILT-------HLGK-VSNPV-VIISALLHDTVE----DTDTTF----EEIEREFGPRVRSVVEELTD  170 (264)
Q Consensus       108 G~PYi~H~l~VA~iL~-------~l~g-~~D~~-~liAALLHDvvE----Dt~~t~----eeL~~~FG~~Va~LV~gLTk  170 (264)
                      +++-..|.+.||.+..       +..| -.|.+ ++.+|||||+.|    |.+...    .++.+.+++.=...+..+..
T Consensus        29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~p~k~~~~~~~~~~~~~E~~~~~~i~~  108 (201)
T 2paq_A           29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVD  108 (201)
T ss_dssp             CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCCC---------CTHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCchHhhhchHHHHHhcccHHHHHHHHHH
Confidence            5677789999997633       2221 24654 778899999988    321111    23333333322223333332


Q ss_pred             CCCCCHHHHHHHHHHHcCCCCcchhHhHHHhHHhhh
Q psy8734         171 NKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNL  206 (264)
Q Consensus       171 ~~~l~~~~r~~~q~e~lr~~D~rvvLIKLADRL~NL  206 (264)
                      .-.......-...........+.+++||-||+++-+
T Consensus       109 ~Lp~~~~~e~~~l~~e~e~~t~ea~lvk~aD~l~a~  144 (201)
T 2paq_A          109 MVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAY  144 (201)
T ss_dssp             TSCGGGHHHHHHHHTTTSCCHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence            211111111111111123356789999999999864

>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1

Probab=91.73  E-value=0.9  Score=39.34  Aligned_cols=55  Identities=20%  Similarity=0.169  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHH---cCCCCCHH-HHHHHhhhccccC
Q psy8734          85 MNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTH---LGKVSNPV-VIISALLHDTVED  145 (264)
Q Consensus        85 ~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~---l~g~~D~~-~liAALLHDvvED  145 (264)
                      ..+.++.+|+.+.+.+..     +..-+.|..+|+.....   ..| .|.+ ..+||||||+...
T Consensus         5 ~~i~~~~~~v~~~l~~~~-----~~H~~~H~~rV~~~a~~ia~~~~-~d~~~l~~AalLHDig~~   63 (223)
T 3dto_A            5 AILQSAEAWVKKQLMDEY-----SGHDWYHIRRVTLMAKAIGEQEK-VDVFVVQIAALFHDLIDD   63 (223)
T ss_dssp             HHHHHHHHHHHHTTTTC---------CHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHSTTC-
T ss_pred             HHHHHHHHHHHHHhhcCC-----CCCcHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhhcccc
Confidence            568889999988876542     33458899998875432   224 4665 6699999999853

>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1

Probab=91.68  E-value=0.92  Score=39.24  Aligned_cols=112  Identities=22%  Similarity=0.195  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHc---CCCCCHH-HHHHHhhhccccCCCC-----CHH---
Q psy8734          84 IMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHL---GKVSNPV-VIISALLHDTVEDTDT-----TFE---  151 (264)
Q Consensus        84 ~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l---~g~~D~~-~liAALLHDvvEDt~~-----t~e---  151 (264)
                      ...+.++.+|+.+.+.+..     +..-+.|..+|+.....+   .| .|.+ ..+||||||+......     ..+   
T Consensus         4 ~~~i~~~~~~v~~~l~~~~-----~~H~~~H~~rV~~~a~~ia~~~~-~d~~~l~~AAlLHDig~~k~~~h~~~ga~~a~   77 (223)
T 3djb_A            4 QEKIEKTITFVKHILEKDA-----SGHDWYHIRRVHKMAISLSEQEG-GNRFIIEMAALLHDVADEKLNESEEAGMKKVS   77 (223)
T ss_dssp             HHHHHHHHHHHHHHTTSSS-----CTTTHHHHHHHHHHHHHHHTTTC-SCHHHHHHHHTTHHHHC--CCSSSTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCC-----CcCcHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhhccccccCCcHHHHHHHHH
Confidence            3578899999988877552     334589999998865432   23 4665 6699999999863221     111   


Q ss_pred             HHHHH--hCHHHHHHHHHhhcCCCCCHHHHHHHHHHHcCCCCcchhHhHHHhHHhhhhh
Q psy8734         152 EIERE--FGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLRD  208 (264)
Q Consensus       152 eL~~~--FG~~Va~LV~gLTk~~~l~~~~r~~~q~e~lr~~D~rvvLIKLADRL~NLR~  208 (264)
                      ++-..  |+++....|..+-.....+.... .      ...++.+.+|.-||||+.|-.
T Consensus        78 ~~L~~~g~~~~~i~~V~~~I~~Hs~~~~~~-~------~p~tlea~iV~dADrLDalGa  129 (223)
T 3djb_A           78 DWLEELHVEEEESKHVLHIIANMSYKGGHG-G------KVESIEGKLVQDADRLDALGA  129 (223)
T ss_dssp             HHHHHTCCCHHHHHHHHHHTTCCC------------------HHHHHHHHHHHTTTSSH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHhCCccCCC-C------CCCCHHHHHHHhHHHHHHHHh
Confidence            22222  44544444433333222110000 0      023567899999999997643

>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1

Probab=88.20  E-value=2.3  Score=35.86  Aligned_cols=57  Identities=14%  Similarity=0.123  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHc---CCCCCHH-HHHHHhhhccccCC
Q psy8734          84 IMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHL---GKVSNPV-VIISALLHDTVEDT  146 (264)
Q Consensus        84 ~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l---~g~~D~~-~liAALLHDvvEDt  146 (264)
                      .+.+.++..+......+..     ...-+.|..+|+.....+   .| .|.+ ..+||||||+....
T Consensus         4 ~~li~~~~~~v~~~~~~~~-----~~H~~~H~~rV~~~a~~ia~~~~-~d~~~v~~AAlLHDig~~~   64 (209)
T 3b57_A            4 EEIILSAKNWMHSHFENET-----TGHDWSHIKRVWKLSKEIQSKEG-GDLFTIELAALFHDYSDIK   64 (209)
T ss_dssp             HHHHHHHHHHHHTTC-----------CCHHHHHHHHHHHHHHHHHHC-SCHHHHHHHHHHTTCCC--
T ss_pred             HHHHHHHHHHHHHHHhcCC-----CCcCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhccCccc
Confidence            3567777888766655321     233488999998875332   23 4765 56999999997653

>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1

Probab=87.28  E-value=1.4  Score=37.87  Aligned_cols=54  Identities=19%  Similarity=0.247  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHc---CCCCCHH-HHHHHhhhcccc
Q psy8734          85 MNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHL---GKVSNPV-VIISALLHDTVE  144 (264)
Q Consensus        85 ~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l---~g~~D~~-~liAALLHDvvE  144 (264)
                      ..+.++..+......+..     ...-+.|..+|+.....+   .| .|.+ ..+||||||+..
T Consensus        10 ~~i~~~~~~v~~~~~~~~-----~~H~~~H~~rV~~~a~~ia~~~~-~d~~ll~lAAlLHDigk   67 (231)
T 2pjq_A           10 TQLTAIQTYALQKLAHDH-----SGHGRDHLQRVNRLARRLAKDEG-ANLNLTLAAAWLHDVID   67 (231)
T ss_dssp             HHHHHHHHHHHTSSTTCC-----SSCSHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhccC-----CCcCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHcCCc
Confidence            457777777766655321     233488999998865332   23 4666 569999999975

>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}

Probab=80.75  E-value=17  Score=30.81  Aligned_cols=60  Identities=18%  Similarity=0.172  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHhhc--cCCCCC-----CCCCchhhhHHHHHHHHH---HcCC-CCCH-HHHHHHhhhcccc
Q psy8734          85 MNIVKATDFASHKHH--FQRRKD-----PEGTPYIEHPVAVAHILT---HLGK-VSNP-VVIISALLHDTVE  144 (264)
Q Consensus        85 ~~i~~Al~~A~~aH~--gQ~rk~-----~sG~PYi~H~l~VA~iL~---~l~g-~~D~-~~liAALLHDvvE  144 (264)
                      .++.+-+.|-...+.  .+.|-+     .-.++-..|...||.+..   +..+ -.|. -++..||+||+.|
T Consensus         8 ~~l~~~~~Fl~~~~~LK~i~R~~~~~~~~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E   79 (200)
T 3kh1_A            8 SRLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVE   79 (200)
T ss_dssp             HHHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHHHHHHhhCcCCcCCCcCCCCCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHH
Confidence            356777777766654  222211     012345679999998743   3222 1465 5788999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1vj7a1	192	a.211.1.1 (A:5-196) Stringent response-like protei	4e-14

>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

 Score = 66.7 bits (162), Expect = 4e-14
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 19/185 (10%)

Query: 79  HSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISAL 138
            +      + KA D+A+  H +Q RK  E  PYI HP+ VA IL       + V +    
Sbjct: 16  MNETDAAFVKKALDYATAAHFYQVRKSGE--PYIVHPIQVAGILAD--LHLDAVTVACGF 71

Query: 139 LHDTVEDTDTTFEEIEREFGPRVRSVVEELTDNKHMTRDERKR------CQILHAPHSSH 192
           LHD VEDTD T + IE +FG  VR +V+ +T    +     +        ++L A     
Sbjct: 72  LHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDI 131

Query: 193 EAKLVKLADKLHNLRDIE---RSLPVNWTEERKTQYFNWARDVVQGLRGTNAPIEAELDA 249
              LVKLAD+LHN+R ++   +      + E    Y   A       R   + I+ EL+ 
Sbjct: 132 RVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAH------RLGISRIKWELED 185

Query: 250 LFAKY 254
           L  +Y
Sbjct: 186 LAFRY 190

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1vj7a1	192	Stringent response-like protein RelA N-terminal do	100.0
d3b57a1	201	Uncharacterized protein Lin1889 {Listeria innocua	93.12
d2qgsa1	216	Uncharacterized protein SE1688 {Staphylococcus epi	93.05
d3dtoa1	212	Uncharacterized protein BH2835 {Bacillus haloduran	92.93
d2pjqa1	215	Uncharacterized protein LP2664 {Lactobacillus plan	92.92
d2pq7a1	217	Predicted hydrolase mes0020 {Uncultured thermotoga	91.8
d3djba1	213	Uncharacterized protein BT9727_1981 {Bacillus thur	91.56

>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]}

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

Probab=100.00  E-value=1.3e-45  Score=318.11  Aligned_cols=173  Identities=31%  Similarity=0.455  Sum_probs=144.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHHHcCCCCCHHHHHHHhhhccccCCCCCHHHHHHH
Q psy8734          77 GMHSPDAIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILTHLGKVSNPVVIISALLHDTVEDTDTTFEEIERE  156 (264)
Q Consensus        77 ~~~~~~~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~~l~g~~D~~~liAALLHDvvEDt~~t~eeL~~~  156 (264)
                      .|+++++...+.+|+.||.++|.||+|++  |+||+.|+++||.+|.+.+  .|.++++||||||++|||++|.++|++.
T Consensus        14 ~yl~~~d~~~i~~A~~~A~~~H~gq~r~s--G~py~~H~~~VA~iL~~~~--~d~~~i~AalLhd~~edt~~t~e~I~~~   89 (192)
T d1vj7a1          14 KYMNETDAAFVKKALDYATAAHFYQVRKS--GEPYIVHPIQVAGILADLH--LDAVTVACGFLHDVVEDTDITLDNIEFD   89 (192)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHTTTCBCTT--SCBTTHHHHHHHHHHHHTT--CCHHHHHHHHHTTHHHHSSCCHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHcCCcccC--hHHHHHHHHHHHHHHHHhc--CChHHhhhhheechhhhchhHHHHHHHh
Confidence            57899999999999999999999999985  9999999999999999864  6999999999999999999999999999


Q ss_pred             hCHHHHHHHHHhhcCCCCCHHHHHHHHHHHcCC------CCcchhHhHHHhHHhhhhhhhccCCcchhHHHHHHHHHHHH
Q psy8734         157 FGPRVRSVVEELTDNKHMTRDERKRCQILHAPH------SSHEAKLVKLADKLHNLRDIERSLPVNWTEERKTQYFNWAR  230 (264)
Q Consensus       157 FG~~Va~LV~gLTk~~~l~~~~r~~~q~e~lr~------~D~rvvLIKLADRL~NLR~l~~~~~e~~~~~~a~ey~~~~a  230 (264)
                      ||++|+++|.++|++..+++..+...+.+++++      .|+||++|||||||||||++...+++++++ .++|++++|+
T Consensus        90 FG~~Va~lV~~ltk~~~~~~~~~~~~~ae~~rkmlla~~~d~rvvlIKLADRLhnlrtl~~~~~~k~~~-~a~Et~~iya  168 (192)
T d1vj7a1          90 FGKDVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER-ISRETMEIYA  168 (192)
T ss_dssp             HCHHHHHHHHHHHHHC--------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH-HHHHHHHTHH
T ss_pred             cchhHHHHHHHHHhhccccccccchHHHHHHHHHHHhhccCceeehhHHHHHHhhccccccCChHHHHH-HHHHHHHHHH
Confidence            999999999999999998876666667777654      799999999999999999999998888765 5889999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhcC
Q psy8734         231 DVVQGLRGTNAPIEAELDALFAKYCT  256 (264)
Q Consensus       231 ~La~~l~G~~~~lk~eLedl~~r~l~  256 (264)
                      |||+|| |+ +++||||||+|||||+
T Consensus       169 plA~rL-G~-~~ik~eLEdl~f~~L~  192 (192)
T d1vj7a1         169 PLAHRL-GI-SRIKWELEDLAFRYLN  192 (192)
T ss_dssp             HHHHHT-TC-HHHHHHHHHHHHHHHC
T ss_pred             HHHHHh-Cc-HHHHHHHHHHHHHhcC
Confidence            999999 99 9999999999999986

>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]}

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Uncharacterized protein Lin1889
species: Listeria innocua [TaxId: 1642]

Probab=93.12  E-value=0.13  Score=41.53  Aligned_cols=58  Identities=14%  Similarity=0.087  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHH---HHcCCCCCHH-HHHHHhhhccccCC
Q psy8734          83 AIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHIL---THLGKVSNPV-VIISALLHDTVEDT  146 (264)
Q Consensus        83 ~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL---~~l~g~~D~~-~liAALLHDvvEDt  146 (264)
                      +.+.+.++.+|....+.+..     +..-+.|..+|....   +..-| .|.. ..+||||||+....
T Consensus         3 ~~~~i~~~~~~v~~~~~~~~-----~~Hd~~H~~rV~~~A~~Ia~~e~-~d~~~v~~AAlLHDi~~~k   64 (201)
T d3b57a1           3 KEEIILSAKNWMHSHFENET-----TGHDWSHIKRVWKLSKEIQSKEG-GDLFTIELAALFHDYSDIK   64 (201)
T ss_dssp             HHHHHHHHHHHHHTTC-----------CCHHHHHHHHHHHHHHHHHHC-SCHHHHHHHHHHTTCCC--
T ss_pred             HHHHHHHHHHHHHHHhcCCC-----CCCCHHHHHHHHHHHHHHHHHCC-ccHHHHHHHHHHhhccccc
Confidence            45678999999877766541     233478988888763   32224 4655 66999999987754

>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]}

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Uncharacterized protein SE1688
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=93.05  E-value=0.28  Score=40.24  Aligned_cols=57  Identities=26%  Similarity=0.362  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHH---HcCCCCCHH-HHHHHhhhccccCC
Q psy8734          85 MNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT---HLGKVSNPV-VIISALLHDTVEDT  146 (264)
Q Consensus        85 ~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~---~l~g~~D~~-~liAALLHDvvEDt  146 (264)
                      ..|+++.+|+...+.+..     ...-+.|..+|.....   ..-|..|.. ..+||||||+....
T Consensus         5 ~~i~~~~~~v~~~~~~~~-----~~Hd~~H~~RV~~~A~~Ia~~e~~~d~~vv~~AAlLHDigd~k   65 (216)
T d2qgsa1           5 MKIKKAYEYMKSFHQHDT-----TGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSK   65 (216)
T ss_dssp             HHHHHHHHHHHHHTTTCS-----SCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCCS
T ss_pred             HHHHHHHHHHHHHhcCCC-----CCcCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcccc
Confidence            468999999988877642     2244889999876532   222333554 56999999987544

>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]}

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Uncharacterized protein BH2835
species: Bacillus halodurans [TaxId: 86665]

Probab=92.93  E-value=0.2  Score=40.76  Aligned_cols=57  Identities=19%  Similarity=0.152  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHH---HHcCCCCCHH-HHHHHhhhccccC
Q psy8734          83 AIMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHIL---THLGKVSNPV-VIISALLHDTVED  145 (264)
Q Consensus        83 ~~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL---~~l~g~~D~~-~liAALLHDvvED  145 (264)
                      +...|+++.+|+.+...+..     ...-+.|..+|....   +..-| .|.+ ..+||||||+...
T Consensus         2 ~~~ii~~~~~~v~~~~~~~~-----~~H~~~H~~rV~~~A~~Ia~~e~-~D~~vv~~aAllHDig~~   62 (212)
T d3dtoa1           2 EQAILQSAEAWVKKQLMDEY-----SGHDWYHIRRVTLMAKAIGEQEK-VDVFVVQIAALFHDLIDD   62 (212)
T ss_dssp             CHHHHHHHHHHHHHTTTTC---------CHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHSTTC-
T ss_pred             HHHHHHHHHHHHHHHhccCC-----CCCCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHcccccc
Confidence            34678899999987776642     122378998888763   32234 4665 6699999998643

>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Uncharacterized protein LP2664
species: Lactobacillus plantarum [TaxId: 1590]

Probab=92.92  E-value=0.15  Score=41.87  Aligned_cols=55  Identities=20%  Similarity=0.273  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHH---HHcCCCCCHH-HHHHHhhhccccC
Q psy8734          85 MNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHIL---THLGKVSNPV-VIISALLHDTVED  145 (264)
Q Consensus        85 ~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL---~~l~g~~D~~-~liAALLHDvvED  145 (264)
                      ..+.+...|+.+...+..    +| .-+.|..+|+...   +..-| .|.+ +++||||||+...
T Consensus         5 ~~i~~i~~~~~~~l~~~~----~~-Hd~~H~~RV~~~A~~Ia~~e~-~D~~vv~~AAlLHDigd~   63 (215)
T d2pjqa1           5 TQLTAIQTYALQKLAHDH----SG-HGRDHLQRVNRLARRLAKDEG-ANLNLTLAAAWLHDVIDD   63 (215)
T ss_dssp             HHHHHHHHHHHTSSTTCC----SS-CSHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhcCCC----Cc-CCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhccc
Confidence            356667777766554432    12 3478888887753   32224 4766 5679999998753

>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Predicted hydrolase mes0020
species: Uncultured thermotogales bacterium [TaxId: 221214]

Probab=91.80  E-value=0.17  Score=41.44  Aligned_cols=54  Identities=20%  Similarity=0.191  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHH---HHHcCCCCCHH-HHHHHhhhccc
Q psy8734          85 MNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHI---LTHLGKVSNPV-VIISALLHDTV  143 (264)
Q Consensus        85 ~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~i---L~~l~g~~D~~-~liAALLHDvv  143 (264)
                      +.+++...|..+...+..+    +..-+.|..+|...   ++..-| .|.+ +.+||||||+-
T Consensus        11 ~~~~~i~~~v~~~~~~~~d----~sHd~~H~~RV~~~A~~Ia~~e~-~D~~vv~~AALLHDIg   68 (217)
T d2pq7a1          11 PHLREILNIVREAFKDYDD----PAHDISHTFRVMENASEIASREK-CDLQKAIIAALLHDIK   68 (217)
T ss_dssp             TTHHHHHHHHHHHHTTCCC----TTTSHHHHHHHHHHHHHHHHHHT-CCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHhhCCC----CCcCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHhhhhc
Confidence            4588899999888776532    23447888888765   333234 4765 67999999974

>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]}

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Uncharacterized protein BT9727 1981
species: Bacillus thuringiensis [TaxId: 1428]

Probab=91.56  E-value=0.46  Score=38.82  Aligned_cols=111  Identities=22%  Similarity=0.182  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCchhhhHHHHHHHHH---HcCCCCCHH-HHHHHhhhccccCCCCC-----HH---
Q psy8734          84 IMNIVKATDFASHKHHFQRRKDPEGTPYIEHPVAVAHILT---HLGKVSNPV-VIISALLHDTVEDTDTT-----FE---  151 (264)
Q Consensus        84 ~~~i~~Al~~A~~aH~gQ~rk~~sG~PYi~H~l~VA~iL~---~l~g~~D~~-~liAALLHDvvEDt~~t-----~e---  151 (264)
                      .+.|+++..|..+.+.+..     ...-+.|..+|.....   ..-| .|.+ ..+||||||+.......     ..   
T Consensus         3 ~e~i~~~~~~vk~~~~~~~-----~~Hd~~Hi~RV~~~A~~Ia~~e~-~D~~vv~~AAlLHDig~~k~~~~~~~~~~~a~   76 (213)
T d3djba1           3 QEKIEKTITFVKHILEKDA-----SGHDWYHIRRVHKMAISLSEQEG-GNRFIIEMAALLHDVADEKLNESEEAGMKKVS   76 (213)
T ss_dssp             HHHHHHHHHHHHHHTTSSS-----CTTTHHHHHHHHHHHHHHHTTTC-SCHHHHHHHHTTHHHHC--CCSSSTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCC-----CcCChHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccccccccchhhhHHHHH
Confidence            4568999999988876542     1234788888876533   3224 4665 66999999987643211     11   


Q ss_pred             HHHHH--hCHHHHHHHHHhhcCCCCCHHHHHHHHHHHcCCCCcchhHhHHHhHHhhhh
Q psy8734         152 EIERE--FGPRVRSVVEELTDNKHMTRDERKRCQILHAPHSSHEAKLVKLADKLHNLR  207 (264)
Q Consensus       152 eL~~~--FG~~Va~LV~gLTk~~~l~~~~r~~~q~e~lr~~D~rvvLIKLADRL~NLR  207 (264)
                      ++-..  |.++..+.|..+-.....+...  ..     ....+...+|.=||||+.|-
T Consensus        77 ~~L~~~g~~~~~i~~V~~~I~~hs~s~~~--~~-----~~~t~e~~Iv~DADrLDalG  127 (213)
T d3djba1          77 DWLEELHVEEEESKHVLHIIANMSYKGGH--GG-----KVESIEGKLVQDADRLDALG  127 (213)
T ss_dssp             HHHHHTCCCHHHHHHHHHHTTCCC------------------HHHHHHHHHHHTTTSS
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHhCcccCC--CC-----CCCCHHHHHHHHHHHHhhcc
Confidence            11121  4444444333332222111000  00     01245678899999999754